Query 008714
Match_columns 556
No_of_seqs 448 out of 3882
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b1b_A TRXR, thioredoxin reduc 100.0 9.6E-70 3.3E-74 580.2 37.9 423 97-539 38-494 (542)
2 3ic9_A Dihydrolipoamide dehydr 100.0 2.5E-64 8.7E-69 537.9 42.6 422 101-538 8-435 (492)
3 3urh_A Dihydrolipoyl dehydroge 100.0 8E-64 2.7E-68 534.9 45.9 424 99-539 23-454 (491)
4 3lad_A Dihydrolipoamide dehydr 100.0 1E-63 3.6E-68 532.3 45.7 420 100-538 2-433 (476)
5 4dna_A Probable glutathione re 100.0 3.2E-63 1.1E-67 526.4 44.8 415 101-540 5-424 (463)
6 3dk9_A Grase, GR, glutathione 100.0 2.9E-63 1E-67 529.0 44.2 426 99-540 18-452 (478)
7 2wpf_A Trypanothione reductase 100.0 4.4E-63 1.5E-67 528.5 44.6 418 98-539 4-448 (495)
8 1ojt_A Surface protein; redox- 100.0 1.3E-62 4.5E-67 524.1 44.7 421 99-539 4-440 (482)
9 3o0h_A Glutathione reductase; 100.0 1.6E-62 5.5E-67 523.7 44.0 415 100-539 25-443 (484)
10 1fec_A Trypanothione reductase 100.0 3.4E-62 1.2E-66 521.3 45.6 415 101-539 3-444 (490)
11 1zmd_A Dihydrolipoyl dehydroge 100.0 2E-62 7E-67 521.9 42.8 424 100-538 5-435 (474)
12 2qae_A Lipoamide, dihydrolipoy 100.0 3.1E-62 1E-66 519.7 43.9 418 101-538 2-430 (468)
13 1ges_A Glutathione reductase; 100.0 1.6E-62 5.6E-67 518.7 40.7 416 100-538 3-422 (450)
14 2eq6_A Pyruvate dehydrogenase 100.0 3.9E-62 1.3E-66 517.8 43.6 412 101-538 6-423 (464)
15 1ebd_A E3BD, dihydrolipoamide 100.0 1.2E-61 4E-66 513.4 46.1 418 101-539 3-424 (455)
16 2r9z_A Glutathione amide reduc 100.0 8.1E-62 2.8E-66 515.0 42.4 414 100-538 3-420 (463)
17 1xdi_A RV3303C-LPDA; reductase 100.0 2.1E-61 7E-66 517.1 44.8 415 101-538 2-433 (499)
18 1dxl_A Dihydrolipoamide dehydr 100.0 1.9E-61 6.4E-66 514.2 44.0 423 100-539 5-433 (470)
19 1v59_A Dihydrolipoamide dehydr 100.0 2.3E-61 7.9E-66 514.5 43.5 426 100-540 4-442 (478)
20 2a8x_A Dihydrolipoyl dehydroge 100.0 1.4E-61 4.7E-66 514.2 41.5 417 101-539 3-427 (464)
21 1onf_A GR, grase, glutathione 100.0 3.9E-61 1.4E-65 514.6 45.1 413 101-538 2-468 (500)
22 3qfa_A Thioredoxin reductase 1 100.0 4.5E-61 1.5E-65 515.9 45.5 428 97-539 28-476 (519)
23 2hqm_A GR, grase, glutathione 100.0 6.2E-61 2.1E-65 510.6 44.1 417 100-538 10-443 (479)
24 1lvl_A Dihydrolipoamide dehydr 100.0 5.1E-61 1.7E-65 508.4 42.2 412 101-538 5-420 (458)
25 3l8k_A Dihydrolipoyl dehydroge 100.0 3.7E-61 1.3E-65 510.8 41.1 407 100-539 3-427 (466)
26 3dgh_A TRXR-1, thioredoxin red 100.0 1.8E-60 6.1E-65 508.0 44.4 424 100-539 8-448 (483)
27 3dgz_A Thioredoxin reductase 2 100.0 2.2E-60 7.4E-65 507.8 42.9 424 100-539 5-448 (488)
28 2yqu_A 2-oxoglutarate dehydrog 100.0 3.4E-60 1.1E-64 502.2 42.1 413 102-538 2-417 (455)
29 1zk7_A HGII, reductase, mercur 100.0 7E-60 2.4E-64 501.5 43.7 413 100-537 3-423 (467)
30 1mo9_A ORF3; nucleotide bindin 100.0 1E-59 3.6E-64 506.1 36.6 411 99-539 41-485 (523)
31 2x8g_A Thioredoxin glutathione 100.0 2.2E-55 7.5E-60 480.7 43.5 421 100-539 106-555 (598)
32 4eqs_A Coenzyme A disulfide re 100.0 1.2E-52 4.1E-57 440.9 26.2 364 103-537 2-400 (437)
33 3oc4_A Oxidoreductase, pyridin 100.0 4E-51 1.4E-55 432.2 35.7 372 102-539 3-404 (452)
34 3kd9_A Coenzyme A disulfide re 100.0 8.5E-50 2.9E-54 421.8 35.7 373 101-538 3-405 (449)
35 2cdu_A NADPH oxidase; flavoenz 100.0 3.9E-49 1.3E-53 417.1 33.3 377 102-539 1-409 (452)
36 3iwa_A FAD-dependent pyridine 100.0 6.3E-49 2.2E-53 417.8 33.4 381 102-538 4-422 (472)
37 2bc0_A NADH oxidase; flavoprot 100.0 2E-48 6.9E-53 415.4 36.1 375 101-539 35-454 (490)
38 3ics_A Coenzyme A-disulfide re 100.0 2.7E-48 9.4E-53 423.9 32.6 374 100-537 35-444 (588)
39 3ntd_A FAD-dependent pyridine 100.0 3.8E-48 1.3E-52 421.3 33.5 376 102-537 2-428 (565)
40 1nhp_A NADH peroxidase; oxidor 100.0 6.1E-48 2.1E-52 407.3 34.0 373 102-538 1-407 (447)
41 3cgb_A Pyridine nucleotide-dis 100.0 1.2E-47 4E-52 408.5 34.3 375 101-539 36-445 (480)
42 2v3a_A Rubredoxin reductase; a 100.0 3.3E-45 1.1E-49 378.9 28.1 358 101-538 4-379 (384)
43 1xhc_A NADH oxidase /nitrite r 100.0 2.7E-45 9.2E-50 376.4 18.5 331 102-529 9-354 (367)
44 3klj_A NAD(FAD)-dependent dehy 100.0 2.6E-42 8.8E-47 356.0 20.3 334 101-531 9-360 (385)
45 4gcm_A TRXR, thioredoxin reduc 100.0 9E-41 3.1E-45 335.7 30.0 291 100-441 5-302 (312)
46 3lxd_A FAD-dependent pyridine 100.0 8.7E-40 3E-44 341.7 31.2 349 100-528 8-383 (415)
47 1q1r_A Putidaredoxin reductase 100.0 3.8E-40 1.3E-44 345.6 26.9 354 101-533 4-386 (431)
48 2gqw_A Ferredoxin reductase; f 100.0 1.3E-39 4.3E-44 339.3 30.6 341 100-528 6-372 (408)
49 4a5l_A Thioredoxin reductase; 100.0 1.9E-39 6.5E-44 326.1 27.0 296 99-441 2-308 (314)
50 3fg2_P Putative rubredoxin red 100.0 3.6E-39 1.2E-43 335.7 29.9 347 102-528 2-372 (404)
51 3ef6_A Toluene 1,2-dioxygenase 100.0 2.2E-39 7.5E-44 337.8 27.4 345 102-528 3-371 (410)
52 2q7v_A Thioredoxin reductase; 100.0 1.4E-36 4.7E-41 307.0 33.1 291 100-442 7-309 (325)
53 3r9u_A Thioredoxin reductase; 100.0 1.8E-36 6.1E-41 304.3 30.9 291 100-441 3-308 (315)
54 2q0l_A TRXR, thioredoxin reduc 100.0 2.3E-36 7.9E-41 303.3 30.4 292 102-441 2-305 (311)
55 3f8d_A Thioredoxin reductase ( 100.0 1.1E-36 3.6E-41 306.9 27.8 289 100-441 14-313 (323)
56 1trb_A Thioredoxin reductase; 100.0 4.5E-36 1.5E-40 302.3 29.9 298 101-441 5-310 (320)
57 1fl2_A Alkyl hydroperoxide red 100.0 5E-36 1.7E-40 300.7 30.0 288 101-441 1-301 (310)
58 3cty_A Thioredoxin reductase; 100.0 6.4E-36 2.2E-40 301.2 29.1 290 99-441 14-312 (319)
59 2zbw_A Thioredoxin reductase; 100.0 5.3E-36 1.8E-40 303.9 26.5 292 100-442 4-314 (335)
60 2a87_A TRXR, TR, thioredoxin r 100.0 7.5E-35 2.5E-39 295.6 31.7 291 99-441 12-312 (335)
61 4fk1_A Putative thioredoxin re 100.0 5.4E-36 1.8E-40 299.8 22.2 280 99-441 4-296 (304)
62 3fbs_A Oxidoreductase; structu 100.0 6.1E-36 2.1E-40 297.8 22.0 274 101-441 2-288 (297)
63 3ab1_A Ferredoxin--NADP reduct 100.0 2.3E-35 8E-40 302.4 26.8 293 100-442 13-325 (360)
64 3itj_A Thioredoxin reductase 1 100.0 5.2E-35 1.8E-39 296.6 28.5 293 98-441 19-331 (338)
65 3lzw_A Ferredoxin--NADP reduct 100.0 1.8E-35 6E-40 299.3 23.6 290 101-442 7-312 (332)
66 1hyu_A AHPF, alkyl hydroperoxi 100.0 3.4E-34 1.2E-38 307.1 31.3 289 100-441 211-512 (521)
67 1vdc_A NTR, NADPH dependent th 100.0 5.9E-34 2E-38 288.5 30.9 290 101-441 8-319 (333)
68 1m6i_A Programmed cell death p 100.0 3E-35 1E-39 313.4 21.9 319 99-454 9-361 (493)
69 4g6h_A Rotenone-insensitive NA 100.0 5.1E-36 1.8E-40 319.0 14.8 296 100-442 41-398 (502)
70 4a9w_A Monooxygenase; baeyer-v 100.0 3.5E-34 1.2E-38 292.5 21.9 300 101-442 3-349 (357)
71 1gte_A Dihydropyrimidine dehyd 100.0 5.1E-35 1.7E-39 335.9 16.9 312 100-468 186-534 (1025)
72 2vdc_G Glutamate synthase [NAD 100.0 1.3E-34 4.3E-39 304.4 16.2 283 100-442 121-441 (456)
73 3d1c_A Flavin-containing putat 100.0 2E-33 6.8E-38 288.8 24.5 311 101-443 4-337 (369)
74 2xve_A Flavin-containing monoo 100.0 9E-32 3.1E-36 284.4 27.7 296 102-444 3-340 (464)
75 3sx6_A Sulfide-quinone reducta 100.0 1.8E-32 6.3E-37 288.0 20.3 288 101-441 4-340 (437)
76 1lqt_A FPRA; NADP+ derivative, 100.0 1.2E-32 4E-37 289.8 17.8 284 101-442 3-384 (456)
77 1cjc_A Protein (adrenodoxin re 100.0 3.4E-32 1.2E-36 286.6 19.3 286 101-442 6-392 (460)
78 3h8l_A NADH oxidase; membrane 100.0 3.6E-32 1.2E-36 283.6 15.6 279 102-442 2-333 (409)
79 3vrd_B FCCB subunit, flavocyto 100.0 6.4E-32 2.2E-36 280.9 15.8 308 102-467 3-350 (401)
80 2gv8_A Monooxygenase; FMO, FAD 100.0 1.4E-30 4.8E-35 274.6 23.8 301 100-444 5-361 (447)
81 3hyw_A Sulfide-quinone reducta 100.0 9.4E-32 3.2E-36 281.8 13.7 284 102-441 3-329 (430)
82 3h28_A Sulfide-quinone reducta 100.0 8.1E-32 2.8E-36 282.6 12.2 283 102-441 3-329 (430)
83 1o94_A Tmadh, trimethylamine d 100.0 3.2E-31 1.1E-35 294.7 16.9 282 98-443 386-698 (729)
84 3k30_A Histamine dehydrogenase 100.0 6.1E-31 2.1E-35 291.3 17.9 273 97-443 387-673 (690)
85 2gag_A Heterotetrameric sarcos 100.0 1.4E-30 4.6E-35 297.2 20.9 285 100-442 127-441 (965)
86 3s5w_A L-ornithine 5-monooxyge 100.0 2.8E-29 9.6E-34 266.0 27.5 320 100-441 29-445 (463)
87 3gwf_A Cyclohexanone monooxyge 100.0 5.4E-29 1.9E-33 267.0 24.3 301 101-441 8-453 (540)
88 1ps9_A 2,4-dienoyl-COA reducta 100.0 4.3E-29 1.5E-33 275.8 21.0 260 98-440 370-671 (671)
89 3uox_A Otemo; baeyer-villiger 100.0 1.3E-27 4.4E-32 256.6 24.7 306 100-441 8-462 (545)
90 4ap3_A Steroid monooxygenase; 100.0 3.1E-27 1.1E-31 253.9 22.6 300 100-441 20-467 (549)
91 1w4x_A Phenylacetone monooxyge 99.9 6.9E-27 2.3E-31 251.9 22.9 308 100-441 15-462 (542)
92 1y56_A Hypothetical protein PH 99.9 4.7E-27 1.6E-31 250.1 15.8 251 100-443 107-375 (493)
93 4b63_A L-ornithine N5 monooxyg 99.9 4E-20 1.4E-24 196.8 28.4 223 220-444 186-486 (501)
94 2ywl_A Thioredoxin reductase r 99.9 2.7E-21 9.1E-26 177.4 14.0 151 271-442 3-168 (180)
95 2e5v_A L-aspartate oxidase; ar 99.8 1.3E-21 4.4E-26 206.8 1.4 305 103-440 1-364 (472)
96 2gqf_A Hypothetical protein HI 99.8 6.5E-19 2.2E-23 182.1 9.3 195 101-311 4-268 (401)
97 3fpz_A Thiazole biosynthetic e 99.7 2.1E-20 7.1E-25 188.4 -6.3 245 100-441 64-321 (326)
98 3ces_A MNMG, tRNA uridine 5-ca 99.6 4.2E-14 1.4E-18 151.7 20.6 167 101-299 28-220 (651)
99 3k7m_X 6-hydroxy-L-nicotine ox 99.5 3.6E-16 1.2E-20 163.6 -0.5 98 309-422 203-308 (431)
100 2cul_A Glucose-inhibited divis 99.5 2.6E-14 9E-19 136.3 10.7 158 270-442 4-229 (232)
101 2zxi_A TRNA uridine 5-carboxym 99.5 2.6E-12 9E-17 137.3 20.3 167 101-299 27-219 (637)
102 3cp8_A TRNA uridine 5-carboxym 99.2 2.6E-10 9.1E-15 122.3 15.1 169 100-299 20-214 (641)
103 1rp0_A ARA6, thiazole biosynth 99.1 1.9E-10 6.6E-15 112.9 11.2 165 270-442 40-272 (284)
104 3v76_A Flavoprotein; structura 99.1 3.3E-10 1.1E-14 117.2 12.5 138 99-243 25-187 (417)
105 2cul_A Glucose-inhibited divis 99.0 8.1E-10 2.8E-14 105.0 11.3 116 101-244 3-126 (232)
106 1kf6_A Fumarate reductase flav 99.0 1.8E-09 6.3E-14 116.9 15.2 36 101-136 5-43 (602)
107 3gyx_A Adenylylsulfate reducta 99.0 3.7E-10 1.3E-14 123.1 7.0 36 100-135 21-62 (662)
108 2ywl_A Thioredoxin reductase r 99.0 3.1E-09 1.1E-13 96.5 12.1 106 102-245 2-112 (180)
109 1rp0_A ARA6, thiazole biosynth 99.0 5.4E-09 1.8E-13 102.5 13.7 128 101-246 39-194 (284)
110 2i0z_A NAD(FAD)-utilizing dehy 98.9 4.3E-09 1.5E-13 110.2 11.9 137 100-243 25-191 (447)
111 3nlc_A Uncharacterized protein 98.9 4.4E-09 1.5E-13 111.9 10.4 142 99-243 105-277 (549)
112 3alj_A 2-methyl-3-hydroxypyrid 98.9 1E-08 3.5E-13 104.8 12.1 132 101-245 11-162 (379)
113 3oz2_A Digeranylgeranylglycero 98.9 3.5E-09 1.2E-13 108.5 8.5 38 101-138 4-42 (397)
114 3jsk_A Cypbp37 protein; octame 98.8 9.3E-09 3.2E-13 102.2 10.9 52 100-151 78-132 (344)
115 3dme_A Conserved exported prot 98.8 2.5E-08 8.4E-13 101.2 14.2 46 100-145 3-51 (369)
116 2bry_A NEDD9 interacting prote 98.8 1.3E-08 4.6E-13 107.8 12.6 129 100-246 91-233 (497)
117 2gmh_A Electron transfer flavo 98.8 1.8E-08 6.3E-13 108.8 12.8 146 98-244 32-218 (584)
118 3i3l_A Alkylhalidase CMLS; fla 98.8 2.9E-08 1E-12 107.1 12.8 134 100-244 22-189 (591)
119 3nix_A Flavoprotein/dehydrogen 98.8 2.5E-08 8.6E-13 103.4 11.3 130 101-244 5-167 (421)
120 1ryi_A Glycine oxidase; flavop 98.8 2E-08 6.7E-13 102.7 10.3 49 98-146 14-64 (382)
121 1y0p_A Fumarate reductase flav 98.7 6.6E-08 2.3E-12 104.4 13.9 41 100-140 125-166 (571)
122 3cgv_A Geranylgeranyl reductas 98.7 1.3E-08 4.4E-13 104.6 7.8 143 101-244 4-163 (397)
123 3e1t_A Halogenase; flavoprotei 98.7 4.6E-08 1.6E-12 104.2 12.2 136 100-246 6-175 (512)
124 1qo8_A Flavocytochrome C3 fuma 98.7 8.4E-08 2.9E-12 103.4 14.2 53 390-442 501-561 (566)
125 1y56_B Sarcosine oxidase; dehy 98.7 1.6E-07 5.3E-12 96.0 15.0 38 100-137 4-41 (382)
126 3ps9_A TRNA 5-methylaminomethy 98.7 4.6E-08 1.6E-12 107.8 11.5 37 100-136 271-308 (676)
127 3kkj_A Amine oxidase, flavin-c 98.7 1.1E-08 3.8E-13 98.6 5.7 40 101-140 2-42 (336)
128 2gag_B Heterotetrameric sarcos 98.7 7.1E-08 2.4E-12 99.3 12.0 38 100-137 20-59 (405)
129 3pvc_A TRNA 5-methylaminomethy 98.7 1.1E-07 3.8E-12 105.0 13.7 37 100-136 263-300 (689)
130 2bry_A NEDD9 interacting prote 98.7 2.3E-09 7.8E-14 113.7 0.0 146 231-378 37-233 (497)
131 3rp8_A Flavoprotein monooxygen 98.7 3.1E-08 1.1E-12 102.3 8.5 34 99-132 21-54 (407)
132 4at0_A 3-ketosteroid-delta4-5a 98.7 9.9E-08 3.4E-12 101.5 12.5 53 390-442 448-508 (510)
133 3pl8_A Pyranose 2-oxidase; sub 98.7 1.4E-09 4.8E-14 118.2 -2.1 64 324-388 273-337 (623)
134 2x3n_A Probable FAD-dependent 98.7 8.1E-08 2.8E-12 98.8 11.1 141 101-244 6-167 (399)
135 3ihg_A RDME; flavoenzyme, anth 98.7 1.2E-07 4.2E-12 101.5 12.8 34 100-133 4-37 (535)
136 1yvv_A Amine oxidase, flavin-c 98.7 8.1E-08 2.8E-12 96.2 10.7 40 101-140 2-42 (336)
137 3fmw_A Oxygenase; mithramycin, 98.7 1E-07 3.4E-12 102.6 12.0 133 100-244 48-208 (570)
138 3dje_A Fructosyl amine: oxygen 98.6 8.8E-08 3E-12 99.9 11.1 36 100-135 5-41 (438)
139 3nyc_A D-arginine dehydrogenas 98.6 1.2E-07 4.1E-12 96.6 11.0 36 100-136 8-44 (381)
140 2gf3_A MSOX, monomeric sarcosi 98.6 2.8E-07 9.5E-12 94.3 13.4 37 101-137 3-39 (389)
141 2aqj_A Tryptophan halogenase, 98.6 1.5E-07 5.1E-12 100.9 11.5 37 101-137 5-44 (538)
142 3ka7_A Oxidoreductase; structu 98.6 5.2E-07 1.8E-11 93.5 15.2 40 102-141 1-41 (425)
143 3atr_A Conserved archaeal prot 98.6 6.3E-08 2.2E-12 101.5 8.3 34 100-133 5-38 (453)
144 2xdo_A TETX2 protein; tetracyc 98.6 1.2E-07 4.2E-12 97.5 10.2 36 100-135 25-61 (398)
145 1k0i_A P-hydroxybenzoate hydro 98.6 3E-07 1E-11 94.3 13.1 146 101-246 2-166 (394)
146 2qa1_A PGAE, polyketide oxygen 98.6 1.4E-07 4.7E-12 100.1 10.7 144 98-244 8-166 (500)
147 3nrn_A Uncharacterized protein 98.6 4.3E-07 1.5E-11 94.1 13.3 39 103-141 2-41 (421)
148 1d4d_A Flavocytochrome C fumar 98.6 3.7E-07 1.3E-11 98.4 13.0 53 390-442 506-567 (572)
149 2qa2_A CABE, polyketide oxygen 98.5 1.9E-07 6.4E-12 99.0 10.3 142 99-244 10-167 (499)
150 3qj4_A Renalase; FAD/NAD(P)-bi 98.5 8.6E-08 2.9E-12 96.4 7.3 39 102-140 2-44 (342)
151 2oln_A NIKD protein; flavoprot 98.5 4.1E-07 1.4E-11 93.4 12.1 35 101-135 4-38 (397)
152 2uzz_A N-methyl-L-tryptophan o 98.5 8.4E-07 2.9E-11 90.1 14.2 35 101-135 2-36 (372)
153 3c96_A Flavin-containing monoo 98.5 4.9E-07 1.7E-11 93.3 12.4 35 101-135 4-40 (410)
154 2gjc_A Thiazole biosynthetic e 98.5 7.1E-07 2.4E-11 88.2 12.4 41 100-140 64-107 (326)
155 3c4n_A Uncharacterized protein 98.5 4.3E-07 1.5E-11 93.7 11.2 36 101-136 36-73 (405)
156 2vou_A 2,6-dihydroxypyridine h 98.5 4E-07 1.4E-11 93.6 10.2 32 101-132 5-36 (397)
157 2pyx_A Tryptophan halogenase; 98.5 4.6E-07 1.6E-11 96.8 10.9 54 192-245 175-235 (526)
158 1chu_A Protein (L-aspartate ox 98.5 4.5E-07 1.5E-11 96.9 10.5 37 100-137 7-44 (540)
159 2weu_A Tryptophan 5-halogenase 98.4 6E-07 2E-11 95.6 10.7 35 101-135 2-39 (511)
160 2e4g_A Tryptophan halogenase; 98.4 7.5E-07 2.5E-11 95.6 11.5 34 101-134 25-61 (550)
161 1pj5_A N,N-dimethylglycine oxi 98.4 1.1E-06 3.8E-11 99.1 13.2 46 100-145 3-53 (830)
162 3lzw_A Ferredoxin--NADP reduct 98.4 2.1E-06 7.3E-11 85.4 13.2 100 270-378 8-129 (332)
163 4a9w_A Monooxygenase; baeyer-v 98.4 1.4E-06 4.7E-11 87.7 11.5 94 270-373 4-130 (357)
164 4gut_A Lysine-specific histone 98.4 6.1E-07 2.1E-11 99.5 9.3 39 100-138 335-374 (776)
165 3axb_A Putative oxidoreductase 98.4 1.5E-06 5.1E-11 90.8 11.7 46 100-145 22-71 (448)
166 3f8d_A Thioredoxin reductase ( 98.4 2E-06 6.7E-11 85.2 11.6 99 270-378 16-128 (323)
167 2zbw_A Thioredoxin reductase; 98.4 3.4E-06 1.2E-10 84.2 13.4 96 270-374 6-120 (335)
168 2wdq_A Succinate dehydrogenase 98.3 6.9E-06 2.4E-10 88.6 16.6 62 310-373 143-204 (588)
169 3da1_A Glycerol-3-phosphate de 98.3 1.8E-06 6E-11 92.8 11.9 41 100-140 17-58 (561)
170 3g5s_A Methylenetetrahydrofola 98.3 1.6E-06 5.5E-11 86.7 10.3 47 102-148 2-55 (443)
171 3fbs_A Oxidoreductase; structu 98.3 4.9E-06 1.7E-10 81.3 13.5 100 270-378 3-115 (297)
172 3ab1_A Ferredoxin--NADP reduct 98.3 5E-06 1.7E-10 84.0 13.9 98 270-375 15-131 (360)
173 2qcu_A Aerobic glycerol-3-phos 98.3 5.5E-06 1.9E-10 87.8 14.7 36 101-136 3-38 (501)
174 3itj_A Thioredoxin reductase 1 98.3 2.4E-06 8.1E-11 85.3 11.1 103 269-378 22-145 (338)
175 1xhc_A NADH oxidase /nitrite r 98.3 2.8E-06 9.5E-11 86.3 11.5 91 102-245 144-236 (367)
176 4ap3_A Steroid monooxygenase; 98.3 4.2E-06 1.4E-10 89.5 13.4 102 270-378 22-164 (549)
177 2dkh_A 3-hydroxybenzoate hydro 98.3 3.7E-06 1.3E-10 91.8 13.2 33 100-132 31-64 (639)
178 4gde_A UDP-galactopyranose mut 98.3 4E-07 1.4E-11 96.8 5.1 41 100-140 9-51 (513)
179 3nlc_A Uncharacterized protein 98.3 2.7E-06 9.4E-11 90.4 11.0 100 269-376 107-278 (549)
180 2h88_A Succinate dehydrogenase 98.3 2.4E-06 8.4E-11 92.4 10.7 38 100-137 17-55 (621)
181 2q0l_A TRXR, thioredoxin reduc 98.3 6.5E-06 2.2E-10 81.2 12.8 98 271-378 3-117 (311)
182 2r0c_A REBC; flavin adenine di 98.3 2.9E-06 1E-10 91.0 11.0 37 100-136 25-62 (549)
183 3gwf_A Cyclohexanone monooxyge 98.3 5.1E-06 1.8E-10 88.7 12.7 102 270-378 9-152 (540)
184 2gqw_A Ferredoxin reductase; f 98.2 5.6E-06 1.9E-10 85.3 12.2 95 101-245 145-241 (408)
185 2yqu_A 2-oxoglutarate dehydrog 98.2 3.1E-06 1.1E-10 88.6 10.3 94 102-246 168-267 (455)
186 2bs2_A Quinol-fumarate reducta 98.2 6.4E-06 2.2E-10 89.8 12.9 34 101-134 5-38 (660)
187 1fl2_A Alkyl hydroperoxide red 98.2 5.8E-06 2E-10 81.5 11.6 101 271-378 3-118 (310)
188 2xve_A Flavin-containing monoo 98.2 5.4E-06 1.8E-10 86.9 11.6 107 270-378 3-171 (464)
189 4eqs_A Coenzyme A disulfide re 98.2 2.9E-06 1E-10 88.2 9.3 93 102-245 148-242 (437)
190 2eq6_A Pyruvate dehydrogenase 98.2 5.7E-06 2E-10 86.8 11.3 94 102-246 170-274 (464)
191 1lvl_A Dihydrolipoamide dehydr 98.2 5.2E-06 1.8E-10 87.0 10.9 95 102-247 172-272 (458)
192 2gv8_A Monooxygenase; FMO, FAD 98.2 9.1E-06 3.1E-10 84.8 12.6 106 269-378 6-182 (447)
193 3r9u_A Thioredoxin reductase; 98.2 8.7E-06 3E-10 80.2 11.8 99 270-378 5-121 (315)
194 1ebd_A E3BD, dihydrolipoamide 98.2 8.8E-06 3E-10 85.1 12.4 94 102-246 171-273 (455)
195 2q7v_A Thioredoxin reductase; 98.2 9.3E-06 3.2E-10 80.7 12.0 101 270-378 9-126 (325)
196 4dgk_A Phytoene dehydrogenase; 98.2 8.2E-07 2.8E-11 94.2 4.2 58 310-375 221-278 (501)
197 3alj_A 2-methyl-3-hydroxypyrid 98.2 9.3E-06 3.2E-10 82.7 11.9 97 269-377 11-162 (379)
198 1ges_A Glutathione reductase; 98.2 7.6E-06 2.6E-10 85.5 11.5 94 102-246 168-268 (450)
199 3sx6_A Sulfide-quinone reducta 98.2 2.1E-06 7.2E-11 89.4 7.2 97 270-378 5-115 (437)
200 2bcg_G Secretory pathway GDP d 98.2 1.6E-06 5.4E-11 90.8 6.2 43 99-141 9-52 (453)
201 2v3a_A Rubredoxin reductase; a 98.2 6.2E-06 2.1E-10 84.2 10.4 95 101-245 145-245 (384)
202 1nhp_A NADH peroxidase; oxidor 98.2 6.2E-06 2.1E-10 86.1 10.6 95 101-246 149-249 (447)
203 3uox_A Otemo; baeyer-villiger 98.1 4.6E-06 1.6E-10 89.1 9.5 102 270-378 10-152 (545)
204 3d1c_A Flavin-containing putat 98.1 1.5E-05 5.2E-10 80.6 13.0 97 270-376 5-144 (369)
205 3v76_A Flavoprotein; structura 98.1 4.1E-06 1.4E-10 86.4 8.7 98 269-376 27-188 (417)
206 1v0j_A UDP-galactopyranose mut 98.1 1.7E-06 6E-11 88.8 5.9 43 99-141 5-49 (399)
207 1jnr_A Adenylylsulfate reducta 98.1 1.4E-05 4.9E-10 87.1 13.4 36 100-135 21-60 (643)
208 3ef6_A Toluene 1,2-dioxygenase 98.1 7.7E-06 2.6E-10 84.3 10.5 95 101-245 143-243 (410)
209 2r9z_A Glutathione amide reduc 98.1 7.6E-06 2.6E-10 85.8 10.6 94 102-246 167-267 (463)
210 1v59_A Dihydrolipoamide dehydr 98.1 1.1E-05 3.7E-10 85.0 11.5 94 102-246 184-290 (478)
211 3h8l_A NADH oxidase; membrane 98.1 1.5E-06 5.2E-11 89.6 4.8 101 270-378 2-116 (409)
212 3fg2_P Putative rubredoxin red 98.1 1.1E-05 3.8E-10 82.9 11.1 94 102-245 143-243 (404)
213 3klj_A NAD(FAD)-dependent dehy 98.1 2.7E-06 9.3E-11 86.9 6.4 97 270-378 10-119 (385)
214 3lxd_A FAD-dependent pyridine 98.1 1.6E-05 5.6E-10 82.0 12.1 95 101-245 152-253 (415)
215 3hdq_A UDP-galactopyranose mut 98.1 2.7E-06 9.2E-11 86.8 6.0 42 99-140 27-69 (397)
216 1s3e_A Amine oxidase [flavin-c 98.1 2.2E-06 7.6E-11 91.3 5.4 42 100-141 3-45 (520)
217 2b9w_A Putative aminooxidase; 98.1 2.9E-06 9.9E-11 87.8 6.1 42 100-141 5-48 (424)
218 4fk1_A Putative thioredoxin re 98.1 2.1E-05 7.2E-10 77.4 12.1 100 271-378 8-120 (304)
219 2vou_A 2,6-dihydroxypyridine h 98.1 2E-05 6.8E-10 80.8 12.1 100 269-376 5-154 (397)
220 3h28_A Sulfide-quinone reducta 98.1 3E-06 1E-10 88.1 5.6 99 269-379 2-113 (430)
221 1trb_A Thioredoxin reductase; 98.0 2.5E-05 8.5E-10 77.3 11.9 98 270-378 6-119 (320)
222 2x3n_A Probable FAD-dependent 98.0 2E-05 6.8E-10 80.8 11.6 100 270-377 7-168 (399)
223 1hyu_A AHPF, alkyl hydroperoxi 98.0 2.3E-05 8E-10 83.3 12.4 103 269-378 212-329 (521)
224 3cty_A Thioredoxin reductase; 98.0 2.9E-05 9.9E-10 76.9 12.3 98 270-378 17-129 (319)
225 2rgh_A Alpha-glycerophosphate 98.0 0.0001 3.5E-09 79.2 17.5 35 101-135 32-66 (571)
226 2hqm_A GR, grase, glutathione 98.0 1.9E-05 6.5E-10 83.2 11.4 93 102-245 186-287 (479)
227 1onf_A GR, grase, glutathione 98.0 2.3E-05 8E-10 82.9 12.1 94 102-246 177-278 (500)
228 1rsg_A FMS1 protein; FAD bindi 98.0 2.6E-06 8.9E-11 90.7 4.6 40 101-140 8-49 (516)
229 2e1m_A L-glutamate oxidase; L- 98.0 4.4E-06 1.5E-10 84.5 5.9 42 100-141 43-86 (376)
230 1zmd_A Dihydrolipoyl dehydroge 98.0 2.7E-05 9.3E-10 81.8 12.1 95 102-246 179-285 (474)
231 1vdc_A NTR, NADPH dependent th 98.0 1.2E-05 4.3E-10 80.0 9.1 98 270-378 9-127 (333)
232 1fec_A Trypanothione reductase 98.0 2.5E-05 8.4E-10 82.5 11.7 94 102-246 188-291 (490)
233 3hyw_A Sulfide-quinone reducta 98.0 2E-06 6.8E-11 89.4 3.2 96 269-376 2-110 (430)
234 4b1b_A TRXR, thioredoxin reduc 98.0 1.7E-05 5.9E-10 84.3 10.5 94 102-246 224-322 (542)
235 3s5w_A L-ornithine 5-monooxyge 98.0 1.2E-05 4.2E-10 84.1 9.3 105 271-378 32-195 (463)
236 1ojt_A Surface protein; redox- 98.0 1.1E-05 3.8E-10 85.0 8.8 93 102-245 186-288 (482)
237 2wpf_A Trypanothione reductase 98.0 2.5E-05 8.7E-10 82.5 11.5 94 102-246 192-295 (495)
238 2gqf_A Hypothetical protein HI 98.0 2.4E-05 8.2E-10 80.3 11.0 98 271-376 6-169 (401)
239 2a8x_A Dihydrolipoyl dehydroge 98.0 3E-05 1E-09 81.3 11.8 94 102-246 172-274 (464)
240 2yg5_A Putrescine oxidase; oxi 98.0 3.5E-06 1.2E-10 88.0 4.7 41 101-141 5-46 (453)
241 2a87_A TRXR, TR, thioredoxin r 98.0 2.5E-05 8.6E-10 78.0 10.8 99 269-378 14-129 (335)
242 1i8t_A UDP-galactopyranose mut 98.0 4.4E-06 1.5E-10 84.8 5.2 40 102-141 2-42 (367)
243 1mo9_A ORF3; nucleotide bindin 98.0 3.2E-05 1.1E-09 82.4 12.0 94 102-246 215-319 (523)
244 2jae_A L-amino acid oxidase; o 98.0 5.7E-06 1.9E-10 87.4 6.1 41 100-140 10-51 (489)
245 1yvv_A Amine oxidase, flavin-c 98.0 4.1E-05 1.4E-09 76.2 12.2 98 270-375 3-162 (336)
246 2ivd_A PPO, PPOX, protoporphyr 98.0 4.2E-06 1.4E-10 88.0 4.9 43 99-141 14-57 (478)
247 3kd9_A Coenzyme A disulfide re 98.0 1.1E-05 3.6E-10 84.3 7.9 100 269-378 3-117 (449)
248 1q1r_A Putidaredoxin reductase 98.0 1.5E-05 5.3E-10 82.6 9.0 99 269-378 4-117 (431)
249 2bc0_A NADH oxidase; flavoprot 98.0 2.9E-05 9.8E-10 82.0 11.1 94 102-246 195-294 (490)
250 3i6d_A Protoporphyrinogen oxid 98.0 3.6E-06 1.2E-10 88.2 4.0 41 101-141 5-52 (470)
251 3ics_A Coenzyme A-disulfide re 98.0 2.5E-05 8.7E-10 84.4 10.8 93 102-245 188-284 (588)
252 3nks_A Protoporphyrinogen oxid 98.0 4.7E-06 1.6E-10 87.6 4.9 40 101-140 2-44 (477)
253 3cgb_A Pyridine nucleotide-dis 97.9 2.3E-05 7.9E-10 82.5 9.9 93 101-245 186-284 (480)
254 3oc4_A Oxidoreductase, pyridin 97.9 1.8E-05 6.2E-10 82.7 8.9 101 270-378 3-118 (452)
255 1pn0_A Phenol 2-monooxygenase; 97.9 4.4E-05 1.5E-09 83.6 12.2 32 101-132 8-44 (665)
256 3nix_A Flavoprotein/dehydrogen 97.9 3.8E-05 1.3E-09 79.2 11.0 101 270-375 6-166 (421)
257 2qae_A Lipoamide, dihydrolipoy 97.9 4.8E-05 1.6E-09 79.8 11.9 94 102-246 175-279 (468)
258 3ntd_A FAD-dependent pyridine 97.9 3.5E-05 1.2E-09 82.9 10.9 93 102-245 152-269 (565)
259 1w4x_A Phenylacetone monooxyge 97.9 6.7E-05 2.3E-09 80.2 13.0 101 270-377 17-158 (542)
260 2vvm_A Monoamine oxidase N; FA 97.9 9.4E-06 3.2E-10 85.8 6.2 40 101-140 39-79 (495)
261 1dxl_A Dihydrolipoamide dehydr 97.9 3E-05 1E-09 81.3 10.0 94 102-246 178-282 (470)
262 1c0p_A D-amino acid oxidase; a 97.9 9.6E-06 3.3E-10 82.0 6.0 39 99-137 4-42 (363)
263 1xdi_A RV3303C-LPDA; reductase 97.9 4.4E-05 1.5E-09 80.8 11.3 94 102-246 183-282 (499)
264 3urh_A Dihydrolipoyl dehydroge 97.9 4.7E-05 1.6E-09 80.4 11.5 94 102-246 199-303 (491)
265 1sez_A Protoporphyrinogen oxid 97.9 7.5E-06 2.6E-10 86.8 5.2 41 100-140 12-53 (504)
266 3p1w_A Rabgdi protein; GDI RAB 97.9 8.7E-06 3E-10 84.8 5.5 58 310-374 256-313 (475)
267 3vrd_B FCCB subunit, flavocyto 97.9 6.7E-06 2.3E-10 84.4 4.7 97 269-378 2-111 (401)
268 3iwa_A FAD-dependent pyridine 97.9 2.9E-05 9.8E-10 81.6 9.4 103 269-378 3-128 (472)
269 3ihm_A Styrene monooxygenase A 97.9 1.1E-05 3.7E-10 83.7 5.8 51 100-150 21-75 (430)
270 1d5t_A Guanine nucleotide diss 97.9 1.2E-05 4.1E-10 83.5 6.1 43 99-141 4-47 (433)
271 3lad_A Dihydrolipoamide dehydr 97.9 6.1E-05 2.1E-09 79.1 11.5 94 102-246 181-283 (476)
272 4hb9_A Similarities with proba 97.9 0.0001 3.4E-09 75.5 12.7 99 270-375 2-166 (412)
273 2i0z_A NAD(FAD)-utilizing dehy 97.8 6.9E-05 2.4E-09 78.1 11.6 98 270-375 27-191 (447)
274 2cdu_A NADPH oxidase; flavoenz 97.8 5.9E-05 2E-09 78.7 11.0 95 102-246 150-250 (452)
275 3o0h_A Glutathione reductase; 97.8 4.6E-05 1.6E-09 80.3 10.3 95 101-246 191-291 (484)
276 2bi7_A UDP-galactopyranose mut 97.8 1.2E-05 4E-10 82.1 5.5 41 101-141 3-44 (384)
277 3lov_A Protoporphyrinogen oxid 97.8 1.1E-05 3.9E-10 84.6 5.5 41 101-141 4-47 (475)
278 4dsg_A UDP-galactopyranose mut 97.8 1.3E-05 4.6E-10 84.3 5.9 42 100-141 8-51 (484)
279 3ic9_A Dihydrolipoamide dehydr 97.8 8.6E-05 2.9E-09 78.4 11.9 93 102-246 175-277 (492)
280 1k0i_A P-hydroxybenzoate hydro 97.8 7.2E-05 2.5E-09 76.4 10.9 102 271-378 4-166 (394)
281 2iid_A L-amino-acid oxidase; f 97.8 1.5E-05 5E-10 84.4 5.9 41 100-140 32-73 (498)
282 4a5l_A Thioredoxin reductase; 97.8 0.00011 3.8E-09 72.3 11.7 98 271-378 6-124 (314)
283 1m6i_A Programmed cell death p 97.8 6.7E-05 2.3E-09 79.2 10.2 95 102-246 181-285 (493)
284 2gjc_A Thiazole biosynthetic e 97.8 6.2E-05 2.1E-09 74.2 9.3 171 271-441 67-321 (326)
285 1zk7_A HGII, reductase, mercur 97.8 9.3E-05 3.2E-09 77.5 11.2 92 102-246 177-274 (467)
286 2vdc_G Glutamate synthase [NAD 97.8 2.4E-05 8.1E-10 81.7 6.3 89 268-374 121-218 (456)
287 3ces_A MNMG, tRNA uridine 5-ca 97.8 0.00015 5.3E-09 77.8 12.7 100 270-377 29-183 (651)
288 4gcm_A TRXR, thioredoxin reduc 97.8 0.00011 3.7E-09 72.5 10.7 97 271-378 8-119 (312)
289 3dk9_A Grase, GR, glutathione 97.8 0.00014 4.9E-09 76.3 12.2 94 102-246 188-296 (478)
290 4dna_A Probable glutathione re 97.7 0.00011 3.9E-09 76.8 11.3 94 101-246 170-271 (463)
291 1y0p_A Fumarate reductase flav 97.7 0.00013 4.4E-09 78.6 11.8 103 270-375 127-317 (571)
292 2xdo_A TETX2 protein; tetracyc 97.7 0.00016 5.6E-09 73.9 12.0 102 269-378 26-185 (398)
293 4g6h_A Rotenone-insensitive NA 97.7 0.00013 4.5E-09 77.0 11.4 91 103-244 219-333 (502)
294 2zxi_A TRNA uridine 5-carboxym 97.7 0.00022 7.6E-09 76.3 13.2 100 270-377 28-182 (637)
295 3qj4_A Renalase; FAD/NAD(P)-bi 97.7 0.00013 4.5E-09 72.9 11.0 95 270-373 2-163 (342)
296 3dme_A Conserved exported prot 97.7 0.00023 7.9E-09 71.5 12.9 33 270-302 5-37 (369)
297 3l8k_A Dihydrolipoyl dehydroge 97.7 0.00016 5.4E-09 75.8 11.8 96 271-378 6-147 (466)
298 3dgh_A TRXR-1, thioredoxin red 97.7 0.00014 4.8E-09 76.5 11.4 94 102-246 188-292 (483)
299 2gag_B Heterotetrameric sarcos 97.7 0.00016 5.4E-09 74.0 11.2 33 270-302 22-56 (405)
300 3cp8_A TRNA uridine 5-carboxym 97.7 0.00025 8.4E-09 76.2 12.7 100 269-376 21-175 (641)
301 3dgz_A Thioredoxin reductase 2 97.7 0.00023 7.8E-09 75.0 12.3 94 102-246 186-290 (488)
302 1b37_A Protein (polyamine oxid 97.7 3E-05 1E-09 81.4 5.2 41 101-141 4-46 (472)
303 3atr_A Conserved archaeal prot 97.7 0.0002 6.8E-09 74.7 11.5 102 270-377 7-164 (453)
304 1cjc_A Protein (adrenodoxin re 97.7 3.7E-05 1.3E-09 80.3 5.7 90 268-375 5-106 (460)
305 3i3l_A Alkylhalidase CMLS; fla 97.6 0.00031 1.1E-08 75.6 12.8 101 269-375 23-188 (591)
306 3qfa_A Thioredoxin reductase 1 97.6 0.00032 1.1E-08 74.5 12.6 94 102-246 211-318 (519)
307 1y56_B Sarcosine oxidase; dehy 97.6 0.00027 9.3E-09 71.7 11.6 33 270-302 6-38 (382)
308 1qo8_A Flavocytochrome C3 fuma 97.6 0.00018 6.2E-09 77.3 10.7 104 270-376 122-313 (566)
309 2z3y_A Lysine-specific histone 97.6 5.2E-05 1.8E-09 83.1 6.1 42 99-140 105-147 (662)
310 2gmh_A Electron transfer flavo 97.6 0.00036 1.2E-08 75.2 12.6 106 270-376 36-218 (584)
311 3rp8_A Flavoprotein monooxygen 97.6 0.00029 9.8E-09 72.3 11.3 98 269-377 23-183 (407)
312 2gf3_A MSOX, monomeric sarcosi 97.6 0.00046 1.6E-08 70.1 12.3 33 270-302 4-36 (389)
313 4hb9_A Similarities with proba 97.6 4.5E-05 1.5E-09 78.1 4.7 31 102-132 2-32 (412)
314 1d4d_A Flavocytochrome C fumar 97.6 0.00041 1.4E-08 74.6 12.4 104 270-376 127-318 (572)
315 3ihg_A RDME; flavoenzyme, anth 97.6 0.00029 1E-08 75.1 11.1 102 270-375 6-183 (535)
316 2uzz_A N-methyl-L-tryptophan o 97.5 0.00037 1.3E-08 70.3 11.4 32 271-302 4-35 (372)
317 1ryi_A Glycine oxidase; flavop 97.5 0.00024 8.1E-09 72.1 9.9 33 270-302 18-50 (382)
318 2x8g_A Thioredoxin glutathione 97.5 0.00047 1.6E-08 74.5 12.4 32 102-133 287-318 (598)
319 2xag_A Lysine-specific histone 97.5 8.2E-05 2.8E-09 83.1 6.4 42 99-140 276-318 (852)
320 3c4a_A Probable tryptophan hyd 97.5 6.5E-05 2.2E-09 76.5 5.1 33 103-135 2-37 (381)
321 2qa2_A CABE, polyketide oxygen 97.5 0.00069 2.4E-08 71.5 13.0 100 270-375 13-166 (499)
322 3oz2_A Digeranylgeranylglycero 97.5 0.00058 2E-08 69.2 11.5 99 271-374 6-161 (397)
323 3g3e_A D-amino-acid oxidase; F 97.5 8.1E-05 2.8E-09 74.7 4.9 33 103-135 2-40 (351)
324 3e1t_A Halogenase; flavoprotei 97.5 0.00079 2.7E-08 71.3 12.7 103 270-376 8-173 (512)
325 2qa1_A PGAE, polyketide oxygen 97.4 0.00069 2.4E-08 71.5 12.0 100 270-375 12-165 (500)
326 3cgv_A Geranylgeranyl reductas 97.4 0.00067 2.3E-08 69.0 11.4 100 271-375 6-162 (397)
327 1lqt_A FPRA; NADP+ derivative, 97.4 9.1E-05 3.1E-09 77.3 4.8 88 269-374 3-107 (456)
328 3ps9_A TRNA 5-methylaminomethy 97.4 0.0009 3.1E-08 73.5 12.9 33 270-302 273-305 (676)
329 1y56_A Hypothetical protein PH 97.4 0.00019 6.6E-09 75.7 7.1 100 270-378 109-222 (493)
330 2aqj_A Tryptophan halogenase, 97.4 0.0015 5.1E-08 69.6 14.0 54 316-377 171-224 (538)
331 3c96_A Flavin-containing monoo 97.4 0.00063 2.2E-08 69.8 10.7 104 270-377 5-171 (410)
332 3k30_A Histamine dehydrogenase 97.3 0.00065 2.2E-08 74.7 10.9 94 102-245 524-626 (690)
333 3pvc_A TRNA 5-methylaminomethy 97.3 0.0016 5.5E-08 71.6 13.7 34 269-302 264-297 (689)
334 4at0_A 3-ketosteroid-delta4-5a 97.3 0.0013 4.3E-08 69.7 12.2 60 312-375 204-264 (510)
335 1gte_A Dihydropyrimidine dehyd 97.3 0.00014 4.9E-09 83.5 5.2 93 269-377 187-290 (1025)
336 3fmw_A Oxygenase; mithramycin, 97.3 0.00045 1.5E-08 74.1 8.7 98 270-375 50-207 (570)
337 1ps9_A 2,4-dienoyl-COA reducta 97.3 0.00036 1.2E-08 76.6 7.9 86 269-378 373-470 (671)
338 2oln_A NIKD protein; flavoprot 97.3 0.0017 5.9E-08 66.1 12.4 32 271-302 6-37 (397)
339 3jsk_A Cypbp37 protein; octame 97.3 0.0022 7.4E-08 63.6 12.3 165 270-441 80-331 (344)
340 1kdg_A CDH, cellobiose dehydro 97.2 0.00024 8.3E-09 75.9 4.8 34 100-133 6-39 (546)
341 2gag_A Heterotetrameric sarcos 97.2 0.0011 3.9E-08 75.5 10.5 107 270-378 129-256 (965)
342 2e4g_A Tryptophan halogenase; 97.2 0.0033 1.1E-07 67.1 13.5 46 325-377 209-254 (550)
343 3nyc_A D-arginine dehydrogenas 97.2 0.00095 3.2E-08 67.4 8.8 33 269-302 9-41 (381)
344 3t37_A Probable dehydrogenase; 97.1 0.00025 8.6E-09 75.4 4.0 33 101-133 17-50 (526)
345 1pj5_A N,N-dimethylglycine oxi 97.1 0.0025 8.5E-08 71.7 11.8 33 270-302 5-38 (830)
346 1ju2_A HydroxynitrIle lyase; f 97.0 0.00022 7.7E-09 75.9 3.0 33 100-133 25-57 (536)
347 3q9t_A Choline dehydrogenase a 97.0 0.00036 1.2E-08 74.8 4.4 34 100-133 5-39 (577)
348 3c4n_A Uncharacterized protein 97.0 0.00066 2.3E-08 69.6 6.2 33 270-302 37-71 (405)
349 3dje_A Fructosyl amine: oxygen 97.0 0.0041 1.4E-07 64.2 12.3 33 270-302 7-40 (438)
350 3ayj_A Pro-enzyme of L-phenyla 97.0 0.00044 1.5E-08 75.3 4.4 35 101-135 56-100 (721)
351 3da1_A Glycerol-3-phosphate de 97.0 0.0032 1.1E-07 67.3 11.1 32 270-301 19-50 (561)
352 2weu_A Tryptophan 5-halogenase 96.9 0.0052 1.8E-07 64.9 12.1 52 318-377 181-232 (511)
353 2r0c_A REBC; flavin adenine di 96.9 0.0032 1.1E-07 67.2 10.4 98 270-374 27-195 (549)
354 4b63_A L-ornithine N5 monooxyg 96.8 0.009 3.1E-07 62.9 13.3 107 271-379 41-218 (501)
355 2qcu_A Aerobic glycerol-3-phos 96.8 0.005 1.7E-07 64.9 11.2 32 271-302 5-36 (501)
356 3qvp_A Glucose oxidase; oxidor 96.8 0.00063 2.2E-08 72.8 4.0 34 100-133 18-52 (583)
357 2dkh_A 3-hydroxybenzoate hydro 96.8 0.005 1.7E-07 67.0 11.2 104 270-374 33-210 (639)
358 2pyx_A Tryptophan halogenase; 96.8 0.0085 2.9E-07 63.5 12.7 47 324-377 189-235 (526)
359 2e5v_A L-aspartate oxidase; ar 96.8 0.0053 1.8E-07 64.2 10.6 31 271-301 1-31 (472)
360 1o94_A Tmadh, trimethylamine d 96.7 0.0029 1E-07 69.9 9.0 31 102-132 529-561 (729)
361 3c4a_A Probable tryptophan hyd 96.7 0.0015 5E-08 66.3 5.8 35 270-304 1-37 (381)
362 1coy_A Cholesterol oxidase; ox 96.7 0.0013 4.4E-08 69.6 5.3 34 100-133 10-43 (507)
363 1n4w_A CHOD, cholesterol oxida 96.7 0.0012 4E-08 69.8 4.9 33 101-133 5-37 (504)
364 1vg0_A RAB proteins geranylger 96.7 0.0018 6.3E-08 69.5 6.4 42 99-140 6-48 (650)
365 3fim_B ARYL-alcohol oxidase; A 96.6 0.00082 2.8E-08 71.8 2.9 33 101-133 2-35 (566)
366 2rgh_A Alpha-glycerophosphate 96.4 0.0095 3.2E-07 63.8 9.8 33 270-302 33-65 (571)
367 1gpe_A Protein (glucose oxidas 96.3 0.0022 7.4E-08 69.0 4.3 34 100-133 23-57 (587)
368 3axb_A Putative oxidoreductase 96.3 0.0082 2.8E-07 62.1 8.6 31 270-300 24-55 (448)
369 2jbv_A Choline oxidase; alcoho 96.3 0.0023 7.9E-08 68.2 4.1 34 100-133 12-46 (546)
370 1kf6_A Fumarate reductase flav 96.2 0.022 7.5E-07 61.3 11.4 32 271-302 7-40 (602)
371 1pn0_A Phenol 2-monooxygenase; 96.1 0.027 9.1E-07 61.5 11.8 32 271-302 10-46 (665)
372 3kkj_A Amine oxidase, flavin-c 96.0 0.0048 1.7E-07 58.3 4.6 34 271-304 4-37 (336)
373 3lk7_A UDP-N-acetylmuramoylala 96.0 0.009 3.1E-07 62.0 6.9 128 102-297 10-143 (451)
374 1chu_A Protein (L-aspartate ox 95.8 0.063 2.1E-06 57.0 12.4 33 270-303 9-41 (540)
375 3eag_A UDP-N-acetylmuramate:L- 95.3 0.042 1.4E-06 54.2 8.4 127 102-298 5-140 (326)
376 2x5o_A UDP-N-acetylmuramoylala 95.2 0.015 5.2E-07 60.0 5.1 126 102-298 6-136 (439)
377 2h88_A Succinate dehydrogenase 95.0 0.16 5.4E-06 54.7 12.4 32 271-302 20-51 (621)
378 4dgk_A Phytoene dehydrogenase; 95.0 0.015 5E-07 61.1 4.2 35 270-304 2-36 (501)
379 3fwz_A Inner membrane protein 94.8 0.036 1.2E-06 47.2 5.6 33 101-133 7-39 (140)
380 3ihm_A Styrene monooxygenase A 94.7 0.025 8.5E-07 58.2 5.0 37 266-302 19-55 (430)
381 2g1u_A Hypothetical protein TM 94.2 0.056 1.9E-06 46.8 5.4 39 264-302 14-52 (155)
382 2iid_A L-amino-acid oxidase; f 94.0 0.049 1.7E-06 57.0 5.4 39 268-306 32-70 (498)
383 2g1u_A Hypothetical protein TM 94.0 0.061 2.1E-06 46.6 5.1 32 102-133 20-51 (155)
384 3llv_A Exopolyphosphatase-rela 93.8 0.062 2.1E-06 45.5 4.9 32 102-133 7-38 (141)
385 3eag_A UDP-N-acetylmuramate:L- 93.8 0.09 3.1E-06 51.8 6.7 77 269-379 4-82 (326)
386 3nrn_A Uncharacterized protein 93.8 0.053 1.8E-06 55.4 5.2 34 270-303 1-34 (421)
387 1lss_A TRK system potassium up 93.7 0.065 2.2E-06 45.1 4.8 32 102-133 5-36 (140)
388 1id1_A Putative potassium chan 93.5 0.081 2.8E-06 45.6 5.1 32 102-133 4-35 (153)
389 3ka7_A Oxidoreductase; structu 93.4 0.067 2.3E-06 54.6 5.2 34 270-303 1-34 (425)
390 3ic5_A Putative saccharopine d 93.4 0.079 2.7E-06 43.0 4.6 32 102-133 6-38 (118)
391 3lk7_A UDP-N-acetylmuramoylala 93.2 0.12 4E-06 53.5 6.6 79 268-378 8-87 (451)
392 3k7m_X 6-hydroxy-L-nicotine ox 92.9 0.082 2.8E-06 54.1 5.0 34 271-304 3-36 (431)
393 3nks_A Protoporphyrinogen oxid 92.9 0.085 2.9E-06 54.8 5.2 35 270-304 3-39 (477)
394 2e1m_A L-glutamate oxidase; L- 92.9 0.096 3.3E-06 52.6 5.3 37 268-304 43-80 (376)
395 2jae_A L-amino acid oxidase; o 92.8 0.12 4E-06 54.0 6.0 36 269-304 11-46 (489)
396 2b9w_A Putative aminooxidase; 92.6 0.1 3.4E-06 53.3 5.0 36 269-304 6-42 (424)
397 3g5s_A Methylenetetrahydrofola 92.5 0.11 3.9E-06 52.0 5.0 33 270-302 2-34 (443)
398 4gde_A UDP-galactopyranose mut 92.5 0.09 3.1E-06 55.1 4.6 35 270-304 11-46 (513)
399 3dfz_A SIRC, precorrin-2 dehyd 92.4 0.13 4.5E-06 47.4 5.0 34 267-300 29-62 (223)
400 1c0p_A D-amino acid oxidase; a 92.4 0.12 4.1E-06 51.5 5.1 32 270-301 7-38 (363)
401 2hmt_A YUAA protein; RCK, KTN, 92.2 0.13 4.5E-06 43.3 4.5 32 102-133 7-38 (144)
402 2bi7_A UDP-galactopyranose mut 92.1 0.14 4.8E-06 51.6 5.4 35 270-304 4-38 (384)
403 1rsg_A FMS1 protein; FAD bindi 92.1 0.12 4E-06 54.5 4.9 35 270-304 9-44 (516)
404 2ivd_A PPO, PPOX, protoporphyr 92.0 0.12 4.1E-06 53.7 4.8 36 269-304 16-51 (478)
405 3dfz_A SIRC, precorrin-2 dehyd 91.9 0.15 5.2E-06 47.0 4.8 31 102-132 32-62 (223)
406 3i6d_A Protoporphyrinogen oxid 91.8 0.073 2.5E-06 55.0 2.9 35 270-304 6-46 (470)
407 1s3e_A Amine oxidase [flavin-c 91.7 0.13 4.4E-06 54.2 4.7 35 270-304 5-39 (520)
408 3fwz_A Inner membrane protein 91.7 0.17 5.8E-06 42.8 4.6 35 267-301 5-39 (140)
409 3c85_A Putative glutathione-re 91.6 0.2 6.9E-06 44.5 5.2 32 102-133 40-72 (183)
410 2bcg_G Secretory pathway GDP d 91.5 0.14 4.6E-06 53.0 4.5 37 270-306 12-48 (453)
411 4dio_A NAD(P) transhydrogenase 91.4 0.16 5.5E-06 51.1 4.7 31 102-132 191-221 (405)
412 1id1_A Putative potassium chan 91.3 0.24 8.3E-06 42.5 5.3 33 269-301 3-35 (153)
413 1kyq_A Met8P, siroheme biosynt 91.2 0.13 4.4E-06 49.1 3.6 31 102-132 14-44 (274)
414 4hv4_A UDP-N-acetylmuramate--L 91.2 0.22 7.6E-06 52.0 5.8 123 102-296 23-152 (494)
415 1sez_A Protoporphyrinogen oxid 91.2 0.19 6.4E-06 52.6 5.3 36 269-304 13-48 (504)
416 2yg5_A Putrescine oxidase; oxi 91.2 0.17 5.9E-06 52.0 4.9 35 270-304 6-40 (453)
417 3hdq_A UDP-galactopyranose mut 91.2 0.18 6.2E-06 51.0 4.9 35 270-304 30-64 (397)
418 3g3e_A D-amino-acid oxidase; F 91.0 0.14 4.9E-06 50.7 4.0 33 270-302 1-39 (351)
419 3p2y_A Alanine dehydrogenase/p 90.7 0.2 6.7E-06 50.1 4.6 31 102-132 185-215 (381)
420 3llv_A Exopolyphosphatase-rela 90.7 0.2 6.7E-06 42.3 4.0 32 270-301 7-38 (141)
421 2a9f_A Putative malic enzyme ( 90.7 0.22 7.4E-06 49.7 4.8 33 101-133 188-221 (398)
422 1lss_A TRK system potassium up 90.6 0.3 1E-05 40.8 5.1 32 270-301 5-36 (140)
423 1i8t_A UDP-galactopyranose mut 90.6 0.21 7.1E-06 50.0 4.7 34 271-304 3-36 (367)
424 3fpz_A Thiazole biosynthetic e 90.6 0.2 6.9E-06 49.1 4.5 35 270-304 66-102 (326)
425 3ic5_A Putative saccharopine d 90.5 0.27 9.1E-06 39.7 4.6 33 269-301 5-38 (118)
426 2vvm_A Monoamine oxidase N; FA 90.3 0.22 7.6E-06 51.9 4.9 35 270-304 40-74 (495)
427 1v0j_A UDP-galactopyranose mut 90.3 0.18 6.1E-06 51.2 4.0 35 270-304 8-43 (399)
428 3lov_A Protoporphyrinogen oxid 90.2 0.21 7.2E-06 51.7 4.6 35 270-304 5-41 (475)
429 2z3y_A Lysine-specific histone 89.9 0.32 1.1E-05 52.9 5.8 37 268-304 106-142 (662)
430 3l4b_C TRKA K+ channel protien 89.8 0.23 8E-06 45.5 4.0 31 103-133 2-32 (218)
431 2xag_A Lysine-specific histone 89.5 0.33 1.1E-05 54.1 5.6 37 268-304 277-313 (852)
432 1kyq_A Met8P, siroheme biosynt 89.5 0.32 1.1E-05 46.3 4.7 35 267-301 11-45 (274)
433 1vl6_A Malate oxidoreductase; 89.5 0.31 1.1E-05 48.5 4.8 33 101-133 192-225 (388)
434 2raf_A Putative dinucleotide-b 89.4 0.36 1.2E-05 44.0 4.9 40 264-303 14-53 (209)
435 3p1w_A Rabgdi protein; GDI RAB 89.2 0.58 2E-05 48.4 6.9 45 97-141 16-61 (475)
436 1x13_A NAD(P) transhydrogenase 89.2 0.31 1.1E-05 49.3 4.7 31 102-132 173-203 (401)
437 1jw9_B Molybdopterin biosynthe 89.0 0.37 1.3E-05 45.3 4.8 33 102-134 32-65 (249)
438 4dsg_A UDP-galactopyranose mut 88.7 0.37 1.3E-05 50.2 5.1 36 269-304 9-45 (484)
439 4e12_A Diketoreductase; oxidor 88.7 0.46 1.6E-05 45.6 5.3 32 102-133 5-36 (283)
440 1jnr_A Adenylylsulfate reducta 88.6 0.28 9.7E-06 53.1 4.2 51 391-441 401-464 (643)
441 1l7d_A Nicotinamide nucleotide 88.6 0.37 1.3E-05 48.6 4.7 31 102-132 173-203 (384)
442 2hmt_A YUAA protein; RCK, KTN, 88.5 0.37 1.3E-05 40.4 4.0 33 269-301 6-38 (144)
443 4ffl_A PYLC; amino acid, biosy 88.4 0.43 1.5E-05 47.5 5.1 31 102-132 2-32 (363)
444 1pjc_A Protein (L-alanine dehy 88.2 0.4 1.4E-05 47.8 4.7 31 102-132 168-198 (361)
445 3hn7_A UDP-N-acetylmuramate-L- 88.1 0.38 1.3E-05 50.6 4.7 88 257-378 7-95 (524)
446 1f0y_A HCDH, L-3-hydroxyacyl-C 88.0 0.53 1.8E-05 45.5 5.3 32 102-133 16-47 (302)
447 4hv4_A UDP-N-acetylmuramate--L 87.9 0.35 1.2E-05 50.5 4.2 75 268-378 21-96 (494)
448 3hwr_A 2-dehydropantoate 2-red 87.8 0.49 1.7E-05 46.2 5.0 40 261-301 11-50 (318)
449 3ado_A Lambda-crystallin; L-gu 87.7 0.22 7.5E-06 48.6 2.3 34 269-302 6-39 (319)
450 3c85_A Putative glutathione-re 87.3 0.43 1.5E-05 42.3 3.9 33 269-301 39-72 (183)
451 3i83_A 2-dehydropantoate 2-red 87.1 0.55 1.9E-05 45.9 4.9 32 102-133 3-34 (320)
452 1pzg_A LDH, lactate dehydrogen 87.1 0.76 2.6E-05 45.2 5.8 32 102-133 10-42 (331)
453 3vtf_A UDP-glucose 6-dehydroge 86.4 0.79 2.7E-05 46.8 5.7 33 100-132 20-52 (444)
454 1lld_A L-lactate dehydrogenase 86.4 0.64 2.2E-05 45.3 4.9 32 102-133 8-41 (319)
455 2ewd_A Lactate dehydrogenase,; 86.2 0.76 2.6E-05 44.8 5.4 32 102-133 5-37 (317)
456 3oj0_A Glutr, glutamyl-tRNA re 86.2 0.27 9.3E-06 41.7 1.8 32 102-133 22-53 (144)
457 3ado_A Lambda-crystallin; L-gu 86.2 0.64 2.2E-05 45.3 4.7 31 102-132 7-37 (319)
458 4gut_A Lysine-specific histone 86.0 0.56 1.9E-05 51.8 4.7 36 269-304 336-371 (776)
459 2eez_A Alanine dehydrogenase; 86.0 0.63 2.2E-05 46.5 4.7 31 102-132 167-197 (369)
460 2ew2_A 2-dehydropantoate 2-red 86.0 0.67 2.3E-05 44.9 4.8 32 102-133 4-35 (316)
461 3hn2_A 2-dehydropantoate 2-red 85.9 0.59 2E-05 45.5 4.4 32 102-133 3-34 (312)
462 1d5t_A Guanine nucleotide diss 85.8 0.59 2E-05 47.8 4.5 36 270-305 7-42 (433)
463 2vhw_A Alanine dehydrogenase; 85.6 0.68 2.3E-05 46.4 4.7 32 101-132 168-199 (377)
464 1bg6_A N-(1-D-carboxylethyl)-L 85.6 0.72 2.5E-05 45.6 4.9 32 102-133 5-36 (359)
465 4g65_A TRK system potassium up 85.3 0.38 1.3E-05 49.8 2.7 45 267-320 233-277 (461)
466 3ghy_A Ketopantoate reductase 85.2 0.83 2.8E-05 44.9 5.1 31 102-132 4-34 (335)
467 4e12_A Diketoreductase; oxidor 85.1 0.8 2.7E-05 43.8 4.8 33 270-302 5-37 (283)
468 3oj0_A Glutr, glutamyl-tRNA re 85.1 0.46 1.6E-05 40.3 2.7 33 269-301 21-53 (144)
469 1pjq_A CYSG, siroheme synthase 85.0 0.72 2.4E-05 47.6 4.7 31 102-132 13-43 (457)
470 3l9w_A Glutathione-regulated p 85.0 0.78 2.7E-05 46.6 4.9 32 102-133 5-36 (413)
471 1b37_A Protein (polyamine oxid 85.0 0.74 2.5E-05 47.6 4.8 36 269-304 4-40 (472)
472 1ks9_A KPA reductase;, 2-dehyd 85.0 0.86 2.9E-05 43.5 5.0 31 103-133 2-32 (291)
473 1nyt_A Shikimate 5-dehydrogena 84.8 0.92 3.2E-05 43.1 5.0 32 102-133 120-151 (271)
474 3qha_A Putative oxidoreductase 84.7 0.68 2.3E-05 44.6 4.1 32 101-132 15-46 (296)
475 3doj_A AT3G25530, dehydrogenas 84.4 1 3.5E-05 43.7 5.3 33 101-133 21-53 (310)
476 1t2d_A LDH-P, L-lactate dehydr 84.4 1.1 3.7E-05 43.9 5.4 31 102-132 5-36 (322)
477 3pl8_A Pyranose 2-oxidase; sub 84.4 0.84 2.9E-05 49.1 5.0 35 270-304 47-81 (623)
478 2raf_A Putative dinucleotide-b 84.4 0.97 3.3E-05 41.1 4.8 32 102-133 20-51 (209)
479 3phh_A Shikimate dehydrogenase 84.4 0.99 3.4E-05 42.8 4.9 33 101-133 118-150 (269)
480 2wdq_A Succinate dehydrogenase 84.3 0.86 2.9E-05 48.7 5.0 32 271-302 9-40 (588)
481 3i83_A 2-dehydropantoate 2-red 84.3 0.92 3.1E-05 44.3 4.9 32 270-301 3-34 (320)
482 3l4b_C TRKA K+ channel protien 84.2 0.74 2.5E-05 42.1 3.9 31 271-301 2-32 (218)
483 2y0c_A BCEC, UDP-glucose dehyd 84.1 0.9 3.1E-05 47.1 4.9 32 102-133 9-40 (478)
484 3g17_A Similar to 2-dehydropan 83.9 0.75 2.6E-05 44.3 4.0 32 102-133 3-34 (294)
485 2dpo_A L-gulonate 3-dehydrogen 83.8 0.94 3.2E-05 44.2 4.7 32 102-133 7-38 (319)
486 3gg2_A Sugar dehydrogenase, UD 83.7 0.96 3.3E-05 46.5 4.9 32 102-133 3-34 (450)
487 4dio_A NAD(P) transhydrogenase 83.2 1.2 4.1E-05 44.8 5.2 35 268-302 189-223 (405)
488 3ayj_A Pro-enzyme of L-phenyla 83.2 0.5 1.7E-05 51.4 2.6 36 269-304 56-100 (721)
489 3k6j_A Protein F01G10.3, confi 83.1 1.9 6.6E-05 44.2 6.8 32 102-133 55-86 (460)
490 3p2y_A Alanine dehydrogenase/p 83.1 0.93 3.2E-05 45.2 4.3 35 268-302 183-217 (381)
491 1zud_1 Adenylyltransferase THI 82.9 1.2 4.1E-05 41.8 4.9 33 102-134 29-62 (251)
492 1f0y_A HCDH, L-3-hydroxyacyl-C 82.6 1.1 3.9E-05 43.1 4.8 33 270-302 16-48 (302)
493 2hjr_A Malate dehydrogenase; m 82.6 1.3 4.6E-05 43.3 5.3 32 102-133 15-47 (328)
494 2rir_A Dipicolinate synthase, 82.6 1.2 4.3E-05 42.9 5.0 32 101-132 157-188 (300)
495 3d4o_A Dipicolinate synthase s 82.4 1.3 4.4E-05 42.6 5.0 32 101-132 155-186 (293)
496 2egg_A AROE, shikimate 5-dehyd 82.4 1.2 4E-05 43.0 4.7 32 102-133 142-174 (297)
497 1ks9_A KPA reductase;, 2-dehyd 82.3 1.3 4.5E-05 42.1 5.1 32 271-302 2-33 (291)
498 4ffl_A PYLC; amino acid, biosy 82.3 1.4 4.7E-05 43.7 5.4 33 270-302 2-34 (363)
499 3hn2_A 2-dehydropantoate 2-red 82.2 0.97 3.3E-05 43.9 4.1 32 270-301 3-34 (312)
500 4a7p_A UDP-glucose dehydrogena 82.2 1.3 4.4E-05 45.4 5.2 31 102-132 9-39 (446)
No 1
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=100.00 E-value=9.6e-70 Score=580.22 Aligned_cols=423 Identities=24% Similarity=0.354 Sum_probs=356.4
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC---------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhh
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG---------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK 167 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk---------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~ 167 (556)
..+.+|||+||||||||+.||.+++++|.+|+|||+ ..+||+|+|+||+|||.|++.+...+..+. ...
T Consensus 38 ~~~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~--~~~ 115 (542)
T 4b1b_A 38 EHTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKL--DSK 115 (542)
T ss_dssp -CCSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHH--TGG
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHh--hhH
Confidence 345679999999999999999999999999999995 348999999999999999988877665531 345
Q ss_pred hcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc------cceEEEeCeEEEeCCC
Q 008714 168 ALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG------TDNIVTAKDIIIATGS 241 (556)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~------~~~~~~~d~lViAtG~ 241 (556)
.+|+......+|++.+..+.+..++++...+...+++.+|+++.|.+.+.+.++|.+. +.+++++|++|||||+
T Consensus 116 ~~Gi~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs 195 (542)
T 4b1b_A 116 AYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC 195 (542)
T ss_dssp GGTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred hcCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC
Confidence 6888877788999999999999999998888888999999999999999999988762 3467999999999999
Q ss_pred CCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHh
Q 008714 242 VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLI 321 (556)
Q Consensus 242 ~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 321 (556)
+|.+|+..+..+..++++++++.++.+|++++|||||++|+|+|..|+++|.+||++.+ +++||.+|+++++.+++.|+
T Consensus 196 ~P~~P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~ 274 (542)
T 4b1b_A 196 RPHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYME 274 (542)
T ss_dssp EECCCSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHH
Confidence 99999877776677899999999999999999999999999999999999999999986 57899999999999999998
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CC-CceeeCCC
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QR-GFVPVDER 399 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~-G~i~vd~~ 399 (556)
+ .||+++++..+.+++..+ ..+.+.+.++ .++++|.|++|+|++||++.|+++..++.. .+ +.|.+|++
T Consensus 275 ~-~gi~~~~~~~v~~~~~~~--~~~~v~~~~~------~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~ 345 (542)
T 4b1b_A 275 E-QGVMFKNGILPKKLTKMD--DKILVEFSDK------TSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHL 345 (542)
T ss_dssp H-TTCEEEETCCEEEEEEET--TEEEEEETTS------CEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTT
T ss_pred h-hcceeecceEEEEEEecC--CeEEEEEcCC------CeEEEEEEEEcccccCCccccCcccceeeecccCceEecccc
Confidence 8 899999999999998753 3466777665 578899999999999999999999998876 44 44588899
Q ss_pred CccccCCCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhh
Q 008714 400 MRVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAE 477 (556)
Q Consensus 400 l~~~~~~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~ 477 (556)
+| |++|||||+|||++. |++++.|..||+++++|+++.. ...+|..+|+++|++||+++|||||+||++++.
T Consensus 346 ~~------Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~ 419 (542)
T 4b1b_A 346 SC------TNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYG 419 (542)
T ss_dssp SB------CSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHC
T ss_pred cc------ccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCC
Confidence 99 899999999999966 7899999999999999999865 457899999999999999999999999998754
Q ss_pred hcCceEEEEEEeccccch---------------hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 478 KEGFEVSVAKTSFKANTK---------------ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~---------------a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+.+ +.+..+.|..... ..+.+.++||+|||+.+..+++|||+|++|+.|.++|+.++..-
T Consensus 420 ~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi 494 (542)
T 4b1b_A 420 KSN--VEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALAL 494 (542)
T ss_dssp TTT--EEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHH
T ss_pred CCc--EEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 333 3333332322111 12345678999999654368999999999999999998886543
No 2
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=100.00 E-value=2.5e-64 Score=537.93 Aligned_cols=422 Identities=24% Similarity=0.353 Sum_probs=370.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+||||||||++||..|+++|++|+|||++.+||+|++.||+|+|.+++.+...+.. .++..+|++.....+++
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~---~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHA---SQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHH---TCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCcccccChhcCHHHHHHHHHHHHH---hhhhhcCcCCCCCccCH
Confidence 489999999999999999999999999999998899999999999999999988776655 34567787766566888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 181 QGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
..+..+.....+++...+...+... +++++.+.+.+.+.++|.+.++.++.||+||||||++|..|+.++..+..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~ 164 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTN 164 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcH
Confidence 8888888777777666655555554 678999999999999999977889999999999999999987665556778999
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++++.+...|++++|||+|++|+|+|..|++.|.+||++++.+++++.+++++.+.+.+.+++ . |++++++.+++++.
T Consensus 165 ~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~-V~i~~~~~v~~i~~ 242 (492)
T 3ic9_A 165 DNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNE-E-FYFDAKARVISTIE 242 (492)
T ss_dssp HHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHT-T-SEEETTCEEEEEEE
T ss_pred HHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhh-C-cEEEECCEEEEEEE
Confidence 999999899999999999999999999999999999999999999999999999999999987 6 99999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeC-CCCccccCCCCcCCCEEEec
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIG 417 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd-~~l~~~~~~~t~~~~Vya~G 417 (556)
++++ +.+++.+. +++..++++|.|++|+|++||++.++++..++.. ++|+|.|| +++| |+.|+|||+|
T Consensus 243 ~~~~--v~v~~~~~--~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~------t~~~~IyA~G 312 (492)
T 3ic9_A 243 KEDA--VEVIYFDK--SGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQ------TSVDHIFVAG 312 (492)
T ss_dssp CSSS--EEEEEECT--TCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCB------CSSTTEEECG
T ss_pred cCCE--EEEEEEeC--CCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccccc------CCCCCEEEEE
Confidence 5333 55666521 1123579999999999999999998888888887 78999999 8999 7899999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHhCC--CccCCCCCccEEEecccceeEecCCHHHHHHhhhhc-CceEEEEEEeccccc
Q 008714 418 DANGKMMLAHAASAQGISVVEQVTGR--DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKE-GFEVSVAKTSFKANT 494 (556)
Q Consensus 418 D~~~~~~~~~~A~~qg~~aa~~i~g~--~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~-~~~~~~~~~~~~~~~ 494 (556)
||++.+++++.|..||++||+||++. ....++..+|+++|++|++++||+||+||++++++. |++|.+.+.+|..+.
T Consensus 313 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~ 392 (492)
T 3ic9_A 313 DANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQG 392 (492)
T ss_dssp GGGTSSCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCH
T ss_pred ecCCCCccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccch
Confidence 99999999999999999999999973 345678889999999999999999999999864333 378999999999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
|+.++++++||+||++|+ .+++|||+|++|+.+.++|+.++..
T Consensus 393 ~a~~~~~~~g~~kli~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 435 (492)
T 3ic9_A 393 RSRVMGKNKGLLNVYADR-TSGEFLGAEMFGPAAEHIGHLLAWA 435 (492)
T ss_dssp HHHHTTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred hhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999999998 6899999999999999999887544
No 3
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=8e-64 Score=534.92 Aligned_cols=424 Identities=34% Similarity=0.539 Sum_probs=373.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
++++||+|||||+||++||..|+++|++|+|||+ +.+||+|.+.+|+|++.++..+..++.... .+..+|+....+.
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~--~~~~~g~~~~~~~ 100 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQH--GLEALGVEVANPK 100 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--SSGGGTEECCCCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHh--hHhhcCcccCCCc
Confidence 3459999999999999999999999999999998 899999999999999999988777655432 2467788777778
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCCCCCC--C
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIE--V 251 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p~~~~--~ 251 (556)
+++..+..+.+.....+...+...++..+++++.+.+.+.+.+.+.+. ++ .++.||+||||||+.|..+++.. +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~ 180 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAF 180 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCccccc
Confidence 899999999888888888888888899999999999998887776653 33 57999999999999976555544 5
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
++..++++++...+...|++++|||+|++|+|+|..|.+.|.+||++++.+++++.+++++.+.+.+.+++ .||+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~gV~v~~~ 259 (491)
T 3urh_A 181 DEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTK-QGIDFKLG 259 (491)
T ss_dssp CSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHH-TTCEEECS
T ss_pred CCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHh-CCCEEEEC
Confidence 67778999999999899999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 410 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~ 410 (556)
+.+++++.+++ .+.+.+.+.. .++..++++|.||+|+|++||++.++++..++.. ++|+|.||+++| |+.
T Consensus 260 ~~v~~i~~~~~--~~~v~~~~~~-~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~ 330 (491)
T 3urh_A 260 AKVTGAVKSGD--GAKVTFEPVK-GGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQ------TSI 330 (491)
T ss_dssp EEEEEEEEETT--EEEEEEEETT-SCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCB------CSS
T ss_pred CeEEEEEEeCC--EEEEEEEecC-CCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCC------CCC
Confidence 99999987533 3556666421 0123589999999999999999988777788876 689999999999 799
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEec
Q 008714 411 PHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSF 490 (556)
Q Consensus 411 ~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~ 490 (556)
|||||+|||++.|++++.|..||+++|+||+|+...+++..+|+++|++|++++||+||+||+++ |+++.+.+++|
T Consensus 331 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~ 406 (491)
T 3urh_A 331 AGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAA----GVAYKIGKFPF 406 (491)
T ss_dssp TTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEEEECCHHHHHHT----TCCEEEEEEEG
T ss_pred CCEEEEEecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEEEeCCHHHHHhC----CCCEEEEEEec
Confidence 99999999999999999999999999999999887788999999999999999999999999875 89999999999
Q ss_pred cccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 491 KANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 491 ~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
..+.|+.++++++||+||++|+ .+++|||+|++|+.+.++|+.++...
