Query 008716
Match_columns 556
No_of_seqs 420 out of 1740
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 15:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1472 Histone acetyltransfer 100.0 3.8E-64 8.3E-69 555.3 8.8 345 194-552 355-706 (720)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 8.8E-27 1.9E-31 206.9 12.4 103 449-552 3-107 (107)
3 cd05495 Bromo_cbp_like Bromodo 99.9 2.8E-26 6.1E-31 203.9 12.9 104 450-554 2-108 (108)
4 cd05505 Bromo_WSTF_like Bromod 99.9 2.1E-26 4.5E-31 201.2 11.0 95 454-549 3-97 (97)
5 cd05496 Bromo_WDR9_II Bromodom 99.9 4.4E-26 9.5E-31 206.1 12.2 104 449-553 3-107 (119)
6 cd05507 Bromo_brd8_like Bromod 99.9 1.3E-25 2.8E-30 198.3 12.3 102 450-552 2-103 (104)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 1.6E-25 3.4E-30 196.5 11.5 97 450-548 2-98 (99)
8 cd05502 Bromo_tif1_like Bromod 99.9 3.7E-25 8E-30 196.6 13.1 104 451-555 4-109 (109)
9 cd05510 Bromo_SPT7_like Bromod 99.9 2.9E-25 6.3E-30 198.8 12.4 104 448-552 4-109 (112)
10 cd05503 Bromo_BAZ2A_B_like Bro 99.9 3.1E-25 6.8E-30 193.3 10.9 95 454-549 3-97 (97)
11 cd05504 Bromo_Acf1_like Bromod 99.9 5E-25 1.1E-29 198.0 12.4 104 449-553 10-113 (115)
12 cd05509 Bromo_gcn5_like Bromod 99.9 5.8E-25 1.2E-29 192.3 11.9 99 452-551 2-100 (101)
13 cd05528 Bromo_AAA Bromodomain; 99.9 2.1E-24 4.5E-29 193.3 12.3 103 451-554 3-109 (112)
14 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.2E-24 4.8E-29 191.4 10.7 100 452-552 2-107 (107)
15 cd05506 Bromo_plant1 Bromodoma 99.9 3.2E-24 7E-29 186.8 11.0 96 453-549 2-99 (99)
16 cd05501 Bromo_SP100C_like Brom 99.9 5.5E-24 1.2E-28 187.7 12.5 95 455-553 6-100 (102)
17 cd05512 Bromo_brd1_like Bromod 99.9 3.6E-24 7.7E-29 187.4 11.0 93 452-545 2-94 (98)
18 cd05513 Bromo_brd7_like Bromod 99.9 3.9E-24 8.4E-29 187.4 11.0 94 452-546 2-95 (98)
19 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.7E-24 1.2E-28 186.6 11.1 95 454-549 3-102 (102)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 9.3E-24 2E-28 185.8 11.9 99 450-549 3-103 (103)
21 cd05511 Bromo_TFIID Bromodomai 99.9 8.8E-24 1.9E-28 189.1 11.4 99 453-552 2-100 (112)
22 cd05498 Bromo_Brdt_II_like Bro 99.9 9.4E-24 2E-28 185.0 11.2 96 453-549 2-102 (102)
23 KOG1474 Transcription initiati 99.9 1.4E-23 3.1E-28 235.4 11.8 106 448-554 219-326 (640)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 2.5E-23 5.5E-28 183.1 10.2 97 452-549 1-103 (103)
25 cd05515 Bromo_polybromo_V Brom 99.9 4.5E-23 9.7E-28 182.4 10.3 96 454-550 3-104 (105)
26 smart00297 BROMO bromo domain. 99.9 1.1E-22 2.4E-27 177.6 12.2 103 448-551 4-106 (107)
27 cd05525 Bromo_ASH1 Bromodomain 99.9 1.6E-22 3.4E-27 179.5 11.0 96 452-548 3-104 (106)
28 cd05524 Bromo_polybromo_I Brom 99.9 1.7E-22 3.8E-27 181.0 11.3 102 453-555 4-111 (113)
29 cd05520 Bromo_polybromo_III Br 99.9 1.4E-22 3.1E-27 178.8 10.2 81 467-548 22-102 (103)
30 cd05517 Bromo_polybromo_II Bro 99.9 1.4E-22 3E-27 178.9 9.7 94 453-547 2-101 (103)
31 cd05529 Bromo_WDR9_I_like Brom 99.9 3.8E-22 8.3E-27 182.5 12.7 101 450-551 23-127 (128)
32 cd05518 Bromo_polybromo_IV Bro 99.9 3.8E-22 8.3E-27 176.2 10.9 98 450-548 3-102 (103)
33 COG5076 Transcription factor i 99.9 2.9E-22 6.2E-27 211.8 8.5 224 204-555 19-251 (371)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.9 3.2E-21 7E-26 170.4 10.7 94 454-548 4-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 4.6E-21 9.9E-26 170.2 11.0 97 452-551 2-104 (106)
36 cd04369 Bromodomain Bromodomai 99.8 8.9E-21 1.9E-25 160.1 10.0 96 453-549 2-99 (99)
37 PF00439 Bromodomain: Bromodom 99.8 1.2E-20 2.7E-25 157.8 9.2 84 456-540 1-84 (84)
