BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008716
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YGH|A Chain A, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
pdb|1YGH|B Chain B, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
Length = 164
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 123/163 (75%), Gaps = 1/163 (0%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNV-VVG 267
++F ++ND E+M+ L GLKNIF +QLP MPKEYI RLV DRSH S+ VIR + VVG
Sbjct: 2 IEFRVVNNDNTKENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRSHLSMAVIRKPLTVVG 61
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GITYRP+ ++F EI FCAI++ EQV+GYG LMNHLK + R+ + +FLTYADN A+G
Sbjct: 62 GITYRPFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYADNYAIG 121
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTD 370
YF KQGFTKEI L+K W GYIKDY+GG LM+C + P++ Y D
Sbjct: 122 YFKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLPRIRYLD 164
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 121/165 (73%), Gaps = 2/165 (1%)
Query: 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVV 265
G L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V
Sbjct: 3 GLLDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKV 62
Query: 266 VGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA 325
+GGI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A
Sbjct: 63 IGGICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFA 121
Query: 326 VGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTD 370
+GYF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y +
Sbjct: 122 IGYFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDYGN 166
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 1 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 60
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 119
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 120 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1PU9|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
pdb|1PUA|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 163
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 2 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 61
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 62 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 120
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 121 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 161
>pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And Histone H3 Peptide
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1Q2C|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19- Residue Histone H4 Peptide
pdb|1Q2D|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue P53 Peptide
Length = 162
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 1 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 60
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 119
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 120 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|1CM0|B Chain B, Crystal Structure Of The PcafCOENZYME-A Complex
pdb|1CM0|A Chain A, Crystal Structure Of The PcafCOENZYME-A Complex
Length = 168
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEI 282
++WL+GL+N+F+ QLP MPKEYI RLV D HK++ +I+ V+GGI +R + SQ F EI
Sbjct: 22 LMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPSQGFTEI 81
Query: 283 AFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEK 342
FCA+T++EQVKGYGT LMNHLK++ D + +FLTYAD A+GYF KQGF+KEI + K
Sbjct: 82 VFCAVTSNEQVKGYGTHLMNHLKEYHIKHD-ILNFLTYADEYAIGYFKKQGFSKEIKIPK 140
Query: 343 DRWQGYIKDYDGGILMECKIDPKLPYTD 370
++ GYIKDY+G LM C+++P++PYT+
Sbjct: 141 TKYVGYIKDYEGATLMGCELNPRIPYTE 168
>pdb|1Z4R|A Chain A, Human Gcn5 Acetyltransferase
Length = 168