T Consensus 407 ~~~~~~~~~~~~~g~~k~i~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 454 (491)
T 3urh_A 407 TANGRARAMLQTDGFVKILADK-ETDRVLGGHIIGFGAGEMIHEIAVLM 454 (491)
T ss_dssp GGCHHHHHTTCCCCEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred CcchhhhcCCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999998 68999999999999999998776543
No 4
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=100.00 E-value=1e-63 Score=532.31 Aligned_cols=420 Identities=33% Similarity=0.553 Sum_probs=373.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc-------CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-------VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~-------~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
.+|||+|||||++|+++|..|++.|++|+|||+.. +||+|.+.||+|++.++.....++... ..+..+|+.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~--~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAH--ESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHH--TTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHH--HHHHhcCcc
Confidence 35899999999999999999999999999999965 999999999999999988877665543 224667777
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCC
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKG 248 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~ 248 (556)
.....+++..+..+.+.+.+.+...+...+++.+++++.+.+.+.+.+.+.+ .++ .++.||+||+|||+.|..|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~ 159 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 6667789999999888888888888888888899999999998887766555 344 579999999999999988877
Q ss_pred CCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEE
Q 008714 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 249 ~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~ 328 (556)
.+.++..+++++++..+...+++++|||+|++|+|+|..|.+.|.+||++++.+++++.+++++.+.+.+.+++ .||++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~Gv~v 238 (476)
T 3lad_A 160 APVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTK-QGLKI 238 (476)
T ss_dssp SCCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH-TTEEE
T ss_pred CCCCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHh-CCCEE
Confidence 77777789999999888889999999999999999999999999999999999999999999999999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 407 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~ 407 (556)
++++.+++++.+++ .+.+.+.+++ + .+++++|.|++|+|++||++.+.++..++.. ++|+|.||+++|
T Consensus 239 ~~~~~v~~i~~~~~--~~~v~~~~~~--g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~------ 307 (476)
T 3lad_A 239 LLGARVTGTEVKNK--QVTVKFVDAE--G-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCA------ 307 (476)
T ss_dssp EETCEEEEEEECSS--CEEEEEESSS--E-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSB------
T ss_pred EECCEEEEEEEcCC--EEEEEEEeCC--C-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcc------
Confidence 99999999987533 3567776642 1 2579999999999999999987778888877 689999999999
Q ss_pred CcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEE
Q 008714 408 NLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAK 487 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~ 487 (556)
|+.|||||+|||++.+++++.|..||++||+||+|++..+++..+|+++|++|++++||+||+||+++ |+++.+.+
T Consensus 308 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~----g~~~~~~~ 383 (476)
T 3lad_A 308 TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAE----GVAINVGV 383 (476)
T ss_dssp CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEEEECCHHHHHHT----TCCEEEEE
T ss_pred cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEEeeCCHHHHHhc----CCCEEEEE
Confidence 79999999999999999999999999999999999887788999999999999999999999999875 99999999
Q ss_pred EeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 488 TSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 488 ~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
++|..+.|+.++++++||+|+++|+ .+++|||+|++|+.+.++|+.++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 433 (476)
T 3lad_A 384 FPFAASGRAMAANDTAGFVKVIADA-KTDRVLGVHVIGPSAAELVQQGAIA 433 (476)
T ss_dssp EEGGGCHHHHHHTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred EeccccchheecCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6899999999999999999877554
No 5
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.2e-63 Score=526.39 Aligned_cols=415 Identities=28% Similarity=0.429 Sum_probs=372.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+|||||++|+++|..|+++|++|+|||++.+||+|.+.||+|++.++......+.+ .++..+|++...+.+++
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~---~~~~~~g~~~~~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHF---EDAAGFGWTVGESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHH---HHGGGGTEEECCCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHH---HHHHhcCcccCCCCcCH
Confidence 589999999999999999999999999999999999999999999999998887766655 34567787766677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE-ccceEEEeCeEEEeCCCCCC-CCCCCCCCCCeEec
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF-GTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVIT 258 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~-~~~~~~~~d~lViAtG~~p~-~p~~~~~~~~~v~t 258 (556)
..+..+.......+..++...+++.+++++.+.+.+.+.+.+.+ .++.++.||+||+|||+.|. .|+.++.+ .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--~~~~ 159 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE--LCIT 159 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG--GCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc--cccc
Confidence 99999888888888888888888899999999999999999988 46688999999999999998 88766543 3677
Q ss_pred ccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 259 SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 259 ~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
+++.+.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+++++
T Consensus 160 ~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~ 238 (463)
T 4dna_A 160 SNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEE-KGIRILCEDIIQSVS 238 (463)
T ss_dssp HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-TTCEEECSCCEEEEE
T ss_pred HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHH-CCCEEECCCEEEEEE
Confidence 8888888888999999999999999999999999999999999999999999999999999987 899999999999998
Q ss_pred ecCCCCeEEEE-EecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 339 PAKDGKPVTIE-LIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 339 ~~~~g~~~~v~-~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
.++++ .+.++ +.+| + +++|.|++|+|++||+..++++..++.. ++|+|.||+++| |+.|||||+
T Consensus 239 ~~~~~-~~~v~~~~~g------~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~iya~ 304 (463)
T 4dna_A 239 ADADG-RRVATTMKHG------E-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSR------TSTPGIYAL 304 (463)
T ss_dssp ECTTS-CEEEEESSSC------E-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCB------CSSTTEEEC
T ss_pred EcCCC-EEEEEEcCCC------e-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCC------CCCCCEEEE
Confidence 76443 35666 6555 4 9999999999999999988778888877 789999999999 799999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
|||++.+++++.|..||+++|+||++... ..++..+|+++|++|++++||+||+||+++ |+++.+.+.+|..+.+
T Consensus 305 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~----~~~~~~~~~~~~~~~~ 380 (463)
T 4dna_A 305 GDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARK----FQEIEVYRAEFRPMKA 380 (463)
T ss_dssp SGGGSSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHH----SSEEEEEEEEECCTTH
T ss_pred EecCCCCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHc----CCCeEEEEEeccccch
Confidence 99999999999999999999999998653 468889999999999999999999999986 7899999999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
+++.++++||+||++|+ .+++|||+|++|+.+.++|+.++..-.
T Consensus 381 ~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~ai~ 424 (463)
T 4dna_A 381 TLSGRKEKTIMKLVVNA-ADRKVVGAHILGHDAGEMAQLLGISLR 424 (463)
T ss_dssp HHHCCCCCEEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHHH
T ss_pred hhcCCCceEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999998 689999999999999999998865443
No 6
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=100.00 E-value=2.9e-63 Score=528.98 Aligned_cols=426 Identities=27% Similarity=0.401 Sum_probs=370.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++||+|||||++|+++|..|+++|++|+|||++.+||+|.+.||+|++.++......+.+ .+...+|++.....+
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~---~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFM---HDHADYGFPSCEGKF 94 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHH---TTTTTTTSCCCCCCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCccchHHHHHHHHHHHHH---HHHHhcCccCCCCcc
Confidence 34699999999999999999999999999999999999999999999999998877766554 345567777666778
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCC--EEEEccceEEEeCeEEEeCCCCCCCC---CCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQ--KVKFGTDNIVTAKDIIIATGSVPFVP---KGIEVDG 253 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~v~~~~~~~~~~d~lViAtG~~p~~p---~~~~~~~ 253 (556)
++..+..+.+...+.+...+...++..+|+++.+.+.+.+.. .|.. ++.++.||+||||||+.|..| +.++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~-~g~~~~~d~lviAtG~~p~~p~~~~i~G~~- 172 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGAS- 172 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE-TTEEEECSCEEECCCEEECCCCTTTSTTGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE-CCEEEEeeEEEEccCCCCCCCCcCCCCCCc-
Confidence 999999999998888888888888999999999998887653 5553 457899999999999999888 555543
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.++++++++.+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+.+.+++ .||++++++.
T Consensus 173 -~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~-~gv~i~~~~~ 250 (478)
T 3dk9_A 173 -LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELEN-AGVEVLKFSQ 250 (478)
T ss_dssp -GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-TTCEEETTEE
T ss_pred -eeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHH-CCCEEEeCCE
Confidence 35677888888889999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCC-CceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEP-KDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~-~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
+++++..+++..+.+.+.+....+. ..++++|.|++|+|++||++.|+++..++.. ++|+|.||+++| |+.|
T Consensus 251 v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~ 324 (478)
T 3dk9_A 251 VKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQN------TNVK 324 (478)
T ss_dssp EEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCB------CSST
T ss_pred EEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcc------cCCC
Confidence 9999876444345677765311110 1579999999999999999987778888876 789999999999 7999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCC--CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEe
Q 008714 412 HLYCIGDANGKMMLAHAASAQGISVVEQVTGR--DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTS 489 (556)
Q Consensus 412 ~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~--~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~ 489 (556)
||||+|||++.+++++.|..||+++|+||++. ....++..+|+++|++|++++||+||+||++++. .+++.+.+.+
T Consensus 325 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~--~~~~~~~~~~ 402 (478)
T 3dk9_A 325 GIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYG--IENVKTYSTS 402 (478)
T ss_dssp TEEECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHC--GGGEEEEEEE
T ss_pred CEEEEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCC--CccEEEEEee
Confidence 99999999999999999999999999999987 3457888999999999999999999999998631 2567888889
Q ss_pred ccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 490 FKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 490 ~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
|..+.++...++++||+||++|+ .+++|||+|++|+.+.++|+.++..-.
T Consensus 403 ~~~~~~~~~~~~~~g~~k~i~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai~ 452 (478)
T 3dk9_A 403 FTPMYHAVTKRKTKCVMKMVCAN-KEEKVVGIHMQGLGCDEMLQGFAVAVK 452 (478)
T ss_dssp ECCGGGGGCSSCCCEEEEEEEET-TTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred cCcchhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 689999999999999999998865543
No 7
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=100.00 E-value=4.4e-63 Score=528.46 Aligned_cols=418 Identities=28% Similarity=0.447 Sum_probs=368.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHH-cCCeEEEec---------CCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhh
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVE-KGLKTAIIE---------GDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK 167 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viE---------k~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~ 167 (556)
|+.++||+|||||+||+++|.+|++ .|++|+||| ++.+||+|.+.||+|+|.+++.+...+.+. +..
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~---~~~ 80 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR---ESA 80 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHH---HHH
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHh---HHH
Confidence 3346899999999999999999999 999999999 688999999999999999998877665553 455
Q ss_pred hcCcccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEecCCEEEEc---c-----ceEEEeCeEE
Q 008714 168 ALGLQVHAA--GYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFG---T-----DNIVTAKDII 236 (556)
Q Consensus 168 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~~~~v~~~---~-----~~~~~~d~lV 236 (556)
.+|+....+ .+++..+..+.+...+.+...+...+++. +|+++.+.+.+.+.++|.+. + ++++.||+||
T Consensus 81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lV 160 (495)
T 2wpf_A 81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHIL 160 (495)
T ss_dssp TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEE
Confidence 677765555 68899999999888888888888888888 99999999988888988886 4 6789999999
Q ss_pred EeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhC---CCeEEEEEeCCCCCCCCCHHHH
Q 008714 237 IATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALDQLMPGFDPEIG 313 (556)
Q Consensus 237 iAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~---g~~Vtli~~~~~ll~~~d~~~~ 313 (556)
||||++|+.|+.++. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+||++++.+++++.+|+++.
T Consensus 161 iATGs~p~~p~i~G~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~ 238 (495)
T 2wpf_A 161 LATGSWPQMPAIPGI--EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 238 (495)
T ss_dssp ECCCEEECCCCCTTG--GGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHH
T ss_pred EeCCCCcCCCCCCCc--cccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHH
Confidence 999999998876654 24677888888888899999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCC
Q 008714 314 KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRG 392 (556)
Q Consensus 314 ~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G 392 (556)
+.+.+.+++ .||++++++.+++++.+++ ..+.+++.+| +++++|.||+|+|++||++.|.++..++.. ++|
T Consensus 239 ~~l~~~l~~-~GV~i~~~~~v~~i~~~~~-~~~~v~~~~G------~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G 310 (495)
T 2wpf_A 239 EEVTKQLTA-NGIEIMTNENPAKVSLNTD-GSKHVTFESG------KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKG 310 (495)
T ss_dssp HHHHHHHHH-TTCEEEESCCEEEEEECTT-SCEEEEETTS------CEEEESEEEECSCEEECCGGGTGGGTTCCBCTTS
T ss_pred HHHHHHHHh-CCCEEEeCCEEEEEEEcCC-ceEEEEECCC------cEEEcCEEEECCCCcccccccchhhcCccCCCCC
Confidence 999999987 8999999999999987533 2366777776 589999999999999999876667888877 589
Q ss_pred ceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHH
Q 008714 393 FVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQ 471 (556)
Q Consensus 393 ~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~ 471 (556)
+|.||+++| |+.|||||+|||++.+++++.|..||++||+||++.. ...+|..+|+++|++|++++||+||+|
T Consensus 311 ~i~Vd~~~~------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~ 384 (495)
T 2wpf_A 311 GVQVDEFSR------TNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEV 384 (495)
T ss_dssp SBCCCTTCB------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHH
T ss_pred CEEECCCCc------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHH
Confidence 999999999 7899999999999988999999999999999999854 456788999999999999999999999
Q ss_pred HHHhhhhcCceEEEEEEeccccchhhhcCCcceE-EEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 472 AREKAEKEGFEVSVAKTSFKANTKALAENEGEGL-AKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 472 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~-~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
|+++ +.++.+.+.+|..+.+++..+++++| +||++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 385 a~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~-~~~~ilG~~~~g~~a~~~i~~~~~ai 448 (495)
T 2wpf_A 385 AAKE----FEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNH-SDGTVLGVHLLGDGAPEIIQAVGVCL 448 (495)
T ss_dssp HHHH----SSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred HHhc----CCCEEEEEEecCchhhhhhcCCCcEEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 9875 67888889999999999988888999 9999998 67999999999999999998886543
No 8
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=100.00 E-value=1.3e-62 Score=524.09 Aligned_cols=421 Identities=32% Similarity=0.507 Sum_probs=365.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
+.++||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++.+. ++..+|++.....
T Consensus 4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~---~~~~~gi~~~~~~ 80 (482)
T 1ojt_A 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR---HLAANGIKYPEPE 80 (482)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHH---HGGGGTCCCCCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHH---HHHhCCcccCCCc
Confidence 3468999999999999999999999999999999 89999999999999999988776665553 3455677655556
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc------------eEEEeCeEEEeCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD------------NIVTAKDIIIATGSVP 243 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~------------~~~~~d~lViAtG~~p 243 (556)
+++..+..+.......+...+...+++.|++++.+.+.+.+.+.+.+. ++ .+++||+||+|||+.|
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p 160 (482)
T 1ojt_A 81 LDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence 788888888777777777777888888999999999887777766653 34 5799999999999999
Q ss_pred CCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCC
Q 008714 244 FVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINP 323 (556)
Q Consensus 244 ~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~ 323 (556)
..|+..+.+. .+++++++..+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.+++
T Consensus 161 ~~~~~i~~~~-~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~- 238 (482)
T 1ojt_A 161 TKLPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEY- 238 (482)
T ss_dssp CCCSSCCCCT-TEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGG-
T ss_pred CCCCCCCccC-cEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHh-
Confidence 8887333333 57888888888888999999999999999999999999999999999999999999999999999987
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcc
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRV 402 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~ 402 (556)
.||++++++.+.+++.+++ .+.+++.+. .++.+++++|.|++|+|++||+++++++..++.. ++|+|.||+++|
T Consensus 239 ~gV~i~~~~~v~~i~~~~~--~~~v~~~~~--~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~- 313 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKED--GVYVTFEGA--NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMR- 313 (482)
T ss_dssp GEEEEECSCEEEEEEEETT--EEEEEEESS--SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSB-
T ss_pred cCCEEEECCEEEEEEEcCC--eEEEEEecc--CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcc-
Confidence 8999999999999987532 356777651 0111578999999999999999887678888877 569999999999
Q ss_pred ccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCce
Q 008714 403 IDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE 482 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~ 482 (556)
|+.|||||+|||++.+++++.|..||++||+||++++.++++..+|+++|++|++++||+||+||++. |++
T Consensus 314 -----t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~----g~~ 384 (482)
T 1ojt_A 314 -----TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKAS----ARK 384 (482)
T ss_dssp -----CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEEEECCHHHHHHH----TCC
T ss_pred -----cCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEEEeCCHHHHHhc----CCC
Confidence 78999999999999999999999999999999999877788889999999999999999999999875 899
Q ss_pred EEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 483 VSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 483 ~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+.+..++|..+.++...++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 440 (482)
T 1ojt_A 385 ITKANFPWAASGRAIANGCDKPFTKLIFDA-ETGRIIGGGIVGPNGGDMIGEVCLAI 440 (482)
T ss_dssp EEEEEEEGGGCHHHHHTTCCSCEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEEEEEcCcchHHhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999999999888889999999997 57999999999999999998886543
No 9
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=100.00 E-value=1.6e-62 Score=523.68 Aligned_cols=415 Identities=27% Similarity=0.430 Sum_probs=371.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+|||||++|+++|+.|+++|++|+|||++.+||+|.+.||+|++.++..+...+.+. ....+|++...+.++
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~---~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFS---KSIGFGWKYADPIFN 101 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHH---HHGGGTBCCCCCEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHH---HHHhCCcccCCCccC
Confidence 36999999999999999999999999999999999999999999999999998887766553 456778877677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc-cceEEEeCeEEEeCCCCCC-CCCCCCCCCCeEe
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG-TDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVI 257 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~-~~~~~~~d~lViAtG~~p~-~p~~~~~~~~~v~ 257 (556)
+..+..+.......+..++...+++.+++++.+.+.+.+.+.+.+. ++.++.||++|+|||+.|. .|+.++.+ .++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--~~~ 179 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSD--LCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG--GSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc--ccc
Confidence 9999998888888888888888999999999999999999999886 6788999999999999998 77766543 367
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++++.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.++++
T Consensus 180 ~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~Gv~i~~~~~V~~i 258 (484)
T 3o0h_A 180 TSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA-KGISIIYEATVSQV 258 (484)
T ss_dssp CTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-HTCEEESSCCEEEE
T ss_pred cHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHH-CCCEEEeCCEEEEE
Confidence 78888888889999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
+.++++ +.+++.+| +++++|.||+|+|++|++..++++..++.. ++|+|.||+++| |+.|||||+
T Consensus 259 ~~~~~~--v~v~~~~g------~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~Iya~ 324 (484)
T 3o0h_A 259 QSTENC--YNVVLTNG------QTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMT------TNVSHIWAV 324 (484)
T ss_dssp EECSSS--EEEEETTS------CEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSB------CSSTTEEEC
T ss_pred EeeCCE--EEEEECCC------cEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCC------CCCCCEEEE
Confidence 875333 57778776 689999999999999999987777788876 779999999999 799999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
|||++.+++++.|..||+++|+||++.. ...++..+|+++|++|++++||+||+||+++ |+++.+.+.+|..+.+
T Consensus 325 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~ 400 (484)
T 3o0h_A 325 GDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHR----YKRVEIYRTVFRPMRN 400 (484)
T ss_dssp GGGGTSCCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHH----CSEEEEEEEEECCHHH
T ss_pred EecCCCCcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHc----CCCEEEEEecCCcchh
Confidence 9999999999999999999999999865 3468889999999999999999999999886 7899999999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+++.++++||+||++|+ .+++|||+|++|+.+.++|+.++..-
T Consensus 401 ~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~ai 443 (484)
T 3o0h_A 401 VLSGSPEKMFMKLVVDG-ESRIVVGAHVLGENAGEIAQLIGISL 443 (484)
T ss_dssp HHHTCCCCEEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEEEEEC-CCCEEEEEEEECcCHHHHHHHHHHHH
Confidence 99999999999999998 68999999999999999998875543
No 10
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=100.00 E-value=3.4e-62 Score=521.28 Aligned_cols=415 Identities=26% Similarity=0.421 Sum_probs=366.7
Q ss_pred CccEEEECCChHHHHHHHHHHH-cCCeEEEec---------CCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE-KGLKTAIIE---------GDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG 170 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viE---------k~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g 170 (556)
+|||+|||||++|+++|.+|++ .|++|+||| ++.+||+|.+.||+|+|.+++.+...+.++ +...+|
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g 79 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR---ESAGFG 79 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH---HGGGGT
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHH---HHHhcC
Confidence 5899999999999999999999 999999999 688999999999999999998887766553 455677
Q ss_pred cccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEecCCEEEEc-----cc---eEEEeCeEEEeC
Q 008714 171 LQVHAA--GYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFG-----TD---NIVTAKDIIIAT 239 (556)
Q Consensus 171 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~~~~v~~~-----~~---~~~~~d~lViAt 239 (556)
+....+ .+++..+..+.+.....+...+...+++. ||+++.+.+.+++.+++.+. ++ .++.||+|||||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAt 159 (490)
T 1fec_A 80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT 159 (490)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence 765444 67899999988888888888888888888 99999999988888888874 55 689999999999
Q ss_pred CCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhC---CCeEEEEEeCCCCCCCCCHHHHHHH
Q 008714 240 GSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALDQLMPGFDPEIGKLA 316 (556)
Q Consensus 240 G~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~---g~~Vtli~~~~~ll~~~d~~~~~~~ 316 (556)
|+.|..|+.++. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+||++++.+++++.+|+++.+.+
T Consensus 160 Gs~p~~p~i~g~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l 237 (490)
T 1fec_A 160 GSWPQHLGIEGD--DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQL 237 (490)
T ss_dssp CEEECCCCSBTG--GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHH
T ss_pred CCCCCCCCCCCc--cceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHH
Confidence 999998876654 24678888888888899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCcee
Q 008714 317 QRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVP 395 (556)
Q Consensus 317 ~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~ 395 (556)
.+.+++ .||++++++.+++++.++++ .+.+++.+| +++++|.||+|+|++||++.|.++..++.. ++|+|.
T Consensus 238 ~~~l~~-~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G------~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~ 309 (490)
T 1fec_A 238 TEQLRA-NGINVRTHENPAKVTKNADG-TRHVVFESG------AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIK 309 (490)
T ss_dssp HHHHHH-TTEEEEETCCEEEEEECTTS-CEEEEETTS------CEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBC
T ss_pred HHHHHh-CCCEEEeCCEEEEEEEcCCC-EEEEEECCC------cEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEE
Confidence 999987 89999999999999875332 366777766 589999999999999999876667888877 589999
Q ss_pred eCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHH
Q 008714 396 VDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQARE 474 (556)
Q Consensus 396 vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~ 474 (556)
||+++| |+.|+|||+|||++.+++++.|..||+++|+||++.. ...+|..+|+++|++|++++||+||+||++
T Consensus 310 Vd~~~~------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~ 383 (490)
T 1fec_A 310 VDAYSK------TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAK 383 (490)
T ss_dssp CCTTCB------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHH
T ss_pred ECCCCc------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHh
Confidence 999999 7899999999999988999999999999999999854 456788999999999999999999999987
Q ss_pred hhhhcCceEEEEEEeccccchhhhcCCcceEE-EEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 475 KAEKEGFEVSVAKTSFKANTKALAENEGEGLA-KGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~-kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+ +.++.+.+.+|..+.+++..+.+++|+ ||++++ .+++|||+|++|+.+.++|+.++.+.
T Consensus 384 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~-~~~~ilG~~~~g~~a~~~i~~~~~ai 444 (490)
T 1fec_A 384 K----YDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNH-ADGEVLGVHMLGDSSPEIIQSVAICL 444 (490)
T ss_dssp H----CSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEET-TTTEEEEEEEESTTHHHHHHHHHHHH
T ss_pred c----CCCEEEEEeecChhhhhhhcCCCeEEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 5 678888899999999999888889999 999998 67999999999999999998886543
No 11
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=100.00 E-value=2e-62 Score=521.92 Aligned_cols=424 Identities=32% Similarity=0.533 Sum_probs=365.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||+||+++|..|+++|++|+|||+ +.+||+|.+.+|+|+|.++.....++.+.. ..+..+|++.....+
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHG-TDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHS-SHHHHTTEEESCEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhh-hhHhhCccccCCCcc
Confidence 358999999999999999999999999999999 589999999999999999887665554420 134566776544567
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--cc-c-eEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GT-D-NIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~-~-~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
++..+..+.+.+.+.+...+...+++.+|+++.+.+.+.+.+.+.+ .+ + +++.||+||+|||++|..|++++.++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~ 163 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDED 163 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcC
Confidence 8888888888888888777788888899999999988777766554 33 3 579999999999999999887777666
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-CCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-GFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.++++++...+...|++++|||+|++|+|+|..|.+.|.+||++++.+++++ .+++++.+.+.+.+++ .||++++++.
T Consensus 164 ~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~i~~~~~ 242 (474)
T 1zmd_A 164 TIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQK-QGFKFKLNTK 242 (474)
T ss_dssp SEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHH-TTCEEECSEE
T ss_pred cEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHH-CCCEEEeCce
Confidence 6889988888888899999999999999999999999999999999999999 8999999999999987 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPH 412 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~ 412 (556)
+++++.++++ .+.+++.+.. .++..++++|.|++|+|++||++.+.++..++.. ++|+|.||++|| |+.|+
T Consensus 243 v~~i~~~~~~-~~~v~~~~~~-~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~ 314 (474)
T 1zmd_A 243 VTGATKKSDG-KIDVSIEAAS-GGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ------TKIPN 314 (474)
T ss_dssp EEEEEECTTS-CEEEEEEETT-SCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCB------CSSTT
T ss_pred EEEEEEcCCc-eEEEEEEecC-CCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCc------cCCCC
Confidence 9999875332 2455553210 0122679999999999999999887667777776 579999999999 78999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccc
Q 008714 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 492 (556)
Q Consensus 413 Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~ 492 (556)
|||+|||++.+++++.|..||++||+||++++.+++|..+|+++|++|++++||+||+||++. |+++.+.+.+|..
T Consensus 315 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~~~~ 390 (474)
T 1zmd_A 315 IYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEE----GIEYKVGKFPFAA 390 (474)
T ss_dssp EEECGGGSSSCCCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEEEECCHHHHHHH----TCCEEEEEEEGGG
T ss_pred EEEeeecCCCCccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhc----CCCEEEEEEeccc
Confidence 999999999999999999999999999999877778889999999999999999999999875 8999999999999
Q ss_pred cchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 493 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 493 ~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+.++...++++||+|+++++ .+++|||+|++|+.+.++|+.++.+
T Consensus 391 ~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 435 (474)
T 1zmd_A 391 NSRAKTNADTDGMVKILGQK-STDRVLGAHILGPGAGEMVNEAALA 435 (474)
T ss_dssp CHHHHHTTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred chhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 99999888889999999998 5799999999999999988777654
No 12
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=100.00 E-value=3.1e-62 Score=519.73 Aligned_cols=418 Identities=31% Similarity=0.507 Sum_probs=364.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc-ccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-HAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 178 (556)
++||+|||||+||++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.++......+.+.. .+..+|++. ....+
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHA--NFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--THHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHH--HHHhcCcccCCCCcc
Confidence 48999999999999999999999999999999 589999999999999999887766655431 144566654 34456
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
++..+..+.+...+.+...+...+++.+++++.+.+.+.+.+.+.+ .++ .++.||+||+|||+.|..|+.++.+..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~ 159 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEK 159 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcC
Confidence 8888888888888888777788888899999999988777766554 455 689999999999999998887776655
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHH-hCCCceEEEcCce
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL-INPRKIDYHTGVF 333 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l-~~~~gV~~~~~~~ 333 (556)
.+++++++..+...+++++|||+|++|+|+|..|.+.|.+||++++.+++++.+|+++.+.+.+.+ ++ .||++++++.
T Consensus 160 ~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-~gv~i~~~~~ 238 (468)
T 2qae_A 160 VVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKN-EKMKFMTSTK 238 (468)
T ss_dssp SEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHH-TCCEEECSCE
T ss_pred ceechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhc-CCcEEEeCCE
Confidence 688999988888889999999999999999999999999999999999999999999999999999 87 8999999999
Q ss_pred EEEEEecCCCCeEEEEEe--cCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcC
Q 008714 334 ATKITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 410 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~ 410 (556)
+++++.++++ +.+.+. +| +.+++++|.|++|+|++||+++++++..++.. ++|+|.||+++| |+.
T Consensus 239 v~~i~~~~~~--~~v~~~~~~g----~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~------t~~ 306 (468)
T 2qae_A 239 VVGGTNNGDS--VSLEVEGKNG----KRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE------TSI 306 (468)
T ss_dssp EEEEEECSSS--EEEEEECC-------EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB------CSS
T ss_pred EEEEEEcCCe--EEEEEEcCCC----ceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc------cCC
Confidence 9999875333 556665 33 22579999999999999999987667777776 579999999999 789
Q ss_pred CCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEe
Q 008714 411 PHLYCIGDANG-KMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTS 489 (556)
Q Consensus 411 ~~Vya~GD~~~-~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~ 489 (556)
|||||+|||++ .+++++.|..||++||+||++++.++++..+|+++|++|++++||+||+||++. |+++.+.+++
T Consensus 307 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~ 382 (468)
T 2qae_A 307 PDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDELKKE----GVAYKVGKFP 382 (468)
T ss_dssp TTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEE
T ss_pred CCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhc----CCCEEEEEEe
Confidence 99999999999 899999999999999999999877788889999999999999999999999874 8999999999
Q ss_pred ccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 490 FKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 490 ~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
|..+.++.+.++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 383 ~~~~~~~~~~~~~~~~~kl~~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 430 (468)
T 2qae_A 383 FNANSRAKAVSTEDGFVKVLVDK-ATDRILGVHIVCTTAGELIGEACLA 430 (468)
T ss_dssp GGGCHHHHHTTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred cccchhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 99999999888889999999997 5799999999999999999887654
No 13
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=100.00 E-value=1.6e-62 Score=518.65 Aligned_cols=416 Identities=30% Similarity=0.474 Sum_probs=363.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.++||+|||||++|+++|.+|++.|++|+|||++.+||+|.+.||+|+|.+++.+.....++ .+...++++.....++
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~--~~~~~~g~~~~~~~~~ 80 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIH--MYGPDYGFDTTINKFN 80 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHH--TTGGGGTEEEEEEEEC
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHH--HHHHhcCccCCCCccC
Confidence 35899999999999999999999999999999999999999999999999988776655543 1334566665556688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
+..+..+.+...+.+...+...+++.+++++.+.+...+.+.|.+ +++++.||+||||||+.|..|+.++.+ .++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~--~~~~~ 157 (450)
T 1ges_A 81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVE--YGIDS 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCcc--ceecH
Confidence 988988888888888888888888899999999988888888888 567899999999999999988766542 35677
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
+++..+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+++++.
T Consensus 158 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~ 236 (450)
T 1ges_A 158 DGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA-EGPQLHTNAIPKAVVK 236 (450)
T ss_dssp HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-HSCEEECSCCEEEEEE
T ss_pred HHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHH-CCCEEEeCCEEEEEEE
Confidence 888788888999999999999999999999999999999999999999999999999999987 8999999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecc
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD 418 (556)
++++ .+.+++.+| +++++|.||+|+|++||++.|.++..++.. ++|+|.||+++| |+.|||||+||
T Consensus 237 ~~~~-~~~v~~~~g------~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~------t~~~~IyA~GD 303 (450)
T 1ges_A 237 NTDG-SLTLELEDG------RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQN------TNIEGIYAVGD 303 (450)
T ss_dssp CTTS-CEEEEETTS------CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSB------CSSTTEEECSG
T ss_pred eCCc-EEEEEECCC------cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCc------cCCCCEEEEec
Confidence 5333 356777776 589999999999999999866667777776 589999999999 79999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhCCC-cc-CCCCCccEEEecccceeEecCCHHHHHHhhhhcC-ceEEEEEEeccccch
Q 008714 419 ANGKMMLAHAASAQGISVVEQVTGRD-HV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG-FEVSVAKTSFKANTK 495 (556)
Q Consensus 419 ~~~~~~~~~~A~~qg~~aa~~i~g~~-~~-~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~-~~~~~~~~~~~~~~~ 495 (556)
|++.+++++.|..||+++|+||++.. .. .+|..+|+++|++|++++||+||+||++.+ | .++.+.+.+|..+.+
T Consensus 304 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~---g~~~~~~~~~~~~~~~~ 380 (450)
T 1ges_A 304 NTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQY---GDDQVKVYKSSFTAMYT 380 (450)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHH---CGGGEEEEEEEEECHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcC---CCCcEEEEEEECchhhH
Confidence 99989999999999999999999854 34 678889999999999999999999998753 4 578888999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+...+.+++|+|+++++ .+++|||+|++|+.+.++|+.++..
T Consensus 381 ~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 422 (450)
T 1ges_A 381 AVTTHRQPCRMKLVCVG-SEEKIVGIHGIGFGMDEMLQGFAVA 422 (450)
T ss_dssp HTSSSCCEEEEEEEEET-TTTEEEEEEEESTTHHHHHHHHHHH
T ss_pred HHhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 99888889999999998 6799999999999999999988654
No 14
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=100.00 E-value=3.9e-62 Score=517.77 Aligned_cols=412 Identities=35% Similarity=0.564 Sum_probs=361.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
++||+|||||+||+++|..|+++|++|+|||++.+||+|.+.+|+|+|.+++....++.+. ....+|++ ....+++
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~---~~~~~g~~-~~~~~~~ 81 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLK---VAEGFGLK-AKPELDL 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHH---HHGGGTEE-CCCEECH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHH---hHHhcCCC-CCCCcCH
Confidence 5899999999999999999999999999999977999999999999999988776665553 34566776 4456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCC-CCCCCCCeEecc
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPK-GIEVDGKTVITS 259 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~-~~~~~~~~v~t~ 259 (556)
..+..+.+...+.+...+...+++.||+++.+.+.+.+.++|.+. ++++.||+||+|||++|..|+ .++ ++ .++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~-~~-~v~~~ 158 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPF-GE-DVWDS 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCC-SS-SEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCC-CC-cEEcH
Confidence 888888877777777777778888999999999888888888887 578999999999999999886 333 22 47888
Q ss_pred cccccCCC-CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 260 DHALKLEF-VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 260 ~~~~~~~~-~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
+++..+.. .|++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+++++
T Consensus 159 ~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gV~i~~~~~v~~i~ 237 (464)
T 2eq6_A 159 TRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEK-EGIRVRTKTKAVGYE 237 (464)
T ss_dssp HHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-TTCEEECSEEEEEEE
T ss_pred HHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHh-cCCEEEcCCEEEEEE
Confidence 88888776 8999999999999999999999999999999999999999999999999999987 899999999999998
Q ss_pred ecCCCCeEEEEEe-c--CCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEE
Q 008714 339 PAKDGKPVTIELI-D--AKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414 (556)
Q Consensus 339 ~~~~g~~~~v~~~-~--g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vy 414 (556)
.++ ..+.+++. + | +..++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |+.|+||
T Consensus 238 ~~~--~~~~v~~~~~~~g----~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~Iy 305 (464)
T 2eq6_A 238 KKK--DGLHVRLEPAEGG----EGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARME------TSVPGVY 305 (464)
T ss_dssp EET--TEEEEEEEETTCC----SCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCB------CSSTTEE
T ss_pred EeC--CEEEEEEeecCCC----ceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcc------cCCCCEE
Confidence 753 23566665 4 4 12379999999999999999877667777776 689999999999 7899999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccc
Q 008714 415 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANT 494 (556)
Q Consensus 415 a~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~ 494 (556)
|+|||++.+++++.|..||+++|+||++.+..+++. +|+++|++|++++||+||+||++. |+++.+.+.+|..+.
T Consensus 306 a~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~~~~~~ 380 (464)
T 2eq6_A 306 AIGDAARPPLLAHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRA----GYKVKVGKFPLAASG 380 (464)
T ss_dssp ECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCC-CCEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEEGGGCH
T ss_pred EEeccCCCcccHHHHHHHHHHHHHHhcCCCcccCCC-CCeEEECCCCEEEEeCCHHHHHhc----CCCEEEEEEEcCcch
Confidence 999999999999999999999999999987777888 999999999999999999999875 899999999999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
++...++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 381 ~~~~~~~~~g~~k~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 423 (464)
T 2eq6_A 381 RALTLGGAEGMVKVVGDE-ETDLLLGVFIVGPQAGELIAEAALA 423 (464)
T ss_dssp HHHHTSCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred hhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 999888889999999998 5799999999999999998877654
No 15
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=1.2e-61 Score=513.44 Aligned_cols=418 Identities=31% Similarity=0.540 Sum_probs=363.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
++||+|||||+||+++|.+|++.|++|+|||++.+||+|.+.+|+|++.++.....++.+. ++..+|++.....+++
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~---~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAK---HSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHH---TCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHH---HHHhcCcccCCCccCH
Confidence 4899999999999999999999999999999999999999999999999987776665543 3455676655556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc-eEEEeCeEEEeCCCCCCCCCCCCCCCCeEe
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD-NIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~-~~~~~d~lViAtG~~p~~p~~~~~~~~~v~ 257 (556)
..+..+.+...+.+...+...+++.|++++.+.+.+.+.+.+.+ .++ .++.||+||+|||++|..|+.++.+.. ++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~-v~ 158 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR-IL 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSS-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccce-Ee
Confidence 88877777777778777888888899999999988777665544 445 679999999999999998877666544 78
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++...+...+++++|||+|++|+|+|..|++.|.+|+++++.++++|.+++++.+.+.+.+++ .||++++++.++++
T Consensus 159 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gv~i~~~~~v~~i 237 (455)
T 1ebd_A 159 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKK-KGVEVVTNALAKGA 237 (455)
T ss_dssp CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH-TTCEEEESEEEEEE
T ss_pred cHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHH-CCCEEEeCCEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
+.+++ .+.+++.+. ++..++++|.|++|+|++||++.++++..++.. ++|+|.||+++| |+.|+|||+
T Consensus 238 ~~~~~--~~~v~~~~~---g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~------t~~~~Iya~ 306 (455)
T 1ebd_A 238 EERED--GVTVTYEAN---GETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR------TSVPNIFAI 306 (455)
T ss_dssp EEETT--EEEEEEEET---TEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCB------CSSTTEEEC
T ss_pred EEeCC--eEEEEEEeC---CceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcc------cCCCCEEEE
Confidence 87532 255665421 112579999999999999999987667788876 579999999999 789999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchh
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKA 496 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a 496 (556)
|||++.+++++.|..||++||+||++++.++++..+|+++|++|++++||+||+||++. |+++.+.+.+|..+.|+
T Consensus 307 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~~~~~~~~ 382 (455)
T 1ebd_A 307 GDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDE----GIDVIAAKFPFAANGRA 382 (455)
T ss_dssp GGGSSSCCCHHHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHTT----TCCEEEEEEEGGGCHHH
T ss_pred eccCCCcccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhc----CCCEEEEEEEcCcchHH
Confidence 99999999999999999999999999877788889999999999999999999999864 89999999999999999
Q ss_pred hhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 497 LAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 497 ~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+.++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 383 ~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 424 (455)
T 1ebd_A 383 LALNDTDGFLKLVVRK-EDGVIIGAQIIGPNASDMIAELGLAI 424 (455)
T ss_dssp HHHTCCCCEEEEEEET-TTTEEEEEEEESTTHHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEEEC-CCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 9888889999999997 57999999999999999998886543
No 16
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=100.00 E-value=8.1e-62 Score=514.95 Aligned_cols=414 Identities=30% Similarity=0.463 Sum_probs=361.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.++||+|||||++|+++|.+|++.|++|+|||++.+||+|.+.+|+|++.+++.+.....++ +...+|+......++
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~---~~~~~g~~~~~~~~~ 79 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVR---DAPGFGVQASGGTLD 79 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHH---HGGGGTBCCC---CC
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHh---hhhhcCcccCCCCcC
Confidence 45899999999999999999999999999999998999999999999999988776665553 344567665555678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
+..+..+.+.....+...+...+++.||+++.+.+...+.+.|.+ ++.++.||+||||||+.|..|+.++.+ .++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~--~~~~~ 156 (463)
T 2r9z_A 80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAE--LGITS 156 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCcc--ceecH
Confidence 888888888888888888888888899999999988888888888 567899999999999999888765542 35677
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+++++.
T Consensus 157 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gv~i~~~~~v~~i~~ 235 (463)
T 2r9z_A 157 DGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHA-QGIETHLEFAVAALER 235 (463)
T ss_dssp HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-TTCEEESSCCEEEEEE
T ss_pred HHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEE
Confidence 777777788999999999999999999999999999999999999999999999999999987 8999999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCc-eEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEec
Q 008714 340 AKDGKPVTIELIDAKTKEPKD-TLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 417 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~-~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~G 417 (556)
++++ +.+++.+| + ++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |+.|||||+|
T Consensus 236 ~~~~--~~v~~~~G------~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~------t~~~~Iya~G 301 (463)
T 2r9z_A 236 DAQG--TTLVAQDG------TRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQN------TNVPGVYALG 301 (463)
T ss_dssp ETTE--EEEEETTC------CEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSB------CSSTTEEECG
T ss_pred eCCe--EEEEEeCC------cEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCc------cCCCCEEEEe
Confidence 5333 66777776 5 79999999999999999866666677766 589999999999 7999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHhCCC-cc-CCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 418 DANGKMMLAHAASAQGISVVEQVTGRD-HV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 418 D~~~~~~~~~~A~~qg~~aa~~i~g~~-~~-~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
||++.+++++.|..||+++|.||+|.. .. .+|..+|+++|++|++++||+||+||++++ |.++.+.+.+|..+.+
T Consensus 302 D~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~---g~~~~~~~~~~~~~~~ 378 (463)
T 2r9z_A 302 DITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERL---GDVLTVYETSFTPMRY 378 (463)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHH---CSCEEEEEEEECCGGG
T ss_pred ecCCCcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcC---CCCEEEEEEEcccchh
Confidence 999989999999999999999999864 33 678889999999999999999999998753 5778888999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+...+.+++|+|+++++ .+++|||+|++|+.+.++|+.++..
T Consensus 379 ~~~~~~~~~~~klv~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 420 (463)
T 2r9z_A 379 ALNEHGPKTAMKLVCAG-PEQRVVGVHVIGDGADEMLQGFAVA 420 (463)
T ss_dssp TTSSSCCCEEEEEEEET-TTTEEEEEEEESTTGGGTSHHHHHH
T ss_pred hhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 99888889999999997 5789999999999999999887653
No 17
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=100.00 E-value=2.1e-61 Score=517.11 Aligned_cols=415 Identities=26% Similarity=0.436 Sum_probs=362.8
Q ss_pred CccEEEECCChHHHHHHHHHHHc---CCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc--ccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK---GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ--VHA 175 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~--~~~ 175 (556)
++||+|||||++|+++|.+|+++ |++|+|||++.+||+|.+.+|+|+|.++..+..++.+. .+..+|++ ...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~---~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELR---RAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHT---TTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHH---HHHhCCCccccCC
Confidence 48999999999999999999999 99999999966999999999999999988776665442 34456665 334
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecC------CEEEE--ccce--EEEeCeEEEeCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP------QKVKF--GTDN--IVTAKDIIIATGSVPFV 245 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~------~~v~~--~~~~--~~~~d~lViAtG~~p~~ 245 (556)
..+++..+..+.+.....+...+.+.+++.|++++.+.+.+++. +.+.+ .++. ++.||+||+|||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~ 158 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI 158 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence 45788888888888888888888888888999999999877766 55544 4454 79999999999999998
Q ss_pred CCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCc
Q 008714 246 PKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 246 p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~g 325 (556)
|+.++.+...++++++...+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++ .|
T Consensus 159 p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~G 237 (499)
T 1xdi_A 159 LPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAE-RG 237 (499)
T ss_dssp CGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHH-TT
T ss_pred CCCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHH-CC
Confidence 88777666668888888888888999999999999999999999999999999999999999999999999999987 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcccc
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVID 404 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~ 404 (556)
|++++++.+++++.++++ +.+++.++ +++++|.||+|+|++||+++++++..++.. ++|+|.||+++|
T Consensus 238 V~i~~~~~V~~i~~~~~~--v~v~~~~g------~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~--- 306 (499)
T 1xdi_A 238 VRLFKNARAASVTRTGAG--VLVTMTDG------RTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR--- 306 (499)
T ss_dssp CEEETTCCEEEEEECSSS--EEEEETTS------CEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB---
T ss_pred CEEEeCCEEEEEEEeCCE--EEEEECCC------cEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcc---
Confidence 999999999999875332 56666555 689999999999999999987778888876 579999999999
Q ss_pred CCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceE
Q 008714 405 ANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483 (556)
Q Consensus 405 ~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~ 483 (556)
|+.|+|||+|||++.+++++.|..||+++|+||+|+ ...+++..+|+++|++|++++||+||+||++. |+++
T Consensus 307 ---t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~ 379 (499)
T 1xdi_A 307 ---TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAG----SVAA 379 (499)
T ss_dssp ---CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHT----SSCE
T ss_pred ---cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhC----CCCE
Confidence 789999999999999999999999999999999997 45677888999999999999999999999874 8999
Q ss_pred EEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 484 SVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
.+.+.+|..+.++.+.++++||+|+++++ .+++|||+|++|+.+.++|+.++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~g~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 433 (499)
T 1xdi_A 380 RTIMLPLRTNARAKMSEMRHGFVKIFCRR-STGVVIGGVVVAPIASELILPIAVA 433 (499)
T ss_dssp EEEEEESTTSHHHHHTTCSSCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred EEEEEecCcccceeecCCCceEEEEEEEC-CCCEEEEEEEECCchHHHHHHHHHH
Confidence 99999999999999988889999999998 5799999999999999988877654
No 18
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=1.9e-61 Score=514.23 Aligned_cols=423 Identities=33% Similarity=0.534 Sum_probs=365.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++.+.. .+..+|++.....+
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~--~~~~~g~~~~~~~~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH--SFANHGVKVSNVEI 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHH--THHHHTEEESCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHH--HHHhcCcccCCCcc
Confidence 358999999999999999999999999999999 589999999999999998877666555432 14456665444456
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
++..+..+.+...+.+...+...+++.+++++.+.+...+.+.+.+. ++ .+++||+||+|||++|..|+.++.+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~ 162 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEK 162 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcc
Confidence 78888777777777777777778888899999999887777666653 45 679999999999999998887776655
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.++++++...+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+
T Consensus 163 ~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~gv~i~~~~~v 241 (470)
T 1dxl_A 163 KIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEK-QGMKFKLKTKV 241 (470)
T ss_dssp SEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-SSCCEECSEEE
T ss_pred cEEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHH-cCCEEEeCCEE
Confidence 68888888888888999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
.+++.++++ +.+++.+.. +++.+++++|.|++|+|++||++.++++..++.. ++|+|.||+++| |+.|+|
T Consensus 242 ~~i~~~~~~--~~v~~~~~~-~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~------t~~~~I 312 (470)
T 1dxl_A 242 VGVDTSGDG--VKLTVEPSA-GGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFS------TNVSGV 312 (470)
T ss_dssp EEEECSSSS--EEEEEEESS-SCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCB------CSSTTE
T ss_pred EEEEEcCCe--EEEEEEecC-CCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCc------cCCCCE
Confidence 999865332 556665210 0123579999999999999999987778888876 579999999999 789999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecccc
Q 008714 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 493 (556)
Q Consensus 414 ya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 493 (556)
||+|||++.+++++.|..||++||+||++++.+++|..+|+++|++|++++||+||+||++. |+++.+..++|..+
T Consensus 313 ya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~~~~~ 388 (470)
T 1dxl_A 313 YAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKET----GVEYRVGKFPFMAN 388 (470)
T ss_dssp EECSTTSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEEGGGC
T ss_pred EEEeccCCCCccHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEEEcCCHHHHHhc----CCcEEEEEEecccc
Confidence 99999999999999999999999999999877788889999999999999999999999874 89999999999999
Q ss_pred chhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 494 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 494 ~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.++.+.++++||+|+++|+ .+++|+|+|++|+.+.++|+.++.+.
T Consensus 389 ~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~ai 433 (470)
T 1dxl_A 389 SRAKAIDNAEGLVKIIAEK-ETDKILGVHIMAPNAGELIHEAAIAL 433 (470)
T ss_dssp HHHHHHSCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHHH
T ss_pred hHHHhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 9999888889999999997 57999999999999999998886543
No 19
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=100.00 E-value=2.3e-61 Score=514.50 Aligned_cols=426 Identities=30% Similarity=0.489 Sum_probs=363.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc-cccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-HAAG 177 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 177 (556)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.+|+|++.++.....++.+. ..+..+|++. ....
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~--~~~~~~gi~~~~~~~ 81 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMH--TEAQKRGIDVNGDIK 81 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHH--HTSGGGTEEECSCEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHH--HHHHhcCcccCCCCc
Confidence 358999999999999999999999999999999 89999999999999999988777666553 1344556654 3345
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eE------EEeCeEEEeCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NI------VTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~------~~~d~lViAtG~~p~~p~ 247 (556)
+++..+..+.....+.+...+...+++.||+++.+...+.+.+.+.+ .++ .+ +.||+||+|||++|..++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~ 161 (478)
T 1v59_A 82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFP 161 (478)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCC
Confidence 68888888888888888777888888899999999988777666554 344 46 999999999999986555
Q ss_pred CCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 248 GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 248 ~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
+.+..+..+++++++..+...|++++|||+|++|+|+|..|++.|.+||++++.+++++.+++++.+.+.+.+++ .||+
T Consensus 162 g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gv~ 240 (478)
T 1v59_A 162 GIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKK-QGLD 240 (478)
T ss_dssp TCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHH-TTCE
T ss_pred CCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHH-CCCE
Confidence 555555568899998888888999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDAN 406 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~ 406 (556)
+++++.+++++..+++..+.+++.+.. .++.+++++|.|++|+|++||++.+.++..++.. ++|+|.||+++|
T Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~~~-~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~----- 314 (478)
T 1v59_A 241 FKLSTKVISAKRNDDKNVVEIVVEDTK-TNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN----- 314 (478)
T ss_dssp EECSEEEEEEEEETTTTEEEEEEEETT-TTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB-----
T ss_pred EEeCCEEEEEEEecCCCeEEEEEEEcC-CCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCc-----
Confidence 999999999986212334566665210 0112579999999999999999865567788876 589999999999
Q ss_pred CCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEE
Q 008714 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVA 486 (556)
Q Consensus 407 ~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~ 486 (556)
|+.|||||+|||++.+++++.|..||++||+||++.+.+++|..+|+++|++|+++++|+||+||++. |+++.+.
T Consensus 315 -t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~ 389 (478)
T 1v59_A 315 -SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEA----GIDYKIG 389 (478)
T ss_dssp -CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHT----TCCEEEE
T ss_pred -cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHc----CCCEEEE
Confidence 78999999999999999999999999999999998776678889999999999999999999999874 8999999
Q ss_pred EEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 487 KTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 487 ~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
.++|..+.++...++++|++|+++++ .+++|+|+|++|+.+.++|+.++.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~~i~ 442 (478)
T 1v59_A 390 KFPFAANSRAKTNQDTEGFVKILIDS-KTERILGAHIIGPNAGEMIAEAGLALE 442 (478)
T ss_dssp EEEGGGCHHHHHTTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHHHH
T ss_pred EEecccchhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 99999999998888889999999997 579999999999999988887765443
No 20
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=100.00 E-value=1.4e-61 Score=514.16 Aligned_cols=417 Identities=32% Similarity=0.479 Sum_probs=361.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
++||+|||||+||+++|..|++.|++|+|||+..+||+|.+.+|+|++.++.....++.+. .+...+|++ ....+++
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~--~~~~~~g~~-~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFT--KDAKAFGIS-GEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHH--HHTTTTTEE-ECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHH--HHHHhcCCC-CCCccCH
Confidence 4899999999999999999999999999999988999999999999999988777666553 234456665 3445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
..+..+.......+...+.+.+++.||+++.+.....+.+.+.+ .++ .++.||+||+|||+.|..|+.++.+.. +
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~-~ 158 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-V 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTT-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCce-E
Confidence 77777777777777777788888899999999988777665554 455 689999999999999988876665544 7
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+++++...+...+++++|||+|++|+|+|..|.+.|.+||++++.++++|.+++++.+.+.+.+++ .||++++++.+++
T Consensus 159 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gv~i~~~~~v~~ 237 (464)
T 2a8x_A 159 VTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKK-LGVTILTATKVES 237 (464)
T ss_dssp ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-HTCEEECSCEEEE
T ss_pred EecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHH-cCCEEEeCcEEEE
Confidence 888888888888999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred EEecCCCCeEEEEEe-cCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEE
Q 008714 337 ITPAKDGKPVTIELI-DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414 (556)
Q Consensus 337 i~~~~~g~~~~v~~~-~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vy 414 (556)
++.++++ +.+.+. +| +.+++++|.|++|+|++||+++++++..++.. ++|+|.||+++| |+.||||
T Consensus 238 i~~~~~~--~~v~~~~~g----~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~------t~~~~Iy 305 (464)
T 2a8x_A 238 IADGGSQ--VTVTVTKDG----VAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMR------TNVGHIY 305 (464)
T ss_dssp EEECSSC--EEEEEESSS----CEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSB------CSSTTEE
T ss_pred EEEcCCe--EEEEEEcCC----ceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCc------cCCCCEE
Confidence 9875332 556665 33 22579999999999999999987667777776 579999999999 7899999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhC-CCcc-CCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccc
Q 008714 415 CIGDANGKMMLAHAASAQGISVVEQVTG-RDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 492 (556)
Q Consensus 415 a~GD~~~~~~~~~~A~~qg~~aa~~i~g-~~~~-~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~ 492 (556)
|+|||++.+++++.|..||++||+||++ ++.+ ++|..+|+++|++|++++||+||+||++. |+++.+...+|..
T Consensus 306 A~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g~~~~~~~~~~~~ 381 (464)
T 2a8x_A 306 AIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNE----GYDVVVAKFPFTA 381 (464)
T ss_dssp ECGGGGCSSCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEEGGG
T ss_pred EeECcCCCccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhc----CCCEEEEEEEcch
Confidence 9999999999999999999999999998 6666 67888999999999999999999999874 8999999999999
Q ss_pred cchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 493 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 493 ~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+.|+.+.++++||+|+++|+ .+++|+|+|++|+.+.++|+.++.+.
T Consensus 382 ~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 427 (464)
T 2a8x_A 382 NAKAHGVGDPSGFVKLVADA-KHGELLGGHLVGHDVAELLPELTLAQ 427 (464)
T ss_dssp CHHHHHHTCCCCEEEEEEET-TTTEEEEEEEEETTGGGGHHHHHHHH
T ss_pred hhhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECcCHHHHHHHHHHHH
Confidence 99999888889999999997 57999999999999999988876543
No 21
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.9e-61 Score=514.57 Aligned_cols=413 Identities=26% Similarity=0.407 Sum_probs=346.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
++||+|||||+||+++|.+|++.|++|+|||++.+||+|.+.+|+|++.++..+.....+. ....+|+... ..+++
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~---~~~~~g~~~~-~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILE---NSRHYGFDTK-FSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHH---HGGGGTCCCC-CCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHH---hhHhcCCccC-CccCH
Confidence 4899999999999999999999999999999988999999999999999887766555543 3445666544 56788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc-------------ceEEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT-------------DNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~-------------~~~~~~d~lViAtG~~p~~p~ 247 (556)
+.+..+.+.....+...+...+++.||+++.+.+...+.+.+.+.+ +.++.||+||||||+.|..|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~ 157 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPP 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCC
Confidence 8888888777777777777888889999999987666666666643 567999999999999999887
Q ss_pred CCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 248 GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 248 ~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
.++.+ .+++++++..+.. +++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+.+.+++ .||+
T Consensus 158 i~G~~--~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~gv~ 233 (500)
T 1onf_A 158 VKGIE--NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKK-NNIN 233 (500)
T ss_dssp CTTGG--GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-TTCE
T ss_pred CCCCC--cccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHh-CCCE
Confidence 66542 3667777777766 999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCce-EecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT-LEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~-i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~ 406 (556)
+++++.+++++.++++ .+.+++.+| ++ +++|.|++|+|++||++.|.++..++..++|+|.||+++|
T Consensus 234 i~~~~~v~~i~~~~~~-~~~v~~~~g------~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~----- 301 (500)
T 1onf_A 234 IVTFADVVEIKKVSDK-NLSIHLSDG------RIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQR----- 301 (500)
T ss_dssp EECSCCEEEEEESSTT-CEEEEETTS------CEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCB-----
T ss_pred EEECCEEEEEEEcCCc-eEEEEECCC------cEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCcc-----
Confidence 9999999999875333 356777766 45 9999999999999999866667778777889999999999
Q ss_pred CCcCCCEEEecccC----------------------------------CCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCC
Q 008714 407 GNLVPHLYCIGDAN----------------------------------GKMMLAHAASAQGISVVEQVTGRD-HVLNHLS 451 (556)
Q Consensus 407 ~t~~~~Vya~GD~~----------------------------------~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~ 451 (556)
|+.|+|||+|||+ +.+++++.|.+||++||+||++.. ...+|..
T Consensus 302 -t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 380 (500)
T 1onf_A 302 -TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKL 380 (500)
T ss_dssp -CSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSS
T ss_pred -cCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCC
Confidence 7899999999998 567899999999999999999854 4567888
Q ss_pred ccEEEecccceeEecCCHHHHHHhhhhcC-ceEEEEEEeccccchhh----hcCCcceEEEEEEcCCCCCccceEEEeCC
Q 008714 452 IPAACFTHPEISMVGLTEPQAREKAEKEG-FEVSVAKTSFKANTKAL----AENEGEGLAKGVPRNFASSERTNQHSDRP 526 (556)
Q Consensus 452 ~p~~~~~~~~i~~vG~te~~a~~~~~~~~-~~~~~~~~~~~~~~~a~----~~~~~~g~~kli~~~~~~~~~~g~~~~g~ 526 (556)
+|+++|++|+++++|+||+||++++ | +++.+.+.+|..+.++. ..+.+++|+||++|+ .+++|||+|++|+
T Consensus 381 ~p~~~~~~~~~a~vGl~e~~a~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~-~~~~ilG~~~~g~ 456 (500)
T 1onf_A 381 IPTVIFSHPPIGTIGLSEEAAIQIY---GKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVG-KDELIKGLHIIGL 456 (500)
T ss_dssp CCEEECCSSCEEEEECCHHHHHHHT---CGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEET-TTTEEEEEEEEST
T ss_pred CCeEEEcCcceEEEeCCHHHHHhcC---CCccEEEEEEECchhhhhhccccccCCCceEEEEEEEC-CCCEEEEEEEECC
Confidence 9999999999999999999998753 3 57888888999999987 566788999999998 6799999999999
Q ss_pred CchHHHHHHHHh
Q 008714 527 SKPNLVKKLADV 538 (556)
Q Consensus 527 ~~~~~~~~l~~~ 538 (556)
.+.++|+.++..
T Consensus 457 ~a~~~i~~~~~a 468 (500)
T 1onf_A 457 NADEIVQGFAVA 468 (500)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999888654
No 22
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=100.00 E-value=4.5e-61 Score=515.93 Aligned_cols=428 Identities=25% Similarity=0.376 Sum_probs=358.2
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-C--------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhh
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-D--------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK 167 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~--------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~ 167 (556)
++..+|||+||||||||++||..|+++|++|+|||+ + .+||+|.+.||+|+|.++......+.+ .++.
T Consensus 28 ~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~---~~~~ 104 (519)
T 3qfa_A 28 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL---QDSR 104 (519)
T ss_dssp CSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH---HHHH
T ss_pred CcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHH---HHHH
Confidence 344569999999999999999999999999999998 3 799999999999999988877665554 3456
Q ss_pred hcCccccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCC
Q 008714 168 ALGLQVHA-AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSV 242 (556)
Q Consensus 168 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~ 242 (556)
.+|+.... ..+++..+..+.+.+.+.+...+...++..+|+++.+.+.+.+.+.+.+. ++ .++.||+||||||++
T Consensus 105 ~~g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~ 184 (519)
T 3qfa_A 105 NYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGER 184 (519)
T ss_dssp HTTBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEE
T ss_pred hcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCC
Confidence 77877544 47899999999998888888888888888999999999999888877663 23 379999999999999
Q ss_pred CCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhC
Q 008714 243 PFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 322 (556)
Q Consensus 243 p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 322 (556)
|+.|++++.. ..++++++++.+...|++++|||+|++|+|+|..|+++|.+||++++. .+++.+|+++.+.+.+.+++
T Consensus 185 p~~p~i~G~~-~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~ 262 (519)
T 3qfa_A 185 PRYLGIPGDK-EYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEE 262 (519)
T ss_dssp ECCCCCTTHH-HHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCCcc-CceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHH
Confidence 9988765532 246778888888889999999999999999999999999999999984 78999999999999999987
Q ss_pred CCceEEEcCceEEEEEecCCC--CeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc--CCCceeeCC
Q 008714 323 PRKIDYHTGVFATKITPAKDG--KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT--QRGFVPVDE 398 (556)
Q Consensus 323 ~~gV~~~~~~~v~~i~~~~~g--~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~--~~G~i~vd~ 398 (556)
.||++++++.+++++..+++ ..+.+++.+.+. ++..++++|.|++|+|++||++.++++..++.. ++|+|.||+
T Consensus 263 -~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g-~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~ 340 (519)
T 3qfa_A 263 -HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNS-EEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD 340 (519)
T ss_dssp -TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSS-SCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCT
T ss_pred -CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCC-cEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCC
Confidence 89999999988888754321 334454432211 111367899999999999999988788888877 479999999
Q ss_pred CCccccCCCCcCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhh
Q 008714 399 RMRVIDANGNLVPHLYCIGDAN-GKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKA 476 (556)
Q Consensus 399 ~l~~~~~~~t~~~~Vya~GD~~-~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~ 476 (556)
++| |+.|||||+|||+ +.+++++.|..||++||+||++.. ...++..+|+++|++|++++||+||+||++++
T Consensus 341 ~~~------Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~ 414 (519)
T 3qfa_A 341 EEQ------TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKF 414 (519)
T ss_dssp TSB------CSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHH
T ss_pred CCc------cCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhC
Confidence 999 7999999999998 778999999999999999999865 34688899999999999999999999999864
Q ss_pred hhcCceEEEEEEeccccchhhhcC-CcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 477 EKEGFEVSVAKTSFKANTKALAEN-EGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~a~~~~-~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+. ..+.+.+..|..+.++.... .++||+||++|+..+++|||+|++|+.+.++|+.++.+.
T Consensus 415 ~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai 476 (519)
T 3qfa_A 415 GE--ENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAAL 476 (519)
T ss_dssp CG--GGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHH
T ss_pred CC--CCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 22 35666777788777776544 468999999997457999999999999999998876543
No 23
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-61 Score=510.56 Aligned_cols=417 Identities=25% Similarity=0.412 Sum_probs=357.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc-----c
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-----H 174 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~-----~ 174 (556)
.++||+|||||++|+++|.+|++.|++|+|||++.+||+|.+.||+|++.+++.......++ ....+++.. .
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~---~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVS---HANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHT---TTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHH---hHHhcCccccccccc
Confidence 45899999999999999999999999999999988999999999999999987766555443 234455543 2
Q ss_pred -ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccce--EEEeCeEEEeCCCCCCCC-CC
Q 008714 175 -AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTDN--IVTAKDIIIATGSVPFVP-KG 248 (556)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~~--~~~~d~lViAtG~~p~~p-~~ 248 (556)
...+++..+..+.+.+...+...+...+++.+++++.+.+..++.+.+.+ .+++ ++.||+||+|||+.|..| ++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i 166 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENI 166 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTS
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCC
Confidence 34678888888888888888888888888899999999888777665554 4555 799999999999999888 66
Q ss_pred CCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEE
Q 008714 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 249 ~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~ 328 (556)
++.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.+++ .||++
T Consensus 167 ~g~~--~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~Gv~i 243 (479)
T 2hqm_A 167 PGFE--LGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVK-EGINV 243 (479)
T ss_dssp TTGG--GSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-HTCEE
T ss_pred CCcc--cccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHh-CCeEE
Confidence 6542 35677888888888999999999999999999999999999999999999999999999999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 407 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~ 407 (556)
++++.+++++.++++..+.+++.+| + +++++|.||+|+|++||+ .|.++..++.. ++|+|.||+++|
T Consensus 244 ~~~~~v~~i~~~~~~~~~~v~~~~G----~-~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~------ 311 (479)
T 2hqm_A 244 HKLSKIVKVEKNVETDKLKIHMNDS----K-SIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQN------ 311 (479)
T ss_dssp ECSCCEEEEEECC-CCCEEEEETTS----C-EEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCB------
T ss_pred EeCCEEEEEEEcCCCcEEEEEECCC----c-EEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCc------
Confidence 9999999998754443467777665 1 479999999999999999 55557778776 679999999999
Q ss_pred CcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC----ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcC-ce
Q 008714 408 NLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD----HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG-FE 482 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~----~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~-~~ 482 (556)
|+.|+|||+|||++.+++++.|..||+++|+||++.. ...+|..+|+++|++|+++++|+||+||++++ | .+
T Consensus 312 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~---~~~~ 388 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKY---GKEN 388 (479)
T ss_dssp CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHH---CGGG
T ss_pred cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcC---CCCc
Confidence 7999999999999989999999999999999999764 34677789999999999999999999998753 3 34
Q ss_pred EEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 483 VSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 483 ~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+++.+.+|..+.++...+++++|+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~kli~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 443 (479)
T 2hqm_A 389 IKVYNSKFTAMYYAMLSEKSPTRYKIVCAG-PNEKVVGLHIVGDSSAEILQGFGVA 443 (479)
T ss_dssp EEEEEEEECCGGGGGCSSCCCEEEEEEEET-TTTEEEEEEEESTTHHHHHHHHHHH
T ss_pred EEEEEEeccHHHHHhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 778889999999999888889999999998 6799999999999999999887644
No 24
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=5.1e-61 Score=508.35 Aligned_cols=412 Identities=30% Similarity=0.502 Sum_probs=361.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhh---cCccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA---LGLQVHAAG 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~---~g~~~~~~~ 177 (556)
++||+|||||+||++||.+|++.|++|+|||++.+||+|.+.+|+|+|.++.....++.+. .+.. +|++.....
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~---~~~~~~~~g~~~~~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQAS---RFTEPSPLGISVASPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHH---HTTSCCTTCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHh---hcccccccCcccCCCc
Confidence 5899999999999999999999999999999999999999999999999988777666553 2334 677665667
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEe
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~ 257 (556)
+++..+..+.+...+.+...+...+++.||+++.+.+.+.+.++|.+.+ .++.||+||||||++|+.|++.+.++ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~-~v~ 159 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGG-PVI 159 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBT-TEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccC-cEe
Confidence 8899999988888888888888888899999999999888888998876 78999999999999998877433443 578
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++...+...+++++|||+|++|+|+|..|++.|.+||++++.++++|.+++++.+.+.+.+++ .||++++++.++++
T Consensus 160 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~gv~i~~~~~v~~i 238 (458)
T 1lvl_A 160 SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKK-LGIALHLGHSVEGY 238 (458)
T ss_dssp CHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-HTCEEETTCEEEEE
T ss_pred cHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHH-CCCEEEECCEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
+. + . +.++..+| +..++++|.|++|+|++||++.+.++..++.. ++ +|.||+++| |+.|+|||+
T Consensus 239 ~~-~--~-v~v~~~~G----~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~------t~~~~Iya~ 303 (458)
T 1lvl_A 239 EN-G--C-LLANDGKG----GQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQ------TSMHNVWAI 303 (458)
T ss_dssp ET-T--E-EEEECSSS----CCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCB------CSSTTEEEC
T ss_pred Ee-C--C-EEEEECCC----ceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCc------CCCCCEEEe
Confidence 75 2 2 44442222 22579999999999999999876667778776 45 899999999 789999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchh
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKA 496 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a 496 (556)
|||++.+++++.|..||+++|+||+|++..+++..+|+++|++|+++++|++|+||++. |+++.+...+|..+.++
T Consensus 304 GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~----g~~~~~~~~~~~~~~~~ 379 (458)
T 1lvl_A 304 GDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQ----GLDCIVAQFPFAANGRA 379 (458)
T ss_dssp GGGGCSSCCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEEGGGCHHH
T ss_pred eccCCCcccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHHc----CCCEEEEEEECccchhh
Confidence 99999999999999999999999999777778889999999999999999999999874 89999999999999999
Q ss_pred hhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 497 LAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 497 ~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
...++++||+|+++|+ .+++|+|++++|+.+.++|+.++.+
T Consensus 380 ~~~~~~~g~~kl~~d~-~~~~ilG~~~vg~~a~e~i~~~~~a 420 (458)
T 1lvl_A 380 MSLESKSGFVRVVARR-DNHLILGWQAVGVAVSELSTAFAQS 420 (458)
T ss_dssp HHTTCCCCEEEEEEET-TTCBEEEEEEEETTGGGHHHHHHHH
T ss_pred hhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 8888889999999997 5799999999999999999887654
No 25
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-61 Score=510.76 Aligned_cols=407 Identities=24% Similarity=0.383 Sum_probs=353.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|||+|||||+||+++|..|++.|++|+|||| +.+||+|.+.+|+|++.++..+...+.+.... . ....+
T Consensus 3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~---~-----~~~~~ 74 (466)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIA---N-----VKIPL 74 (466)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH---C-----SCCCC
T ss_pred ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcc---c-----CCCCc
Confidence 358999999999999999999999999999996 89999999999999999998887766553321 1 23457
Q ss_pred CHHHHHHHHHHHHHHHH--HHHHHHHHHcCcEEEeceEEEecCCEEE--EccceE--EEeCeEEEeCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIR--NNLTNSMKALGVDILTGVGTILGPQKVK--FGTDNI--VTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~gv~~~~g~~~~~~~~~v~--~~~~~~--~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
++..+..+.+...+ +. ..+...+++.+++++.+.+...+...+. ..++++ +.||+||+|||+.|..|++++.+
T Consensus 75 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~ 153 (466)
T 3l8k_A 75 DFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE 153 (466)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG
T ss_pred CHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc
Confidence 88888888887777 76 7777778888999999988877766544 455667 99999999999999988877765
Q ss_pred CCeEecccccc----cCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCC-CHHHHHHHHHHHhCCCceE
Q 008714 253 GKTVITSDHAL----KLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGF-DPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 253 ~~~v~t~~~~~----~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~-d~~~~~~~~~~l~~~~gV~ 327 (556)
.+++++++. .+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+ ++++.+.+++.++ |+
T Consensus 154 --~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~----v~ 227 (466)
T 3l8k_A 154 --YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK----LN 227 (466)
T ss_dssp --GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC----CC
T ss_pred --ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE----EE
Confidence 477888877 667789999999999999999999999999999999999999998 9999999988873 99
Q ss_pred EEcCceEEEEEecCCCCeEEEEEe--cCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcccc
Q 008714 328 YHTGVFATKITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVID 404 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~ 404 (556)
+++++.+++++..++ ..+.+.+. +| +..++++|.|++|+|++||++ |.++..++.. ++| |.||+++|
T Consensus 228 i~~~~~v~~i~~~~~-~~v~v~~~~~~G----~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~--- 297 (466)
T 3l8k_A 228 IKFNSPVTEVKKIKD-DEYEVIYSTKDG----SKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMK--- 297 (466)
T ss_dssp EECSCCEEEEEEEET-TEEEEEECCTTS----CCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCB---
T ss_pred EEECCEEEEEEEcCC-CcEEEEEEecCC----ceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCcc---
Confidence 999999999987531 23567776 33 224799999999999999999 7678888876 678 99999999
Q ss_pred CCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC---CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCc
Q 008714 405 ANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR---DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF 481 (556)
Q Consensus 405 ~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~---~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~ 481 (556)
|+.|||||+|||++.+++++.|..||++||+||++. ....++..+|+++|++|++++||+||+||+++ |+
T Consensus 298 ---t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~----g~ 370 (466)
T 3l8k_A 298 ---TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKM----GI 370 (466)
T ss_dssp ---CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHH----TC
T ss_pred ---CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhC----CC
Confidence 799999999999999999999999999999999976 34568889999999999999999999999875 89
Q ss_pred eEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 482 EVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 482 ~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
++++.+.+|..+.+++..++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 427 (466)
T 3l8k_A 371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFER-GSMRLIGAWMIGVHSQYLINELGLAV 427 (466)
T ss_dssp CEEEEEEEGGGSHHHHHHTCCCCEEEEEEET-TTCBEEEEEEESTTHHHHHHHHHHHH
T ss_pred CEEEEEEEcccChhheecCCCeEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 68999999999999999988776543
No 26
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=100.00 E-value=1.8e-60 Score=507.99 Aligned_cols=424 Identities=25% Similarity=0.381 Sum_probs=357.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC---C-------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG---D-------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL 169 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk---~-------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~ 169 (556)
.+|||+|||||+||++||.+|+++|++|+|||| . .+||+|++.||+|++.++..+...+.+ .+...+
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~---~~~~~~ 84 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAV---HEAAAY 84 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHH---HHHHHT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHH---HHHHhc
Confidence 469999999999999999999999999999993 1 389999999999999998877766554 345567
Q ss_pred Cccccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc-eEEEeCeEEEeCCCCCCC
Q 008714 170 GLQVHA-AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD-NIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 170 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~-~~~~~d~lViAtG~~p~~ 245 (556)
|+.... ..+++..+..+.+...+.+...+...++..+|+++.+.+.+.+.+.+.+ .++ .++.||+||||||+.|..
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~ 164 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRY 164 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence 776544 4679999999988888888777777888899999999999888877666 334 479999999999999998
Q ss_pred CCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCc
Q 008714 246 PKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 246 p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~g 325 (556)
|++++.+ ...+++++++.+...|++++|||+|++|+|+|..|+++|.+||++++ +.+++.+|+++.+.+.+.+++ .|
T Consensus 165 p~i~G~~-~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~-~G 241 (483)
T 3dgh_A 165 PDIPGAV-EYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEE-RG 241 (483)
T ss_dssp CSSTTHH-HHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHH-TT
T ss_pred CCCCCcc-cccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHh-CC
Confidence 8766543 23467888888888999999999999999999999999999999998 568899999999999999987 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccC
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDA 405 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~ 405 (556)
|++++++.+.+++..+++ .+.+++.++.. ++..++++|.|++|+|++||++.++++..++..+.|+|.||+++|
T Consensus 242 v~i~~~~~v~~i~~~~~~-~~~v~~~~~~~-~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~~~---- 315 (483)
T 3dgh_A 242 IPFLRKTVPLSVEKQDDG-KLLVKYKNVET-GEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEA---- 315 (483)
T ss_dssp CCEEETEEEEEEEECTTS-CEEEEEEETTT-CCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTTCB----
T ss_pred CEEEeCCEEEEEEEcCCC-cEEEEEecCCC-CceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcCCc----
Confidence 999999999999875443 35677777521 223479999999999999999988888888887559999999999
Q ss_pred CCCcCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceE
Q 008714 406 NGNLVPHLYCIGDAN-GKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~-~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~ 483 (556)
|+.|||||+|||+ +.+++++.|..||+++|+||+|... ..++..+|+++|++|++++||+||+||+++++. ..+
T Consensus 316 --t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~--~~~ 391 (483)
T 3dgh_A 316 --TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGA--DEI 391 (483)
T ss_dssp --CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCG--GGE
T ss_pred --cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCC--CCE
Confidence 7999999999998 6789999999999999999998754 468889999999999999999999999986422 346
Q ss_pred EEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 484 SVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 484 ~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+.+..|..+.++... +.++||+||++|++.+++|||+|++|+.+.++|+.++..-
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai 448 (483)
T 3dgh_A 392 EVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAAL 448 (483)
T ss_dssp EEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHH
T ss_pred EEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 6667777776655433 4568999999998337999999999999999999886543
No 27
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=100.00 E-value=2.2e-60 Score=507.80 Aligned_cols=424 Identities=24% Similarity=0.333 Sum_probs=356.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC---------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG---------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG 170 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk---------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g 170 (556)
.+|||+|||||+||++||..|+++|++|+|||| ..+||+|++.||+|++.++......+.. .+...+|
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~---~~~~~~g 81 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMI---RDAHHYG 81 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH---HHHHHTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHH---HHHHhcC
Confidence 469999999999999999999999999999995 4689999999999999998877665554 3456677
Q ss_pred cccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCC
Q 008714 171 LQVH-AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~ 245 (556)
+... ...+++..+..+.+.+.+.+...+...++..+|+++.+.+.+.+.+.+.+. ++ .++.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 7655 356789999999988888888888888888999999999999988877663 33 579999999999999998
Q ss_pred CC-CCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCC
Q 008714 246 PK-GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR 324 (556)
Q Consensus 246 p~-~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~ 324 (556)
|+ +++.+ ...+++++++.+...|++++|||+|++|+|+|..|+++|.+||++++. .+++.+|+++.+.+.+.+++ .
T Consensus 162 p~~i~G~~-~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~-~ 238 (488)
T 3dgz_A 162 PTQVKGAL-EYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMES-H 238 (488)
T ss_dssp CSSCBTHH-HHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHH-T
T ss_pred CCCCCCcc-cccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHH-C
Confidence 87 66542 234678888888889999999999999999999999999999999986 58899999999999999987 8
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc--CCCceeeCCCCcc
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT--QRGFVPVDERMRV 402 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~--~~G~i~vd~~l~~ 402 (556)
||++++++.+.+++..+++ .+.+++.+... ++..++++|.|++|+|++||++.++++..++.. ++|+|.||+++|
T Consensus 239 gv~~~~~~~v~~i~~~~~~-~~~v~~~~~~~-g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~- 315 (488)
T 3dgz_A 239 GTQFLKGCVPSHIKKLPTN-QLQVTWEDHAS-GKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA- 315 (488)
T ss_dssp TCEEEETEEEEEEEECTTS-CEEEEEEETTT-TEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSB-
T ss_pred CCEEEeCCEEEEEEEcCCC-cEEEEEEeCCC-CeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCc-
Confidence 9999999999999875333 35566665311 112358999999999999999988778888876 479999999999
Q ss_pred ccCCCCcCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcC
Q 008714 403 IDANGNLVPHLYCIGDAN-GKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG 480 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~-~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~ 480 (556)
|++|||||+|||+ +.+++++.|..||+++|+||++... ..++..+|+++|++|++++||+||+||+++++.
T Consensus 316 -----t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~-- 388 (488)
T 3dgz_A 316 -----TSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQ-- 388 (488)
T ss_dssp -----CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCG--
T ss_pred -----cCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCC--
Confidence 7999999999997 6789999999999999999998654 467889999999999999999999999976421
Q ss_pred ceEEEEEEeccccchhhhcC-CcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 481 FEVSVAKTSFKANTKALAEN-EGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 481 ~~~~~~~~~~~~~~~a~~~~-~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
..+.+.+.+|..+.++.... .++||+||++|+..+++|||+|++|+.+.++|+.++..-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai 448 (488)
T 3dgz_A 389 EHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGI 448 (488)
T ss_dssp GGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHH
T ss_pred CcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 35666777787776665443 378999999993257999999999999999999886543
No 28
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=100.00 E-value=3.4e-60 Score=502.24 Aligned_cols=413 Identities=36% Similarity=0.581 Sum_probs=364.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
|||+|||||+||+++|.+|++.|++|+|||+ +.+||+|.+.+|+|+|.++.....++.+.. ..+|++.....+++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~----~~~g~~~~~~~~~~ 77 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK----GLLGAKVKGVELDL 77 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH----CCTTEEECCEEECH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh----hcCCcccCCCccCH
Confidence 7999999999999999999999999999999 589999999999999999887776665532 45666654556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc-cceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG-TDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~-~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
..+..+.+...+.+...+...+++.+++++.+.+.+.+.+.+.+. ++.++.||+||+|||++|..|++++.+...++++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~ 157 (455)
T 2yqu_A 78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTS 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEech
Confidence 888888887777777777788888899999999888888877775 4578999999999999999888777666568888
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++...+...+++++|||+|++|+|+|..|++.|.+|+++++.++++|.+++++.+.+.+.+++ .||++++++.+++++.
T Consensus 158 ~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~-~Gv~i~~~~~V~~i~~ 236 (455)
T 2yqu_A 158 TEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKK-QGLTIRTGVRVTAVVP 236 (455)
T ss_dssp HHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-HTCEEECSCCEEEEEE
T ss_pred HHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHH-CCCEEEECCEEEEEEE
Confidence 888888888999999999999999999999999999999999999999999999999999987 8999999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecc
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD 418 (556)
+++ .+.+++.++ .++++|.||+|+|++|+++.++++..++.. ++|+|.||+++| |+.|+|||+||
T Consensus 237 ~~~--~v~v~~~~g------~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~------t~~~~iya~GD 302 (455)
T 2yqu_A 237 EAK--GARVELEGG------EVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLR------TRVPHIYAIGD 302 (455)
T ss_dssp ETT--EEEEEETTS------CEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSB------CSSTTEEECGG
T ss_pred eCC--EEEEEECCC------eEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcc------cCCCCEEEEec
Confidence 532 356666555 689999999999999999876667777776 578999999999 78999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhhh
Q 008714 419 ANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALA 498 (556)
Q Consensus 419 ~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 498 (556)
|++.+++++.|..||+++|+||+++...+++..+|++.|++|+++++|++|++|++. |+++.+...++..+.++..
T Consensus 303 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~----g~~~~~~~~~~~~~~~~~~ 378 (455)
T 2yqu_A 303 VVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQ----GIPYKVGKFPYSASGRARA 378 (455)
T ss_dssp GSSSCCCHHHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEEEECCHHHHHHH----TCCEEEEEEEGGGCHHHHH
T ss_pred CCCCccCHHHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEEEECCHHHHHHc----CCCEEEEEEEcccchHHHh
Confidence 999999999999999999999998776677888999999999999999999999875 8999999999999999998
Q ss_pred cCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 499 ENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 499 ~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
.+++++|+|+++++ .+++|+|++++|+.+.++++.++.+
T Consensus 379 ~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~~~i~~~~~a 417 (455)
T 2yqu_A 379 MGETEGFIKVLAHA-KTDRILGVHGIGARVGDVLAEAALA 417 (455)
T ss_dssp HTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 88889999999997 5789999999999999988877543
No 29
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=100.00 E-value=7e-60 Score=501.46 Aligned_cols=413 Identities=26% Similarity=0.415 Sum_probs=351.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhc-Ccccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL-GLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 178 (556)
.++||+|||||++|+++|.+|++.|++|+|||++.+||+|.+.||+|++.++..+....... ....+ |++...+..