38 cd05492 Bromo_ZMYND11 Bromodom 99.8 8.7E-20 1.9E-24 162.9 11.5 100 454-554 3-108 (109)
39 cd05526 Bromo_polybromo_VI Bro 99.7 5.6E-17 1.2E-21 145.0 10.4 98 451-551 3-106 (110)
40 KOG1245 Chromatin remodeling c 99.7 1.5E-17 3.2E-22 198.5 8.0 101 452-554 1301-1402(1404)
41 PRK07757 acetyltransferase; Pr 99.5 1.7E-13 3.7E-18 125.0 14.1 107 255-377 42-150 (152)
42 COG1246 ArgA N-acetylglutamate 99.4 1.4E-12 3.1E-17 122.5 8.8 129 228-374 16-148 (153)
43 PF13508 Acetyltransf_7: Acety 99.4 2.2E-12 4.8E-17 106.2 8.2 77 253-335 2-78 (79)
44 PF13673 Acetyltransf_10: Acet 99.3 5.8E-11 1.2E-15 102.7 13.3 88 240-334 30-117 (117)
45 PRK10146 aminoalkylphosphonic 99.3 4.7E-11 1E-15 107.1 12.4 91 245-336 38-135 (144)
46 PF00583 Acetyltransf_1: Acety 99.3 2.7E-11 5.9E-16 98.7 9.3 76 259-335 1-83 (83)
47 PTZ00330 acetyltransferase; Pr 99.2 1.9E-10 4.1E-15 103.5 14.1 123 208-336 6-138 (147)
48 TIGR01575 rimI ribosomal-prote 99.2 4.2E-10 9.2E-15 98.1 12.8 93 241-336 18-113 (131)
49 PRK03624 putative acetyltransf 99.2 5E-10 1.1E-14 98.4 12.6 120 209-336 3-127 (140)
50 TIGR03827 GNAT_ablB putative b 99.1 6.4E-10 1.4E-14 112.5 14.9 129 209-342 116-248 (266)
51 cd05494 Bromodomain_1 Bromodom 99.1 2E-11 4.4E-16 110.0 3.5 77 454-530 6-90 (114)
52 PRK12308 bifunctional arginino 99.1 2.4E-10 5.3E-15 128.6 12.7 107 254-374 503-609 (614)
53 PRK07922 N-acetylglutamate syn 99.1 4E-10 8.7E-15 106.8 12.0 80 253-336 44-124 (169)
54 PF13527 Acetyltransf_9: Acety 99.1 8.9E-10 1.9E-14 97.2 12.6 80 253-335 40-125 (127)
55 PRK10140 putative acetyltransf 99.1 7.6E-10 1.7E-14 100.8 12.5 135 207-343 2-145 (162)
56 COG0456 RimI Acetyltransferase 99.1 5.9E-10 1.3E-14 103.1 11.2 96 240-336 41-151 (177)
57 TIGR01890 N-Ac-Glu-synth amino 99.1 4.4E-10 9.6E-15 121.3 11.5 101 242-348 314-416 (429)
58 PRK10314 putative acyltransfer 99.1 3.7E-10 8.1E-15 105.6 8.8 113 219-336 14-131 (153)
59 PHA00673 acetyltransferase dom 99.1 1.6E-09 3.5E-14 102.6 12.8 93 243-336 44-143 (154)
60 PRK13688 hypothetical protein; 99.0 1.6E-09 3.5E-14 102.4 11.2 105 226-336 14-130 (156)
61 KOG0955 PHD finger protein BR1 99.0 4.4E-10 9.5E-15 131.2 8.0 99 452-551 566-664 (1051)
62 PLN02825 amino-acid N-acetyltr 99.0 2E-09 4.4E-14 118.9 12.3 100 238-343 395-496 (515)
63 TIGR02382 wecD_rffC TDP-D-fuco 99.0 1.2E-09 2.5E-14 104.9 8.9 75 260-336 105-182 (191)
64 PLN02706 glucosamine 6-phospha 99.0 3.4E-09 7.4E-14 96.4 11.5 80 256-336 55-141 (150)
65 KOG0008 Transcription initiati 99.0 3.1E-10 6.8E-15 132.4 5.4 97 454-551 1385-1481(1563)
66 cd05491 Bromo_TBP7_like Bromod 99.0 4.3E-10 9.4E-15 101.8 4.6 42 490-532 63-104 (119)
67 PRK09491 rimI ribosomal-protei 99.0 2.9E-09 6.2E-14 96.7 10.1 100 256-360 42-144 (146)
68 PF13420 Acetyltransf_4: Acety 99.0 3.1E-09 6.8E-14 96.6 10.0 97 243-341 39-141 (155)
69 PRK10514 putative acetyltransf 99.0 9.3E-09 2E-13 92.7 12.9 74 254-336 49-123 (145)
70 PRK05279 N-acetylglutamate syn 98.9 4E-09 8.8E-14 114.1 11.2 90 255-346 335-426 (441)
71 cd02169 Citrate_lyase_ligase C 98.9 3.4E-09 7.4E-14 109.9 8.7 72 258-336 10-81 (297)
72 PRK09831 putative acyltransfer 98.9 4.9E-09 1.1E-13 95.9 8.5 75 253-339 52-126 (147)
73 PRK10975 TDP-fucosamine acetyl 98.9 1.3E-08 2.8E-13 97.6 11.0 80 255-336 102-185 (194)
74 TIGR02406 ectoine_EctA L-2,4-d 98.9 1.3E-08 2.7E-13 95.2 10.0 81 255-336 40-125 (157)
75 TIGR03585 PseH pseudaminic aci 98.9 3.6E-08 7.8E-13 89.6 12.7 93 242-336 39-135 (156)
76 PRK15130 spermidine N1-acetylt 98.9 2.3E-08 4.9E-13 94.6 11.8 91 246-337 49-143 (186)
77 TIGR00124 cit_ly_ligase [citra 98.8 1.8E-08 3.8E-13 106.2 11.3 91 254-362 31-121 (332)