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 114/147 (77%), Gaps = 1/147 (0%)
Query: 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEI 282
++WL+GL+N+F+ QLP MPKEYI RLV D HK++ +I+ V+GGI +R + +Q F EI
Sbjct: 23 LLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEI 82
Query: 283 AFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEK 342
FCA+T++EQVKGYGT LMNHLK++ + +FLTYAD A+GYF KQGF+K+I + K
Sbjct: 83 VFCAVTSNEQVKGYGTHLMNHLKEYHIK-HNILYFLTYADEYAIGYFKKQGFSKDIKVPK 141
Query: 343 DRWQGYIKDYDGGILMECKIDPKLPYT 369
R+ GYIKDY+G LMEC+++P++PYT
Sbjct: 142 SRYLGYIKDYEGATLMECELNPRIPYT 168
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTF 510
L +++LL + H AWPF EPV + PDYYE+I+ P+DL+TM++R+ S +YYVT
Sbjct: 3 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRS-RYYVTR 61
Query: 511 EMFVADVKRMFANARTYNSPDTIYYKCAT 539
++FVAD++R+ AN R YN PD+ Y +CA+
Sbjct: 62 KLFVADLQRVIANCREYNPPDSEYCRCAS 90
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTF 510
L +++LL + H AWPF EPV + PDYYE+I+ P+DL+TM++R+ S +YYVT
Sbjct: 7 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRS-RYYVTR 65
Query: 511 EMFVADVKRMFANARTYNSPDTIYYKCAT 539
++FVAD++R+ AN R YN PD+ Y +CA+
Sbjct: 66 KLFVADLQRVIANCREYNPPDSEYCRCAS 94
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 98.6 bits (244), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTF 510
L + ++S+L+ + H AWPF EPV + P YYE+I+ PMDL+TMS+R+++ +YYV+
Sbjct: 15 QLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKN-RYYVSK 73
Query: 511 EMFVADVKRMFANARTYNSPDTIYYKCA 538
++F+AD++R+F N + YN P++ YYKCA
Sbjct: 74 KLFMADLQRVFTNCKEYNPPESEYYKCA 101
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 98.6 bits (244), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTF 510
L + ++S+L+ + H AWPF EPV + P YYE+I+ PMDL+TMS+R+++ +YYV+
Sbjct: 13 QLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKN-RYYVSK 71
Query: 511 EMFVADVKRMFANARTYNSPDTIYYKCA 538
++F+AD++R+F N + YN P++ YYKCA
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCA 99
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+PMDL TM +RV+ +YY FVA
Sbjct: 77 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVA 135
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D+ ++F N R YN D+ +Y+CA
Sbjct: 136 DMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+PMDL TM +RV+ +YY FVA
Sbjct: 77 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVA 135
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D+ ++F N R YN D+ +Y+CA
Sbjct: 136 DMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+PMDL TM +RV+ +YY FVA
Sbjct: 18 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVA 76
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D+ ++F N R YN D+ +Y+CA
Sbjct: 77 DMTKIFDNCRYYNPSDSPFYQCA 99
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+PMDL TM +RV+ +YY FVA
Sbjct: 25 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVA 83
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D+ ++F N R YN D+ +Y+CA
Sbjct: 84 DMTKIFDNCRYYNPSDSPFYQCA 106
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+PMDL TM +RV+ +YY FVA
Sbjct: 18 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVA 76
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D+ +F N R YN D+ +Y+CA
Sbjct: 77 DMTAIFDNCRYYNPSDSPFYQCA 99
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
++ +L+S+ H AWPF EPVD D PDYY +IK+P DL T +RV+ +YY FVA
Sbjct: 77 LKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQ-RRYYEKLTEFVA 135
Query: 516 DVKRMFANARTYNSPDTIYYKCA 538
D ++F N R YN D+ +Y+CA
Sbjct: 136 DXTKIFDNCRYYNPSDSPFYQCA 158
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMF 513
A ++++L + +H AWPF +PV+ +VPDYY+ IK+PMDL TM ++ES + Y E F
Sbjct: 16 AAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK-YQKMEDF 74
Query: 514 VADVKRMFANARTYNSPDTIYYKCATR 540