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~---~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRR---ESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHH---CCTTTTTSCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHh---hhhhcCCccCCCCcc
Confidence 45899999999999999999999999999999999999999999999999887665443322 12223 444444556
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHc-CcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRN-NLTNSMKAL-GVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
++..+..+.+...+.+.. .+.+.+++. +++++.+.+.+.+.+.+.+ .++ .++.||+||+|||++|+.|+.++.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~ 159 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK 159 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC
Confidence 777777766666555543 244566667 9999999888777666544 455 6799999999999999998877776
Q ss_pred CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCc
Q 008714 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 253 ~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
...+++++++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.++++| +++++.+.+.+.+++ .||++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~-~Gv~i~~~~ 237 (467)
T 1zk7_A 160 ESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRA-EGIEVLEHT 237 (467)
T ss_dssp TSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHH-TTCEEETTC
T ss_pred cCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHh-CCCEEEcCC
Confidence 666788888888888899999999999999999999999999999999999999 999999999999987 899999999
Q ss_pred eEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCC
Q 008714 333 FATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
.+++++.++ ..+.+.+. + .++++|.||+|+|++||++.+.++..++.. ++|+|.||+++| |+.|
T Consensus 238 ~v~~i~~~~--~~~~v~~~-~------~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~------t~~~ 302 (467)
T 1zk7_A 238 QASQVAHMD--GEFVLTTT-H------GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMR------TSNP 302 (467)
T ss_dssp CEEEEEEET--TEEEEEET-T------EEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCB------CSST
T ss_pred EEEEEEEeC--CEEEEEEC-C------cEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcc------cCCC
Confidence 999998742 33455553 2 479999999999999999877667778776 578999999999 7899
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecc
Q 008714 412 HLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFK 491 (556)
Q Consensus 412 ~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~ 491 (556)
+|||+|||++.+++++.|..||+++|.||++.+..+++..+|+++|++|+++++|++|++|+.. |+++.+.+.+|.
T Consensus 303 ~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~----g~~~~~~~~~~~ 378 (467)
T 1zk7_A 303 NIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHD----GIETDSRTLTLD 378 (467)
T ss_dssp TEEECSTTBSSCCCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEEEECCHHHHHHT----TCCEEEEEEEGG
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEEEecCHHHHHhc----CCCeEEEEEecc
Confidence 9999999999999999999999999999998766678888999999999999999999999864 899999999999
Q ss_pred ccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHH
Q 008714 492 ANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLAD 537 (556)
Q Consensus 492 ~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~ 537 (556)
.+.+++..+++.||+|+++++ .+++|||+|++|+.+.++|+.++.
T Consensus 379 ~~~~~~~~~~~~~~~kl~~~~-~~~~ilG~~~~g~~a~~~i~~~~~ 423 (467)
T 1zk7_A 379 NVPRALANFDTRGFIKLVIEE-GSHRLIGVQAVAPEAGELIQTAAL 423 (467)
T ss_dssp GCHHHHHTTCCCCEEEEEEET-TTCBEEEEEEEETTHHHHHHHHHH
T ss_pred cchhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHH
Confidence 999999888889999999998 579999999999999888765543
No 30
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=100.00 E-value=1e-59 Score=506.06 Aligned_cols=411 Identities=20% Similarity=0.285 Sum_probs=344.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCc-ccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL-QVHAA 176 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~-~~~~~ 176 (556)
+.++||+|||||++|+++|.+|++.|++|+|||++. +||+|.+.+|+|++.++.....++.++ +...+|+ +....
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~---~~~~~g~~~~~~~ 117 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR---TFSGQYWFPDMTE 117 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHH---HTTTSTTCCCCTT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHh---hhhhcCcHHHHHh
Confidence 346899999999999999999999999999999954 999999999999999987776655543 2333443 11000
Q ss_pred -ccCHHHHHHHHHHHHHHHHHHHH---HHH-----HHcCcEEE-eceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 177 -GYDRQGVADHANNLATKIRNNLT---NSM-----KALGVDIL-TGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~gv~~~-~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.+....+. ..+...+. ..+ ++.+++++ .+.+..++.+.|.+. +.++.||+||+|||+.|..|
T Consensus 118 ~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p 189 (523)
T 1mo9_A 118 KVVGIKEVV-------DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTL 189 (523)
T ss_dssp CCCCHHHHH-------HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCC
T ss_pred hhhhHHHHH-------HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCC
Confidence 01122222 22222222 344 66799999 888888888888886 57899999999999999998
Q ss_pred CCCCCCCCeEecccccc-cCCCCC-CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCC
Q 008714 247 KGIEVDGKTVITSDHAL-KLEFVP-DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR 324 (556)
Q Consensus 247 ~~~~~~~~~v~t~~~~~-~~~~~~-~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~ 324 (556)
+.++.+...+++++++. .+...+ ++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++ .
T Consensus 190 ~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~-~ 268 (523)
T 1mo9_A 190 DVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE-Q 268 (523)
T ss_dssp CSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH-T
T ss_pred CCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHh-C
Confidence 87776655588888888 777778 99999999999999999999999999999999999999999999999999987 8
Q ss_pred ceEEEcCceEEEEEecCCCCe--EEEEEecCCCCCCCc-eEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCC
Q 008714 325 KIDYHTGVFATKITPAKDGKP--VTIELIDAKTKEPKD-TLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERM 400 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~--~~v~~~~g~~~~~~~-~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l 400 (556)
||++++++.+++++.+++++. +.+++.+| + ++++|.||+|+|++||++. .++..++.. ++|+|.||+++
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G------~~~i~aD~Vv~A~G~~p~~~~-~l~~~gl~~~~~G~i~Vd~~~ 341 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNG------EMRIETDFVFLGLGEQPRSAE-LAKILGLDLGPKGEVLVNEYL 341 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTE------EEEEECSCEEECCCCEECCHH-HHHHHTCCBCTTSCBCCCTTS
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCC------cEEEEcCEEEECcCCccCCcc-CHHHcCCccCCCCCEEECCCC
Confidence 999999999999987544432 45677665 4 7999999999999999873 235667766 68999999999
Q ss_pred ccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcC
Q 008714 401 RVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG 480 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~ 480 (556)
| |+.|+|||+|||++.+++++.|..||++||+||+|.+.++++..+|+++|++|++++||+||+||++. |
T Consensus 342 ~------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~----g 411 (523)
T 1mo9_A 342 Q------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAA----G 411 (523)
T ss_dssp B------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHT----T
T ss_pred c------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhC----C
Confidence 9 78999999999999999999999999999999999877777888999999999999999999999875 8
Q ss_pred ceEEEEEEeccc--------------cchhhhc--CCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 481 FEVSVAKTSFKA--------------NTKALAE--NEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 481 ~~~~~~~~~~~~--------------~~~a~~~--~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+++.+.+++|.. +.++.+. ++++||+|+++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 485 (523)
T 1mo9_A 412 HEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDA-KTRKVLGAHHVGYGAKDAFQYLNVLI 485 (523)
T ss_dssp CCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEET-TTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 999999999988 8899888 7889999999998 67999999999999999988776543
No 31
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=100.00 E-value=2.2e-55 Score=480.71 Aligned_cols=421 Identities=24% Similarity=0.376 Sum_probs=344.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC--C-------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--D-------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG 170 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk--~-------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g 170 (556)
..+||+||||||||++||..|+++|++|+|||+ + .+||+|.+.+|+|++.+...+...+.+. ....+|
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~---~~~~~g 182 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALE---DAEHFG 182 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHH---HHHHTT
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHh---hHHhCC
Confidence 458999999999999999999999999999997 2 3899999999999999887665444442 344566
Q ss_pred ccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCC
Q 008714 171 LQVHA--AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPF 244 (556)
Q Consensus 171 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~ 244 (556)
+.... ...++..+..+++..+..+...+...+...+|+++.+.+.+.+.+.+.+. +| .++.||+||||||++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~ 262 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPK 262 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEEC
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCC
Confidence 65322 35688888888888887777666667778899999999888888877663 34 46999999999999999
Q ss_pred CCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCC
Q 008714 245 VPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR 324 (556)
Q Consensus 245 ~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~ 324 (556)
.|++++.+. ..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++. .+++.+|+++.+.+.+.+++ .
T Consensus 263 ~p~i~G~~~-~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~-~ 339 (598)
T 2x8g_A 263 YPEIPGAVE-YGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMEN-H 339 (598)
T ss_dssp CCSSTTHHH-HCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHH-T
T ss_pred CCCCCCccc-ceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHh-C
Confidence 887655322 24566777777778999999999999999999999999999999998 78899999999999999987 8
Q ss_pred ceEEEcCceEEEEEec-----CC--CCeEEEE--EecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCce
Q 008714 325 KIDYHTGVFATKITPA-----KD--GKPVTIE--LIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFV 394 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~-----~~--g~~~~v~--~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i 394 (556)
||++++++.+.+++.. ++ ...+.+. +.+| +..++++|.|++|+|++||++.+.++..++.. ++|+|
T Consensus 340 gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g----~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i 415 (598)
T 2x8g_A 340 GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG----KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRV 415 (598)
T ss_dssp TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTS----CEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCB
T ss_pred CCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCC----cEEeccCCEEEEEeCCccccCccCchhcCceECCCCcE
Confidence 9999999988888642 12 1223343 3444 12234599999999999999877667777776 67999
Q ss_pred eeCCCCccccCCCCcCCCEEEeccc-CCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHH
Q 008714 395 PVDERMRVIDANGNLVPHLYCIGDA-NGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQA 472 (556)
Q Consensus 395 ~vd~~l~~~~~~~t~~~~Vya~GD~-~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a 472 (556)
.||+++| |+.|||||+||| .+.+.+++.|..||++||+||++.. ...+|..+|+++|++|++++||+||+||
T Consensus 416 ~vd~~~~------ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a 489 (598)
T 2x8g_A 416 VCTDDEQ------TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDA 489 (598)
T ss_dssp CCCTTSB------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHH
T ss_pred EeCCCCc------CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHH
Confidence 9999999 799999999999 5668899999999999999999654 4467889999999999999999999999
Q ss_pred HHhhhhcC-ceEEEEEEeccccchhhhcCC-cceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 473 REKAEKEG-FEVSVAKTSFKANTKALAENE-GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 473 ~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~-~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
++.+ + .++.+.+.+|..+.++...++ ++||+||++++..+++|||+|++|+.+.++|+.++.+.
T Consensus 490 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai 555 (598)
T 2x8g_A 490 IEKY---GDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAI 555 (598)
T ss_dssp HHHH---CGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHH
T ss_pred HhhC---CCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 8753 3 347777888998888887654 67999999995346999999999999999998876543
No 32
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=100.00 E-value=1.2e-52 Score=440.94 Aligned_cols=364 Identities=18% Similarity=0.228 Sum_probs=278.9
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CeEEEecCC-cCC-ccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc-ccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEGD-VVG-GTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH-AAG 177 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~-~~G-G~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 177 (556)
+||||||||||++||.+|+++| .+|+|||++ .++ ++| |+|... .. ...... ...
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~----~l~~~~----~~-------------~~~~~~~~~~ 60 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC----ALPYVI----GE-------------VVEDRRYALA 60 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG----GHHHHH----TT-------------SSCCGGGTBC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc----hhHHHH----cC-------------Cccchhhhhh
Confidence 6999999999999999999987 579999993 322 222 232100 00 000000 000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--cCCEEEEc-----cceEEEeCeEEEeCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKVKFG-----TDNIVTAKDIIIATGSVPFVPKGI 249 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~~~~v~~~-----~~~~~~~d~lViAtG~~p~~p~~~ 249 (556)
+.. ...+++.+++++.+.. ..+ ..+.+.+. ++.++.||+||||||++|+.|+.+
T Consensus 61 ~~~------------------~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~ 122 (437)
T 4eqs_A 61 YTP------------------EKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFE 122 (437)
T ss_dssp CCH------------------HHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCC
T ss_pred cCH------------------HHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccccc
Confidence 111 1123456899988753 333 34455442 245789999999999999888654
Q ss_pred CCCCCeEec---ccccccC-----CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHh
Q 008714 250 EVDGKTVIT---SDHALKL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLI 321 (556)
Q Consensus 250 ~~~~~~v~t---~~~~~~~-----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 321 (556)
+ ..+++ .+++..+ ...+++++|||+|++|+|+|..++++|.+||++++.+++++.+|+++.+.+.+.++
T Consensus 123 g---~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~ 199 (437)
T 4eqs_A 123 S---DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELD 199 (437)
T ss_dssp C---TTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHH
T ss_pred C---ceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhh
Confidence 3 33332 3333322 23489999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCC
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERM 400 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l 400 (556)
+ .||++++++.+++++.. .+.+.++ +++++|.|++|+|++||++++ +..++.. ++|+|.||+++
T Consensus 200 ~-~gV~i~~~~~v~~~~~~------~v~~~~g------~~~~~D~vl~a~G~~Pn~~~~--~~~gl~~~~~G~I~vd~~~ 264 (437)
T 4eqs_A 200 K-REIPYRLNEEINAINGN------EITFKSG------KVEHYDMIIEGVGTHPNSKFI--ESSNIKLDRKGFIPVNDKF 264 (437)
T ss_dssp H-TTCCEEESCCEEEEETT------EEEETTS------CEEECSEEEECCCEEESCGGG--TTSSCCCCTTSCEECCTTC
T ss_pred c-cceEEEeccEEEEecCC------eeeecCC------eEEeeeeEEEEeceecCcHHH--HhhhhhhccCCcEecCCCc
Confidence 7 99999999999988643 3677776 689999999999999999865 5667766 78999999999
Q ss_pred ccccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCcc--CCCCCccEEEecccceeEecCC
Q 008714 401 RVIDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHV--LNHLSIPAACFTHPEISMVGLT 468 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~--~~~~~~p~~~~~~~~i~~vG~t 468 (556)
| |++|||||+|||++. +++++.|.+||+++|+||+|.+.. .++..+|.++|++|++++||+|
T Consensus 265 ~------Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlt 338 (437)
T 4eqs_A 265 E------TNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVK 338 (437)
T ss_dssp B------CSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESC
T ss_pred c------CCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCC
Confidence 9 799999999999743 457999999999999999987642 3567789999999999999999
Q ss_pred HHHHHHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHH
Q 008714 469 EPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLAD 537 (556)
Q Consensus 469 e~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~ 537 (556)
|+||++ .+++ +.++++....+. +.++++||+||++|+ .+++|||+|++|+. +.++|+.++.
T Consensus 339 e~~a~~----~~~~--~~~~~~~~~~~~-~~~~~~g~~Kli~d~-~~~~ilGa~~~g~~~a~e~i~~~~~ 400 (437)
T 4eqs_A 339 PNELKQ----FDYK--MVEVTQGAHANY-YPGNSPLHLRVYYDT-SNRQILRAAAVGKEGADKRIDVLSM 400 (437)
T ss_dssp GGGGGG----SCEE--EEEEEEESSCTT-SSSCCEEEEEEEEET-TTCBEEEEEEEESSSHHHHHHHHHH
T ss_pred HHHHHh----CCce--EEEEecCCchhh-cCCCCcEEEEEEEEC-CCCEEEEEEEECcCCHHHHHHHHHH
Confidence 999975 3544 455555555544 446788999999998 68999999999986 7888876643
No 33
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=4e-51 Score=432.20 Aligned_cols=372 Identities=19% Similarity=0.241 Sum_probs=288.1
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+||+|||||+||++||.+|+++ |.+|+|||+ +.+| |.|+.............
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g-------~~~~~~~~~~~~~~~~~------------------ 57 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG-------YLSGGLSAYFNHTINEL------------------ 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS-------SCCC-------------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc-------ccCccchhhhcCCCCCH------------------
Confidence 5999999999999999999999 899999999 4433 33332221111100000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--cCCEEEE---ccceEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKVKF---GTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~~~~v~~---~~~~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
+.+.....+.+.+.+++++.+.. ..+ +.+.+.+ .++.++.||+||+|||++|..|+.++.+
T Consensus 58 -------------~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~ 124 (452)
T 3oc4_A 58 -------------HEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQ 124 (452)
T ss_dssp ----------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTT
T ss_pred -------------HHhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCC
Confidence 00101112334557999876643 333 3456655 2456899999999999999999888777
Q ss_pred CCeEeccccccc------CCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCc
Q 008714 253 GKTVITSDHALK------LEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 253 ~~~v~t~~~~~~------~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~g 325 (556)
...+++...... +...+++++|||+|++|+|+|..|.++|.+||++++.+++++. +|+++.+.+.+.+++ .|
T Consensus 125 ~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~-~G 203 (452)
T 3oc4_A 125 TEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEK-QA 203 (452)
T ss_dssp CTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHT-TT
T ss_pred CCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHH-cC
Confidence 666776544332 2346899999999999999999999999999999999999997 999999999999987 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcccc
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVID 404 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~ 404 (556)
|++++++.+++++.. ++. +.+.+.+ .++++|.|++|+|++||++++. .. +.. ++|+|.||+++|
T Consensus 204 V~i~~~~~v~~i~~~-~~~-v~v~~~~-------g~i~aD~Vv~A~G~~p~~~~l~--~~-~~~~~~g~i~vd~~~~--- 268 (452)
T 3oc4_A 204 VIFHFEETVLGIEET-ANG-IVLETSE-------QEISCDSGIFALNLHPQLAYLD--KK-IQRNLDQTIAVDAYLQ--- 268 (452)
T ss_dssp EEEEETCCEEEEEEC-SSC-EEEEESS-------CEEEESEEEECSCCBCCCSSCC--TT-SCBCTTSCBCCCTTCB---
T ss_pred CEEEeCCEEEEEEcc-CCe-EEEEECC-------CEEEeCEEEECcCCCCChHHHH--hh-hccCCCCCEEECcCcc---
Confidence 999999999999864 333 3566533 2799999999999999998763 22 444 689999999999
Q ss_pred CCCCcCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCccC--CCCCccEEEecccceeEecCCHHHH
Q 008714 405 ANGNLVPHLYCIGDANGKM----------MLAHAASAQGISVVEQVTGRDHVL--NHLSIPAACFTHPEISMVGLTEPQA 472 (556)
Q Consensus 405 ~~~t~~~~Vya~GD~~~~~----------~~~~~A~~qg~~aa~~i~g~~~~~--~~~~~p~~~~~~~~i~~vG~te~~a 472 (556)
|+.|||||+|||++.+ ++++.|..||++||+||+|....+ .+..+|+++|+ |++++||+||+||
T Consensus 269 ---t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a 344 (452)
T 3oc4_A 269 ---TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEG 344 (452)
T ss_dssp ---CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGG
T ss_pred ---CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHH
Confidence 7899999999998753 699999999999999999876544 46678888885 7999999999999
Q ss_pred HHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCC-CchHHHHHHHHhh
Q 008714 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRP-SKPNLVKKLADVY 539 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~-~~~~~~~~l~~~~ 539 (556)
++ +|+++.+.++++.. ++ +.++++||+||++|+ .+++|||+|++|+ .+.++|+.++.+-
T Consensus 345 ~~----~g~~~~~~~~~~~~--~~-~~~~~~~~~kli~~~-~~~~ilG~~~~g~~~a~e~i~~~~~ai 404 (452)
T 3oc4_A 345 LF----FPQTLASIIVRQPA--PP-LQHGTEILGKLIYDK-VTQRVLGAQLCSKNNCLEKINTLALSI 404 (452)
T ss_dssp GG----SSSCEEEEEEEEEC--TT-TTCSCEEEEEEEEET-TTCBEEEEEEEESSCCTHHHHHHHHHH
T ss_pred HH----CCCceEEEEEecCC--cc-CCCCCeEEEEEEEEC-CCCEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 76 48999888877654 44 456778999999998 6899999999999 7999988775543
No 34
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.5e-50 Score=421.77 Aligned_cols=373 Identities=23% Similarity=0.319 Sum_probs=287.6
Q ss_pred CccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
++||+|||||+||+++|..|++. +.+|+|||+ +.+++... .+|... . + .
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~---~~p~~~-----------------~--~------~ 54 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC---GIPYVV-----------------E--G------L 54 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc---CCcccc-----------------C--C------C
Confidence 37999999999999999999998 889999999 44332110 111100 0 0 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-HHHcCcEEEec-eEEEecC--CEEEEccc-eEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNS-MKALGVDILTG-VGTILGP--QKVKFGTD-NIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~~~~g-~~~~~~~--~~v~~~~~-~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
.+. +.+..+..+. .++.+++++.+ .+..++. +.|.+.++ .++.||+||+|||+.|+.|+.++.+
T Consensus 55 ~~~-----------~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~ 123 (449)
T 3kd9_A 55 STP-----------DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVN 123 (449)
T ss_dssp ----------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTT
T ss_pred CCH-----------HHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCC
Confidence 000 1111111122 25679999998 5555554 45555555 4799999999999999988877766
Q ss_pred CCeEecc---cccccCC-----CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCC
Q 008714 253 GKTVITS---DHALKLE-----FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINP 323 (556)
Q Consensus 253 ~~~v~t~---~~~~~~~-----~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~ 323 (556)
...+++. +++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~- 202 (449)
T 3kd9_A 124 LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK- 202 (449)
T ss_dssp STTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTT-
T ss_pred CCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh-
Confidence 5556543 3332221 25689999999999999999999999999999999999998 999999999999987
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcc
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRV 402 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~ 402 (556)
. |++++++.+.+++.++ . +...+.++ .++++|.|++|+|++||++++ +..++.. ++|+|.||+++|
T Consensus 203 ~-v~i~~~~~v~~i~~~~--~-v~~v~~~g------~~i~~D~Vv~a~G~~p~~~l~--~~~gl~~~~~G~i~vd~~~~- 269 (449)
T 3kd9_A 203 H-VNLRLQEITMKIEGEE--R-VEKVVTDA------GEYKAELVILATGIKPNIELA--KQLGVRIGETGAIWTNEKMQ- 269 (449)
T ss_dssp T-SEEEESCCEEEEECSS--S-CCEEEETT------EEEECSEEEECSCEEECCHHH--HHTTCCBCTTSSBCCCTTCB-
T ss_pred C-cEEEeCCeEEEEeccC--c-EEEEEeCC------CEEECCEEEEeeCCccCHHHH--HhCCccCCCCCCEEECCCCc-
Confidence 6 9999999999998643 2 22234454 689999999999999998754 5666666 688999999999
Q ss_pred ccCCCCcCCCEEEecccCC-------C---CCcHHHHHHHHHHHHHHHhCCCccCC-CCCccEEEecccceeEecCCHHH
Q 008714 403 IDANGNLVPHLYCIGDANG-------K---MMLAHAASAQGISVVEQVTGRDHVLN-HLSIPAACFTHPEISMVGLTEPQ 471 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~-------~---~~~~~~A~~qg~~aa~~i~g~~~~~~-~~~~p~~~~~~~~i~~vG~te~~ 471 (556)
|+.|||||+|||+. . +++++.|..||+++|+||+|++..++ +..+|++.|++|++++||+||+|
T Consensus 270 -----t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~ 344 (449)
T 3kd9_A 270 -----TSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEME 344 (449)
T ss_dssp -----CSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHH
T ss_pred -----cCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHH
Confidence 79999999999973 2 57999999999999999999876553 45678999999999999999999
Q ss_pred HHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 472 AREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 472 a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
|+++ |+++.+.++ ..+.++... ++++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 345 a~~~----g~~~~~~~~--~~~~~~~~~~~~~~~~~kli~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 405 (449)
T 3kd9_A 345 ALKE----GYDVRTAFI--KASTRPHYYPGGREIWLKGVVDN-ETNRLLGVQVVGSDILPRIDTAAAM 405 (449)
T ss_dssp HHHT----TCCEEEEEE--EEESSCTTSTTCCEEEEEEEEET-TTCBEEEEEEEESSCHHHHHHHHHH
T ss_pred HHHC----CCceEEEEE--ecCCccccCCCCceEEEEEEEEC-CCCEEEEEEEEChHHHHHHHHHHHH
Confidence 9874 888887664 456677655 6778999999998 6899999999999999999876544
No 35
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=100.00 E-value=3.9e-49 Score=417.08 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=288.8
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+||+|||||++|+++|..|++. |.+|+|||++ .++. .+........... . .+
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-------~~~~~~~~~~g~~---------~---------~~ 55 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF-------LSCGIALYLGKEI---------K---------NN 55 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB-------CGGGHHHHHTTCB---------G---------GG
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc-------ccccchhhhcCCc---------c---------cC
Confidence 4899999999999999999998 9999999994 3332 1211110000000 0 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--cCCEEEEcc-----ceEEEeCeEEEeCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKVKFGT-----DNIVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~~~~v~~~~-----~~~~~~d~lViAtG~~p~~p~~~~ 250 (556)
++..+ ...+.+.+++.|++++.+.. ..+ +.+.+.+.+ +.++.||+||+|||++|..|+.++
T Consensus 56 ~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g 124 (452)
T 2cdu_A 56 DPRGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPG 124 (452)
T ss_dssp CGGGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTT
T ss_pred CHHHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCC
Confidence 11100 00112234457999987763 433 356777643 567999999999999999887766
Q ss_pred CCCCeEeccc------ccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-CCCHHHHHHHHHHHhCC
Q 008714 251 VDGKTVITSD------HALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-GFDPEIGKLAQRVLINP 323 (556)
Q Consensus 251 ~~~~~v~t~~------~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-~~d~~~~~~~~~~l~~~ 323 (556)
.+...+++.. .+......+++++|||+|++|+|+|..|.+.|.+||++++.+++++ .+++++.+.+.+.+++
T Consensus 125 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~- 203 (452)
T 2cdu_A 125 IDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEA- 203 (452)
T ss_dssp TTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHH-
T ss_pred CCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHH-
Confidence 6544455432 2333345689999999999999999999999999999999999999 6999999999999987
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcc
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRV 402 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~ 402 (556)
.||++++++.+++++.. +++...+.+ +| +++++|.||+|+|++||++++ +.. +.. ++|+|.||+++|
T Consensus 204 ~Gv~i~~~~~v~~i~~~-~~~v~~v~~-~g------~~i~~D~vv~a~G~~p~~~ll--~~~-l~~~~~G~i~Vd~~~~- 271 (452)
T 2cdu_A 204 HGVNLVLGSKVAAFEEV-DDEIITKTL-DG------KEIKSDIAILCIGFRPNTELL--KGK-VAMLDNGAIITDEYMH- 271 (452)
T ss_dssp TTCEEEESSCEEEEEEE-TTEEEEEET-TS------CEEEESEEEECCCEEECCGGG--TTT-SCBCTTSCBCCCTTSB-
T ss_pred CCCEEEcCCeeEEEEcC-CCeEEEEEe-CC------CEEECCEEEECcCCCCCHHHH--HHh-hhcCCCCCEEECCCcC-
Confidence 89999999999999863 333222332 44 589999999999999999865 444 554 689999999999
Q ss_pred ccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCccC-CCCCccEEEecccceeEecCCHHH
Q 008714 403 IDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFTHPEISMVGLTEPQ 471 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~~-~~~~~p~~~~~~~~i~~vG~te~~ 471 (556)
|+.|||||+|||++. +++++.|..||++||+||++.+..+ ++...|+..|++|+++++|++|++
T Consensus 272 -----t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 346 (452)
T 2cdu_A 272 -----SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTAL 346 (452)
T ss_dssp -----CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHH
T ss_pred -----cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHH
Confidence 789999999999873 4789999999999999999876432 345677788889999999999999
Q ss_pred HHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCC-CchHHHHHHHHhh
Q 008714 472 AREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRP-SKPNLVKKLADVY 539 (556)
Q Consensus 472 a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~-~~~~~~~~l~~~~ 539 (556)
|++. |+++.+. .|..+.++..+ +.+++|+|+++++ .+++|+|+|++|+ .+.++|+.++.+.
T Consensus 347 a~~~----g~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~~~~~~i~~~~~ai 409 (452)
T 2cdu_A 347 AKAN----NLKVSEV--IIADNYRPEFMLSTDEVLMSLVYDP-KTRVILGGALSSMHDVSQSANVLSVCI 409 (452)
T ss_dssp HHHT----TCCCEEE--EEEEESSCTTBSCCCEEEEEEEECT-TTCBEEEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHc----CCceEEE--EEecCCccccCCCCceEEEEEEEEC-CCCEEEEEEEEcCccHHHHHHHHHHHH
Confidence 9874 7877766 37778888766 5678999999998 5799999999999 8999988776544
No 36
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=100.00 E-value=6.3e-49 Score=417.76 Aligned_cols=381 Identities=21% Similarity=0.257 Sum_probs=271.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
+||+|||||++|++||..|++. |.+|+|||+ +.++. ..| +|.. ....+
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~----~~~gl~~~----~~g~~-------------------- 55 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY----GGCGIPYY----VSGEV-------------------- 55 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccc----cccccchh----hcCCC--------------------
Confidence 6999999999999999999999 999999999 44321 011 1110 00000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEcc---ce--EEEeCeEEEeCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGT---DN--IVTAKDIIIATGSVPFVPKGI 249 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~~---~~--~~~~d~lViAtG~~p~~p~~~ 249 (556)
.+...+..+ ...+..+.....+..+++++.+..+ .+ +.+.+.+.+ +. ++.||+||+|||+.|..|+.+
T Consensus 56 ~~~~~~~~~----~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~ 131 (472)
T 3iwa_A 56 SNIESLQAT----PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVE 131 (472)
T ss_dssp -----------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCT
T ss_pred CchHHhccc----cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCC
Confidence 000000000 0001112222233468888766433 33 355666543 44 799999999999999988776
Q ss_pred CCCCCeEecc---cccccCC-----CCCCeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeCCCCCC-CCCHHHHHHHHHH
Q 008714 250 EVDGKTVITS---DHALKLE-----FVPDWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQLMP-GFDPEIGKLAQRV 319 (556)
Q Consensus 250 ~~~~~~v~t~---~~~~~~~-----~~~~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~~~ll~-~~d~~~~~~~~~~ 319 (556)
+.+...+++. ++...+. ..+++++|||+|++|+|+|..|.+. |.+|+++++.+++++ .+++++.+.+.+.
T Consensus 132 G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 211 (472)
T 3iwa_A 132 GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHD 211 (472)
T ss_dssp TTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHH
Confidence 6654444433 3333332 4589999999999999999999999 999999999999999 7999999999999
Q ss_pred HhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCC
Q 008714 320 LINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDE 398 (556)
Q Consensus 320 l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~ 398 (556)
+++ .||++++++.+++++.+ ++ .+.+.+.+| +++++|.||+|+|++||++++ +..++.. ++|+|.||+
T Consensus 212 l~~-~GV~i~~~~~v~~i~~~-~~-~v~v~~~~g------~~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~~~g~i~vd~ 280 (472)
T 3iwa_A 212 LEK-NDVVVHTGEKVVRLEGE-NG-KVARVITDK------RTLDADLVILAAGVSPNTQLA--RDAGLELDPRGAIIVDT 280 (472)
T ss_dssp HHH-TTCEEECSCCEEEEEES-SS-BEEEEEESS------CEEECSEEEECSCEEECCHHH--HHHTCCBCTTCCEECCT
T ss_pred HHh-cCCEEEeCCEEEEEEcc-CC-eEEEEEeCC------CEEEcCEEEECCCCCcCHHHH--HhCCccCCCCCCEEECC
Confidence 987 89999999999999874 23 355777776 589999999999999998743 4566665 689999999
Q ss_pred CCccccCCCCcCCCEEEecccC-------CC---CCcHHHHHHHHHHHHHHHhCCCccCC-CCCccEEEecccceeEecC
Q 008714 399 RMRVIDANGNLVPHLYCIGDAN-------GK---MMLAHAASAQGISVVEQVTGRDHVLN-HLSIPAACFTHPEISMVGL 467 (556)
Q Consensus 399 ~l~~~~~~~t~~~~Vya~GD~~-------~~---~~~~~~A~~qg~~aa~~i~g~~~~~~-~~~~p~~~~~~~~i~~vG~ 467 (556)
++| |+.|||||+|||+ +. +++++.|..||++||+||+|++..+. ....+++.|++|++++||+
T Consensus 281 ~~~------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~ 354 (472)
T 3iwa_A 281 RMR------TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGL 354 (472)
T ss_dssp TCB------CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEEC
T ss_pred Ccc------cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEEC
Confidence 999 7899999999997 43 46899999999999999998875542 2234456688999999999
Q ss_pred CHHHHHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCC---CchHHHHHHHHh
Q 008714 468 TEPQAREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRP---SKPNLVKKLADV 538 (556)
Q Consensus 468 te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~---~~~~~~~~l~~~ 538 (556)
||+||+++ |+++.+.. +..+.++.++ ++++||+||++|+ .+++|||+|++|+ .+.++|+.++.+
T Consensus 355 ~e~~a~~~----g~~~~~~~--~~~~~~~~~~~~~~~~~~kli~~~-~~~~ilG~~~~g~~~~~~~~~i~~~~~a 422 (472)
T 3iwa_A 355 TVEGALRE----GYDAVNVH--VEQFDRAHFYPEKTIMTLQLVVDR-PTRRVLGIQGFSTLGDALTARINAVATM 422 (472)
T ss_dssp CHHHHHHT----TCCEEEEE--EEC-----------CEEEEEEEET-TTCBEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHc----CCceEEEE--EecCCccCccCCCceEEEEEEEEC-CCCEEEEEEEECCCcccHHHHHHHHHHH
Confidence 99999874 88888765 4567788776 7889999999998 6899999999999 447888766443
No 37
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=100.00 E-value=2e-48 Score=415.36 Aligned_cols=375 Identities=19% Similarity=0.256 Sum_probs=286.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcC---CeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG---LKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g---~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
++||+|||||+||+++|..|++.| .+|+|||++ .++.. +| ........ . +
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~----~~---~~~~~~~~-------------~-~----- 88 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFL----GA---GMALWIGE-------------Q-I----- 88 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBC----GG---GHHHHHTT-------------S-S-----
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCcc----cc---ccchhhcC-------------c-c-----
Confidence 489999999999999999999998 999999994 34321 11 00000000 0 0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--cCCEEEEc-c--ceEEEeCeEEEeCCCCCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFG-T--DNIVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~v~~~-~--~~~~~~d~lViAtG~~p~~p~~~~ 250 (556)
.++..+ .....+.+++.|++++.+. +..+ +.+.|.+. + +.++.||+||||||++|..|+.++
T Consensus 89 -~~~~~~-----------~~~~~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~~p~i~G 156 (490)
T 2bc0_A 89 -AGPEGL-----------FYSDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156 (490)
T ss_dssp -SCSGGG-----------BSCCHHHHHHTTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEECCCSCBT
T ss_pred -CCHHHh-----------hhcCHHHHHhCCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcCCCCCCC
Confidence 000000 0001123345799997776 4444 35677765 4 457999999999999999887666
Q ss_pred CC-----------CCeEeccc------ccccCC--CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-CCCH
Q 008714 251 VD-----------GKTVITSD------HALKLE--FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-GFDP 310 (556)
Q Consensus 251 ~~-----------~~~v~t~~------~~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-~~d~ 310 (556)
.+ ...++++. .+.+.. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+++
T Consensus 157 ~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~ 236 (490)
T 2bc0_A 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDR 236 (490)
T ss_dssp CCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCH
T ss_pred ccccccccccccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHH
Confidence 55 34455432 222223 5689999999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT- 389 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~- 389 (556)
++.+.+.+.+++ .||++++++.+++++. +++...+.+ ++ +++++|.||+|+|++||++++ +.. +..
T Consensus 237 ~~~~~l~~~l~~-~GV~i~~~~~v~~i~~--~~~v~~v~~-~g------~~i~~D~Vi~a~G~~p~~~ll--~~~-l~~~ 303 (490)
T 2bc0_A 237 DLTDLMAKNMEE-HGIQLAFGETVKEVAG--NGKVEKIIT-DK------NEYDVDMVILAVGFRPNTTLG--NGK-IDLF 303 (490)
T ss_dssp HHHHHHHHHHHT-TTCEEEETCCEEEEEC--SSSCCEEEE-SS------CEEECSEEEECCCEEECCGGG--TTC-SCBC
T ss_pred HHHHHHHHHHHh-CCeEEEeCCEEEEEEc--CCcEEEEEE-CC------cEEECCEEEECCCCCcChHHH--Hhh-hccC
Confidence 999999999987 8999999999999986 333333444 44 589999999999999999865 333 544
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCccC-CCCCccEEEec
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFT 458 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~~-~~~~~p~~~~~ 458 (556)
++|+|.||+++| |+.|+|||+|||++. +++++.|..||++||+||++...++ .+...++..++
T Consensus 304 ~~G~I~Vd~~~~------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~ 377 (490)
T 2bc0_A 304 RNGAFLVNKRQE------TSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIY 377 (490)
T ss_dssp TTSCBCCCTTCB------CSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEET
T ss_pred CCCCEEECCCcc------cCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcCCCCCCCCcccceEEEEC
Confidence 689999999999 789999999999863 4789999999999999999876432 34456666677
Q ss_pred ccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhhhcC--CcceEEEEEEcCCCCCccceEEEeCC-CchHHHHHH
Q 008714 459 HPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAEN--EGEGLAKGVPRNFASSERTNQHSDRP-SKPNLVKKL 535 (556)
Q Consensus 459 ~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~g~~kli~~~~~~~~~~g~~~~g~-~~~~~~~~l 535 (556)
+|+++++|++|++|++. |+++.+. .|..+.++..+. .+++|+|+++++ .+++|||+|++|+ .+.++|+.+
T Consensus 378 ~~~~~~vG~~~~~a~~~----g~~~~~~--~~~~~~~~~~~~~~~~~~~~kl~~~~-~~~~ilG~~~~g~~~a~e~i~~~ 450 (490)
T 2bc0_A 378 GLHMVSTGLTLEKAKRL----GFDAAVT--EYTDNQKPEFIEHGNFPVTIKIVYDK-DSRRILGAQMAAREDVSMGIHMF 450 (490)
T ss_dssp TEEEEEEECCHHHHHHT----TCCEEEE--EEEEESSCTTCCSSCCEEEEEEEEET-TTCBEEEEEEEESSCCTTHHHHH
T ss_pred CcEeEEeeCCHHHHHHc----CCceEEE--EEecCCcccccCCCCceEEEEEEEEC-CCCEEEEEEEEcCcCHHHHHHHH
Confidence 99999999999999864 8888776 577778887664 668999999998 5799999999999 798888777
Q ss_pred HHhh
Q 008714 536 ADVY 539 (556)
Q Consensus 536 ~~~~ 539 (556)
+.+.
T Consensus 451 ~~ai 454 (490)
T 2bc0_A 451 SLAI 454 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 38
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=100.00 E-value=2.7e-48 Score=423.90 Aligned_cols=374 Identities=20% Similarity=0.297 Sum_probs=285.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
.++||+|||||+||++||..|+++ |.+|+|||+ +.++-. .| +|. .+ .+..
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~----~~~lp~-----------~~--------~g~~--- 88 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA----NCGLPY-----------YI--------GGVI--- 88 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GGGHHH-----------HH--------TTSS---
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----CCCCch-----------hh--------cCcC---
Confidence 357999999999999999999999 899999999 443310 00 000 00 0000
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEc---cce--EEEeCeEEEeCCCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFG---TDN--IVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~---~~~--~~~~d~lViAtG~~p~~p~ 247 (556)
.... ..+...+....++.+++++.+..+ .+ +.+.+.+. ++. ++.||+||+|||+.|..|+
T Consensus 89 --~~~~----------~~~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~ 156 (588)
T 3ics_A 89 --TERQ----------KLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156 (588)
T ss_dssp --CCGG----------GGBSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred --CChH----------HhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCC
Confidence 0000 001111222344578998776543 22 45566653 344 7899999999999999888
Q ss_pred CCCC-CCCeEecccccccC--------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHH
Q 008714 248 GIEV-DGKTVITSDHALKL--------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQR 318 (556)
Q Consensus 248 ~~~~-~~~~v~t~~~~~~~--------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~ 318 (556)
.++. +...+++....... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+
T Consensus 157 i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~ 236 (588)
T 3ics_A 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHE 236 (588)
T ss_dssp CTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred CCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHH
Confidence 7766 44556665543322 24689999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeC
Q 008714 319 VLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVD 397 (556)
Q Consensus 319 ~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd 397 (556)
.+++ .||++++++.+++++.+++ .+.+.+| +++++|.||+|+|++||++++ +..++.. ++|+|.||
T Consensus 237 ~l~~-~GV~i~~~~~v~~i~~~~~----~v~~~~g------~~i~~D~Vi~a~G~~p~~~~l--~~~g~~~~~~g~i~vd 303 (588)
T 3ics_A 237 HMKN-HDVELVFEDGVDALEENGA----VVRLKSG------SVIQTDMLILAIGVQPESSLA--KGAGLALGVRGTIKVN 303 (588)
T ss_dssp HHHH-TTCEEECSCCEEEEEGGGT----EEEETTS------CEEECSEEEECSCEEECCHHH--HHTTCCBCGGGCBCCC
T ss_pred HHHH-cCCEEEECCeEEEEecCCC----EEEECCC------CEEEcCEEEEccCCCCChHHH--HhcCceEcCCCCEEEC
Confidence 9987 8999999999999986422 3667666 689999999999999999753 5666665 68999999
Q ss_pred CCCccccCCCCcCCCEEEecccC-------CC---CCcHHHHHHHHHHHHHHHhC-CCccCC-CCCccEEEecccceeEe
Q 008714 398 ERMRVIDANGNLVPHLYCIGDAN-------GK---MMLAHAASAQGISVVEQVTG-RDHVLN-HLSIPAACFTHPEISMV 465 (556)
Q Consensus 398 ~~l~~~~~~~t~~~~Vya~GD~~-------~~---~~~~~~A~~qg~~aa~~i~g-~~~~~~-~~~~p~~~~~~~~i~~v 465 (556)
+++| |+.|||||+|||+ +. +++++.|..||++||+||+| .+..+. ....+...|++|++++|
T Consensus 304 ~~~~------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~v 377 (588)
T 3ics_A 304 EKFQ------TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATT 377 (588)
T ss_dssp TTSB------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEE
T ss_pred Cccc------cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEe
Confidence 9999 7899999999998 32 56999999999999999998 554332 22233445899999999
Q ss_pred cCCHHHHHHhhhhcCceEEEEEEeccccch-hhhcCCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHH
Q 008714 466 GLTEPQAREKAEKEGFEVSVAKTSFKANTK-ALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLAD 537 (556)
Q Consensus 466 G~te~~a~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~ 537 (556)
|+||+||+++ |+++.+.+++. +.+ .++.++++||+||++|+ .+++|||+|++|+. +.++|+.++.
T Consensus 378 Glte~~a~~~----g~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~-~~~~ilG~~~~g~~~~~e~i~~~~~ 444 (588)
T 3ics_A 378 GLNEKILKRL----NIPYEVVHVQA--NSHAGYYPNATPVLIKLIFNK-DSGKIYGAQTLGRDGVDKRMDVIAT 444 (588)
T ss_dssp ECCHHHHHHT----TCCCEEEEEEE--ESSCTTSTTCCEEEEEEEECT-TTCBEEEEEEEESSSHHHHHHHHHH
T ss_pred cCCHHHHHHc----CCCeEEEEEec--CCccccCCCCceEEEEEEEEC-CCCeEEEEEEEcCCcHHHHHHHHHH
Confidence 9999999875 88888777553 333 35667889999999998 68999999999985 7888876644
No 39
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=100.00 E-value=3.8e-48 Score=421.26 Aligned_cols=376 Identities=19% Similarity=0.264 Sum_probs=286.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.||+|||||+||++||..|+++ +.+|+|||+ +.++.. .| +|. .+ .+..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~----~~~l~~-----------~~--------~~~~----- 53 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA----NCGLPY-----------HI--------SGEI----- 53 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GGGHHH-----------HH--------TSSS-----
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----ccCchH-----------Hh--------cCCc-----
Confidence 5899999999999999999998 899999999 443311 00 010 00 0000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEcc---c--eEEEeCeEEEeCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGT---D--NIVTAKDIIIATGSVPFVPKGI 249 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~~---~--~~~~~d~lViAtG~~p~~p~~~ 249 (556)
.... ..+...+....++.+++++.+..+ .+ +.+.+.+.+ + .++.||+||||||+.|+.|+.+
T Consensus 54 ~~~~----------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ip 123 (565)
T 3ntd_A 54 AQRS----------ALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIP 123 (565)
T ss_dssp CCGG----------GGBCCCHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT
T ss_pred CChH----------HhhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCC
Confidence 0000 000001111223468998766543 33 345565532 3 3799999999999999988877
Q ss_pred CCCCCeEecccccc---cC-----CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHh
Q 008714 250 EVDGKTVITSDHAL---KL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLI 321 (556)
Q Consensus 250 ~~~~~~v~t~~~~~---~~-----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 321 (556)
+.+...+++..... .+ ...+++++|||+|++|+|+|..|.+.|.+||++++.+++++.+++++.+.+.+.++
T Consensus 124 G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 203 (565)
T 3ntd_A 124 GVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIR 203 (565)
T ss_dssp TCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHH
Confidence 76555566554332 22 24689999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEcCceEEEEEecC-----------------CCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 322 NPRKIDYHTGVFATKITPAK-----------------DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~-----------------~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
+ .||++++++.+++++.+. ++..+.+.+.+| +++++|.||+|+|++||++++ +.
T Consensus 204 ~-~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g------~~i~~D~vi~a~G~~p~~~l~--~~ 274 (565)
T 3ntd_A 204 D-QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNG------ELLETDLLIMAIGVRPETQLA--RD 274 (565)
T ss_dssp H-TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTS------CEEEESEEEECSCEEECCHHH--HH
T ss_pred H-CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCC------CEEEcCEEEECcCCccchHHH--Hh
Confidence 7 899999999999998731 123356667665 589999999999999998753 55
Q ss_pred ccccc-CCCceeeCCCCccccCCCCcCCCEEEecccC-------CC---CCcHHHHHHHHHHHHHHHhCCCccCC-CCCc
Q 008714 385 INVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDAN-------GK---MMLAHAASAQGISVVEQVTGRDHVLN-HLSI 452 (556)
Q Consensus 385 ~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~-------~~---~~~~~~A~~qg~~aa~~i~g~~~~~~-~~~~ 452 (556)
.++.. ++|+|.||+++| |+.|||||+|||+ +. +++++.|..||++||+||+|++..++ ....
T Consensus 275 ~g~~~~~~g~i~vd~~~~------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~ 348 (565)
T 3ntd_A 275 AGLAIGELGGIKVNAMMQ------TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGT 348 (565)
T ss_dssp HTCCBCTTSSBCCCTTCB------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCC
T ss_pred CCcccCCCCCEEECCCcc------cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccc
Confidence 66665 679999999999 7899999999997 33 36899999999999999999876543 2334
Q ss_pred cEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCCCc-hH
Q 008714 453 PAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRPSK-PN 530 (556)
Q Consensus 453 p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~~~-~~ 530 (556)
+++.|++|++++||+||+||++. |+++.+.. +..+.++.++ +.++||+||++|+ .+++|||+|++|+.+ .+
T Consensus 349 ~~~~~~~~~~~~vG~~e~~a~~~----g~~~~~~~--~~~~~~~~~~~~~~~~~~k~v~~~-~~~~ilG~~~~g~~a~~e 421 (565)
T 3ntd_A 349 AICKVFDLAVGATGKNEKQLKQA----GIAFEKVY--VHTASHASYYPGAEVVSFKLLFDP-VKGTIFGAQAVGKDGIDK 421 (565)
T ss_dssp EEEEETTEEEEEEECCHHHHHHT----TCCCEEEE--EEEESSCTTSTTCCEEEEEEEECT-TTCBEEEEEEEESSSHHH
T ss_pred eEEEEcCcEEEEecCCHHHHHHc----CCCeEEEE--EecCcccCcCCCCceEEEEEEEEC-CCCEEEEEEEECCccHHH
Confidence 56778899999999999999864 88887644 5566677665 7788999999998 689999999999999 88
Q ss_pred HHHHHHH
Q 008714 531 LVKKLAD 537 (556)
Q Consensus 531 ~~~~l~~ 537 (556)
+|+.++.
T Consensus 422 ~i~~~~~ 428 (565)
T 3ntd_A 422 RIDVMAV 428 (565)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876644
No 40
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=100.00 E-value=6.1e-48 Score=407.33 Aligned_cols=373 Identities=19% Similarity=0.268 Sum_probs=286.6
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+||+|||||+||+++|..|++. |.+|+|||++. +|. .+......... .+ .
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-------~~~~~~~~~~~------------~~--------~ 53 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF-------LSAGMQLYLEG------------KV--------K 53 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB-------CGGGHHHHHTT------------SS--------C
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc-------ccccchhhhcC------------cc--------C
Confidence 3899999999999999999998 99999999943 331 11111000000 00 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEcc---ce--EEEeCeEEEeCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGT---DN--IVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~~---~~--~~~~d~lViAtG~~p~~p~~~~ 250 (556)
++.. +...+.+.+++.|++++.+..+ .+ +.+.|.+.+ ++ ++.||+||||||++|..|+.++
T Consensus 54 ~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G 122 (447)
T 1nhp_A 54 DVNS-----------VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPG 122 (447)
T ss_dssp CGGG-----------SBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTT
T ss_pred CHHH-----------hhcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCC
Confidence 0000 0001122344579999877654 23 466777643 43 4899999999999999888776
Q ss_pred CCCCeEeccccc---ccCC---C--CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-CCCHHHHHHHHHHHh
Q 008714 251 VDGKTVITSDHA---LKLE---F--VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-GFDPEIGKLAQRVLI 321 (556)
Q Consensus 251 ~~~~~v~t~~~~---~~~~---~--~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-~~d~~~~~~~~~~l~ 321 (556)
.+...++++... ..+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.++
T Consensus 123 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 202 (447)
T 1nhp_A 123 KDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEME 202 (447)
T ss_dssp TTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHH
Confidence 655557655332 2221 2 689999999999999999999999999999999999998 599999999999998
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCC
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERM 400 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l 400 (556)
+ .||++++++.+++++.+ ++...+.+ ++ .++++|.||+|+|++||++++ +.. +.. ++|+|.||+++
T Consensus 203 ~-~gv~i~~~~~v~~i~~~--~~v~~v~~-~~------~~i~~d~vi~a~G~~p~~~~~--~~~-~~~~~~G~i~Vd~~~ 269 (447)
T 1nhp_A 203 A-NNITIATGETVERYEGD--GRVQKVVT-DK------NAYDADLVVVAVGVRPNTAWL--KGT-LELHPNGLIKTDEYM 269 (447)
T ss_dssp T-TTEEEEESCCEEEEECS--SBCCEEEE-SS------CEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCCTTC
T ss_pred h-CCCEEEcCCEEEEEEcc--CcEEEEEE-CC------CEEECCEEEECcCCCCChHHH--Hhh-hhhcCCCcEEECccc
Confidence 7 89999999999999864 33323444 33 579999999999999998865 333 444 67899999999
Q ss_pred ccccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCccC-CCCCccEEEecccceeEecCCH
Q 008714 401 RVIDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFTHPEISMVGLTE 469 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~~-~~~~~p~~~~~~~~i~~vG~te 469 (556)
| |+.|+|||+|||+.. +++++.|..||+++|+||++.+.++ ++...|++.|++|+++++|+++
T Consensus 270 ~------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 343 (447)
T 1nhp_A 270 R------TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINE 343 (447)
T ss_dssp B------CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCH
T ss_pred c------CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCH
Confidence 9 789999999999862 4689999999999999999876433 3567889999999999999999
Q ss_pred HHHHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHHh
Q 008714 470 PQAREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADV 538 (556)
Q Consensus 470 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~~ 538 (556)
++|++. |+++.+.. |..+.++..+ ++++||+|+++++ .+++|+|+|++|+. +.++|+.++.+
T Consensus 344 ~~a~~~----g~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~-~~~~ilG~~~~g~~~a~e~i~~~~~a 407 (447)
T 1nhp_A 344 VMAQKL----GKETKAVT--VVEDYLMDFNPDKQKAWFKLVYDP-ETTQILGAQLMSKADLTANINAISLA 407 (447)
T ss_dssp HHHHHH----TCCCEEEE--EEEESSCTTCTTCCEEEEEEEECT-TTCBEEEEEEEESSCCTTHHHHHHHH
T ss_pred HHHHHc----CCceEEEE--EEcCCccccCCCCceEEEEEEEEC-CCCEEEEEEEEcCccHHHHHHHHHHH
Confidence 999875 77777654 5677777766 5678999999998 57999999999999 88888766543
No 41
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=100.00 E-value=1.2e-47 Score=408.46 Aligned_cols=375 Identities=20% Similarity=0.252 Sum_probs=287.2
Q ss_pred CccEEEECCChHHHHHHHHHHHc--CCeEEEecCC-cCCc-cccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD-VVGG-TCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~-~~GG-~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
++||+|||||+||+++|..|++. |.+|+|||+. .+++ .|. +|. + + . +.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~----~~~--~---------~------~--~~----- 87 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG----LPY--V---------I------S--GA----- 87 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG----HHH--H---------H------T--TS-----
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC----cch--h---------h------c--CC-----
Confidence 36999999999999999999997 8999999994 3332 111 110 0 0 0 00
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH-HHcCcEEEeceE-EEe--cCCEEEEcc---ce--EEEeCeEEEeCCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSM-KALGVDILTGVG-TIL--GPQKVKFGT---DN--IVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~~-~~~--~~~~v~~~~---~~--~~~~d~lViAtG~~p~~p~ 247 (556)
..++..+. .+..+.+ +..|++++.+.. ..+ +.+.|.+.+ ++ ++.||+||+|||+.|+.|+
T Consensus 88 ~~~~~~l~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~ 156 (480)
T 3cgb_A 88 IASTEKLI-----------ARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156 (480)
T ss_dssp SSCGGGGB-----------SSCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred cCCHHHhh-----------hcCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCC
Confidence 00111000 0001122 335999998754 333 356676643 54 7999999999999999888
Q ss_pred CCCCCCCeEecc---cccccCCC-----CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHH
Q 008714 248 GIEVDGKTVITS---DHALKLEF-----VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRV 319 (556)
Q Consensus 248 ~~~~~~~~v~t~---~~~~~~~~-----~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~ 319 (556)
.++.+...+++. ++...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.
T Consensus 157 i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~ 236 (480)
T 3cgb_A 157 WEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKE 236 (480)
T ss_dssp CBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHH
T ss_pred CCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHH
Confidence 766654445543 44443332 7899999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCC
Q 008714 320 LINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDE 398 (556)
Q Consensus 320 l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~ 398 (556)
+++ .||++++++.+++++.+ ++...+.+ ++ .++++|.||+|+|++||++++ +..++.. ++|+|.||+
T Consensus 237 l~~-~Gv~i~~~~~v~~i~~~--~~v~~v~~-~~------~~i~~D~vi~a~G~~p~~~~l--~~~g~~~~~~G~I~Vd~ 304 (480)
T 3cgb_A 237 ADK-HHIEILTNENVKAFKGN--ERVEAVET-DK------GTYKADLVLVSVGVKPNTDFL--EGTNIRTNHKGAIEVNA 304 (480)
T ss_dssp HHH-TTCEEECSCCEEEEEES--SBEEEEEE-TT------EEEECSEEEECSCEEESCGGG--TTSCCCBCTTSCBCCCT
T ss_pred HHH-cCcEEEcCCEEEEEEcC--CcEEEEEE-CC------CEEEcCEEEECcCCCcChHHH--HhCCcccCCCCCEEECC
Confidence 987 89999999999999864 33333444 32 479999999999999998765 5566665 678999999
Q ss_pred CCccccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCccC-CCCCccEEEecccceeEecC
Q 008714 399 RMRVIDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFTHPEISMVGL 467 (556)
Q Consensus 399 ~l~~~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~~-~~~~~p~~~~~~~~i~~vG~ 467 (556)
++| |+.|+|||+|||+.. +++++.|..||+++|+||++++..+ ++..+|++.|++|+++++|+
T Consensus 305 ~~~------ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~ 378 (480)
T 3cgb_A 305 YMQ------TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGL 378 (480)
T ss_dssp TSB------CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEEC
T ss_pred Ccc------CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCC
Confidence 999 789999999999832 3689999999999999999876554 46678999999999999999
Q ss_pred CHHHHHHhhhhcCceEEEEEEeccccchhhhc-CCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHHhh
Q 008714 468 TEPQAREKAEKEGFEVSVAKTSFKANTKALAE-NEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADVY 539 (556)
Q Consensus 468 te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~~~ 539 (556)
||+||++. |+++.+..+.+ +.++... +.++||+|+++++ .+++|+|++++|+. +.++|+.++.+.
T Consensus 379 ~~~~a~~~----g~~~~~~~~~~--~~~~~~~~~~~~~~~kl~~~~-~~~~ilG~~~vg~~~a~e~i~~~~~ai 445 (480)
T 3cgb_A 379 NEKEAKGL----HIPYKTVKVDS--TNMAGYYPNAKPLYLKLLYRS-DTKQLLGGQVIGEEGVDKRIDVIAMAL 445 (480)
T ss_dssp CHHHHHHT----TCCEEEEEEEE--ESSCTTSTTCCEEEEEEEEET-TTCBEEEEEEEESSSHHHHHHHHHHHH
T ss_pred CHHHHHHc----CCceEEEEEec--CCcccccCCCceEEEEEEEEC-CCCEEEEEEEECCccHHHHHHHHHHHH
Confidence 99999874 88888766554 4444433 5678999999997 57999999999999 889988876543
No 42
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=100.00 E-value=3.3e-45 Score=378.86 Aligned_cols=358 Identities=19% Similarity=0.239 Sum_probs=277.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
++||+|||||+||++||..|++.| .+|+|||++. +|.|++.++.... . . ..
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--------g~~~~~~~l~~~~-----------~-~-------~~ 56 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--------GRSYSKPMLSTGF-----------S-K-------NK 56 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--------CCEECGGGGGGTT-----------T-T-------TC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--------CCccCcccccHHH-----------h-C-------CC
Confidence 489999999999999999999998 5689999843 4566555432110 0 0 00
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHHcCcEEEece-EEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRN-NLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~g~-~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
.. .++.. .+...+++.+++++.+. +..++ .+.|.+.+ .++.||+||+|||+.|..|+.++.+..
T Consensus 57 ~~-----------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~g~~~~ 124 (384)
T 2v3a_A 57 DA-----------DGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEGDAQD 124 (384)
T ss_dssp CH-----------HHHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCCBSTTTT
T ss_pred CH-----------HHhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCCCcCcC
Confidence 11 11111 12334456799998764 33333 47788765 579999999999999998887766545
Q ss_pred eEecccccccCC------CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceE
Q 008714 255 TVITSDHALKLE------FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 255 ~v~t~~~~~~~~------~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~ 327 (556)
.+++.++...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++ .||+
T Consensus 125 ~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~-~gv~ 203 (384)
T 2v3a_A 125 ALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEG-LGVR 203 (384)
T ss_dssp CEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHT-TTCE
T ss_pred CEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHH-cCCE
Confidence 577665554322 23899999999999999999999999999999999999988 589999999999987 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANG 407 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~ 407 (556)
+++++.+++++.+++ .+.+++.+| +++++|.|++|+|++||++++ +..++..++| |.||+++|
T Consensus 204 i~~~~~v~~i~~~~~--~~~v~~~~g------~~i~~d~vv~a~G~~p~~~l~--~~~g~~~~~g-i~vd~~~~------ 266 (384)
T 2v3a_A 204 FHLGPVLASLKKAGE--GLEAHLSDG------EVIPCDLVVSAVGLRPRTELA--FAAGLAVNRG-IVVDRSLR------ 266 (384)
T ss_dssp EEESCCEEEEEEETT--EEEEEETTS------CEEEESEEEECSCEEECCHHH--HHTTCCBSSS-EEECTTCB------
T ss_pred EEeCCEEEEEEecCC--EEEEEECCC------CEEECCEEEECcCCCcCHHHH--HHCCCCCCCC-EEECCCCC------
Confidence 999999999987532 366777766 689999999999999998743 5667766677 99999999
Q ss_pred CcCCCEEEecccCC--C--CCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecc-cceeEecCCHHHHHHhhhhcCce
Q 008714 408 NLVPHLYCIGDANG--K--MMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTH-PEISMVGLTEPQAREKAEKEGFE 482 (556)
Q Consensus 408 t~~~~Vya~GD~~~--~--~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~-~~i~~vG~te~~a~~~~~~~~~~ 482 (556)
|+.|||||+|||+. . ..+++.|..||+++|+||+|++.+++|..+|+++|+. +++.++|+++.+. + .
T Consensus 267 t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~-------~-~ 338 (384)
T 2v3a_A 267 TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGMD-------G-Q 338 (384)
T ss_dssp CSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECCTTSCEEEECCCTTCC-------C-E
T ss_pred CCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCeeEEEecCCCCCC-------c-e
Confidence 78999999999984 2 2367889999999999999988788899999999986 5899999876321 1 1
Q ss_pred EEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 483 VSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 483 ~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+...++++||.|++++++ ++|+|++++|+.+.++++.+..+
T Consensus 339 -------------~~~~~~~~g~~~~~~~~~--~~i~G~~~~g~~a~e~~~~~~~~ 379 (384)
T 2v3a_A 339 -------------WLVEGSGTDLKVLCRDTA--GRVIGYALTGAAVNEKLALNKEL 379 (384)
T ss_dssp -------------EEEEEETTEEEEEEECTT--SCEEEEEEEGGGGGGHHHHHTTC
T ss_pred -------------EEEEecCCcEEEEEEccC--CEEEEEEEECcchHHHHHHHHhh
Confidence 111234568999998843 89999999999999988877544
No 43
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=2.7e-45 Score=376.44 Aligned_cols=331 Identities=19% Similarity=0.236 Sum_probs=249.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.||+|||||+||++||..|+++| +|+|||++..++ .++.++.. .+. + ..++.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--------~~~~~l~~-----~~~--------g------~~~~~ 60 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--------YSKPMLSH-----YIA--------G------FIPRN 60 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--------CCSTTHHH-----HHT--------T------SSCGG
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--------cccchhHH-----HHh--------C------CCCHH
Confidence 58999999999999999999999 999999954321 01111110 000 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEec
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVIT 258 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t 258 (556)
.+. ....+.+++.|++++.+. +..++ .+.|. .+++++.||+||||||++|+.|+.++. ..+++
T Consensus 61 ~~~-----------~~~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~--~~v~~ 126 (367)
T 1xhc_A 61 RLF-----------PYSLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGK--EYLLT 126 (367)
T ss_dssp GGC-----------SSCHHHHHHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTG--GGEEC
T ss_pred Hhc-----------cCCHHHHHhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCc--CCEEE
Confidence 110 011223345699999985 55554 45666 566789999999999999998876662 34554
Q ss_pred cc---ccccCCC---CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCc
Q 008714 259 SD---HALKLEF---VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 259 ~~---~~~~~~~---~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
.. ++..+.. .+++++|||+|++|+|+|..|++.|.+||++++.+++++ +++++.+.+.+.+++ .||++++++
T Consensus 127 ~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~-~gV~i~~~~ 204 (367)
T 1xhc_A 127 LRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEE-TGVKFFLNS 204 (367)
T ss_dssp CCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHH-TTEEEECSC
T ss_pred EcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHH-CCCEEEcCC
Confidence 43 3333322 358999999999999999999999999999999999999 999999999999987 899999999
Q ss_pred eEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCC
Q 008714 333 FATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPH 412 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~ 412 (556)
.+++++. + .+++.+| + +++|.|++|+|++||++++ +..++..++| |.||+++| |+.||
T Consensus 205 ~v~~i~~--~----~v~~~~g------~-i~~D~vi~a~G~~p~~~ll--~~~gl~~~~g-i~Vd~~~~------t~~~~ 262 (367)
T 1xhc_A 205 ELLEANE--E----GVLTNSG------F-IEGKVKICAIGIVPNVDLA--RRSGIHTGRG-ILIDDNFR------TSAKD 262 (367)
T ss_dssp CEEEECS--S----EEEETTE------E-EECSCEEEECCEEECCHHH--HHTTCCBSSS-EECCTTSB------CSSTT
T ss_pred EEEEEEe--e----EEEECCC------E-EEcCEEEECcCCCcCHHHH--HhCCCCCCCC-EEECCCcc------cCCCC
Confidence 9999862 1 3666665 4 9999999999999998743 5667766666 99999999 78999
Q ss_pred EEEecccCC---C-CCcHHHHHHHHHHHHHHHhCCCccCCCCCccE--EEecccceeEecCCHHHHHHhhhhcCceEEEE
Q 008714 413 LYCIGDANG---K-MMLAHAASAQGISVVEQVTGRDHVLNHLSIPA--ACFTHPEISMVGLTEPQAREKAEKEGFEVSVA 486 (556)
Q Consensus 413 Vya~GD~~~---~-~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~--~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~ 486 (556)
|||+|||+. . +++++.|..||++||+||++++.++++ ..|. +.|++|+++++|++|+++ .++
T Consensus 263 IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~--------~~~--- 330 (367)
T 1xhc_A 263 VYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEPRRYNF-KFRSTVFKFGKLQIAIIGNTKGEG--------KWI--- 330 (367)
T ss_dssp EEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTCCCCCCS-SCCEEEEEETTEEEEEEECCSSCE--------EEE---
T ss_pred EEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCCCccCCC-CCCceEEEECCceEEEECCCCCCC--------ccc---
Confidence 999999973 2 578999999999999999987765555 3343 579999999999998742 111
Q ss_pred EEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCch
Q 008714 487 KTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKP 529 (556)
Q Consensus 487 ~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~ 529 (556)
++|+|+++++ ++|+|++++|+.+.
T Consensus 331 ----------------~~~~k~~~~~---~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 331 ----------------EDNTKVFYEN---GKIIGAVVFNDIRK 354 (367)
T ss_dssp ----------------ETTEEEEC--------CEEEEESCHHH
T ss_pred ----------------ceEEEEEEEC---CEEEEEEEECChHH
Confidence 5899999984 79999999998764
No 44
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=100.00 E-value=2.6e-42 Score=356.01 Aligned_cols=334 Identities=18% Similarity=0.214 Sum_probs=254.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc-cccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG-TCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG-~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+++|+|||||+||++||..|++.+.+|+|||+ +.++. .+. +| + .+. +. .
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~----l~-~----------~l~--------g~------~ 59 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPR----LN-E----------IIA--------KN------K 59 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGG----HH-H----------HHH--------SC------C
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccCh----hh-H----------HHc--------CC------C
Confidence 36899999999999999999778999999999 43331 110 00 0 000 00 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
+. +++.....+++++.+++++.+. +..+ +.+.|.+.+++++.||+||||||++|+.|+.++.+ .
T Consensus 60 ~~-----------~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~--~ 126 (385)
T 3klj_A 60 SI-----------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD--E 126 (385)
T ss_dssp CG-----------GGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCS--C
T ss_pred CH-----------HHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCC--C
Confidence 00 0011111233456799999884 4443 46789898888999999999999999998877765 4
Q ss_pred Eec---ccccccCCC---CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008714 256 VIT---SDHALKLEF---VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 256 v~t---~~~~~~~~~---~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~ 328 (556)
+++ .++...+.. .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.+++ .||++
T Consensus 127 v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~-~gV~~ 205 (385)
T 3klj_A 127 IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDR-LGIKI 205 (385)
T ss_dssp EECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHT-TTCEE
T ss_pred eEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh-CCCEE
Confidence 554 344433332 2789999999999999999999999999999999999998 999999999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t 408 (556)
++++.++++ + +++++|.||+|+|++||++++ +..++..++| |.||+++| |
T Consensus 206 ~~~~~v~~i---------------g------~~~~~D~vv~a~G~~p~~~~~--~~~gl~~~~g-i~vd~~~~------t 255 (385)
T 3klj_A 206 YTNSNFEEM---------------G------DLIRSSCVITAVGVKPNLDFI--KDTEIASKRG-ILVNDHME------T 255 (385)
T ss_dssp ECSCCGGGC---------------H------HHHHHSEEEECCCEEECCGGG--TTSCCCBSSS-EEECTTCB------C
T ss_pred EeCCEEEEc---------------C------eEEecCeEEECcCcccChhhh--hhcCCCcCCC-EEECCCcc------c
Confidence 998766544 2 578999999999999999865 5667766766 99999999 7
Q ss_pred cCCCEEEecccCC----CCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEe--cccceeEecCCHHHHHHhhhhcCce
Q 008714 409 LVPHLYCIGDANG----KMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACF--THPEISMVGLTEPQAREKAEKEGFE 482 (556)
Q Consensus 409 ~~~~Vya~GD~~~----~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~--~~~~i~~vG~te~~a~~~~~~~~~~ 482 (556)
+.|+|||+|||+. .+.++..|..||++||+||+|+..+++. ..|+.++ .+++++++|+++.+. .+
T Consensus 256 ~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~--------~~ 326 (385)
T 3klj_A 256 SIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASYSE-IIPSPILKVSGISIISCGDIENNK--------PS 326 (385)
T ss_dssp SSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCCCCC-CCCCCEEEETTEEEEEESCCTTCC--------CS
T ss_pred CCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcCCCC-CCCcEEEEeCCCcEEEEcCCCCCC--------Ce
Confidence 8999999999986 4678999999999999999998765432 2455544 688999999998541 11
Q ss_pred EEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHH
Q 008714 483 VSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNL 531 (556)
Q Consensus 483 ~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~ 531 (556)
.. .. .....+|.|++++. ++++|++++|..+...
T Consensus 327 ~~-~~-----------~~~~~~~~~~~~~~---~~l~g~~~~g~~~~~~ 360 (385)
T 3klj_A 327 KV-FR-----------STQEDKYIVCMLKE---NKIDAAAVIGDVSLGT 360 (385)
T ss_dssp EE-EE-----------EECSSCEEEEEEET---TEEEEEEEESCHHHHH
T ss_pred EE-EE-----------ECCCCeEEEEEEEC---CEEEEEEEECCcHHHH
Confidence 11 11 13346899999975 7999999999987554
No 45
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9e-41 Score=335.73 Aligned_cols=291 Identities=23% Similarity=0.283 Sum_probs=215.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+||||||||++||.+|+++|++|+|||++.+||+|.+.+|+|..+-. ....
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~------------------------~~~~ 60 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGF------------------------EMIT 60 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTC------------------------SSBC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCc------------------------cccc
Confidence 4699999999999999999999999999999999999999999998642210 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE---EecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC---C
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD---G 253 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~---~ 253 (556)
.. ++.........+.+..+..+... ......+...++.+++||+||||||++|+.|++++.+ +
T Consensus 61 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~ 129 (312)
T 4gcm_A 61 GP-----------DLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGG 129 (312)
T ss_dssp HH-----------HHHHHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBT
T ss_pred hH-----------HHHHHHHHHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCC
Confidence 11 12222233344456666555332 2223344455678999999999999999888766543 3
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+++..........+|+++|||+|++|+|+|..|+++|.+||++++.+++++..+ ...+.+++ .++.......
T Consensus 130 ~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~ 203 (312)
T 4gcm_A 130 RGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRI-----LQDRAFKN-DKIDFIWSHT 203 (312)
T ss_dssp TTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHH-----HHHHHHHC-TTEEEECSEE
T ss_pred ccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchh-----HHHHHHHh-cCcceeeecc
Confidence 45655555555556789999999999999999999999999999999999877421 12334444 7888888877
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCE
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
+..+...+.. ........ ....+...+++|.|++++|.+|+..++ +..++..++|+|.||++|| |++|||
T Consensus 204 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~d~v~~~~g~~~~~~~~--~~~g~~~~~G~I~vd~~~~------Ts~pgI 273 (312)
T 4gcm_A 204 LKSINEKDGK-VGSVTLTS-TKDGSEETHEADGVFIYIGMKPLTAPF--KDLGITNDVGYIVTKDDMT------TSVPGI 273 (312)
T ss_dssp EEEEEEETTE-EEEEEEEE-TTTCCEEEEECSEEEECSCEEESCGGG--GGGTCBCTTSCBCCCTTSB------CSSTTE
T ss_pred eeeeeccccc-cccceeee-ecCCceeEEeeeeEEeecCCCcCchhH--HhcceecCCCeEeeCCCCc------cCCCCE
Confidence 7666554221 11111111 112334689999999999999998765 5566667899999999999 799999
Q ss_pred EEecccCC-CCCcHHHHHHHHHHHHHHHh
Q 008714 414 YCIGDANG-KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 414 ya~GD~~~-~~~~~~~A~~qg~~aa~~i~ 441 (556)
||+|||++ ++++++.|..||++||+||.
T Consensus 274 yA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 274 FAAGDVRDKGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp EECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999997 46799999999999999986
No 46
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=8.7e-40 Score=341.72 Aligned_cols=349 Identities=21% Similarity=0.255 Sum_probs=260.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCe--EEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLK--TAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~--V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
.++||+|||||+||++||..|++.|.+ |+|||+ +.++.... . + ++.++. +.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~--~-l-~~~~~~-----------------~~----- 61 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP--P-L-SKEYLA-----------------RE----- 61 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG--G-G-GTTTTT-----------------TS-----
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc--c-C-CHHHHc-----------------CC-----
Confidence 458999999999999999999999987 999999 43322100 0 0 000000 00
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEec-eEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG 253 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~ 253 (556)
.... .+.......+.+.+++++.+ .+..++ .+.|.+.++.++.||+||+|||+.|+.|+.++.+.
T Consensus 62 -~~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~ 129 (415)
T 3lxd_A 62 -KTFE-----------RICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADL 129 (415)
T ss_dssp -SCSG-----------GGBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCC
T ss_pred -CCHH-----------HhccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccc
Confidence 0000 00001122344579999998 555443 56888888889999999999999999887766655
Q ss_pred CeEec---ccccccCC---CC-CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCc
Q 008714 254 KTVIT---SDHALKLE---FV-PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 254 ~~v~t---~~~~~~~~---~~-~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~g 325 (556)
..+++ .+++..+. .. +++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+.+.+.+++ .|
T Consensus 130 ~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~-~G 208 (415)
T 3lxd_A 130 AGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRA-HG 208 (415)
T ss_dssp BTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHH-TT
T ss_pred cCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHh-CC
Confidence 55553 33333322 23 899999999999999999999999999999999999986 899999999999987 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccC
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDA 405 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~ 405 (556)
|++++++.+++++.+ +++...+++.+| +++++|.||+|+|++||++++ +..++..++| |.||+++|
T Consensus 209 V~i~~~~~v~~i~~~-~~~v~~v~l~dG------~~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~~g-i~vd~~~~---- 274 (415)
T 3lxd_A 209 VDLRTGAAMDCIEGD-GTKVTGVRMQDG------SVIPADIVIVGIGIVPCVGAL--ISAGASGGNG-VDVDEFCR---- 274 (415)
T ss_dssp CEEEETCCEEEEEES-SSBEEEEEESSS------CEEECSEEEECSCCEESCHHH--HHTTCCCSSS-EECCTTCB----
T ss_pred CEEEECCEEEEEEec-CCcEEEEEeCCC------CEEEcCEEEECCCCccChHHH--HhCCCCcCCC-EEECCCCC----
Confidence 999999999999875 455557888887 689999999999999999754 5566666666 99999999
Q ss_pred CCCcCCCEEEecccCCCCC-----------cHHHHHHHHHHHHHHHhCCCccCCCCCccEE--EecccceeEecCCHHHH
Q 008714 406 NGNLVPHLYCIGDANGKMM-----------LAHAASAQGISVVEQVTGRDHVLNHLSIPAA--CFTHPEISMVGLTEPQA 472 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~~~-----------~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~--~~~~~~i~~vG~te~~a 472 (556)
|+.|+|||+|||+..+. +++.|..||++||+||+|++. +|..+|+. -+.+..+.++|+++..
T Consensus 275 --t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~- 349 (415)
T 3lxd_A 275 --TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV--PYKATPWFWSNQYDLKLQTVGLSTGH- 349 (415)
T ss_dssp --CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEEECCTTC-
T ss_pred --cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCC--CCCCCCeeEeeeCCcEEEEEeCCCCC-
Confidence 78999999999986543 468999999999999999865 45567753 3345688999998521
Q ss_pred HHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
-++. .... .....|.+++++. ++++|+.++|...
T Consensus 350 --------~~~~-~~~~----------~~~~~~~~~~~~~---~~~~g~~~~~~~~ 383 (415)
T 3lxd_A 350 --------DNAV-LRGD----------PATRSFSVVYLKG---GKVVALDCVNMVK 383 (415)
T ss_dssp --------SEEE-EEEE----------GGGTEEEEEEEET---TEEEEEEEESCHH
T ss_pred --------CEEE-EEec----------CCCCeEEEEEEEC---CEEEEEEEECChH
Confidence 1211 1111 1235688888865 6999999999754
No 47
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=100.00 E-value=3.8e-40 Score=345.57 Aligned_cols=354 Identities=17% Similarity=0.195 Sum_probs=258.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC--eEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+||+|||||+||+++|..|+++|. +|+|||++ .++.. .+..++.++...
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~l~~~~~~~~----------------------- 56 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH----LPPLSKAYLAGK----------------------- 56 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC----SGGGGTTTTTTC-----------------------
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc----CCCCcHHHhCCC-----------------------
Confidence 4899999999999999999999998 79999984 22210 000011111000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
..... +...+.+.+++.|++++.+.. ..++ .+.|.+.+++++.||+||+|||+.|+.|+.++.+..
T Consensus 57 ~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~ 125 (431)
T 1q1r_A 57 ATAES-----------LYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVG 125 (431)
T ss_dssp SCSGG-----------GBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHH
T ss_pred CChHH-----------hcccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccC
Confidence 00000 000011234557999998853 4443 568888888889999999999999988876554322
Q ss_pred e---Ee---cccccccCC---CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCC
Q 008714 255 T---VI---TSDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPR 324 (556)
Q Consensus 255 ~---v~---t~~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~ 324 (556)
. ++ +.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++ .
T Consensus 126 ~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~ 204 (431)
T 1q1r_A 126 KANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE-A 204 (431)
T ss_dssp HSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH-H
T ss_pred CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHh-C
Confidence 2 43 344443332 35899999999999999999999999999999999999987 899999999999987 8
Q ss_pred ceEEEcCceEEEEEec-CCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccc
Q 008714 325 KIDYHTGVFATKITPA-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVI 403 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~-~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~ 403 (556)
||++++++.+++++.. ++++...+++.+| +++++|.||+|+|++||++++ +..++..++| |.||+++|
T Consensus 205 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G------~~i~~D~Vv~a~G~~p~~~l~--~~~gl~~~~g-i~Vd~~~~-- 273 (431)
T 1q1r_A 205 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDG------TRLPADLVIAGIGLIPNCELA--SAAGLQVDNG-IVINEHMQ-- 273 (431)
T ss_dssp TCEEECSCCEEEEEECTTTCCEEEEEETTS------CEEECSEEEECCCEEECCHHH--HHTTCCBSSS-EECCTTSB--
T ss_pred CeEEEeCCEEEEEEeccCCCcEEEEEeCCC------CEEEcCEEEECCCCCcCcchh--hccCCCCCCC-EEECCCcc--
Confidence 9999999999999862 2444446777776 689999999999999998754 5566666666 99999999
Q ss_pred cCCCCcCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEe--cccceeEecCCHHH
Q 008714 404 DANGNLVPHLYCIGDANGKM----------MLAHAASAQGISVVEQVTGRDHVLNHLSIPAACF--THPEISMVGLTEPQ 471 (556)
Q Consensus 404 ~~~~t~~~~Vya~GD~~~~~----------~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~--~~~~i~~vG~te~~ 471 (556)
|+.|+|||+|||+..+ ..+..|..||+++|+||+|+.. +|..+|+++. .++++.++|+++.
T Consensus 274 ----ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~- 346 (431)
T 1q1r_A 274 ----TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP--RDEAAPWFWSDQYEIGLKMVGLSEG- 346 (431)
T ss_dssp ----CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEEECCTT-
T ss_pred ----cCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC--CCCCCCeEEEEECCceEEEEeCCCC-
Confidence 7899999999998653 2578899999999999998764 4566887632 2468999999862
Q ss_pred HHHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHH
Q 008714 472 AREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVK 533 (556)
Q Consensus 472 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~ 533 (556)
..++.+ ... .+...|++++.+ + ++++|++++|..+...+.
T Consensus 347 --------~~~~~~-~~~----------~~~~~~~~~~~~-~--~~l~G~~~~g~~~~~~~~ 386 (431)
T 1q1r_A 347 --------YDRIIV-RGS----------LAQPDFSVFYLQ-G--DRVLAVDTVNRPVEFNQS 386 (431)
T ss_dssp --------CSEEEE-EEE----------TTTTEEEEEEEE-T--TEEEEEEEESCHHHHHHH
T ss_pred --------CCEEEE-Ecc----------CCCCeEEEEEEe-C--CEEEEEEEECChHHHHHH
Confidence 112211 111 123467666544 3 799999999998766554
No 48
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=100.00 E-value=1.3e-39 Score=339.33 Aligned_cols=341 Identities=18% Similarity=0.226 Sum_probs=254.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC--eEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
..+||+|||||++|+++|..|+++|. +|+|||++ .++. ..|..++.++... . ....