78 PHA01807 hypothetical protein 98.8 4.1E-08 8.8E-13 92.8 12.2 109 223-332 14-136 (153)
79 KOG1827 Chromatin remodeling c 98.8 7.9E-09 1.7E-13 115.2 8.0 100 449-549 54-155 (629)
80 PF13523 Acetyltransf_8: Acety 98.8 1.1E-07 2.3E-12 86.9 13.3 126 211-336 1-138 (152)
81 KOG1472 Histone acetyltransfer 98.8 6E-09 1.3E-13 117.7 5.8 90 447-544 289-378 (720)
82 TIGR03448 mycothiol_MshD mycot 98.8 7E-08 1.5E-12 97.5 12.6 112 220-336 8-125 (292)
83 PRK10151 ribosomal-protein-L7/ 98.7 2.4E-07 5.3E-12 87.0 14.7 135 207-342 9-158 (179)
84 KOG3139 N-acetyltransferase [G 98.7 1.3E-07 2.9E-12 89.7 12.6 118 228-346 29-153 (165)
85 TIGR01686 FkbH FkbH-like domai 98.7 1.5E-07 3.2E-12 98.1 13.9 122 209-336 187-318 (320)
86 PRK10562 putative acetyltransf 98.7 8E-08 1.7E-12 87.4 9.9 77 252-336 46-122 (145)
87 KOG0008 Transcription initiati 98.7 2.1E-08 4.6E-13 117.6 7.1 98 452-550 1262-1359(1563)
88 PRK10809 ribosomal-protein-S5- 98.7 2.9E-07 6.3E-12 87.7 13.7 82 254-336 75-163 (194)
89 TIGR03103 trio_acet_GNAT GNAT- 98.7 1.5E-07 3.2E-12 105.1 13.0 109 226-336 94-214 (547)
90 COG5076 Transcription factor i 98.7 3.7E-09 8E-14 112.4 -0.3 222 312-552 136-363 (371)
91 KOG0386 Chromatin remodeling c 98.6 5.6E-08 1.2E-12 111.9 6.8 99 454-553 1027-1131(1157)
92 TIGR03448 mycothiol_MshD mycot 98.6 1.6E-07 3.6E-12 94.8 9.2 80 256-336 200-285 (292)
93 KOG3138 Predicted N-acetyltran 98.5 2E-07 4.4E-12 90.9 7.5 121 208-336 16-149 (187)
94 PRK01346 hypothetical protein; 98.5 1.2E-06 2.7E-11 93.4 14.1 81 253-336 46-133 (411)
95 COG3153 Predicted acetyltransf 98.5 7E-07 1.5E-11 86.1 9.5 80 253-336 45-128 (171)
96 COG1247 Sortase and related ac 98.4 1.7E-06 3.7E-11 83.3 11.3 105 255-363 53-165 (169)
97 KOG3396 Glucosamine-phosphate 98.4 1.6E-06 3.5E-11 80.5 9.9 123 208-336 6-141 (150)
98 KOG1474 Transcription initiati 98.3 1.2E-07 2.6E-12 107.6 0.8 91 462-553 3-95 (640)
99 KOG2488 Acetyltransferase (GNA 98.3 3.5E-06 7.6E-11 82.1 9.6 89 254-342 92-185 (202)
100 PF08445 FR47: FR47-like prote 98.3 3.1E-06 6.7E-11 72.3 8.1 56 280-336 22-79 (86)
101 cd04301 NAT_SF N-Acyltransfera 98.2 7.3E-06 1.6E-10 60.9 8.5 62 257-319 2-64 (65)
102 KOG3216 Diamine acetyltransfer 98.2 3.4E-05 7.5E-10 73.0 14.3 129 207-336 2-143 (163)
103 PF14542 Acetyltransf_CG: GCN5 98.2 7.1E-06 1.5E-10 69.2 8.8 71 257-332 2-72 (78)
104 PF13302 Acetyltransf_3: Acety 98.2 8.7E-06 1.9E-10 72.3 9.6 80 255-335 57-142 (142)
105 KOG1828 IRF-2-binding protein 98.2 3.3E-07 7.3E-12 96.8 -0.4 97 457-554 25-121 (418)
106 TIGR01211 ELP3 histone acetylt 98.2 5.3E-06 1.2E-10 92.3 9.0 81 255-336 412-513 (522)
107 KOG3397 Acetyltransferases [Ge 98.1 1E-05 2.2E-10 78.1 7.7 110 225-336 24-138 (225)
108 PF13718 GNAT_acetyltr_2: GNAT 98.0 3.5E-05 7.6E-10 75.9 10.4 102 243-352 16-182 (196)
109 KOG1828 IRF-2-binding protein 97.9 7.6E-06 1.6E-10 86.7 4.2 88 454-543 211-298 (418)
110 PF12746 GNAT_acetyltran: GNAT 97.7 0.0003 6.6E-09 72.3 12.2 80 254-336 165-244 (265)
111 COG3393 Predicted acetyltransf 97.7 0.00022 4.7E-09 73.0 10.3 82 253-336 176-259 (268)
112 COG1670 RimL Acetyltransferase 97.7 0.00025 5.3E-09 65.0 9.3 79 263-342 77-161 (187)
113 KOG3234 Acetyltransferase, (GN 97.6 0.00013 2.7E-09 69.6 7.0 74 262-336 50-128 (173)
114 KOG3235 Subunit of the major N 97.6 0.00015 3.2E-09 69.3 6.1 108 226-336 12-132 (193)
115 COG2153 ElaA Predicted acyltra 97.5 0.00022 4.8E-09 67.2 6.7 80 255-336 50-133 (155)
116 COG0454 WecD Histone acetyltra 97.4 0.00017 3.7E-09 56.6 3.7 44 285-334 87-130 (156)
117 PF13480 Acetyltransf_6: Acety 97.4 0.0095 2.1E-07 52.7 15.2 113 200-317 11-131 (142)