+ D + +F N R YN +T YYK A R
Sbjct: 75 IYDARLVFNNCRMYNGENTSYYKYANR 101
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L +R +LK++ H AWPF++PVDA ++PDYY+IIK PMD+ T+ KR+E+ YY
Sbjct: 41 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYW 99
Query: 509 TFEMFVADVKRMFANARTYNSP 530
+ + D MF N YN P
Sbjct: 100 NAQECIQDFNTMFTNCYIYNKP 121
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 75.1 bits (183), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L +R +LK++ H AWPF++PVDA ++PDYY+IIK PMD+ T+ KR+E+ YY
Sbjct: 25 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYW 83
Query: 509 TFEMFVADVKRMFANARTYNSP 530
+ + D MF N YN P
Sbjct: 84 NAQECIQDFNTMFTNCYIYNKP 105
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L +R +LK++ H AWPF++PVDA ++PDYY+IIK PMD+ T+ KR+E+ YY
Sbjct: 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYW 79
Query: 509 TFEMFVADVKRMFANARTYNSP 530
+ + D MF N YN P
Sbjct: 80 NAQECIQDFNTMFTNCYIYNKP 101
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L +R +LK++ H AWPF++PVDA ++PDYY+IIK PMD+ T+ KR+E+ YY
Sbjct: 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYW 79
Query: 509 TFEMFVADVKRMFANARTYNSP 530
+ + D MF N YN P
Sbjct: 80 NAQECIQDFNTMFTNCYIYNKP 101
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA 515
M +L + H D+WPF EPVD P+YY+IIK PMD+ +M K++ Y T E FV
Sbjct: 21 MYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNG-GLYCTKEEFVN 79
Query: 516 DVKRMFANARTYNSPDTIYYK 536
D+K MF N R YN + Y K
Sbjct: 80 DMKTMFRNCRKYNGESSEYTK 100
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L + +LK + H +WPF+ PVDA +PDYY IIK+PMDL T+ KR+E+ +YY
Sbjct: 13 QLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLEN-KYYA 71
Query: 509 TFEMFVADVKRMFANARTYNSP 530
+ D MF+N YN P
Sbjct: 72 KASECIEDFNTMFSNCYLYNKP 93
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
LT +RS+L + D A F +PV ++VPDY + IK PMD TM KR+E+ Q Y
Sbjct: 14 LTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEA-QGYKNLH 72
Query: 512 MFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVF 549
F D + N YN+ DT++Y+ A R D +V
Sbjct: 73 EFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVL 110
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L R +LK++ H +WPF++PVDA +PDYY IIK PMDL T+ KR+E+ +YY
Sbjct: 14 QLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLEN-KYYE 72
Query: 509 TFEMFVADVKRMFANARTYN 528
+ D MF+N YN
Sbjct: 73 KASECIEDFNTMFSNCYLYN 92
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+WPF PV+ + VPDYY++I +PMDL T+ K + S+ Y + E F+ DV + AN+ Y
Sbjct: 187 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKY 245
Query: 528 NSPDTIYYKCATRHVDTINIVF 549
N P++ Y K A + +N+ +
Sbjct: 246 NGPESQYTKTAQ---EIVNVCY 264
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
L++ + S++ M D + +PF PV+A+ V DYY+II PMDL+T+ + V ++ Y + E
Sbjct: 48 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVR-KRLYPSRE 106
Query: 512 MFVADVKRMFANARTYNSP 530
F ++ + N+ TYN P
Sbjct: 107 EFREHLELIVKNSATYNGP 125
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+WPF PV+ + VPDYY++I +PMDL T+ K + S+ Y + E F+ DV + AN+ Y
Sbjct: 47 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKY 105
Query: 528 NSPDTIYYKCATRHVD 543
N P++ Y K A V+
Sbjct: 106 NGPESQYTKTAQEIVN 121
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+WPF PV+ + VPDYY++I +PMDL T+ K + S+ Y + E F+ DV + AN+ Y
Sbjct: 166 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKY 224
Query: 528 NSPDTIYYKCATRHVDTINIVF 549
N P++ Y K A + +N+ +
Sbjct: 225 NGPESQYTKTAQ---EIVNVCY 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
L++ + S++ M D + +PF PV+A+ V DYY+II PMDL+T+ + V ++ Y + E
Sbjct: 27 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVR-KRLYPSRE 85
Query: 512 MFVADVKRMFANARTYNSP 530
F ++ + N+ TYN P
Sbjct: 86 EFREHLELIVKNSATYNGP 104