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~~~~~~~~~~~~-----~-----~~~~------- 64 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY----DRPPLSKDFMAHG-----D-----AEKI------- 64 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB----CSGGGGTHHHHHC-----C-----GGGS-------
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc----cCCCCCHHHhCCC-----c-----hhhh-------
Confidence 35899999999999999999999988 49999994 3221 1111111111000 0 0000
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCC-CCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKG-IEVD 252 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~-~~~~ 252 (556)
.+ . .+++.+++++.+. +..++ .+.|.+.++.++.||+||+|||+.|..|+. ++.+
T Consensus 65 ~~--------------------~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~ 123 (408)
T 2gqw_A 65 RL--------------------D-CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGAT 123 (408)
T ss_dssp BC--------------------C-CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCS
T ss_pred hH--------------------H-HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCC
Confidence 00 0 2234689999986 55554 578888888889999999999999988876 6654
Q ss_pred CCeEe---cccccccCC---CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCc
Q 008714 253 GKTVI---TSDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 253 ~~~v~---t~~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~g 325 (556)
..++ +.++...+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.+++ .|
T Consensus 124 -~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~G 201 (408)
T 2gqw_A 124 -MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAA-QG 201 (408)
T ss_dssp -SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHH-TT
T ss_pred -CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHH-cC
Confidence 3444 444443332 24799999999999999999999999999999999999986 999999999999987 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccC
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDA 405 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~ 405 (556)
|++++++.+++++ + + .+++.+| +++++|.||+|+|++||++++ +..++..++| |.||+++|
T Consensus 202 V~i~~~~~v~~i~-~--~---~v~~~~g------~~i~~D~vi~a~G~~p~~~l~--~~~gl~~~~g-i~Vd~~~~---- 262 (408)
T 2gqw_A 202 VDLRFERSVTGSV-D--G---VVLLDDG------TRIAADMVVVGIGVLANDALA--RAAGLACDDG-IFVDAYGR---- 262 (408)
T ss_dssp CEEEESCCEEEEE-T--T---EEEETTS------CEEECSEEEECSCEEECCHHH--HHHTCCBSSS-EECCTTCB----
T ss_pred cEEEeCCEEEEEE-C--C---EEEECCC------CEEEcCEEEECcCCCccHHHH--HhCCCCCCCC-EEECCCCc----
Confidence 9999999999998 3 2 4677766 689999999999999998754 5566666666 99999999
Q ss_pred CCCcCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEe--cccceeEecCCHHHHH
Q 008714 406 NGNLVPHLYCIGDANGKM----------MLAHAASAQGISVVEQVTGRDHVLNHLSIPAACF--THPEISMVGLTEPQAR 473 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~~----------~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~--~~~~i~~vG~te~~a~ 473 (556)
|+.|+|||+|||+..+ .++..|..||+++|+||+|.... +|..+|+++. .+++++++|+ +.
T Consensus 263 --t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~p~~~~~~~~~~~~~~G~-~~--- 335 (408)
T 2gqw_A 263 --TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAP-GYAELPWYWSDQGALRIQVAGL-AS--- 335 (408)
T ss_dssp --CSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTSC-CCCCCCEEEEEETTEEEEEEEC-SC---
T ss_pred --cCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCCC-cCCCCCeEEEEECCceEEEECC-CC---
Confidence 7899999999998653 36889999999999999987652 5667887643 3479999999 21
Q ss_pred HhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
..++.+ . .. ......+|.+++.+ + ++++|++++|..+
T Consensus 336 ------~~~~~~-~----~~----~~~~~~~~~~~~~~-~--~~l~G~~~~g~~~ 372 (408)
T 2gqw_A 336 ------GDEEIV-R----GE----VSLDAPKFTLIELQ-K--GRIVGATCVNNAR 372 (408)
T ss_dssp ------CSEEEE-E----SC----CCSSSCCEEEEEEE-T--TEEEEEEEESCHH
T ss_pred ------CCEEEE-E----cc----CCCCCCeEEEEEEe-C--CEEEEEEEECChH
Confidence 112211 1 11 01114578777775 3 7999999999875
No 49
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=1.9e-39 Score=326.13 Aligned_cols=296 Identities=22% Similarity=0.256 Sum_probs=218.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+..|||+||||||||++||.+|+++|++|+|||+...||.|.+ ||+|++.+++.. .+++. ..
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~-G~~~~~~~i~~~--------------~g~~~---~i 63 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG-GQLTTTTIIENF--------------PGFPN---GI 63 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT-CGGGGSSEECCS--------------TTCTT---CE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC-CCcCChHHhhhc--------------cCCcc---cC
Confidence 4469999999999999999999999999999999999999986 898876553210 11110 11
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe----cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC--
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL----GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD-- 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~-- 252 (556)
+. .++...+...+++.++++........ +.+.+.+.++.++.||+||||||++|+.|++++.+
T Consensus 64 ~~-----------~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~ 132 (314)
T 4a5l_A 64 DG-----------NELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKY 132 (314)
T ss_dssp EH-----------HHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHH
T ss_pred CH-----------HHHHHHHHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccc
Confidence 22 23334445566678888887765533 23456667778999999999999999888766543
Q ss_pred -CCeEecccccccCC--CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEE
Q 008714 253 -GKTVITSDHALKLE--FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 253 -~~~v~t~~~~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
+..+.......... ..+++++|||+|++|+|+|..|+++|.+||+++|.+.+.. .++. ..+.... .++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~~~---~~~~~~~-~~~~~~ 206 (314)
T 4a5l_A 133 WQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SKTM---QERVLNH-PKIEVI 206 (314)
T ss_dssp BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTC-TTEEEE
T ss_pred cccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cchh---hhhhhcc-cceeeE
Confidence 23444444443332 4579999999999999999999999999999998876543 3332 2333433 788899
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCC
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t 408 (556)
....+.++...+ .....+.+.+.. ..+.+++++|.|++++|++||++++... +.. ++|+| ||+++| |
T Consensus 207 ~~~~~~~i~~~~-~~~~~~~~~~~~-~~~~~~i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~------T 274 (314)
T 4a5l_A 207 WNSELVELEGDG-DLLNGAKIHNLV-SGEYKVVPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPK------T 274 (314)
T ss_dssp CSEEEEEEEESS-SSEEEEEEEETT-TCCEEEEECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTB------C
T ss_pred eeeeeEEEEeee-eccceeEEeecc-cccceeeccccceEecccccChhHhccc---ceEcCCeeE-eCCCCc------c
Confidence 988888887653 333334444332 1234689999999999999999987532 334 67755 899999 8
Q ss_pred cCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q 008714 409 LVPHLYCIGDANGKM-MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 409 ~~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i~ 441 (556)
++|||||+|||++.+ +++..|+.||++||.++.
T Consensus 275 s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 275 SVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999875 589999999999998874
No 50
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=100.00 E-value=3.6e-39 Score=335.74 Aligned_cols=347 Identities=21% Similarity=0.248 Sum_probs=258.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--eEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.||+|||||+||++||..|++.|. +|+|||++. ++.... .+ ++.++ . ..........
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~---~l-~~~~l---------------~-~~~~~~~~~~ 61 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP---PL-SKAYL---------------K-SGGDPNSLMF 61 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG---GG-GTGGG---------------G-SCCCTTSSBS
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc---cC-CHHHH---------------C-CCCCHHHccC
Confidence 589999999999999999999998 899999943 221100 00 00000 0 0000000000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
.....+.+.+++++...+..++ .+.|.+.++.++.||+||+|||+.|+.|+.++.+...+
T Consensus 62 ------------------~~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v 123 (404)
T 3fg2_P 62 ------------------RPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDV 123 (404)
T ss_dssp ------------------SCHHHHHHTTEEEECCCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTE
T ss_pred ------------------CCHHHHHhCCCEEEEEEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcE
Confidence 1112344579999886665443 56788888889999999999999999887776655556
Q ss_pred ecc---cccccC---CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEEE
Q 008714 257 ITS---DHALKL---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 257 ~t~---~~~~~~---~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
++. ++...+ ...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++ .||+++
T Consensus 124 ~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~i~ 202 (404)
T 3fg2_P 124 LYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSG-AGIRMH 202 (404)
T ss_dssp ECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH-TTCEEE
T ss_pred EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHh-CCcEEE
Confidence 543 333222 235799999999999999999999999999999999999886 899999999999987 899999
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCc
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNL 409 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~ 409 (556)
+++.+++++.+ +++...+++.+| +++++|.||+|+|.+||++++ +..++..++| |.||+++| |+
T Consensus 203 ~~~~v~~i~~~-~~~v~~V~~~dG------~~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~~G-i~vd~~~~------t~ 266 (404)
T 3fg2_P 203 YGVRATEIAAE-GDRVTGVVLSDG------NTLPCDLVVVGVGVIPNVEIA--AAAGLPTAAG-IIVDQQLL------TS 266 (404)
T ss_dssp CSCCEEEEEEE-TTEEEEEEETTS------CEEECSEEEECCCEEECCHHH--HHTTCCBSSS-EEECTTSB------CS
T ss_pred ECCEEEEEEec-CCcEEEEEeCCC------CEEEcCEEEECcCCccCHHHH--HhCCCCCCCC-EEECCCcc------cC
Confidence 99999999875 345556888887 689999999999999998754 5566666667 99999999 78
Q ss_pred CCCEEEecccCCCCC----------cHHHHHHHHHHHHHHHhCCCccCCCCCccEE--EecccceeEecCCHHHHHHhhh
Q 008714 410 VPHLYCIGDANGKMM----------LAHAASAQGISVVEQVTGRDHVLNHLSIPAA--CFTHPEISMVGLTEPQAREKAE 477 (556)
Q Consensus 410 ~~~Vya~GD~~~~~~----------~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~--~~~~~~i~~vG~te~~a~~~~~ 477 (556)
.|+|||+|||+..+. .++.|..||++||+||+|++. +|..+|+. -+.+..+.++|++..
T Consensus 267 ~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~------- 337 (404)
T 3fg2_P 267 DPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAK--PYDGYPWFWSDQGDDKLQIVGLTAG------- 337 (404)
T ss_dssp STTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCC--CCCCCCEEEEEETTEEEEEEECCTT-------
T ss_pred CCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCC--CCCCCCceEeEECCcEEEEEeCCCC-------
Confidence 999999999975432 489999999999999999864 45566753 344568889999742
Q ss_pred hcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 478 KEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
.-++ +.... .....|.|++++. ++++|+.++|...
T Consensus 338 --~~~~-~~~~~----------~~~~~~~~~~~~~---~~~~g~~~~~~~~ 372 (404)
T 3fg2_P 338 --FDQV-VIRGS----------VAERSFSAFCYKA---GKLIGIESVNRAA 372 (404)
T ss_dssp --CCEE-EEEEE----------TTTTEEEEEEEET---TEEEEEEEESCHH
T ss_pred --CCEE-EEEec----------CCCCcEEEEEEEC---CEEEEEEEeCCHH
Confidence 1111 11111 2345788888865 6999999999764
No 51
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=100.00 E-value=2.2e-39 Score=337.84 Aligned_cols=345 Identities=22% Similarity=0.262 Sum_probs=256.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCe--EEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLK--TAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~--V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.||+|||||+||++||..|+++|.+ |+|||+ +.++... ..+ ++.++ . ........ .
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~---~~l-~~~~~---------------~-g~~~~~~~-~ 61 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR---PSL-SKAVL---------------D-GSLERPPI-L 61 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS---GGG-GTHHH---------------H-TSSSSCCB-S
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCC---ccc-cHHHh---------------C-CCCCHHHh-c
Confidence 5899999999999999999999987 999999 4332110 000 00000 0 00000000 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEec-eEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
. ..+.+++.+++++.+ .+..++ .+.|.+.+++++.||+||+|||+.|+.|+.++.+...
T Consensus 62 ~------------------~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~ 123 (410)
T 3ef6_A 62 A------------------EADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPG 123 (410)
T ss_dssp S------------------CTTHHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTT
T ss_pred C------------------CHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccc
Confidence 0 011234579999999 555544 5688888888999999999999999988776655455
Q ss_pred Eec---ccccccCC---CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008714 256 VIT---SDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 256 v~t---~~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~ 328 (556)
+++ .+++..+. ..+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+.+.+.+++ .||++
T Consensus 124 v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~-~GV~i 202 (410)
T 3ef6_A 124 VVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTE-LGVQV 202 (410)
T ss_dssp EECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHH-HTCEE
T ss_pred eEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHH-CCCEE
Confidence 553 33333322 34799999999999999999999999999999999999876 899999999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t 408 (556)
++++.+++++.+ ++...+++.+| +++++|.||+|+|++||++++ +..++..++| |.||+++| |
T Consensus 203 ~~~~~v~~i~~~--~~~~~v~~~dg------~~i~aD~Vv~a~G~~p~~~l~--~~~gl~~~~g-i~vd~~~~------t 265 (410)
T 3ef6_A 203 ELGTGVVGFSGE--GQLEQVMASDG------RSFVADSALICVGAEPADQLA--RQAGLACDRG-VIVDHCGA------T 265 (410)
T ss_dssp ECSCCEEEEECS--SSCCEEEETTS------CEEECSEEEECSCEEECCHHH--HHTTCCBSSS-EECCTTSB------C
T ss_pred EeCCEEEEEecc--CcEEEEEECCC------CEEEcCEEEEeeCCeecHHHH--HhCCCccCCe-EEEccCee------E
Confidence 999999999874 34456888887 689999999999999998754 5666666655 99999999 7
Q ss_pred cCCCEEEecccCCCC---------CcHHHHHHHHHHHHHHHhCCCccCCCCCccEEE--ecccceeEecCCHHHHHHhhh
Q 008714 409 LVPHLYCIGDANGKM---------MLAHAASAQGISVVEQVTGRDHVLNHLSIPAAC--FTHPEISMVGLTEPQAREKAE 477 (556)
Q Consensus 409 ~~~~Vya~GD~~~~~---------~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~--~~~~~i~~vG~te~~a~~~~~ 477 (556)
+.|+|||+|||+..+ .+++.|..||++||+||+|+.. +|..+|+.+ +.+..+.++|+++..
T Consensus 266 ~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~------ 337 (410)
T 3ef6_A 266 LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNV--SAPQLPVSWTEIAGHRMQMAGDIEGP------ 337 (410)
T ss_dssp SSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCCC--CCCBCCEEEEEETTEEEEEESCSSSS------
T ss_pred CCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCCC--CCCCCCeeEEEECCceEEEEcCCCCC------
Confidence 899999999998643 3489999999999999999864 455677643 345688899987531
Q ss_pred hcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 478 KEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
+ ++ +.. .. .+...|.+++++. ++++|++++|...
T Consensus 338 --~-~~-~~~----~~------~~~~~~~~~~~~~---~~l~g~~~~~~~~ 371 (410)
T 3ef6_A 338 --G-DF-VSR----GM------PGSGAALLFRLQE---RRIQAVVAVDAPR 371 (410)
T ss_dssp --S-EE-EEE----SC------TTSSSEEEEEEET---TEEEEEEEESCHH
T ss_pred --C-EE-EEE----ee------CCCCeEEEEEEEC---CEEEEEEEECChH
Confidence 1 11 111 00 1223477777754 6999999999865
No 52
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.4e-36 Score=306.96 Aligned_cols=291 Identities=22% Similarity=0.263 Sum_probs=218.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.++||+|||||++|+++|..|++.|++|+|||+..+||.|.+..++... .+++ ...+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~--------------------~~~~---~~~~ 63 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENF--------------------PGFP---EPIA 63 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCS--------------------TTCS---SCBC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccC--------------------CCCC---CCCC
Confidence 4589999999999999999999999999999998899998765432210 0110 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec-----C--CEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-----P--QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~-----~--~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
. ..+..++...+++.|++++.+.+..++ . +.|.+.++.++.||+||+|||+.|..|+.++.+
T Consensus 64 ~-----------~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~ 132 (325)
T 2q7v_A 64 G-----------MELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGED 132 (325)
T ss_dssp H-----------HHHHHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTT
T ss_pred H-----------HHHHHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChh
Confidence 2 223344555667789999887665332 2 466666778899999999999998877655433
Q ss_pred ---CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEE
Q 008714 253 ---GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 253 ---~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
+..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++.+ ..+.+++ .||+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~---~~~l~~~-~gv~i~ 206 (325)
T 2q7v_A 133 NFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKVA---QARAFAN-PKMKFI 206 (325)
T ss_dssp TTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHHH---HHHHHTC-TTEEEE
T ss_pred hccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chHH---HHHHHhc-CCceEe
Confidence 344555544444445679999999999999999999999999999999887643 4433 2233333 799999
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCC
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t 408 (556)
+++.++++..+ ++...+++.+.. +++..++++|.||+|+|++||++++. .. +.. ++|+|.||+++| |
T Consensus 207 ~~~~v~~i~~~--~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~--~~-~~~~~~g~i~vd~~~~------t 274 (325)
T 2q7v_A 207 WDTAVEEIQGA--DSVSGVKLRNLK-TGEVSELATDGVFIFIGHVPNTAFVK--DT-VSLRDDGYVDVRDEIY------T 274 (325)
T ss_dssp CSEEEEEEEES--SSEEEEEEEETT-TCCEEEEECSEEEECSCEEESCGGGT--TT-SCBCTTSCBCCBTTTB------C
T ss_pred cCCceEEEccC--CcEEEEEEEECC-CCcEEEEEcCEEEEccCCCCChHHHh--hh-cccCCCccEecCCCCc------c
Confidence 99999999873 444456665310 11224789999999999999998663 33 444 678999999999 7
Q ss_pred cCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q 008714 409 LVPHLYCIGDANGK-MMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 409 ~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~g 442 (556)
+.|||||+|||++. +++++.|..||++||.||..
T Consensus 275 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 275 NIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987 68999999999999999974
No 53
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=1.8e-36 Score=304.28 Aligned_cols=291 Identities=21% Similarity=0.226 Sum_probs=223.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEE-ecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAI-IEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~v-iEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||+||+++|..|++.|++|+| |||+.+||.|.+..+++... +++ ...
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~--------------------~~~---~~~ 59 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYP--------------------GVA---QVM 59 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCST--------------------TCC---SCB
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCC--------------------CCC---CCC
Confidence 358999999999999999999999999999 99988999987655432110 000 011
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe-c----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC-
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-G----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD- 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~- 252 (556)
.. .++..++...+++.+++++.+.+... + .+.+.+..+.++.||+||+|||+.|..|+.++..
T Consensus 60 ~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~~ 128 (315)
T 3r9u_A 60 DG-----------ISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDE 128 (315)
T ss_dssp CH-----------HHHHHHHHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTTT
T ss_pred CH-----------HHHHHHHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChhh
Confidence 22 33445555666778999998876655 2 3443143222899999999999998877655543
Q ss_pred --CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEc
Q 008714 253 --GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 253 --~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
+..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++++ +.+.+++ .||++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~-~gv~~~~ 202 (315)
T 3r9u_A 129 FFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA--APST---VEKVKKN-EKIELIT 202 (315)
T ss_dssp TBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS--CHHH---HHHHHHC-TTEEEEC
T ss_pred cCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC--CHHH---HHHHHhc-CCeEEEe
Confidence 356777666666666789999999999999999999999999999999887632 4443 3444455 8999999
Q ss_pred CceEEEEEecCCCCeEEEEEe--cCCCCCCCceEecCEEEEeeCCCCCCCCCCC-cccc-ccc-CCCceeeCCCCccccC
Q 008714 331 GVFATKITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALIATGRAPFTNGLGL-ENIN-VVT-QRGFVPVDERMRVIDA 405 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l-~~~~-~~~-~~G~i~vd~~l~~~~~ 405 (556)
++.+.++..+ +++...+++. +| +..++++|.|++++|++|+...+.. +..+ +.. ++|+|.||+++|
T Consensus 203 ~~~v~~i~~~-~~~~~~v~~~~~~g----~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~---- 273 (315)
T 3r9u_A 203 SASVDEVYGD-KMGVAGVKVKLKDG----SIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQ---- 273 (315)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECTTS----CEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCB----
T ss_pred CcEEEEEEcC-CCcEEEEEEEcCCC----CeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcc----
Confidence 9999999875 3344456665 43 2247999999999999999987654 4454 665 679999999999
Q ss_pred CCCcCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHh
Q 008714 406 NGNLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~-~~~~~~~A~~qg~~aa~~i~ 441 (556)
|+.|||||+|||++ .++.+..|..||+.||.||.
T Consensus 274 --t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 274 --TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp --CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred --cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence 78999999999985 57899999999999999986
No 54
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=2.3e-36 Score=303.26 Aligned_cols=292 Identities=20% Similarity=0.195 Sum_probs=217.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+||+|||||++|+++|..|++.|+ +|+|||++.+||.|.+..++... .+++ ...+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~--------------------~~~~---~~~~~ 58 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENY--------------------PGVK---EVVSG 58 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCS--------------------TTCC---SCBCH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccC--------------------CCCc---ccCCH
Confidence 799999999999999999999999 99999998899998765433210 0000 01222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--C--CEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC---C
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--P--QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD---G 253 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~--~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~---~ 253 (556)
..+..++...+++.|++++...+..++ . +.|.+.++.++.||+||+|||+.|..|+.++.. +
T Consensus 59 -----------~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~ 127 (311)
T 2q0l_A 59 -----------LDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWG 127 (311)
T ss_dssp -----------HHHHHHHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBT
T ss_pred -----------HHHHHHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccC
Confidence 233344445566679999886655332 2 356666777899999999999998877655432 3
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+++. +++++ .+.+.++.||++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~----~~~l~~~~gv~v~~~~~ 201 (311)
T 2q0l_A 128 KGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPIT----LEHAKNNDKIEFLTPYV 201 (311)
T ss_dssp TTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHHH----HHHHHTCTTEEEETTEE
T ss_pred CcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHHH----HHHHhhCCCeEEEeCCE
Confidence 4466554444444567999999999999999999999999999999988763 35543 33333337999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCc--cccccc-CCCceeeCCCCccccCCCCcC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLE--NINVVT-QRGFVPVDERMRVIDANGNLV 410 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~--~~~~~~-~~G~i~vd~~l~~~~~~~t~~ 410 (556)
++++..++ ++...+++.+.. +++..++++|.|++|+|++||++++... ..++.. ++|+|.||+++| |+.
T Consensus 202 v~~i~~~~-~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~------t~~ 273 (311)
T 2q0l_A 202 VEEIKGDA-SGVSSLSIKNTA-TNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMK------TNV 273 (311)
T ss_dssp EEEEEEET-TEEEEEEEEETT-TCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCB------CSS
T ss_pred EEEEECCC-CcEeEEEEEecC-CCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccc------cCC
Confidence 99998752 333356665210 1122478999999999999998866321 113554 679999999999 789
Q ss_pred CCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 411 PHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 411 ~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
|||||+|||++. +++++.|..||++||.||.
T Consensus 274 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 305 (311)
T 2q0l_A 274 QGLFAAGDIRIFAPKQVVCAASDGATAALSVI 305 (311)
T ss_dssp TTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence 999999999986 7899999999999999986
No 55
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=1.1e-36 Score=306.90 Aligned_cols=289 Identities=22% Similarity=0.284 Sum_probs=220.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
+++||+|||||++|+++|..|++.|++|+|||+. +||.|.+.+.+... .++ +...
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~gg~~~~~~~~~~~--------------------~~~----~~~~ 68 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-PGGQLTEAGIVDDY--------------------LGL----IEIQ 68 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-TTGGGGGCCEECCS--------------------TTS----TTEE
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCeeccccccccc--------------------CCC----CCCC
Confidence 3589999999999999999999999999999999 99998753321100 000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC---
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD--- 252 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~--- 252 (556)
. .++..++...+++.|++++...+..++ .+.+.+.++.++.||+||+|||+.|..|+.++.+
T Consensus 69 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~ 137 (323)
T 3f8d_A 69 A-----------SDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFA 137 (323)
T ss_dssp H-----------HHHHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTB
T ss_pred H-----------HHHHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhc
Confidence 1 334455566667789998886655432 3467777778999999999999998877655543
Q ss_pred CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCc
Q 008714 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 253 ~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
+..++...........+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ ++++ +.+.+++ .||++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~-~gv~~~~~~ 211 (323)
T 3f8d_A 138 GRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKK-PNVEFVLNS 211 (323)
T ss_dssp TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTC-TTEEEECSE
T ss_pred CCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhC-CCcEEEeCC
Confidence 355655544444455689999999999999999999999999999999998876 4432 3334433 699999999
Q ss_pred eEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCC
Q 008714 333 FATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
.+++++.+ ++...+++.+.. .++..++++|.|++++|++|+++++ +..++.. ++|+|.||++++ |+.|
T Consensus 212 ~v~~i~~~--~~~~~v~~~~~~-~g~~~~~~~D~vv~a~G~~p~~~~~--~~~g~~~~~~g~i~vd~~~~------t~~~ 280 (323)
T 3f8d_A 212 VVKEIKGD--KVVKQVVVENLK-TGEIKELNVNGVFIEIGFDPPTDFA--KSNGIETDTNGYIKVDEWMR------TSVP 280 (323)
T ss_dssp EEEEEEES--SSEEEEEEEETT-TCCEEEEECSEEEECCCEECCHHHH--HHTTCCBCTTSSBCCCTTCB------CSST
T ss_pred EEEEEecc--CceeEEEEEECC-CCceEEEEcCEEEEEECCCCChhHH--hhcCeeecCCCcEecCCCce------ecCC
Confidence 99999874 455567777621 1122479999999999999997654 5556664 789999999999 7899
Q ss_pred CEEEecccCCC---CCcHHHHHHHHHHHHHHHh
Q 008714 412 HLYCIGDANGK---MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 412 ~Vya~GD~~~~---~~~~~~A~~qg~~aa~~i~ 441 (556)
||||+|||++. ++++..|..||++||.||+
T Consensus 281 ~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 281 GVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp TEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence 99999999985 7899999999999999986
No 56
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=4.5e-36 Score=302.32 Aligned_cols=298 Identities=19% Similarity=0.238 Sum_probs=222.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+||+|||||++|+++|..|++.|++|+|||+..+||.|.....+.. + .+++ ..+..
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~------------------~--~~~~---~~~~~ 61 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVEN------------------W--PGDP---NDLTG 61 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCC------------------S--TTCC---SSCBH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhh------------------C--CCCC---CCCCH
Confidence 48999999999999999999999999999999888998764322110 0 0000 01122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC---CC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV---DG 253 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~---~~ 253 (556)
..+..++...+++.+++++.+.+...+ .+.+ +.++.++.||+||+|||+.|..|+.++. .+
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~ 129 (320)
T 1trb_A 62 -----------PLLMERMHEHATKFETEIIFDHINKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYLGLPSEEAFKG 129 (320)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEE-EESSCEEEEEEEEECCCEEECCCCCHHHHHTBT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEEeeeeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCCCCCCChHHhCC
Confidence 223344445566789999998866543 2334 4566789999999999999887765442 23
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ++.+.+.+.+.+++ .||++++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~~~l~~~l~~-~gv~i~~~~~ 206 (320)
T 1trb_A 130 RGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--EKILIKRLMDKVEN-GNIILHTNRT 206 (320)
T ss_dssp TTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC--CHHHHHHHHHHHHT-SSEEEECSCE
T ss_pred ceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc--CHHHHHHHHHhccc-CCeEEEcCce
Confidence 44555544444445689999999999999999999999999999999887654 77788888888877 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCE
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
+++++.+ +++...+++.+...+++..++++|.||+|+|++|+++++. .++..++|+|.||++++... ..|+.|||
T Consensus 207 v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~---~~l~~~~G~i~vd~~~~~~~-~~t~~~~v 281 (320)
T 1trb_A 207 LEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE---GQLELENGYIKVQSGIHGNA-TQTSIPGV 281 (320)
T ss_dssp EEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT---TTSCEETTEECCCCSSSSCT-TBCSSTTE
T ss_pred eEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc---ccccccCceEEECCCccccc-ccCCCCCE
Confidence 9999875 3344457776521101235799999999999999998664 23433489999999972100 01799999
Q ss_pred EEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 414 YCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 414 ya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
||+|||++. +..+..|..||+.||.+|.
T Consensus 282 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 282 FAAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp EECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred EEcccccCCcchhhhhhhccHHHHHHHHH
Confidence 999999987 5789999999999999986
No 57
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=5e-36 Score=300.67 Aligned_cols=288 Identities=21% Similarity=0.276 Sum_probs=216.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
++||+|||||++|+++|..|++.|++|+|||+ .+||.|.....++.. .+ .+..+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~-~~gG~~~~~~~~~~~--------------------~~----~~~~~~ 55 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE-RFGGQILDTVDIENY--------------------IS----VPKTEG 55 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS-STTGGGGGCCEECCB--------------------TT----BSSEEH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC-CCCceeccccccccc--------------------cC----cCCCCH
Confidence 37999999999999999999999999999986 578888643322210 00 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEec-eEEEec-------CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTILG-------PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~-------~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
..+..++...+++.+++++.+ .+..++ .+.|.+.++.++.||+||+|||+.|..|+.++.+
T Consensus 56 -----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~ 124 (310)
T 1fl2_A 56 -----------QKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGED 124 (310)
T ss_dssp -----------HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTT
T ss_pred -----------HHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChh
Confidence 233445555667789999998 555442 3567777777899999999999988776654432
Q ss_pred ---CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEE
Q 008714 253 ---GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 253 ---~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
+..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+++. +++. +.+.+.+..||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~l~~~~gv~v~ 198 (310)
T 1fl2_A 125 QYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQV----LQDKLRSLKNVDII 198 (310)
T ss_dssp TTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCHH----HHHHHHTCTTEEEE
T ss_pred hcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccHH----HHHHHhhCCCeEEe
Confidence 34466555444444568999999999999999999999999999999998763 4543 34445443699999
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCC
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t 408 (556)
+++.++++..+ +++...+++.++. .++..++++|.|++|+|++||++++. .. +.. ++|+|.||+++| |
T Consensus 199 ~~~~v~~i~~~-~~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~--~~-l~~~~~g~i~vd~~~~------t 267 (310)
T 1fl2_A 199 LNAQTTEVKGD-GSKVVGLEYRDRV-SGDIHNIELAGIFVQIGLLPNTNWLE--GA-VERNRMGEIIIDAKCE------T 267 (310)
T ss_dssp SSEEEEEEEES-SSSEEEEEEEETT-TCCEEEEECSEEEECSCEEESCGGGT--TT-SCBCTTSCBCCCTTCB------C
T ss_pred cCCceEEEEcC-CCcEEEEEEEECC-CCcEEEEEcCEEEEeeCCccCchHHh--cc-ccccCCCcEEcCCCCc------c
Confidence 99999999875 3444467776531 12235789999999999999987663 22 444 678999999999 7
Q ss_pred cCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q 008714 409 LVPHLYCIGDANGKM-MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 409 ~~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i~ 441 (556)
+.|+|||+|||++.+ +.+..|+.||+.||.||.
T Consensus 268 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 301 (310)
T 1fl2_A 268 NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 301 (310)
T ss_dssp SSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence 999999999999875 689999999999999986
No 58
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=6.4e-36 Score=301.24 Aligned_cols=290 Identities=22% Similarity=0.277 Sum_probs=215.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++||+|||||++|+++|..|++.|++|+|||+..+||.|.+..++... . ++ ...
T Consensus 14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~------------------~--~~----~~~ 69 (319)
T 3cty_A 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENY------------------L--GF----KSI 69 (319)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCB------------------T--TB----SSB
T ss_pred cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhc------------------C--CC----ccc
Confidence 34689999999999999999999999999999998889988765432210 0 00 011
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CC--EEEEccceEEEeCeEEEeCCCCCCCCCCCCCC--
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQ--KVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD-- 252 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~--~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~-- 252 (556)
+. ..+...+...+++.|++++.+.+...+ .. .|.+ ++.++.||+||+|||+.|..|+.++.+
T Consensus 70 ~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~ 137 (319)
T 3cty_A 70 VG-----------SELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEY 137 (319)
T ss_dssp CH-----------HHHHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTT
T ss_pred CH-----------HHHHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHh
Confidence 22 123334445566679998886655432 22 4555 456899999999999998877655433
Q ss_pred -CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 253 -GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 253 -~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
+..++...........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++.+ .+.+.+ .||+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~~l----~~~l~~-~gv~i~~~ 210 (319)
T 3cty_A 138 FGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--ENAY----VQEIKK-RNIPYIMN 210 (319)
T ss_dssp BTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CHHH----HHHHHH-TTCCEECS
T ss_pred CCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CHHH----HHHHhc-CCcEEEcC
Confidence 234544443333345579999999999999999999999999999999887643 4443 334444 79999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 410 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~ 410 (556)
+.++++..+ +++...+.+.+.. +++..++++|.||+|+|++||++++ +..++.. ++|+|.||+++| |+.
T Consensus 211 ~~v~~i~~~-~~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~------t~~ 280 (319)
T 3cty_A 211 AQVTEIVGD-GKKVTGVKYKDRT-TGEEKLIETDGVFIYVGLIPQTSFL--KDSGVKLDERGYIVVDSRQR------TSV 280 (319)
T ss_dssp EEEEEEEES-SSSEEEEEEEETT-TCCEEEECCSEEEECCCEEECCGGG--TTSCCCBCTTSCBCCCTTCB------CSS
T ss_pred CeEEEEecC-CceEEEEEEEEcC-CCceEEEecCEEEEeeCCccChHHH--hhccccccCCccEeCCCCCc------cCC
Confidence 999999875 3434456665210 1122479999999999999999866 3556655 679999999999 789
Q ss_pred CCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 411 PHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 411 ~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
|+|||+|||++. +++++.|..||++||.||.
T Consensus 281 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 312 (319)
T 3cty_A 281 PGVYAAGDVTSGNFAQIASAVGDGCKAALSLY 312 (319)
T ss_dssp TTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999987 5899999999999999986
No 59
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-36 Score=303.90 Aligned_cols=292 Identities=21% Similarity=0.225 Sum_probs=218.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||.|.+. +|++.+.... + .+.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~~---------------~----~~~~ 62 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL--YPEKYIYDVA---------------G----FPKV 62 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT--CTTSEECCST---------------T----CSSE
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc--CCCceeeccC---------------C----CCCC
Confidence 358999999999999999999999999999999 7899988643 3433221100 0 0112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEec----CCEEEEccceEEEeCeEEEeCCCC---CCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILG----PQKVKFGTDNIVTAKDIIIATGSV---PFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~----~~~v~~~~~~~~~~d~lViAtG~~---p~~p~~~~ 250 (556)
+. .++..++.+.+++.+++++.+. +..++ .+.|.+.++.++.||+||+|||+. |..|+.++
T Consensus 63 ~~-----------~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g 131 (335)
T 2zbw_A 63 YA-----------KDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPG 131 (335)
T ss_dssp EH-----------HHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTT
T ss_pred CH-----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCC
Confidence 22 2233344455666788887664 33222 245666667789999999999994 65555443
Q ss_pred C---CCCeEecc-cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCce
Q 008714 251 V---DGKTVITS-DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 251 ~---~~~~v~t~-~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV 326 (556)
. .+..++.. .+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .++..+.+.+.+++ .||
T Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~-~gv 206 (335)
T 2zbw_A 132 EREFEGRGVYYAVKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKAHEE-GRL 206 (335)
T ss_dssp TTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHHHHT-TSS
T ss_pred hhhccCcEEEEecCchh--hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhcccc-CCe
Confidence 2 22234322 1111 23579999999999999999999999999999999988766 46777888888877 899
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEe---cCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccc
Q 008714 327 DYHTGVFATKITPAKDGKPVTIELI---DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVI 403 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~~---~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~ 403 (556)
+++.++.+.+++.+ ++...+++. +| +..++++|.|++|+|++|+++++ +..++..++|+|.||+++|
T Consensus 207 ~v~~~~~v~~i~~~--~~~~~v~~~~~~~g----~~~~i~~D~vi~a~G~~p~~~~l--~~~~~~~~~g~i~vd~~~~-- 276 (335)
T 2zbw_A 207 EVLTPYELRRVEGD--ERVRWAVVFHNQTQ----EELALEVDAVLILAGYITKLGPL--ANWGLALEKNKIKVDTTMA-- 276 (335)
T ss_dssp EEETTEEEEEEEES--SSEEEEEEEETTTC----CEEEEECSEEEECCCEEEECGGG--GGSCCCEETTEEECCTTCB--
T ss_pred EEecCCcceeEccC--CCeeEEEEEECCCC----ceEEEecCEEEEeecCCCCchHh--hhcceeccCCeeeeCCCCC--
Confidence 99999999999873 444456665 33 22579999999999999998755 5566666689999999999
Q ss_pred cCCCCcCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHhC
Q 008714 404 DANGNLVPHLYCIGDANG---KMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 404 ~~~~t~~~~Vya~GD~~~---~~~~~~~A~~qg~~aa~~i~g 442 (556)
|+.|||||+|||+. .+++++.|..||+++|+||.+
T Consensus 277 ----t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 277 ----TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp ----CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence 78999999999984 467999999999999999974
No 60
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.5e-35 Score=295.59 Aligned_cols=291 Identities=21% Similarity=0.279 Sum_probs=215.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+||+|||||++|+++|..|++.|++|+|||+..+||.|.....+.. +. +++ ..+
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~------------------~~--~~~---~~~ 68 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVEN------------------YP--GFR---NGI 68 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCC------------------ST--TCT---TCB
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhh------------------cC--CCC---CCC
Confidence 3458999999999999999999999999999999889998864322110 00 000 012
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec---CCEE-EEccceEEEeCeEEEeCCCCCCCCCCCCC---
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG---PQKV-KFGTDNIVTAKDIIIATGSVPFVPKGIEV--- 251 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~---~~~v-~~~~~~~~~~d~lViAtG~~p~~p~~~~~--- 251 (556)
+. .++..++...+++.+++++.+.+..++ .+.| .+.++.++.||+||+|||+.|..|+.++.
T Consensus 69 ~~-----------~~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~ 137 (335)
T 2a87_A 69 TG-----------PELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQEL 137 (335)
T ss_dssp CH-----------HHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHT
T ss_pred CH-----------HHHHHHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhc
Confidence 22 223334445566679999988765443 3567 67777789999999999999887765442
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
.+..+++..........+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++ .||+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~---~~~~~~~-~gV~v~~~ 211 (335)
T 2a87_A 138 LGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIM---LDRARNN-DKIRFLTN 211 (335)
T ss_dssp BTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTH---HHHHHHC-TTEEEECS
T ss_pred cCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHH---HHHHhcc-CCcEEEeC
Confidence 2344655544444345689999999999999999999999999999999887653 2222 2234455 89999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCC-CccccCCCCc
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDER-MRVIDANGNL 409 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~-l~~~~~~~t~ 409 (556)
+.+++++.++ +...+.+.+.. +++.+++++|.|++|+|++||++++. .++.. ++|+|.||++ ++ |+
T Consensus 212 ~~v~~i~~~~--~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~~~---~~l~~~~~G~i~vd~~~~~------t~ 279 (335)
T 2a87_A 212 HTVVAVDGDT--TVTGLRVRDTN-TGAETTLPVTGVFVAIGHEPRSGLVR---EAIDVDPDGYVLVQGRTTS------TS 279 (335)
T ss_dssp EEEEEEECSS--SCCEEEEEEET-TSCCEEECCSCEEECSCEEECCTTTB---TTBCBCTTSCBCCSTTSSB------CS
T ss_pred ceeEEEecCC--cEeEEEEEEcC-CCceEEeecCEEEEccCCccChhHhh---cccccCCCccEEeCCCCCc------cC
Confidence 9999998653 33345554311 11235799999999999999998763 34554 6899999997 45 79
Q ss_pred CCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 410 VPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 410 ~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
.|||||+|||++. ++.+..|..||+.||.||.
T Consensus 280 ~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 280 LPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp STTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence 9999999999986 5789999999999999986
No 61
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=5.4e-36 Score=299.78 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=204.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccc-cCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVN-RGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~-~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
++.|||+||||||||++||.+|+++|++|+|||++.+||.+.. ...++. ...
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~---------------------------~~~ 56 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFIT---------------------------RDG 56 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTT---------------------------CTT
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccC---------------------------CCC
Confidence 3569999999999999999999999999999999888886531 111110 001
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe-----cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL-----GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~-----~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
..+..+ .....+.+.+ .++.++.+..... ..+.+.+.+++++.||+||||||++|+.|++++.
T Consensus 57 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~ 125 (304)
T 4fk1_A 57 IKPEEF-----------KEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNV 125 (304)
T ss_dssp BCHHHH-----------HHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTH
T ss_pred CCHHHH-----------HHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCc
Confidence 222221 1112222333 3567777665533 2356778888899999999999999988876653
Q ss_pred ---CCCeEecccccccCCCCCCeEEEEcCch-hHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 252 ---DGKTVITSDHALKLEFVPDWIAIVGSGY-IGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 252 ---~~~~v~t~~~~~~~~~~~~~v~VvG~G~-~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
.+..++++.........+++++|||+|. .++|+|..+.+.+.+|+++.+.+.+. + .+.+.+++ .|+.
T Consensus 126 ~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~----~----~~~~~l~~-~g~~ 196 (304)
T 4fk1_A 126 REYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS----Q----TIMDELSN-KNIP 196 (304)
T ss_dssp HHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC----H----HHHHHHHT-TTCC
T ss_pred cccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch----h----hhhhhhhc-ccee
Confidence 3556777766666666778888888775 57899999999999999998876542 2 34455666 7899
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDAN 406 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~ 406 (556)
++.+. ++.+..+ ++....+++.+| +++++|.+++++|.+|++.++ +..+++. ++|+|.||+++|
T Consensus 197 ~~~~~-v~~~~~~-~~~~~~v~~~~g------~~i~~~~~vi~~g~~~~~~~~--~~~g~~~~~~G~I~vd~~~~----- 261 (304)
T 4fk1_A 197 VITES-IRTLQGE-GGYLKKVEFHSG------LRIERAGGFIVPTFFRPNQFI--EQLGCELQSNGTFVIDDFGR----- 261 (304)
T ss_dssp EECSC-EEEEESG-GGCCCEEEETTS------CEECCCEEEECCEEECSSCHH--HHTTCCCCTTSSSCSSTTCB-----
T ss_pred Eeeee-EEEeecC-CCeeeeeecccc------ceeeecceeeeeccccCChhh--hhcCeEECCCCCEEECcCCc-----
Confidence 88764 6677654 445556788777 688899888887777766543 5667766 789999999999
Q ss_pred CCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 407 GNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 407 ~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
|++|||||+|||++. +.++..|..||++||..|.
T Consensus 262 -Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 262 -TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp -CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred -cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 899999999999864 5678999999999998774
No 62
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6.1e-36 Score=297.79 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=209.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCcccccc-CCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNR-GCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~-g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
++||+|||||++|+++|..|++.|++|+|||+....+.+... ..+|. ....+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~---------------------------~~~~~ 54 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLG---------------------------QDGKA 54 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTT---------------------------CTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcC---------------------------CCCCC
Confidence 489999999999999999999999999999995443332210 00000 00122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC---
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV--- 251 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~--- 251 (556)
. .++..++.+.+.+. +++++.+.+..++ .+.|.+.++.++.||+||+|||+.|..|+.++.
T Consensus 55 ~-----------~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~ 123 (297)
T 3fbs_A 55 P-----------GEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRER 123 (297)
T ss_dssp H-----------HHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGG
T ss_pred H-----------HHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhh
Confidence 2 23334444555555 7898888776543 247777788889999999999999887765543
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
.+..++++.........+++++|||+|++|+|+|..|.+.| +|+++.+.+. .+++. +.+.+++ .||+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~~~~----~~~~l~~-~gv~i~~- 193 (297)
T 3fbs_A 124 WGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EPDAD----QHALLAA-RGVRVET- 193 (297)
T ss_dssp BTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CCCHH----HHHHHHH-TTCEEEC-
T ss_pred cCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CCCHH----HHHHHHH-CCcEEEc-
Confidence 34566766655555567899999999999999999999999 9999988765 33443 4556665 8999995
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc---CCC-ceeeCCCCccccCCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT---QRG-FVPVDERMRVIDANG 407 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~---~~G-~i~vd~~l~~~~~~~ 407 (556)
+.+++++.+ + .+++.+| +++++|.|++++|++|+.+++ +..++.. ++| +|.||++++
T Consensus 194 ~~v~~i~~~--~---~v~~~~g------~~~~~D~vi~a~G~~p~~~~~--~~~g~~~~~~~~G~~i~vd~~~~------ 254 (297)
T 3fbs_A 194 TRIREIAGH--A---DVVLADG------RSIALAGLFTQPKLRITVDWI--EKLGCAVEEGPMGSTIVTDPMKQ------ 254 (297)
T ss_dssp SCEEEEETT--E---EEEETTS------CEEEESEEEECCEEECCCSCH--HHHTCCEEEETTEEEECCCTTCB------
T ss_pred ceeeeeecC--C---eEEeCCC------CEEEEEEEEEccCcccCchhH--HhcCCccccCCCCceEEeCCCCc------
Confidence 889998753 1 5777776 689999999999999998754 5555554 356 899999999
Q ss_pred CcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 408 NLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
|+.|||||+|||++.+++++.|..||++||.||.
T Consensus 255 t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 255 TTARGIFACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp CSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 7999999999999989999999999999999986
No 63
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=2.3e-35 Score=302.35 Aligned_cols=293 Identities=22% Similarity=0.252 Sum_probs=216.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||.|.+. .|++.+... .++ +.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~---------------~~~----~~~ 71 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL--YPEKHIYDV---------------AGF----PEV 71 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT--CTTSEECCS---------------TTC----SSE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc--CCCcccccC---------------CCC----CCC
Confidence 458999999999999999999999999999999 7889988643 333221100 000 111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEec-----CCEEEEccceEEEeCeEEEeCCCC---CCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTILG-----PQKVKFGTDNIVTAKDIIIATGSV---PFVPKGI 249 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~-----~~~v~~~~~~~~~~d~lViAtG~~---p~~p~~~ 249 (556)
+. ..+..++...++..+++++.+. +..++ .+.|.+.++.++.||+||+|||+. |..|+.+
T Consensus 72 ~~-----------~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~ 140 (360)
T 3ab1_A 72 PA-----------IDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQL 140 (360)
T ss_dssp EH-----------HHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGG
T ss_pred CH-----------HHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCC
Confidence 22 2333445556666789888764 33221 246777777789999999999994 5544443
Q ss_pred C----CCCCeEecc-cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCC
Q 008714 250 E----VDGKTVITS-DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR 324 (556)
Q Consensus 250 ~----~~~~~v~t~-~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~ 324 (556)
+ +.+..++.+ .+.. ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++.+.+.+.+++ .
T Consensus 141 g~~~~~~~~~v~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~-~ 215 (360)
T 3ab1_A 141 GNIDHLTGSSVYYAVKSVE--DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEVERARAN-G 215 (360)
T ss_dssp CCCTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSSHHHHHH-T
T ss_pred CchhhCcCceEEEecCCHH--HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhc-C
Confidence 3 223334332 1111 235799999999999999999999999999999999887663 4566667777766 7
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEe--cCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCcc
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRV 402 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~ 402 (556)
||++++++.+++++.+ +++...+.+. +| +..++++|.||+|+|++|+.+++ +..++..++|+|.||+++|
T Consensus 216 gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g----~~~~i~~D~vi~a~G~~p~~~~l--~~~~~~~~~g~i~vd~~~~- 287 (360)
T 3ab1_A 216 TIDVYLETEVASIEES-NGVLTRVHLRSSDG----SKWTVEADRLLILIGFKSNLGPL--ARWDLELYENALVVDSHMK- 287 (360)
T ss_dssp SEEEESSEEEEEEEEE-TTEEEEEEEEETTC----CEEEEECSEEEECCCBCCSCGGG--GGSSCCEETTEEECCTTSB-
T ss_pred ceEEEcCcCHHHhccC-CCceEEEEEEecCC----CeEEEeCCEEEECCCCCCCHHHH--HhhccccccCeeeecCCCc-
Confidence 9999999999999875 3443355554 33 23579999999999999998765 4556655689999999999
Q ss_pred ccCCCCcCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHhC
Q 008714 403 IDANGNLVPHLYCIGDANG---KMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~---~~~~~~~A~~qg~~aa~~i~g 442 (556)
|+.|||||+|||+. .++++..|..||++||+||.+
T Consensus 288 -----t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 288 -----TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp -----CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 78999999999984 467999999999999999974
No 64
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=5.2e-35 Score=296.58 Aligned_cols=293 Identities=19% Similarity=0.239 Sum_probs=216.2
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-----cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-----VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-----~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
...++||+|||||++|+++|..|++.|++|+|||+. .+||.|.....+.. + .+++
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~------------------~--~~~~ 78 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIEN------------------F--PGFP 78 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECC------------------S--TTCT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcc------------------c--CCCc
Confidence 345689999999999999999999999999999993 47887764321100 0 0000
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCE--EEE---ccceEEEeCeEEEeCCCCCCC
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQK--VKF---GTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~--v~~---~~~~~~~~d~lViAtG~~p~~ 245 (556)
. .... .++..++...+++.|++++.+.+...+ .+. +.+ .++.++.||+||+|||+.|..
T Consensus 79 ~---~~~~-----------~~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~ 144 (338)
T 3itj_A 79 D---GLTG-----------SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKR 144 (338)
T ss_dssp T---CEEH-----------HHHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred c---cCCH-----------HHHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence 0 0111 344455666777789999998855443 333 333 356789999999999999887
Q ss_pred CCCCCC---CCCeEecccccccC--CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 008714 246 PKGIEV---DGKTVITSDHALKL--EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 246 p~~~~~---~~~~v~t~~~~~~~--~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l 320 (556)
|+.++. .+..+++....... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ . +.+.+.+
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~--~----~~~~~~l 218 (338)
T 3itj_A 145 MHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA--S----TIMQKRA 218 (338)
T ss_dssp CCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--C----HHHHHHH
T ss_pred CCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC--C----HHHHHHH
Confidence 765543 23455555544433 45679999999999999999999999999999999988765 2 2334444
Q ss_pred hCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceee-CC
Q 008714 321 INPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPV-DE 398 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~v-d~ 398 (556)
.+..||++++++.+.+++.+ ++....+++.+.. .++..++++|.||+|+|++|+..++.. ++.. ++|+|.| |+
T Consensus 219 ~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~~~~---~l~~~~~G~i~v~~~ 293 (338)
T 3itj_A 219 EKNEKIEILYNTVALEAKGD-GKLLNALRIKNTK-KNEETDLPVSGLFYAIGHTPATKIVAG---QVDTDEAGYIKTVPG 293 (338)
T ss_dssp HHCTTEEEECSEEEEEEEES-SSSEEEEEEEETT-TTEEEEEECSEEEECSCEEECCGGGBT---TBCBCTTSCBCCCTT
T ss_pred HhcCCeEEeecceeEEEEcc-cCcEEEEEEEECC-CCceEEEEeCEEEEEeCCCCChhHhhC---ceEecCCCcEEEcCc
Confidence 33259999999999999875 3444557776621 112367999999999999999986632 5655 6899985 77
Q ss_pred CCccccCCCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 399 RMRVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 399 ~l~~~~~~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
+++ |+.|||||+|||++. ++.+..|..||+.||.||.
T Consensus 294 ~~~------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 331 (338)
T 3itj_A 294 SSL------TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE 331 (338)
T ss_dssp SSB------CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccc------cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence 788 799999999999974 6889999999999999986
No 65
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=1.8e-35 Score=299.27 Aligned_cols=290 Identities=20% Similarity=0.263 Sum_probs=215.1
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
++||+|||||+||+++|..|++.|++|+|||+ +.+||.|.+ +.|...+... .++ +...
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~--~~~~~~~~~~---------------~~~----~~~~ 65 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA--LYPEKYIYDV---------------AGF----PKIR 65 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH--HCTTSEECCS---------------TTC----SSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh--cCCCceEecc---------------CCC----CCCC
Confidence 48999999999999999999999999999999 789998853 2332221100 000 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--c---CCEEEEccceEEEeCeEEEeCCC---CCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--G---PQKVKFGTDNIVTAKDIIIATGS---VPFVPKGIE 250 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~---~~~v~~~~~~~~~~d~lViAtG~---~p~~p~~~~ 250 (556)
. .++..++...+++.+++++.+. +..+ + .+.|.+.+++ +.||+||+|||+ .|..|+.++
T Consensus 66 ~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g 133 (332)
T 3lzw_A 66 A-----------QELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELEN 133 (332)
T ss_dssp H-----------HHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTT
T ss_pred H-----------HHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCC
Confidence 1 3444555666667799998654 3322 2 3467777765 999999999999 777665444
Q ss_pred C---CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 251 V---DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 251 ~---~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
. .+..++. .........+++++|||+|.+|+|+|..|.+.+.+|+++++.+++.+ +++. .+.+++ .||+
T Consensus 134 ~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~-----~~~l~~-~gv~ 205 (332)
T 3lzw_A 134 AEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEHS-----VENLHA-SKVN 205 (332)
T ss_dssp GGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHHH-----HHHHHH-SSCE
T ss_pred hhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHHH-----HHHHhc-CCeE
Confidence 3 3344444 22112223479999999999999999999999999999999988754 2222 233455 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANG 407 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~ 407 (556)
++.++.+.+++.+++ ...+++.++.. ++..++++|.|++|+|++|+++++ +..++..++|+|.||+++|
T Consensus 206 ~~~~~~v~~i~~~~~--~~~v~~~~~~~-g~~~~~~~D~vv~a~G~~p~~~~~--~~~~~~~~~g~i~vd~~~~------ 274 (332)
T 3lzw_A 206 VLTPFVPAELIGEDK--IEQLVLEEVKG-DRKEILEIDDLIVNYGFVSSLGPI--KNWGLDIEKNSIVVKSTME------ 274 (332)
T ss_dssp EETTEEEEEEECSSS--CCEEEEEETTS-CCEEEEECSEEEECCCEECCCGGG--GGSSCCEETTEEECCTTSB------
T ss_pred EEeCceeeEEecCCc--eEEEEEEecCC-CceEEEECCEEEEeeccCCCchHH--hhcCccccCCeEEeCCCCc------
Confidence 999999999987533 45677766421 223679999999999999998864 5666666889999999999
Q ss_pred CcCCCEEEecccC---CCCCcHHHHHHHHHHHHHHHhC
Q 008714 408 NLVPHLYCIGDAN---GKMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 408 t~~~~Vya~GD~~---~~~~~~~~A~~qg~~aa~~i~g 442 (556)
|+.|||||+|||+ +.++++..|..||++||+||+.
T Consensus 275 t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 275 TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 7899999999998 5688999999999999999973
No 66
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=3.4e-34 Score=307.13 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=219.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+||+||||||||+++|..|++.|++|+|||+ .+||.|.....++.. ++ .+..+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~-~~GG~~~~~~~~~~~--------------------~~----~~~~~ 265 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE-RFGGQVLDTVDIENY--------------------IS----VPKTE 265 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS-STTGGGTTCSCBCCB--------------------TT----BSSBC
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC-CCCCccccccccccc--------------------CC----CCCCC
Confidence 468999999999999999999999999999997 578988754333210 00 01112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEec-eEEEec-------CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTG-VGTILG-------PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~-------~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
. .++..++...+++.|++++.+ .+..++ .+.|.+.++.++.||+||+|||+.|+.|+.++.
T Consensus 266 ~-----------~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~ 334 (521)
T 1hyu_A 266 G-----------QKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGE 334 (521)
T ss_dssp H-----------HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTT
T ss_pred H-----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCCh
Confidence 2 233445555667789999998 555442 456777778889999999999998776654443
Q ss_pred ---CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEE
Q 008714 252 ---DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 252 ---~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~ 328 (556)
.+..++.+..+......+++|+|||+|++|+|+|..|++.|.+||++++.+++++ + +.+.+.+.+..||++
T Consensus 335 ~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v 408 (521)
T 1hyu_A 335 DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDI 408 (521)
T ss_dssp TTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEE
T ss_pred hhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEE
Confidence 3445665554433345689999999999999999999999999999999988764 3 334555654359999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 407 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~ 407 (556)
++++.++++..+ +++...+.+.++. .++..++++|.|++++|++||++++. . .+.. ++|+|.||+++|
T Consensus 409 ~~~~~v~~i~~~-~~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~pn~~~l~--~-~l~~~~~G~I~Vd~~~~------ 477 (521)
T 1hyu_A 409 ILNAQTTEVKGD-GSKVVGLEYRDRV-SGDIHSVALAGIFVQIGLLPNTHWLE--G-ALERNRMGEIIIDAKCE------ 477 (521)
T ss_dssp ECSEEEEEEEEC-SSSEEEEEEEETT-TCCEEEEECSEEEECCCEEESCGGGT--T-TSCBCTTSCBCCCTTCB------
T ss_pred EeCCEEEEEEcC-CCcEEEEEEEeCC-CCceEEEEcCEEEECcCCCCCchHHh--h-hhccCCCCcEEeCCCCC------
Confidence 999999999874 3444467776532 12235799999999999999998664 2 2444 679999999999
Q ss_pred CcCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q 008714 408 NLVPHLYCIGDANGKM-MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i~ 441 (556)
|++|||||+|||++.+ +.+..|+.||..||.+|.
T Consensus 478 ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 478 TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence 7999999999999864 689999999999999986
No 67
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=5.9e-34 Score=288.53 Aligned_cols=290 Identities=22% Similarity=0.272 Sum_probs=211.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-----CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-----DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-----~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
.+||+|||||++|+++|..|++.|++|+|||+ ..+||.|.....+. .+. +++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~~--~~~--- 64 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVE------------------NFP--GFP--- 64 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEEC------------------CST--TCT---
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccc------------------cCC--CCc---
Confidence 48999999999999999999999999999998 56777765322110 000 000
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
..++. ..+...+...+++.|++++.+.+..++ .+.|.+ ++.++.||+||+|||+.|..|+.++.
T Consensus 65 ~~~~~-----------~~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~ 132 (333)
T 1vdc_A 65 EGILG-----------VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGS 132 (333)
T ss_dssp TCEEH-----------HHHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTC
T ss_pred cCCCH-----------HHHHHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCc
Confidence 00111 233344555666789999988754433 235666 56789999999999999887765543
Q ss_pred CC-------CeEecccccccCC--CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhC
Q 008714 252 DG-------KTVITSDHALKLE--FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 322 (556)
Q Consensus 252 ~~-------~~v~t~~~~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 322 (556)
.. ..+++........ ..+++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~~~ 207 (333)
T 1vdc_A 133 GEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSN 207 (333)
T ss_dssp SSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTC
T ss_pred cccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHHhC
Confidence 32 3455444433333 5689999999999999999999999999999999887643 2222 2244454
Q ss_pred CCceEEEcCceEEEEEecCCC-CeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCC
Q 008714 323 PRKIDYHTGVFATKITPAKDG-KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERM 400 (556)
Q Consensus 323 ~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l 400 (556)
.||++++++.+.++..++++ +...+.+.+.. +++..++++|.|++|+|++|+++++. .++.. ++|+|.||+++
T Consensus 208 -~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~~~---~~l~~~~~G~i~vd~~~ 282 (333)
T 1vdc_A 208 -PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVV-TGDVSDLKVSGLFFAIGHEPATKFLD---GGVELDSDGYVVTKPGT 282 (333)
T ss_dssp -TTEEEECSEEEEEEEESSSSSSEEEEEEEETT-TCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCBCCCTTS
T ss_pred -CCeeEecCCceEEEeCCCCccceeeEEEEecC-CCceEEEecCEEEEEeCCccchHHhh---ccccccCCCCEEechhh
Confidence 89999999999999875321 33346665421 11235799999999999999998664 24544 58999999984
Q ss_pred -ccccCCCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 401 -RVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 401 -~~~~~~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
+ |+.|+|||+|||++. +..+..|..||+.||.+|.
T Consensus 283 ~~------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 319 (333)
T 1vdc_A 283 TQ------TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 319 (333)
T ss_dssp CB------CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred cc------cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence 6 799999999999986 4789999999999999986
No 68
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=100.00 E-value=3e-35 Score=313.43 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=222.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
+..+||||||||+||++||..|++. |.+|+|||+ +.++ +..|.+++.++...... .. ......+++...
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~----y~r~~lsk~l~~~~~~~--~~--~~~~~~~~~~~~ 80 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP----YMRPPLSKELWFSDDPN--VT--KTLRFKQWNGKE 80 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC----BCSGGGGTGGGCC--CT--HH--HHCEEECTTSCE
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC----CCCCCCCHHhhcCCccc--hh--hccccccccccc
Confidence 3468999999999999999999987 899999999 4444 23345667665432210 00 000011111000
Q ss_pred --cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCC
Q 008714 176 --AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~ 250 (556)
..+..... +.. ...+. .+.+.||+++.+. +..+ +.++|.+.++.++.||+||||||++|+.|+.++
T Consensus 81 ~~~~~~~~~~--~~~--~~~l~-----~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~ 151 (493)
T 1m6i_A 81 RSIYFQPPSF--YVS--AQDLP-----HIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAID 151 (493)
T ss_dssp EESBSSCGGG--SBC--TTTTT-----TSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHH
T ss_pred ccccccchHh--hcc--hhhhh-----hhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcc
Confidence 00000000 000 00000 0124689999984 4433 367888888889999999999999998776433
Q ss_pred CCC----CeEe---cccccccCC---CCCCeEEEEcCchhHHHHHHHHHh----CCCeEEEEEeCCCCCCC-CCHHHHHH
Q 008714 251 VDG----KTVI---TSDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTA----LGSEVTFIEALDQLMPG-FDPEIGKL 315 (556)
Q Consensus 251 ~~~----~~v~---t~~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~----~g~~Vtli~~~~~ll~~-~d~~~~~~ 315 (556)
... ..++ +.+++..+. ..+++++|||+|++|+|+|..|.+ .|.+|+++++.+.+++. +++++.+.
T Consensus 152 ~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~ 231 (493)
T 1m6i_A 152 RAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNW 231 (493)
T ss_dssp TSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHH
T ss_pred cccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHH
Confidence 210 1222 333433332 247999999999999999999877 57899999988877665 78889999
Q ss_pred HHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccC--CCc
Q 008714 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ--RGF 393 (556)
Q Consensus 316 ~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~--~G~ 393 (556)
+.+.+++ .||++++++.+++++.++ ..+.+++.+| +++++|.||+|+|.+||++++ +..++..+ +|+
T Consensus 232 ~~~~l~~-~GV~v~~~~~V~~i~~~~--~~~~v~l~dG------~~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~~~~gg 300 (493)
T 1m6i_A 232 TMEKVRR-EGVKVMPNAIVQSVGVSS--GKLLIKLKDG------RKVETDHIVAAVGLEPNVELA--KTGGLEIDSDFGG 300 (493)
T ss_dssp HHHHHHT-TTCEEECSCCEEEEEEET--TEEEEEETTS------CEEEESEEEECCCEEECCTTH--HHHTCCBCTTTCS
T ss_pred HHHHHHh-cCCEEEeCCEEEEEEecC--CeEEEEECCC------CEEECCEEEECCCCCccHHHH--HHcCCccccCCCc
Confidence 9999987 899999999999998642 2356778776 689999999999999999854 45566553 588
Q ss_pred eeeCCCCccccCCCCcCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHHhCCCccCCCCCccE
Q 008714 394 VPVDERMRVIDANGNLVPHLYCIGDANGK---------MMLAHAASAQGISVVEQVTGRDHVLNHLSIPA 454 (556)
Q Consensus 394 i~vd~~l~~~~~~~t~~~~Vya~GD~~~~---------~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~ 454 (556)
|.||++|| | .|||||+|||+.. ...+..|..||++||+||+|...+++ ..|+
T Consensus 301 i~Vd~~l~------t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~~~~--~~~~ 361 (493)
T 1m6i_A 301 FRVNAELQ------A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYW--HQSM 361 (493)
T ss_dssp EECCTTCE------E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCCCC--CCCE
T ss_pred EEECCCcc------c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCCCcC--CcCc
Confidence 99999999 4 5999999999853 23466899999999999998865544 4444
No 69
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=100.00 E-value=5.1e-36 Score=319.01 Aligned_cols=296 Identities=18% Similarity=0.164 Sum_probs=206.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+++|||||||+||+++|.+|++.+++|+|||+... ..+.. +++. ......+
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~---~~~~P------lL~~-------------------va~G~l~ 92 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY---FLFTP------LLPS-------------------APVGTVD 92 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE---EECGG------GGGG-------------------TTTTSSC
T ss_pred CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC---ccccc------chhH-------------------Hhhcccc
Confidence 346899999999999999999999999999999421 01111 1100 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEc--------------------cceEEEeCeEEE
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFG--------------------TDNIVTAKDIII 237 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~--------------------~~~~~~~d~lVi 237 (556)
...+.... ..+. .....+++++.+.+..+| .++|.+. ++.++.||+|||
T Consensus 93 ~~~i~~p~----~~~~-----~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LVi 163 (502)
T 4g6h_A 93 EKSIIEPI----VNFA-----LKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLIS 163 (502)
T ss_dssp GGGGEEEH----HHHH-----TTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEE
T ss_pred HHHhhhhH----HHHH-----HhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEE
Confidence 11000000 0000 112347899998877554 4566542 356899999999
Q ss_pred eCCCCCCCCCCCCCCCC--eEecccccccCC--------------------CCCCeEEEEcCchhHHHHHHHHHhCC---
Q 008714 238 ATGSVPFVPKGIEVDGK--TVITSDHALKLE--------------------FVPDWIAIVGSGYIGLEFSDVYTALG--- 292 (556)
Q Consensus 238 AtG~~p~~p~~~~~~~~--~v~t~~~~~~~~--------------------~~~~~v~VvG~G~~g~e~A~~l~~~g--- 292 (556)
|||+.|..+++++.... .+.+.+++..+. ....+++|||||++|+|+|..|.+++
T Consensus 164 AtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~ 243 (502)
T 4g6h_A 164 AVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD 243 (502)
T ss_dssp CCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred cCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHH
Confidence 99999988876664322 222333322110 01258999999999999999887643
Q ss_pred -----------CeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 293 -----------SEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 293 -----------~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
.+|+++++.++++|.+++++++.+++.|++ .||++++++.+++++.+ +........|| ...+++
T Consensus 244 l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~-~GV~v~~~~~v~~v~~~--~~~~~~~~~dg--~~~~~~ 318 (502)
T 4g6h_A 244 LRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLEN-TSIKVHLRTAVAKVEEK--QLLAKTKHEDG--KITEET 318 (502)
T ss_dssp HHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHH-TTCEEETTEEEEEECSS--EEEEEEECTTS--CEEEEE
T ss_pred HHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHh-cceeeecCceEEEEeCC--ceEEEEEecCc--ccceee
Confidence 689999999999999999999999999988 99999999999999652 22222233343 112257
Q ss_pred EecCEEEEeeCCCCCCCCCC-Cccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCC--CCCcHHHHHHHHHHHH
Q 008714 362 LEVDAALIATGRAPFTNGLG-LENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANG--KMMLAHAASAQGISVV 437 (556)
Q Consensus 362 i~~D~vi~a~G~~p~~~~l~-l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~--~~~~~~~A~~qg~~aa 437 (556)
+++|+||||+|.+||....+ ....+... .+|+|.||++||+ +++|||||+|||+. .|++++.|.+||+++|
T Consensus 319 i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~-----~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A 393 (502)
T 4g6h_A 319 IPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQV-----KGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLA 393 (502)
T ss_dssp EECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBB-----TTCSSEEECGGGEESSSCCCHHHHHHHHHHHH
T ss_pred eccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCcccc-----CCCCCEEEEEcccCCCCCCchHHHHHHHHHHH
Confidence 99999999999999842111 12233333 6789999999997 78999999999974 4789999999999999
Q ss_pred HHHhC
Q 008714 438 EQVTG 442 (556)
Q Consensus 438 ~~i~g 442 (556)
+||.+
T Consensus 394 ~ni~~ 398 (502)
T 4g6h_A 394 KNFDK 398 (502)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99963
No 70
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=3.5e-34 Score=292.54 Aligned_cols=300 Identities=20% Similarity=0.270 Sum_probs=204.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
++||+|||||++|+++|..|+++|++|+|||+ +.+||.|.+ +.|+..+...... ..+..+..+.....+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 73 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH--AWHSLHLFSPAGW-------SSIPGWPMPASQGPYP 73 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG--SCTTCBCSSCGGG-------SCCSSSCCCCCSSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC--CCCCcEecCchhh-------hhCCCCCCCCCccCCC
Confidence 48999999999999999999999999999999 789999875 2333222211100 0011111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--cC--CE-EEEccceEEEeCeEEEeCCC--CCCCCCCCC-
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GP--QK-VKFGTDNIVTAKDIIIATGS--VPFVPKGIE- 250 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~~--~~-v~~~~~~~~~~d~lViAtG~--~p~~p~~~~- 250 (556)
. ...+..++...+++.|++++.+.. ..+ +. +. |.+.++ ++.||+||+|||. .|..|+.++
T Consensus 74 ~----------~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~ 142 (357)
T 4a9w_A 74 A----------RAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGL 142 (357)
T ss_dssp B----------HHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTG
T ss_pred C----------HHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCc
Confidence 1 133445555666778999888743 222 22 33 666665 8999999999995 566665443
Q ss_pred --CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC-CCCCCCC--CHHHHHHHHHHHhC---
Q 008714 251 --VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL-DQLMPGF--DPEIGKLAQRVLIN--- 322 (556)
Q Consensus 251 --~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~-~~ll~~~--d~~~~~~~~~~l~~--- 322 (556)
+.+..+++.+........+++|+|||+|.+|+|+|..|.+.| +|+++.+. +.++|.. ..++.+.+.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (357)
T 4a9w_A 143 ESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221 (357)
T ss_dssp GGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------
T ss_pred cccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhcccc
Confidence 334455555555444556799999999999999999999998 69999988 5677652 34444433333321
Q ss_pred ------------------------CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 323 ------------------------PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 323 ------------------------~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..|+ +..+..+.+++.. .+.+.+| +++++|.|++|+|++|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g------~~i~~D~vi~a~G~~p~~~ 288 (357)
T 4a9w_A 222 GREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADG------TERAFDAVIWCTGFRPALS 288 (357)
T ss_dssp ------------CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTS------CEEECSEEEECCCBCCCCG
T ss_pred ccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCC------CEecCCEEEECCCcCCCCc
Confidence 1232 3333444455431 2666666 6899999999999999988
Q ss_pred CCCCcccccccCCCceeeCCC--CccccCCCCcCCCEEEec--ccCC-CCCcHHHHHHHHHHHHHHHhC
Q 008714 379 GLGLENINVVTQRGFVPVDER--MRVIDANGNLVPHLYCIG--DANG-KMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 379 ~l~l~~~~~~~~~G~i~vd~~--l~~~~~~~t~~~~Vya~G--D~~~-~~~~~~~A~~qg~~aa~~i~g 442 (556)
++ +..++..++|+|.||++ ++ |+.|||||+| ||++ .+.....|..||+++|+||..
T Consensus 289 ~l--~~~gl~~~~G~i~vd~~~l~~------t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 289 HL--KGLDLVTPQGQVEVDGSGLRA------LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp GG--TTTTCBCTTSCBCBCTTSCBB------SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred cc--CcccccCCCCCccccCCcccC------CCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 66 55677778899999999 66 8999999999 6666 467888899999999999873
No 71
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=100.00 E-value=5.1e-35 Score=335.91 Aligned_cols=312 Identities=17% Similarity=0.198 Sum_probs=222.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC-eEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
..+||+||||||||++||..|+++|+ +|+|||+ +.+||.+.+ ++|...
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~--~ip~~~---------------------------- 235 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS--EIPQFR---------------------------- 235 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH--TSCTTT----------------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccc--cCCccc----------------------------
Confidence 46899999999999999999999999 7999999 688997531 223110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCC-CCC-CC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGI-EVD-GK 254 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~-~~~-~~ 254 (556)
.. ..+..+..+.+++.||+++.+..+. .+.+.+.++.++.||+||||||+. |+.++.+ +.+ ..
T Consensus 236 ~~------------~~~~~~~~~~~~~~gv~~~~~~~v~--~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~ 301 (1025)
T 1gte_A 236 LP------------YDVVNFEIELMKDLGVKIICGKSLS--ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQ 301 (1025)
T ss_dssp SC------------HHHHHHHHHHHHTTTCEEEESCCBS--TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTT
T ss_pred CC------------HHHHHHHHHHHHHCCcEEEcccEec--cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCC
Confidence 00 0111223445667899999887542 234555555567899999999994 8766532 222 23
Q ss_pred eEeccccccc----------------CCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCC-CCCCCCCHHHHHHH
Q 008714 255 TVITSDHALK----------------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALD-QLMPGFDPEIGKLA 316 (556)
Q Consensus 255 ~v~t~~~~~~----------------~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~-~ll~~~d~~~~~~~ 316 (556)
.+++..+++. +...+++|+|||||++|+|+|..+.++|. +||+++|++ .+++.+++++
T Consensus 302 gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~---- 377 (1025)
T 1gte_A 302 GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV---- 377 (1025)
T ss_dssp TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH----
T ss_pred CEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH----
Confidence 4666544322 23456899999999999999999999996 899999988 5778777765
Q ss_pred HHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEec------CC---CCCCCceEecCEEEEeeCCCCCCCCCCCccccc
Q 008714 317 QRVLINPRKIDYHTGVFATKITPAKDGKPVTIELID------AK---TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387 (556)
Q Consensus 317 ~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~------g~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~ 387 (556)
+.+++ .||+++++..+.++..+ +++...+++.+ |. ..+++.++++|.||+|+|++|+...+..+..++
T Consensus 378 -~~~~~-~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl 454 (1025)
T 1gte_A 378 -ELAKE-EKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPI 454 (1025)
T ss_dssp -HHHHH-TTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTS
T ss_pred -HHHHH-cCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCc
Confidence 23444 79999999999999864 45444455431 10 011124789999999999987643332222355
Q ss_pred cc-CCCceeeCC-CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC---ccCCCCCccEEEecccce
Q 008714 388 VT-QRGFVPVDE-RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD---HVLNHLSIPAACFTHPEI 462 (556)
Q Consensus 388 ~~-~~G~i~vd~-~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~---~~~~~~~~p~~~~~~~~i 462 (556)
.. ++|+|.||+ ++| |+.|+|||+|||++.+.+++.|+.||+.||++|.+.- ...++..+|.+.|+.|++
T Consensus 455 ~~~~~G~I~vd~~~~~------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev 528 (1025)
T 1gte_A 455 KFNRWDLPEVDPETMQ------TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPV 528 (1025)
T ss_dssp CBCTTSSBCCCTTTCB------CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGG
T ss_pred eECCCCCEEECCCCCc------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccccc
Confidence 55 589999997 798 7999999999999989999999999999999997421 123444566677777766
Q ss_pred eEecCC
Q 008714 463 SMVGLT 468 (556)
Q Consensus 463 ~~vG~t 468 (556)
+.++++
T Consensus 529 ~~v~ls 534 (1025)
T 1gte_A 529 DLVDIS 534 (1025)
T ss_dssp GGCCCC
T ss_pred ccccce
Confidence 665554
No 72
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=100.00 E-value=1.3e-34 Score=304.40 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=202.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..+||+||||||||+++|..|++.|++|+|||+ +.+||.+.+. +|.. ..
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g--ip~~----------------------------~~ 170 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG--IPGF----------------------------KL 170 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT--SCTT----------------------------TS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec--CCCc----------------------------cC
Confidence 458999999999999999999999999999999 6788875421 2210 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
+ ..+..+..+.+++.||+++.+..+ . +.+.+.+. .+.||+||+|||+. |+.+++++.+...++
T Consensus 171 ~------------~~~~~~~~~~l~~~gv~~~~~~~v--~-~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~ 234 (456)
T 2vdc_G 171 E------------KSVVERRVKLLADAGVIYHPNFEV--G-RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIV 234 (456)
T ss_dssp C------------HHHHHHHHHHHHHTTCEEETTCCB--T-TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEE
T ss_pred C------------HHHHHHHHHHHHHCCcEEEeCCEe--c-cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcE
Confidence 1 112223345566789999987642 1 23333332 36799999999997 666665555444455
Q ss_pred cccccc------------------cCCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCC-CCCCCHHHHHHHH
Q 008714 258 TSDHAL------------------KLEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL-MPGFDPEIGKLAQ 317 (556)
Q Consensus 258 t~~~~~------------------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~l-l~~~d~~~~~~~~ 317 (556)
+..+++ .....+++|+|||+|++|+|+|..+.+.|. +||+++|++.+ +|..+.++
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~----- 309 (456)
T 2vdc_G 235 AALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREV----- 309 (456)
T ss_dssp EHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHH-----
T ss_pred EHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHH-----
Confidence 432211 022467999999999999999999999997 59999999876 77665542
Q ss_pred HHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe---------cCCC-----CCCCceEecCEEEEeeCCCCCCCCCCCc
Q 008714 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELI---------DAKT-----KEPKDTLEVDAALIATGRAPFTNGLGLE 383 (556)
Q Consensus 318 ~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---------~g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~ 383 (556)
+.+++ .||+++++..++++..+ ++...+++. +|.. .+++.++++|.||+|+|+.|++..+.++
T Consensus 310 ~~~~~-~Gv~~~~~~~~~~i~~~--g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~ 386 (456)
T 2vdc_G 310 AHAEE-EGVEFIWQAAPEGFTGD--TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD 386 (456)
T ss_dssp HHHHH-TTCEEECCSSSCCEEEE--EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH
T ss_pred HHHHH-CCCEEEeCCCceEEeCC--CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcc
Confidence 33444 79999999988888752 321112211 1100 1123579999999999999987521124
Q ss_pred cccccc-CCCceeeCCC-CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q 008714 384 NINVVT-QRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 384 ~~~~~~-~~G~i~vd~~-l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g 442 (556)
..++.. ++|+|.||++ +| |+.|+|||+|||+..+.++..|+.||+.||++|.+
T Consensus 387 ~~gl~~~~~G~i~vd~~~~~------Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 387 EPELKVTRWGTLLVDHRTKM------TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp STTSCBCTTSSBCCCTTTCB------CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred cCCeeECCCCCEEECCCCCc------CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence 556655 7899999998 88 79999999999999899999999999999999863
No 73
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=2e-33 Score=288.75 Aligned_cols=311 Identities=16% Similarity=0.173 Sum_probs=207.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC-eEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc-cccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ-VHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 178 (556)
++||+|||||++|+++|..|++.|. +|+|||+..+||+|.+... +..+.... .....+|+. ......
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~---~~~~~~~~--------~~~~~~g~~~~~~~~~ 72 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPK---STRTITPS--------FTSNGFGMPDMNAISM 72 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCT---TCBCSSCC--------CCCGGGTCCCTTCSST
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcc---cccccCcc--------hhcccCCchhhhhccc
Confidence 4899999999999999999999999 9999999559999875422 11000000 000111210 000000
Q ss_pred CH-HHHHHHHH-HHHHHHHHHHHHHHHHcCcEEEeceE-EEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 179 DR-QGVADHAN-NLATKIRNNLTNSMKALGVDILTGVG-TILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 179 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
+. ..+..... .....+..++...+++.|++++.+.. ..++ .+.|.+.++ ++.||+||+|||+.+. |..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip~- 149 (369)
T 3d1c_A 73 DTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKPF- 149 (369)
T ss_dssp TCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCCS-
T ss_pred cccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCCC-
Confidence 00 00000000 00123444555666778999998753 3232 356666654 6999999999999754 33222
Q ss_pred CCCeEecccccccCCC-CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------CCHHHHHHHHHHHhCC
Q 008714 252 DGKTVITSDHALKLEF-VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FDPEIGKLAQRVLINP 323 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~-~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------~d~~~~~~~~~~l~~~ 323 (556)
+. +++......... ..++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++...+.+.+.+++
T Consensus 150 -~~-~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~- 226 (369)
T 3d1c_A 150 -KY-GIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQ- 226 (369)
T ss_dssp -SS-CEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHT-
T ss_pred -Cc-eechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhh-
Confidence 22 333333333333 4579999999999999999999999999999999887742 456777888888887
Q ss_pred Cc-eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE-ecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCc
Q 008714 324 RK-IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL-EVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMR 401 (556)
Q Consensus 324 ~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i-~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~ 401 (556)
.| |+++.++.+.+++..+ ..+.+++.+| +++ .+|.||+|+|++|+++.+. ..++..++|+|.||++++
T Consensus 227 ~g~v~~~~~~~v~~i~~~~--~~~~v~~~~g------~~~~~~d~vi~a~G~~~~~~~~~--~~~~~~~~g~i~v~~~~~ 296 (369)
T 3d1c_A 227 GARIEMNVHYTVKDIDFNN--GQYHISFDSG------QSVHTPHEPILATGFDATKNPIV--QQLFVTTNQDIKLTTHDE 296 (369)
T ss_dssp TCCEEEECSCCEEEEEEET--TEEEEEESSS------CCEEESSCCEECCCBCGGGSHHH--HHHSCCTTSCCCBCTTSB
T ss_pred CCcEEEecCcEEEEEEecC--CceEEEecCC------eEeccCCceEEeeccCCccchhh--hhhccCCCCCEEechhhc
Confidence 76 9999999999997642 2356777776 344 4699999999999986542 223335688999998755
Q ss_pred cccCCCCcCCCEEEecccCCCCC----cHHHHHHHHHHHHHHHhCC
Q 008714 402 VIDANGNLVPHLYCIGDANGKMM----LAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 402 ~~~~~~t~~~~Vya~GD~~~~~~----~~~~A~~qg~~aa~~i~g~ 443 (556)
. |+.|||||+|||+..+. ....+.+||+++|++|.++
T Consensus 297 ~-----t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~ 337 (369)
T 3d1c_A 297 S-----TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQR 337 (369)
T ss_dssp B-----SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHH
T ss_pred c-----cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcc
Confidence 4 89999999999986532 3456888999999999865
No 74
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=9e-32 Score=284.38 Aligned_cols=296 Identities=18% Similarity=0.180 Sum_probs=201.5
Q ss_pred ccEEEECCChHHHHHHHHHHH---cCCe---EEEecC-CcCCcccccc---CCCCch----hhHhhhHHHHHhhhhhhhh
Q 008714 102 YDLIIIGAGVGGHGAALHAVE---KGLK---TAIIEG-DVVGGTCVNR---GCVPSK----ALLAVSGRMRELQSEHHMK 167 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~---~g~~---V~viEk-~~~GG~~~~~---g~ips~----~l~~~~~~~~~~~~~~~~~ 167 (556)
+||+|||||++|+++|..|++ .|++ |+|||+ +.+||+|.+. +|.|.. ...+.............+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 9999 999999 7899999863 443311 1110000000000000011
Q ss_pred hcCcccc-----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcE--EEeceEE-Ee---c---CCEEEEcc---c--e
Q 008714 168 ALGLQVH-----AAGYDRQGVADHANNLATKIRNNLTNSMKALGVD--ILTGVGT-IL---G---PQKVKFGT---D--N 228 (556)
Q Consensus 168 ~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~-~~---~---~~~v~~~~---~--~ 228 (556)
.+.++.. ....+. ..+..++...+++.|++ ++.+..+ .+ + .+.|.+.+ + .