118 COG1444 Predicted P-loop ATPas 97.4 0.001 2.3E-08 76.7 11.0 127 207-336 423-588 (758)
119 PF12568 DUF3749: Acetyltransf 97.4 0.0022 4.9E-08 59.3 11.1 102 225-336 14-122 (128)
120 COG3053 CitC Citrate lyase syn 97.3 0.001 2.2E-08 69.1 9.2 75 255-336 37-112 (352)
121 COG3981 Predicted acetyltransf 97.3 0.00053 1.2E-08 66.2 6.4 104 220-334 43-154 (174)
122 KOG4135 Predicted phosphogluco 96.9 0.0035 7.5E-08 59.6 7.4 104 203-336 58-167 (185)
123 COG2388 Predicted acetyltransf 96.6 0.0061 1.3E-07 54.2 7.0 67 252-320 13-79 (99)
124 COG4552 Eis Predicted acetyltr 96.4 0.011 2.4E-07 62.9 8.3 109 223-336 10-124 (389)
125 PRK13834 putative autoinducer 95.3 0.3 6.6E-06 48.5 12.9 143 210-362 2-181 (207)
126 TIGR03694 exosort_acyl putativ 95.3 0.19 4.1E-06 51.0 11.6 134 219-361 16-212 (241)
127 PF00765 Autoind_synth: Autoin 95.2 0.19 4.1E-06 49.1 10.9 125 230-362 18-171 (182)
128 cd05493 Bromo_ALL-1 Bromodomai 95.2 0.035 7.5E-07 51.8 5.4 63 491-554 59-121 (131)
129 KOG4144 Arylalkylamine N-acety 95.2 0.014 3E-07 55.9 2.8 57 280-336 102-158 (190)
130 COG1243 ELP3 Histone acetyltra 95.0 0.023 5.1E-07 62.4 4.1 47 289-336 460-506 (515)
131 PF06852 DUF1248: Protein of u 94.2 1.2 2.5E-05 43.9 13.3 120 211-336 4-134 (181)
132 COG5628 Predicted acetyltransf 93.8 0.25 5.5E-06 45.7 7.5 83 251-339 34-123 (143)
133 cd04264 DUF619-NAGS DUF619 dom 93.6 0.31 6.6E-06 43.4 7.5 33 277-309 32-64 (99)
134 cd04265 DUF619-NAGS-U DUF619 d 92.1 0.46 1E-05 42.3 6.6 32 278-309 33-64 (99)
135 COG3882 FkbH Predicted enzyme 92.1 0.67 1.5E-05 51.7 9.0 125 208-335 411-546 (574)
136 PF01233 NMT: Myristoyl-CoA:pr 92.0 0.61 1.3E-05 45.1 7.6 77 241-318 61-148 (162)
137 TIGR03019 pepcterm_femAB FemAB 91.8 3.2 7E-05 43.4 13.6 129 200-336 144-278 (330)
138 KOG2535 RNA polymerase II elon 91.7 0.16 3.5E-06 54.3 3.6 48 289-336 497-544 (554)
139 PF08444 Gly_acyl_tr_C: Aralky 90.1 0.62 1.3E-05 40.9 5.2 68 262-335 7-76 (89)
140 TIGR03827 GNAT_ablB putative b 86.8 2.2 4.7E-05 43.5 7.5 62 294-365 20-84 (266)
141 KOG0644 Uncharacterized conser 85.7 0.49 1.1E-05 55.4 2.4 61 488-549 1050-1110(1113)
142 PLN03238 probable histone acet 85.0 7.3 0.00016 41.0 10.3 104 188-310 75-186 (290)
143 PF01853 MOZ_SAS: MOZ/SAS fami 84.5 7.9 0.00017 38.4 9.8 61 249-310 46-111 (188)
144 COG3916 LasI N-acyl-L-homoseri 83.7 12 0.00027 37.7 10.9 121 230-362 25-179 (209)
145 PF13880 Acetyltransf_13: ESCO 83.3 1.5 3.2E-05 36.9 3.6 29 280-308 6-34 (70)
146 PTZ00064 histone acetyltransfe 82.7 6.1 0.00013 44.5 9.0 62 248-310 349-415 (552)
147 PF05301 Mec-17: Touch recepto 82.2 5 0.00011 37.1 6.9 46 263-308 18-75 (120)
148 COG3375 Uncharacterized conser 81.9 8.5 0.00018 39.4 9.0 124 219-353 11-142 (266)
149 COG3818 Predicted acetyltransf 79.6 5.6 0.00012 37.6 6.4 106 225-336 20-145 (167)
150 PLN03239 histone acetyltransfe 79.2 12 0.00026 40.4 9.6 62 248-310 178-244 (351)
151 PLN00104 MYST -like histone ac 78.7 6.8 0.00015 43.6 7.8 62 248-310 271-337 (450)
152 KOG2747 Histone acetyltransfer 72.3 9.5 0.00021 41.8 6.8 99 202-310 190-291 (396)
153 PF04768 DUF619: Protein of un 66.2 44 0.00096 32.5 9.3 83 241-329 51-134 (170)
154 PF09026 CENP-B_dimeris: Centr 64.6 2.2 4.7E-05 38.1 0.0 11 109-119 40-50 (101)
155 KOG2036 Predicted P-loop ATPas 63.6 5.9 0.00013 46.3 3.1 31 280-310 615-645 (1011)
156 KOG0732 AAA+-type ATPase conta 63.1 4.1 9E-05 49.5 1.9 62 469-531 533-601 (1080)
157 KOG2779 N-myristoyl transferas 60.2 15 0.00033 39.8 5.3 61 254-315 136-202 (421)
158 COG5027 SAS2 Histone acetyltra 58.7 13 0.00028 40.3 4.4 88 204-303 192-286 (395)