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+WPF PV+ + VPDYY++I +PMDL T+ K + S+ Y + E F+ DV + AN+ Y
Sbjct: 154 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKY 212
Query: 528 NSPDTIYYKCATRHVD 543
N P++ Y K A V+
Sbjct: 213 NGPESQYTKTAQEIVN 228
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
L++ + S++ M D + +PF PV+A+ V DYY+II PMDL+T+ + V ++ Y + E
Sbjct: 15 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVR-KRLYPSRE 73
Query: 512 MFVADVKRMFANARTYNSP 530
F ++ + N+ TYN P
Sbjct: 74 EFREHLELIVKNSATYNGP 92
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 459 LLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVAD 516
++K++ H AWPF +PVDA ++PDY++IIK+PMD+ T+ KR+E+ Y+ E + D
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC-MQD 85
Query: 517 VKRMFANARTYNSP 530
MF N YN P
Sbjct: 86 FNTMFTNCYIYNKP 99
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 459 LLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVAD 516
++K++ H AWPF +PVDA ++PDY++IIK+PMD+ T+ KR+E+ Y+ E + D
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC-MQD 87
Query: 517 VKRMFANARTYNSP 530
MF N YN P
Sbjct: 88 FNTMFTNCYIYNKP 101
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L + ++K++ H AWPF++PVDA +PDY++IIK PMD+ T+ +R+E+ Y+
Sbjct: 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWA 91
Query: 509 TFEMFVADVKRMFANARTYNSP 530
E + D MF N YN P
Sbjct: 92 ASEC-MQDFNTMFTNCYIYNKP 112
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
L + ++K++ H AWPF++PVDA +PDY++IIK PMD+ T+ +R+E+ Y+
Sbjct: 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWA 91
Query: 509 TFEMFVADVKRMFANARTYNSP 530
E + D MF N YN P
Sbjct: 92 ASEC-MQDFNTMFTNCYIYNKP 112
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 459 LLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVAD 516
++K++ H AWPF +PVDA ++PDY++IIK+PMD+ T+ KR+E+ Y+ E + D
Sbjct: 25 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC-MQD 83
Query: 517 VKRMFANARTYNSP 530
MF N YN P
Sbjct: 84 FNTMFTNCYIYNKP 97
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+WPF PV+ + VPDYY++I +P+DL T+ K + S+ Y + E F+ DV + AN+ Y
Sbjct: 44 DSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKY 102
Query: 528 NSPDTIYYKCATRHVDTINIVF 549
N P++ Y K A + +NI +
Sbjct: 103 NGPESQYTKTAQ---EIVNICY 121
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYY 507
KH ++ LL H AWPF +PVDA + DY++IIK PMDL T+ +++E+ Y
Sbjct: 10 KHCNGILKELLSKKHAAY-AWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 68
Query: 508 VTFEMFVADVKRMFANARTYNSPD 531
E F ADV+ MF+N YN PD
Sbjct: 69 DAQE-FAADVRLMFSNCYKYNPPD 91
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYY 507
KH ++ LL H AWPF +PVDA + DY++IIK PMDL T+ +++E+ Y
Sbjct: 8 KHCNGILKELLSKKHA-AYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 508 VTFEMFVADVKRMFANARTYNSPD 531
E F ADV+ MF+N YN PD
Sbjct: 67 DAQE-FAADVRLMFSNCYKYNPPD 89
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMF 513
A +L M H DAWPF PV+ + VP Y ++IK PMD T+ +++ S Q Y E F
Sbjct: 13 ALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQ-YPNLETF 71
Query: 514 VADVKRMFANARTYNSPDT 532
DV+ +F N T+N D+
Sbjct: 72 ALDVRLVFDNCETFNEDDS 90
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYY 507
KH ++ LL H AWPF +PVDA + DY++IIK PMDL T+ +++E+ Y
Sbjct: 4 KHCNVILKELLSKKHAAY-AWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 508 VTFEMFVADVKRMFANARTYNSPD 531
E F ADV+ MF+N YN PD
Sbjct: 63 DAQE-FAADVRLMFSNCYKYNPPD 85
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 445 GASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESE 504
G+S +R L+ + + F EPV +VPDY + IK PMD TM + +E+
Sbjct: 1 GSSGSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAY 60
Query: 505 QYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATR 540
+ Y+ F+ F D + +N YN+ DTI+Y+ A R