T Consensus 83 ~~~~~~~~~~~~~~~~~~-----------~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~ 151 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPR-----------EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151 (464)
T ss_dssp TBCHHHHHSSCCCSSCBH-----------HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCCCCcccCCCCCCCCCH-----------HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceE
Confidence 1111100 011122 33444455555666776 6655432 22 1 24676644 3 5
Q ss_pred EEEeCeEEEeCC--CCCCCCCCCCCC---CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 229 IVTAKDIIIATG--SVPFVPKGIEVD---GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 229 ~~~~d~lViAtG--~~p~~p~~~~~~---~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
++.||+||+||| +.|++|+.++.+ +..+++.+........+++|+|||+|++|+|+|..|++.|.+|+++++++.
T Consensus 152 ~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 152 SEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp EEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred EEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 789999999999 788888765543 333444333322335689999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCc
Q 008714 304 LMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLE 383 (556)
Q Consensus 304 ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~ 383 (556)
+++.. + . .||+++ ..|++++. + .|.+.|| +++++|.||+|||++|+++++. +
T Consensus 232 ~~~~~-----------~-~-~~V~~~--~~V~~i~~--~----~V~~~dG------~~i~~D~Vi~atG~~p~~~~l~-~ 283 (464)
T 2xve_A 232 PMGYK-----------W-P-ENWDER--PNLVRVDT--E----NAYFADG------SSEKVDAIILCTGYIHHFPFLN-D 283 (464)
T ss_dssp CCCCC-----------C-C-TTEEEC--SCEEEECS--S----EEEETTS------CEEECSEEEECCCBCCCCTTBC-T
T ss_pred CCCCC-----------C-C-CceEEc--CCeEEEeC--C----EEEECCC------CEEeCCEEEECCCCCCCCCCcC-c
Confidence 77642 1 2 578887 67888853 2 3778877 5789999999999999998875 3
Q ss_pred ccccccCCC-ceeeCCC---CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 384 NINVVTQRG-FVPVDER---MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 384 ~~~~~~~~G-~i~vd~~---l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
..++..+++ ++ +|.+ ++ |+.|+|||+||+... .+.+.|..||+++++++.|+.
T Consensus 284 ~~gl~~~~~~~v-~~~~~~~~~------t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 284 DLRLVTNNRLWP-LNLYKGVVW------EDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp TTCCCCCSSSCC-SSEETTTEE------SSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccCCCccc-ccccceEec------CCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence 356665443 55 4433 34 789999999999864 578999999999999999864
No 75
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=100.00 E-value=1.8e-32 Score=288.04 Aligned_cols=288 Identities=19% Similarity=0.234 Sum_probs=202.9
Q ss_pred CccEEEECCChHHHHHHHHHHH---cCCeEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE---KGLKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
+.||+|||||++|+++|..|++ .|++|+|||+.. +. +.|...... .+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~~~~~~~----------------~g------ 54 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVPSNPWVG----------------VG------ 54 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGGGHHHHH----------------HT------
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccCCccccc----------------cC------
Confidence 4799999999999999999999 799999999943 11 111110000 00
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCC-
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG- 253 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~- 253 (556)
..+. +++...+.+.+++.||+++.+.+..++ .+.|.+.+++++.||+||+|||+.|..|+.++.+.
T Consensus 55 ~~~~-----------~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~ 123 (437)
T 3sx6_A 55 WKER-----------DDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPH 123 (437)
T ss_dssp SSCH-----------HHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTT
T ss_pred ccCH-----------HHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcc
Confidence 0111 122223344556689999998877665 45888888888999999999999988776555442
Q ss_pred --C--eEecccccccCCC------CCCeEEEEcCchhH------HHHH----HHHHhCCCe-----EEEEEeCCCC----
Q 008714 254 --K--TVITSDHALKLEF------VPDWIAIVGSGYIG------LEFS----DVYTALGSE-----VTFIEALDQL---- 304 (556)
Q Consensus 254 --~--~v~t~~~~~~~~~------~~~~v~VvG~G~~g------~e~A----~~l~~~g~~-----Vtli~~~~~l---- 304 (556)
. .+++.+++..+.. .+++++|||+|+.+ +|+| ..+.+.|.+ |+++++.+.+
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~ 203 (437)
T 3sx6_A 124 EGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLG 203 (437)
T ss_dssp TSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTT
T ss_pred cCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccc
Confidence 2 2334444433221 14567899986544 8877 666777864 9999999877
Q ss_pred CCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCC-CCCceEecCEEEEeeCCCCCCCCCCCc
Q 008714 305 MPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK-EPKDTLEVDAALIATGRAPFTNGLGLE 383 (556)
Q Consensus 305 l~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~-~~~~~i~~D~vi~a~G~~p~~~~l~l~ 383 (556)
++.+. +..+.+++.+++ .||++++++.+++|+.+ + +.++..+.+.+ .+..++++|.+++++|++|+.... +
T Consensus 204 l~~~~-~~~~~~~~~l~~-~gI~~~~~~~v~~v~~~--~--v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~--~ 275 (437)
T 3sx6_A 204 IQGVG-DSKGILTKGLKE-EGIEAYTNCKVTKVEDN--K--MYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVA--G 275 (437)
T ss_dssp TTCCT-THHHHHHHHHHH-TTCEEECSEEEEEEETT--E--EEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHH--T
T ss_pred cCcch-HHHHHHHHHHHH-CCCEEEcCCEEEEEECC--e--EEEEecccCCccccceEEEEeEEEEcCCCcCchhhh--c
Confidence 33333 477888888887 89999999999999753 2 33332111000 013679999999999988875432 2
Q ss_pred ccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCC------------CCcHHHHHHHHHHHHHHHh
Q 008714 384 NINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK------------MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 384 ~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~------------~~~~~~A~~qg~~aa~~i~ 441 (556)
..++..++|+|.||+++|+ +++|||||+|||++. |++++.|..||+++|+||.
T Consensus 276 ~~gl~~~~G~i~Vd~~l~t-----~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 276 VEGLCNPGGFVLVDEHQRS-----KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp STTTBCTTSCBCBCTTSBB-----SSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcEEeChhccC-----CCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 2455558899999999996 589999999999863 5689999999999999997
No 76
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=100.00 E-value=1.2e-32 Score=289.84 Aligned_cols=284 Identities=15% Similarity=0.156 Sum_probs=202.9
Q ss_pred CccEEEECCChHHHHHHHHHHH-c------CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE-K------GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~-~------g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
.+||+||||||||+++|..|++ . |.+|+|||+ +.+||.|. .+|.|.+...
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~-~gv~p~~~~~--------------------- 60 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR-SGVAPDHPKI--------------------- 60 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH-HTSCTTCTGG---------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc-cccCCCCCCH---------------------
Confidence 4799999999999999999999 7 999999999 67899884 5666643211
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCC
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEV 251 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~ 251 (556)
.++..++...+++.+++++.+.. + .+.|.+.++ ++.||+||+|||+. |+.|++++.
T Consensus 61 -------------------~~~~~~~~~~~~~~~v~~~~~v~--v-~~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~ 117 (456)
T 1lqt_A 61 -------------------KSISKQFEKTAEDPRFRFFGNVV--V-GEHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGE 117 (456)
T ss_dssp -------------------GGGHHHHHHHHTSTTEEEEESCC--B-TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTT
T ss_pred -------------------HHHHHHHHHHHhcCCCEEEeeEE--E-CCEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCC
Confidence 11112233445567899887742 2 234555444 57999999999997 666666555
Q ss_pred CCCeEecccccc-----------cCC-CCCCeEEEEcCchhHHHHHHHHHhC--------------------C-CeEEEE
Q 008714 252 DGKTVITSDHAL-----------KLE-FVPDWIAIVGSGYIGLEFSDVYTAL--------------------G-SEVTFI 298 (556)
Q Consensus 252 ~~~~v~t~~~~~-----------~~~-~~~~~v~VvG~G~~g~e~A~~l~~~--------------------g-~~Vtli 298 (556)
+...++++.++. .+. ..+++|+|||+|++|+|+|..|.+. | .+|+++
T Consensus 118 ~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv 197 (456)
T 1lqt_A 118 DLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIV 197 (456)
T ss_dssp TSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEE
T ss_pred CCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEE
Confidence 444466654431 222 2479999999999999999999874 5 599999
Q ss_pred EeCCCCCCCCCH-------------------HH------------------HHHHHHHHhCC-----CceEEEcCceEEE
Q 008714 299 EALDQLMPGFDP-------------------EI------------------GKLAQRVLINP-----RKIDYHTGVFATK 336 (556)
Q Consensus 299 ~~~~~ll~~~d~-------------------~~------------------~~~~~~~l~~~-----~gV~~~~~~~v~~ 336 (556)
.|++.++..|++ ++ .+.+.+.+.+. .||+++++..+.+
T Consensus 198 ~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~ 277 (456)
T 1lqt_A 198 GRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIE 277 (456)
T ss_dssp CSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEE
T ss_pred ecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeE
Confidence 999877555432 11 23444544432 6899999999999
Q ss_pred EEecCCCCeEEEEEecC----C--------CCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccc
Q 008714 337 ITPAKDGKPVTIELIDA----K--------TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVI 403 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g----~--------~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~ 403 (556)
|..+ ++...+++.+. . ..++.+++++|+|++++|++|++- .++.. ++|+|.+|+++|+
T Consensus 278 i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l------~gl~~d~~g~i~vn~~~rv- 348 (456)
T 1lqt_A 278 IKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT------PGLPFDDQSGTIPNVGGRI- 348 (456)
T ss_dssp EECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC------TTSCCBTTTTBCCEETTEE-
T ss_pred EecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC------CCCcccCCCCeeECCCCcC-
Confidence 9864 33223444310 0 011225799999999999999982 12333 5688999999997
Q ss_pred cCCCCcCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhC
Q 008714 404 DANGNLVPHLYCIGDANGKMM-LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 404 ~~~~t~~~~Vya~GD~~~~~~-~~~~A~~qg~~aa~~i~g 442 (556)
|+.|+|||+|||...|. +...|+.||..+|.+|++
T Consensus 349 ----t~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 349 ----NGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp ----TTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred ----CCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 78999999999986655 677899999999999974
No 77
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.98 E-value=3.4e-32 Score=286.63 Aligned_cols=286 Identities=16% Similarity=0.165 Sum_probs=202.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+||+|||||++|+++|..|++.| .+|+|||+ +.+||.| +.+|.|.+...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~-~~g~~p~~~~~-------------------------- 58 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV-RFGVAPDHPEV-------------------------- 58 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH-HHTSCTTCGGG--------------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee-ecccCCCCccH--------------------------
Confidence 379999999999999999999998 99999999 6777765 44555543211
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCC-CCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p-~~p~~~~~~~~~v 256 (556)
..+..++...+++.|++++.+... .+.|.+.+ .++.||+||+|||+.| +.|++++.+...+
T Consensus 59 --------------~~~~~~~~~~~~~~gv~~~~~~~v---~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv 120 (460)
T 1cjc_A 59 --------------KNVINTFTQTARSDRCAFYGNVEV---GRDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGV 120 (460)
T ss_dssp --------------GGHHHHHHHHHTSTTEEEEBSCCB---TTTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTE
T ss_pred --------------HHHHHHHHHHHHhCCcEEEeeeEE---eeEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcE
Confidence 112223344556679998877532 23344433 3478999999999995 6677776655567
Q ss_pred ecccccc----------cCC--CCCCeEEEEcCchhHHHHHHHHH--------------------hCCC-eEEEEEeCCC
Q 008714 257 ITSDHAL----------KLE--FVPDWIAIVGSGYIGLEFSDVYT--------------------ALGS-EVTFIEALDQ 303 (556)
Q Consensus 257 ~t~~~~~----------~~~--~~~~~v~VvG~G~~g~e~A~~l~--------------------~~g~-~Vtli~~~~~ 303 (556)
+++.++. .+. ..+++++|||+|++|+|+|..|. +.|. +|+++.|++.
T Consensus 121 ~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 121 FSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp EEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred EEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 7665442 111 24799999999999999999998 5676 7999999886
Q ss_pred C--------------CCCCC-------------------HH---HHHHHHHHHhC-------------CCceEEEcCceE
Q 008714 304 L--------------MPGFD-------------------PE---IGKLAQRVLIN-------------PRKIDYHTGVFA 334 (556)
Q Consensus 304 l--------------l~~~d-------------------~~---~~~~~~~~l~~-------------~~gV~~~~~~~v 334 (556)
+ +|.++ .. +.+.+.+.+.+ ..||+++++..+
T Consensus 201 ~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 280 (460)
T 1cjc_A 201 LQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSP 280 (460)
T ss_dssp GGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEE
T ss_pred HhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCCh
Confidence 5 34211 10 22333344432 178999999999
Q ss_pred EEEEecCCC-CeEEEEEecCCC-----------CCCCceEecCEEEEeeCCCCCCCCCCCccccc-cc-CCCceeeCCCC
Q 008714 335 TKITPAKDG-KPVTIELIDAKT-----------KEPKDTLEVDAALIATGRAPFTNGLGLENINV-VT-QRGFVPVDERM 400 (556)
Q Consensus 335 ~~i~~~~~g-~~~~v~~~~g~~-----------~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~-~~-~~G~i~vd~~l 400 (556)
.+|..++++ +...+++.+... .++.+++++|+||+++|++|++. .++ .. ++|+|.||+++
T Consensus 281 ~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l------~gl~~~d~~g~i~vn~~~ 354 (460)
T 1cjc_A 281 QQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI------DPSVPFDPKLGVVPNMEG 354 (460)
T ss_dssp EEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC------CTTSCCBTTTTBCCEETT
T ss_pred heEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC------CCCcccccCCCeeECCCC
Confidence 999875334 444455432000 01225799999999999999972 234 33 56889999999
Q ss_pred ccccCCCCcCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhC
Q 008714 401 RVIDANGNLVPHLYCIGDANGKMM-LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~~~~~-~~~~A~~qg~~aa~~i~g 442 (556)
|+ +.+|+|||+|||+..|. ....|+.+|+.+|.||++
T Consensus 355 rt-----~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 355 RV-----VDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp EE-----TTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cC-----cCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 95 23799999999986554 578999999999999974
No 78
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.97 E-value=3.6e-32 Score=283.56 Aligned_cols=279 Identities=19% Similarity=0.236 Sum_probs=204.9
Q ss_pred ccEEEECCChHHHHHHHHHHH---cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVE---KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.||+|||||++|+++|..|++ .|.+|+|||+ +.++... +.+... .+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~----~~~~~~-------------------~~~------ 52 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP----ALPHVA-------------------IGV------ 52 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECC----SSCCCC-------------------SSC------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceecc----chhhcc-------------------cCC------
Confidence 589999999999999999999 8999999999 4332211 111000 000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccce----EEEeCeEEEeCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDN----IVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~----~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
.+. +++...+.+.+++.|++++.+.+..++ .+.|.+.++. ++.||+||+|||+.|..|++++.
T Consensus 53 ~~~-----------~~~~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~ 121 (409)
T 3h8l_A 53 RDV-----------DELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGW 121 (409)
T ss_dssp CCC-----------CCEEEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTH
T ss_pred cCH-----------HHHHHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCCh
Confidence 000 001112233445579999999776554 4577776554 49999999999999887765544
Q ss_pred C--CCeEecccccccCC----CCCCeEEEEcCch-------------------------hHHHHH----HHHHhCC----
Q 008714 252 D--GKTVITSDHALKLE----FVPDWIAIVGSGY-------------------------IGLEFS----DVYTALG---- 292 (556)
Q Consensus 252 ~--~~~v~t~~~~~~~~----~~~~~v~VvG~G~-------------------------~g~e~A----~~l~~~g---- 292 (556)
+ ...+++.++...+. ...++++|||+|. +++|+| ..+.+.|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~ 201 (409)
T 3h8l_A 122 DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDK 201 (409)
T ss_dssp HHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTT
T ss_pred hhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 3 22334444433322 2236777999992 467777 5566777
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 293 SEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 293 ~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
.+|+++++.+ +++.+++++.+.+.+.+++ .||++++++.|++++.+ .+.+.+| +++++|.||+++|
T Consensus 202 ~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~-~gV~~~~~~~v~~i~~~------~v~~~~g------~~~~~D~vi~a~G 267 (409)
T 3h8l_A 202 VHVTVFSPGE-YLSDLSPNSRKAVASIYNQ-LGIKLVHNFKIKEIREH------EIVDEKG------NTIPADITILLPP 267 (409)
T ss_dssp EEEEEECSSS-SSTTBCHHHHHHHHHHHHH-HTCEEECSCCEEEECSS------EEEETTS------CEEECSEEEEECC
T ss_pred eEEEEEeCCc-cccccCHHHHHHHHHHHHH-CCCEEEcCCceEEECCC------eEEECCC------CEEeeeEEEECCC
Confidence 4899999988 8888999999999999987 89999999999999753 2677776 6899999999999
Q ss_pred CCCCCCCCCCccc--ccccCCCceeeCCCCccccCCCCcCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHhC
Q 008714 373 RAPFTNGLGLENI--NVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG--KMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 373 ~~p~~~~l~l~~~--~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~--~~~~~~~A~~qg~~aa~~i~g 442 (556)
+.|+.. + ... ++..++|+|.||+++|+ +++|||||+|||++ .+++++.|..||+++|+||.+
T Consensus 268 ~~~~~~-l--~~~~~~l~~~~G~i~vd~~~~~-----~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 268 YTGNPA-L--KNSTPDLVDDGGFIPTDLNMVS-----IKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp EECCHH-H--HTSCGGGSCTTSCBCBBTTSBB-----SSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCccHH-H--HhccccCcCCCCCEEeCccccc-----CCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999853 2 344 45457899999999996 58999999999986 478999999999999999974
No 79
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.97 E-value=6.4e-32 Score=280.92 Aligned_cols=308 Identities=17% Similarity=0.199 Sum_probs=207.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||||||+||+++|.+|++++ .+|+|||+......|. .. ..+. .+ . . +......+
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p----~~-~~v~--~g----~--------~--~~~~~~~~ 61 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY----MS-NEVI--GG----D--------R--ELASLRVG 61 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST----TH-HHHH--HT----S--------S--CGGGGEEC
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc----CH-HHHh--cC----C--------C--CHHHHhhC
Confidence 47999999999999999999875 6899999954322221 00 0000 00 0 0 00000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCC---
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGK--- 254 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~--- 254 (556)
. +.+...||+++.+.++.++ .+.|.+.++.++.||+||+|||+.+..+++++....
T Consensus 62 ~-------------------~~~~~~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~ 122 (401)
T 3vrd_B 62 Y-------------------DGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAA 122 (401)
T ss_dssp S-------------------HHHHHTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGG
T ss_pred H-------------------HHHHHCCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhccc
Confidence 1 1223469999999887664 578888888999999999999999877665554321
Q ss_pred -eEe---cccccccC----C-CCCCeEEEEcCch-----------hHHHHHHHHHhCC--CeEEEEEeCCCCCC--CCCH
Q 008714 255 -TVI---TSDHALKL----E-FVPDWIAIVGSGY-----------IGLEFSDVYTALG--SEVTFIEALDQLMP--GFDP 310 (556)
Q Consensus 255 -~v~---t~~~~~~~----~-~~~~~v~VvG~G~-----------~g~e~A~~l~~~g--~~Vtli~~~~~ll~--~~d~ 310 (556)
.++ +.++...+ . ......+|+++|. .+++++..|++.+ .+|+++++.+.+.. .+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 202 (401)
T 3vrd_B 123 KLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTK 202 (401)
T ss_dssp TSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHH
T ss_pred CccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccH
Confidence 111 22222211 1 1223344443322 3566777777665 78999998887643 3566
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccC
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ 390 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~ 390 (556)
++.+.+.+.+++ .||+++++..+..++.+.+. ..+++.+| +++++|++++++|.+|+.. ++..++.++
T Consensus 203 ~~~~~~~~~l~~-~gi~v~~~~~v~~v~~~~~~--~~v~~~~g------~~i~~D~vi~~~g~~~~~~---~~~~gl~~~ 270 (401)
T 3vrd_B 203 GWERLYGFGTEN-ALIEWHPGPDAAVVKTDTEA--MTVETSFG------ETFKAAVINLIPPQRAGKI---AQSASLTND 270 (401)
T ss_dssp HHHHHSCTTSTT-CSEEEECTTTTCEEEEETTT--TEEEETTS------CEEECSEEEECCCEEECHH---HHHTTCCCT
T ss_pred HHHHHHHHHHHh-cCcEEEeCceEEEEEecccc--eEEEcCCC------cEEEeeEEEEecCcCCchh---Hhhcccccc
Confidence 666666666766 89999999998888875444 45777776 6899999999999999742 356677678
Q ss_pred CCceeeCCC-CccccCCCCcCCCEEEecccCCC---CCcHHHHHHHHHHHHHHHh----CCC-ccCCCCCccEEEecccc
Q 008714 391 RGFVPVDER-MRVIDANGNLVPHLYCIGDANGK---MMLAHAASAQGISVVEQVT----GRD-HVLNHLSIPAACFTHPE 461 (556)
Q Consensus 391 ~G~i~vd~~-l~~~~~~~t~~~~Vya~GD~~~~---~~~~~~A~~qg~~aa~~i~----g~~-~~~~~~~~p~~~~~~~~ 461 (556)
+|+|.||++ ||+ |++|||||+|||++. |++++.|.+||+++|+||+ |++ .+..|..+.++ +..+.
T Consensus 271 ~G~i~VD~~tl~~-----t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~~-~~~~~ 344 (401)
T 3vrd_B 271 SGWCPVDIRTFES-----SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYS-ILAPG 344 (401)
T ss_dssp TSSBCBCTTTCBB-----SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEEE-EEETT
T ss_pred CCCEEECCCccee-----cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEEE-EEecC
Confidence 999999987 776 899999999999753 5799999999999999997 443 23444444433 33445
Q ss_pred eeEecC
Q 008714 462 ISMVGL 467 (556)
Q Consensus 462 i~~vG~ 467 (556)
.+.+.+
T Consensus 345 ~~~~~~ 350 (401)
T 3vrd_B 345 YGISIA 350 (401)
T ss_dssp EEEEEE
T ss_pred CceEEE
Confidence 554443
No 80
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.97 E-value=1.4e-30 Score=274.57 Aligned_cols=301 Identities=19% Similarity=0.160 Sum_probs=197.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC--eEEEecC-CcCCccccccCCC------Cchh-------hHh-------hhHH
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEG-DVVGGTCVNRGCV------PSKA-------LLA-------VSGR 156 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk-~~~GG~~~~~g~i------ps~~-------l~~-------~~~~ 156 (556)
..+||+|||||++|+++|..|++.|. +|+|||+ +.+||.|.+.++. |+.. +.. ....
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35899999999999999999999999 9999999 6899999877652 2110 000 0000
Q ss_pred HHHhhh-----hhhhhhcCcccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----cCCEEEEc
Q 008714 157 MRELQS-----EHHMKALGLQVHAAGY-DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQKVKFG 225 (556)
Q Consensus 157 ~~~~~~-----~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~~~~v~~~ 225 (556)
++.+.. ...+..+.++...+.+ .... +..++...++..++.++.+..+ .+ +.+.|.+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~ 153 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHT-----------IQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYK 153 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHH-----------HHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEe
Confidence 000000 0011111111111111 2222 3333344444445556555433 11 23466665
Q ss_pred c---ce---EEEeCeEEEeCCC--CCCCCCCCCCC-------CCeEecccccccC-CCCCCeEEEEcCchhHHHHHHHHH
Q 008714 226 T---DN---IVTAKDIIIATGS--VPFVPKGIEVD-------GKTVITSDHALKL-EFVPDWIAIVGSGYIGLEFSDVYT 289 (556)
Q Consensus 226 ~---~~---~~~~d~lViAtG~--~p~~p~~~~~~-------~~~v~t~~~~~~~-~~~~~~v~VvG~G~~g~e~A~~l~ 289 (556)
+ +. ++.||+||+|||. .|++|+.++.+ +. ++++.+.... ...+++|+|||+|++|+|+|..|+
T Consensus 154 ~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~-v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~ 232 (447)
T 2gv8_A 154 GTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGS-VLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232 (447)
T ss_dssp ESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTS-EEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHT
T ss_pred ecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCcc-EEEecccCChhhcCCCEEEEEccCcCHHHHHHHHH
Confidence 4 55 7999999999998 67777655532 22 4444433332 346899999999999999999999
Q ss_pred hCCCe-EEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 290 ALGSE-VTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 290 ~~g~~-Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
+.|.+ |++++|++.+ +.+ .||.+ ...|+++..+ +. .|++.||. .++++|.||
T Consensus 233 ~~~~~~V~l~~r~~~~---------------l~~-~~i~~--~~~v~~~~~~--~~--~v~~~dG~-----~~~~~D~vi 285 (447)
T 2gv8_A 233 PVAKHPIYQSLLGGGD---------------IQN-ESLQQ--VPEITKFDPT--TR--EIYLKGGK-----VLSNIDRVI 285 (447)
T ss_dssp TTSCSSEEEECTTCCS---------------CBC-SSEEE--ECCEEEEETT--TT--EEEETTTE-----EECCCSEEE
T ss_pred HHhCCcEEEEeCCCCc---------------CCC-CCeEE--ecCeEEEecC--CC--EEEECCCC-----EeccCCEEE
Confidence 99999 9999998765 334 67875 4568888643 22 47777761 237899999
Q ss_pred EeeCCCCCCCC-----CCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q 008714 369 IATGRAPFTNG-----LGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 369 ~a~G~~p~~~~-----l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~ 443 (556)
+|+|++|++++ +.....++. .++.+.+|.+.++.. ++.|+||++||+.... +++.|..||+++|+++.|+
T Consensus 286 ~atG~~~~~~~l~~~~l~~~~~~i~-~~~~~~~~~~~~v~~---~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~~g~ 360 (447)
T 2gv8_A 286 YCTGYLYSVPFPSLAKLKSPETKLI-DDGSHVHNVYQHIFY---IPDPTLAFVGLALHVV-PFPTSQAQAAFLARVWSGR 360 (447)
T ss_dssp ECCCBCCCCCCHHHHSCCSTTTCCC-SSSSSCCSEETTTEE---TTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHHTTS
T ss_pred ECCCCCcCCCCCcccccccccCcee-cCCCccccccccccc---CCCCcEEEEecccccc-CchHHHHHHHHHHHHHcCC
Confidence 99999999988 532111222 244455555544322 5789999999998764 7899999999999999986
Q ss_pred C
Q 008714 444 D 444 (556)
Q Consensus 444 ~ 444 (556)
.
T Consensus 361 ~ 361 (447)
T 2gv8_A 361 L 361 (447)
T ss_dssp S
T ss_pred C
Confidence 3
No 81
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.97 E-value=9.4e-32 Score=281.85 Aligned_cols=284 Identities=17% Similarity=0.199 Sum_probs=190.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CeEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|||||||+||+++|.+|++++ .+|+|||+.. +. +.|..... .. |. .
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v-~~---------------g~------~ 53 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHL-AM---------------GW------R 53 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHH-HH---------------TC------S
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHH-hc---------------CC------C
Confidence 47999999999999999999975 8999999942 11 11110000 00 00 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC--CC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD--GK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~--~~ 254 (556)
+.. ++...+.+.+++.||+++.+.++.+| .++|.+.+|+++.||+||||||+++. ++.++.. ..
T Consensus 54 ~~~-----------~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~e~~~ 121 (430)
T 3hyw_A 54 KFE-----------DISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQEENST 121 (430)
T ss_dssp CGG-----------GSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHHHHSC
T ss_pred CHH-----------HhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcccCcC
Confidence 000 00001112334569999999887664 67899999999999999999999854 3333322 23
Q ss_pred eEecccccccCCC------CCCeEEEEcCch------hHHHHH----HHHHhCC----CeEEEEEeCCCCC---CCCCHH
Q 008714 255 TVITSDHALKLEF------VPDWIAIVGSGY------IGLEFS----DVYTALG----SEVTFIEALDQLM---PGFDPE 311 (556)
Q Consensus 255 ~v~t~~~~~~~~~------~~~~v~VvG~G~------~g~e~A----~~l~~~g----~~Vtli~~~~~ll---~~~d~~ 311 (556)
.+.+.+++..+.. ..+.++|+|++. .+.|++ ..+.+.| .+|++++..+.+. +..++.
T Consensus 122 ~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~ 201 (430)
T 3hyw_A 122 SICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGA 201 (430)
T ss_dssp CCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTT
T ss_pred CcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHH
Confidence 3445555443221 123455555542 233443 4455555 5789998776543 345677
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-C
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-Q 390 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~ 390 (556)
..+.+++.+++ +||++++++.+++++.+ . +.+.+. +++.+++++|++++++|.+|+.... .....+.. .
T Consensus 202 ~~~~l~~~l~~-~GV~~~~~~~v~~v~~~----~--~~~~~~--~g~~~~i~~d~vi~~~G~~~~~~~~-~~~~~l~~~~ 271 (430)
T 3hyw_A 202 SKRLVEDLFAE-RNIDWIANVAVKAIEPD----K--VIYEDL--NGNTHEVPAKFTMFMPSFQGPEVVA-SAGDKVANPA 271 (430)
T ss_dssp HHHHHHHHHHH-TTCEEECSCEEEEECSS----E--EEEECT--TSCEEEEECSEEEEECEEECCHHHH-TTCTTTBCTT
T ss_pred HHHHHHHHHHh-CCeEEEeCceEEEEeCC----c--eEEEee--CCCceEeecceEEEeccCCCchHHH-hcccccccCC
Confidence 78888999987 99999999999999643 1 334332 1234689999999999999975321 11122333 5
Q ss_pred CCceeeCCCCccccCCCCcCCCEEEecccCC------------CCCcHHHHHHHHHHHHHHHh
Q 008714 391 RGFVPVDERMRVIDANGNLVPHLYCIGDANG------------KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 391 ~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~------------~~~~~~~A~~qg~~aa~~i~ 441 (556)
+|+|.||++||+ |++|||||+|||+. .|++++.|.+||+++|+||+
T Consensus 272 ~g~i~vd~~lq~-----t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 272 NKMVIVNRCFQN-----PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp TCCBCCCTTSBC-----SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEecccccC-----CCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence 678999999997 89999999999975 25789999999999999997
No 82
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.97 E-value=8.1e-32 Score=282.57 Aligned_cols=283 Identities=17% Similarity=0.223 Sum_probs=198.4
Q ss_pred ccEEEECCChHHHHHHHHHHH--cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVE--KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~--~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+||+|||||++|+++|..|++ .|++|+|||+ +.+++. |..... . .+. .
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~-------~~~~~~--------~--------~g~------~ 53 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT-------PAFPHL--------A--------MGW------R 53 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG-------GGHHHH--------H--------HTC------S
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC-------CCcchh--------c--------cCc------c
Confidence 689999999999999999999 7899999999 444432 110000 0 000 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCC--C
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG--K 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~--~ 254 (556)
+. +.+...+...+++.|++++.+.+..++ .+.|.+.++.++.||+||+|||+.|..|.. +..+ .
T Consensus 54 ~~-----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~v~~~~g~~i~~d~liiAtG~~~~~pg~-~~~g~~~ 121 (430)
T 3h28_A 54 KF-----------EDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAE-GQEENST 121 (430)
T ss_dssp CG-----------GGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECCSB-THHHHSC
T ss_pred CH-----------HHHHHHHHHHHHhcCCEEEEEEEEEEECCCCEEEECCCcEEECCEEEEcCCcccccCCC-CCcCCcc
Confidence 00 000001112334569999998777654 457888888889999999999999887632 2111 2
Q ss_pred eEecccccccCCC------CCCeEEEEcCchhH------HHHH----HHHHhCC----CeEEEEEeCCCC----CCCCCH
Q 008714 255 TVITSDHALKLEF------VPDWIAIVGSGYIG------LEFS----DVYTALG----SEVTFIEALDQL----MPGFDP 310 (556)
Q Consensus 255 ~v~t~~~~~~~~~------~~~~v~VvG~G~~g------~e~A----~~l~~~g----~~Vtli~~~~~l----l~~~d~ 310 (556)
.+++.++...+.. .+++++|||+|+.+ +|+| ..+.+.| .+|+++++.+.+ ++.+.
T Consensus 122 ~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~- 200 (430)
T 3h28_A 122 SICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIG- 200 (430)
T ss_dssp CCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCST-
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcch-
Confidence 3445555443321 13467889987654 8877 5556677 589999998876 33333
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccC
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ 390 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~ 390 (556)
+..+.+++.+++ .||++++++.+++|+.+ + +++++.. ++.+++++|.|++++|++|+....++ ..++.++
T Consensus 201 ~~~~~l~~~l~~-~GV~i~~~~~v~~v~~~--~----v~~~~~~--~~g~~i~~D~vv~a~G~~~~~~l~~~-~~gl~~~ 270 (430)
T 3h28_A 201 ASKRLVEDLFAE-RNIDWIANVAVKAIEPD--K----VIYEDLN--GNTHEVPAKFTMFMPSFQGPEVVASA-GDKVANP 270 (430)
T ss_dssp THHHHHHHHHHH-TTCEEECSCEEEEECSS--E----EEEECTT--SCEEEEECSEEEEECEEECCHHHHTT-CTTTBCT
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEeCC--e----EEEEecC--CCceEEeeeEEEECCCCccchhHhhc-cccCcCC
Confidence 477888888887 89999999999999653 1 4454421 12368999999999999987542211 0355557
Q ss_pred CC-ceeeCCCCccccCCCCcCCCEEEecccCCC------------CCcHHHHHHHHHHHHHHHh
Q 008714 391 RG-FVPVDERMRVIDANGNLVPHLYCIGDANGK------------MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 391 ~G-~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~------------~~~~~~A~~qg~~aa~~i~ 441 (556)
+| +|.||+++|+ +++|||||+|||++. |++++.|..||+++|+||.
T Consensus 271 ~G~~i~Vd~~l~t-----~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~ 329 (430)
T 3h28_A 271 ANKMVIVNRCFQN-----PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp TTCCBCCCTTSBC-----SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEecCccccC-----CCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 89 9999999995 589999999999863 5789999999999999997
No 83
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.97 E-value=3.2e-31 Score=294.65 Aligned_cols=282 Identities=20% Similarity=0.217 Sum_probs=199.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
....+||+|||||+||++||..|+++|++|+|||+ +.+||.|.+..++|.+.-
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~-------------------------- 439 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE-------------------------- 439 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGG--------------------------
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHH--------------------------
Confidence 34568999999999999999999999999999999 789999887666653221
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC--------CCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV--------PFVPKG 248 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~--------p~~p~~ 248 (556)
+..+..+.....+.+. .....++++..+ +.+.+.++.++.||+||||||+. |..|++
T Consensus 440 ---~~~~~~~~~~~i~~~~-----~~~~~~v~i~~~-------~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~i 504 (729)
T 1o94_A 440 ---WSYHRDYRETQITKLL-----KKNKESQLALGQ-------KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPI 504 (729)
T ss_dssp ---GHHHHHHHHHHHHHHH-----HHSTTCEEECSC-------CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCC
T ss_pred ---HHHHHHHHHHHHHHhh-----cccCCceEEEeC-------eEEehhhccccCCCEEEEcCCCCcccccccCccCCCC
Confidence 1111112111111110 011125665433 23444455568999999999998 455655
Q ss_pred CCCC--CCeEecccccccCC-CCCCeEEEEc--CchhHHHHHHHHHhCCCeEEEEEeCCCCCCC--CCHHHHHHHHHHHh
Q 008714 249 IEVD--GKTVITSDHALKLE-FVPDWIAIVG--SGYIGLEFSDVYTALGSEVTFIEALDQLMPG--FDPEIGKLAQRVLI 321 (556)
Q Consensus 249 ~~~~--~~~v~t~~~~~~~~-~~~~~v~VvG--~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~--~d~~~~~~~~~~l~ 321 (556)
++.+ ...+++..+++... ..+++|+||| +|++|+|+|..|++.|.+||++++.+ +++. ++.. ...+.+.++
T Consensus 505 pG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~ 582 (729)
T 1o94_A 505 PGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLH 582 (729)
T ss_dssp TTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHH
T ss_pred CCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHH
Confidence 5554 44577776655433 3468999999 99999999999999999999999988 6552 3333 355667776
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEE--ecCCC-------------CCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIEL--IDAKT-------------KEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~--~~g~~-------------~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
+ .||++++++.+++|+.+ + +.++. .++.. .+++.++++|.||+|+|++|+++++ +..+
T Consensus 583 ~-~GV~i~~~~~v~~i~~~--~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~--~~l~ 655 (729)
T 1o94_A 583 E-LHVEELGDHFCSRIEPG--R--MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLW--NELK 655 (729)
T ss_dssp H-TTCEEECSEEEEEEETT--E--EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHH--HHHH
T ss_pred h-CCCEEEcCcEEEEEECC--e--EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHH--HHHh
Confidence 6 89999999999999742 2 33332 12210 0112349999999999999998743 2211
Q ss_pred cccCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q 008714 387 VVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 387 ~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~ 443 (556)
..+|+++| |++|+|||+|||++ +..+..|..||+.||.+|.+.
T Consensus 656 -------~~vd~~~~------t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 656 -------ARESEWAE------NDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp -------HTGGGTGG------GTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSS
T ss_pred -------hhcccccc------cCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhh
Confidence 13788898 68999999999997 567788999999999999864
No 84
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.97 E-value=6.1e-31 Score=291.28 Aligned_cols=273 Identities=20% Similarity=0.192 Sum_probs=204.9
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
+....+||+|||||+||++||..|+++|++|+|||+ +.+||.|....++|.+.
T Consensus 387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~-------------------------- 440 (690)
T 3k30_A 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLS-------------------------- 440 (690)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCG--------------------------
T ss_pred cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchh--------------------------
Confidence 344568999999999999999999999999999999 78999887544444211
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC--------CCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV--------PFVP 246 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~--------p~~p 246 (556)
++ ..+..++...+.+. +|+++.+. .+...+..++.||+||+|||+. |..|
T Consensus 441 ---~~-----------~~~~~~~~~~~~~~~gv~~~~~~-------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~ 499 (690)
T 3k30_A 441 ---AW-----------GRVKEYREAVLAELPNVEIYRES-------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499 (690)
T ss_dssp ---GG-----------GHHHHHHHHHHHTCTTEEEESSC-------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSS
T ss_pred ---HH-----------HHHHHHHHHHHHHcCCCEEEECC-------eecHHHHhhcCCCEEEEcCCCccccccccccCCC
Confidence 11 22333444455555 88888764 2333444568999999999998 4466
Q ss_pred CCCCCCCCeEecccccccCC-CCCCeEEEEc--CchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCC-HHHHHHHHHHHhC
Q 008714 247 KGIEVDGKTVITSDHALKLE-FVPDWIAIVG--SGYIGLEFSDVYTALGSEVTFIEALDQLMPGFD-PEIGKLAQRVLIN 322 (556)
Q Consensus 247 ~~~~~~~~~v~t~~~~~~~~-~~~~~v~VvG--~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d-~~~~~~~~~~l~~ 322 (556)
+.++.+...+++..+..... ..+++|+||| +|.+|+|+|..|.+.|.+|+++++.+.+++..+ +.....+.+.+++
T Consensus 500 ~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~ 579 (690)
T 3k30_A 500 ALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIE 579 (690)
T ss_dssp CCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHH
T ss_pred CCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHH
Confidence 66676666788777666543 3457899999 999999999999999999999999998877643 5556777888877
Q ss_pred CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCcc
Q 008714 323 PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRV 402 (556)
Q Consensus 323 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~ 402 (556)
.||++++++.+++++.+ + +.+..... ++.+++++|.||+|+|++||++++ +..+ ..+. +
T Consensus 580 -~GV~i~~~~~V~~i~~~--~--~~v~~~~~---~~~~~i~aD~VV~A~G~~p~~~l~--~~l~---~~~~-------~- 638 (690)
T 3k30_A 580 -NGVARVTDHAVVAVGAG--G--VTVRDTYA---SIERELECDAVVMVTARLPREELY--LDLV---ARRD-------A- 638 (690)
T ss_dssp -TTCEEEESEEEEEEETT--E--EEEEETTT---CCEEEEECSEEEEESCEEECCHHH--HHHH---HHHH-------H-
T ss_pred -CCCEEEcCcEEEEEECC--e--EEEEEccC---CeEEEEECCEEEECCCCCCChHHH--HHHh---hhhc-------c-
Confidence 89999999999999753 2 33433211 123689999999999999998743 2111 1111 4
Q ss_pred ccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q 008714 403 IDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~ 443 (556)
|+.|+|||+|||++.+ ....|..||+.||.||.+.
T Consensus 639 -----t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 639 -----GEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -----TSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred -----cCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence 7899999999999864 5556999999999999865
No 85
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.97 E-value=1.4e-30 Score=297.22 Aligned_cols=285 Identities=16% Similarity=0.211 Sum_probs=202.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..+||+||||||||++||..|++.|++|+|||+ +.+||+|.+ | | +.++. ..
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~--~-~-k~~i~------------------------~~ 178 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD--T-A-GEQID------------------------GM 178 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG--S-S-CCEET------------------------TE
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc--C-C-ccccC------------------------CC
Confidence 468999999999999999999999999999999 689999983 3 2 11110 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEE-ec-CC------------EEEE------ccceEEEeCeEEE
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTI-LG-PQ------------KVKF------GTDNIVTAKDIII 237 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~-~~-~~------------~v~~------~~~~~~~~d~lVi 237 (556)
.. .++...+.+.+.+. +++++.+..+. ++ .. .+.. .++.++.||+|||
T Consensus 179 ~~-----------~~~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVl 247 (965)
T 2gag_A 179 DS-----------SAWIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVL 247 (965)
T ss_dssp EH-----------HHHHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEE
T ss_pred CH-----------HHHHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEE
Confidence 00 01112222334443 88888775331 11 11 1111 1124799999999
Q ss_pred eCCCCCCCCCCCCCCCCeEeccccc---c-cCCC-CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHH
Q 008714 238 ATGSVPFVPKGIEVDGKTVITSDHA---L-KLEF-VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEI 312 (556)
Q Consensus 238 AtG~~p~~p~~~~~~~~~v~t~~~~---~-~~~~-~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~ 312 (556)
|||+.|+.|+.++.+...+++...+ . .... .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .
T Consensus 248 ATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~----~- 322 (965)
T 2gag_A 248 ATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA----A- 322 (965)
T ss_dssp CCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH----H-
T ss_pred CCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch----h-
Confidence 9999998887766655557665432 2 2222 348999999999999999999999999999999987753 1
Q ss_pred HHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEec--CCC-CCCCceEecCEEEEeeCCCCCCCCCCCccccccc
Q 008714 313 GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELID--AKT-KEPKDTLEVDAALIATGRAPFTNGLGLENINVVT 389 (556)
Q Consensus 313 ~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--g~~-~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~ 389 (556)
.+.+++ .||++++++.+++++.+++++...|++.+ ... +++.+++++|.|++++|++||++++. .
T Consensus 323 ----~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~-------~ 390 (965)
T 2gag_A 323 ----AAQAVA-DGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHS-------Q 390 (965)
T ss_dssp ----HHHHHH-TTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHH-------H
T ss_pred ----HHHHHh-CCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHH-------h
Confidence 345565 89999999999999874233444566654 100 01125799999999999999987431 2
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g 442 (556)
.+|.|.+|++++.... .|+.|+|||+|||++.+.+. .|..||++||.||++
T Consensus 391 ~~g~i~vd~~~~~~v~-~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 391 RQGKLDWDTTIHAFVP-ADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAAT 441 (965)
T ss_dssp TTCCEEEETTTTEEEE-CSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHH
T ss_pred CCCcEEEcCccccccc-CCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHH
Confidence 3577999998872100 16889999999999987765 899999999999973
No 86
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=2.8e-29 Score=265.99 Aligned_cols=320 Identities=15% Similarity=0.125 Sum_probs=199.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-----CeEEEecC-CcCCccccccCCCCchhhH-----------hhh---HHHHH
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-----LKTAIIEG-DVVGGTCVNRGCVPSKALL-----------AVS---GRMRE 159 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-----~~V~viEk-~~~GG~~~~~g~ips~~l~-----------~~~---~~~~~ 159 (556)
..+||+|||||++|+++|..|++.| .+|+|||+ +.+| |.....+|...+. ... .....
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 106 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY 106 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence 4589999999999999999999999 99999999 5555 2211111110000 000 00000
Q ss_pred hhhhhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Eec-----CC----EEEEccce-
Q 008714 160 LQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG-----PQ----KVKFGTDN- 228 (556)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~-----~~----~v~~~~~~- 228 (556)
+........+ ......... ..++..++....+..+++++.+..+ .++ .. .|.+.++.
T Consensus 107 l~~~~~~~~~-~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g 174 (463)
T 3s5w_A 107 LHKHDRLVDF-INLGTFYPC-----------RMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADG 174 (463)
T ss_dssp HHHTTCHHHH-HHHCCSCCB-----------HHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTS
T ss_pred hhhcCceeec-ccccCCCCC-----------HHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCC
Confidence 0000000000 000000011 1334445555556667888877632 221 21 45555544
Q ss_pred ---EEEeCeEEEeCCCCCCCCCC-CCCCC--CeEecccccccCCC------CCCeEEEEcCchhHHHHHHHHHhC--CCe
Q 008714 229 ---IVTAKDIIIATGSVPFVPKG-IEVDG--KTVITSDHALKLEF------VPDWIAIVGSGYIGLEFSDVYTAL--GSE 294 (556)
Q Consensus 229 ---~~~~d~lViAtG~~p~~p~~-~~~~~--~~v~t~~~~~~~~~------~~~~v~VvG~G~~g~e~A~~l~~~--g~~ 294 (556)
++.||+||+|||+.|.+|+. .++.+ ..+++.+....+.. .+++|+|||+|.+|+|+|..|.+. +.+
T Consensus 175 ~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~ 254 (463)
T 3s5w_A 175 EELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQ 254 (463)
T ss_dssp CEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEE
T ss_pred ceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCe
Confidence 89999999999999998873 34555 34455544333332 478999999999999999999999 899
Q ss_pred EEEEEeCCCCCCCC--------------------CHHHHHHHHHH-------------------------HhCCCceEEE
Q 008714 295 VTFIEALDQLMPGF--------------------DPEIGKLAQRV-------------------------LINPRKIDYH 329 (556)
Q Consensus 295 Vtli~~~~~ll~~~--------------------d~~~~~~~~~~-------------------------l~~~~gV~~~ 329 (556)
|++++|.+.++|.. +++....+.+. +....||+++
T Consensus 255 Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~ 334 (463)
T 3s5w_A 255 ADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFR 334 (463)
T ss_dssp EEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred EEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999887632 12222222222 1122589999
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC--CCCCCCcccccccCCCceeeCCCCccccCCC
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF--TNGLGLENINVVTQRGFVPVDERMRVIDANG 407 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~--~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~ 407 (556)
+++.|++++.++ ..+.+++.+.. .++..++++|.||+|+|++|+ .+++ +...... |.+.||+++|+... .
T Consensus 335 ~~~~v~~v~~~~--~~~~v~~~~~~-~g~~~~~~~D~Vv~AtG~~p~~~~~~l--~~l~~~~--g~i~v~~~~~~~~~-~ 406 (463)
T 3s5w_A 335 CMTTVERATATA--QGIELALRDAG-SGELSVETYDAVILATGYERQLHRQLL--EPLAEYL--GDHEIGRDYRLQTD-E 406 (463)
T ss_dssp TTEEEEEEEEET--TEEEEEEEETT-TCCEEEEEESEEEECCCEECCC-CTTT--GGGGGGB--C--CCCTTSBCCBC-T
T ss_pred eCCEEEEEEecC--CEEEEEEEEcC-CCCeEEEECCEEEEeeCCCCCCccchh--HHHHHHh--CCcccCcccccccC-C
Confidence 999999998753 33667776321 112346999999999999999 4443 3222222 78999999996321 1
Q ss_pred CcCCCEEEecccC-----CCCCcHHHHHHHHHHHHHHHh
Q 008714 408 NLVPHLYCIGDAN-----GKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 408 t~~~~Vya~GD~~-----~~~~~~~~A~~qg~~aa~~i~ 441 (556)
...|+|||+|||. ..+.+...|.+++.++..++.
T Consensus 407 ~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 407 RCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp TBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 2357899999995 336788899999998877664
No 87
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.96 E-value=5.4e-29 Score=267.03 Aligned_cols=301 Identities=17% Similarity=0.162 Sum_probs=206.9
Q ss_pred CccEEEECCChHHHHHHHHHH-HcCCeEEEecC-CcCCcccccc---CC---CCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAV-EKGLKTAIIEG-DVVGGTCVNR---GC---VPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~-~~g~~V~viEk-~~~GG~~~~~---g~---ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
++||+|||||++|+++|..|+ +.|.+|+|||+ +.+||+|... +| +|++.+..... . .....+++.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~--~-----~~~~~~~~~ 80 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFD--R-----DLLQESTWK 80 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSC--H-----HHHHHCCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccc--c-----ccccCCCCc
Confidence 589999999999999999999 89999999999 8899999743 44 45444332210 0 000112221
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCc--EEEeceEE-Ee--c----CCEEEEccceEEEeCeEEEeCC--C
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGV--DILTGVGT-IL--G----PQKVKFGTDNIVTAKDIIIATG--S 241 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~-~~--~----~~~v~~~~~~~~~~d~lViAtG--~ 241 (556)
. ...+. .++..++...+++.++ +++.+..+ .. + .+.|.+.+|+++.||+||+||| +
T Consensus 81 ~--~~~~~-----------~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s 147 (540)
T 3gwf_A 81 T--TYITQ-----------PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS 147 (540)
T ss_dssp B--SEEEH-----------HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred c--cCCCH-----------HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence 1 11223 3344445555566676 56655432 11 1 2477788888899999999999 5
Q ss_pred CCCCCCCCC---CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CCCCCCHHHHHHHH
Q 008714 242 VPFVPKGIE---VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDPEIGKLAQ 317 (556)
Q Consensus 242 ~p~~p~~~~---~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll~~~d~~~~~~~~ 317 (556)
.|..|++++ +.+..+++..+.......+++|+|||+|.+|+|+|..|++.+.+||+++|.++ ++|.+++++.+..+
T Consensus 148 ~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~ 227 (540)
T 3gwf_A 148 AINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQI 227 (540)
T ss_dssp SBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHH
T ss_pred cCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHH
Confidence 777776554 45667788877777777899999999999999999999999999999999998 45554432222111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 008714 318 RVL----------------------------------------------------------------------------- 320 (556)
Q Consensus 318 ~~l----------------------------------------------------------------------------- 320 (556)
+.+
T Consensus 228 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (540)
T 3gwf_A 228 AEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKV 307 (540)
T ss_dssp HHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 111
Q ss_pred ---------------------------------hCCCceEEEc--CceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 321 ---------------------------------INPRKIDYHT--GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 321 ---------------------------------~~~~gV~~~~--~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
.+ .+|+++. +..|++|+++ .|.+.|| +++++|
T Consensus 308 ~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~-~nV~lv~~~~~~I~~it~~------gv~~~dG------~~~~~D 374 (540)
T 3gwf_A 308 AEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNR-PNVEAVAIKENPIREVTAK------GVVTEDG------VLHELD 374 (540)
T ss_dssp HHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGS-TTEEEEETTTSCEEEECSS------EEEETTC------CEEECS
T ss_pred HHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcC-CCEEEEeCCCCCccEEecC------eEEcCCC------CEEECC
Confidence 12 5788875 6788888753 2778887 689999
Q ss_pred EEEEeeCCCCCCCCCCCcccccccCCC---------ceeeCCCCccccCCCCcCCCEEEe-cccCCCCCcHHHHHHHHHH
Q 008714 366 AALIATGRAPFTNGLGLENINVVTQRG---------FVPVDERMRVIDANGNLVPHLYCI-GDANGKMMLAHAASAQGIS 435 (556)
Q Consensus 366 ~vi~a~G~~p~~~~l~l~~~~~~~~~G---------~i~vd~~l~~~~~~~t~~~~Vya~-GD~~~~~~~~~~A~~qg~~ 435 (556)
+||+|||+++++..+ ...++.-.+| .+.....+.+ .+.||+|++ |..+........+..|+++
T Consensus 375 vIV~ATGf~~~~~~~--~~~~i~g~~G~~l~~~w~~~~~~y~g~~v-----~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~ 447 (540)
T 3gwf_A 375 VLVFATGFDAVDGNY--RRIEIRGRDGLHINDHWDGQPTSYLGVST-----ANFPNWFMVLGPNGPFTNLPPSIETQVEW 447 (540)
T ss_dssp EEEECCCBSCSSHHH--HTSEEECGGGCBHHHHTSSSCCCBTTTBC-----TTCTTEEESSCSSCBCSCHHHHHHHHHHH
T ss_pred EEEECCccCccccCc--CcceEECCCCcCHHHhhccChhhcccccc-----CCCCceEEEecCCCCCccHHHHHHHHHHH
Confidence 999999999987322 1111211122 2333333554 789999999 8766555667788899999
Q ss_pred HHHHHh
Q 008714 436 VVEQVT 441 (556)
Q Consensus 436 aa~~i~ 441 (556)
+++.|.
T Consensus 448 i~~~i~ 453 (540)
T 3gwf_A 448 ISDTIG 453 (540)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988774
No 88
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.96 E-value=4.3e-29 Score=275.76 Aligned_cols=260 Identities=22% Similarity=0.312 Sum_probs=194.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
....+||+|||||+||++||..|++.|++|+|||+ +.+||+|.+..++|.+..
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~-------------------------- 423 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEE-------------------------- 423 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTT--------------------------
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHH--------------------------
Confidence 34568999999999999999999999999999999 789998875555543211
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEE-EeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIV-TAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~-~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
. .++..++...+++.||+++.+..+.. ..+ .||+||||||+.|+.|+.++.+...
T Consensus 424 ---~-----------~~~~~~~~~~~~~~gv~~~~~~~v~~----------~~~~~~d~lviAtG~~p~~~~i~G~~~~~ 479 (671)
T 1ps9_A 424 ---F-----------YETLRYYRRMIEVTGVTLKLNHTVTA----------DQLQAFDETILASGIVPRTPPIDGIDHPK 479 (671)
T ss_dssp ---H-----------HHHHHHHHHHHHHHTCEEEESCCCCS----------SSSCCSSEEEECCCEEECCCCCBTTTSTT
T ss_pred ---H-----------HHHHHHHHHHHHHcCCEEEeCcEecH----------HHhhcCCEEEEccCCCcCCCCCCCCCCCc
Confidence 0 11122344456667999988763211 234 8999999999999988877765555
Q ss_pred EecccccccC-CCCCCeEEEEcCchhHHHHHHHHHhCCC-------------------------------------eEEE
Q 008714 256 VITSDHALKL-EFVPDWIAIVGSGYIGLEFSDVYTALGS-------------------------------------EVTF 297 (556)
Q Consensus 256 v~t~~~~~~~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~-------------------------------------~Vtl 297 (556)
+++..+.... ...+++|+|||+|++|+|+|..|++.|. +|++
T Consensus 480 v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l 559 (671)
T 1ps9_A 480 VLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVM 559 (671)
T ss_dssp EEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEE
T ss_pred EeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEE
Confidence 7666554443 3457999999999999999999998773 5677
Q ss_pred EEeCCCCCC-CCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 298 IEALDQLMP-GFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 298 i~~~~~ll~-~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+++.+..+. .+++.....+.+.|++ .||++++++.+++++. ++ +.++ .+| +.+++++|.||+|+|++||
T Consensus 560 ~~~~~~~l~~~l~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~--~~--v~~~-~~G----~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 560 LQRKASKPGQGLGKTTGWIHRTTLLS-RGVKMIPGVSYQKIDD--DG--LHVV-ING----ETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp ECSSCSCTTTTSCTTTHHHHHHHHHH-TTCEEECSCEEEEEET--TE--EEEE-ETT----EEEEECCSEEEECCCEEEC
T ss_pred EEecchhhccccccccHHHHHHHHHh-cCCEEEeCcEEEEEeC--Ce--EEEe-cCC----eEEEEeCCEEEECCCcccc
Confidence 877766554 3777777778888887 8999999999999974 22 3333 444 2257999999999999999
Q ss_pred CCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCCC-CcHHHHHHHHHHHHHHH
Q 008714 377 TNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM-MLAHAASAQGISVVEQV 440 (556)
Q Consensus 377 ~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i 440 (556)
++++. . ++ ...++||++|||+... +.+..|++||..+|.||
T Consensus 630 ~~l~~--~---------------l~------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 630 RALAQ--P---------------LI------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CTTHH--H---------------HH------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHH--H---------------HH------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 87541 1 11 1236899999998754 47999999999999986
No 89
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.96 E-value=1.3e-27 Score=256.64 Aligned_cols=306 Identities=18% Similarity=0.233 Sum_probs=195.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|.+|++.|++|+|||+ +.+||+|. ..++|..........+...........+.+ .....
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~--~~~~~ 84 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWEW--SENFA 84 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCCC--SBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-cCCCCceeecCchhhcccccCcccccCCCc--cccCC
Confidence 358999999999999999999999999999999 78999995 455664322111111110000000001111 12222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCc--EEEeceEE-E---ec---CCEEEEccceEEEeCeEEEeCC--CCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGV--DILTGVGT-I---LG---PQKVKFGTDNIVTAKDIIIATG--SVPFVPK 247 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~-~---~~---~~~v~~~~~~~~~~d~lViAtG--~~p~~p~ 247 (556)
+...+.. ++...+++.++ .+..+..+ . .+ .+.|.+.+|+++.||+||+||| +.|..|+
T Consensus 85 ~~~ei~~-----------yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ 153 (545)
T 3uox_A 85 SQPEMLR-----------YVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPD 153 (545)
T ss_dssp BHHHHHH-----------HHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CC
T ss_pred CHHHHHH-----------HHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCC
Confidence 3433333 33344444454 44444321 1 11 3478888888999999999999 7788776
Q ss_pred CCC---CCCCeEeccccccc-------CCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CCCCCCH----HH
Q 008714 248 GIE---VDGKTVITSDHALK-------LEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDP----EI 312 (556)
Q Consensus 248 ~~~---~~~~~v~t~~~~~~-------~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll~~~d~----~~ 312 (556)
+++ +.+..+++..+... ....+++|+|||+|.+|+|+|..|++.+.+||+++|.++ ++|.+++ ..
T Consensus 154 ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~ 233 (545)
T 3uox_A 154 IKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEK 233 (545)
T ss_dssp CTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHH
T ss_pred CCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHH
Confidence 554 45667788777666 666789999999999999999999999999999999998 4554332 21
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 008714 313 GKLAQ--------------------------------------------------------------------------- 317 (556)
Q Consensus 313 ~~~~~--------------------------------------------------------------------------- 317 (556)
.+.+.
T Consensus 234 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (545)
T 3uox_A 234 MDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKI 313 (545)
T ss_dssp HHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11110
Q ss_pred --------------------------------HHHhCCCceEEEc--CceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 318 --------------------------------RVLINPRKIDYHT--GVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 318 --------------------------------~~l~~~~gV~~~~--~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
+.|.+ .+|+++. +..|++|++. | |.+.|| +++
T Consensus 314 ~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~-~nV~lv~~~~~~I~~it~~--g----v~~~dG-------~~~ 379 (545)
T 3uox_A 314 RQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNR-DNVHLVDIREAPIQEVTPE--G----IKTADA-------AYD 379 (545)
T ss_dssp HHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTS-TTEEEEETTTSCEEEEETT--E----EEESSC-------EEE
T ss_pred HHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcC-CCEEEEecCCCCceEEccC--e----EEeCCC-------eee
Confidence 01111 3777775 6778888753 2 666553 799
Q ss_pred cCEEEEeeCCCCCCCCCCCcccccccCCCceeeCC----------CCccccCCCCcCCCEEEecccC---CCCCcHHHHH
Q 008714 364 VDAALIATGRAPFTNGLGLENINVVTQRGFVPVDE----------RMRVIDANGNLVPHLYCIGDAN---GKMMLAHAAS 430 (556)
Q Consensus 364 ~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~----------~l~~~~~~~t~~~~Vya~GD~~---~~~~~~~~A~ 430 (556)
+|+||+|||+.+++..+ ....+.-.+| +.+++ -+.+ .++||+|.+.--. +..+....+.
T Consensus 380 ~D~IV~ATGf~~~~~~~--~~~~i~g~~G-~~l~~~w~~~~~~y~g~~~-----~gfPN~f~~~gp~~~~~~~s~~~~~e 451 (545)
T 3uox_A 380 LDVIIYATGFDAVTGSL--DRIDIRGKDN-VRLIDAWAEGPSTYLGLQA-----RGFPNFFTLVGPHNGSTFCNVGVCGG 451 (545)
T ss_dssp CSEEEECCCCBSSSCSC--TTSEEECGGG-CBHHHHTTTSCCCBTTTBC-----TTCTTEEECSSGGGTGGGSCHHHHHH
T ss_pred cCEEEECCccccccccC--CCceEECCCC-ccHHHhhccccceeecccc-----CCCCcEEEEeCCCCCCccccHHHHHH
Confidence 99999999999976543 2222222233 33332 2333 6889999985432 2346677788
Q ss_pred HHHHHHHHHHh
Q 008714 431 AQGISVVEQVT 441 (556)
Q Consensus 431 ~qg~~aa~~i~ 441 (556)
.|++++++.|.
T Consensus 452 ~~~~~i~~~i~ 462 (545)
T 3uox_A 452 LQAEWVLRMIS 462 (545)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 90
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.95 E-value=3.1e-27 Score=253.93 Aligned_cols=300 Identities=17% Similarity=0.230 Sum_probs=198.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc---cCC---CCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN---RGC---VPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~---~g~---ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
.++||+|||||++|+++|.+|++.|++|+|||+ +.+||+|.. .|| +|++.+...... . ....+.+.
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~--~-----~~~~~~~~ 92 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP--E-----LEQEWNWS 92 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCH--H-----HHHHCCCS
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhccccccc--c-----cccCCCCc
Confidence 458999999999999999999999999999999 899999973 355 666554332110 0 00112221
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCc--EEEeceEE-E---ec---CCEEEEccceEEEeCeEEEeCC--C
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGV--DILTGVGT-I---LG---PQKVKFGTDNIVTAKDIIIATG--S 241 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~-~---~~---~~~v~~~~~~~~~~d~lViAtG--~ 241 (556)
....+. .++..++...+++.++ .++.+..+ . .+ .+.|.+.+|+++.||+||+||| +
T Consensus 93 --~~~~~~-----------~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s 159 (549)
T 4ap3_A 93 --EKYATQ-----------PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS 159 (549)
T ss_dssp --SSSCBH-----------HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred --cCCCCH-----------HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence 112233 3344445555566666 56655322 1 12 2478888888899999999999 7
Q ss_pred CCCCCCCCC---CCCCeEeccccc-ccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-CCCCCHHHHHHH
Q 008714 242 VPFVPKGIE---VDGKTVITSDHA-LKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPGFDPEIGKLA 316 (556)
Q Consensus 242 ~p~~p~~~~---~~~~~v~t~~~~-~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-l~~~d~~~~~~~ 316 (556)
.|..|++++ +.+..+++..+. ...+..+++|+|||+|.+|+|+|..|++.+.+||+++|.+++ +|.+++++.+..
T Consensus 160 ~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~ 239 (549)
T 4ap3_A 160 NANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDAT 239 (549)
T ss_dssp ECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHH
T ss_pred CCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHH
Confidence 788776554 446667777665 355667899999999999999999999999999999999984 555443322111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 008714 317 QRV----------------------------------------------------------------------------- 319 (556)
Q Consensus 317 ~~~----------------------------------------------------------------------------- 319 (556)
++.
T Consensus 240 ~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (549)
T 4ap3_A 240 RAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIR 319 (549)
T ss_dssp HHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 111
Q ss_pred ---------------------------------HhCCCceEEE--cCceEEEEEecCCCCeEEEEEecCCCCCCCceEec
Q 008714 320 ---------------------------------LINPRKIDYH--TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 320 ---------------------------------l~~~~gV~~~--~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
+.+ .+|+++ ....|++|+++ | |.+.|| ++++
T Consensus 320 ~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~-~~V~lvd~~~~~I~~it~~--g----v~~~dG-------~~~~ 385 (549)
T 4ap3_A 320 AVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNR-DNVELVDLRSTPIVGMDET--G----IVTTGA-------HYDL 385 (549)
T ss_dssp HHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGS-TTEEEEETTTSCEEEEETT--E----EEESSC-------EEEC
T ss_pred HHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcC-CCEEEEeCCCCCceEEeCC--c----EEeCCC-------ceec
Confidence 111 367776 24678888752 2 666553 7999
Q ss_pred CEEEEeeCCCCCCCCCCCcccccccCCCceeeCC----------CCccccCCCCcCCCEEEecccC---CCCCcHHHHHH
Q 008714 365 DAALIATGRAPFTNGLGLENINVVTQRGFVPVDE----------RMRVIDANGNLVPHLYCIGDAN---GKMMLAHAASA 431 (556)
Q Consensus 365 D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~----------~l~~~~~~~t~~~~Vya~GD~~---~~~~~~~~A~~ 431 (556)
|+||+|||+++++..+ ...++.-.+| +.+++ -+.+ .+.||+|.+.--. +.......+..
T Consensus 386 D~iI~ATGf~~~~~~~--~~~~i~g~~G-~~l~~~w~~~~~~y~g~~~-----~gfPN~f~~~Gp~~~~~~~s~~~~~e~ 457 (549)
T 4ap3_A 386 DMIVLATGFDAMTGSL--DKLEIVGRGG-RTLKETWAAGPRTYLGLGI-----DGFPNFFNLTGPGSPSVLANMVLHSEL 457 (549)
T ss_dssp SEEEECCCEEESSTTG--GGSEEECGGG-CBHHHHTTTSCCCBTTTBC-----TTCTTEEETTCTTSCGGGSCHHHHHHH
T ss_pred CEEEECCccccccccc--CceeEECCCC-cCHHHhhccchhhcccccc-----CCCCcEEEEeCCCCCCcCccHHHHHHH
Confidence 9999999999987433 2222221222 33432 2333 6789999984332 23456777888
Q ss_pred HHHHHHHHHh
Q 008714 432 QGISVVEQVT 441 (556)
Q Consensus 432 qg~~aa~~i~ 441 (556)
|++++++.|.
T Consensus 458 ~~~~i~~~i~ 467 (549)
T 4ap3_A 458 HVDWVADAIA 467 (549)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888774
No 91
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.95 E-value=6.9e-27 Score=251.94 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=194.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|..|++.|++|+|||+ +.+||+|. .+|+|...+......+...........+.+. ....
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~--~~~~ 91 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEWNWT--ERYA 91 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHCCCC--BSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-ccCCCceeecccccccccccChhhhhccCcc--cccC
Confidence 358999999999999999999999999999999 78999996 3355543221100000000000001111111 1122
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC--cEEEeceEE----Eec---CCEEEEccceEEEeCeEEEeCC--CCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALG--VDILTGVGT----ILG---PQKVKFGTDNIVTAKDIIIATG--SVPFVPK 247 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~----~~~---~~~v~~~~~~~~~~d~lViAtG--~~p~~p~ 247 (556)
+...+..++. ...++.+ +++..+..+ ..+ .+.|.+.+|+++.||+||+||| +.|..|+
T Consensus 92 ~~~~i~~yl~-----------~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~ 160 (542)
T 1w4x_A 92 SQPEILRYIN-----------FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPN 160 (542)
T ss_dssp BHHHHHHHHH-----------HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCC
T ss_pred CHHHHHHHHH-----------HHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCC
Confidence 3333333333 3333333 445544322 122 2567777788899999999999 4677776
Q ss_pred CCC---CCCCeEecccccc-cCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-CCCCC----HHHHHH---
Q 008714 248 GIE---VDGKTVITSDHAL-KLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPGFD----PEIGKL--- 315 (556)
Q Consensus 248 ~~~---~~~~~v~t~~~~~-~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-l~~~d----~~~~~~--- 315 (556)
.++ +.|..+++..+.. ..+..+|+|+|||+|.+|+|++..|++.+.+|+++.|.+.+ +|.++ ++..+.
T Consensus 161 i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~ 240 (542)
T 1w4x_A 161 FPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKK 240 (542)
T ss_dssp CTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHT
T ss_pred CCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHh
Confidence 544 4566677776552 35567899999999999999999999999999999998876 34322 111100
Q ss_pred --------------------------------------------------------------------HHH---------
Q 008714 316 --------------------------------------------------------------------AQR--------- 318 (556)
Q Consensus 316 --------------------------------------------------------------------~~~--------- 318 (556)
+.+
T Consensus 241 ~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (542)
T 1w4x_A 241 RYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDP 320 (542)
T ss_dssp THHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSH
T ss_pred hCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCH
Confidence 000
Q ss_pred ----HHhC---------------------CCceEEE--cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEee
Q 008714 319 ----VLIN---------------------PRKIDYH--TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIAT 371 (556)
Q Consensus 319 ----~l~~---------------------~~gV~~~--~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~ 371 (556)
.|.. ..+|+++ .+..|++++++ .|.+.| +++++|+||+||
T Consensus 321 ~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-------~~~~~D~ii~at 387 (542)
T 1w4x_A 321 EVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-------REYELDSLVLAT 387 (542)
T ss_dssp HHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-------CEEECSEEEECC
T ss_pred HHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-------eEEecCEEEEcC
Confidence 0100 1346665 35567777542 255543 479999999999
Q ss_pred CCCCCCCCCCCcccccccCCCceeeC-------C--CCccccCCCCcCCCEEEe-cccCC--CCCcHHHHHHHHHHHHHH
Q 008714 372 GRAPFTNGLGLENINVVTQRGFVPVD-------E--RMRVIDANGNLVPHLYCI-GDANG--KMMLAHAASAQGISVVEQ 439 (556)
Q Consensus 372 G~~p~~~~l~l~~~~~~~~~G~i~vd-------~--~l~~~~~~~t~~~~Vya~-GD~~~--~~~~~~~A~~qg~~aa~~ 439 (556)
|+.+++..+ ...++...+|.+..| . .+.+ ...||+|++ |+.+. .+.....+..|+++++++
T Consensus 388 G~~~~~~~~--~~~~i~g~~G~~l~~~w~~~~~~y~~~~v-----~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~ 460 (542)
T 1w4x_A 388 GFDALTGAL--FKIDIRGVGNVALKEKWAAGPRTYLGLST-----AGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDH 460 (542)
T ss_dssp CCCCTTHHH--HTSEEECGGGCBHHHHTTTSCCCBTTTBC-----TTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHH
T ss_pred CccccccCc--CceeeECCCCCCHHHhhcCchheeccccc-----CCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHH
Confidence 999986543 223333344433222 1 2444 678999998 99853 456778999999999999
Q ss_pred Hh
Q 008714 440 VT 441 (556)
Q Consensus 440 i~ 441 (556)
|.
T Consensus 461 i~ 462 (542)
T 1w4x_A 461 IA 462 (542)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 92
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.7e-27 Score=250.14 Aligned_cols=251 Identities=24% Similarity=0.246 Sum_probs=179.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.++||+|||||++|+++|.+|++. ++|+|||+ +.+||.+..... ..++++.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~----------------------~~~g~~~----- 158 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGI----------------------KQEGFNK----- 158 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCS----------------------EETTTTE-----
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeecccc----------------------ccCCCCC-----
Confidence 458999999999999999999999 99999999 678888763210 0011110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE---EecCCEEEE---ccce--EEEeCeEEEeCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKF---GTDN--IVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~v~~---~~~~--~~~~d~lViAtG~~p~~p~~~~ 250 (556)
+. .++..++.+.+ ..+++++.+... ..+...+.+ .+++ ++.||+||+|||+.|+.|+.++
T Consensus 159 ~~-----------~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g 226 (493)
T 1y56_A 159 DS-----------RKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFEN 226 (493)
T ss_dssp EH-----------HHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTT
T ss_pred CH-----------HHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCC
Confidence 11 11222222223 458888776543 222222222 3333 6999999999999998887666
Q ss_pred CCCCeEecccccccC-----CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCc
Q 008714 251 VDGKTVITSDHALKL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 251 ~~~~~v~t~~~~~~~-----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~g 325 (556)
.+...+++.+++..+ ...+++++|||+|++|+| +.+++ .|
T Consensus 227 ~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~~l~~-~G 271 (493)
T 1y56_A 227 NDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------QELER-WG 271 (493)
T ss_dssp TTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------HHHHH-HT
T ss_pred CCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------HHHHh-CC
Confidence 555557766554322 134589999999999998 33444 79
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc---CCCcee-eCCCCc
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT---QRGFVP-VDERMR 401 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~---~~G~i~-vd~~l~ 401 (556)
|++++++.+++++.+ ++...+.+.+| .++++|.|++++|++|+++++ +..++.. ++|+|. ||+++|
T Consensus 272 V~v~~~~~v~~i~~~--~~v~~v~~~~g------~~i~aD~Vv~a~G~~p~~~l~--~~~g~~~~~~~~g~i~~vd~~~~ 341 (493)
T 1y56_A 272 IDYVHIPNVKRVEGN--EKVERVIDMNN------HEYKVDALIFADGRRPDINPI--TQAGGKLRFRRGYYSPVLDEYHR 341 (493)
T ss_dssp CEEEECSSEEEEECS--SSCCEEEETTC------CEEECSEEEECCCEEECCHHH--HHTTCCEEEETTEEEECCCTTSE
T ss_pred cEEEeCCeeEEEecC--CceEEEEeCCC------eEEEeCEEEECCCcCcCchHH--HhcCCCccccCCceeeccccccC
Confidence 999999999999864 33445666665 689999999999999998754 3344332 578887 899987
Q ss_pred cccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q 008714 402 VIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 402 ~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~ 443 (556)
+.|+|||+|||++. .++..|..||++||.||.+.
T Consensus 342 -------s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 342 -------IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp -------EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHHH
Confidence 46999999999975 57889999999999999853
No 93
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.87 E-value=4e-20 Score=196.84 Aligned_cols=223 Identities=21% Similarity=0.203 Sum_probs=139.6
Q ss_pred CEEEEcc-----ceEEEeCeEEEeCCCCCCCCCCCCCCCCeEeccccccc------CCCCCCeEEEEcCchhHHHHHHHH
Q 008714 220 QKVKFGT-----DNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALK------LEFVPDWIAIVGSGYIGLEFSDVY 288 (556)
Q Consensus 220 ~~v~~~~-----~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~------~~~~~~~v~VvG~G~~g~e~A~~l 288 (556)
++|.+.+ ..++.+++||+|||..|.+|+...+.+..+|++++... ....+|+|+|||+|.+|+|++..|
T Consensus 186 ~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L 265 (501)
T 4b63_A 186 FTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDL 265 (501)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHH
T ss_pred EEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHH
Confidence 5666643 24689999999999999999888888887888776543 235689999999999999999999
Q ss_pred HhC--CCeEEEEEeCCCCCCC---------CCHHHHHHH-------------------------------H-----HHHh
Q 008714 289 TAL--GSEVTFIEALDQLMPG---------FDPEIGKLA-------------------------------Q-----RVLI 321 (556)
Q Consensus 289 ~~~--g~~Vtli~~~~~ll~~---------~d~~~~~~~-------------------------------~-----~~l~ 321 (556)
++. +.+|+++.|++.+.|. ++++..+.+ . +.+.
T Consensus 266 ~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~ 345 (501)
T 4b63_A 266 QKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVK 345 (501)
T ss_dssp HHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccC
Confidence 864 6899999999876543 122211110 0 0010
Q ss_pred C----CCceEEEcCceEEEEEecCCCCeEEEEEecC------CCCCCCceEecCEEEEeeCCCCCCC--CCCCcccccc-
Q 008714 322 N----PRKIDYHTGVFATKITPAKDGKPVTIELIDA------KTKEPKDTLEVDAALIATGRAPFTN--GLGLENINVV- 388 (556)
Q Consensus 322 ~----~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g------~~~~~~~~i~~D~vi~a~G~~p~~~--~l~l~~~~~~- 388 (556)
. .....+..+..+..+........+.+..... ...++.+++++|.||+|||++|+.. ++... ..+.
T Consensus 346 ~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~-~~l~~ 424 (501)
T 4b63_A 346 NPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKV-QHLRP 424 (501)
T ss_dssp CSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGG-GGGSS
T ss_pred CCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchh-hhcCc
Confidence 0 0122455566666665443333344433211 0112236899999999999999864 12111 1122
Q ss_pred cCCCceeeCCCCccccCCC--CcCCCEEEecccC-----CCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 389 TQRGFVPVDERMRVIDANG--NLVPHLYCIGDAN-----GKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 389 ~~~G~i~vd~~l~~~~~~~--t~~~~Vya~GD~~-----~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
+..|.+.|+.++++.-..+ ...++||+.|-+- +.+.|...|.+.|+++ +.|+|+.
T Consensus 425 d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~-~~l~g~~ 486 (501)
T 4b63_A 425 TGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV-QSIFGEQ 486 (501)
T ss_dssp TTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH-HHHHHHH
T ss_pred CcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH-HHHhcch
Confidence 2567788888766521110 2346799999542 3366777888877654 5566543
No 94
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.86 E-value=2.7e-21 Score=177.44 Aligned_cols=151 Identities=18% Similarity=0.264 Sum_probs=126.7
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---------CCC-----CHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---------PGF-----DPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---------~~~-----d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+++|||+|++|+++|..|++.|.+|+++++.+.++ |.+ ++++.+.+.+.+++ .||+++.+ ++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~v~~~-~v~~ 80 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARR-YGAEVRPG-VVKG 80 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHH-TTCEEEEC-CCCE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHH-cCCEEEeC-EEEE
Confidence 69999999999999999999999999999988766 334 47888888888887 89999999 9999
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
++.++++ +.+++.++ ++++|.||+|+|..|+.. +..++..++|+|.||+++| |+.|+|||+
T Consensus 81 i~~~~~~--~~v~~~~g-------~i~ad~vI~A~G~~~~~~----~~~g~~~~~g~i~vd~~~~------t~~~~i~a~ 141 (180)
T 2ywl_A 81 VRDMGGV--FEVETEEG-------VEKAERLLLCTHKDPTLP----SLLGLTRRGAYIDTDEGGR------TSYPRVYAA 141 (180)
T ss_dssp EEECSSS--EEEECSSC-------EEEEEEEEECCTTCCHHH----HHHTCCEETTEECCCTTCB------CSSTTEEEC
T ss_pred EEEcCCE--EEEEECCC-------EEEECEEEECCCCCCCcc----ccCCCCccCceEEeCCCCC------cCCCCEEEe
Confidence 9875333 55655432 799999999999999641 3334444588999999999 789999999
Q ss_pred cccCCCCC-cHHHHHHHHHHHHHHHhC
Q 008714 417 GDANGKMM-LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 417 GD~~~~~~-~~~~A~~qg~~aa~~i~g 442 (556)
|||++.+. +++.|..||++||.||.+
T Consensus 142 GD~~~~~~~~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 142 GVARGKVPGHAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp GGGGTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ecccCcchhhHHHHHHhHHHHHHHHHH
Confidence 99998876 999999999999999985
No 95
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.82 E-value=1.3e-21 Score=206.84 Aligned_cols=305 Identities=15% Similarity=0.188 Sum_probs=173.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccc----------cccCCCCchhhHhhh---------HHHH-----
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTC----------VNRGCVPSKALLAVS---------GRMR----- 158 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~----------~~~g~ips~~l~~~~---------~~~~----- 158 (556)
||+|||||++|+++|..|++.|.+|+||||...+|.. .+.++.|.+.+.... ...+
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 7999999999999999999999999999997445542 222233332221110 0000
Q ss_pred HhhhhhhhhhcCccccc-----cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe--cCCEE---EEc-cc
Q 008714 159 ELQSEHHMKALGLQVHA-----AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GPQKV---KFG-TD 227 (556)
Q Consensus 159 ~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~v---~~~-~~ 227 (556)
.......+..+|++... .....+............+...+.+.+++.|++++.+..... +...+ .+. .+
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~l~~~~~~v~Gv~v~~~~ 160 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEKRG 160 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEEEEEEETTEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEeCCEEEEEEEEeCC
Confidence 00111233445544321 000000000000011234445556666678999998863222 33333 332 23
Q ss_pred eEEEeCeEEEeCCCCCCCCCCC----CCCCCeEeccc----ccccCCCCC--CeEEEEcCchhHHHHHHHHHhCCCeEEE
Q 008714 228 NIVTAKDIIIATGSVPFVPKGI----EVDGKTVITSD----HALKLEFVP--DWIAIVGSGYIGLEFSDVYTALGSEVTF 297 (556)
Q Consensus 228 ~~~~~d~lViAtG~~p~~p~~~----~~~~~~v~t~~----~~~~~~~~~--~~v~VvG~G~~g~e~A~~l~~~g~~Vtl 297 (556)
.++.+|.||+|||..+.+++.. ...|..+.... ....+++.+ ..++++|+| +++++..+...|..+ +
T Consensus 161 g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v 237 (472)
T 2e5v_A 161 LVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-I 237 (472)
T ss_dssp EECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-E
T ss_pred CeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-E
Confidence 4578999999999987665432 12222211100 112222221 234556766 888999999999888 7
Q ss_pred EEeCCCCCCCCCHHH--------HHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe-cCEEE
Q 008714 298 IEALDQLMPGFDPEI--------GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE-VDAAL 368 (556)
Q Consensus 298 i~~~~~ll~~~d~~~--------~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~-~D~vi 368 (556)
..+++++++.++++. ...+.+.+++ .+. ++++.. . -.. +. .+++ .|.++
T Consensus 238 ~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~-~~~-v~ld~~-----~--~~~-----~~--------~~~~~~~~~~ 295 (472)
T 2e5v_A 238 NENGERFLFNYDKRGELAPRDILSRAIYIEMLK-GHK-VFIDLS-----K--IED-----FE--------RKFPVVAKYL 295 (472)
T ss_dssp ETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHH-TCC-EEEECT-----T--CTT-----HH--------HHCHHHHHHH
T ss_pred CCCCCCCCccCCcccCcCchhHHHHHHHHHHHh-CCc-EEEecc-----c--hHH-----HH--------HHhHHHHHHH
Confidence 888889998777654 5555555544 332 222110 0 000 00 2333 47778
Q ss_pred EeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCC-CC----CcHHHHHHHHHHHHHHH
Q 008714 369 IATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-KM----MLAHAASAQGISVVEQV 440 (556)
Q Consensus 369 ~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-~~----~~~~~A~~qg~~aa~~i 440 (556)
++.|..|+ +.+.+..... ...|+|.||+++| |++|||||+|||++ .. +++..+..++.+.++++
T Consensus 296 ~~~G~dp~-~~i~v~p~~~-~~~GGI~vd~~~~------t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a 364 (472)
T 2e5v_A 296 ARHGHNYK-VKIPIFPAAH-FVDGGIRVNIRGE------SNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINL 364 (472)
T ss_dssp HHTTCCTT-SCEECEEEEE-EESCEEECCTTCB------CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHG
T ss_pred HHhCcCcc-cceEeehhhc-eeCCCeEECCCCc------cccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHH
Confidence 88899999 5443322221 2578899999999 79999999999976 32 67777777755555544
No 96
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.76 E-value=6.5e-19 Score=182.10 Aligned_cols=195 Identities=21% Similarity=0.253 Sum_probs=115.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC--------ccc--cccCCCCchhhHhhhHHHHH-------hhh
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG--------GTC--VNRGCVPSKALLAVSGRMRE-------LQS 162 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G--------G~~--~~~g~ips~~l~~~~~~~~~-------~~~ 162 (556)
++||+|||||++|+++|+.|++.|.+|+|||+ +.+| |.| .+.+|.|.+.+......... ...