159 PF09026 CENP-B_dimeris: Centr 57.0 3.8 8.3E-05 36.5 0.2 12 84-95 9-20 (101)
160 cd03173 DUF619-like DUF619 dom 55.3 54 0.0012 29.3 7.2 32 277-308 31-62 (98)
161 PF14372 DUF4413: Domain of un 52.3 54 0.0012 28.9 6.7 49 504-552 3-51 (101)
162 PF13444 Acetyltransf_5: Acety 50.6 26 0.00055 30.5 4.4 57 245-301 21-100 (101)
163 KOG4264 Nucleo-cytoplasmic pro 49.2 17 0.00037 41.1 3.7 22 235-256 220-241 (694)
164 PRK01305 arginyl-tRNA-protein 48.5 3.3E+02 0.0071 28.1 15.8 113 202-317 88-204 (240)
165 PF04377 ATE_C: Arginine-tRNA- 47.2 1.8E+02 0.004 27.1 9.6 73 242-317 25-99 (128)
166 KOG0644 Uncharacterized conser 44.9 15 0.00032 43.8 2.4 68 473-542 87-184 (1113)
167 PF15387 DUF4611: Domain of un 44.7 16 0.00034 32.5 2.0 22 93-114 63-84 (96)
168 KOG1827 Chromatin remodeling c 44.3 3.9 8.5E-05 47.1 -2.2 74 470-544 214-287 (629)
169 cd04266 DUF619-NAGS-FABP DUF61 39.7 1.2E+02 0.0026 27.6 7.0 30 277-306 37-67 (108)
170 PF09924 DUF2156: Uncharacteri 36.4 4.9E+02 0.011 26.7 12.9 116 199-318 122-243 (299)
171 KOG2696 Histone acetyltransfer 33.9 41 0.00088 36.8 3.5 101 210-317 140-255 (403)
172 PRK04531 acetylglutamate kinas 33.3 2.1E+02 0.0045 31.6 8.9 68 230-309 272-340 (398)
173 KOG0772 Uncharacterized conser 30.9 38 0.00082 38.6 2.7 34 326-369 439-472 (641)
174 KOG1832 HIV-1 Vpr-binding prot 30.8 25 0.00054 42.4 1.4 12 85-96 1403-1414(1516)
175 PF02388 FemAB: FemAB family; 28.4 1.2E+02 0.0027 33.1 6.2 89 255-354 36-146 (406)
176 PRK14852 hypothetical protein; 27.3 2.7E+02 0.0058 34.5 9.1 91 253-353 74-186 (989)
177 COG5630 ARG2 Acetylglutamate s 26.2 2.6E+02 0.0056 31.1 7.8 73 230-308 355-430 (495)
178 COG5665 NOT5 CCR4-NOT transcri 25.8 1.4E+02 0.003 33.0 5.8 33 11-43 197-229 (548)
179 PF11124 Pho86: Inorganic phos 25.8 2.3E+02 0.005 30.3 7.3 84 253-336 168-268 (304)
180 KOG3130 Uncharacterized conser 25.6 37 0.0008 37.5 1.5 10 231-240 352-361 (514)
181 KOG0943 Predicted ubiquitin-pr 24.7 1.1E+02 0.0024 38.6 5.1 7 207-213 1918-1924(3015)
182 KOG3014 Protein involved in es 22.2 3.9E+02 0.0084 28.0 7.9 96 210-309 90-213 (257)
183 COG1624 Uncharacterized conser 20.4 1.5E+02 0.0033 30.7 4.7 46 228-299 160-205 (247)
184 TIGR02606 antidote_CC2985 puta 20.3 1.6E+02 0.0035 24.4 4.0 28 495-523 12-39 (69)
No 1
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.8e-64 Score=555.33 Aligned_cols=345 Identities=46% Similarity=0.808 Sum_probs=321.9
Q ss_pred chhhHHHHHHHHcCCeEEEEeeCCCh----hhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCE-EEEE
Q 008716 194 SAREELLKREEEAGNLKFVCLSNDGI----DEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNV-VVGG 268 (556)
Q Consensus 194 ~~r~~~~~~ee~~g~i~f~~~~nd~~----~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~-VIGG 268 (556)
..|++.+..||..|.|+|+||.|+.+ ...++||++++|+|++|||+||++||.|||||..|++++++.+++ ||||
T Consensus 355 ~~n~~~~n~ee~~~~~~~~vv~~~~s~~~~~~~~~~li~~~~~f~~qL~empkEyi~rlv~d~~h~~~~~~~d~~g~vgg 434 (720)
T KOG1472|consen 355 WRNCEKYNSEESHGLIEFAVIMNSKSLALIKEIPIELIGLRNEFSKQLPEMPKEYISRLVFDTSHHVMARIKDNEGVVGG 434 (720)
T ss_pred HhcchhhccccchhhhhhhhhhccCcHhHhccchhhhccchhHHHhhcccchHHHHHhhccccccccceeeccccccccc
Confidence 45999999999999999999999987 788999999999999999999999999999999999999998876 9999
Q ss_pred EEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCccccccccceEeee
Q 008716 269 ITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGY 348 (556)
Q Consensus 269 I~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~ 348 (556)
||+|+|+.++|.||+||||+.+.|++|||++||+|++++.+....+.++++|||+.|+++|+||||+++|.+++.+|.||
T Consensus 435 i~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~aigyfkkqgfs~ei~~~~~~~~g~ 514 (720)