Sbjct: 61 R-YLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR 95
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMF 513
A +L M H DAWPF PV+ + VP Y ++IK PMD T+ +++ S Q Y E F
Sbjct: 16 ALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQ-YPNLETF 74
Query: 514 VADVKRMFANARTYNSPDT 532
DV+ +F N T+N D+
Sbjct: 75 ALDVRLVFDNCETFNEDDS 93
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYY 507
KH + ++ +L H AWPF PVDA + +YY+++K+PMDL T+ ++++++Y
Sbjct: 17 KHCSEILKEMLAKKHLPY-AWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 508 VTFEMFVADVKRMFANARTYNSPD 531
+E F ADV+ MF N YN PD
Sbjct: 76 DAYE-FAADVRLMFMNCYKYNPPD 98
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYY 507
++ + +R +L H AWPF +PVDA ++ DY++IIK PMDL T+ ++++ + Y
Sbjct: 10 RYCDSILREMLSKKHAAY-AWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGRE-Y 67
Query: 508 VTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFV 550
+ F ADV+ MF+N YN PD A + D + F
Sbjct: 68 PDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 110
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 446 ASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVES 503
+ + ++ + +R +L H AWPF +PVDA ++ DY++IIK PMDL T+ ++++
Sbjct: 11 SEHLRYCDSILREMLSKKHAAY-AWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDG 69
Query: 504 EQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFV 550
+ Y + F ADV+ MF+N YN PD A + D + F
Sbjct: 70 RE-YPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFA 115
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 469 AWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526
AWPF +PVD A + DY +IIK PMD+ T+ ++ES +Y E F ADV+ MF+N
Sbjct: 30 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQE-FGADVRLMFSNCYK 88
Query: 527 YNSPDTIYYKCATRHVDTINIVF 549
YN PD A + D + F
Sbjct: 89 YNPPDHEVVAMARKLQDVFEMRF 111
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 459 LLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESE-QYYVTFEMFVADV 517
LL ++ H + F++PV VPDYY+IIK+PMDL T+ KR++ + Y E FVAD
Sbjct: 89 LLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147
Query: 518 KRMFANARTYNSPDT 532
+ +F N +N PD+
Sbjct: 148 RLIFQNCAEFNEPDS 162
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
A M +L ++ PF++PVD + +PDY++I+K+PMDL T+ +++++ QY ++
Sbjct: 15 ALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQ 74
Query: 512 MFVADVKRMFANARTYNSPDTIYYKCATR 540
+V DV MF NA YN + YK ++
Sbjct: 75 -YVDDVWLMFNNAWLYNRKTSRVYKFCSK 102
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 469 AWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526
AWPF +PVD A + DY +IIK PMD+ T+ ++E+ +Y E F ADV+ MF+N
Sbjct: 22 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQE-FGADVRLMFSNCYK 80
Query: 527 YNSPDTIYYKCATRHVDTINIVF 549
YN PD A + D + F
Sbjct: 81 YNPPDHEVVAMARKLQDVFEMRF 103
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
A M +L ++ PF++PVD + +PDY++I+K+PMDL T+ +++++ QY ++
Sbjct: 17 ALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQ 76
Query: 512 MFVADVKRMFANARTYNSPDTIYYKCATR 540
+V DV MF NA YN + YK ++
Sbjct: 77 -YVDDVWLMFNNAWLYNRKTSRVYKFCSK 104
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 439 LTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMS 498
L+A + Q+ L F+R L + A+P + + P Y IIK PMD TM
Sbjct: 5 LSAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI----APGYSMIIKHPMDFGTMK 60
Query: 499 KRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATR 540
++ + +Y E F AD K M NA TYN PDT+YYK A +
Sbjct: 61 DKIVANEYKSVTE-FKADFKLMCDNAMTYNRPDTVYYKLAKK 101
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 459 LLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESE-QYYVTFEMFVADV 517
LL ++ H + F++PV VPDYY+IIK+PMDL T+ KR++ + Y E FVAD
Sbjct: 28 LLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86
Query: 518 KRMFANARTYNSPDT 532