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence 58999999999999999999999999999999 5563 555 34455554322111100000 000
Q ss_pred hhhhhhcCcccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE--Ee-c----C--CEEEEccceE
Q 008714 163 EHHMKALGLQVHAA----GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT--IL-G----P--QKVKFGTDNI 229 (556)
Q Consensus 163 ~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~-~----~--~~v~~~~~~~ 229 (556)
...+..+|++.... .+... ....+...+.+.+++.||+++.+..+ .. + . ..|.+.++ +
T Consensus 84 ~~~~~~~Gi~~~~~~~g~~~p~~--------~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~ 154 (401)
T 2gqf_A 84 ISLVAEQGITYHEKELGQLFCDE--------GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-Q 154 (401)
T ss_dssp HHHHHHTTCCEEECSTTEEEETT--------CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-E
T ss_pred HHHHHhCCCceEECcCCEEccCC--------CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-E
Confidence 12233344432110 01000 12334455666777789999988644 22 2 2 34555555 7
Q ss_pred EEeCeEEEeCCCCCCC--------------------CCCCCCCCCeEeccc-cc---ccCCCCCCeEEEEc---------
Q 008714 230 VTAKDIIIATGSVPFV--------------------PKGIEVDGKTVITSD-HA---LKLEFVPDWIAIVG--------- 276 (556)
Q Consensus 230 ~~~d~lViAtG~~p~~--------------------p~~~~~~~~~v~t~~-~~---~~~~~~~~~v~VvG--------- 276 (556)
+++|+||+|||+.+.. |+.+..... .++.+ .+ +.....+.++.|+|
T Consensus 155 i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~-~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l 233 (401)
T 2gqf_A 155 WQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPF-TYRETDKFLTALSGISLPVTITALCGKSFYNQLL 233 (401)
T ss_dssp EEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCE-ECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEE
T ss_pred EECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeece-ecCCchhhcccCCCeeeeeEEEEcCCceEEeCEE
Confidence 9999999999998731 211111111 11222 23 22223355666668
Q ss_pred ------CchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHH
Q 008714 277 ------SGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE 311 (556)
Q Consensus 277 ------~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~ 311 (556)
+|+++++++..+.+ |.+|++ .++|.++.+
T Consensus 234 ~t~~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~~ 268 (401)
T 2gqf_A 234 FTHRGISGPAVLQISNYWQP-TESVEI-----DLLPNHNVE 268 (401)
T ss_dssp ECSSEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCHH
T ss_pred EECCCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCHH
Confidence 89999999998876 777775 378877753
No 97
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.1e-20 Score=188.40 Aligned_cols=245 Identities=18% Similarity=0.055 Sum_probs=148.8
Q ss_pred CCccEEEECCChHHHHHHHHHHH--cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVE--KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~--~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
.++||+|||||||||+||++|++ .|++|+|||| +.+||.|.+.+|++++..+...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~---------------------- 121 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKP---------------------- 121 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETT----------------------
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHH----------------------
Confidence 35899999999999999999975 4999999999 7899999999998876543210
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCC---CCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGI---EVDG 253 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~---~~~~ 253 (556)
....+++.|+++.... ......+.++++++..+..++.+ .+.+
T Consensus 122 ---------------------~~~~~~e~Gv~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 167 (326)
T 3fpz_A 122 ---------------------AHLFLQELEIPYEDEG-------------DYVVVKHAALFISTVLSKVLQLPNVKLFNA 167 (326)
T ss_dssp ---------------------THHHHHHTTCCCEECS-------------SEEEESCHHHHHHHHHHHHHTSTTEEEETT
T ss_pred ---------------------HHHHHHHcCCEEEECC-------------cceecceeEEEEcchhhhccccccceeecc
Confidence 0012234566654321 12333444555555543322221 1223
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+..+.........+++++|+|+|.++++.|..+.+.+.++++..+......... +.. . . ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~v~viggg~~av~~a~~~~~~~~~v~i~~~~~~~~~~~~----------~~~-~-~-----~~ 230 (326)
T 3fpz_A 168 TCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCAMDPNVIELAGYKNDGTRD----------LSQ-K-H-----GV 230 (326)
T ss_dssp EEEEEEEEESSCSSSSCEEEEEEEEEHHHHTCTTSSSCCCCEEEEESCBCTTSSBC----------TTS-C-C-----CE
T ss_pred cccceeeccCCcccCCCEEEEEccCceeeehhhhhhhccCcEEEEeeccccccccc----------cee-e-c-----ce
Confidence 33333333334445678999999999999999999999999999887654322100 001 0 0 01
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCE
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
+....+. ++.. .. . .....+.+|.++.+.|.+|.. +....+.|.+|..++ |++|||
T Consensus 231 ~~~~~g~-~~~~-~~---~----~~~~~~~~~~~~~~~g~~~~~---------~~~~e~~iv~~~~~~------t~vpGv 286 (326)
T 3fpz_A 231 ILSTTGH-DGPF-GA---F----CAKRIVDIDQNQKLGGMKGLD---------MNHAEHDVVIHSGAY------AGVDNM 286 (326)
T ss_dssp EEECCCS-CSSS-CS---H----HHHHHHHHCTTCCCCCCCCBC---------HHHHHHHHHHHCEEC------TTSBTE
T ss_pred EEEEecc-eeeE-ee---c----ceeEEEecCceeeecceeccc---------ccccCCeEEECCCeE------ECCCCE
Confidence 1111111 1100 00 0 001244556666666655532 223345677888888 799999
Q ss_pred EEecccCC----CC---CcHHHHHHHHHHHHHHHh
Q 008714 414 YCIGDANG----KM---MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 414 ya~GD~~~----~~---~~~~~A~~qg~~aa~~i~ 441 (556)
||+||+++ .+ +....++.+|+.||+.|+
T Consensus 287 ~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~ 321 (326)
T 3fpz_A 287 YFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQIL 321 (326)
T ss_dssp EECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEchHhccccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 99999852 11 233456778999999885
No 98
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=99.59 E-value=4.2e-14 Score=151.69 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=101.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhhh-----hhhhcCccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEH-----HMKALGLQV 173 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~-----~~~~~g~~~ 173 (556)
+|||+|||||+||++||..|++.|.+|+|||+. .+| ..+|.|+..........+.+.... .....+++.
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG----~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG----QMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT----CCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc----cccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 589999999999999999999999999999994 444 356777654332222222221000 000011110
Q ss_pred c------cc-------ccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe--cCC---EEEEccceEEEeCe
Q 008714 174 H------AA-------GYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GPQ---KVKFGTDNIVTAKD 234 (556)
Q Consensus 174 ~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~--~~~---~v~~~~~~~~~~d~ 234 (556)
. .+ ..+. ..+...+.+.+++ .|++++.+.+..+ +.. .|.+.+|.++.+|.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr-----------~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~ 172 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADR-----------VLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKA 172 (651)
T ss_dssp EEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEE
T ss_pred hhhhcccCcccccchhhCCH-----------HHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCE
Confidence 0 00 1122 2344455566666 5999988777654 333 45666778899999
Q ss_pred EEEeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEE
Q 008714 235 IIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299 (556)
Q Consensus 235 lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~ 299 (556)
||+|||..+..+..++... + .+.+ +| |.++++++..|.++|.+|+.+.
T Consensus 173 VVLATGt~s~~~~i~G~~~---~----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 173 VVLTVGTFLDGKIHIGLDN---Y----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp EEECCSTTTCCEEECC------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred EEEcCCCCccCccccCccc---C----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 9999999876554333211 0 1333 56 8899999999999999998874
No 99
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.54 E-value=3.6e-16 Score=163.56 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC--------CCCCCCCC
Q 008714 309 DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG--------RAPFTNGL 380 (556)
Q Consensus 309 d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G--------~~p~~~~l 380 (556)
+..+...+...+++ .| ++++++.|++|+.++++ +.|++.+| +++.+|.||+|+| +.|+.+..
T Consensus 203 ~~g~~~l~~~~~~~-~g-~i~~~~~V~~i~~~~~~--v~v~~~~g------~~~~ad~vi~a~~~~~l~~i~~~p~l~~~ 272 (431)
T 3k7m_X 203 SNGSADLVDAMSQE-IP-EIRLQTVVTGIDQSGDV--VNVTVKDG------HAFQAHSVIVATPMNTWRRIVFTPALPER 272 (431)
T ss_dssp TTCTHHHHHHHHTT-CS-CEESSCCEEEEECSSSS--EEEEETTS------CCEEEEEEEECSCGGGGGGSEEESCCCHH
T ss_pred CCcHHHHHHHHHhh-CC-ceEeCCEEEEEEEcCCe--EEEEECCC------CEEEeCEEEEecCcchHhheeeCCCCCHH
Confidence 44455666666655 78 99999999999875333 66777766 5799999999999 88987754
Q ss_pred CCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCC
Q 008714 381 GLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK 422 (556)
Q Consensus 381 ~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~ 422 (556)
..+..+.......++|+..++ ++.++||+.||+...
T Consensus 273 ~~~~~~~~~~~~~~kv~~~~~------~~~~~i~~~~d~~~~ 308 (431)
T 3k7m_X 273 RRSVIEEGHGGQGLKILIHVR------GAEAGIECVGDGIFP 308 (431)
T ss_dssp HHHHHHHCCCCCEEEEEEEEE------SCCTTEEEEBSSSSS
T ss_pred HHHHHHhCCCcceEEEEEEEC------CCCcCceEcCCCCEE
Confidence 433333333344589999998 678999999998543
No 100
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.53 E-value=2.6e-14 Score=136.28 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=108.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-----------------CCCCC-------CHHHHHHHHHHHhCCC-
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-----------------LMPGF-------DPEIGKLAQRVLINPR- 324 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-----------------ll~~~-------d~~~~~~~~~~l~~~~- 324 (556)
-+|+|||+|++|+++|..|++.|.+|+++++... ++..+ ..++.+.+.+.+++ .
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~-~~ 82 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG-LR 82 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT-CT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc-CC
Confidence 3699999999999999999999999999998621 11111 12566777888876 5
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCC-CC--------------------c
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL-GL--------------------E 383 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l-~l--------------------~ 383 (556)
|++++ +..++++..+ ++....+.+.+| .++.+|.||+|+|..++.... +. .
T Consensus 83 gv~i~-~~~v~~i~~~-~~~v~~v~~~~g------~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~ 154 (232)
T 2cul_A 83 PLHLF-QATATGLLLE-GNRVVGVRTWEG------PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLS 154 (232)
T ss_dssp TEEEE-ECCEEEEEEE-TTEEEEEEETTS------CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHH
T ss_pred CcEEE-EeEEEEEEEe-CCEEEEEEECCC------CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHH
Confidence 99998 4689999875 344345666665 579999999999995543210 00 0
Q ss_pred ccccccCC---------Cc-------eeeC----C--CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 384 NINVVTQR---------GF-------VPVD----E--RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 384 ~~~~~~~~---------G~-------i~vd----~--~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
..++...+ |. ..+. + .+.. |++|||||+|||+ ...+...|+.||+.+|++|.
T Consensus 155 ~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~-----t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~ 228 (232)
T 2cul_A 155 RLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRL-----KRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLL 228 (232)
T ss_dssp HTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEE-----TTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccc-----cccccceeeeecc-cCccHHHHHHHHHHHHHHHH
Confidence 11111110 00 0011 0 1111 6899999999999 77788999999999999986
Q ss_pred C
Q 008714 442 G 442 (556)
Q Consensus 442 g 442 (556)
.
T Consensus 229 ~ 229 (232)
T 2cul_A 229 H 229 (232)
T ss_dssp H
T ss_pred h
Confidence 3
No 101
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=99.45 E-value=2.6e-12 Score=137.30 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=103.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhh-----hhhhhcCccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGLQV 173 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~-----~~~~~~g~~~ 173 (556)
+|||+|||||+||++||..|++.|++|+|||+. .+|+ .+|.|+..........+.+... ......+++.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~----~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f 102 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ----MSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF 102 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC----cCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence 489999999999999999999999999999994 4553 4566654322211111111100 0001111111
Q ss_pred cc------c-------ccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe--cCC---EEEEccceEEEeCe
Q 008714 174 HA------A-------GYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GPQ---KVKFGTDNIVTAKD 234 (556)
Q Consensus 174 ~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~--~~~---~v~~~~~~~~~~d~ 234 (556)
.. + ..+. ..+...+.+.+++ .|++++.+.+..+ +.. .|.+.+|.++.+|.
T Consensus 103 ~~l~~~kGpav~~~r~~~Dr-----------~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ada 171 (637)
T 2zxi_A 103 KMLNTRKGKAVQSPRAQADK-----------KRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKA 171 (637)
T ss_dssp EEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSE
T ss_pred eecccccCccccchhhhCCH-----------HHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCE
Confidence 00 0 1122 2344555566666 5999988776643 232 36677788899999
Q ss_pred EEEeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEE
Q 008714 235 IIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299 (556)
Q Consensus 235 lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~ 299 (556)
||+|||..+..+..++. ..+. +.+ .|+.++++++..|.++|.+|+.+.
T Consensus 172 VVLATG~~s~~~~~~G~---~~~~----------~Gr----~G~~~A~~la~~L~~lG~~v~~l~ 219 (637)
T 2zxi_A 172 VVVTTGTFLNGVIYIGD---KMIP----------GGR----LGEPRSEGLSDFYRRFDFPLIRFK 219 (637)
T ss_dssp EEECCTTCBTCEEEETT---EEEE----------CSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred EEEccCCCccCceeccc---eecC----------CCC----CCchhHHHHHHHHHhcCCceEEec
Confidence 99999998765432221 1111 122 246788999999999998876654
No 102
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=99.16 E-value=2.6e-10 Score=122.31 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=103.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhh-----hhhhhcCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGLQ 172 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~-----~~~~~~g~~ 172 (556)
.+|||+|||||+||++||..|++.|.+|+|||+. .+|+ .+|.|+..........+.+... ......+++
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~----~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~ 95 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR----MSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ 95 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC----CccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence 4599999999999999999999999999999994 4664 4566764433222222222110 000111111
Q ss_pred cc------cc-------ccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe--cCCE---EEEccceEEEeC
Q 008714 173 VH------AA-------GYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GPQK---VKFGTDNIVTAK 233 (556)
Q Consensus 173 ~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~--~~~~---v~~~~~~~~~~d 233 (556)
.. .+ ..+. ..+...+.+.+++ .|++++.+.+... +... |.+.+|.++.+|
T Consensus 96 f~~l~~~kgpav~~~r~~~Dr-----------~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad 164 (641)
T 3cp8_A 96 FRMLNRSKGPAMHSPRAQADK-----------TQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAK 164 (641)
T ss_dssp EEEECSSSCTTTCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEE
T ss_pred hhhcccccCccccchhhhcCH-----------HHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeC
Confidence 10 00 1222 2334445556666 4999988876643 2333 556677889999
Q ss_pred eEEEeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEE
Q 008714 234 DIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299 (556)
Q Consensus 234 ~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~ 299 (556)
.||+|||..+..+... +...+. +.+++ |+.++++++..|.+.|.+|+.+.
T Consensus 165 ~VVLATG~~s~~~i~~---G~~~~~----------~g~~v---G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 165 AAILACGTFLNGLIHI---GMDHFP----------GGRST---AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp EEEECCTTCBTCEEEE---TTEEEE----------CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred EEEECcCCCCCcccee---eeeeec----------ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence 9999999986533211 111110 01111 46788999999999999987654
No 103
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.13 E-value=1.9e-10 Score=112.86 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=109.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeCCCCCCC--------------------------------------CCH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQLMPG--------------------------------------FDP 310 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~~~ll~~--------------------------------------~d~ 310 (556)
..|+|||+|++|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988754211 113
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEec--------CCCCCCCceEecCEEEEeeCCCCCCCCCCC
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELID--------AKTKEPKDTLEVDAALIATGRAPFTNGLGL 382 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--------g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l 382 (556)
++...+.+.+.+..||+++.++.++++..+ +++...+.+.+ ....++..++++|.||+|+|..++......
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 444455555544369999999999999865 34333455431 001122357999999999998887642211
Q ss_pred c-------ccccccCCCceeeCC-------CCccccCCCCcCCCEEEecccCC----C---CCcHHHHHHHHHHHHHHHh
Q 008714 383 E-------NINVVTQRGFVPVDE-------RMRVIDANGNLVPHLYCIGDANG----K---MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 383 ~-------~~~~~~~~G~i~vd~-------~l~~~~~~~t~~~~Vya~GD~~~----~---~~~~~~A~~qg~~aa~~i~ 441 (556)
. ..++....| +.+|. +.+ +..|++|++||++. . .+....+..+|+.+|.++.
T Consensus 199 ~~~~~~g~~~~v~~~~g-~~~~~~~~~~v~~~~------~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~ 271 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKA-LDMNTAEDAIVRLTR------EVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLAL 271 (284)
T ss_dssp HHHHHTTSSSCCCCCEE-ECHHHHHHHHHHHCE------EEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCcCCcCC-chhhhhhHHHhhccc------cccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHH
Confidence 1 011212222 33332 223 57799999999862 1 1245678899999999987
Q ss_pred C
Q 008714 442 G 442 (556)
Q Consensus 442 g 442 (556)
.
T Consensus 272 ~ 272 (284)
T 1rp0_A 272 K 272 (284)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.11 E-value=3.3e-10 Score=117.24 Aligned_cols=138 Identities=21% Similarity=0.268 Sum_probs=77.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc--------ccccc--CCCCchhhHhhh----HHHHH---h
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG--------TCVNR--GCVPSKALLAVS----GRMRE---L 160 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG--------~~~~~--g~ips~~l~~~~----~~~~~---~ 160 (556)
+.++||+|||||++|+++|..|++.|.+|+|||+ +.+|+ .|... .+.|...+.... ..+.. .
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ 104 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence 3468999999999999999999999999999999 66654 33311 122211100000 00000 0
Q ss_pred hhhhhhhhcCccccccccC--HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-E--ec--CCEEEEccceEEEeC
Q 008714 161 QSEHHMKALGLQVHAAGYD--RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I--LG--PQKVKFGTDNIVTAK 233 (556)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~~--~~~v~~~~~~~~~~d 233 (556)
.....+...|++....... +. ......+...+.+.+++.|++++.+..+ . .+ ...|.+.++ ++.+|
T Consensus 105 ~~~~~~~~~Gi~~~~~~~g~~~~------~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad 177 (417)
T 3v76_A 105 DFVALVERHGIGWHEKTLGQLFC------DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAA 177 (417)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEE------SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEES
T ss_pred HHHHHHHHcCCCcEEeeCCEEee------CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEee
Confidence 0011223333322111000 00 0001344455666777789999987533 1 12 245666666 89999
Q ss_pred eEEEeCCCCC
Q 008714 234 DIIIATGSVP 243 (556)
Q Consensus 234 ~lViAtG~~p 243 (556)
+||+|||..+
T Consensus 178 ~VIlAtG~~S 187 (417)
T 3v76_A 178 SLVVASGGKS 187 (417)
T ss_dssp EEEECCCCSS
T ss_pred EEEECCCCcc
Confidence 9999999875
No 105
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.04 E-value=8.1e-10 Score=104.98 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=73.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
++||+|||||++|+++|..|++.|.+|+|||+. .+| .+ |.|...-.......+.+. ...+ .
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~----~~~~~~~~~~~~~~~~~~-----d~~g-------~ 65 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MP----FLPPKPPFPPGSLLERAY-----DPKD-------E 65 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CC----SSCCCSCCCTTCHHHHHC-----CTTC-------C
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-cc----cCccccccchhhHHhhhc-----cCCC-------C
Confidence 489999999999999999999999999999993 444 22 222110000000011110 0000 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEe--cCC---EEEEccceEEEeCeEEEeCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTIL--GPQ---KVKFGTDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~--~~~---~v~~~~~~~~~~d~lViAtG~~p~ 244 (556)
+ ...+...+.+.+++. |++++...+..+ +.. .|.+.++.++.+|.||+|+|..+.
T Consensus 66 ~-----------~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 66 R-----------VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp C-----------HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred C-----------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 1 134555666777776 999987655432 222 466677778999999999998654
No 106
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=99.04 E-value=1.8e-09 Score=116.90 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=32.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVG 136 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~G 136 (556)
.+||||||||++|+++|+.|++.| .+|+|||| ...+
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~ 43 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCC
Confidence 489999999999999999999999 99999999 4443
No 107
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.98 E-value=3.7e-10 Score=123.12 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHc------CCeEEEecCCcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK------GLKTAIIEGDVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~------g~~V~viEk~~~ 135 (556)
.++||||||||.||++||+.|++. |.+|+||||..+
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 458999999999999999999998 999999999433
No 108
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.98 E-value=3.1e-09 Score=96.54 Aligned_cols=106 Identities=22% Similarity=0.371 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhh-cCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA-LGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 180 (556)
+||+|||||++|+++|..|++.|.+|+|||+.. +.+ +... ++.. .+++. ....
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~--~~~------~~~~---------------~~~~~~~~~~---~~~~ 55 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR--SKV------KGVS---------------RVPNYPGLLD---EPSG 55 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC--CTT------TTCS---------------CCCCSTTCTT---CCCH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC--Ccc------cCch---------------hhhccCCCcC---CCCH
Confidence 799999999999999999999999999999943 110 0000 0000 01100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe----cCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL----GPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.++...+.+.+++.|++++.+..... +...+.+.++ ++.+|.||+|+|..|.+
T Consensus 56 -----------~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 56 -----------EELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL 112 (180)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc
Confidence 33445566677788999998843322 2235666666 89999999999999854
No 109
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.96 E-value=5.4e-09 Score=102.49 Aligned_cols=128 Identities=21% Similarity=0.299 Sum_probs=78.0
Q ss_pred CccEEEECCChHHHHHHHHHHHc-CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc-c
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA-G 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 177 (556)
++||+|||||++|+++|..|++. |.+|+|||+ +.+||.+...+++....+.... . ...+..+|++.... .
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~-~------~~~l~~~G~~~~~~~~ 111 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP-A------HLFLDEIGVAYDEQDT 111 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETT-T------HHHHHHHTCCCEECSS
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcH-H------HHHHHHcCCCcccCCC
Confidence 48999999999999999999997 999999999 6777655544444333221110 0 11223344432211 0
Q ss_pred c----CHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEE-Ee--cCC---EEEEc---------cc-----eEEEe
Q 008714 178 Y----DRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGT-IL--GPQ---KVKFG---------TD-----NIVTA 232 (556)
Q Consensus 178 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~-~~--~~~---~v~~~---------~~-----~~~~~ 232 (556)
+ +. ..+...+.+.+.+ .|++++.+..+ .. +.. .|.+. ++ .++.+
T Consensus 112 ~~~~~~~-----------~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~a 180 (284)
T 1rp0_A 112 YVVVKHA-----------ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEA 180 (284)
T ss_dssp EEEESCH-----------HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEE
T ss_pred EEEecCH-----------HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEEC
Confidence 0 11 2233344444544 69999988643 21 223 23332 21 57999
Q ss_pred CeEEEeCCCCCCCC
Q 008714 233 KDIIIATGSVPFVP 246 (556)
Q Consensus 233 d~lViAtG~~p~~p 246 (556)
|.||+|+|..+.+.
T Consensus 181 d~VV~AtG~~s~~~ 194 (284)
T 1rp0_A 181 KIVVSSCGHDGPFG 194 (284)
T ss_dssp EEEEECCCSSSTTT
T ss_pred CEEEECCCCchHHH
Confidence 99999999876644
No 110
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.92 E-value=4.3e-09 Score=110.20 Aligned_cols=137 Identities=23% Similarity=0.380 Sum_probs=77.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCch-----hhHhh----hHH----HHH---
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSK-----ALLAV----SGR----MRE--- 159 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips~-----~l~~~----~~~----~~~--- 159 (556)
.++||+|||||++|+++|+.|++.|.+|+|||| +.+|+.....+ |.... .+... ... +..
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 104 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence 458999999999999999999999999999999 55664322111 11000 00000 000 000
Q ss_pred hhhhhhhhhcCcccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-E---ecC--CEEEEccceE
Q 008714 160 LQSEHHMKALGLQVHAA----GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I---LGP--QKVKFGTDNI 229 (556)
Q Consensus 160 ~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~---~~~--~~v~~~~~~~ 229 (556)
......+..+|++.... .+... .....+...+.+.+++.||+++.+..+ . .+. ..|.+.++.+
T Consensus 105 ~~~~~~~~~~G~~~~~~~~g~~~p~~-------~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~ 177 (447)
T 2i0z_A 105 EDIITFFENLGVKLKEEDHGRMFPVS-------NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEV 177 (447)
T ss_dssp HHHHHHHHHTTCCEEECGGGEEEETT-------CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCE
T ss_pred HHHHHHHHhcCCceEEeeCCEEECCC-------CCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCE
Confidence 00011122233321100 00000 001344455666777789999987543 1 122 4566777767
Q ss_pred EEeCeEEEeCCCCC
Q 008714 230 VTAKDIIIATGSVP 243 (556)
Q Consensus 230 ~~~d~lViAtG~~p 243 (556)
+.+|.||+|||..+
T Consensus 178 i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 178 LETNHVVIAVGGKS 191 (447)
T ss_dssp EECSCEEECCCCSS
T ss_pred EECCEEEECCCCCc
Confidence 99999999999876
No 111
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.88 E-value=4.4e-09 Score=111.92 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC-------CccccccCCCCchhhHhh-hH--------------
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV-------GGTCVNRGCVPSKALLAV-SG-------------- 155 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~-------GG~~~~~g~ips~~l~~~-~~-------------- 155 (556)
...+||+|||||++|+++|..|++.|++|+|||+ ..+ ++.|....|.|....... .+
T Consensus 105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~ 184 (549)
T 3nlc_A 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549)
T ss_dssp TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEec
Confidence 4458999999999999999999999999999999 444 233333333221110000 00
Q ss_pred --HHHHhhhhhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-E--ecC---CEEEEccc
Q 008714 156 --RMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I--LGP---QKVKFGTD 227 (556)
Q Consensus 156 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~~~---~~v~~~~~ 227 (556)
..........+..+|.+..........+ .......+...+.+.+++.|++++.+..+ . .+. ..|.+.++
T Consensus 185 ~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~---G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G 261 (549)
T 3nlc_A 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHI---GTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549)
T ss_dssp CTTCHHHHHHHHHHHTTCCGGGGTBSSCCC---CHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred cccccHHHHHHHHHHcCCCceEeecccccc---ccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence 0000000011223333211100000000 00112345556666777789999988643 2 222 34677778
Q ss_pred eEEEeCeEEEeCCCCC
Q 008714 228 NIVTAKDIIIATGSVP 243 (556)
Q Consensus 228 ~~~~~d~lViAtG~~p 243 (556)
+++.+|.||+|+|..+
T Consensus 262 ~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 262 EEIKSRHVVLAVGHSA 277 (549)
T ss_dssp CEEECSCEEECCCTTC
T ss_pred CEEECCEEEECCCCCh
Confidence 8899999999999886
No 112
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.86 E-value=1e-08 Score=104.83 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=76.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCc-hhhHhhhHHHHHhhhhh-------hhhhcCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPS-KALLAVSGRMRELQSEH-------HMKALGL 171 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips-~~l~~~~~~~~~~~~~~-------~~~~~g~ 171 (556)
.+||+|||||++|+++|..|++.|.+|+|||+ ..+++........|. ..++...+..+.+.... .+.. |.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-g~ 89 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH-NK 89 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET-TE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC-Cc
Confidence 47999999999999999999999999999999 444332111000110 00111111111110000 0000 00
Q ss_pred cc------cc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEccceEEEeCeEEEeCC
Q 008714 172 QV------HA--AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGTDNIVTAKDIIIATG 240 (556)
Q Consensus 172 ~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~~~~~~~~d~lViAtG 240 (556)
.. .. ..++. ..+...+.+.+.+.|++++.+..+ .. +. .|.+.++.++.+|.||.|+|
T Consensus 90 ~~~~~~~~~~~~~~~~r-----------~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG 157 (379)
T 3alj_A 90 SVSKETFNGLPWRIMTR-----------SHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADG 157 (379)
T ss_dssp EEEEECGGGCCEEEEEH-----------HHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCC
T ss_pred eeeeccCCCCceEEECH-----------HHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCC
Confidence 00 00 01111 345555666677789999988633 22 34 77777788899999999999
Q ss_pred CCCCC
Q 008714 241 SVPFV 245 (556)
Q Consensus 241 ~~p~~ 245 (556)
..+.+
T Consensus 158 ~~s~v 162 (379)
T 3alj_A 158 VGSKV 162 (379)
T ss_dssp TTCHH
T ss_pred ccHHH
Confidence 98653
No 113
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.86 E-value=3.5e-09 Score=108.52 Aligned_cols=38 Identities=42% Similarity=0.709 Sum_probs=34.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.|||+||||||||+++|+.|++.|++|+|||| +.+|..
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~ 42 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP 42 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence 59999999999999999999999999999999 666543
No 114
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.85 E-value=9.3e-09 Score=102.23 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=43.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCCCCchhhH
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALL 151 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~ips~~l~ 151 (556)
.++||+|||||++|+++|+.|+++ |++|+|||+ ..+||.+...++.+.+.+.
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~ 132 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVM 132 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhc
Confidence 358999999999999999999998 999999999 6788777666666655443
No 115
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.84 E-value=2.5e-08 Score=101.18 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCC--ccccccCCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVG--GTCVNRGCV 145 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~G--G~~~~~g~i 145 (556)
.++||+|||||++|+++|+.|++.|++|+||||. .+| .++.+.|++
T Consensus 3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~~~~g~~ 51 (369)
T 3dme_A 3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVI 51 (369)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTSSSCCEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCcCCcccc
Confidence 3589999999999999999999999999999994 554 344454444
No 116
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.84 E-value=1.3e-08 Score=107.80 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..+||+|||||++|+++|..|++.|.+|+|||+ +.+|+ |...++.|. ..+. +..+|.......+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~--------~~~~------l~~~g~~~~~~~~ 155 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPF--------TIHD------LRALGAKKFYGRF 155 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHH--------HHHH------HHTTTHHHHCTTT
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChh--------HHHH------HHHcCCccccccc
Confidence 458999999999999999999999999999999 55553 332222221 0011 1111111000000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee-------cCCEEEE--c-cc--eEEEeCeEEEeCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL-------GPQKVKF--G-TD--NIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~-------~~~~v~~--~-~~--~~~~~d~lViAtG~~p~~ 245 (556)
....+. ......+...+.+.+++.|++++.+..+ .. +...|.+ . ++ .++.+|+||+|+|..+.+
T Consensus 156 ~~~~~~---~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 156 CTGTLD---HISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp TCTTCC---EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred cccccc---cCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 000000 0001334455666677789999988654 22 1245666 3 45 579999999999998765
Q ss_pred C
Q 008714 246 P 246 (556)
Q Consensus 246 p 246 (556)
.
T Consensus 233 r 233 (497)
T 2bry_A 233 E 233 (497)
T ss_dssp T
T ss_pred c
Confidence 4
No 117
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.82 E-value=1.8e-08 Score=108.82 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=83.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHc------CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhh-------
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEK------GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSE------- 163 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~------g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~------- 163 (556)
..+++||+|||||++|+++|+.|++. |++|+|||| ..+|+.+...+++..+.+......+......
T Consensus 32 ~~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~ 111 (584)
T 2gmh_A 32 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTE 111 (584)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCE
T ss_pred cccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeech
Confidence 34569999999999999999999999 999999999 6777765555555544432211111100000
Q ss_pred hhhhhcCccccccccC--HH-HHHHHHH--HHHHHHHHHHHHHHHHcCcEEEeceEEE---ecC--C--EEEEc------
Q 008714 164 HHMKALGLQVHAAGYD--RQ-GVADHAN--NLATKIRNNLTNSMKALGVDILTGVGTI---LGP--Q--KVKFG------ 225 (556)
Q Consensus 164 ~~~~~~g~~~~~~~~~--~~-~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~--~--~v~~~------ 225 (556)
..+..+... ....++ .. .+..... -....+..++.+.+++.||+++.+.... .+. . .|.+.
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~ 190 (584)
T 2gmh_A 112 DRFGILTEK-YRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQK 190 (584)
T ss_dssp EEEEEECSS-CEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECT
T ss_pred hheeeeccC-CCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccC
Confidence 000000000 000000 00 0000000 0124566677777888899999986431 222 2 24444
Q ss_pred c---------ceEEEeCeEEEeCCCCCC
Q 008714 226 T---------DNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 226 ~---------~~~~~~d~lViAtG~~p~ 244 (556)
+ +.++++|.||+|+|.+..
T Consensus 191 ~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 191 DGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp TSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred CCCcccccCCceEEECCEEEEeeCCCch
Confidence 2 257999999999998753
No 118
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.78 E-value=2.9e-08 Score=107.07 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=76.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCc-hhhHhhhHHHHHhhhhhhhhh------cCc-
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPS-KALLAVSGRMRELQSEHHMKA------LGL- 171 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips-~~l~~~~~~~~~~~~~~~~~~------~g~- 171 (556)
..+||+|||||++|+++|..|++.|++|+|||+...++...-.+..|. ..++...+..+.+........ ++.
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 101 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQD 101 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCC
Confidence 468999999999999999999999999999999544332221112221 111111111111111100000 000
Q ss_pred ------cccc-----------cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEec-----CCEEEEc-cc
Q 008714 172 ------QVHA-----------AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG-----PQKVKFG-TD 227 (556)
Q Consensus 172 ------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~-----~~~v~~~-~~ 227 (556)
.... ..++. ..+...+.+.+++.|++++.+.. ..+. ...|.+. +|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~v~r-----------~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G 170 (591)
T 3i3l_A 102 QAPWTFSFAAPKVAPWVFDHAVQVKR-----------EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGG 170 (591)
T ss_dssp CCCEEEECCCC--CTTCCSCEEECCH-----------HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETT
T ss_pred CccceeecccccccccccCeeEEEcH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCC
Confidence 0000 01122 34555566677778999998843 3221 2345554 45
Q ss_pred --eEEEeCeEEEeCCCCCC
Q 008714 228 --NIVTAKDIIIATGSVPF 244 (556)
Q Consensus 228 --~~~~~d~lViAtG~~p~ 244 (556)
.++.+|.||.|+|....
T Consensus 171 ~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 171 ESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp EEEEEEESEEEECCGGGCH
T ss_pred ceEEEEcCEEEECCCCcch
Confidence 57999999999998754
No 119
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.76 E-value=2.5e-08 Score=103.36 Aligned_cols=130 Identities=23% Similarity=0.296 Sum_probs=74.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC----CccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc----
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV----GGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ---- 172 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~----GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~---- 172 (556)
++||+|||||++|+++|..|++.|++|+|||+... .|.+.+..|++ ++...+..+.+.........+..
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~---~l~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCME---HLDEAGFLDAVKAQGFQQKFGAKFVRG 81 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHH---HHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHH---HHHHcCChHHHHHcCCcccCCcEEEeC
Confidence 48999999999999999999999999999999532 23333222221 22211111111110000000000
Q ss_pred -------cc---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CC--EEEEccce-
Q 008714 173 -------VH---------AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQ--KVKFGTDN- 228 (556)
Q Consensus 173 -------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~--~v~~~~~~- 228 (556)
.. ...+++ ..+...+.+.+++.|++++.+..+ .+ + .. .+.+.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~r-----------~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~ 150 (421)
T 3nix_A 82 KEIADFNFSDQFSNGWNWTWQVPR-----------GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNK 150 (421)
T ss_dssp TEEEEEETTSCSSCSCCCEEECCH-----------HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCE
T ss_pred CeeEEEeehhhcCCCCCceeEECH-----------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCE
Confidence 00 001122 345555666667779999998643 11 1 22 23345565
Q ss_pred -EEEeCeEEEeCCCCCC
Q 008714 229 -IVTAKDIIIATGSVPF 244 (556)
Q Consensus 229 -~~~~d~lViAtG~~p~ 244 (556)
++.+|.||.|+|..+.
T Consensus 151 ~~~~a~~vV~A~G~~s~ 167 (421)
T 3nix_A 151 REIEARFIIDASGYGRV 167 (421)
T ss_dssp EEEEEEEEEECCGGGCH
T ss_pred EEEEcCEEEECCCCchh
Confidence 6999999999997753
No 120
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.76 E-value=2e-08 Score=102.70 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=39.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCc--cccccCCCC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG--TCVNRGCVP 146 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG--~~~~~g~ip 146 (556)
...++||+|||||++|+++|..|++.|++|+|||+..+++ ++.+.|++.
T Consensus 14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~~~~g~~~ 64 (382)
T 1ryi_A 14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLG 64 (382)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccchhcCceec
Confidence 3456899999999999999999999999999999965543 444555543
No 121
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.74 E-value=6.6e-08 Score=104.39 Aligned_cols=41 Identities=34% Similarity=0.623 Sum_probs=36.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+||||||||++|+++|+.|++.|++|+|||| +.+||...
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence 358999999999999999999999999999999 67777654
No 122
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.73 E-value=1.3e-08 Score=104.58 Aligned_cols=143 Identities=22% Similarity=0.202 Sum_probs=74.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhh-hhhhhh---cCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQS-EHHMKA---LGLQVHA 175 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~-~~~~~~---~g~~~~~ 175 (556)
++||+|||||++|+++|..|++.|++|+|||+ ..+|+.....+.+....+ ...+....... ...... +......
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 82 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGIL-NEADIKADRSFIANEVKGARIYGPSEKR 82 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHH-HHTTCCCCTTTEEEEESEEEEECTTCSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHH-HHcCCCCChHHhhhhcceEEEEcCCCCE
Confidence 48999999999999999999999999999999 445553332222221111 11100000000 000000 0000000
Q ss_pred -cccCHHHHHHH--HHHHHHHHHHHHHHHHHHcCcEEEeceEE-E--ecCCE---EEE---ccceEEEeCeEEEeCCCCC
Q 008714 176 -AGYDRQGVADH--ANNLATKIRNNLTNSMKALGVDILTGVGT-I--LGPQK---VKF---GTDNIVTAKDIIIATGSVP 243 (556)
Q Consensus 176 -~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~~~~~---v~~---~~~~~~~~d~lViAtG~~p 243 (556)
..++....... ..-....+...+.+.+.+.|++++.+..+ . .+... |.+ +++.++++|.||.|+|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 83 PIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp CEEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EEEEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 00111000000 00001345556666777789999987532 1 12222 444 3456899999999999875
Q ss_pred C
Q 008714 244 F 244 (556)
Q Consensus 244 ~ 244 (556)
.
T Consensus 163 ~ 163 (397)
T 3cgv_A 163 E 163 (397)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.73 E-value=4.6e-08 Score=104.19 Aligned_cols=136 Identities=21% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCch--hhHhhhHHHHHhhhhhhh------hhcCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSK--ALLAVSGRMRELQSEHHM------KALGL 171 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~--~l~~~~~~~~~~~~~~~~------~~~g~ 171 (556)
.++||+|||||++|+++|+.|++.|++|+|||+...+......++.|.. .++...+..+.+...... ..++.
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 85 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGK 85 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence 3589999999999999999999999999999995433322222233321 122222222221110000 00000
Q ss_pred c-------cc---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-E--ecCC---EEEE--ccc
Q 008714 172 Q-------VH---------AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I--LGPQ---KVKF--GTD 227 (556)
Q Consensus 172 ~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~~~~---~v~~--~~~ 227 (556)
. .. ...++. ..+...+.+.+.+.|++++.+..+ . .+.. .|.+ .+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~r-----------~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG 154 (512)
T 3e1t_A 86 EPEPWTFGFTRHPDDPYGFAYQVER-----------ARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEG 154 (512)
T ss_dssp CSSCEEEESSSSSSSTTCCEEBCCH-----------HHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSS
T ss_pred CccccccccccCCCCCcceeeEecH-----------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCC
Confidence 0 00 000122 345556666777789999988543 1 1222 2333 335
Q ss_pred --eEEEeCeEEEeCCCCCCCC
Q 008714 228 --NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 228 --~~~~~d~lViAtG~~p~~p 246 (556)
.++.+|.||.|+|....+.
T Consensus 155 ~~~~i~ad~VI~AdG~~S~vr 175 (512)
T 3e1t_A 155 VELMAHARFIVDASGNRTRVS 175 (512)
T ss_dssp CEEEEEEEEEEECCCTTCSSG
T ss_pred CEEEEEcCEEEECCCcchHHH
Confidence 4799999999999876543
No 124
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.72 E-value=8.4e-08 Score=103.43 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCCCC----Cc----HHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM----ML----AHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~----~~----~~~A~~qg~~aa~~i~g 442 (556)
..|.|.||+++|+.|.+++.+||+||+|++++.. .+ ...++-.|++|+++++.
T Consensus 501 t~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~ 561 (566)
T 1qo8_A 501 TMGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAK 561 (566)
T ss_dssp ECCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ecccEEECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 5788999999999988889999999999997541 12 33466778999988763
No 125
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.71 E-value=1.6e-07 Score=95.99 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=34.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG 137 (556)
.++||+|||||++|+++|.+|++.|++|+|||+..+|+
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~~ 41 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGS 41 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 45899999999999999999999999999999965553
No 126
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.70 E-value=4.6e-08 Score=107.81 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=34.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G 136 (556)
..+||+|||||++|+++|+.|++.|++|+|||+ ..+|
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g 308 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA 308 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccc
Confidence 458999999999999999999999999999999 5665
No 127
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.70 E-value=1.1e-08 Score=98.61 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=37.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.+||+|||||||||+||..|+++|++|+|||| +.+||.+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 47999999999999999999999999999999 88999875
No 128
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.69 E-value=7.1e-08 Score=99.31 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=34.2
Q ss_pred CCccEEEECCChHHHHHHHHHHH-cC-CeEEEecCCcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVE-KG-LKTAIIEGDVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~-~g-~~V~viEk~~~GG 137 (556)
.++||+|||||++|+++|.+|++ .| ++|+|||+..+++
T Consensus 20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~~ 59 (405)
T 2gag_B 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAG 59 (405)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCCC
Confidence 45899999999999999999999 99 9999999955654
No 129
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.68 E-value=1.1e-07 Score=104.97 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G 136 (556)
..+||+|||||.+|+++|+.|++.|++|+|||+ +.+|
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g 300 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPA 300 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTT
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccc
Confidence 458999999999999999999999999999999 5565
No 130
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.67 E-value=2.3e-09 Score=113.70 Aligned_cols=146 Identities=17% Similarity=0.124 Sum_probs=98.6
Q ss_pred EeCeEEEeCCCCCCCCCCCCCCCCeEecc---cccccC--------------CCCCCeEEEEcCchhHHHHHHHHHhCCC
Q 008714 231 TAKDIIIATGSVPFVPKGIEVDGKTVITS---DHALKL--------------EFVPDWIAIVGSGYIGLEFSDVYTALGS 293 (556)
Q Consensus 231 ~~d~lViAtG~~p~~p~~~~~~~~~v~t~---~~~~~~--------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~ 293 (556)
.||++++++|++|..++....+.+.+++. .+...+ ...+.+|+|||||++|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 46789999999987665322221122221 111111 2345799999999999999999999999
Q ss_pred eEEEEEeCCCCCCC----CC-----------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEec
Q 008714 294 EVTFIEALDQLMPG----FD-----------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPA 340 (556)
Q Consensus 294 ~Vtli~~~~~ll~~----~d-----------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~ 340 (556)
+|+++++.+.+... +. .++.+.+.+.+++ .||++++++.+++++.+
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~ 195 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALL-LGVEIHWGVKFTGLQPP 195 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHH-TTCEEEESCEEEEEECC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe
Confidence 99999988754211 01 4555667777776 79999999999999864
Q ss_pred C-CCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 341 K-DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 341 ~-~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+ ++..+.+++.+.. +++..++.+|.||+|+|..+...
T Consensus 196 ~~~~~~~~v~~~~~~-~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 196 PRKGSGWRAQLQPNP-PAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp CSTTCCBEEEEESCC-CHHHHTCCBSEEEECCCTTCCCT
T ss_pred cCCCCEEEEEEEECC-CCCEEEEEcCEEEECCCCCcccc
Confidence 2 2334566663210 00114689999999999998765
No 131
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.67 E-value=3.1e-08 Score=102.26 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=31.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
...+||+|||||++|+++|+.|++.|++|+|||+
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEA 54 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeC
Confidence 3468999999999999999999999999999999
No 132
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.67 E-value=9.9e-08 Score=101.53 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=43.7
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCCCCC--------cHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMM--------LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~--------~~~~A~~qg~~aa~~i~g 442 (556)
..|.|.+|+++|+.|.+++.+||+||+|.+++... ....|+--|++|+++++.
T Consensus 448 t~GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 448 TLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp ECCEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred cCcCeeECCCCceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 67789999999999998899999999999975421 234577889999999875
No 133
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.66 E-value=1.4e-09 Score=118.22 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=46.6
Q ss_pred CceEEEcCceEEEEEecCCC-CeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccc
Q 008714 324 RKIDYHTGVFATKITPAKDG-KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVV 388 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~ 388 (556)
.||++++++.+++|..++++ +...|++.+.. .++..++.+|.||+|+|..|+...|.+...|..
T Consensus 273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~-~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~ 337 (623)
T 3pl8_A 273 ERFNLFPAVACERVVRNALNSEIESLHIHDLI-SGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 337 (623)
T ss_dssp EEEEEECSEEEEEEEECTTSSCEEEEEEEETT-TCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcC-CCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence 48999999999999876433 55667776521 123357899999999999999876655555443
No 134
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.66 E-value=8.1e-08 Score=98.80 Aligned_cols=141 Identities=14% Similarity=0.229 Sum_probs=74.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCch--hhHhhhHHHHHhhhh-hh------hhhcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSK--ALLAVSGRMRELQSE-HH------MKALG 170 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~--~l~~~~~~~~~~~~~-~~------~~~~g 170 (556)
++||+|||||++|+++|..|++.|++|+|||+ ..+... .....+... .++...+..+.+... .. +...|
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~-~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g 84 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAI-NGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDG 84 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC----CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCcc-CceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCC
Confidence 48999999999999999999999999999999 333110 000111111 111111111111100 00 00001
Q ss_pred cc---ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEE-Ee----cCC--EEEEccceEEEeCeEEEeC
Q 008714 171 LQ---VHAAGYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGT-IL----GPQ--KVKFGTDNIVTAKDIIIAT 239 (556)
Q Consensus 171 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~-~~----~~~--~v~~~~~~~~~~d~lViAt 239 (556)
.. ............ ..-....+...+.+.+++. |++++.+... .. +.. .|.+.+|.++++|.||.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~--~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad 162 (399)
T 2x3n_A 85 ELLRYFNYSSVDARGYF--ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD 162 (399)
T ss_dssp EEEEEEETTSSCGGGCE--EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred CEEEecchHHhcccCcc--ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence 00 000000000000 0000134555666677776 8999887533 21 233 6777777789999999999
Q ss_pred CCCCC
Q 008714 240 GSVPF 244 (556)
Q Consensus 240 G~~p~ 244 (556)
|..+.
T Consensus 163 G~~s~ 167 (399)
T 2x3n_A 163 GIASY 167 (399)
T ss_dssp CTTCH
T ss_pred CCChH
Confidence 98754
No 135
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.65 E-value=1.2e-07 Score=101.50 Aligned_cols=34 Identities=26% Similarity=0.696 Sum_probs=32.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.++||+|||||++|+++|+.|++.|.+|+||||.
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~ 37 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3589999999999999999999999999999993
No 136
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.65 E-value=8.1e-08 Score=96.18 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=36.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
++||+|||||++|+++|..|++.|.+|+|||| ..+||.+.
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~ 42 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccce
Confidence 37999999999999999999999999999999 67888765
No 137
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.65 E-value=1e-07 Score=102.63 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=73.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCc--hhhHhhhHHHHHhhhhh-----h-hhhc-
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPS--KALLAVSGRMRELQSEH-----H-MKAL- 169 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips--~~l~~~~~~~~~~~~~~-----~-~~~~- 169 (556)
.++||+|||||++|+++|..|++.|++|+|||| ...... ....++.. ..++...+..+.+.... + +...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~-~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 126 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGH-DRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIF 126 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCS-SSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCC-ceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcc
Confidence 458999999999999999999999999999999 433211 11111211 11121112222111100 0 0000
Q ss_pred --Ccccc-----cc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE-e----cCCEEEE--ccc-eEEE
Q 008714 170 --GLQVH-----AA---GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-L----GPQKVKF--GTD-NIVT 231 (556)
Q Consensus 170 --g~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~----~~~~v~~--~~~-~~~~ 231 (556)
.++.. .+ .++. ..+...+.+.+++.|++++.+..+. . +...|.+ .++ ++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~-----------~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~ 195 (570)
T 3fmw_A 127 TQGLDFGLVDTRHPYTGLVPQ-----------SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVR 195 (570)
T ss_dssp TTCCBGGGSCCSCCSBBCCCH-----------HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEE
T ss_pred cccccccccCCCCCeeEEeCH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEE
Confidence 00000 00 1122 3344555666666799999886542 2 2234555 566 6899
Q ss_pred eCeEEEeCCCCCC
Q 008714 232 AKDIIIATGSVPF 244 (556)
Q Consensus 232 ~d~lViAtG~~p~ 244 (556)
+|+||.|+|.+..
T Consensus 196 a~~vV~ADG~~S~ 208 (570)
T 3fmw_A 196 ARYGVGCDGGRST 208 (570)
T ss_dssp ESEEEECSCSSCH
T ss_pred eCEEEEcCCCCch
Confidence 9999999998753
No 138
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.65 E-value=8.8e-08 Score=99.87 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC-eEEEecCCcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~~ 135 (556)
..+||||||||++|+++|++|++.|+ +|+|||+...
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 45899999999999999999999999 9999999443
No 139
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.62 E-value=1.2e-07 Score=96.63 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~G 136 (556)
.++||+|||||.+|+++|++|+ +|++|+|||+. .+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcc
Confidence 4589999999999999999999 59999999994 675
No 140
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=98.61 E-value=2.8e-07 Score=94.28 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=33.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG 137 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG 137 (556)
++||+|||||++|+++|.+|++.|++|+|||+...++
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 5899999999999999999999999999999965554
No 141
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.60 E-value=1.5e-07 Score=100.86 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.5
Q ss_pred CccEEEECCChHHHHHHHHHHH---cCCeEEEecCCcCCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE---KGLKTAIIEGDVVGG 137 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk~~~GG 137 (556)
.+||+|||||++|+++|..|++ .|++|+|||+..++.
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~ 44 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR 44 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC
Confidence 4799999999999999999999 999999999955543
No 142
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.60 E-value=5.2e-07 Score=93.50 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=37.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+||+|||||.+|++||.+|++.|++|+|+|+ +.+||.+..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTN 41 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceee
Confidence 4899999999999999999999999999999 788988753
No 143
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.59 E-value=6.3e-08 Score=101.49 Aligned_cols=34 Identities=35% Similarity=0.756 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.++||+|||||++|+++|..|++.|++|+|||+.
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~ 38 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSK 38 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3589999999999999999999999999999993
No 144
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.59 E-value=1.2e-07 Score=97.52 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
..+||+|||||++|+++|..|++.|++|+|||+ ..+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 61 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR 61 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 458999999999999999999999999999999 443
No 145
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.59 E-value=3e-07 Score=94.35 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=74.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC-Cc-cccccCCCCchh--hHhhhHHHHHhhhh-hhhhhcCccc--
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV-GG-TCVNRGCVPSKA--LLAVSGRMRELQSE-HHMKALGLQV-- 173 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~-GG-~~~~~g~ips~~--l~~~~~~~~~~~~~-~~~~~~g~~~-- 173 (556)
++||+|||||++|+++|..|++.|++|+|||+... .+ .....+.+.... ++...+..+.+... .....+.+..
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 81 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG 81 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence 47999999999999999999999999999999331 10 000111121111 11111111111100 0000000000
Q ss_pred cccccCHHHHHHH-H--HHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c---CCEEEE-ccce--EEEeCeEEEeCCC
Q 008714 174 HAAGYDRQGVADH-A--NNLATKIRNNLTNSMKALGVDILTGVGT-IL--G---PQKVKF-GTDN--IVTAKDIIIATGS 241 (556)
Q Consensus 174 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~---~~~v~~-~~~~--~~~~d~lViAtG~ 241 (556)
....++....... . ......+...+.+.+.+.|++++.+... .. + ...|.+ .+|. ++++|.||.|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCC
Confidence 0001121111000 0 0001234445555666679999988643 11 1 245666 5666 7999999999998
Q ss_pred CCCCC
Q 008714 242 VPFVP 246 (556)
Q Consensus 242 ~p~~p 246 (556)
+..+-
T Consensus 162 ~S~vr 166 (394)
T 1k0i_A 162 HGISR 166 (394)
T ss_dssp TCSTG
T ss_pred CcHHH
Confidence 86543
No 146
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.59 E-value=1.4e-07 Score=100.09 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchh--hHhhhHHHHHhhhh--hhhhhc-Cc
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKA--LLAVSGRMRELQSE--HHMKAL-GL 171 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~--l~~~~~~~~~~~~~--~~~~~~-g~ 171 (556)
.+.++||+||||||+|+++|..|++.|++|+|||| ..++.... ..++.... ++...+..+.+... .....+ +.
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r-~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESR-GLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL 86 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCC-SEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC-cceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence 34568999999999999999999999999999999 44332110 00111111 11111111111000 000000 00
Q ss_pred cccccccCHHHHHHH-HHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecCC--EEEEccce---EEEeCeEEEeCCCC
Q 008714 172 QVHAAGYDRQGVADH-ANNLATKIRNNLTNSMKALGVDILTGVGTI---LGPQ--KVKFGTDN---IVTAKDIIIATGSV 242 (556)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~~--~v~~~~~~---~~~~d~lViAtG~~ 242 (556)
........... .+ ..-....+...+.+.+.+.|++++.+.... .+.. +|.+.++. ++++|+||.|.|.+
T Consensus 87 ~~~~~~~~~~~--~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 164 (500)
T 2qa1_A 87 PIDFGVLEGAW--QAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR 164 (500)
T ss_dssp EEEGGGSTTGG--GCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred ecccccCCCCC--CceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence 00000000000 00 000013455566667777899999886431 2222 34444432 79999999999987
Q ss_pred CC
Q 008714 243 PF 244 (556)
Q Consensus 243 p~ 244 (556)
..
T Consensus 165 S~ 166 (500)
T 2qa1_A 165 SS 166 (500)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 147
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.56 E-value=4.3e-07 Score=94.06 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=36.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
||+|||||++|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 899999999999999999999999999999 789998764
No 148
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.55 E-value=3.7e-07 Score=98.40 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCceeeCCCCccccCCC-CcCCCEEEecccCCCC----C----cHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANG-NLVPHLYCIGDANGKM----M----LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~-t~~~~Vya~GD~~~~~----~----~~~~A~~qg~~aa~~i~g 442 (556)
..|.|.||.+.|+.|.++ +.+||+||+|+++++. . ....++-.|++|+++++.
T Consensus 506 t~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~ 567 (572)
T 1d4d_A 506 TMGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAK 567 (572)
T ss_dssp ECCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCeEECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHH
Confidence 578899999999988888 8999999999997431 1 234577789999998864
No 149
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.54 E-value=1.9e-07 Score=98.99 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=73.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchh--hHhhhHHHHHhhhh--hhhhhc-Ccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKA--LLAVSGRMRELQSE--HHMKAL-GLQ 172 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~--l~~~~~~~~~~~~~--~~~~~~-g~~ 172 (556)
+.++||+||||||+|+++|..|++.|++|+|||| ..++.... ...+.... ++...+..+.+... .....+ +..
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r-~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 88 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR-GLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP 88 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCC-SEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCc-eeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence 3468999999999999999999999999999999 44332110 01111111 11111111111000 000000 000
Q ss_pred ccccccC--HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ec--CCEEEEccce---EEEeCeEEEeCCCC
Q 008714 173 VHAAGYD--RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LG--PQKVKFGTDN---IVTAKDIIIATGSV 242 (556)
Q Consensus 173 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~--~~~v~~~~~~---~~~~d~lViAtG~~ 242 (556)
....... .... ..-....+...+.+.+.+.|++++.+.... .+ ..+|.+.++. ++++|+||.|.|.+
T Consensus 89 ~~~~~~~~~~~~~---~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 165 (499)
T 2qa2_A 89 VDFGVLEGAHYGV---KAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR 165 (499)
T ss_dssp EEGGGSTTCCCEE---EEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred cccccCCCCCCce---EecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence 0000000 0000 000013445556666777899999886431 22 2345554443 79999999999987
Q ss_pred CC
Q 008714 243 PF 244 (556)
Q Consensus 243 p~ 244 (556)
..
T Consensus 166 S~ 167 (499)
T 2qa2_A 166 ST 167 (499)
T ss_dssp CH
T ss_pred cH
Confidence 53
No 150
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.54 E-value=8.6e-08 Score=96.45 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=36.2
Q ss_pred ccEEEECCChHHHHHHHHHHH---cCCeEEEecC-CcCCcccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVE---KGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk-~~~GG~~~ 140 (556)
+||+|||||++|+++|+.|++ .|++|+|||| ..+||.+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~ 44 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMT 44 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGC
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCcccee
Confidence 699999999999999999999 8999999999 77888765
No 151
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.53 E-value=4.1e-07 Score=93.41 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=32.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
++||+|||||++|+++|+.|++.|++|+||||...
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 48999999999999999999999999999999544
No 152
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.53 E-value=8.4e-07 Score=90.11 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=32.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
++||+|||||++|+++|.+|++.|++|+|||+...
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 48999999999999999999999999999999543
No 153
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.52 E-value=4.9e-07 Score=93.33 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=32.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCe-EEEecC-CcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLK-TAIIEG-DVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~-V~viEk-~~~ 135 (556)
.+||+|||||++|+++|..|++.|.+ |+|||+ ..+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 48999999999999999999999999 999999 444
No 154
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.50 E-value=7.1e-07 Score=88.16 Aligned_cols=41 Identities=39% Similarity=0.485 Sum_probs=35.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~ 140 (556)
..+||+|||||++|+++|..|++. |++|+|+|+ ..+||.+.
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 357999999999999999999999 999999999 67765433
No 155
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.50 E-value=4.3e-07 Score=93.67 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=33.0
Q ss_pred CccEEEECCChHHHHHHHHHHHc--CCeEEEecCCcCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDVVG 136 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~~G 136 (556)
.+||+|||||++|+++|+.|++. |++|+|||+..++
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~ 73 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP 73 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 48999999999999999999999 9999999995443
No 156
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.47 E-value=4e-07 Score=93.58 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=31.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+||+|||||++|+++|..|++.|++|+|||+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 36 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYER 36 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999999
No 157
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.47 E-value=4.6e-07 Score=96.79 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHH-cCcEEEeceEEEe--c--CC--EEEEccceEEEeCeEEEeCCCCCCC
Q 008714 192 TKIRNNLTNSMKA-LGVDILTGVGTIL--G--PQ--KVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 192 ~~~~~~~~~~~~~-~gv~~~~g~~~~~--~--~~--~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
..+...+.+.+++ .|++++.+.++.+ + .. .|.+.+|.++.+|.||.|+|....+
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 3456667777777 8999999865533 2 22 4556666679999999999987654
No 158
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.46 E-value=4.5e-07 Score=96.95 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG 137 (556)
..+||||||||+||++||+.|++ |.+|+|||| ...+|
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g 44 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG 44 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC
Confidence 35899999999999999999999 999999999 44444
No 159
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.43 E-value=6e-07 Score=95.55 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=30.8
Q ss_pred CccEEEECCChHHHHHHHHHHH---cCCeEEEecCCcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE---KGLKTAIIEGDVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk~~~ 135 (556)
.+||||||||++|+++|..|++ .|.+|+|||+..+
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~ 39 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV 39 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence 3799999999999999999999 9999999999543
No 160
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.43 E-value=7.5e-07 Score=95.65 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.8
Q ss_pred CccEEEECCChHHHHHHHHHHH---cCCeEEEecCCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE---KGLKTAIIEGDV 134 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~---~g~~V~viEk~~ 134 (556)
.+||||||||++|+++|..|++ .|.+|+|||+..
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 5899999999999999999999 899999999944
No 161
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.43 E-value=1.1e-06 Score=99.09 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC-eEEEecCCcC----CccccccCCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDVV----GGTCVNRGCV 145 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~~----GG~~~~~g~i 145 (556)
.++||+|||||++|+++|++|++.|. +|+|||+... |++|.+.|++
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~ 53 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLV 53 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCcee
Confidence 35899999999999999999999998 9999999543 4455555543
No 162
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.40 E-value=2.1e-06 Score=85.37 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=80.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---------------CCC----CHHHHHHHHHHHhCCCceEEEc
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---------------PGF----DPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---------------~~~----d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
.+|+|||+|+.|+..|..|++.|.+|+++++.+.+. +.+ ..++...+.+.+++ .++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAK-FDQTICL 86 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTT-SCCEEEC
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHH-hCCcEEc
Confidence 579999999999999999999999999999876431 222 25677778888876 8999999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC---CCCCC
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR---APFTN 378 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~---~p~~~ 378 (556)
++.+.+++..++ ..+.+.+.++ ++.+|.||+|+|. .|+..
T Consensus 87 ~~~v~~i~~~~~-~~~~v~~~~g-------~~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 87 EQAVESVEKQAD-GVFKLVTNEE-------THYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp SCCEEEEEECTT-SCEEEEESSE-------EEEEEEEEECCTTSCCEECCC
T ss_pred cCEEEEEEECCC-CcEEEEECCC-------EEEeCEEEECCCCCcCCCCCC
Confidence 999999987643 2456777665 4999999999999 77654
No 163
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.39 E-value=1.4e-06 Score=87.68 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=74.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC---------------------CCCCC-----------HHHHHHHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL---------------------MPGFD-----------PEIGKLAQ 317 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l---------------------l~~~d-----------~~~~~~~~ 317 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++.+. .++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 37999999999999999999999999999988653 11111 57778888
Q ss_pred HHHhCCCceEEEcCceEEEEEecCCCCeEE-EEEecCCCCCCCceEecCEEEEeeCC
Q 008714 318 RVLINPRKIDYHTGVFATKITPAKDGKPVT-IELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 318 ~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~-v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
+.+++ .|+++++++.+++++..++ .+. +++.+ .++.+|.||+|+|.
T Consensus 84 ~~~~~-~~~~~~~~~~v~~i~~~~~--~~~~v~~~~-------g~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQK-YALPVLRPIRVQRVSHFGE--RLRVVARDG-------RQWLARAVISATGT 130 (357)
T ss_dssp HHHHH-TTCCEECSCCEEEEEEETT--EEEEEETTS-------CEEEEEEEEECCCS
T ss_pred HHHHH-cCCEEEcCCEEEEEEECCC--cEEEEEeCC-------CEEEeCEEEECCCC
Confidence 88776 8999999999999987532 344 54433 37999999999995
No 164
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.38 E-value=6.1e-07 Score=99.50 Aligned_cols=39 Identities=38% Similarity=0.633 Sum_probs=36.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
..+||+|||||++|+++|..|++.|++|+|+|+ +.+||.
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence 458999999999999999999999999999999 788884
No 165
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.37 E-value=1.5e-06 Score=90.77 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=38.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCC--ccccccCCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVG--GTCVNRGCV 145 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~G--G~~~~~g~i 145 (556)
.++||+|||||++|+++|..|++.| .+|+|||+ ..++ .++.+.|++
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g~S~~~~g~i 71 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSMAAF 71 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCSGGGSSCCEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCCcccCCCcEe
Confidence 3589999999999999999999999 99999999 7664 344455543
No 166
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.36 E-value=2e-06 Score=85.24 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=77.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC--CCC--------CCCC----CHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQL--------MPGF----DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~--~~l--------l~~~----d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.+|+|||+|+.|+..|..|++.|.+|+++++. ..+ .|.+ ..++.+.+.+.+++ .|++++. ..+.
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~v~ 93 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK-YEVPVLL-DIVE 93 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT-TTCCEEE-SCEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEE-EEEE
Confidence 58999999999999999999999999999985 111 1222 24666777777776 8999999 8899
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+++.++ ....+.+.++ .++.+|.||+|+|..|+..
T Consensus 94 ~i~~~~--~~~~v~~~~g------~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 94 KIENRG--DEFVVKTKRK------GEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEEC----CEEEEESSS------CEEEEEEEEECCCCEECCC
T ss_pred EEEecC--CEEEEEECCC------CEEEcCEEEECcCCCCccC
Confidence 998753 3356666665 5899999999999987654
No 167
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.35 E-value=3.4e-06 Score=84.20 Aligned_cols=96 Identities=21% Similarity=0.223 Sum_probs=75.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---------------CCC----CHHHHHHHHHHHhCCCceEEEc
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---------------PGF----DPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---------------~~~----d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.+.+.+.+ .+++++.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 84 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAP-FNPVYSL 84 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGG-GCCEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHH-cCCEEEe
Confidence 579999999999999999999999999999876441 111 14566667777765 7899999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
++.+.+++.+++ .+.+.+.++ .++.+|.||+|+|..
T Consensus 85 ~~~v~~i~~~~~--~~~v~~~~g------~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 85 GERAETLEREGD--LFKVTTSQG------NAYTAKAVIIAAGVG 120 (335)
T ss_dssp SCCEEEEEEETT--EEEEEETTS------CEEEEEEEEECCTTS
T ss_pred CCEEEEEEECCC--EEEEEECCC------CEEEeCEEEECCCCC
Confidence 999999987533 455666554 579999999999983
No 168
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.35 E-value=6.9e-06 Score=88.62 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
..+...+.+.+.+ .||+++.++.++++..+++++...+...+.. .++...+.++.||+|+|-
T Consensus 143 ~~l~~~L~~~~~~-~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~-~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 143 HALLHTLYQQNLK-NHTTIFSEWYALDLVKNQDGAVVGCTALCIE-TGEVVYFKARATVLATGG 204 (588)
T ss_dssp HHHHHHHHHHHHH-TTCEEEETEEEEEEEECTTSCEEEEEEEETT-TCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHh-CCCEEEeCcEEEEEEECCCCEEEEEEEEEcC-CCeEEEEEcCEEEECCCC
Confidence 3455566666666 7999999999999987534555556554210 112246899999999996
No 169
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.35 E-value=1.8e-06 Score=92.80 Aligned_cols=41 Identities=37% Similarity=0.674 Sum_probs=35.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~ 140 (556)
..+||+|||||++|+++|..|++.|++|+|||+. ..+|+..
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~ 58 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS 58 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence 3599999999999999999999999999999994 4445443
No 170
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.34 E-value=1.6e-06 Score=86.73 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=38.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-Cc------CCccccccCCCCch
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DV------VGGTCVNRGCVPSK 148 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~------~GG~~~~~g~ips~ 148 (556)
+||+|||||+||+.||..|++.|.+|+|||+ .. ..+.+..-.|-||.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSi 55 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSL 55 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEE
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccccCCCccccccCcCC
Confidence 6999999999999999999999999999998 32 23455566676664
No 171
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.32 E-value=4.9e-06 Score=81.34 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=76.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC---------CCCC----CHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL---------MPGF----DPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l---------l~~~----d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ++.. ..++.+.+.+.+.+..+++++.+ .++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 47999999999999999999999999999975321 1221 14666777777776337888765 8888
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++.+++ ...+++.++ .++.+|.||+|+|..|+..
T Consensus 82 i~~~~~--~~~v~~~~g------~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFG--EFIVEIDGG------RRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETT--EEEEEETTS------CEEEEEEEEECCCCEEECC
T ss_pred EEEcCC--eEEEEECCC------CEEEcCEEEECCCCCCCCC
Confidence 887533 356777665 5799999999999988754
No 172
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.32 E-value=5e-06 Score=84.00 Aligned_cols=98 Identities=21% Similarity=0.186 Sum_probs=77.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------C--------CCCC----HHHHHHHHHHHhCCCceEEEc
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------M--------PGFD----PEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l--------~~~d----~~~~~~~~~~l~~~~gV~~~~ 330 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ . +.+. .++.+.+.+.+.+ .+++++.
T Consensus 15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 93 (360)
T 3ab1_A 15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAER-YNPDVVL 93 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHT-TCCEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHH-hCCEEEc
Confidence 57999999999999999999999999999987643 1 1121 5666777777776 8999999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
++.++.++..+++ .+.+.+.++ .++.+|.||+|+|..+
T Consensus 94 ~~~v~~i~~~~~~-~~~v~~~~g------~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 94 NETVTKYTKLDDG-TFETRTNTG------NVYRSRAVLIAAGLGA 131 (360)
T ss_dssp SCCEEEEEECTTS-CEEEEETTS------CEEEEEEEEECCTTCS
T ss_pred CCEEEEEEECCCc-eEEEEECCC------cEEEeeEEEEccCCCc
Confidence 9999999875332 456776665 5799999999999843
No 173
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.32 E-value=5.5e-06 Score=87.77 Aligned_cols=36 Identities=36% Similarity=0.664 Sum_probs=32.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~G 136 (556)
++||+|||||++|+++|..|++.|++|+|||+..++
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~ 38 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLA 38 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 489999999999999999999999999999995443
No 174
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.31 E-value=2.4e-06 Score=85.31 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC----CC------------CCCCC-----HHHHHHHHHHHhCCCceE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD----QL------------MPGFD-----PEIGKLAQRVLINPRKID 327 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~----~l------------l~~~d-----~~~~~~~~~~l~~~~gV~ 327 (556)
.++|+|||+|+.|+..|..|++.|.+|+++++.+ .+ +|.+. .++...+.+.+++ .|++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~ 100 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTK-FGTE 100 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHH-TTCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHH-cCCE
Confidence 4689999999999999999999999999999843 11 12322 4677778888877 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++.++ +.+++.. +..+.+.+.+. ....++.+|.+|+|+|..|...
T Consensus 101 i~~~~-v~~i~~~--~~~~~v~~~~~---~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 101 IITET-VSKVDLS--SKPFKLWTEFN---EDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp EECSC-EEEEECS--SSSEEEEETTC---SSSCCEEEEEEEECCCEEECCC
T ss_pred EEEeE-EEEEEEc--CCEEEEEEEec---CCCcEEEeCEEEECcCCCcCCC
Confidence 99988 8888764 33455655321 1125789999999999988764
No 175
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.30 E-value=2.8e-06 Score=86.27 Aligned_cols=91 Identities=25% Similarity=0.303 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+++|+ +.+.. ++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~~- 182 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----------------------------------------LD- 182 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----------------------------------------CC-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc----------------------------------------CC-
Confidence 5799999999999999999999999999998 32110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEecCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
+++...+.+.+++.||+++.+.. ...+...|.+.+++ +.+|.||+|+|..|+.
T Consensus 183 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 183 -----------EELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp -----------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECC
T ss_pred -----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCH
Confidence 23344555667788999998853 34445678888877 9999999999998875
No 176
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=98.30 E-value=4.2e-06 Score=89.53 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=80.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC--------CC-------------CC----------------HHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--------PG-------------FD----------------PEI 312 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll--------~~-------------~d----------------~~~ 312 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |+ +. +++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 479999999999999999999999999999865431 11 11 356
Q ss_pred HHHHHHHHhCCCce--EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC--CCCCCC
Q 008714 313 GKLAQRVLINPRKI--DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG--RAPFTN 378 (556)
Q Consensus 313 ~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G--~~p~~~ 378 (556)
.+++.+..++ .++ .+++++.|++++.+++.....|++.+| .++.+|.||+|+| ..|+..
T Consensus 102 ~~yl~~~~~~-~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G------~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 102 LAYLEHVADR-FDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG------DEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp HHHHHHHHHH-TTCGGGEECSCCEEEEEEETTTTEEEEEETTC------CEEEEEEEEECCCSEEECCCC
T ss_pred HHHHHHHHHH-cCCCccEEECCEEEEEEEcCCCCEEEEEECCC------CEEEeCEEEECcCCCCCCCCC
Confidence 6677777766 777 789999999998876656677888776 5799999999999 566544
No 177
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.30 E-value=3.7e-06 Score=91.81 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=31.6
Q ss_pred CCccEEEECCChHHHHHHHHHHH-cCCeEEEecC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEG 132 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viEk 132 (556)
.++||+|||||++|+++|..|++ .|++|+||||
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr 64 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQ 64 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 46899999999999999999999 9999999999
No 178
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.29 E-value=4e-07 Score=96.82 Aligned_cols=41 Identities=32% Similarity=0.513 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHc-CCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk-~~~GG~~~ 140 (556)
..+||||||||++||+||..|++. |++|+|+|+ +.+||.|.
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence 358999999999999999999985 999999999 89999875
No 179
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.27 E-value=2.7e-06 Score=90.44 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=78.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC------------------------------------C------C
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL------------------------------------M------P 306 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l------------------------------------l------~ 306 (556)
..+|+|||+|+.|+.+|..|++.|.+|+++++++.+ + +
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987532 0 0
Q ss_pred CC------------------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCC
Q 008714 307 GF------------------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356 (556)
Q Consensus 307 ~~------------------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~ 356 (556)
.+ ..++.+.+.+.+++ .|+++++++.++++..+ +++...|++.+|
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~-~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G--- 261 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIE-LGGEIRFSTRVDDLHME-DGQITGVTLSNG--- 261 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHH-TTCEEESSCCEEEEEES-SSBEEEEEETTS---
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEEe-CCEEEEEEECCC---
Confidence 00 03445566666766 79999999999999875 445556778776
Q ss_pred CCCceEecCEEEEeeCCCCC
Q 008714 357 EPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 357 ~~~~~i~~D~vi~a~G~~p~ 376 (556)
+++.+|.||+|+|..+.
T Consensus 262 ---~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 262 ---EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp ---CEEECSCEEECCCTTCH
T ss_pred ---CEEECCEEEECCCCChh
Confidence 57999999999999884
No 180
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.27 E-value=2.4e-06 Score=92.42 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=33.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG 137 (556)
..+||||||||+||++||+.|++.|.+|+|||| ...+|
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g 55 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRS 55 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 358999999999999999999999999999999 44443
No 181
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.26 E-value=6.5e-06 Score=81.20 Aligned_cols=98 Identities=21% Similarity=0.206 Sum_probs=75.3
Q ss_pred eEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCC-----------CCCCC----C-HHHHHHHHHHHhCCCceEEEcCce
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-----------LMPGF----D-PEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~-----------ll~~~----d-~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
+|+|||+|+.|+.+|..|++.|. +|+++++... ..|.+ + .++.+.+.+.+.+ .|++++. ..
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~v~~~~-~~ 80 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFR-FGLKHEM-TA 80 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHT-TSCEEEC-SC
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHH-cCCEEEE-EE
Confidence 69999999999999999999999 9999997521 12222 2 4566677777776 8999988 68
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+..++.++ +.+.+.+.++ .++.+|.||+|+|..|...
T Consensus 81 v~~i~~~~--~~~~v~~~~g------~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 81 VQRVSKKD--SHFVILAEDG------KTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp EEEEEEET--TEEEEEETTS------CEEEEEEEEECCCEEECCC
T ss_pred EEEEEEcC--CEEEEEEcCC------CEEECCEEEECCCCCCCCC
Confidence 88887643 3355666655 5799999999999888654
No 182
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.26 E-value=2.9e-06 Score=90.96 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=33.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G 136 (556)
.++||+|||||++|+++|..|++.|.+|+|||| ..++
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 358999999999999999999999999999999 4443
No 183
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=98.25 E-value=5.1e-06 Score=88.67 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=80.3
Q ss_pred CeEEEEcCchhHHHHHHHHH-hCCCeEEEEEeCCCCC--------CC-------------C----------------CHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYT-ALGSEVTFIEALDQLM--------PG-------------F----------------DPE 311 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~-~~g~~Vtli~~~~~ll--------~~-------------~----------------d~~ 311 (556)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+. |. + .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 9999999999876431 11 1 135
Q ss_pred HHHHHHHHHhCCCce--EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC--CCCCC
Q 008714 312 IGKLAQRVLINPRKI--DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTN 378 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~ 378 (556)
+.+.+.+..++ .|+ .+++++.|++++.++++....|++.+| +++.+|.||+|+|. .|...
T Consensus 89 i~~~l~~~~~~-~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G------~~i~ad~lV~AtG~~s~p~~p 152 (540)
T 3gwf_A 89 ILEYLEDVVDR-FDLRRHFKFGTEVTSALYLDDENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFP 152 (540)
T ss_dssp HHHHHHHHHHH-TTCGGGEEESCCEEEEEEETTTTEEEEEETTS------CEEEEEEEEECCCSCCSBCCC
T ss_pred HHHHHHHHHHH-cCCcceeEeccEEEEEEEeCCCCEEEEEEcCC------CEEEeCEEEECCcccccCCCC
Confidence 66667777766 787 889999999998876656677888776 57999999999994 66543
No 184
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.24 E-value=5.6e-06 Score=85.31 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=70.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|+|||||+.|+.+|..|++.|.+|+++|+ +.+... .++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~ 186 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------------------------------AAP 186 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------------------------------TSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc--------------------------------------ccC
Confidence 35899999999999999999999999999998 332110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.++...+.+.+++.||+++.+... .+....|.+.+++++.+|.||+|+|..|..
T Consensus 187 ------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 187 ------------ATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp ------------HHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECC
T ss_pred ------------HHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccH
Confidence 223344556677789999998532 222337778888899999999999998764
No 185
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.23 E-value=3.1e-06 Score=88.56 Aligned_cols=94 Identities=23% Similarity=0.409 Sum_probs=67.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ +.+. | ..+
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~------------------------------~~~- 207 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL---------P------------------------------TMD- 207 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc---------c------------------------------ccC-
Confidence 5799999999999999999999999999998 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +.. .+.+.++.++.+|.||+|+|.+|+.+
T Consensus 208 -----------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~ 267 (455)
T 2yqu_A 208 -----------LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE 267 (455)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence 123334455666779999987532 22 222 34445677899999999999988764
No 186
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.23 E-value=6.4e-06 Score=89.79 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=32.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~ 134 (556)
++||||||||.+|++||+.|++.|.+|+||||..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~ 38 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 5899999999999999999999999999999943
No 187
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.22 E-value=5.8e-06 Score=81.50 Aligned_cols=101 Identities=20% Similarity=0.144 Sum_probs=76.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC--CC--------CCC----CCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD--QL--------MPG----FDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~--~l--------l~~----~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+|+|||+|+.|+.+|..|++.|.+|+++++.. .+ ++. ..+++.+.+.+.+++ .|++++.++.+..
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~~ 81 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE-YDVDVIDSQSASK 81 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT-SCEEEECSCCEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHH-cCCeEEccCEEEE
Confidence 68999999999999999999999999996531 00 011 124666777777776 8999999999999
Q ss_pred EEecCC-CCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 337 ITPAKD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 337 i~~~~~-g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++.+.+ +....+.+.++ .++.+|.+|+|+|..|...
T Consensus 82 i~~~~~~~~~~~v~~~~g------~~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 82 LIPAAVEGGLHQIETASG------AVLKARSIIVATGAKWRNM 118 (310)
T ss_dssp EECCSSTTCCEEEEETTS------CEEEEEEEEECCCEEECCC
T ss_pred EEecccCCceEEEEECCC------CEEEeCEEEECcCCCcCCC
Confidence 975422 23456777665 5799999999999987653
No 188
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.21 E-value=5.4e-06 Score=86.93 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=78.2
Q ss_pred CeEEEEcCchhHHHHHHHHHh---CCCe---EEEEEeCCCCC-------------------------------------C
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA---LGSE---VTFIEALDQLM-------------------------------------P 306 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~---~g~~---Vtli~~~~~ll-------------------------------------~ 306 (556)
++|+|||+|+.|+..|..|++ .|.+ |+++++.+.+. +
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 99999876431 0
Q ss_pred CCC---------------HHHHHHHHHHHhCCCceE--EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 307 GFD---------------PEIGKLAQRVLINPRKID--YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 307 ~~d---------------~~~~~~~~~~l~~~~gV~--~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
.++ .++.+.+.+.+++ .|++ +++++.|+.++..+++....|++.++.. +...++.+|.||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~-g~~~~~~~d~VVv 160 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEK-AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT-DTIYSEEFDYVVC 160 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHH-HTCGGGEECSEEEEEEEEETTTTEEEEEEEETTT-TEEEEEEESEEEE
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHH-cCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCC-CceEEEEcCEEEE
Confidence 010 3455566666665 6787 8899999999876443345677665311 1124789999999
Q ss_pred eeC--CCCCCC
Q 008714 370 ATG--RAPFTN 378 (556)
Q Consensus 370 a~G--~~p~~~ 378 (556)
|+| ..|+..