T KOG1472|consen 435 ICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGAIGYFKKQGFSKEIKFEKSPYVGY 514 (720)
T ss_pred cccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcccccccCccchhhcccccCcCccc
Confidence 99999999999999999999999999999999999999999833489999999999999999999999999999999999
Q ss_pred eccCCCceeEeeeeCCCCCccchhHHHH-HHHHHHHHHHH-hhcccccccCCccccccccCCCccccCCCCCCcccccCC
Q 008716 349 IKDYDGGILMECKIDPKLPYTDLSTMIR-RQRQAIDEKIR-ELSNCHIVYPGIDFQKKEAGVPKKIIKVEDIPGLREAGW 426 (556)
Q Consensus 349 IKdY~gatLM~C~l~p~i~y~~~~~~i~-~Qk~al~~kir-~~s~~hiVypGl~~~k~e~g~p~k~i~~~~IPGl~EaGw 426 (556)
||+|+|||||.|.++|.|+|+++..++. .|+..+.++|. .+...++|||||++++. + .+.+.+..|||++|+||
T Consensus 515 ikdye~~tl~~c~l~~~i~~t~~~~~~~~~~~a~l~~~i~~~~~~~~kv~~gl~~~~~--~--~~~~~~~~iPg~~E~~~ 590 (720)
T KOG1472|consen 515 IKDYEGGTLMPCELLPEIPYTELSAIVEHPQKAKLGREIEPEIDEYFKVYPGLECFKD--G--VPQIPPRKIPGFRESGW 590 (720)
T ss_pred cccccCccccchhhccCcchhhhhhhhhhhHHHHHHHhhccccccccccccccccccc--c--ccccCcccCCCchhhcc
Confidence 9999999999999999999999999999 99999999998 77889999999998875 3 46788999999999999
Q ss_pred CCCCCCCccccccccCCCCcccHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCC
Q 008716 427 TPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQY 506 (556)
Q Consensus 427 tp~~~~~sr~r~~~~~~d~~~~~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~Y 506 (556)
.|.....++. -.....+...+..+|..|.+|..+|||.+||+..++||||++|++||||.||+.+|..+.
T Consensus 591 ~~~~~~~r~~---------~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~- 660 (720)
T KOG1472|consen 591 KPEKESYRQE---------YKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQ- 660 (720)
T ss_pred CcchHHHHhh---------hcccchhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccc-
Confidence 9987544321 012346778899999999999999999999999999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008716 507 YVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 507 Y~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe~~lk~~ 552 (556)
|..+..|++|+.+||.||+.||+.++.+|++|..|+.+|...+...
T Consensus 661 y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 661 YTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred hhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhh
Confidence 8999999999999999999999999999999999999999988765
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.8e-27 Score=206.86 Aligned_cols=103 Identities=34% Similarity=0.551 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 449 ~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
+.+++.+++.||+.|++|+.+|||++||++. .+||||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 3 ~~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY-YWSASECIQDFNTMFTNCYI 81 (107)
T ss_pred cHHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999986 69999999999999999999999976 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008716 527 YNSPDTIYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~Fe~~lk~~ 552 (556)
||+++|.++++|..|+++|+++++.+
T Consensus 82 yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 82 YNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999764
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.8e-26 Score=203.90 Aligned_cols=104 Identities=30% Similarity=0.550 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 450 KHLTAFMRSLLKSMHDH-VDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 450 ~~L~~~l~~IL~~L~~~-~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
+.|++.|..++++|.++ +.+|||++||++. ++||||++|++||||+||++||+++. |.++++|.+|++|||.||+.