+ +F N +N PD+
Sbjct: 87 RLIFQNCAEFNEPDS 101
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 469 AWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526
AWPF +PVD A + DY +IIK PMD+ T+ ++E+ +Y E F ADV+ MF+N
Sbjct: 41 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQE-FGADVRLMFSNCYK 99
Query: 527 YNSPDTIYYKCATRHVDTINIVF 549
YN PD A + D + F
Sbjct: 100 YNPPDHEVVAMARKLQDVFEMRF 122
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 469 AWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526
AWPF +PVD A + DY +IIK PMD+ T+ ++E+ +Y E F ADV+ MF+N
Sbjct: 43 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQE-FGADVRLMFSNCYK 101
Query: 527 YNSPDTIYYKCATRHVDTINIVF 549
YN PD A + D + F
Sbjct: 102 YNPPDHEVVAMARKLQDVFEMRF 124
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 454 AFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFE 511
A M +L ++ PF++PVD + +PDY++I+K PMDL T+ +++++ QY ++
Sbjct: 20 ALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQ 79
Query: 512 MFVADVKRMFANARTYNSPDTIYYKCATR 540
+V D+ MF NA YN + YK ++
Sbjct: 80 -YVDDIWLMFNNAWLYNRKTSRVYKYCSK 107
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 439 LTAATDGASNQKHLTAFMRSLLKSMHDHVD-AWPFKEPVDARDVPDYYEIIKDPMDLRTM 497
L AT+ NQ L A S K++ D V + PF E VD ++P+YYEI+ PM L +
Sbjct: 203 LVDATEKKINQALLGA---SSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIV 259
Query: 498 SKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIV 548
+ +E QY ++ F+ D+ +F NA +N P + YK AT + N +
Sbjct: 260 KQNLEIGQYSKIYD-FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYL 309
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDV--PDYYEIIKDPMDLRTMSKRVESEQYYV 508
L + + K++ H AWPF++PVDA + PDY++IIK P D T+ +R+E+ Y+
Sbjct: 6 QLQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWA 65
Query: 509 TFEMFVADVKRMFANARTYNSP 530
E D F N YN P
Sbjct: 66 ASEC-XQDFNTXFTNCYIYNKP 86
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 442 ATDGASNQ--KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDV--PDYYEIIKDPMDLRTM 497
+ G+S + L + + K++ H AWPF++PVDA + PDY++IIK P D T+
Sbjct: 1 GSSGSSGRVTNQLQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTI 60
Query: 498 SKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530
+R+E+ Y+ E D F N YN P
Sbjct: 61 KRRLENNYYWAASEC-XQDFNTXFTNCYIYNKP 92
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 439 LTAATDGASNQKHLTAFMRSLLKSMHDHVD-AWPFKEPVDARDVPDYYEIIKDPMDLRTM 497
L AT+ NQ L A S K++ D V + PF E VD ++P+YYEI+ PM L +
Sbjct: 188 LVDATEKKINQALLGA---SSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIV 244
Query: 498 SKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTIN 546
+ +E QY ++ F+ D+ +F NA +N P + YK AT + N
Sbjct: 245 KQNLEIGQYSKIYD-FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 292
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 420 GLREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR 479
G E + D HS+ + TA +Q+ LL ++ H + F+EPV A
Sbjct: 55 GKPEVEYDCDNLQHSK-KGKTAQGLSPVDQRKC----ERLLLYLYCHELSIEFQEPVPAS 109
Query: 480 DVPDYYEIIKDPMDLRTMSKRVESE--QYYVTFEMFVADVKRMFANARTYN 528
+P+YY+IIK PMDL T+ K+++ + Q+Y + FVADV+ +F N +N
Sbjct: 110 -IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 439 LTAATDGASNQKHLTAFMRSLLKSMHDHVD-AWPFKEPVDARDVPDYYEIIKDPMDLRTM 497
L AT+ NQ L A S K++ D V + PF E VD ++P+YYEI+ P L +
Sbjct: 147 LVDATEKKINQALLGA---SSPKNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIV 203
Query: 498 SKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTIN 546
+ +E QY ++ F+ D +F NA +N P + YK AT + N
Sbjct: 204 KQNLEIGQYSKIYD-FIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFN 251
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 439 LTAATDGASNQKHLTAFMRSLLKSMHDHVD-AWPFKEPVDARDVPDYYEIIKDPMDLRTM 497
L AT+ NQ L A S K++ D V + PF E VD ++P+YYEI+ P L +