T Consensus 161 AtG~~s~p~~p 171 (464)
T 2xve_A 161 CTGHFSTPYVP 171 (464)
T ss_dssp CCCSSSSBCCC
T ss_pred CCCCCCCCccC
Confidence 999 677754
No 189
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.21 E-value=2.9e-06 Score=88.24 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=71.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..++++|.+|+|+|+ +.+... ++
T Consensus 148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~---------------------------------------~d- 187 (437)
T 4eqs_A 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL---------------------------------------MD- 187 (437)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT---------------------------------------SC-
T ss_pred cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc---------------------------------------cc-
Confidence 4799999999999999999999999999998 332110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
+++...+.+.+++.||+++.+... ..+...+.+.+++++.+|.|++|+|..|+.
T Consensus 188 -----------~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~ 242 (437)
T 4eqs_A 188 -----------ADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNS 242 (437)
T ss_dssp -----------GGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESC
T ss_pred -----------chhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCc
Confidence 112233455667789999988654 456778888899999999999999998864
No 190
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.19 E-value=5.7e-06 Score=86.78 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=68.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|||+ +.+.. .++
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 209 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP---------------------------------------QGD- 209 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------------TSC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 33111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEc-c--ce--EEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFG-T--DN--IVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~-~--~~--~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .+ +.. .+.+. + ++ ++.+|.||+|+|.+|+..
T Consensus 210 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 210 -----------PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred -----------HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 223344556677789999998543 22 222 34443 4 55 799999999999988765
No 191
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.19 E-value=5.2e-06 Score=86.95 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=67.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ +.+.. .++
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 211 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP---------------------------------------TYD- 211 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------------------------------TSC-
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 33211 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p~ 247 (556)
+.+...+.+.+++.||+++.+... .++...+.+. +| .++.+|.||+|+|.+|+.+.
T Consensus 212 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 212 -----------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 123334455667789999988543 2222224433 45 57999999999999987653
No 192
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.19 E-value=9.1e-06 Score=84.79 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCC--eEEEEEeCCCCCC-----C----------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGS--EVTFIEALDQLMP-----G---------------------------------- 307 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~--~Vtli~~~~~ll~-----~---------------------------------- 307 (556)
..+|+|||+|++|+.+|..|++.|. +|+++++.+.+.. .
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 4789999999999999999999999 9999998753310 0
Q ss_pred -------------C--------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCC-C
Q 008714 308 -------------F--------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEP-K 359 (556)
Q Consensus 308 -------------~--------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~-~ 359 (556)
+ ..++.+++.+..++ .++.+++++.|++++..+ ....|++.+.. +++ .
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~t~V~~v~~~~--~~~~V~~~~~~-~G~~~ 161 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP-LLPFIKLATDVLDIEKKD--GSWVVTYKGTK-AGSPI 161 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGG-GGGGEECSEEEEEEEEET--TEEEEEEEESS-TTCCE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hhCeEEeCCEEEEEEeCC--CeEEEEEeecC-CCCee
Confidence 0 01455666666665 577888999999998753 33566666511 011 1
Q ss_pred ceEecCEEEEeeCC--CCCCC
Q 008714 360 DTLEVDAALIATGR--APFTN 378 (556)
Q Consensus 360 ~~i~~D~vi~a~G~--~p~~~ 378 (556)
.++.+|.||+|+|. .|+..
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIP 182 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBC
T ss_pred EEEEeCEEEECCCCCCCCCCC
Confidence 37899999999998 67654
No 193
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.18 E-value=8.7e-06 Score=80.24 Aligned_cols=99 Identities=22% Similarity=0.142 Sum_probs=75.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEE-EEeCCCC------------CCCCC-----HHHHHHHHHHHhCCCceEEEcC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTF-IEALDQL------------MPGFD-----PEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtl-i~~~~~l------------l~~~d-----~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
.+|+|||+|+.|+..|..|++.|.+|++ +++. .+ .|.+. .++...+.+.+++ .+++++.+
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 82 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMR-FGLKHEMV 82 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTT-TCCEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHH-cCcEEEEE
Confidence 5899999999999999999999999999 8863 22 23333 5677788888876 89999988
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.+.++ .+++.....+.+..+ . ++.+|.+|+|+|..|+..
T Consensus 83 -~v~~i-~~~~~~~~~v~~~~~-----~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 -GVEQI-LKNSDGSFTIKLEGG-----K-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp -CEEEE-EECTTSCEEEEETTS-----C-EEEEEEEEECCCEEECCC
T ss_pred -EEEEE-ecCCCCcEEEEEecC-----C-EEEeCEEEEeeCCCCCCC
Confidence 78888 543113344434433 2 789999999999988754
No 194
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.18 E-value=8.8e-06 Score=85.13 Aligned_cols=94 Identities=20% Similarity=0.362 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ +.+. | .++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~~- 210 (455)
T 1ebd_A 171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------S------------------------------GFE- 210 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc---------c------------------------------ccC-
Confidence 5899999999999999999999999999998 3321 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEc---cceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFG---TDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~---~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .. +.. .+.+. ++.++.+|.||+|+|.+|+..
T Consensus 211 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 211 -----------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 223344555677789999988643 22 222 23332 456899999999999988754
No 195
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.18 E-value=9.3e-06 Score=80.71 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=75.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-----------CCCCC-----CHHHHHHHHHHHhCCCceEEEcCce
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-----------LMPGF-----DPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-----------ll~~~-----d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.+|+|||+|+.|+..|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++ .|++++. ..
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~-~~ 86 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEK-FGAKVEM-DE 86 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHH-TTCEEEE-CC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHH-cCCEEEe-ee
Confidence 5799999999999999999999999999998721 12222 23566667777766 7999987 57
Q ss_pred EEEEEecCCCC-eEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGK-PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~-~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+.+++...++. .+.+.+.++ .++.+|.||+|+|..|...
T Consensus 87 v~~i~~~~~~~~~~~v~~~~g------~~~~~~~vv~AtG~~~~~~ 126 (325)
T 2q7v_A 87 VQGVQHDATSHPYPFTVRGYN------GEYRAKAVILATGADPRKL 126 (325)
T ss_dssp EEEEEECTTSSSCCEEEEESS------CEEEEEEEEECCCEEECCC
T ss_pred EEEEEeccCCCceEEEEECCC------CEEEeCEEEECcCCCcCCC
Confidence 88887641022 145556665 5899999999999987654
No 196
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.17 E-value=8.2e-07 Score=94.16 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
..+.+.+.+.+++ .|++|++++.|++|..+ +++...|++.|| +++.+|.||.+++...
T Consensus 221 ~~l~~aL~~~~~~-~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g------~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 221 GALVQGMIKLFQD-LGGEVVLNARVSHMETT-GNKIEAVHLEDG------RRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHH-TTCEEECSCCEEEEEEE-TTEEEEEEETTS------CEEECSCEEECCC---
T ss_pred cchHHHHHHHHHH-hCCceeeecceeEEEee-CCeEEEEEecCC------cEEEcCEEEECCCHHH
Confidence 3466777777776 89999999999999876 556666888887 7899999998876543
No 197
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.17 E-value=9.3e-06 Score=82.71 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----------------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------------------------------------- 307 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~----------------------------------------- 307 (556)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred ---CC-----------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 308 ---FD-----------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 308 ---~d-----------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
++ .++.+.+.+.+.+ .||+++.++.+++++. ++ .+++.+| .++.+|.||.|+|.
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~--~~---~v~~~~g------~~~~ad~vV~AdG~ 158 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARA-LGVDISVNSEAVAADP--VG---RLTLQTG------EVLEADLIVGADGV 158 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHH-TTCEEESSCCEEEEET--TT---EEEETTS------CEEECSEEEECCCT
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEe--CC---EEEECCC------CEEEcCEEEECCCc
Confidence 00 3345666677766 7999999999999976 33 5677666 57999999999998
Q ss_pred CCCC
Q 008714 374 APFT 377 (556)
Q Consensus 374 ~p~~ 377 (556)
.+..
T Consensus 159 ~s~v 162 (379)
T 3alj_A 159 GSKV 162 (379)
T ss_dssp TCHH
T ss_pred cHHH
Confidence 7754
No 198
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.16 E-value=7.6e-06 Score=85.47 Aligned_cols=94 Identities=22% Similarity=0.210 Sum_probs=69.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+|+|+ +.+.. .++
T Consensus 168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 207 (450)
T 1ges_A 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP---------------------------------------SFD- 207 (450)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh---------------------------------------hhh-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC---CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP---QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~---~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +. ..|.+.+++++.+|.||+|+|.+|+..
T Consensus 208 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 208 -----------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp -----------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 123334455667789999988532 22 21 356677778899999999999998764
No 199
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.16 E-value=2.1e-06 Score=89.37 Aligned_cols=97 Identities=26% Similarity=0.338 Sum_probs=73.4
Q ss_pred CeEEEEcCchhHHHHHHHHHh---CCCeEEEEEeCCCC--CCC--------CC-HHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA---LGSEVTFIEALDQL--MPG--------FD-PEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~---~g~~Vtli~~~~~l--l~~--------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
++|+|||||+.|+..|..|++ .|.+|+++++.+.+ .|. .+ .++...+.+.+++ .||+++. ..++
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~gv~~~~-~~v~ 82 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVER-KGIHFIA-QSAE 82 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHT-TTCEEEC-SCEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHH-CCCEEEE-eEEE
Confidence 689999999999999999999 78999999988754 111 11 2232334556665 8999985 5888
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.++.+. + .|++.++ .++.+|.||+|+|.+|+..
T Consensus 83 ~id~~~--~--~V~~~~g------~~i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 83 QIDAEA--Q--NITLADG------NTVHYDYLMIATGPKLAFE 115 (437)
T ss_dssp EEETTT--T--EEEETTS------CEEECSEEEECCCCEECGG
T ss_pred EEEcCC--C--EEEECCC------CEEECCEEEECCCCCcCcc
Confidence 887642 2 4667665 5799999999999988754
No 200
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.16 E-value=1.6e-06 Score=90.75 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=39.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+..+||||||||.+||+||..|++.|++|+|+|+ +.+||.+..
T Consensus 9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 3468999999999999999999999999999999 899998764
No 201
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.16 E-value=6.2e-06 Score=84.25 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=69.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||+|+.|+.+|..|++.|.+|+++|+ +.+.... .+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~--------------------------------------~~ 186 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL--------------------------------------LH 186 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT--------------------------------------SC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc--------------------------------------cC
Confidence 36899999999999999999999999999998 3321100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
..+...+.+.+++.||+++.+... .+ +. ..+.+.+++++.+|.||+|+|..|..
T Consensus 187 ------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 187 ------------PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp ------------HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred ------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 223344555667789999988532 22 22 25666778889999999999998765
No 202
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.16 E-value=6.2e-06 Score=86.07 Aligned_cols=95 Identities=28% Similarity=0.315 Sum_probs=68.1
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||||++|+.+|..|++.|.+|+|+|+ +.+... .++
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~ 190 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV--------------------------------------YLD 190 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------------TCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc--------------------------------------cCC
Confidence 46899999999999999999999999999998 322110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +. ..+.+ ++.++.+|.||+|+|.+|+.+
T Consensus 191 ------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 191 ------------KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp ------------HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred ------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence 223445556677789999987532 22 21 13444 456899999999999988754
No 203
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.15 E-value=4.6e-06 Score=89.15 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=77.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC--------C-----------------------C------CCHHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--------P-----------------------G------FDPEI 312 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll--------~-----------------------~------~d~~~ 312 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | . -.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999876431 1 0 12456
Q ss_pred HHHHHHHHhCCCce--EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC--CCCCCC
Q 008714 313 GKLAQRVLINPRKI--DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG--RAPFTN 378 (556)
Q Consensus 313 ~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G--~~p~~~ 378 (556)
.+.+.+..++ .++ .+++++.|++++.+++.....|++.+| +++.+|.||+|+| .+|+..
T Consensus 90 ~~yl~~~~~~-~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G------~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 90 LRYVNRAADA-MDVRKHYRFNTRVTAARYVENDRLWEVTLDNE------EVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp HHHHHHHHHH-HTCGGGEECSCCEEEEEEEGGGTEEEEEETTT------EEEEEEEEEECCCSCBC---C
T ss_pred HHHHHHHHHH-cCCcCcEEECCEEEEEEEeCCCCEEEEEECCC------CEEEeCEEEECcCCCCCCcCC
Confidence 6666666655 666 788899999998765555677888776 6899999999999 566654
No 204
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.14 E-value=1.5e-05 Score=80.57 Aligned_cols=97 Identities=22% Similarity=0.313 Sum_probs=72.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCC------------CC-CCC-------C--------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALD------------QL-MPG-------F-------------------- 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~------------~l-l~~-------~-------------------- 308 (556)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ ++ .+. +
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 479999999999999999999998 999999875 00 000 0
Q ss_pred -C-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 309 -D-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 309 -d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+ .++...+.+.+++ .|++++.++.+.+++..+++ ..|.+.++ ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-------~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANH-YELNIFENTVVTNISADDAY--YTIATTTE-------TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHH-TTCEEECSCCEEEEEECSSS--EEEEESSC-------CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHH-cCCeEEeCCEEEEEEECCCe--EEEEeCCC-------EEEeCEEEECCCCCCc
Confidence 1 2344556666665 79999999999999875332 45555432 5899999999998754
No 205
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.14 E-value=4.1e-06 Score=86.43 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=75.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC---------------------------CC-------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------------------------GF------------- 308 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~---------------------------~~------------- 308 (556)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 35799999999999999999999999999998765310 00
Q ss_pred ------------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEec
Q 008714 309 ------------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 309 ------------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
..++.+.+.+.+++ .||++++++.|+++..+++ .+.|++.++ ++.+
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~-~Gv~i~~~~~V~~i~~~~~--~~~V~~~~g-------~i~a 176 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKE-AGVQLRLETSIGEVERTAS--GFRVTTSAG-------TVDA 176 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHH-HTCEEECSCCEEEEEEETT--EEEEEETTE-------EEEE
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEeCC--EEEEEECCc-------EEEe
Confidence 01455566666766 7999999999999987533 356665443 7999
Q ss_pred CEEEEeeCCCCC
Q 008714 365 DAALIATGRAPF 376 (556)
Q Consensus 365 D~vi~a~G~~p~ 376 (556)
|.||+|+|..+.
T Consensus 177 d~VIlAtG~~S~ 188 (417)
T 3v76_A 177 ASLVVASGGKSI 188 (417)
T ss_dssp SEEEECCCCSSC
T ss_pred eEEEECCCCccC
Confidence 999999998763
No 206
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=98.14 E-value=1.7e-06 Score=88.83 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=39.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHc-CCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk-~~~GG~~~~ 141 (556)
..++||+|||||++|++||..|++. |.+|+|+|+ +.+||.|..
T Consensus 5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 3468999999999999999999999 999999999 799999874
No 207
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.14 E-value=1.4e-05 Score=87.14 Aligned_cols=36 Identities=42% Similarity=0.733 Sum_probs=32.3
Q ss_pred CCccEEEECCChHHHHHHHHHH---H-cCCeEEEecCCcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAV---E-KGLKTAIIEGDVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~---~-~g~~V~viEk~~~ 135 (556)
.++||||||||+||++||+.|+ + .|.+|+||||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 3589999999999999999999 6 8999999999544
No 208
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.13 E-value=7.7e-06 Score=84.32 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=70.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|+|||+|+.|+.+|..|++.|.+|+++|+ +.+.... +
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~--------------------------------------~- 183 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV--------------------------------------L- 183 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH--------------------------------------H-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh--------------------------------------c-
Confidence 35899999999999999999999999999998 3211000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Eec----CCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG----PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
...+...+.+.+++.||+++.+... .+. ...|.+.+++++.+|.||+|+|..|..
T Consensus 184 -----------~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 184 -----------GRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp -----------CHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred -----------CHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 0234445566677789999987543 222 126788888899999999999998874
No 209
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.13 E-value=7.6e-06 Score=85.80 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=69.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++|+ +.+.. .++
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~---------------------------------------~~~- 206 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF---------------------------------------QFD- 206 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------------------------------------TSC-
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc---------------------------------------ccC-
Confidence 4799999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CCEEEEccce-EEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQKVKFGTDN-IVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~~v~~~~~~-~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ + ...|.+.+++ ++.+|.||+|+|.+|+..
T Consensus 207 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 207 -----------PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence 122234455667789999988532 22 1 1356667777 899999999999998764
No 210
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.11 E-value=1.1e-05 Score=85.04 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=68.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+|||+ +.+.. .++
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 223 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA---------------------------------------SMD- 223 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS---------------------------------------SSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 33211 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----cCC--EEEEc-----cceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQ--KVKFG-----TDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~~~--~v~~~-----~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +.. .+.+. ++.++.+|.||+|+|.+|+..
T Consensus 224 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 224 -----------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 233444556677789999998543 22 222 34443 456799999999999988764
No 211
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.11 E-value=1.5e-06 Score=89.58 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=74.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh---CCCeEEEEEeCCCCC--CC---------CCHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA---LGSEVTFIEALDQLM--PG---------FDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~---~g~~Vtli~~~~~ll--~~---------~d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+.+ .|++++.+ .++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~-~v~ 79 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPE-KGIQFQEG-TVE 79 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGG-GTCEEEEC-EEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhh-CCeEEEEe-eEE
Confidence 579999999999999999999 899999999887531 11 112333445666665 79999988 888
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.++.+ ++ .|++.++. +...++.+|.||+|+|.+|+..
T Consensus 80 ~i~~~--~~--~V~~~~g~--~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 80 KIDAK--SS--MVYYTKPD--GSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EEETT--TT--EEEEECTT--SCEEEEECSEEEECCCCEECGG
T ss_pred EEeCC--CC--EEEEccCC--cccceeeCCEEEECCCCCcCcc
Confidence 88764 22 35566552 1224589999999999988764
No 212
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.10 E-value=1.1e-05 Score=82.90 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=69.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||+|+.|+.+|..|++.|.+|+++++ +.+... ..+
T Consensus 143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------------------------------~~~- 183 (404)
T 3fg2_P 143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR--------------------------------------VVT- 183 (404)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh--------------------------------------ccC-
Confidence 5799999999999999999999999999998 321110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC---CEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP---QKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~---~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
..+...+.+.+++.||+++.+... .. +. ..|.+.+|+++.+|.||+|+|..|..
T Consensus 184 -----------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 184 -----------PEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred -----------HHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence 234445566777889999988432 22 11 24677788899999999999998765
No 213
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.10 E-value=2.7e-06 Score=86.89 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=73.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHH-------------HHHHHHhCCCceEEEcCceEEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGK-------------LAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~-------------~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
.+|+|||+|+.|+.+|..|...+.+|+++++.+.+. ...+.+.+ ...+.+++ .+|++++++++++
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~-y~~~~l~~~l~g~~~~~~l~~~~~~~~~~-~~i~~~~~~~V~~ 87 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP-YYRPRLNEIIAKNKSIDDILIKKNDWYEK-NNIKVITSEFATS 87 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC-BCGGGHHHHHHSCCCGGGTBSSCHHHHHH-TTCEEECSCCEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC-cccChhhHHHcCCCCHHHccCCCHHHHHH-CCCEEEeCCEEEE
Confidence 579999999999999999988889999999887541 11111221 12334444 7999999999999
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
|+.+. + .|++.+| +++.+|.+|+|||.+|...
T Consensus 88 id~~~--~--~v~~~~g------~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 88 IDPNN--K--LVTLKSG------EKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp EETTT--T--EEEETTS------CEEECSEEEECCCEEECCC
T ss_pred EECCC--C--EEEECCC------CEEECCEEEEecCCCcCCC
Confidence 98642 2 4667776 6899999999999988764
No 214
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.09 E-value=1.6e-05 Score=81.98 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=70.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||+|+.|+.+|..|++.|.+|+++|+ +.+... ..+
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~--------------------------------------~~~ 193 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR--------------------------------------VAG 193 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------------TSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh--------------------------------------hcC
Confidence 35799999999999999999999999999998 321110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC-C--EEEEccceEEEeCeEEEeCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP-Q--KVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~-~--~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
..+...+.+.+++.||+++.+... .+ +. . .|.+.+++++.+|.||+|+|..|..
T Consensus 194 ------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 194 ------------EALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp ------------HHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred ------------HHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 234445566677889999987543 22 22 2 5777788899999999999998875
No 215
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=98.09 E-value=2.7e-06 Score=86.81 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=39.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
...+||+|||||++|+++|..|++.|.+|+|+|+ +.+||.|.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccc
Confidence 3468999999999999999999999999999999 78999886
No 216
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.08 E-value=2.2e-06 Score=91.32 Aligned_cols=42 Identities=31% Similarity=0.601 Sum_probs=38.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
.++||+|||||++||+||..|++.|++|+|+|+ +.+||.+..
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence 347999999999999999999999999999999 899998753
No 217
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=98.08 E-value=2.9e-06 Score=87.84 Aligned_cols=42 Identities=38% Similarity=0.584 Sum_probs=38.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~GG~~~~ 141 (556)
..+||+|||||++||+||..|++.| .+|+|+|+ +.+||.+..
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t 48 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS 48 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence 3479999999999999999999999 99999999 899998763
No 218
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.08 E-value=2.1e-05 Score=77.41 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=69.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC---C---CCC-------CCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ---L---MPG-------FDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~---l---l~~-------~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
.|+|||+|+.|+..|..+++.|.+|+++++... + .|. ..+++.+...+.+.+..++.+... .+..+
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 86 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMI 86 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEEe
Confidence 489999999999999999999999999997531 1 111 124555555555655345666554 45555
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
...+++ ..++.+.++ +++.+|.||+|||.+|...
T Consensus 87 ~~~~~~-~~~v~~~~g------~~~~a~~liiATGs~p~~p 120 (304)
T 4fk1_A 87 TKQSTG-LFEIVTKDH------TKYLAERVLLATGMQEEFP 120 (304)
T ss_dssp EECTTS-CEEEEETTC------CEEEEEEEEECCCCEEECC
T ss_pred eecCCC-cEEEEECCC------CEEEeCEEEEccCCccccc
Confidence 544333 356777666 6899999999999988654
No 219
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.07 E-value=2e-05 Score=80.80 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=73.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC------CCHHHHHHHHHH-----------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------FDPEIGKLAQRV----------------------- 319 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~------~d~~~~~~~~~~----------------------- 319 (556)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+...+. +.+...+.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999988764221 233333332221
Q ss_pred --------------------HhC-CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 320 --------------------LIN-PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 320 --------------------l~~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
|.+ ..++++++++++++++.++++ +.+++.+| .++.+|.||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g------~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDG------TKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTS------CEEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCC------CEEECCEEEECCCcchh
Confidence 110 026788999999999875433 67888776 57999999999998764
No 220
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=98.05 E-value=3e-06 Score=88.05 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHh--CCCeEEEEEeCCCCCCC----------C-CHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTA--LGSEVTFIEALDQLMPG----------F-DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtli~~~~~ll~~----------~-d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.++|+|||+|+.|+..|..|++ .|.+|+++++.+.+... . ..++...+.+.+++ .||+++.+ .++
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gv~~~~~-~v~ 79 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPK-FNIEFINE-KAE 79 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGG-GTEEEECS-CEE
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccCHHHHHHHHHHHHHh-cCCEEEEE-EEE
Confidence 3689999999999999999999 78999999998764211 0 01111122334444 78999875 788
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 379 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 379 (556)
.++.+ .+ .+.+.++ .++.+|.+|+|+|.+|+...
T Consensus 80 ~id~~--~~--~v~~~~g------~~i~~d~liiAtG~~~~~pg 113 (430)
T 3h28_A 80 SIDPD--AN--TVTTQSG------KKIEYDYLVIATGPKLVFGA 113 (430)
T ss_dssp EEETT--TT--EEEETTC------CEEECSEEEECCCCEEECCS
T ss_pred EEECC--CC--EEEECCC------cEEECCEEEEcCCcccccCC
Confidence 88764 22 4666665 57999999999999988653
No 221
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.04 E-value=2.5e-05 Score=77.27 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=73.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC-----------CCCCCC-----CHHHHHHHHHHHhCCCceEEEcCce
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD-----------QLMPGF-----DPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~-----------~ll~~~-----d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.. ..+|.+ .+++.+.+.+.+.+ .+++++.+.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 83 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATK-FETEIIFDH- 83 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHH-TTCEEECCC-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEEee-
Confidence 479999999999999999999999999998531 012222 24566666777766 899999886
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+..++... ..+.+ +.++ .++.+|.|++|+|..|...
T Consensus 84 v~~i~~~~--~~~~v-~~~~------~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 84 INKVDLQN--RPFRL-NGDN------GEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEEECSS--SSEEE-EESS------CEEEEEEEEECCCEEECCC
T ss_pred eeEEEecC--CEEEE-EeCC------CEEEcCEEEECCCCCcCCC
Confidence 88887642 33455 4554 5799999999999988654
No 222
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.04 E-value=2e-05 Score=80.77 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=76.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC----------------------------------------C--
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------------------------------------G-- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~----------------------------------------~-- 307 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+ +
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998754300 0
Q ss_pred -----------------CC-HHHHHHHHHHHhCCC-ceEEEcCceEEEEEecCCCCeE-EEEEecCCCCCCCceEecCEE
Q 008714 308 -----------------FD-PEIGKLAQRVLINPR-KIDYHTGVFATKITPAKDGKPV-TIELIDAKTKEPKDTLEVDAA 367 (556)
Q Consensus 308 -----------------~d-~~~~~~~~~~l~~~~-gV~~~~~~~v~~i~~~~~g~~~-~v~~~~g~~~~~~~~i~~D~v 367 (556)
++ .++.+.+.+.+.+ . |++++.++++++++.++++ .+ .+++.+| +++.+|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g------~~~~ad~v 158 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDG-EATVEMLFETRIEAVQRDERH-AIDQVRLNDG------RVLRPRVV 158 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTT-CTTEEEECSCCEEEEEECTTS-CEEEEEETTS------CEEEEEEE
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhh-cCCcEEEcCCEEEEEEEcCCc-eEEEEEECCC------CEEECCEE
Confidence 00 1344556666665 5 8999999999999876433 22 6777766 58999999
Q ss_pred EEeeCCCCCC
Q 008714 368 LIATGRAPFT 377 (556)
Q Consensus 368 i~a~G~~p~~ 377 (556)
|.|.|.....
T Consensus 159 V~AdG~~s~v 168 (399)
T 2x3n_A 159 VGADGIASYV 168 (399)
T ss_dssp EECCCTTCHH
T ss_pred EECCCCChHH
Confidence 9999987653
No 223
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.04 E-value=2.3e-05 Score=83.32 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC--CCC--------C---C-CCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD--QLM--------P---G-FDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~--~ll--------~---~-~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
..+|+|||+|+.|+..|..|++.|.+|+++++.. .+. + . ..+++...+.+.+.+ .||+++.++.+
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~v~~~~~v 290 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSD-YDVDVIDSQSA 290 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHT-SCEEEECSCCE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEcCCEE
Confidence 4579999999999999999999999999997531 111 0 1 124667777788876 89999999999
Q ss_pred EEEEecCC-CCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 335 TKITPAKD-GKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 335 ~~i~~~~~-g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..+..+.+ +....+++.+| .++.+|.||+|+|..|...
T Consensus 291 ~~i~~~~~~~~~~~V~~~~g------~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 291 SKLVPAATEGGLHQIETASG------AVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp EEEECCSSTTSCEEEEETTS------CEEEEEEEEECCCEEECCC
T ss_pred EEEEeccCCCceEEEEECCC------CEEEcCEEEECCCCCcCCC
Confidence 99975322 23466777665 5899999999999877543
No 224
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.04 E-value=2.9e-05 Score=76.86 Aligned_cols=98 Identities=22% Similarity=0.194 Sum_probs=73.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-----------CCCCC----CHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-----------LMPGF----DPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-----------ll~~~----d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.+|+|||+|+.|+..|..|++.|.+|+++++... ..|.+ ..++.+.+.+.+++ .|++++. ..+
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~v 94 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAAN-YAKIREG-VEV 94 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHT-TSEEEET-CCE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHH-cCCEEEE-eeE
Confidence 5799999999999999999999999999998421 01222 24566667777776 8999988 678
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..++..+ +.+.+.+ ++ .++.+|.+|+|+|..|...
T Consensus 95 ~~i~~~~--~~~~v~~-~~------~~~~~~~li~AtG~~~~~~ 129 (319)
T 3cty_A 95 RSIKKTQ--GGFDIET-ND------DTYHAKYVIITTGTTHKHL 129 (319)
T ss_dssp EEEEEET--TEEEEEE-SS------SEEEEEEEEECCCEEECCC
T ss_pred EEEEEeC--CEEEEEE-CC------CEEEeCEEEECCCCCcccC
Confidence 8887643 2344554 33 4799999999999887654
No 225
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.04 E-value=0.0001 Score=79.22 Aligned_cols=35 Identities=43% Similarity=0.752 Sum_probs=32.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
.+||+|||||.+|+++|..|++.|++|+|||+..+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~ 66 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 48999999999999999999999999999999443
No 226
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.9e-05 Score=83.16 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=68.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|+++|.+|+++|+ +.+.. .++
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~d- 225 (479)
T 2hqm_A 186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR---------------------------------------KFD- 225 (479)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc---------------------------------------ccC-
Confidence 5799999999999999999999999999998 33110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--C--CEEEEccc-eEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--P--QKVKFGTD-NIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~--~~v~~~~~-~~~~~d~lViAtG~~p~~ 245 (556)
+.+...+.+.+++.||+++.+... .+ + . ..|.+.+| .++.+|.||+|+|.+|+.
T Consensus 226 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 226 -----------ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred -----------HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 223334455667789999988533 22 1 1 35667777 789999999999998875
No 227
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.03 E-value=2.3e-05 Score=82.90 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=69.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|+++|.+|+++|+ +.+.. .++
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~d- 216 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR---------------------------------------KFD- 216 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT---------------------------------------TSC-
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc---------------------------------------ccc-
Confidence 5899999999999999999999999999998 33110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC---CEEEEccceE-EEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP---QKVKFGTDNI-VTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~---~~v~~~~~~~-~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +. ..|.+.++++ +.+|.||+|+|.+|+..
T Consensus 217 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 217 -----------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred -----------hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 223344556677889999988533 22 11 3566677777 99999999999998763
No 228
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=98.02 E-value=2.6e-06 Score=90.70 Aligned_cols=40 Identities=38% Similarity=0.560 Sum_probs=37.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~GG~~~ 140 (556)
.+||+|||||++||+||..|++.| .+|+|+|+ +.+||.+.
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~ 49 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ 49 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence 479999999999999999999999 99999999 89999875
No 229
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.02 E-value=4.4e-06 Score=84.53 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=38.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~ 141 (556)
..+||+|||||++||+||..|++.|++|+|+|+. .+||+|..
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 3579999999999999999999999999999985 89998874
No 230
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.01 E-value=2.7e-05 Score=81.81 Aligned_cols=95 Identities=23% Similarity=0.365 Sum_probs=68.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++|+ +.+... .++
T Consensus 179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~- 219 (474)
T 1zmd_A 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--------------------------------------GID- 219 (474)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--------------------------------------SCC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--------------------------------------ccC-
Confidence 5899999999999999999999999999998 332110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC---CEEEE-----ccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP---QKVKF-----GTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~---~~v~~-----~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +. ..+.+ +++.++.+|.||+|+|.+|+..
T Consensus 220 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 220 -----------MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 223344556677789999998643 22 22 23332 3457899999999999988754
No 231
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.01 E-value=1.2e-05 Score=79.98 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=73.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEe----CCCC------------CCCC-----CHHHHHHHHHHHhCCCceEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEA----LDQL------------MPGF-----DPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~----~~~l------------l~~~-----d~~~~~~~~~~l~~~~gV~~ 328 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .|.+ ..++.+.+.+.+.+ .|+++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~ 87 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSER-FGTTI 87 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHH-TTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHH-CCCEE
Confidence 5799999999999999999999999999997 2211 1222 23566667777766 79999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+.+. +..++..+ ..+.+++ ++ .++.+|.||+|+|..|...
T Consensus 88 ~~~~-v~~i~~~~--~~~~v~~-~~------~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 88 FTET-VTKVDFSS--KPFKLFT-DS------KAILADAVILAIGAVAKRL 127 (333)
T ss_dssp ECCC-CCEEECSS--SSEEEEC-SS------EEEEEEEEEECCCEEECCC
T ss_pred EEeE-EEEEEEcC--CEEEEEE-CC------cEEEcCEEEECCCCCcCCC
Confidence 9886 88887643 2355555 44 5899999999999987654
No 232
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.01 E-value=2.5e-05 Score=82.51 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=69.9
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+++|||||+.|+.+|..|+++ |.+|++||+ +.+. | .
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------~------------------------------~ 228 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------R------------------------------G 228 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------T------------------------------T
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc---------c------------------------------c
Confidence 5899999999999999999999 999999998 3211 0 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC---CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP---QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~---~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
++ ..+...+.+.+++.||+++.+... .+ +. ..|.+.+++++.+|.||+|+|..|+..
T Consensus 229 ~d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 229 FD------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp SC------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred cC------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence 11 223344556677789999988533 22 21 356677777899999999999988764
No 233
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.01 E-value=2e-06 Score=89.37 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCC--CC--------CCH-HHHHHHHHHHhCCCceEEEcCceEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLM--PG--------FDP-EIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll--~~--------~d~-~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.|+|+|||+|+.|+.+|..|++.+ .+||++++.+.+. |. +++ ++...+.+.+++ .||+++.+ .++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~-~gv~~i~~-~v~ 79 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPK-FNIEFINE-KAE 79 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGG-GTEEEECS-CEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHH-CCcEEEEe-EEE
Confidence 378999999999999999999876 7899999887532 11 111 111112333444 78999876 688
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+|+.+ ++ +|++.+| +++++|.+|+|+|.+++
T Consensus 80 ~Id~~--~~--~V~~~~g------~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 80 SIDPD--AN--TVTTQSG------KKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EEETT--TT--EEEETTC------CEEECSEEEECCCCEEE
T ss_pred EEECC--CC--EEEECCC------CEEECCEEEEeCCCCcc
Confidence 88764 22 4677776 68999999999998764
No 234
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.01 E-value=1.7e-05 Score=84.31 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..++++|.+|+|++++.+ +| .+|
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~---------L~------------------------------~~D-- 262 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV---------LR------------------------------GFD-- 262 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS---------ST------------------------------TSC--
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc---------cc------------------------------ccc--
Confidence 5799999999999999999999999999987421 11 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ec--CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LG--PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+...+++.||+++.+.... .. ...|.+.++.++.+|.|++|+|-+|+..
T Consensus 263 ----------~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 263 ----------QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred ----------hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 3344556667788999999886431 12 2245566777899999999999998865
No 235
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.00 E-value=1.2e-05 Score=84.15 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=76.3
Q ss_pred eEEEEcCchhHHHHHHHHHhCC-----CeEEEEEeCCCCC-------CC--C----------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG-----SEVTFIEALDQLM-------PG--F---------------------------- 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-----~~Vtli~~~~~ll-------~~--~---------------------------- 308 (556)
+|+|||+|+.|+.+|..|++.| .+|+++++.+.+- +. +
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 6999999999999999999999 8999999887421 00 0
Q ss_pred --------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCC-CCe--EEEEEecCCCCCCCceEecCEEEEee
Q 008714 309 --------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKD-GKP--VTIELIDAKTKEPKDTLEVDAALIAT 371 (556)
Q Consensus 309 --------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~-g~~--~~v~~~~g~~~~~~~~i~~D~vi~a~ 371 (556)
..++.+++....++ .++++++++++++++..++ ++. +.|++.++. ++..++.+|.||+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~--g~~~~~~~d~lVlAt 188 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASH-FQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD--GEELVRTTRALVVSP 188 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTT-CTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT--SCEEEEEESEEEECC
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHH-cCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC--CceEEEEeCEEEECC
Confidence 13344555555554 7899999999999987522 222 356666652 222379999999999
Q ss_pred CCCCCCC
Q 008714 372 GRAPFTN 378 (556)
Q Consensus 372 G~~p~~~ 378 (556)
|..|...
T Consensus 189 G~~p~~p 195 (463)
T 3s5w_A 189 GGTPRIP 195 (463)
T ss_dssp CCEECCC
T ss_pred CCCCCCc
Confidence 9988754
No 236
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.00 E-value=1.1e-05 Score=85.00 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=67.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|+++|.+|+|||+ +.+. | .++
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~------------------------------~~~- 225 (482)
T 1ojt_A 186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM---------Q------------------------------GAD- 225 (482)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc---------c------------------------------ccC-
Confidence 5899999999999999999999999999998 3311 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEcc----ceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGT----DNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~----~~~~~~d~lViAtG~~p~~ 245 (556)
.++...+.+.+++.||+++.+... .+ +. ..+.+.+ ++++.+|.||+|+|.+|+.
T Consensus 226 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 226 -----------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp -----------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred -----------HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 223344556677789999988543 22 22 2455554 6679999999999998875
No 237
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.00 E-value=2.5e-05 Score=82.50 Aligned_cols=94 Identities=20% Similarity=0.343 Sum_probs=69.8
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+++|||||+.|+.+|..|++. |.+|++||+ +.+. | .
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------~------------------------------~ 232 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL---------R------------------------------G 232 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC---------T------------------------------T
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc---------c------------------------------c
Confidence 5899999999999999999999 999999998 3211 0 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c---CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G---PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~---~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
++ .++...+.+.+++.||+++.+... .+ + ...|.+.+++++.+|.||+|+|.+|+..
T Consensus 233 ~d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 233 FD------------ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp SC------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred cC------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 11 223344556677789999988533 22 2 1356677778899999999999988753
No 238
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=97.99 E-value=2.4e-05 Score=80.27 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=73.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC---------------------------C----------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------------------------G---------------- 307 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~---------------------------~---------------- 307 (556)
+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. .
T Consensus 6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFIS 85 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998764310 0
Q ss_pred ---------------------CCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCC--CCeEEEEEecCCCCCCCceEec
Q 008714 308 ---------------------FDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKD--GKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 308 ---------------------~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~--g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
...++.+.+.+.+++ .||+++.++.++++..+++ +..+.|++.+ .++.+
T Consensus 86 ~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~-~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~-------g~i~a 157 (401)
T 2gqf_A 86 LVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDK-YGAKILLRSEVSQVERIQNDEKVRFVLQVNS-------TQWQC 157 (401)
T ss_dssp HHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHH-HTCEEECSCCEEEEEECCSCSSCCEEEEETT-------EEEEE
T ss_pred HHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEcccCcCCCeEEEEECC-------CEEEC
Confidence 123344556666665 7999999999999986411 2225565543 26999
Q ss_pred CEEEEeeCCCCC
Q 008714 365 DAALIATGRAPF 376 (556)
Q Consensus 365 D~vi~a~G~~p~ 376 (556)
|.||+|+|..+.
T Consensus 158 d~VVlAtG~~s~ 169 (401)
T 2gqf_A 158 KNLIVATGGLSM 169 (401)
T ss_dssp SEEEECCCCSSC
T ss_pred CEEEECCCCccC
Confidence 999999999874
No 239
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.99 E-value=3e-05 Score=81.29 Aligned_cols=94 Identities=27% Similarity=0.357 Sum_probs=67.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|+|+ +.+. | .++
T Consensus 172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~~- 211 (464)
T 2a8x_A 172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL---------P------------------------------NED- 211 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------T------------------------------TSC-
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc---------c------------------------------ccC-
Confidence 5899999999999999999999999999998 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEc-cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFG-TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~-~~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .. +. ..+.+. ++ .++.+|.||+|+|..|+..
T Consensus 212 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 274 (464)
T 2a8x_A 212 -----------ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVE 274 (464)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCS
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCC
Confidence 223344555667789999998543 22 22 234443 44 6799999999999988754
No 240
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.99 E-value=3.5e-06 Score=88.03 Aligned_cols=41 Identities=41% Similarity=0.589 Sum_probs=38.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
++||+|||||++||+||..|++.|++|+|+|+ +.+||.|..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence 47999999999999999999999999999999 889998753
No 241
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=97.99 E-value=2.5e-05 Score=77.96 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC---C--------CCCCC-----CHHHHHHHHHHHhCCCceEEEcCc
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD---Q--------LMPGF-----DPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~---~--------ll~~~-----d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
..+|+|||+|+.|+.+|..|++.|.+|+++++.. . .+|.+ .+++.+.+.+.+++ .|++++.+.
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~v~~~~~~ 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALR-FGADLRMED 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHH-TTCEEECCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHH-cCCEEEEee
Confidence 3589999999999999999999999999998531 0 11222 24566677777766 799999986
Q ss_pred eEEEEEecCCCCeEEE-EEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 333 FATKITPAKDGKPVTI-ELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v-~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+.+++. .+ ...+ .+.++ .++.+|.||+|+|..|...
T Consensus 93 -v~~i~~-~~--~~~v~~~~~g------~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 93 -VESVSL-HG--PLKSVVTADG------QTHRARAVILAMGAAARYL 129 (335)
T ss_dssp -EEEEEC-SS--SSEEEEETTS------CEEEEEEEEECCCEEECCC
T ss_pred -EEEEEe-CC--cEEEEEeCCC------CEEEeCEEEECCCCCccCC
Confidence 888875 22 2345 55554 5799999999999988654
No 242
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.98 E-value=4.4e-06 Score=84.77 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=37.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+||+|||||++|+++|..|++.|.+|+|+|+ +.+||.|..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 7999999999999999999999999999999 789999864
No 243
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=97.98 E-value=3.2e-05 Score=82.36 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=69.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||..|+.+|..|++.|.+|+++|+. .+. | .++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l---------~------------------------------~~~- 254 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK---------L------------------------------IKD- 254 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------T------------------------------CCS-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc---------c------------------------------ccc-
Confidence 57999999999999999999999999999983 211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----cC----CEEEEccce-EEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GP----QKVKFGTDN-IVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~~----~~v~~~~~~-~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+..+ .+ +. ..|.+.+|+ ++.+|.||+|+|..|...
T Consensus 255 -----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 255 -----------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred -----------HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 223344556677789999988543 22 22 245666776 899999999999998763
No 244
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.98 E-value=5.7e-06 Score=87.38 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+||+|||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW 51 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence 457999999999999999999999999999999 88999754
No 245
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=97.98 E-value=4.1e-05 Score=76.22 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=69.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC--------------------CCCCCHHHHHHHHHHHhC-------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL--------------------MPGFDPEIGKLAQRVLIN------- 322 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l--------------------l~~~d~~~~~~~~~~l~~------- 322 (556)
.+|+|||+|++|+.+|..|++.|.+|+++++.+.+ +...++++.+.+.+....
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWT 82 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEEC
T ss_pred ceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCCHHHHHHHHHHHhCCCeeecc
Confidence 47999999999999999999999999999987643 111223333333222110
Q ss_pred ----------------------------------CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE-ecCEE
Q 008714 323 ----------------------------------PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL-EVDAA 367 (556)
Q Consensus 323 ----------------------------------~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i-~~D~v 367 (556)
..|+++++++.|++++.++++ +.+++.+| ..+ .+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~i~~~~~v~~i~~~~~~--~~v~~~~g------~~~~~a~~v 154 (336)
T 1yvv_A 83 PLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEH--WNLLDAEG------QNHGPFSHV 154 (336)
T ss_dssp CCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHHTTCCEECSCCEEEEEECSSC--EEEEETTS------CEEEEESEE
T ss_pred ccceeccCcccccCCCCCccEEcCccHHHHHHHHHccCcEEecCEEEEEEEeCCE--EEEEeCCC------cCccccCEE
Confidence 027899999999999876443 66777665 344 58999
Q ss_pred EEeeCCCC
Q 008714 368 LIATGRAP 375 (556)
Q Consensus 368 i~a~G~~p 375 (556)
|.|+|...
T Consensus 155 V~a~g~~~ 162 (336)
T 1yvv_A 155 IIATPAPQ 162 (336)
T ss_dssp EECSCHHH
T ss_pred EEcCCHHH
Confidence 99999643
No 246
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.97 E-value=4.2e-06 Score=88.04 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=37.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
...+||+|||||++|++||..|++.|++|+|+|+ +.+||.+..
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t 57 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT 57 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence 3458999999999999999999999999999999 889998753
No 247
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.97 E-value=1.1e-05 Score=84.32 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCC------CCCC------HHHHHHHHHHH-hCCCceEEEcCce
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLM------PGFD------PEIGKLAQRVL-INPRKIDYHTGVF 333 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll------~~~d------~~~~~~~~~~l-~~~~gV~~~~~~~ 333 (556)
.++|+|||+|+.|+..|..|++. +.+|+++++.+.+. |.+- .++.....+.+ ++ .||++++++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~gi~v~~~~~ 81 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKK-RGIDLHLNAE 81 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHH-TTCEEETTCE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHh-cCcEEEecCE
Confidence 36899999999999999999998 78999999887531 1110 01111111223 34 7999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+..++.. . ..+.+.++ ..++.+|.||+|||.+|...
T Consensus 82 v~~i~~~--~--~~v~~~~g-----~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 82 VIEVDTG--Y--VRVRENGG-----EKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEEECSS--E--EEEECSSS-----EEEEECSEEEECCCEEECCC
T ss_pred EEEEecC--C--CEEEECCc-----eEEEEcCEEEECCCCCCCCC
Confidence 9988643 1 34544332 24789999999999988654
No 248
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.96 E-value=1.5e-05 Score=82.60 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCC--eEEEEEeCCCCCC---CCC----------HHHHHHHHHHHhCCCceEEEcCce
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGS--EVTFIEALDQLMP---GFD----------PEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~--~Vtli~~~~~ll~---~~d----------~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+. .++.....+.+++ .||+++.++.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~ 82 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA-QNIQLLGGTQ 82 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHH-TTEEEECSCC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHh-CCCEEEeCCE
Confidence 4689999999999999999999997 7999998764310 000 0110011244455 7999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++.++.. ++ .|++.++ .++.+|.+|+|+|.+|+..
T Consensus 83 v~~i~~~--~~--~v~~~~g------~~~~~d~lviAtG~~p~~~ 117 (431)
T 1q1r_A 83 VTAINRD--RQ--QVILSDG------RALDYDRLVLATGGRPRPL 117 (431)
T ss_dssp EEEEETT--TT--EEEETTS------CEEECSEEEECCCEEECCC
T ss_pred EEEEECC--CC--EEEECCC------CEEECCEEEEcCCCCccCC
Confidence 9999764 22 4666665 5799999999999998764
No 249
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.96 E-value=2.9e-05 Score=82.01 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=67.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|+++|.+|+|+|+ +.+... .++
T Consensus 195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~- 235 (490)
T 2bc0_A 195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--------------------------------------YYD- 235 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------------------------------TSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh--------------------------------------HHH-
Confidence 5799999999999999999999999999998 321100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +. ..+.+ ++.++.+|.||+|+|.+|..+
T Consensus 236 -----------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 236 -----------RDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp -----------HHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred -----------HHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence 233445556677789999988532 22 21 13555 567899999999999987754
No 250
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=97.95 E-value=3.6e-06 Score=88.20 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=37.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcC------CeEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG------LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g------~~V~viEk-~~~GG~~~~ 141 (556)
++||+|||||++||+||..|++.| ++|+|+|+ +.+||.+..
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s 52 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT 52 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence 489999999999999999999999 99999999 789987653
No 251
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=97.95 E-value=2.5e-05 Score=84.43 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=70.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+. | .++
T Consensus 188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~~- 227 (588)
T 3ics_A 188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM---------P------------------------------PID- 227 (588)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc---------c------------------------------cCC-
Confidence 5799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
..+...+.+.+++.||+++.+... .+ +...|.+.+++++.+|.||+|+|..|..
T Consensus 228 -----------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 228 -----------YEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECC
T ss_pred -----------HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCCh
Confidence 223344556677789999987533 22 2356888888899999999999988765
No 252
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.95 E-value=4.7e-06 Score=87.61 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=37.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC--eEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk-~~~GG~~~ 140 (556)
++||+|||||.+||+||.+|++.|. +|+|+|+ +.+||.+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCC
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceE
Confidence 3699999999999999999999999 9999999 88999875
No 253
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.94 E-value=2.3e-05 Score=82.51 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=66.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|+|||||+.|+.+|..|++.|.+|+++|+ +.+.. .++
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~ 226 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT---------------------------------------IYD 226 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS---------------------------------------SSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh---------------------------------------cCC
Confidence 36899999999999999999999999999998 32111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.++...+.+.+++.||+++.+... .+ +.. .+.++ +.++.+|.||+|+|..|..
T Consensus 227 ------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~~ 284 (480)
T 3cgb_A 227 ------------GDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPNT 284 (480)
T ss_dssp ------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEESC
T ss_pred ------------HHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcCh
Confidence 223344556677789999987532 22 221 24444 4589999999999998764
No 254
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=97.93 E-value=1.8e-05 Score=82.66 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=71.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCC--CC-C----CHH---HHHH---HHHHHhCCCceEEEcCceE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLM--PG-F----DPE---IGKL---AQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll--~~-~----d~~---~~~~---~~~~l~~~~gV~~~~~~~v 334 (556)
++|+|||+|+.|+..|..|++. |.+|+++++.+.+- +. + ... ..+. ..+.+.+ .+++++.++.+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~V 81 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRR-QKIQLLLNREV 81 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHH-TTEEEECSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHH-CCCEEEECCEE
Confidence 5899999999999999999998 89999999887542 11 1 011 1111 2344555 79999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.+++.. .+.+.+...+ +..++.+|.+|+|||.+|...
T Consensus 82 ~~id~~--~~~v~v~~~~-----~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 82 VAMDVE--NQLIAWTRKE-----EQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEEETT--TTEEEEEETT-----EEEEEECSEEEECCCCCBCCC
T ss_pred EEEECC--CCEEEEEecC-----ceEEEEcCEEEECCCcccCCC
Confidence 999864 3344443111 226799999999999988754
No 255
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=97.93 E-value=4.4e-05 Score=83.56 Aligned_cols=32 Identities=41% Similarity=0.483 Sum_probs=31.0
Q ss_pred CccEEEECCChHHHHHHHHHHH-----cCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE-----KGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~-----~g~~V~viEk 132 (556)
++||+||||||+|+++|..|++ .|++|+||||
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~ 44 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 44 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeC
Confidence 4899999999999999999999 9999999998
No 256
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=97.92 E-value=3.8e-05 Score=79.20 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=73.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC--------CCC----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL--------MPG---------------------------------- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l--------l~~---------------------------------- 307 (556)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.. .+.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 47999999999999999999999999999987411 000
Q ss_pred -----------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 308 -----------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 308 -----------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
++ ..+.+.+.+.+++ .|++++.++.+++++.++++..+.+...+| +..++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g----~~~~~~a~~vV~ 160 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAAR-QGVDVEYEVGVTDIKFFGTDSVTTIEDING----NKREIEARFIID 160 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHH-HTCEEECSEEEEEEEEETTEEEEEEEETTS----CEEEEEEEEEEE
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEeCCEEEEEEEcCCC----CEEEEEcCEEEE
Confidence 00 1334455555555 699999999999998764443445555554 123699999999
Q ss_pred eeCCCC
Q 008714 370 ATGRAP 375 (556)
Q Consensus 370 a~G~~p 375 (556)
|+|...
T Consensus 161 A~G~~s 166 (421)
T 3nix_A 161 ASGYGR 166 (421)
T ss_dssp CCGGGC
T ss_pred CCCCch
Confidence 999765
No 257
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.92 E-value=4.8e-05 Score=79.81 Aligned_cols=94 Identities=19% Similarity=0.307 Sum_probs=66.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+++|+ +.+. | .++
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~d- 214 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA---------P------------------------------TLD- 214 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------T------------------------------TSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc---------c------------------------------cCC-
Confidence 5899999999999999999999999999998 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCcEEEeceEE-Ee--cC--CEEEEc--cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSM-KALGVDILTGVGT-IL--GP--QKVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~~~-~~--~~--~~v~~~--~~--~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+ ++.||+++.+... .+ +. ..+.+. ++ .++.+|.||+|+|..|+..
T Consensus 215 -----------~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 215 -----------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred -----------HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 22334455566 7789999998543 22 22 234443 45 6799999999999988754
No 258
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=97.91 E-value=3.5e-05 Score=82.93 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=67.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+. | .++
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~~- 191 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM---------T------------------------------PVD- 191 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC---------T------------------------------TSC-
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc---------h------------------------------hcC-
Confidence 4899999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee-c--------------------CC--EEEEccceEEEeCeEE
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL-G--------------------PQ--KVKFGTDNIVTAKDII 236 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~-~--------------------~~--~v~~~~~~~~~~d~lV 236 (556)
..+...+.+.+++.||+++.+... .+ . .. .+.+.+++++.+|.||
T Consensus 192 -----------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi 260 (565)
T 3ntd_A 192 -----------REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLI 260 (565)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEE
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEE
Confidence 223344555677789999987532 11 1 12 3555677889999999
Q ss_pred EeCCCCCCC
Q 008714 237 IATGSVPFV 245 (556)
Q Consensus 237 iAtG~~p~~ 245 (556)
+|+|..|..
T Consensus 261 ~a~G~~p~~ 269 (565)
T 3ntd_A 261 MAIGVRPET 269 (565)
T ss_dssp ECSCEEECC
T ss_pred ECcCCccch
Confidence 999998764
No 259
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=97.91 E-value=6.7e-05 Score=80.22 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=74.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC--------CCC-------------CC----------------HHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL--------MPG-------------FD----------------PEI 312 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l--------l~~-------------~d----------------~~~ 312 (556)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .|. |. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 47999999999999999999999999999987643 111 12 234
Q ss_pred HHHHHHHHhCCC--ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC--CCCC
Q 008714 313 GKLAQRVLINPR--KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFT 377 (556)
Q Consensus 313 ~~~~~~~l~~~~--gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~ 377 (556)
.+++....++ . ++.+++++.|.+++.+++.....|++.+| .++.+|.||+|+|. .|..
T Consensus 97 ~~yl~~~~~~-~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G------~~~~ad~vV~AtG~~s~p~~ 158 (542)
T 1w4x_A 97 LRYINFVADK-FDLRSGITFHTTVTAAAFDEATNTWTVDTNHG------DRIRARYLIMASGQLSVPQL 158 (542)
T ss_dssp HHHHHHHHHH-TTGGGGEECSCCEEEEEEETTTTEEEEEETTC------CEEEEEEEEECCCSCCCCCC
T ss_pred HHHHHHHHHH-cCCCceEEcCcEEEEEEEcCCCCeEEEEECCC------CEEEeCEEEECcCCCCCCCC
Confidence 4445444443 3 36788999999998765545567777665 57999999999995 4544
No 260
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.90 E-value=9.4e-06 Score=85.84 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=37.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.+||+|||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW 79 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence 48999999999999999999999999999999 89999875
No 261
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.90 E-value=3e-05 Score=81.35 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=67.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++|+ +.+. | .++
T Consensus 178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~~- 217 (470)
T 1dxl_A 178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV---------P------------------------------TMD- 217 (470)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc---------c------------------------------ccc-
Confidence 5899999999999999999999999999998 3311 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Eec--C--CEEEEc---cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG--P--QKVKFG---TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~--~~v~~~---~~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+. . ..+.+. ++ .++.+|.||+|+|..|+..
T Consensus 218 -----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 282 (470)
T 1dxl_A 218 -----------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282 (470)
T ss_dssp -----------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence 223344556677789999998644 222 2 234432 33 6799999999999988653
No 262
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=97.90 E-value=9.6e-06 Score=82.01 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=34.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG 137 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG 137 (556)
..++||+|||||++|+++|++|++.|++|+|||+..+++
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~ 42 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED 42 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCC
Confidence 346899999999999999999999999999999955543
No 263
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=97.90 E-value=4.4e-05 Score=80.81 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=68.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+..|..+++.|.+|+++|+ +.+. | .++
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~d- 222 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL---------P------------------------------YED- 222 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS---------C------------------------------CSS-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c------------------------------ccC-
Confidence 5799999999999999999999999999998 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+..+ .+ +. ..+.+.+++++.+|.||+|+|..|+..
T Consensus 223 -----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 223 -----------ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 223444556677889999988533 22 22 245556677899999999999988753
No 264
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.90 E-value=4.7e-05 Score=80.36 Aligned_cols=94 Identities=27% Similarity=0.396 Sum_probs=67.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..|++.|.+|+++|+ +.+.. .++
T Consensus 199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~d- 238 (491)
T 3urh_A 199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG---------------------------------------GMD- 238 (491)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS---------------------------------------SSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc---------------------------------------cCC-
Confidence 5799999999999999999999999999998 33111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEcc---c--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGT---D--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~---~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +.. .+.+.+ + .++.+|.||+|+|..|...
T Consensus 239 -----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 303 (491)
T 3urh_A 239 -----------GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD 303 (491)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCT
T ss_pred -----------HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCC
Confidence 233444556677789999988643 11 222 344432 3 5799999999999988754
No 265
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.89 E-value=7.5e-06 Score=86.78 Aligned_cols=41 Identities=32% Similarity=0.457 Sum_probs=37.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+||+|||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 358999999999999999999999999999999 88999765
No 266
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.89 E-value=8.7e-06 Score=84.78 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
.++.+.+.+.+++ .|+++++++.|++|..+++++...|++.+| +++.+|.||.+++..
T Consensus 256 ~~L~~aL~r~~~~-~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G------~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAI-NGGTFMLNKNVVDFVFDDDNKVCGIKSSDG------EIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHH-C--CEESSCCEEEEEECTTSCEEEEEETTS------CEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHH-cCCEEEeCCeEEEEEEecCCeEEEEEECCC------cEEECCEEEECCCcc
Confidence 4677888888877 899999999999998744677777888776 579999999999988
No 267
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.89 E-value=6.7e-06 Score=84.42 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCCCC-C---------CHH-HHHHHHHHHhCCCceEEEcCceEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPG-F---------DPE-IGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll~~-~---------d~~-~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
+|+|+|||+|+.|+.+|..|++.+ .+|+++++++..... . +.+ +...+ +.+.+ .||+++.+ .++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~-~~~~~-~gv~~i~~-~v~ 78 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGY-DGLRA-HGIQVVHD-SAL 78 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECS-HHHHH-TTCEEECS-CEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCH-HHHHH-CCCEEEEe-EEE
Confidence 589999999999999999998876 689999987753211 1 111 11111 22334 68999876 688
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.|+.+ .+ .+.+.+| .++.+|.+++|+|.+|+..
T Consensus 79 ~id~~--~~--~v~~~~g------~~i~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 79 GIDPD--KK--LVKTAGG------AEFAYDRCVVAPGIDLLYD 111 (401)
T ss_dssp EEETT--TT--EEEETTS------CEEECSEEEECCCEEECGG
T ss_pred EEEcc--Cc--EEEeccc------ceeecceeeeccCCccccC
Confidence 88764 22 4666666 6899999999999987654
No 268
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=97.88 E-value=2.9e-05 Score=81.59 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=63.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCC------CCCC-----C--HHH-------HHHHHHHHhCCCce
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQL------MPGF-----D--PEI-------GKLAQRVLINPRKI 326 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~l------l~~~-----d--~~~-------~~~~~~~l~~~~gV 326 (556)
.++|+|||+|+.|+..|..|++. |.+|+++++.+.+ +|.+ . .++ .... +.+.+..++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gi 81 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDP-EFFRINKDV 81 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--------------------------------------------C
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCH-HHHhhhcCc
Confidence 36899999999999999999998 8999999998764 1110 0 111 1122 222323789
Q ss_pred EEEcCceEEEEEecCCCCeEEEEE-ecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 327 DYHTGVFATKITPAKDGKPVTIEL-IDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~-~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++++++.+.+++.. .+.+.+.. .++ ...++.+|.+|+|+|.+|...
T Consensus 82 ~~~~~~~V~~id~~--~~~v~~~~~~~g----~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 82 EALVETRAHAIDRA--AHTVEIENLRTG----ERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp EEECSEEEEEEETT--TTEEEEEETTTC----CEEEEECSEEEECCCEEECCC
T ss_pred EEEECCEEEEEECC--CCEEEEeecCCC----CEEEEECCEEEEeCCCCcCCC
Confidence 99999999999764 33333332 113 124789999999999988754
No 269
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.87 E-value=1.1e-05 Score=83.72 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc----CCccccccCCCCchhh
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV----VGGTCVNRGCVPSKAL 150 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~----~GG~~~~~g~ips~~l 150 (556)
+++||+|||||++|+++|..|++.|++|+|||+.. .+|.+....|...+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~ 75 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTV 75 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhh
Confidence 34799999999999999999999999999999833 2345555556554443
No 270
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.87 E-value=1.2e-05 Score=83.51 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
...+||+|||+|++|+++|..|++.|++|+|+|+ +.+||.|..
T Consensus 4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 3458999999999999999999999999999999 889998764
No 271
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.86 E-value=6.1e-05 Score=79.15 Aligned_cols=94 Identities=24% Similarity=0.312 Sum_probs=67.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||+|+.|+..|..|++.|.+|+++++ +.+. | .++
T Consensus 181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------~------------------------------~~~- 220 (476)
T 3lad_A 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL---------P------------------------------AVD- 220 (476)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------T------------------------------TSC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC---------c------------------------------ccC-
Confidence 5799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CCEEEEccc---eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQKVKFGTD---NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~~v~~~~~---~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ + ...+.+.++ .++.+|.||+|+|..|...
T Consensus 221 -----------~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 221 -----------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp -----------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred -----------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence 223444556677789999988543 11 2 223444432 6799999999999988754
No 272
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.85 E-value=0.0001 Score=75.47 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=71.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------CCHHHH-----------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FDPEIG----------------------------- 313 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------~d~~~~----------------------------- 313 (556)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+...
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 37999999999999999999999999999987644211 112111
Q ss_pred ------------------------------HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 314 ------------------------------KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 314 ------------------------------~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
..+.+.|.+..+..+++++++++++..+++ .+++++.|| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~-~v~v~~~dG------~~~~ 154 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENG-GIKIFFADG------SHEN 154 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTS-CEEEEETTS------CEEE
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCC-eEEEEECCC------CEEE
Confidence 112233333344567888999999876444 477889888 6899
Q ss_pred cCEEEEeeCCCC
Q 008714 364 VDAALIATGRAP 375 (556)
Q Consensus 364 ~D~vi~a~G~~p 375 (556)
+|+||-|-|...
T Consensus 155 adlvVgADG~~S 166 (412)
T 4hb9_A 155 VDVLVGADGSNS 166 (412)
T ss_dssp ESEEEECCCTTC
T ss_pred eeEEEECCCCCc
Confidence 999999999754
No 273
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=97.85 E-value=6.9e-05 Score=78.05 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=74.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--------------C-----------------------C----
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP--------------G-----------------------F---- 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~--------------~-----------------------~---- 308 (556)
..|+|||+|..|+-+|..|++.|.+|+++++.+.+.. . +
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 4799999999999999999999999999998763310 0 0
Q ss_pred --------------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 309 --------------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 309 --------------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
...+.+.+.+.+++ .||+++.++.++++..+ ++..+.|++.+| .++
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~-~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G------~~i 178 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD-LGVKIRTNTPVETIEYE-NGQTKAVILQTG------EVL 178 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHH-TTCEEECSCCEEEEEEE-TTEEEEEEETTC------CEE
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEec-CCcEEEEEECCC------CEE
Confidence 02233445555665 79999999999999864 444466777665 469
Q ss_pred ecCEEEEeeCCCC
Q 008714 363 EVDAALIATGRAP 375 (556)
Q Consensus 363 ~~D~vi~a~G~~p 375 (556)
.+|.||+|+|..+
T Consensus 179 ~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 179 ETNHVVIAVGGKS 191 (447)
T ss_dssp ECSCEEECCCCSS
T ss_pred ECCEEEECCCCCc
Confidence 9999999999876
No 274
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.85 E-value=5.9e-05 Score=78.70 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=67.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+++|+ +.+... .++
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~- 190 (452)
T 2cdu_A 150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK--------------------------------------YFD- 190 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT--------------------------------------TSC-
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh--------------------------------------hhh-
Confidence 5799999999999999999999999999998 321100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee-c-CCEE--EEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL-G-PQKV--KFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~-~-~~~v--~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ . ...+ ...++.++.+|.||+|+|..|+..
T Consensus 191 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 191 -----------KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred -----------hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence 223444556677889999988533 22 1 2222 223567899999999999988754
No 275
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=97.85 E-value=4.6e-05 Score=80.26 Aligned_cols=95 Identities=24% Similarity=0.364 Sum_probs=69.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||+|+.|+..|..+++.|.+|+++++ +.+. | .++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~~ 231 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL---------R------------------------------NFD 231 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------T------------------------------TSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc---------c------------------------------ccC
Confidence 35899999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ + ...|.+.+++++.+|.||+|+|..|...
T Consensus 232 ------------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~ 291 (484)
T 3o0h_A 232 ------------YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT 291 (484)
T ss_dssp ------------HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred ------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence 223344555667789999987532 22 1 2256677788899999999999987654
No 276
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.84 E-value=1.2e-05 Score=82.11 Aligned_cols=41 Identities=32% Similarity=0.573 Sum_probs=38.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
++||+|||||++|+++|..|++.|++|+|+|+ +.+||.|..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 37999999999999999999999999999999 889998863
No 277
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.84 E-value=1.1e-05 Score=84.65 Aligned_cols=41 Identities=29% Similarity=0.505 Sum_probs=37.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~~~ 141 (556)
++||+|||||++|+++|..|++.| ++|+|+|+ +.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 479999999999999999999999 99999999 889997764
No 278
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.84 E-value=1.3e-05 Score=84.34 Aligned_cols=42 Identities=36% Similarity=0.503 Sum_probs=38.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~GG~~~~ 141 (556)
..+||+|||||++|+++|..|++.| .+|+|+|+ +.+||.|..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 4589999999999999999999998 79999999 789998864
No 279
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.82 E-value=8.6e-05 Score=78.36 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+.. .++
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~d- 214 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN---------------------------------------LQD- 214 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT---------------------------------------CCC-
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------------------------------------cCC-
Confidence 5899999999999999999999999999998 33211 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEc--cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~--~~--~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++. |+++.+... .+ +. ..+.+. +| .++.+|.||+|+|..|...
T Consensus 215 -----------~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~ 277 (492)
T 3ic9_A 215 -----------EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD 277 (492)
T ss_dssp -----------HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred -----------HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence 12333444455555 898887543 11 22 234442 45 6799999999999998754
No 280
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=97.82 E-value=7.2e-05 Score=76.38 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=74.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC------CCC-------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL------MPG------------------------------------- 307 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l------l~~------------------------------------- 307 (556)
+|+|||+|+.|+.+|..|++.|.+|+++++.+.. -..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR 83 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCce
Confidence 6999999999999999999999999999987631 000
Q ss_pred ----------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEE-ecCCCCCCCceEecCEEEE
Q 008714 308 ----------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL-IDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 308 ----------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~~~~~~~~i~~D~vi~ 369 (556)
++ .++.+.+.+.+.+ .|++++.++++++++.++ +..+.+++ .+| +..++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~g~~i~~~~~v~~i~~~~-~~~~~v~~~~~g----~~~~~~a~~vV~ 157 (394)
T 1k0i_A 84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREA-CGATTVYQAAEVRLHDLQ-GERPYVTFERDG----ERLRLDCDYIAG 157 (394)
T ss_dssp EEECHHHHHTSCCEEECCHHHHHHHHHHHHHH-TTCEEESSCEEEEEECTT-SSSCEEEEEETT----EEEEEECSEEEE
T ss_pred EEeccccccCCCceEEechHHHHHHHHHHHHh-cCCeEEeceeEEEEEEec-CCceEEEEecCC----cEEEEEeCEEEE
Confidence 01 2234445555555 699999999999998642 22355666 555 112699999999
Q ss_pred eeCCCCCCC
Q 008714 370 ATGRAPFTN 378 (556)
Q Consensus 370 a~G~~p~~~ 378 (556)
|.|......
T Consensus 158 AdG~~S~vr 166 (394)
T 1k0i_A 158 CDGFHGISR 166 (394)
T ss_dssp CCCTTCSTG
T ss_pred CCCCCcHHH
Confidence 999977653
No 281
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.82 E-value=1.5e-05 Score=84.40 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+||+|||||++|+++|..|++.|.+|+|+|+ +.+||.+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 357999999999999999999999999999999 88999764
No 282
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=97.80 E-value=0.00011 Score=72.29 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=69.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC----C------------CCCCC-----HHHHHHHHHHHhCCCceEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ----L------------MPGFD-----PEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~----l------------l~~~d-----~~~~~~~~~~l~~~~gV~~~ 329 (556)
.|+|||+|+.|+..|..+++.|.+|+++++... + .|.+. +++.+.+.+.+++ .++++.
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~-~~~~~~ 84 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEK-YGTTII 84 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHH-TTCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhh-cCcEEE
Confidence 599999999999999999999999999987531 0 11221 4566666666666 788877
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
... +..+... .....+...++ .++.+|.||+|||.+|...
T Consensus 85 ~~~-v~~~~~~--~~~~~~~~~~~------~~~~~~~liiATG~~~~~~ 124 (314)
T 4a5l_A 85 TET-IDHVDFS--TQPFKLFTEEG------KEVLTKSVIIATGATAKRM 124 (314)
T ss_dssp CCC-EEEEECS--SSSEEEEETTC------CEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEeecC--CCceEEEECCC------eEEEEeEEEEccccccccc
Confidence 654 4444443 22244444444 6899999999999988654
No 283
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.78 E-value=6.7e-05 Score=79.22 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=67.3
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVE----KGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~----~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
.+|+|||||+.|+.+|..|++ .|.+|+++++. .+.+..
T Consensus 181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~------------------------------------- 223 (493)
T 1m6i_A 181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI------------------------------------- 223 (493)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-------------------------------------
Confidence 579999999999999999887 48899999873 211100
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
++ ..+...+.+.+++.||+++.+... .+ +.. .|.+.+|+++.+|.||+|+|..|+..
T Consensus 224 -l~------------~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~ 285 (493)
T 1m6i_A 224 -LP------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVE 285 (493)
T ss_dssp -SC------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred -CC------------HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHH
Confidence 00 123334455677789999998532 22 222 46677788999999999999988753
No 284
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=97.78 E-value=6.2e-05 Score=74.23 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=97.9
Q ss_pred eEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCCCC--------------------------------------CCH
Q 008714 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLMPG--------------------------------------FDP 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll~~--------------------------------------~d~ 310 (556)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+-.. ...
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~ 146 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAA 146 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCHH
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcchH
Confidence 799999999999999999998 9999999986543210 012
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecC--C-C--CeEEEEEec------CC--CCCCCceEec-------------
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAK--D-G--KPVTIELID------AK--TKEPKDTLEV------------- 364 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~--~-g--~~~~v~~~~------g~--~~~~~~~i~~------------- 364 (556)
++...+.+.+.+..||+++.++.++++..++ + + +...+.+.. +. ...+..++.+
T Consensus 147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~ 226 (326)
T 2gjc_A 147 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQ 226 (326)
T ss_dssp HHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSST
T ss_pred HHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccc
Confidence 3344455555543599999999999998753 2 3 554554421 10 0112256889
Q ss_pred --CEEEEeeCCCCCCCCCCCcccc-cccC---CCc--eeeC--CCCccccCCC-CcCCCEEEecccC----CCCC---cH
Q 008714 365 --DAALIATGRAPFTNGLGLENIN-VVTQ---RGF--VPVD--ERMRVIDANG-NLVPHLYCIGDAN----GKMM---LA 426 (556)
Q Consensus 365 --D~vi~a~G~~p~~~~l~l~~~~-~~~~---~G~--i~vd--~~l~~~~~~~-t~~~~Vya~GD~~----~~~~---~~ 426 (556)
|.||.|+|.......+-..... +... .|. ...+ +.+-+.+..+ +-+|++|++|-.. +.++ ..
T Consensus 227 ~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~f 306 (326)
T 2gjc_A 227 KHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTF 306 (326)
T ss_dssp TCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCSCC
T ss_pred cCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCChhh
Confidence 9999999987654321001000 0000 010 0000 0000001000 2689999999875 3332 23
Q ss_pred HHHHHHHHHHHHHHh
Q 008714 427 HAASAQGISVVEQVT 441 (556)
Q Consensus 427 ~~A~~qg~~aa~~i~ 441 (556)
-.-...|+.||+.|+
T Consensus 307 g~m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 307 GAMALSGVHAAEQIL 321 (326)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHH
Confidence 344567888888775
No 285
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.78 E-value=9.3e-05 Score=77.54 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=66.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++|+. .+. | ++
T Consensus 177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~-------------------------------~~- 215 (467)
T 1zk7_A 177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF---------R-------------------------------ED- 215 (467)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------T-------------------------------SC-
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC---------C-------------------------------CC-
Confidence 58999999999999999999999999999983 210 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +.. .|.++ +.++.+|.||+|+|..|...
T Consensus 216 -----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 216 -----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred -----------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 223344555677789999987532 21 222 34454 46899999999999988753
No 286
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=97.77 E-value=2.4e-05 Score=81.67 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=69.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CCC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MPG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ +|. ++.++.+...+.+++ .||++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~--- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLAD-AGVIYHPNFEVG--- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHH-TTCEEETTCCBT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHH-CCcEEEeCCEec---
Confidence 3578999999999999999999999999999998765 344 456677777777776 899999987541
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
. .+.+.+ ..+++|.|++|+|..
T Consensus 197 ----~---~v~~~~-------~~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 ----R---DASLPE-------LRRKHVAVLVATGVY 218 (456)
T ss_dssp ----T---TBCHHH-------HHSSCSEEEECCCCC
T ss_pred ----c---EEEhhH-------hHhhCCEEEEecCCC
Confidence 0 122222 236799999999986
No 287
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=97.76 E-value=0.00015 Score=77.83 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CC-----------------------CC------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LM-----------------------PG------------------ 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll-----------------------~~------------------ 307 (556)
-.|+|||||..|++.|..+++.|.+|+++++.+. +- ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 3799999999999999999999999999998631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 308 ------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 308 ------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+| ..+...+.+.+++..|++++ +..++.+..+ +++...|.+.+| .++.+|.||+|+|..
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG------~~I~Ad~VVLATGt~ 180 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMG------LKFRAKAVVLTVGTF 180 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTS------EEEEEEEEEECCSTT
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCC------CEEECCEEEEcCCCC
Confidence 01 13445566666653589994 5688888764 455556777665 689999999999987
Q ss_pred CCC
Q 008714 375 PFT 377 (556)
Q Consensus 375 p~~ 377 (556)
++.
T Consensus 181 s~~ 183 (651)
T 3ces_A 181 LDG 183 (651)
T ss_dssp TCC
T ss_pred ccC
Confidence 643
No 288
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=97.76 E-value=0.00011 Score=72.48 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=66.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC---C--------CCCC----CHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ---L--------MPGF----DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~---l--------l~~~----d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.|+|||+|+.|+..|..+++.|.+|+++++... + .|.+ .+++.........+ .++.+..+....
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKK-FGAVYQYGDIKS 86 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHH-TTCEEEECCCCE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhh-ccccccceeeee
Confidence 589999999999999999999999999987531 1 1222 24555555555555 566666665554
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..... .. .+...++ .++.+|.+|+|||.+|...
T Consensus 87 ~~~~~-~~---~~~~~~~------~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 87 VEDKG-EY---KVINFGN------KELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EEECS-SC---EEEECSS------CEEEEEEEEECCCEEECCC
T ss_pred eeeee-cc---eeeccCC------eEEEeceeEEcccCccCcC
Confidence 44332 11 2333333 6899999999999887654
No 289
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.75 E-value=0.00014 Score=76.32 Aligned_cols=94 Identities=23% Similarity=0.230 Sum_probs=67.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|+++|.+|+++++ +.+.. .++
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~d- 227 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR---------------------------------------SFD- 227 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------------------------------------TSC-
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc---------------------------------------ccC-
Confidence 5799999999999999999999999999998 33110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c-CC---EEEEcc-------ceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G-PQ---KVKFGT-------DNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~-~~---~v~~~~-------~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ + .. .+.+.+ +.++.+|.||+|+|..|...
T Consensus 228 -----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 228 -----------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 223344556677789999988643 21 1 11 344443 26799999999999988754
No 290
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.75 E-value=0.00011 Score=76.77 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=68.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||+|+.|+..|..+++.|.+|+++++ +.+. | .++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l---------~------------------------------~~~ 210 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL---------S------------------------------RFD 210 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------T------------------------------TSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c------------------------------ccC
Confidence 35899999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c-C--CEEE-EccceEEEeCeEEEeCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G-P--QKVK-FGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~-~--~~v~-~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ + . ..|. +.+++ +.+|.||+|+|..|...
T Consensus 211 ------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~ 271 (463)
T 4dna_A 211 ------------QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN 271 (463)
T ss_dssp ------------HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred ------------HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence 233445566677889999987533 22 2 2 2566 66776 99999999999987754
No 291
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=97.74 E-value=0.00013 Score=78.58 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=74.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC---------------------------------------CC-
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG---------------------------------------FD- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~---------------------------------------~d- 309 (556)
..|+|||+|..|+..|..+++.|.+|+++++.+.+... .+
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 47999999999999999999999999999987643210 01
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecC
Q 008714 310 ------------------------------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAK 341 (556)
Q Consensus 310 ------------------------------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~ 341 (556)
..+.+.+.+.+++ .||++++++.++++..++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~ 285 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVK-RNIDLRMNTRGIEVLKDD 285 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHH-TTCEEESSEEEEEEEECT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHh-cCCEEEeCCEeeEeEEcC
Confidence 1233344555555 799999999999998764
Q ss_pred CCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 342 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 342 ~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+++...|.+.+. +++..++.+|.||+|+|...
T Consensus 286 ~g~v~Gv~~~~~--~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 286 KGTVKGILVKGM--YKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp TSCEEEEEEEET--TTEEEEEECSEEEECCCCCT
T ss_pred CCeEEEEEEEeC--CCcEEEEECCeEEEeCCCcc
Confidence 466555666531 01123689999999999744
No 292
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=97.74 E-value=0.00016 Score=73.93 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------CCH----HHH------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FDP----EIG------------------------ 313 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------~d~----~~~------------------------ 313 (556)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... +.+ ++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999999999999999987643210 000 000
Q ss_pred ----------------------HHHHHHHhC-CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEe
Q 008714 314 ----------------------KLAQRVLIN-PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIA 370 (556)
Q Consensus 314 ----------------------~~~~~~l~~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a 370 (556)
..+.+.|.+ ..++++++++++++++.+++ .+.+++.+| .++.+|.||.|
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~--~v~v~~~~g------~~~~ad~vV~A 177 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK--KWTLTFENK------PSETADLVILA 177 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS--SEEEEETTS------CCEEESEEEEC
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC--EEEEEECCC------cEEecCEEEEC
Confidence 011111111 11357888999999987543 367888776 57899999999
Q ss_pred eCCCCCCC
Q 008714 371 TGRAPFTN 378 (556)
Q Consensus 371 ~G~~p~~~ 378 (556)
.|....+.
T Consensus 178 dG~~S~vR 185 (398)
T 2xdo_A 178 NGGMSKVR 185 (398)
T ss_dssp SCTTCSCC
T ss_pred CCcchhHH
Confidence 99977654
No 293
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.73 E-value=0.00013 Score=77.04 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=65.6
Q ss_pred cEEEECCChHHHHHHHHHHHc--------------CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhh
Q 008714 103 DLIIIGAGVGGHGAALHAVEK--------------GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK 167 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~--------------g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~ 167 (556)
.++|||||+.|+.+|..|++. +.+|+|||. +.+..
T Consensus 219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~------------------------------ 268 (502)
T 4g6h_A 219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN------------------------------ 268 (502)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST------------------------------
T ss_pred ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc------------------------------
Confidence 599999999999999988764 368999998 33211
Q ss_pred hcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEE----ccc----eEEEeCeEEEe
Q 008714 168 ALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKF----GTD----NIVTAKDIIIA 238 (556)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~----~~~----~~~~~d~lViA 238 (556)
.++ +++.....+.+++.||+++.+..+ .++...+.+ .++ +++.+|.||.|
T Consensus 269 ---------~~~------------~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa 327 (502)
T 4g6h_A 269 ---------MFE------------KKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWA 327 (502)
T ss_dssp ---------TSC------------HHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEEC
T ss_pred ---------CCC------------HHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEc
Confidence 111 345556667788899999998764 445554433 222 46999999999
Q ss_pred CCCCCC
Q 008714 239 TGSVPF 244 (556)
Q Consensus 239 tG~~p~ 244 (556)
+|..|.
T Consensus 328 ~Gv~~~ 333 (502)
T 4g6h_A 328 TGNKAR 333 (502)
T ss_dssp CCEECC
T ss_pred cCCcCC
Confidence 998765
No 294
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=97.73 E-value=0.00022 Score=76.31 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC-CCC-----------------------CC------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD-QLM-----------------------PG------------------ 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~-~ll-----------------------~~------------------ 307 (556)
-.|+|||||..|++.|..+++.|.+|.++++.+ .+- ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 469999999999999999999999999999863 110 00
Q ss_pred ------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 308 ------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 308 ------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
.| ..+.+.+.+.+++..||+++ +..++++..+ +++...|.+.+| .++.+|.||+|+|..
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG------~~i~AdaVVLATG~~ 179 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLG------VEYKTKAVVVTTGTF 179 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTS------CEEECSEEEECCTTC
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCC------cEEEeCEEEEccCCC
Confidence 00 12345556666653489994 5689888764 455556777666 589999999999987
Q ss_pred CCC
Q 008714 375 PFT 377 (556)
Q Consensus 375 p~~ 377 (556)
++.