Sbjct: 153 LVDATEKKINQALLGA---SSPKNLDDKVKLSEPFXELVDKDELPEYYEIVHSPXALSIV 209
Query: 498 SKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTIN 546
+ +E QY ++ F+ D +F NA +N P + YK AT + N
Sbjct: 210 KQNLEIGQYSKIYD-FIIDXLLVFQNAHIFNDPSALIYKDATTLTNYFN 257
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 469 AWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526
AWPF +PVD A + DY +IIK P D T+ ++ES +Y E F ADV+ F+N
Sbjct: 28 AWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQE-FGADVRLXFSNCYK 86
Query: 527 YNSPD 531
YN PD
Sbjct: 87 YNPPD 91
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYV 508
Q L + L++ + + F PV P Y IIK PMD TM +++++ Y
Sbjct: 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQ- 64
Query: 509 TFEMFVADVKRMFANARTYNSPDTIYYKCATR 540
+ E + K M NA YN P+TIYYK A +
Sbjct: 65 SIEELKDNFKLMCTNAMIYNKPETIYYKAAKK 96
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
R+ PDYYE++ P+DL + ++++ E+Y + AD + +F NA++Y PD+ YK A
Sbjct: 39 RNQPDYYEVVSQPIDLMKIQQKLKMEEYD-DVNLLTADFQLLFNNAKSYYKPDSPEYKAA 97
Query: 539 TRHVD 543
+ D
Sbjct: 98 CKLWD 102
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+ PF++PVD + PDY +II PMD T+ + +++ Y E F D++ +F+NA+ Y
Sbjct: 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLE-FCKDIRLIFSNAKAY 85
Query: 528 --NSPDTIY 534
N IY
Sbjct: 86 TPNKRSKIY 94
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVT 509
+ L F+R + K + F +PVD +V DY E+IK+PMDL T+ +++ Y+T
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHN-YLT 69
Query: 510 FEMFVADVKRMFANARTYNSPD 531
+ F+ D+ + +NA YN PD
Sbjct: 70 AKDFLKDIDLICSNALEYN-PD 90
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 468 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
D+ PF++PVD + PDY +II PMD T+ + +E+ Y E+ DV+ +F+N++ Y
Sbjct: 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMEL-CKDVRLIFSNSKAY 96
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 482 PDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
PDYY IIK+P+DL+T+++R+++ Y M D+ + NA+TYN P + +K A
Sbjct: 43 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAM-AKDIDLLAKNAKTYNEPGSQVFKDA 98
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 482 PDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
PDYY IIK+P+DL+T+++R+++ Y M D+ + NA+TYN P + +K A
Sbjct: 46 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAM-AKDIDLLAKNAKTYNEPGSQVFKDA 101
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 482 PDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
PDYY IIK+P+DL+T+++R+++ Y M D+ + NA+TYN P + +K A
Sbjct: 45 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAM-AKDIDLLAKNAKTYNEPGSQVFKDA 100
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 469 AWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528
A PF + PDYY+ IK P+ L+ + ++++++Y T + D+ MF NA+ YN
Sbjct: 41 AEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYE-TLDHLECDLNLMFENAKRYN 99
Query: 529 SPDTIYYK 536
P++ YK
Sbjct: 100 VPNSAIYK 107
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
+D PDYY+II +PMDL+ + + +++ Y E + D+K MF NAR YN + Y A
Sbjct: 59 KDYPDYYKIILEPMDLKIIEHNIRNDK-YAGEEGMIEDMKLMFRNARHYNEEGSQVYNDA 117
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVT 509
+ L F+R++ + F +PVD +VPDY +IK PMDL ++ +++ + Y+T
Sbjct: 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHK-YLT 67
Query: 510 FEMFVADVKRMFANARTYNSPD 531
+ ++ D+ + +NA YN PD
Sbjct: 68 VKDYLRDIDLICSNALEYN-PD 88
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 459 LLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVAD 516
L+ S+ + F++ VDA+ + PDYY++IK+P + +++ QY E FV D
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSE-FVKD 87
Query: 517 VKRMFANARTYNSPDTI 533
V+ +F N YN+ +++
Sbjct: 88 VQLIFDNCSLYNTSNSV 104
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 480 DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
++PDYY IK PMD+ + + + +Y + V D MF NA TYN P+++ YK A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQ-DIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 480 DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCA 538
++PDYY IK PMD+ + + + +Y + V D MF NA TYN P+++ YK A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQ-DIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 483 DYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527
DYYE I DP+DL T+ K++ + YY T E F AD+ ++F NA Y
Sbjct: 47 DYYEKISDPLDLITIEKQILT-GYYKTVEAFDADMLKVFRNAEKY 90
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVT 509
+ L F+R + K + F +PV DY E+IK+PMDL T+ +++ Y+T
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHN-YLT 64
Query: 510 FEMFVADVKRMFANARTYNSPD 531
+ F+ D+ + +NA YN PD
Sbjct: 65 AKDFLKDIDLICSNALEYN-PD 85
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYK 536
+++P+YYE+I+ P+D + + +R+ + +Y + DV + NA+T+N ++ Y+
Sbjct: 42 KELPEYYELIRKPVDFKKIKERIRNHKYR-SLNDLEKDVMLLCQNAQTFNLEGSLIYE 98
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYK 536
+++P+YYE+I+ P+D + + +R+ + +Y + DV + NA+T+N ++ Y+
Sbjct: 47 KELPEYYELIRKPVDFKKIKERIRNHKYR-SLNDLEKDVMLLCQNAQTFNLEGSLIYE 103
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYK 536
+++P+YYE+I+ P+D + + +R+ + +Y + DV + NA+T+N ++ Y+
Sbjct: 46 KELPEYYELIRKPVDFKKIKERIRNHKYR-SLNDLEKDVMLLCQNAQTFNLEGSLIYE 102
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 479 RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528
+++P+YYE+I+ P+D + + +R+ + +Y ++ DV + NA+T+N
Sbjct: 47 KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDL-EKDVMLLCHNAQTFN 95
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD 312
S S++ GN+ G + + GEIA A++ Q GYG RL+ H+ AR +
Sbjct: 346 SEFSILEHDGNLY-GCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI- 403
Query: 313 GLTHFLTYADNNAVGYFIKQGF 334
G++ + N +F ++GF
Sbjct: 404 GISRLFALSTNTGE-WFAERGF 424
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD 312
S S++ GN+ G + + GEIA A++ Q GYG RL+ H+ AR +
Sbjct: 346 SEFSILEHDGNLY-GCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI- 403
Query: 313 GLTHFLTYADNNAVGYFIKQGF 334
G++ + N +F ++GF
Sbjct: 404 GISRLFALSTNTGE-WFAERGF 424
>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
pdb|1BTM|B Chain B, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
Length = 252
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 421 LREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLL 460
L++ G T GHS R + A TD N+K L AF R L+
Sbjct: 82 LKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
pdb|2BTM|B Chain B, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
Length = 252
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 421 LREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLL 460
L++ G T GHS R + A TD N+K L AF R L+
Sbjct: 82 LKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
>pdb|3EK2|A Chain A, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|B Chain B, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|C Chain C, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|D Chain D, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
Length = 271
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 276 SQKFG-EIAF-CAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333
+ +FG E+ F C + D Q+ L LK H +DGL H + +A A+ G
Sbjct: 60 AAEFGSELVFPCDVADDAQIDA----LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDG 115
Query: 334 FTKE 337
T+E
Sbjct: 116 LTRE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,127,397
Number of Sequences: 62578
Number of extensions: 533152
Number of successful extensions: 1307
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 96
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)