T Consensus 180 s~~ 182 (637)
T 2zxi_A 180 LNG 182 (637)
T ss_dssp BTC
T ss_pred ccC
Confidence 654
No 295
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=97.73 E-value=0.00013 Score=72.90 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=67.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh---CCCeEEEEEeCCCCCC-------------------C----CCH---HHHHHHH---
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA---LGSEVTFIEALDQLMP-------------------G----FDP---EIGKLAQ--- 317 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~---~g~~Vtli~~~~~ll~-------------------~----~d~---~~~~~~~--- 317 (556)
.+|+|||+|.+|+-+|..|++ .|.+|+++++++.+-. . .+. .+.+.+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 369999999999999999999 8999999997643210 0 000 1111111
Q ss_pred -----------------------------------HHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 318 -----------------------------------RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 318 -----------------------------------~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
...++ .|+++++++.|++|+.++++ +.|++.+| .++
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~-~g~~i~~~~~V~~i~~~~~~--~~v~~~~g------~~~ 152 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKE-SGAEVYFRHRVTQINLRDDK--WEVSKQTG------SPE 152 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHH-HTCEEESSCCEEEEEECSSS--EEEEESSS------CCE
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHh-cCCEEEeCCEEEEEEEcCCE--EEEEECCC------CEE
Confidence 11221 37899999999999885433 66777665 457
Q ss_pred ecCEEEEeeCC
Q 008714 363 EVDAALIATGR 373 (556)
Q Consensus 363 ~~D~vi~a~G~ 373 (556)
.+|.||+|++.
T Consensus 153 ~ad~vV~A~p~ 163 (342)
T 3qj4_A 153 QFDLIVLTMPV 163 (342)
T ss_dssp EESEEEECSCH
T ss_pred EcCEEEECCCH
Confidence 99999999874
No 296
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=97.73 E-value=0.00023 Score=71.52 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=31.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
..|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999875
No 297
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.72 E-value=0.00016 Score=75.77 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=68.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------CCCHH-H------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------GFDPE-I------ 312 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~~d~~-~------ 312 (556)
.|+|||+|+.|+..|..|++.|.+|+++++.+.+-. .++.. +
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999997665411 11111 0
Q ss_pred ----H--HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce--EecCEEEEeeCCCCCCC
Q 008714 313 ----G--KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT--LEVDAALIATGRAPFTN 378 (556)
Q Consensus 313 ----~--~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~--i~~D~vi~a~G~~p~~~ 378 (556)
. ..+.+.+++ .+|+++.+ .+..++. ..+.+...+| .+ +.+|.+|+|+|.+|...
T Consensus 86 ~~~l~~~~~~~~~~~~-~~v~~~~g-~v~~id~----~~~~V~~~~g------~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQY-ETLTFYKG-YVKIKDP----THVIVKTDEG------KEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHTTC-TTEEEESE-EEEEEET----TEEEEEETTS------CEEEEEEEEEEECCCEEECCC
T ss_pred heeccccchHHHHHHh-CCCEEEEe-EEEEecC----CeEEEEcCCC------cEEEEecCEEEECCCCCccCC
Confidence 0 233344444 79999887 5666643 2355665554 45 99999999999988754
No 298
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.71 E-value=0.00014 Score=76.53 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=66.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..|++.|.+|++++++.+. | .++
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l---------~------------------------------~~d-- 226 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL---------R------------------------------GFD-- 226 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS---------T------------------------------TSC--
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC---------c------------------------------ccC--
Confidence 47999999999999999999999999999873210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee---cC--CEEEEccc-----eEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GP--QKVKFGTD-----NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~---~~--~~v~~~~~-----~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +. ..|.+.++ .++.+|.||+|+|..|...
T Consensus 227 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 227 ----------QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp ----------HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 233444556677789999998643 11 12 23444433 3799999999999987653
No 299
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=97.69 E-value=0.00016 Score=73.96 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=30.5
Q ss_pred CeEEEEcCchhHHHHHHHHHh-CC-CeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA-LG-SEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~-~g-~~Vtli~~~~ 302 (556)
.+|+|||+|.+|+-+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999999764
No 300
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=97.68 E-value=0.00025 Score=76.21 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=71.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CC-----------------------CC-----------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LM-----------------------PG----------------- 307 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll-----------------------~~----------------- 307 (556)
.-.|+|||||..|++.|..+++.|.+|+++++.+. +- +.
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 35899999999999999999999999999998631 10 00
Q ss_pred -------------CCH-HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 308 -------------FDP-EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 308 -------------~d~-~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.|. .+...+.+.+++..||+++.+ .++.+..+ ++....|.+.+| .++.+|.||+|+|.
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G------~~i~Ad~VVLATG~ 172 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSG------RAIQAKAAILACGT 172 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTS------CEEEEEEEEECCTT
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCC------cEEEeCEEEECcCC
Confidence 011 344556666665248998654 78887764 343334666665 58999999999998
Q ss_pred CCC
Q 008714 374 APF 376 (556)
Q Consensus 374 ~p~ 376 (556)
.++
T Consensus 173 ~s~ 175 (641)
T 3cp8_A 173 FLN 175 (641)
T ss_dssp CBT
T ss_pred CCC
Confidence 754
No 301
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.67 E-value=0.00023 Score=75.00 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=66.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..|+++|.+|+++++..+ +| .++
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---------l~------------------------------~~d-- 224 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP---------LR------------------------------GFD-- 224 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS---------ST------------------------------TSC--
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc---------cc------------------------------cCC--
Confidence 4799999999999999999999999999987321 00 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee---cCC--EEEEcc---ce--EEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GPQ--KVKFGT---DN--IVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~---~~~--~v~~~~---~~--~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +.. .+.+.+ ++ ++.+|.||+|+|..|...
T Consensus 225 ----------~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 225 ----------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence 233445556677889999988543 22 222 344432 33 478999999999988754
No 302
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.66 E-value=3e-05 Score=81.42 Aligned_cols=41 Identities=34% Similarity=0.573 Sum_probs=37.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC-eEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk-~~~GG~~~~ 141 (556)
.+||+|||||++|+++|..|++.|. +|+|+|+ +.+||.|..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 4799999999999999999999998 8999999 889998763
No 303
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=97.66 E-value=0.0002 Score=74.67 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=74.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-----C-------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-----G------------------------------------- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-----~------------------------------------- 307 (556)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 3699999999999999999999999999998753210 0
Q ss_pred ----------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe---cCCCCCCCceEecCEEEEeeCC
Q 008714 308 ----------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI---DAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 308 ----------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
++ .++.+.+.+.+.+ .|++++.++.++++..+ ++....|++. +| +..++.+|.||.|+|.
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G----~~~~~~ad~VV~AdG~ 160 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQD-RGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTN----EELTVYSKVVVEATGY 160 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHH-TTCEEESSEEEEEEEEE-TTEEEEEEEEETTTT----EEEEEECSEEEECCGG
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHH-cCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCC----ceEEEEcCEEEECcCC
Confidence 00 1344556666665 79999999999999875 3333335554 33 1237899999999998
Q ss_pred CCCC
Q 008714 374 APFT 377 (556)
Q Consensus 374 ~p~~ 377 (556)
....
T Consensus 161 ~s~v 164 (453)
T 3atr_A 161 SRSF 164 (453)
T ss_dssp GCTT
T ss_pred chhh
Confidence 7654
No 304
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.65 E-value=3.7e-05 Score=80.33 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=68.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCC--------CCC--CHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLM--------PGF--DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll--------~~~--d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.+++|+|||+|+.|+.+|..|.+.| .+|+++++.+.+. |.+ ..++...+.+.+++ .||+++.+..+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~ 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARS-DRCAFYGNVEVG 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTS-TTEEEEBSCCBT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHh-CCcEEEeeeEEe
Confidence 4679999999999999999999998 9999999987664 332 23556667777766 899999886541
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+ .|.+.+ .++.+|.||+|||..|
T Consensus 84 --------~--~V~~~~-------~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 --------R--DVTVQE-------LQDAYHAVVLSYGAED 106 (460)
T ss_dssp --------T--TBCHHH-------HHHHSSEEEECCCCCE
T ss_pred --------e--EEEecc-------ceEEcCEEEEecCcCC
Confidence 1 132222 2468999999999885
No 305
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=97.64 E-value=0.00031 Score=75.60 Aligned_cols=101 Identities=24% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------------------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------------------------------------- 305 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll------------------------------------------- 305 (556)
..+|+|||||+.|+-+|..|++.|.+|+++++.+..-
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 4689999999999999999999999999999873100
Q ss_pred -----------------C---CCC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe-cCCCCCCCceEe
Q 008714 306 -----------------P---GFD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI-DAKTKEPKDTLE 363 (556)
Q Consensus 306 -----------------~---~~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~~~~~~~i~ 363 (556)
+ .++ ..+...+.+.+++ .|++++.++.++++..+ ++..+.|++. +| ...++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G----~~~~i~ 176 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARS-RGITVHEETPVTDVDLS-DPDRVVLTVRRGG----ESVTVE 176 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHH-TTCEEETTCCEEEEECC-STTCEEEEEEETT----EEEEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEc-CCCEEEEEEecCC----ceEEEE
Confidence 0 011 2344556666666 79999999999999865 4556777776 33 124799
Q ss_pred cCEEEEeeCCCC
Q 008714 364 VDAALIATGRAP 375 (556)
Q Consensus 364 ~D~vi~a~G~~p 375 (556)
+|.||.|+|...
T Consensus 177 AdlVV~AdG~~S 188 (591)
T 3i3l_A 177 SDFVIDAGGSGG 188 (591)
T ss_dssp ESEEEECCGGGC
T ss_pred cCEEEECCCCcc
Confidence 999999999754
No 306
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.62 E-value=0.00032 Score=74.46 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=64.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..|+++|.+|++++++.+. | .++
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l---------~------------------------------~~d-- 249 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---------R------------------------------GFD-- 249 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS---------T------------------------------TSC--
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccc---------c------------------------------cCC--
Confidence 46999999999999999999999999999873210 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE----EecC---CE--EEE--ccc---eEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT----ILGP---QK--VKF--GTD---NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~----~~~~---~~--v~~--~~~---~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+++.||+++.+... ..+. .. +.+ .++ .++.+|.||+|+|..|+..
T Consensus 250 ----------~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~ 318 (519)
T 3qfa_A 250 ----------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR 318 (519)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence 223444556677889999988532 1111 22 222 233 3578999999999988654
No 307
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.62 E-value=0.00027 Score=71.65 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999763
No 308
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=97.62 E-value=0.00018 Score=77.28 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=73.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC---------------------------------------CC-
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG---------------------------------------FD- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~---------------------------------------~d- 309 (556)
-.|+|||+|..|+..|..+++.|.+|+++++.+.+... .+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 47999999999999999999999999999987643210 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecC
Q 008714 310 ------------------------------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAK 341 (556)
Q Consensus 310 ------------------------------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~ 341 (556)
..+.+.+.+.+++ .||++++++.++++..++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~ 280 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKE-QGIDTRLNSRVVKLVVND 280 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHH-TTCCEECSEEEEEEEECT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEECC
Confidence 1123344455555 799999999999998763
Q ss_pred CCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 342 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 342 ~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+++...|.+.+. +++..++.+|.||+|+|-...
T Consensus 281 ~g~v~Gv~~~~~--~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 281 DHSVVGAVVHGK--HTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp TSBEEEEEEEET--TTEEEEEEEEEEEECCCCCTT
T ss_pred CCcEEEEEEEeC--CCcEEEEEcCEEEEecCCccc
Confidence 366555666531 011236899999999997543
No 309
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.60 E-value=5.2e-05 Score=83.07 Aligned_cols=42 Identities=36% Similarity=0.539 Sum_probs=38.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
...+||+|||+|++|+++|..|++.|++|+|+|+ +.+||.+.
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~ 147 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 147 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 3458999999999999999999999999999999 88998764
No 310
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.60 E-value=0.00036 Score=75.16 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=76.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhC------CCeEEEEEeCCCCCCC------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL------GSEVTFIEALDQLMPG------------------------------------ 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~------g~~Vtli~~~~~ll~~------------------------------------ 307 (556)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+.+-..
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999987532100
Q ss_pred ---------C---C--------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCC--CCCC-
Q 008714 308 ---------F---D--------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK--TKEP- 358 (556)
Q Consensus 308 ---------~---d--------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~~~~- 358 (556)
+ . .++.+.+.+.+++ .||++++++.++++..++++....|.+.+.. .+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~ 194 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEA-LGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAP 194 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHH-TTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHH-cCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCc
Confidence 0 0 1344556666666 7999999999999987655655557665300 0011
Q ss_pred ------CceEecCEEEEeeCCCCC
Q 008714 359 ------KDTLEVDAALIATGRAPF 376 (556)
Q Consensus 359 ------~~~i~~D~vi~a~G~~p~ 376 (556)
..++.+|.||.|.|....
T Consensus 195 ~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 195 KTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEEECCCEEECSEEEECCCTTCH
T ss_pred ccccCCceEEECCEEEEeeCCCch
Confidence 157999999999998654
No 311
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=97.59 E-value=0.00029 Score=72.26 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CC----------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD---------------------------------- 309 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d---------------------------------- 309 (556)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-+. +.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g 102 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence 458999999999999999999999999999987643110 00
Q ss_pred ------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 310 ------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 310 ------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
.++.+.+.+.+. . +++++++.+++++.+++ .+.+++.+| +++.+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~-~~i~~~~~v~~i~~~~~--~v~v~~~~g------~~~~a~ 171 (407)
T 3rp8_A 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWG--R-DSVQFGKRVTRCEEDAD--GVTVWFTDG------SSASGD 171 (407)
T ss_dssp CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHC--G-GGEEESCCEEEEEEETT--EEEEEETTS------CEEEES
T ss_pred CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCC--c-CEEEECCEEEEEEecCC--cEEEEEcCC------CEEeeC
Confidence 112233333332 2 78889999999987543 477888776 589999
Q ss_pred EEEEeeCCCCCC
Q 008714 366 AALIATGRAPFT 377 (556)
Q Consensus 366 ~vi~a~G~~p~~ 377 (556)
.||.|.|.....
T Consensus 172 ~vV~AdG~~S~v 183 (407)
T 3rp8_A 172 LLIAADGSHSAL 183 (407)
T ss_dssp EEEECCCTTCSS
T ss_pred EEEECCCcChHH
Confidence 999999986654
No 312
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=97.56 E-value=0.00046 Score=70.07 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 369999999999999999999999999998764
No 313
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.56 E-value=4.5e-05 Score=78.15 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+||||||+|+++|..|++.|++|+||||
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er 32 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYER 32 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEec
Confidence 3799999999999999999999999999998
No 314
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=97.56 E-value=0.00041 Score=74.57 Aligned_cols=104 Identities=19% Similarity=0.182 Sum_probs=73.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC---------------------------------------CC-
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG---------------------------------------FD- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~---------------------------------------~d- 309 (556)
.+|+|||+|..|+..|..+++.|.+|+++++.+.+... .+
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP 206 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999987643210 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecC
Q 008714 310 ------------------------------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAK 341 (556)
Q Consensus 310 ------------------------------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~ 341 (556)
..+...+.+.+++ .||++++++.++++..++
T Consensus 207 ~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~-~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 207 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVK-RGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHH-TTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHH-cCCeEEecCEEEEEEECC
Confidence 1223344455555 799999999999997653
Q ss_pred CCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 342 DGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 342 ~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+++...|.+.+. +++..++.+|.||+|+|..++
T Consensus 286 ~g~v~GV~~~~~--~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 286 SGKVTGVLVKGE--YTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp -CCEEEEEEEET--TTEEEEEECSEEEECCCCCTT
T ss_pred CCeEEEEEEEeC--CCcEEEEEcCEEEEeCCCCcc
Confidence 266555666531 111236899999999997654
No 315
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.55 E-value=0.00029 Score=75.08 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=75.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------------------------- 306 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------- 306 (556)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 4799999999999999999999999999998753200
Q ss_pred ------------C------------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCC--eEEEEEecC
Q 008714 307 ------------G------------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGK--PVTIELIDA 353 (556)
Q Consensus 307 ------------~------------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~--~~~v~~~~g 353 (556)
. ++ ..+...+.+.+++ .|+++++++++++++.++++. .+.+++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~ 164 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARK-HGGAIRFGTRLLSFRQHDDDAGAGVTARLAGP 164 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEECGGGCSEEEEEEEET
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCCccccEEEEEEcC
Confidence 0 01 2334556666666 699999999999998764411 467777765
Q ss_pred CCCCCCceEecCEEEEeeCCCC
Q 008714 354 KTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 354 ~~~~~~~~i~~D~vi~a~G~~p 375 (556)
.+ ..++.+|.||.|.|...
T Consensus 165 ~~---~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 165 DG---EYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TE---EEEEEEEEEEECCCTTC
T ss_pred CC---eEEEEeCEEEECCCCcc
Confidence 21 35799999999999743
No 316
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=97.55 E-value=0.00037 Score=70.29 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 69999999999999999999999999999764
No 317
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=97.55 E-value=0.00024 Score=72.05 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=30.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999998753
No 318
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.52 E-value=0.00047 Score=74.55 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|+|||||+.|+.+|..|+++|.+|+++++.
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 37999999999999999999999999999873
No 319
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.52 E-value=8.2e-05 Score=83.12 Aligned_cols=42 Identities=36% Similarity=0.539 Sum_probs=37.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
...+||+|||||++||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 318 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence 3467999999999999999999999999999999 78998653
No 320
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.51 E-value=6.5e-05 Score=76.47 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcC
Q 008714 103 DLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVV 135 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~ 135 (556)
||+|||||++|+++|..|++. |++|+|||+ ..+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 899999999999999999999 999999999 444
No 321
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=97.50 E-value=0.00069 Score=71.47 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=75.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------------------------- 306 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------- 306 (556)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
T 2qa2_A 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDFG 92 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecccc
Confidence 5799999999999999999999999999997653210
Q ss_pred ----CC-------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 307 ----GF-------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 307 ----~~-------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
.+ ...+.+.+.+.+.+ .|+++++++++++++.++++ +++++.++. + ..++.+|.||.|.|...
T Consensus 93 ~~~~~~~~~~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~--g-~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 93 VLEGAHYGVKAVPQSTTESVLEEWALG-RGAELLRGHTVRALTDEGDH--VVVEVEGPD--G-PRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp GSTTCCCEEEEEEHHHHHHHHHHHHHH-TTCEEEESCEEEEEEECSSC--EEEEEECSS--C-EEEEEEEEEEECCCTTC
T ss_pred cCCCCCCceEecCHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEeCCE--EEEEEEcCC--C-cEEEEeCEEEEccCccc
Confidence 00 02344555565665 68999999999999876443 677777762 1 24799999999999754
No 322
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=97.46 E-value=0.00058 Score=69.19 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=69.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC------C------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------F------------------------------------ 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~------~------------------------------------ 308 (556)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.. +
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 4899999999999999999999999999986543110 0
Q ss_pred --------------C-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 309 --------------D-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 309 --------------d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
+ ..+...+.+...+ .|++++.++.++.+..+ ++....+..... ++..++.+|+||-|.|.
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~-~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~---~~~~~~~a~~vIgAdG~ 160 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAK-AGADVWVKSPALGVIKE-NGKVAGAKIRHN---NEIVDVRAKMVIAADGF 160 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHH-HTCEEESSCCEEEEEEE-TTEEEEEEEEET---TEEEEEEEEEEEECCCT
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHh-cCcEEeeeeeeeeeeec-cceeeeeeeccc---ccceEEEEeEEEeCCcc
Confidence 0 1233444455554 78999999999988765 343333333221 12357899999999995
Q ss_pred C
Q 008714 374 A 374 (556)
Q Consensus 374 ~ 374 (556)
.
T Consensus 161 ~ 161 (397)
T 3oz2_A 161 E 161 (397)
T ss_dssp T
T ss_pred c
Confidence 4
No 323
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.46 E-value=8.1e-05 Score=74.74 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC------CeEEEecCCcC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG------LKTAIIEGDVV 135 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g------~~V~viEk~~~ 135 (556)
||+|||||.+|+++|+.|++.| .+|+|||+..+
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 8999999999999999999998 99999999543
No 324
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=97.45 E-value=0.00079 Score=71.31 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=73.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC--------CC----------C------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL--------MP----------G------------------------ 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l--------l~----------~------------------------ 307 (556)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.. .| +
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 47999999999999999999999999999987510 00 0
Q ss_pred --------------------CC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 308 --------------------FD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 308 --------------------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
++ ..+.+.+.+.+++ .||+++.+++++++..+ ++....+.+.+.+ ++..++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~-~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~d--G~~~~i~ad~ 163 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSER-KGVDVRERHEVIDVLFE-GERAVGVRYRNTE--GVELMAHARF 163 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEE-TTEEEEEEEECSS--SCEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEE-CCEEEEEEEEeCC--CCEEEEEcCE
Confidence 00 1233455556665 79999999999999875 4443335554321 1224799999
Q ss_pred EEEeeCCCCC
Q 008714 367 ALIATGRAPF 376 (556)
Q Consensus 367 vi~a~G~~p~ 376 (556)
||.|+|....
T Consensus 164 VI~AdG~~S~ 173 (512)
T 3e1t_A 164 IVDASGNRTR 173 (512)
T ss_dssp EEECCCTTCS
T ss_pred EEECCCcchH
Confidence 9999998653
No 325
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=97.44 E-value=0.00069 Score=71.47 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=74.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC----------------------C--------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------------------G-------------------- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~----------------------~-------------------- 307 (556)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG 91 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence 4799999999999999999999999999997653210 0
Q ss_pred -CC-----------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 308 -FD-----------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 308 -~d-----------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
++ ..+.+.+.+.+.+ .|+++++++++++++.+++ .+++++.++. + ..++.+|.||.|.|...
T Consensus 92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~--~v~v~~~~~~--g-~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 92 VLEGAWQAAKTVPQSVTETHLEQWATG-LGADIRRGHEVLSLTDDGA--GVTVEVRGPE--G-KHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp GSTTGGGCEEEEEHHHHHHHHHHHHHH-TTCEEEETCEEEEEEEETT--EEEEEEEETT--E-EEEEEESEEEECCCTTC
T ss_pred cCCCCCCceeecCHHHHHHHHHHHHHH-CCCEEECCcEEEEEEEcCC--eEEEEEEcCC--C-CEEEEeCEEEECCCcch
Confidence 00 1234455555665 6899999999999987644 3667777752 1 24789999999999754
No 326
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=97.43 E-value=0.00067 Score=69.00 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=72.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--------------------C-----------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP--------------------G----------------------- 307 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~--------------------~----------------------- 307 (556)
.|+|||||+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 6 dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3cgv_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCCEEEE
Confidence 699999999999999999999999999998763210 0
Q ss_pred CC--------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 308 FD--------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 308 ~d--------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
++ ..+.+.+.+.+++ .|++++.++.+++++.+ ++....|++.+. ++..++.+|.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~---~~~~~~~a~~vV~A~G~ 160 (397)
T 3cgv_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAK-AGADVWVKSPALGVIKE-NGKVAGAKIRHN---NEIVDVRAKMVIAADGF 160 (397)
T ss_dssp EC-----CCCEEEECHHHHHHHHHHHHHH-HTCEEESSCCEEEEEEE-TTEEEEEEEEET---TEEEEEEEEEEEECCCT
T ss_pred EeccccCCceeEEEeHHHHHHHHHHHHHh-CCCEEEECCEEEEEEEe-CCEEEEEEEEEC---CeEEEEEcCEEEECCCc
Confidence 00 1233455555655 79999999999999875 343333666432 12268999999999997
Q ss_pred CC
Q 008714 374 AP 375 (556)
Q Consensus 374 ~p 375 (556)
..
T Consensus 161 ~s 162 (397)
T 3cgv_A 161 ES 162 (397)
T ss_dssp TC
T ss_pred ch
Confidence 65
No 327
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.41 E-value=9.1e-05 Score=77.28 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHh-C------CCeEEEEEeCCCCC--------CC--CCHHHHHHHHHHHhCCCceEEEcC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTA-L------GSEVTFIEALDQLM--------PG--FDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~-~------g~~Vtli~~~~~ll--------~~--~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
+++|+|||+|+.|+.+|..|.+ . |.+|+++++.+.+. |. ...++...+.+.+++ .+|+++.+
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~-~~v~~~~~ 81 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAED-PRFRFFGN 81 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTS-TTEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhc-CCCEEEee
Confidence 4689999999999999999999 7 99999999987653 22 224566667777766 89999888
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
..+ . + .|++.++ ++.+|.||+|+|..
T Consensus 82 v~v-----~---~--~v~~~~~-------~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 82 VVV-----G---E--HVQPGEL-------SERYDAVIYAVGAQ 107 (456)
T ss_dssp CCB-----T---T--TBCHHHH-------HHHSSEEEECCCCC
T ss_pred EEE-----C---C--EEEECCC-------eEeCCEEEEeeCCC
Confidence 542 1 1 1333332 57899999999996
No 328
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=97.41 E-value=0.0009 Score=73.45 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=31.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
..|+|||||..|+-.|..|++.|.+|+++++.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999999854
No 329
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00019 Score=75.67 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=69.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC----------CCC---HHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------GFD---PEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~----------~~d---~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
.+|+|||+|+.|+..|..|++. .+|+++++.+.+-. .++ .++...+.+.+ + .+++++.+..+.+
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~-~~v~~~~~~~v~~ 185 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-N-ENTKIYLETSALG 185 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-C-TTEEEETTEEECC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-h-cCCEEEcCCEEEE
Confidence 4799999999999999999999 99999998775411 112 22223333333 3 6999999998888
Q ss_pred EEecCCCCeEEEEE-ecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 337 ITPAKDGKPVTIEL-IDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 337 i~~~~~g~~~~v~~-~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+..+. +.+.+.. .++ +..++.+|.+|+|+|..|...
T Consensus 186 i~~~~--~~~~~~~~~~~----~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 186 VFDKG--EYFLVPVVRGD----KLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp CEECS--SSEEEEEEETT----EEEEEEESCEEECCCEEECCC
T ss_pred EEcCC--cEEEEEEecCC----eEEEEECCEEEECCCCCccCC
Confidence 87642 2233332 222 113689999999999988654
No 330
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.39 E-value=0.0015 Score=69.64 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 316 ~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
+.+.+++ .|++++.+ +++++..++++..+.|++.+| .++.+|.||.|+|.....
T Consensus 171 L~~~a~~-~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g------~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 171 LKRWAVE-RGVNRVVD-EVVDVRLNNRGYISNLLTKEG------RTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHH-TTCEEEEC-CEEEEEECTTSCEEEEEETTS------CEECCSEEEECCGGGCCC
T ss_pred HHHHHHH-CCCEEEEe-eEeEEEEcCCCcEEEEEECCC------cEEEeCEEEECCCCchhh
Confidence 3344444 68999999 899998765555567777665 579999999999987654
No 331
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=97.38 E-value=0.00063 Score=69.80 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=72.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCe-EEEEEeCCCCCCC-----CC----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLMPG-----FD---------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~~ll~~-----~d---------------------------------- 309 (556)
.+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+. +.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~ 84 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 84 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence 4799999999999999999999999 9999987653210 00
Q ss_pred ----------------------HHHHHHHHHHHhCCCc-eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 310 ----------------------PEIGKLAQRVLINPRK-IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 310 ----------------------~~~~~~~~~~l~~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
.++.+.+.+.+.+..| +++++++++++++. +++ +.+++.+.. +++..++.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~-~g~~~~~~ad~ 160 (410)
T 3c96_A 85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDG-HGKPQALGADV 160 (410)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEET-TSCEEEEEESE
T ss_pred EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCC-CCCceEEecCE
Confidence 1233344444433124 68999999999987 344 567776510 01124789999
Q ss_pred EEEeeCCCCCC
Q 008714 367 ALIATGRAPFT 377 (556)
Q Consensus 367 vi~a~G~~p~~ 377 (556)
||.|.|....+
T Consensus 161 vV~AdG~~S~v 171 (410)
T 3c96_A 161 LVGADGIHSAV 171 (410)
T ss_dssp EEECCCTTCHH
T ss_pred EEECCCccchh
Confidence 99999986543
No 332
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.35 E-value=0.00065 Score=74.72 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=65.6
Q ss_pred ccEEEEC--CChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIG--AGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIG--gG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|+||| +|..|+.+|..|++.|.+|+++++ +.+.....
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~-------------------------------------- 565 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN-------------------------------------- 565 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG--------------------------------------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc--------------------------------------
Confidence 4699999 999999999999999999999998 33211000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEE-----ccceEEEeCeEEEeCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKF-----GTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~-----~~~~~~~~d~lViAtG~~p~~ 245 (556)
. ..+...+.+.+++.||+++.+... .+....+.+ ++++++.+|.||+|+|..|..
T Consensus 566 -~-----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 566 -N-----------TFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp -G-----------GTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred -c-----------chhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence 0 001123344566789999998654 333333333 245689999999999998764
No 333
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.33 E-value=0.0016 Score=71.60 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
...|+|||||..|+-.|..|++.|.+|+++++.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999999999999999999999999999864
No 334
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=97.31 E-value=0.0013 Score=69.67 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC-EEEEeeCCCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD-AALIATGRAP 375 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D-~vi~a~G~~p 375 (556)
+.+.+.+.+++ .||++++++.++++..+++++.+.|.+.++ ++..++.+| .||+|+|--.
T Consensus 204 l~~~L~~~~~~-~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~---g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 204 LMKPLVETAEK-LGVRAEYDMRVQTLVTDDTGRVVGIVAKQY---GKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHH-TTCEEECSEEEEEEEECTTCCEEEEEEEET---TEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHH-cCCEEEecCEeEEEEECCCCcEEEEEEEEC---CcEEEEEeCCeEEEeCCChh
Confidence 33444455555 799999999999998865577666766543 122468996 9999999654
No 335
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.31 E-value=0.00014 Score=83.45 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
+++|+|||+|+.|+..|..|++.|. +|+++++.+.+. |. +..+..+...+.+++ .||+++.+..+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~-- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD-LGVKIICGKSLSE-- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHT-TTCEEEESCCBST--
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHH-CCcEEEcccEecc--
Confidence 4789999999999999999999998 799999876542 22 345666666677776 8999998875421
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
+ .+++.++ .++.+|.||+|||. +|..
T Consensus 264 -----~--~v~~~~~------~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 -----N--EITLNTL------KEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp -----T--SBCHHHH------HHTTCCEEEECCCCCEECC
T ss_pred -----c--eEEhhhc------CccCCCEEEEecCCCCCCC
Confidence 1 1333333 35789999999998 5764
No 336
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=97.31 E-value=0.00045 Score=74.14 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=72.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------------------------------------C-----C
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------------------------------------P-----G 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------------------------------------~-----~ 307 (556)
-.|+|||+|++|+-+|..|++.|.+|+++++.+... . .
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 469999999999999999999999999999754211 0 0
Q ss_pred ---------------C-CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe--cCCCCCCCceEecCEEEE
Q 008714 308 ---------------F-DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 308 ---------------~-d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~ 369 (556)
+ ...+.+.+.+.+++ .|++++.++.+++++.++++ +.+++. +| ..++.+|.||.
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~gv~i~~~~~v~~l~~~~~~--v~v~~~~~~G-----~~~~~a~~vV~ 201 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHARE-AGAEIPRGHEVTRLRQDAEA--VEVTVAGPSG-----PYPVRARYGVG 201 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHH-HTEECCBSCEEEECCBCSSC--EEEEEEETTE-----EEEEEESEEEE
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCe--EEEEEEeCCC-----cEEEEeCEEEE
Confidence 0 12344566666665 69999999999999875444 566663 33 14799999999
Q ss_pred eeCCCC
Q 008714 370 ATGRAP 375 (556)
Q Consensus 370 a~G~~p 375 (556)
|.|...
T Consensus 202 ADG~~S 207 (570)
T 3fmw_A 202 CDGGRS 207 (570)
T ss_dssp CSCSSC
T ss_pred cCCCCc
Confidence 999754
No 337
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.28 E-value=0.00036 Score=76.55 Aligned_cols=86 Identities=28% Similarity=0.389 Sum_probs=63.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---------CCCC--HHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---------PGFD--PEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---------~~~d--~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. |... .++.+.+.+.+++ .||+++.++.+..
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV-TGVTLKLNHTVTA- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH-HTCEEEESCCCCS-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHH-cCCEEEeCcEecH-
Confidence 3689999999999999999999999999999887542 2211 1333445556665 7898888753210
Q ss_pred EecCCCCeEEEEEecCCCCCCCceE-ecCEEEEeeCCCCCCC
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTL-EVDAALIATGRAPFTN 378 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i-~~D~vi~a~G~~p~~~ 378 (556)
..+ .+|.||+|||.+|+..
T Consensus 451 ----------------------~~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 451 ----------------------DQLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ----------------------SSSCCSSEEEECCCEEECCC
T ss_pred ----------------------HHhhcCCEEEEccCCCcCCC
Confidence 123 7999999999988764
No 338
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=97.27 E-value=0.0017 Score=66.09 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=30.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 69999999999999999999999999999764
No 339
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=97.26 E-value=0.0022 Score=63.62 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=98.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCCCC---------------------------C-----------C
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLMPG---------------------------F-----------D 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll~~---------------------------~-----------d 309 (556)
-.|+|||+|+.|+.+|..|++. |.+|+++++.+.+-.. + .
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~ 159 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA 159 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence 4699999999999999999997 9999999987643200 0 1
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCC----------------C--CeEEEEEe------cCCC--CCCCceEe
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKD----------------G--KPVTIELI------DAKT--KEPKDTLE 363 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~----------------g--~~~~v~~~------~g~~--~~~~~~i~ 363 (556)
.++.+.+.+.+.+..|++++.++.+.++..+++ + +...+... ++.. ..+..++.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 233345555555435999999999988876532 2 33334332 1100 01235799
Q ss_pred cCEEEEeeCCCCCCCCCC---Cccccccc-CCCc--e--------eeCCCCccccCCCCcCCCEEEecccC----CCC--
Q 008714 364 VDAALIATGRAPFTNGLG---LENINVVT-QRGF--V--------PVDERMRVIDANGNLVPHLYCIGDAN----GKM-- 423 (556)
Q Consensus 364 ~D~vi~a~G~~p~~~~l~---l~~~~~~~-~~G~--i--------~vd~~l~~~~~~~t~~~~Vya~GD~~----~~~-- 423 (556)
++.||.|+|.....-.+- +...++.. -.|. . .|+..- .-+|++|++|=.+ +.|
T Consensus 240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~-------~v~~gl~~~gm~~~~~~g~~rm 312 (344)
T 3jsk_A 240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTR-------EIVPGLIVGGMELSEIDGANRM 312 (344)
T ss_dssp CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCE-------EEETTEEECGGGHHHHHTCEEC
T ss_pred cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCc-------eEcCCEEEechhhHhhcCCCCC
Confidence 999999999876532100 01111110 0111 1 122222 3479999999764 322
Q ss_pred -CcHHHHHHHHHHHHHHHh
Q 008714 424 -MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 424 -~~~~~A~~qg~~aa~~i~ 441 (556)
+....-...|+.||+.|+
T Consensus 313 gp~fg~m~~sg~~~a~~~~ 331 (344)
T 3jsk_A 313 GPTFGAMALSGVKAAHEAI 331 (344)
T ss_dssp CSCCHHHHHHHHHHHHHHH
T ss_pred CcccceeeecCHHHHHHHH
Confidence 233344567888887775
No 340
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.16 E-value=0.00024 Score=75.93 Aligned_cols=34 Identities=44% Similarity=0.571 Sum_probs=32.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..||+||||+|++|+.+|.+|++.|.+|+|+|++
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g 39 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG 39 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4599999999999999999999999999999994
No 341
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.16 E-value=0.0011 Score=75.47 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=71.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-----------CCC-CHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-----------PGF-DPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-----------~~~-d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
.+|+|||+|+.|+..|..+++.|.+|+++++.+.+- +.. ..++...+.+.+.+..+|+++.++.+..+
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i 208 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS 208 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence 579999999999999999999999999999876542 110 12333444444544248999999988888
Q ss_pred EecCCCCeEEEEEecCC-C--------CCCCceEecCEEEEeeCCCCCCC
Q 008714 338 TPAKDGKPVTIELIDAK-T--------KEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~-~--------~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.. .+....+...... . .+...++.+|.||+|||..|...
T Consensus 209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~ 256 (965)
T 2gag_A 209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI 256 (965)
T ss_dssp ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence 64 2222222211100 0 01113689999999999987653
No 342
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=97.15 E-value=0.0033 Score=67.12 Aligned_cols=46 Identities=7% Similarity=0.093 Sum_probs=36.9
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
||+++.+ .|+++..++++..+.|++.+| .++.+|.||.|+|.....
T Consensus 209 Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G------~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 209 GVRHVED-RVEHVQRDANGNIESVRTATG------RVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp CCEEEEC-CEEEEEECTTSCEEEEEETTS------CEEECSEEEECCGGGCCC
T ss_pred CcEEEEC-eEeEEEEcCCCCEEEEEECCC------CEEECCEEEECCCCchhh
Confidence 8999999 899998755565567777665 579999999999987654
No 343
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=97.15 E-value=0.00095 Score=67.39 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.++|+|||+|.+|+-.|..|+ .|.+|+++++.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 478999999999999999999 599999999875
No 344
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.09 E-value=0.00025 Score=75.38 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=30.8
Q ss_pred CccEEEECCChHHHHHHHHHHH-cCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viEk~ 133 (556)
+||+||||||+||+.+|.+|++ .+++|+|||++
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG 50 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG 50 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 5999999999999999999998 68999999983
No 345
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=97.05 E-value=0.0025 Score=71.69 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=30.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~ 302 (556)
.+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus 5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~ 38 (830)
T 1pj5_A 5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 38 (830)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 479999999999999999999998 999999865
No 346
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.04 E-value=0.00022 Score=75.91 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..||+||||+|+||+.+|.+|++ |.+|+|+|++
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG 57 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERG 57 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSS
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEecC
Confidence 45999999999999999999999 9999999994
No 347
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=97.03 E-value=0.00036 Score=74.79 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=31.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-CeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk~ 133 (556)
..||+||||||.||+.+|.+|++.+ .+|+|||++
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG 39 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG 39 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence 3599999999999999999999987 799999993
No 348
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=97.01 E-value=0.00066 Score=69.55 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~ 302 (556)
..|+|||+|.+|+-+|..|++. |.+|+++++.+
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999999999999999999 99999998753
No 349
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=97.01 E-value=0.0041 Score=64.19 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=30.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~ 302 (556)
..|+|||+|..|+-.|..|++.|. +|+++++.+
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999999 999998764
No 350
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=96.96 E-value=0.00044 Score=75.28 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--------CeEEEecC-C-cC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--------LKTAIIEG-D-VV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--------~~V~viEk-~-~~ 135 (556)
.++|+|||||++||+||..|.+.| ++|+|+|+ + .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 368999999999999999999998 99999999 6 88
No 351
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=96.96 E-value=0.0032 Score=67.33 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=30.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
-.|+|||||..|+-+|..|++.|.+|+++++.
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~ 50 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMN 50 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999886
No 352
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=96.91 E-value=0.0052 Score=64.91 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=39.2
Q ss_pred HHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 318 ~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
+.+++ .|++++.+ ++++++.++++..+.|++.+| +++.+|.||.|+|.....
T Consensus 181 ~~a~~-~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g------~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 181 EYAIA-RGVRHVVD-DVQHVGQDERGWISGVHTKQH------GEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHH-TTCEEEEC-CEEEEEECTTSCEEEEEESSS------CEEECSEEEECCGGGCCC
T ss_pred HHHHH-CCCEEEEC-eEeEEEEcCCCCEEEEEECCC------CEEEcCEEEECCCcchHH
Confidence 33344 68899988 899998755565567777665 579999999999986554
No 353
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=96.89 E-value=0.0032 Score=67.20 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=68.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CC-----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD----------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d----------------------------------- 309 (556)
..|+|||+|++|+-+|..|++.|.+|+++++.+.+... +.
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 37999999999999999999999999999876532100 00
Q ss_pred -------------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCC
Q 008714 310 -------------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEP 358 (556)
Q Consensus 310 -------------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~ 358 (556)
..+.+.+.+.+.+ . +++++++++++.++++ +++++.+.. .++
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~---v~~~~~v~~~~~~~~~--v~v~~~~~~-~G~ 179 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE-R---LRTRSRLDSFEQRDDH--VRATITDLR-TGA 179 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG-G---EECSEEEEEEEECSSC--EEEEEEETT-TCC
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH-h---cccCcEEEEEEEeCCE--EEEEEEECC-CCC
Confidence 1233444455543 2 7889999999875443 667776521 112
Q ss_pred CceEecCEEEEeeCCC
Q 008714 359 KDTLEVDAALIATGRA 374 (556)
Q Consensus 359 ~~~i~~D~vi~a~G~~ 374 (556)
..++.+|.||.|.|..
T Consensus 180 ~~~i~a~~vVgADG~~ 195 (549)
T 2r0c_A 180 TRAVHARYLVACDGAS 195 (549)
T ss_dssp EEEEEEEEEEECCCTT
T ss_pred EEEEEeCEEEECCCCC
Confidence 2579999999999964
No 354
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=96.85 E-value=0.009 Score=62.89 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=75.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCC--------------CeEEEEEeCCCC-------CCC--------------------C-
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG--------------SEVTFIEALDQL-------MPG--------------------F- 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtli~~~~~l-------l~~--------------------~- 308 (556)
.|+|||+|++|+-+|..|.+.| ..+.++++.+.+ +|+ +
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 5999999999999999887643 356777776532 121 0
Q ss_pred -----------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCC------CeEEEEEecCCCCCCC
Q 008714 309 -----------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG------KPVTIELIDAKTKEPK 359 (556)
Q Consensus 309 -----------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g------~~~~v~~~~g~~~~~~ 359 (556)
-.++.++++...++ .+..+.+++.|++|+..+.+ ...+|+..++.+ ++.
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~-~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~-g~~ 198 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQ-FSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET-GEI 198 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHT-TGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT-CCE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHH-cCCceEcceEEEeeccccccccccccceEEEEEecCCC-ceE
Confidence 12566677666665 77788999999999875432 246777776632 233
Q ss_pred ceEecCEEEEeeCCCCCCCC
Q 008714 360 DTLEVDAALIATGRAPFTNG 379 (556)
Q Consensus 360 ~~i~~D~vi~a~G~~p~~~~ 379 (556)
.++.++.||+|+|..|+...
T Consensus 199 ~~~~ar~vVlatG~~P~iP~ 218 (501)
T 4b63_A 199 SARRTRKVVIAIGGTAKMPS 218 (501)
T ss_dssp EEEEEEEEEECCCCEECCCT
T ss_pred EEEEeCEEEECcCCCCCCCC
Confidence 57889999999999888653
No 355
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=96.83 E-value=0.005 Score=64.89 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=29.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 69999999999999999999999999998754
No 356
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=96.80 E-value=0.00063 Score=72.85 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHc-CCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk~ 133 (556)
..||+||||||.||+.+|.+|++. +.+|+|||++
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG 52 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG 52 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSS
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence 359999999999999999999985 8999999993
No 357
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=96.80 E-value=0.005 Score=66.97 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred CeEEEEcCchhHHHHHHHHHh-CCCeEEEEEeCCCCCC------------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA-LGSEVTFIEALDQLMP------------------------------------------ 306 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~-~g~~Vtli~~~~~ll~------------------------------------------ 306 (556)
..|+|||+|++|+-+|..|++ .|.+|+++++.+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 379999999999999999999 9999999987643210
Q ss_pred ----------------C--------CC-HHHHHHHHHHHhCCCce--EEEcCceEEEEEecCC--CCeEEEEEecCC--C
Q 008714 307 ----------------G--------FD-PEIGKLAQRVLINPRKI--DYHTGVFATKITPAKD--GKPVTIELIDAK--T 355 (556)
Q Consensus 307 ----------------~--------~d-~~~~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~--g~~~~v~~~~g~--~ 355 (556)
. ++ ..+.+.+.+.+.+ .|+ ++++++++++++.+++ +..+++++.+.. .
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~-~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~ 191 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRN-SPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAH 191 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHH-STTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHh-CCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence 0 00 1344555566655 555 9999999999987643 234677776410 0
Q ss_pred CCCCceEecCEEEEeeCCC
Q 008714 356 KEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 356 ~~~~~~i~~D~vi~a~G~~ 374 (556)
++...++.+|.||.|.|..
T Consensus 192 ~G~~~~i~a~~vVgADG~~ 210 (639)
T 2dkh_A 192 AGQIETVQARYVVGCDGAR 210 (639)
T ss_dssp TTCEEEEEEEEEEECCCTT
T ss_pred CCCeEEEEeCEEEECCCcc
Confidence 1122578999999999964
No 358
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=96.80 E-value=0.0085 Score=63.51 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=36.5
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.|++++.+ .+++++.++++..+.|++.+| .++.+|.||.|+|.....
T Consensus 189 ~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g------~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 189 LGVTHIRD-HVSQIINNQHGDIEKLITKQN------GEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp SCCEEEEC-CEEEEEECTTSCEEEEEESSS------CEEECSEEEECSGGGCCC
T ss_pred CCCEEEEe-EEEEEEecCCCcEEEEEECCC------CEEEcCEEEECCCcchHH
Confidence 58899988 588988765555566777665 469999999999997654
No 359
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0053 Score=64.18 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=29.0
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.|+|||+|..|+-.|..+++.|.+|+++++.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3899999999999999999999999999876
No 360
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=96.75 E-value=0.0029 Score=69.91 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=29.5
Q ss_pred ccEEEEC--CChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIG--AGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIG--gG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+||| ||..|+.+|..|++.|.+|+||++
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~ 561 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSG 561 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEES
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEec
Confidence 5899999 999999999999999999999997
No 361
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=96.71 E-value=0.0015 Score=66.34 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~l 304 (556)
++|+|||||+.|+.+|..|++. |.+|+++++.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 3699999999999999999999 9999999987654
No 362
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=96.69 E-value=0.0013 Score=69.57 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=32.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.++|++|||+|++|+.+|.+|++.|.+|+|||+.
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~ 43 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 43 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence 4699999999999999999999999999999993
No 363
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=96.68 E-value=0.0012 Score=69.81 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=31.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|++|||+|++|+.+|.+|++.|.+|+|||+.
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~ 37 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 37 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 589999999999999999999999999999994
No 364
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=96.67 E-value=0.0018 Score=69.50 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=39.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
+++|||+|||+|..|...|..|++.|.+|++||| +.+||.|.
T Consensus 6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence 4479999999999999999999999999999999 88999876
No 365
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=96.58 E-value=0.00082 Score=71.80 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=30.9
Q ss_pred CccEEEECCChHHHHHHHHHHH-cCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viEk~ 133 (556)
.||+||||||.||+.+|.+|++ .+.+|+|||++
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG 35 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAG 35 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSS
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecC
Confidence 4899999999999999999999 69999999993
No 366
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=96.39 E-value=0.0095 Score=63.81 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=30.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999998654
No 367
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=96.32 E-value=0.0022 Score=69.05 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=31.8
Q ss_pred CCccEEEECCChHHHHHHHHHHH-cCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viEk~ 133 (556)
..||++|||+|++|+.+|.+|++ .|.+|+|||++
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g 57 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG 57 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 45999999999999999999999 79999999994
No 368
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=96.32 E-value=0.0082 Score=62.11 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=29.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC-CeEEEEEe
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG-SEVTFIEA 300 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~ 300 (556)
..|+|||+|.+|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
No 369
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=96.26 E-value=0.0023 Score=68.23 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=31.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHc-CCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk~ 133 (556)
..+|++|||+|++|+.+|.+|++. |.+|+|||+.
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g 46 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAG 46 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 359999999999999999999998 8999999994
No 370
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=96.20 E-value=0.022 Score=61.32 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=29.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG--SEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~ 302 (556)
.|+|||+|..|+-.|..|++.| .+|+++++.+
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 5999999999999999999999 9999999763
No 371
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=96.15 E-value=0.027 Score=61.48 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=29.8
Q ss_pred eEEEEcCchhHHHHHHHHHh-----CCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTA-----LGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~-----~g~~Vtli~~~~ 302 (556)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 69999999999999999999 999999998764
No 372
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=96.02 E-value=0.0048 Score=58.28 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.7
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999987754
No 373
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=96.00 E-value=0.009 Score=61.98 Aligned_cols=128 Identities=19% Similarity=0.176 Sum_probs=78.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+|.|||.|.+|+++|..|.++|++|++.|.... ..
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~-----------------------------------------~~--- 45 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF-----------------------------------------DE--- 45 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG-----------------------------------------GG---
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc-----------------------------------------cC---
Confidence 5799999999999999999999999999997320 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEE-eCeEEEeCCCCCCCCCCCC--CCCCeEec
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVT-AKDIIIATGSVPFVPKGIE--VDGKTVIT 258 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~-~d~lViAtG~~p~~p~~~~--~~~~~v~t 258 (556)
. ...+.+++.|+++..|.. .. + ..-. +|.||+++|..+..|.... ..+..+++
T Consensus 46 ----------~----~~~~~L~~~gi~~~~g~~----~~-----~-~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~v~~ 101 (451)
T 3lk7_A 46 ----------N----PTAQSLLEEGIKVVCGSH----PL-----E-LLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLT 101 (451)
T ss_dssp ----------C----HHHHHHHHTTCEEEESCC----CG-----G-GGGSCEEEEEECTTSCTTSHHHHHHHHTTCCEEC
T ss_pred ----------C----hHHHHHHhCCCEEEECCC----hH-----H-hhcCCCCEEEECCcCCCCChhHHHHHHCCCcEEe
Confidence 0 001234456998887641 10 0 0012 8999999998876654211 23444554
Q ss_pred ccccccCCCCCCeEEEEcC-chh--HHHHHHHHHhCCCeEEE
Q 008714 259 SDHALKLEFVPDWIAIVGS-GYI--GLEFSDVYTALGSEVTF 297 (556)
Q Consensus 259 ~~~~~~~~~~~~~v~VvG~-G~~--g~e~A~~l~~~g~~Vtl 297 (556)
--++.......+.|.|-|. |-+ .--++..|...|.++.+
T Consensus 102 ~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 102 EVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp HHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4333221112355666663 432 33366777888877744
No 374
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=95.78 E-value=0.063 Score=56.96 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=29.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
-.|+|||+|..|+-.|..+++ |.+|+++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 369999999999999999999 999999998753
No 375
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=95.30 E-value=0.042 Score=54.25 Aligned_cols=127 Identities=20% Similarity=0.201 Sum_probs=76.8
Q ss_pred ccEEEECCChHHHH-HHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHG-AALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~-aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|.|||.|.+|++ +|..|.++|++|++.|+... | .
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~----------~--------------------------------~- 41 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY----------P--------------------------------P- 41 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC----------T--------------------------------T-
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC----------c--------------------------------H-
Confidence 47999999999997 78889999999999997320 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceE-EEeCeEEEeCCCCCCCCCCCC--CCCCeEe
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNI-VTAKDIIIATGSVPFVPKGIE--VDGKTVI 257 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~-~~~d~lViAtG~~p~~p~~~~--~~~~~v~ 257 (556)
..+.+++.|+++..|. +... -. ..+|.||+.+|..|..|.... ..|..++
T Consensus 42 -----------------~~~~L~~~gi~v~~g~----~~~~------l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 42 -----------------MSTQLEALGIDVYEGF----DAAQ------LDEFKADVYVIGNVAKRGMDVVEAILNLGLPYI 94 (326)
T ss_dssp -----------------HHHHHHHTTCEEEESC----CGGG------GGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred -----------------HHHHHHhCCCEEECCC----CHHH------cCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEE
Confidence 0112344688887653 1100 01 248999999998876664221 2344555
Q ss_pred cccccc-c-CCCCCCeEEEEcC-chh--HHHHHHHHHhCCCeEEEE
Q 008714 258 TSDHAL-K-LEFVPDWIAIVGS-GYI--GLEFSDVYTALGSEVTFI 298 (556)
Q Consensus 258 t~~~~~-~-~~~~~~~v~VvG~-G~~--g~e~A~~l~~~g~~Vtli 298 (556)
+--+++ . +....+-|.|-|. |-+ .--++..|...|.++.++
T Consensus 95 ~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~ 140 (326)
T 3eag_A 95 SGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFL 140 (326)
T ss_dssp EHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred eHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 433322 2 1222245666673 433 333567778888777543
No 376
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=95.21 E-value=0.015 Score=60.00 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+|+|||.|.+|+++|..|.++|++|+++|.... .|..
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~---------~~~~--------------------------------- 43 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT---------PPGL--------------------------------- 43 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS---------CTTG---------------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC---------cchh---------------------------------
Confidence 4699999999999999999999999999997320 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCC--CCCCeEecc
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIE--VDGKTVITS 259 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~--~~~~~v~t~ 259 (556)
..++ .|+++..|.. . .+.-. .+|.+|+++|..|..|.... .++..+++-
T Consensus 44 ------------------~~l~-~G~~~~~g~~------~---~~~~~-~~d~vV~s~gi~~~~p~~~~a~~~~~~v~~~ 94 (439)
T 2x5o_A 44 ------------------DKLP-EAVERHTGSL------N---DEWLM-AADLIVASPGIALAHPSLSAAADAGIEIVGD 94 (439)
T ss_dssp ------------------GGSC-TTSCEEESSC------C---HHHHH-TCSEEEECTTSCTTCHHHHHHHHTTCEEECH
T ss_pred ------------------HHhh-CCCEEEECCC------c---HHHhc-cCCEEEeCCCCCCCCHHHHHHHHCCCcEEEH
Confidence 0112 3555554320 0 00001 47899999998776554322 245555543
Q ss_pred cccccCCCCCCeEEEEcC-c--hhHHHHHHHHHhCCCeEEEE
Q 008714 260 DHALKLEFVPDWIAIVGS-G--YIGLEFSDVYTALGSEVTFI 298 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~-G--~~g~e~A~~l~~~g~~Vtli 298 (556)
-+........+.|.|-|. | .+.--++..|...|.++.+.
T Consensus 95 ~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 95 IELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp HHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 222211122467777773 2 34455678888888887654
No 377
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=95.01 E-value=0.16 Score=54.75 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=28.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 69999999999999999999999999998753
No 378
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=94.98 E-value=0.015 Score=61.13 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=30.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
|+|+|||+|..|+-.|..|++.|.+|+++++++++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999988765
No 379
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=94.84 E-value=0.036 Score=47.16 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.-.|+|||.|.-|...|..|.+.|++|+++|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 357999999999999999999999999999984
No 380
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=94.72 E-value=0.025 Score=58.22 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 266 EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 266 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+..++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 19 ~~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 19 SHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp ----CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CcCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3345789999999999999999999999999999876
No 381
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=94.16 E-value=0.056 Score=46.78 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=32.7
Q ss_pred cCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 264 KLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 264 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
......++++|+|+|.+|..++..|.+.|.+|+++++.+
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 334456899999999999999999999999999998764
No 382
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=93.96 E-value=0.049 Score=57.04 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=35.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP 306 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~ 306 (556)
.+++|+|||+|.+|+..|..|.+.|.+|+++++.+++..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 467999999999999999999999999999999877644
No 383
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=93.96 E-value=0.061 Score=46.57 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..|+|||+|.-|...|..|.+.|.+|+++|++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999999999999999983
No 384
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=93.83 E-value=0.062 Score=45.54 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..++|+|+|.-|...|..|.+.|++|+++|++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 47999999999999999999999999999984
No 385
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=93.81 E-value=0.09 Score=51.81 Aligned_cols=77 Identities=21% Similarity=0.125 Sum_probs=55.1
Q ss_pred CCeEEEEcCchhHHH-HHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE
Q 008714 269 PDWIAIVGSGYIGLE-FSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT 347 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e-~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~ 347 (556)
.+++.|||.|.+|+. +|..|.+.|.+|++.++.+. ++ ..+.|++ .||+++.+... +
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~----~~~~L~~-~gi~v~~g~~~-------~----- 60 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP----MSTQLEA-LGIDVYEGFDA-------A----- 60 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT----HHHHHHH-TTCEEEESCCG-------G-----
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH----HHHHHHh-CCCEEECCCCH-------H-----
Confidence 579999999999997 89999999999999997653 11 2234554 68877654210 0
Q ss_pred EEEecCCCCCCCce-EecCEEEEeeCCCCCCCC
Q 008714 348 IELIDAKTKEPKDT-LEVDAALIATGRAPFTNG 379 (556)
Q Consensus 348 v~~~~g~~~~~~~~-i~~D~vi~a~G~~p~~~~ 379 (556)
... ..+|+||+++|..|+...
T Consensus 61 -----------~l~~~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 61 -----------QLDEFKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp -----------GGGSCCCSEEEECTTCCTTCHH
T ss_pred -----------HcCCCCCCEEEECCCcCCCCHH
Confidence 011 258999999999887653
No 386
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=93.79 E-value=0.053 Score=55.38 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
++|+|||+|..|+-.|..|++.|.+|+++++.++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~ 34 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAM 34 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998754
No 387
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=93.72 E-value=0.065 Score=45.08 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|+|||+|..|...|..|.+.|.+|+++|++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 47999999999999999999999999999973
No 388
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=93.49 E-value=0.081 Score=45.59 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..++|+|+|..|...|..|.+.|++|+++|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 46999999999999999999999999999983
No 389
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=93.43 E-value=0.067 Score=54.57 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=31.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
++|+|||+|..|+-.|..|++.|.+|+++++++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~ 34 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPI 34 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 3799999999999999999999999999998754
No 390
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=93.38 E-value=0.079 Score=42.98 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKG-LKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk~ 133 (556)
..|+|+|+|..|...+..|.+.| ++|++++++
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999873
No 391
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=93.19 E-value=0.12 Score=53.48 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=56.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT 347 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~ 347 (556)
.+++|.|||.|.+|+-+|..|.+.|.+|+..+.++.- .+. ..+.|++ .||+++.+... +.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~~----~~~~L~~-~gi~~~~g~~~-------~~---- 67 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----ENP----TAQSLLE-EGIKVVCGSHP-------LE---- 67 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----GCH----HHHHHHH-TTCEEEESCCC-------GG----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----CCh----HHHHHHh-CCCEEEECCCh-------HH----
Confidence 4689999999999999999999999999999876521 111 2234555 68887765320 00
Q ss_pred EEEecCCCCCCCceEe-cCEEEEeeCCCCCCC
Q 008714 348 IELIDAKTKEPKDTLE-VDAALIATGRAPFTN 378 (556)
Q Consensus 348 v~~~~g~~~~~~~~i~-~D~vi~a~G~~p~~~ 378 (556)
..-. +|.||+++|..|+..
T Consensus 68 ------------~~~~~~d~vv~spgi~~~~p 87 (451)
T 3lk7_A 68 ------------LLDEDFCYMIKNPGIPYNNP 87 (451)
T ss_dssp ------------GGGSCEEEEEECTTSCTTSH
T ss_pred ------------hhcCCCCEEEECCcCCCCCh
Confidence 0112 799999999988664
No 392
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=92.94 E-value=0.082 Score=54.08 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
+|+|||+|..|+-.|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6999999999999999999999999999987654
No 393
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=92.94 E-value=0.085 Score=54.76 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=32.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCC--eEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGS--EVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~--~Vtli~~~~~l 304 (556)
++|+|||||.+|+-.|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 589999999999999999999998 99999987654
No 394
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=92.92 E-value=0.096 Score=52.61 Aligned_cols=37 Identities=41% Similarity=0.622 Sum_probs=33.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC-CCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL-DQL 304 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~-~~l 304 (556)
.+.+|+|||+|.+|+-.|..|.+.|.+|++++++ +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3579999999999999999999999999999988 543
No 395
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=92.77 E-value=0.12 Score=53.97 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..+|+|||+|.+|+-.|..|.+.|.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 468999999999999999999999999999988765
No 396
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=92.59 E-value=0.1 Score=53.33 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~l 304 (556)
..+|+|||+|..|+-.|..|++.| .+|+++++++++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 468999999999999999999999 999999988765
No 397
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=92.48 E-value=0.11 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=30.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
++|+|||+|..|++.|..+++.|.+|+++++++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999765
No 398
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=92.48 E-value=0.09 Score=55.07 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=31.1
Q ss_pred CeEEEEcCchhHHHHHHHHHh-CCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTA-LGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~-~g~~Vtli~~~~~l 304 (556)
-.|+|||||.+|+-.|..|++ .|.+|+++++++++
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~ 46 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 369999999999999999987 59999999988755
No 399
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=92.44 E-value=0.13 Score=47.42 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEe
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEA 300 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~ 300 (556)
..+++|+|||||.+|..-+..|.+.|.+|+++.+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 3468999999999999999999999999999964
No 400
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=92.36 E-value=0.12 Score=51.53 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
..|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999975
No 401
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=92.16 E-value=0.13 Score=43.32 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..|+|+|+|..|...|..|.+.|.+|+++|++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999873
No 402
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=92.12 E-value=0.14 Score=51.63 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=32.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.+++|||+|.+|+-+|..|.+.|.+|+++++++++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999988765
No 403
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=92.10 E-value=0.12 Score=54.48 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=31.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~l 304 (556)
.+|+|||+|.+|+-.|..|.+.| .+|+++++++++
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 58999999999999999999999 999999877643
No 404
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=92.00 E-value=0.12 Score=53.65 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..+|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 468999999999999999999999999999988765
No 405
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=91.92 E-value=0.15 Score=47.00 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|||||..|...+..|.+.|.+|+||++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 5799999999999999999999999999986
No 406
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=91.78 E-value=0.073 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC------CeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG------SEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g------~~Vtli~~~~~l 304 (556)
++|+|||+|.+|+-.|..|++.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 58999999999999999999999 999999987654
No 407
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=91.73 E-value=0.13 Score=54.22 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.+|+|||+|..|+-.|..|++.|.+|+++++++++
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 39 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 39 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 57999999999999999999999999999987765
No 408
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=91.72 E-value=0.17 Score=42.85 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.+.++++|+|.|.+|..+|..|.+.|.+|+++++.
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 34578999999999999999999999999999874
No 409
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.60 E-value=0.2 Score=44.46 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHc-CCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK-GLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk~ 133 (556)
..|+|||+|..|...|..|.+. |++|+++|++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 4699999999999999999999 9999999984
No 410
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=91.50 E-value=0.14 Score=53.03 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=33.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP 306 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~ 306 (556)
.+|+|||+|..|+-.|..|++.|.+|+++++++++-.
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 48 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 48 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 4799999999999999999999999999999987643
No 411
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=91.40 E-value=0.16 Score=51.14 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||+|..|+.+|..|+.+|.+|+++|+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~ 221 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDV 221 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5799999999999999999999999999997
No 412
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=91.34 E-value=0.24 Score=42.52 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999874
No 413
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=91.23 E-value=0.13 Score=49.06 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|||||..|...+..|.+.|++|+||++
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap 44 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence 5799999999999999999999999999987
No 414
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=91.23 E-value=0.22 Score=52.03 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=75.1
Q ss_pred ccEEEECCChHHHH-HHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHG-AALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~-aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|.|||.|-+|++ +|..|.++|++|++.|... .
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~--------------------------------------------~- 57 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP--------------------------------------------N- 57 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC--------------------------------------------C-
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC--------------------------------------------C-
Confidence 57999999999997 6999999999999998621 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCC--CCCCeEec
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIE--VDGKTVIT 258 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~--~~~~~v~t 258 (556)
. . ...+++.|+++..|. +... ...+|.||+.+|..+..|.... ..|..+++
T Consensus 58 -----------~-~----~~~l~~~gi~~~~g~----~~~~-------~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~ 110 (494)
T 4hv4_A 58 -----------S-V----TQHLTALGAQIYFHH----RPEN-------VLDASVVVVSTAISADNPEIVAAREARIPVIR 110 (494)
T ss_dssp -----------H-H----HHHHHHTTCEEESSC----CGGG-------GTTCSEEEECTTSCTTCHHHHHHHHTTCCEEE
T ss_pred -----------H-H----HHHHHHCCCEEECCC----CHHH-------cCCCCEEEECCCCCCCCHHHHHHHHCCCCEEc
Confidence 0 0 113445688888763 1110 1148999999998776553211 23444554
Q ss_pred ccccc-cCCCCCCeEEEEcC-ch--hHHHHHHHHHhCCCeEE
Q 008714 259 SDHAL-KLEFVPDWIAIVGS-GY--IGLEFSDVYTALGSEVT 296 (556)
Q Consensus 259 ~~~~~-~~~~~~~~v~VvG~-G~--~g~e~A~~l~~~g~~Vt 296 (556)
--+++ .+....+.|.|-|. |- +.--++..|...|.+.+
T Consensus 111 ~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~ 152 (494)
T 4hv4_A 111 RAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPT 152 (494)
T ss_dssp HHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCCCE
Confidence 33332 22222235677773 42 23446677777786543
No 415
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=91.20 E-value=0.19 Score=52.60 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=33.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..+|+|||+|..|+-.|..|.+.|.+|+++++.+++
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 468999999999999999999999999999988765
No 416
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=91.19 E-value=0.17 Score=52.04 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=32.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.+|+|||+|..|+-.|..|++.|.+|+++++++++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999987765
No 417
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=91.18 E-value=0.18 Score=51.00 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.+++|||+|.+|+-+|..|++.|.+|+++++++++
T Consensus 30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 57999999999999999999999999999988765
No 418
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=91.04 E-value=0.14 Score=50.66 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC------CeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG------SEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g------~~Vtli~~~~ 302 (556)
+.|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 36999999999999999999998 8999999874
No 419
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=90.74 E-value=0.2 Score=50.10 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||+|..|+.+|..|+.+|.+|+++|+
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~ 215 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDV 215 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeC
Confidence 5799999999999999999999999999997
No 420
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.71 E-value=0.2 Score=42.34 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=29.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 68999999999999999999999999999864
No 421
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=90.70 E-value=0.22 Score=49.71 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
+.+|||+|+|.||+.+|..|...|. +|+++|+.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4689999999999999999999999 89999984
No 422
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=90.62 E-value=0.3 Score=40.81 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=29.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999863
No 423
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=90.56 E-value=0.21 Score=50.04 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=31.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
+++|||+|..|+-.|..|++.|.+|+++++++++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 6899999999999999999999999999987654
No 424
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.2 Score=49.12 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=30.5
Q ss_pred CeEEEEcCchhHHHHHHHHH--hCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYT--ALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~--~~g~~Vtli~~~~~l 304 (556)
..|+|||+|+.|+-.|..|+ +.|.+|+++++.+.+
T Consensus 66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~ 102 (326)
T 3fpz_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 46999999999999999996 469999999987644
No 425
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=90.53 E-value=0.27 Score=39.71 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEAL 301 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~ 301 (556)
.++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 899999874
No 426
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=90.32 E-value=0.22 Score=51.92 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=32.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
.+|+|||+|..|+-.|..|.+.|.+|+++++.+++
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 74 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI 74 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 58999999999999999999999999999988765
No 427
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=90.27 E-value=0.18 Score=51.15 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~~~l 304 (556)
.+|+|||+|.+|+-.|..|++. |.+|+++++++++
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 5799999999999999999998 9999999988654
No 428
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=90.25 E-value=0.21 Score=51.74 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~l 304 (556)
.+|+|||+|.+|+-.|..|++.| .+|+++++.+++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~ 41 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 58999999999999999999999 999999987654
No 429
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=89.86 E-value=0.32 Score=52.87 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=33.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..++|+|||+|+.|+..|..|.+.|.+|+++++.+++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999987643
No 430
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=89.83 E-value=0.23 Score=45.52 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
+|+|||+|.-|...|..|.+.|++|+++|++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 431
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=89.49 E-value=0.33 Score=54.11 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..++|+|||+|+.|+..|..|.+.|.+|+++++.+++
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~ 313 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence 4579999999999999999999999999999987643
No 432
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=89.48 E-value=0.32 Score=46.29 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
..+++|+|||+|.+|...+..|.+.|.+|+++.+.
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 34689999999999999999999999999999864
No 433
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=89.48 E-value=0.31 Score=48.51 Aligned_cols=33 Identities=12% Similarity=0.377 Sum_probs=30.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
+.+|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4689999999999999999999998 79999984
No 434
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=89.41 E-value=0.36 Score=44.03 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=31.4
Q ss_pred cCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 264 KLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 264 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
.++...++|.|||.|.+|.-+|..|.+.|.+|++++|.+.
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 3344467899999999999999999999999999987654
No 435
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=89.24 E-value=0.58 Score=48.39 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=40.4
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
.+...+||+|||+|.+|+++|..|++.|++|+++|+ +.+||.|..
T Consensus 16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence 455679999999999999999999999999999999 789998764
No 436
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=89.18 E-value=0.31 Score=49.32 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|||+|.+|+.++..|+.+|.+|+++|+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~ 203 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDT 203 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 5799999999999999999999999999997
No 437
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=89.02 E-value=0.37 Score=45.29 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCCc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDV 134 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~ 134 (556)
.+|+|||+|..|..+|..|++.|. +++|+|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 479999999999999999999997 799999864
No 438
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=88.75 E-value=0.37 Score=50.17 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=32.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~l 304 (556)
..+++|||+|.+|+-.|..|.+.| .+|+++++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 467999999999999999999998 799999988754
No 439
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=88.67 E-value=0.46 Score=45.55 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..+++.|++|+++|++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 47999999999999999999999999999973
No 440
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=88.64 E-value=0.28 Score=53.09 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCceeeCCCCccccC----------C-CCcCCCEEEecccCCC--CCcHHHHHHHHHHHHHHHh
Q 008714 391 RGFVPVDERMRVIDA----------N-GNLVPHLYCIGDANGK--MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 391 ~G~i~vd~~l~~~~~----------~-~t~~~~Vya~GD~~~~--~~~~~~A~~qg~~aa~~i~ 441 (556)
.|.|.||.+.|+.+. + +|++||+||+|+|++. ..+...+..+|++++++++
T Consensus 401 ~gGi~~d~~~~vl~~~~~~~v~~~~~~~t~I~GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~aa 464 (643)
T 1jnr_A 401 EAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV 464 (643)
T ss_dssp CCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCccccccccccccccccccCCceeCCEEeeeccccccccccchhHHHHHHHHHHHHH
Confidence 346888866665321 1 3899999999999864 3466778888999888775
No 441
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=88.56 E-value=0.37 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||+|.+|+.++..|+.+|.+|+++|+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~ 203 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDV 203 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5799999999999999999999999999997
No 442
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=88.47 E-value=0.37 Score=40.42 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367999999999999999999999999999764
No 443
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=88.42 E-value=0.43 Score=47.54 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|||||.-|..++..++++|++|+++|.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~ 32 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDK 32 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999999999999997
No 444
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=88.20 E-value=0.4 Score=47.81 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|+|+|.+|+.++..|+..|.+|+++++
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr 198 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDI 198 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 5799999999999999999999999999987
No 445
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=88.14 E-value=0.38 Score=50.62 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=53.9
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHH-HHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLE-FSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e-~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
++......+-+..+++.+||-|-+|+- +|..|.+.|.+|+..+.... + + ..+.|++ .||++..+...
T Consensus 7 ~~~~~~~~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~--~---~-----~~~~L~~-~gi~~~~G~~~- 74 (524)
T 3hn7_A 7 HHHHHHENLYFQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY--P---P-----MSTQLEQ-AGVTIEEGYLI- 74 (524)
T ss_dssp ------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--T---T-----HHHHHHH-TTCEEEESCCG-
T ss_pred cccccccceeecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC--c---H-----HHHHHHH-CCCEEECCCCH-
Confidence 333333445566799999999999997 68889999999999987642 1 1 2334554 68877654210
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+ .....+|+||+++|..|+..
T Consensus 75 ------~----------------~~~~~~d~vV~Spgi~~~~p 95 (524)
T 3hn7_A 75 ------A----------------HLQPAPDLVVVGNAMKRGMD 95 (524)
T ss_dssp ------G----------------GGCSCCSEEEECTTCCTTSH
T ss_pred ------H----------------HcCCCCCEEEECCCcCCCCH
Confidence 0 01124799999999887664
No 446
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=87.95 E-value=0.53 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|++|+++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 46999999999999999999999999999973
No 447
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=87.86 E-value=0.35 Score=50.47 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCCeEEEEcCchhHHH-HHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeE
Q 008714 268 VPDWIAIVGSGYIGLE-FSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPV 346 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e-~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~ 346 (556)
..+++.|||-|-+|+- +|..|.+.|.+|+..+..+ .+ . .+.|++ .||++..+... +
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~------~~-~----~~~l~~-~gi~~~~g~~~-------~---- 77 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP------NS-V----TQHLTA-LGAQIYFHHRP-------E---- 77 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC------CH-H----HHHHHH-TTCEEESSCCG-------G----
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC------CH-H----HHHHHH-CCCEEECCCCH-------H----
Confidence 3589999999999996 8999999999999997653 12 1 234555 78887765210 0
Q ss_pred EEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 347 ~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
....+|+||+++|..|+..
T Consensus 78 -------------~~~~~d~vV~Spgi~~~~p 96 (494)
T 4hv4_A 78 -------------NVLDASVVVVSTAISADNP 96 (494)
T ss_dssp -------------GGTTCSEEEECTTSCTTCH
T ss_pred -------------HcCCCCEEEECCCCCCCCH
Confidence 1124799999999887654
No 448
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=87.76 E-value=0.49 Score=46.23 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=29.2
Q ss_pred ccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 261 HALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 261 ~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
...++....++|+|||+|.+|.-+|..|++.|.+|+++ ++
T Consensus 11 ~~~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 11 HHENLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp ---------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cchhhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 33445566789999999999999999999999999999 53
No 449
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=87.67 E-value=0.22 Score=48.61 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.++|.|||+|..|..+|..++..|.+|++++..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999998654
No 450
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.33 E-value=0.43 Score=42.27 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=30.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEAL 301 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~ 301 (556)
.++++|+|.|.+|..+|..|.+. |.+|+++++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 46899999999999999999999 9999999864
No 451
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=87.08 E-value=0.55 Score=45.87 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|.+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 47999999999999999999999999999874
No 452
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=87.06 E-value=0.76 Score=45.17 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|+ +|+++|.+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~ 42 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 42 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 479999999999999999999998 99999973
No 453
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=86.45 E-value=0.79 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=30.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+.++.|||.|.-||..|..+++.|++|+.+|-
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Di 52 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDV 52 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEEC
Confidence 346899999999999999999999999999996
No 454
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=86.36 E-value=0.64 Score=45.29 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--eEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~ 133 (556)
.+|+|||+|..|...|..|++.|+ +|+++|++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 479999999999999999999998 99999873
No 455
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=86.24 E-value=0.76 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|+ +|+++|++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~ 37 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA 37 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 479999999999999999999998 99999973
No 456
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=86.18 E-value=0.27 Score=41.70 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..|+|||+|..|...+..|.+.|.+|+++++.
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~ 53 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999873
No 457
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=86.17 E-value=0.64 Score=45.31 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|.|||+|.-|..-|..++..|++|+++|.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~ 37 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDI 37 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence 4799999999999999999999999999997
No 458
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=86.00 E-value=0.56 Score=51.79 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=32.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+++
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 468999999999999999999999999999986654
No 459
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=85.99 E-value=0.63 Score=46.51 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|+|+|..|..+|..|+..|.+|+++|+
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~ 197 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDV 197 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999999999999999999999999987
No 460
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=85.99 E-value=0.67 Score=44.85 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|.+.|++|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999873
No 461
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=85.90 E-value=0.59 Score=45.48 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|.+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence 47999999999999999999999999999873
No 462
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=85.84 E-value=0.59 Score=47.83 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=32.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll 305 (556)
.+++|||+|..|+-.|..|++.|.+|+++++++.+-
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g 42 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence 469999999999999999999999999999887653
No 463
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=85.60 E-value=0.68 Score=46.44 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
...|+|||+|..|..+|..|+..|.+|+++|+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~ 199 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDI 199 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 35799999999999999999999999999987
No 464
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=85.58 E-value=0.72 Score=45.62 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|..|...|..|++.|++|++++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47999999999999999999999999999873
No 465
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=85.32 E-value=0.38 Score=49.76 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l 320 (556)
...++++|+|||.+|..+|..|.+ ..+|.++++ |++-.+.+.+.|
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~--------d~~r~~~la~~l 277 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER--------NLQRAEKLSEEL 277 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES--------CHHHHHHHHHHC
T ss_pred ccccEEEEEcchHHHHHHHHHhhh-cCceEEEec--------CHHHHHHHHHHC
Confidence 345899999999999999999864 589999976 456666666665
No 466
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=85.24 E-value=0.83 Score=44.93 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|.|||+|.-|...|..|++.|.+|+++++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4799999999999999999999999999986
No 467
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=85.11 E-value=0.8 Score=43.84 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=30.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
++|.|||+|.+|..+|..|++.|.+|+++++.+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999998754
No 468
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=85.05 E-value=0.46 Score=40.27 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
+++++|||+|.+|..++..|...|.+|+++.|.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 789999999999999999999999888888764
No 469
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=85.04 E-value=0.72 Score=47.58 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|+|||||..|...+..|.+.|.+|+|+++
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~ 43 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence 5799999999999999999999999999997
No 470
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=85.03 E-value=0.78 Score=46.58 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..|+|||.|..|...|..|.+.|.+|++||++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 46999999999999999999999999999973
No 471
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=85.00 E-value=0.74 Score=47.59 Aligned_cols=36 Identities=22% Similarity=0.460 Sum_probs=31.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~l 304 (556)
..+|+|||+|..|+-+|..|.+.|. +|+++++++++
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~ 40 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 40 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 3579999999999999999999998 89999887543
No 472
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=84.98 E-value=0.86 Score=43.49 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
+|.|||+|.-|...|..|.+.|++|++++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcC
Confidence 5899999999999999999999999999983
No 473
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=84.78 E-value=0.92 Score=43.10 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..++|+|+|..|..+|..|++.|.+|++++|.
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 47999999999999999999999999999873
No 474
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=84.74 E-value=0.68 Score=44.65 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=30.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..+|.|||.|.-|...|..|++.|++|+++|+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr 46 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDI 46 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 35899999999999999999999999999998
No 475
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=84.45 E-value=1 Score=43.67 Aligned_cols=33 Identities=15% Similarity=0.410 Sum_probs=30.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
+.+|.|||.|.-|...|..|++.|++|++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357999999999999999999999999999983
No 476
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=84.42 E-value=1.1 Score=43.87 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk 132 (556)
.+|.|||+|..|...|..|+..|+ +|+++|.
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di 36 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI 36 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 479999999999999999999998 9999997
No 477
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=84.40 E-value=0.84 Score=49.13 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
-.|+|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus 47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~ 81 (623)
T 3pl8_A 47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 81 (623)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 36999999999999999999999999999987643
No 478
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=84.39 E-value=0.97 Score=41.07 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|.+.|.+|++++++
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999983
No 479
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=84.35 E-value=0.99 Score=42.80 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..+++|||+|-+|.+++..|.+.|.+|+|+.|.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999999999999999999999999999883
No 480
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=84.28 E-value=0.86 Score=48.66 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=30.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999999999999864
No 481
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=84.25 E-value=0.92 Score=44.26 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=30.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.+|+|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 58999999999999999999999999999874
No 482
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=84.17 E-value=0.74 Score=42.06 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=29.0
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999863
No 483
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=84.07 E-value=0.9 Score=47.10 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||.|.-|+..|..|++.|++|+++|++
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~ 40 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVD 40 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence 58999999999999999999999999999973
No 484
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=83.90 E-value=0.75 Score=44.29 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|.+.|.+|++++|+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence 47999999999999999999999999999984
No 485
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=83.84 E-value=0.94 Score=44.23 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||+|.-|...|..+++.|++|+++|++
T Consensus 7 ~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~ 38 (319)
T 2dpo_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred ceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999973
No 486
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=83.70 E-value=0.96 Score=46.48 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+|.|||.|.-|+..|..|++.|++|+++|++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence 37999999999999999999999999999983
No 487
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=83.21 E-value=1.2 Score=44.79 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+.+|+|+|+|.+|..++..+..+|.+|+++++.+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 36899999999999999999999999999998764
No 488
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=83.17 E-value=0.5 Score=51.40 Aligned_cols=36 Identities=31% Similarity=0.248 Sum_probs=33.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC--------CeEEEEEeCC-CC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG--------SEVTFIEALD-QL 304 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g--------~~Vtli~~~~-~l 304 (556)
+++|+|||+|.+|+-.|..|.+.| .+|+++++++ ++
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 368999999999999999999988 8999999988 77
No 489
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=83.13 E-value=1.9 Score=44.18 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..|.|||+|.-|...|..+++.|++|+++|++
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~ 86 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRN 86 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECc
Confidence 47999999999999999999999999999984
No 490
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=83.08 E-value=0.93 Score=45.19 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+.+|+|+|+|.+|..++..+..+|.+|+++++.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999999999999998764
No 491
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=82.87 E-value=1.2 Score=41.79 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCCc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGDV 134 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~~ 134 (556)
.+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999997 689999854
No 492
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=82.63 E-value=1.1 Score=43.13 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=30.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
++|.|||+|..|.-+|..|++.|.+|+++++.+
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999998753
No 493
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=82.62 E-value=1.3 Score=43.30 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
.+|.|||+|.-|...|..|++.|+ +|+++|.+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~ 47 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII 47 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 479999999999999999999998 99999973
No 494
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=82.61 E-value=1.2 Score=42.88 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
...|.|||+|..|..+|..|...|.+|+++++
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~ 188 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGAR 188 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEEC
Confidence 35799999999999999999999999999987
No 495
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=82.43 E-value=1.3 Score=42.63 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
...|.|||.|..|..+|..|+..|.+|+++++
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr 186 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGAR 186 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEEC
Confidence 35799999999999999999999999999987
No 496
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=82.41 E-value=1.2 Score=43.03 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-eEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL-KTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk~ 133 (556)
..++|||+|.+|..+|..|.+.|. +|+|++|.
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 479999999999999999999998 89999873
No 497
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=82.30 E-value=1.3 Score=42.14 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=29.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
+|.|||+|.+|.-+|..|.+.|.+|+++.|.+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 69999999999999999999999999998765
No 498
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=82.27 E-value=1.4 Score=43.73 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=30.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
|+|+|+|||..|.+++..++++|.+|.+++..+
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 689999999999999999999999999998664
No 499
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=82.23 E-value=0.97 Score=43.90 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=29.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.+|+|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence 57999999999999999999999999999874
No 500
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=82.21 E-value=1.3 Score=45.39 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.++.|||.|.-|+..|..|++.|++|+++|+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~ 39 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDK 39 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6899999999999999999999999999998
Done!