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~ 80 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ-YQDPWQYVDDVWLMFDNAWL 80 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999 9999999999987 69999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 008716 527 YNSPDTIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
||+++|.++++|.+|+++|++.++..++
T Consensus 81 yN~~~s~i~~~a~~l~~~F~~~~~~~~~ 108 (108)
T cd05495 81 YNRKTSRVYKYCTKLAEVFEQEIDPVMQ 108 (108)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988763
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.1e-26 Score=201.21 Aligned_cols=95 Identities=27% Similarity=0.544 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008716 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (556)
Q Consensus 454 ~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (556)
+.|..||+.|++++.+|||..||++..+||||++|++||||+||++||+++. |.++++|.+||+|||.||++||+++|.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGS-YSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 5689999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008716 534 YYKCATRHVDTINIVF 549 (556)
Q Consensus 534 ~~k~A~~Lek~Fe~~l 549 (556)
++++|.+|+++|.+++
T Consensus 82 i~~~a~~le~~f~~~~ 97 (97)
T cd05505 82 VLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 5
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.4e-26 Score=206.14 Aligned_cols=104 Identities=27% Similarity=0.428 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008716 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (556)
Q Consensus 449 ~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN 528 (556)
...|+..|..||+.|++|+.+|||++||++..+||||++|++||||+||++||+++. |.++++|.+||+|||.||+.||
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~-Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGN-YDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999999999999999999999999976 8999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhh
Q 008716 529 SP-DTIYYKCATRHVDTINIVFVFHL 553 (556)
Q Consensus 529 ~p-dS~~~k~A~~Lek~Fe~~lk~~l 553 (556)
++ ++.++.+|..|+++|++++++++
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 85 89999999999999999998775
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=198.27 Aligned_cols=102 Identities=26% Similarity=0.323 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCC
Q 008716 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNS 529 (556)
Q Consensus 450 ~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~ 529 (556)
..|++.|..+++.|.+|+.+|||.+||+...+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.||+
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGT-IRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCC
Confidence 35889999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 008716 530 PDTIYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 530 pdS~~~k~A~~Lek~Fe~~lk~~ 552 (556)
+++.++.+|..|++.|.++++..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998754
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.6e-25 Score=196.48 Aligned_cols=97 Identities=32% Similarity=0.492 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCC
Q 008716 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNS 529 (556)
Q Consensus 450 ~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~ 529 (556)
++|+.+|+.+++.|+ |+.+|||.+||++.++||||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKA-YGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCC
Confidence 468899999999999 9999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 008716 530 PDTIYYKCATRHVDTINIV 548 (556)
Q Consensus 530 pdS~~~k~A~~Lek~Fe~~ 548 (556)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 8
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.7e-25 Score=196.58 Aligned_cols=104 Identities=33% Similarity=0.435 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhhhC
Q 008716 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESE--QYYVTFEMFVADVKRMFANARTYN 528 (556)
Q Consensus 451 ~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~--~YY~s~~eF~aDvrLIF~Ncr~YN 528 (556)
..++.|..||.+|.+|+.+|||.+||++ .+|+||++|++||||+||++||+.+ .+|.++++|.+||+|||.||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4567899999999999999999999999 8999999999999999999999984 348999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008716 529 SPDTIYYKCATRHVDTINIVFVFHLLS 555 (556)
Q Consensus 529 ~pdS~~~k~A~~Lek~Fe~~lk~~lls 555 (556)
+++|.++++|..|++.|+++++++||.
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999974
No 9
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.9e-25 Score=198.82 Aligned_cols=104 Identities=29% Similarity=0.449 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHhhcC-CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 448 NQKHLTAFMRSLLKSMHDH-VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 448 ~~~~L~~~l~~IL~~L~~~-~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
.+..|...|..|++.|+++ +.+|||+.||++.++|+||++|++||||+||++||+++. |.++++|.+|++|||.||+.
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQ-YKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999 899999999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHHhh
Q 008716 527 YNSPDT-IYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 527 YN~pdS-~~~k~A~~Lek~Fe~~lk~~ 552 (556)
||++++ .++++|..|+++|++.+..+
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999865 78899999999999998765
No 10
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.1e-25 Score=193.32 Aligned_cols=95 Identities=38% Similarity=0.661 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008716 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (556)
Q Consensus 454 ~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (556)
..|+.||+.|.+++.++||+.||++..+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.||+++|.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQ-YKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4699999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008716 534 YYKCATRHVDTINIVF 549 (556)
Q Consensus 534 ~~k~A~~Lek~Fe~~l 549 (556)
++++|..|+++|+++|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 11
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5e-25 Score=198.02 Aligned_cols=104 Identities=34% Similarity=0.527 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008716 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (556)
Q Consensus 449 ~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN 528 (556)
.+.....|..||+.|.+++.+|||..||+...+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.||
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~-Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGE-YKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 445667899999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 008716 529 SPDTIYYKCATRHVDTINIVFVFHL 553 (556)
Q Consensus 529 ~pdS~~~k~A~~Lek~Fe~~lk~~l 553 (556)
+++|.++++|..|+++|++++++.-
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 12
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.8e-25 Score=192.30 Aligned_cols=99 Identities=47% Similarity=0.846 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008716 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pd 531 (556)
++..|..|++.|.+|+.++||++||++..+|+||++|++||||+||++||+++. |.++++|..||+|||.||+.||+++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~-Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGY-YVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567899999999999999999999999999999999999999999999999977 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 008716 532 TIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 532 S~~~k~A~~Lek~Fe~~lk~ 551 (556)
|.++++|..|++.|++++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=2.1e-24 Score=193.28 Aligned_cols=103 Identities=34% Similarity=0.579 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008716 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (556)
Q Consensus 451 ~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~p 530 (556)
+|+..|+.+++.|++|+.+|||.+||++.++||||++|++||||+||++||+++. |.++++|.+||+|||.||+.||++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~-Y~s~~ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQ-YLTAKDFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCC-cCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhhhc
Q 008716 531 D----TIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 531 d----S~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
+ +.++.+|..|++.|.+++...++
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 69999999999999999998765
No 14
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=191.39 Aligned_cols=100 Identities=23% Similarity=0.396 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhcCCC------CCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 452 LTAFMRSLLKSMHDHVD------AWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~------a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
|++.|+.||+.|.++.. +|||.+||++..+||||++|++||||+||++||+++. |.++++|..||+|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHK-YRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHH
Confidence 56778888888888765 8999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008716 526 TYNSPDTIYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~lk~~ 552 (556)
.||+++|.+|++|..|+++|.++++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998763
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=186.79 Aligned_cols=96 Identities=36% Similarity=0.609 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008716 453 TAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (556)
Q Consensus 453 ~~~l~~IL~~L~~~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~p 530 (556)
.+.|..||+.|++++.+|+|..||++. .+|+||++|++||||+||++||+++. |.++++|.+|+++||.||+.||++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE-YSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 467999999999999999999999976 69999999999999999999999987 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 008716 531 DTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 531 dS~~~k~A~~Lek~Fe~~l 549 (556)
+|.++++|.+|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875
No 16
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.5e-24 Score=187.66 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 008716 455 FMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIY 534 (556)
Q Consensus 455 ~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~ 534 (556)
.|+.||..|.+++.+++|..+ +..+||||++|++||||+||++||.+++ |.++++|++||+|||.||+.||+++ .+
T Consensus 6 ~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~-Y~s~~ef~~D~~Lif~N~~~yN~~~-~~ 81 (102)
T cd05501 6 KCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERV-YHTVEGFVRDMRLIFHNHKLFYKDD-DF 81 (102)
T ss_pred HHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHcCCC-HH
Confidence 499999999999999999764 4589999999999999999999999988 8999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 008716 535 YKCATRHVDTINIVFVFHL 553 (556)
Q Consensus 535 ~k~A~~Lek~Fe~~lk~~l 553 (556)
+++|..|++.|++++++.+
T Consensus 82 ~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 82 GQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 17
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.6e-24 Score=187.44 Aligned_cols=93 Identities=42% Similarity=0.677 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008716 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pd 531 (556)
+...|+.+|++|+.++.+|+|.+||++.++|+||++|++||||+||++||+++. |.++++|..||+|||.||+.||+++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQR-YRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 008716 532 TIYYKCATRHVDTI 545 (556)
Q Consensus 532 S~~~k~A~~Lek~F 545 (556)
|.+|++|.+|++.-
T Consensus 81 s~~~~~A~~l~~~~ 94 (98)
T cd05512 81 TIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998754
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.9e-24 Score=187.37 Aligned_cols=94 Identities=35% Similarity=0.547 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008716 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pd 531 (556)
|+.+|..|++.|++++.+++|..||+...+|+||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNND-YQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 678899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 008716 532 TIYYKCATRHVDTIN 546 (556)
Q Consensus 532 S~~~k~A~~Lek~Fe 546 (556)
|.++++|.+|.+.-.
T Consensus 81 s~~~~~A~~L~~~~~ 95 (98)
T cd05513 81 TIYYKAAKKLLHSGM 95 (98)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999987543
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.7e-24 Score=186.62 Aligned_cols=95 Identities=35% Similarity=0.646 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhc---CCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008716 454 AFMRSLLKSMHD---HVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (556)
Q Consensus 454 ~~l~~IL~~L~~---~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN 528 (556)
+.|..||+.|.+ ++.+|||++||++. .+|+||++|++||||++|++||+++. |+++++|.+||+|||.||+.||
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~-Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQ-YQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 468888888887 46799999999998 99999999999999999999999987 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008716 529 SPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 529 ~pdS~~~k~A~~Lek~Fe~~l 549 (556)
+++|.++.+|.+|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.3e-24 Score=185.82 Aligned_cols=99 Identities=34% Similarity=0.557 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 450 ~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
+.+++.|..+++.|++++.++||..||++. .+|+||++|++||||++|++||+++. |.++++|..||++||.||+.|
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV-YTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999976 79999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008716 528 NSPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~l 549 (556)
|+++|.++.+|.+|++.|++.+
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999863
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.8e-24 Score=189.07 Aligned_cols=99 Identities=32% Similarity=0.696 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 008716 453 TAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDT 532 (556)
Q Consensus 453 ~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS 532 (556)
...++.|+++|++++.++||..||++..+|+||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+++|
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~-Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHK-YQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45789999999999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008716 533 IYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 533 ~~~k~A~~Lek~Fe~~lk~~ 552 (556)
.++++|..|++.|++.+++.
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 81 VYTKKAKEMLELAEELLAER 100 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 22
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.4e-24 Score=184.95 Aligned_cols=96 Identities=36% Similarity=0.653 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhcC---CCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 453 TAFMRSLLKSMHDH---VDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 453 ~~~l~~IL~~L~~~---~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
.+.|..||+.|+++ +.++||.+||++. .+|+||++|++||||++|++||+++. |.++++|..||+|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~-Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE-YADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999 8899999999986 59999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008716 528 NSPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~l 549 (556)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 23
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.89 E-value=1.4e-23 Score=235.42 Aligned_cols=106 Identities=38% Similarity=0.584 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 448 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 448 ~~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
....+-+.|..||..|+.|+++|||..|||+. .+||||+||++||||+||++||.++. |.++.+|.+||||||.||+
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~-Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGE-YKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccc-cCCHHHHHHHHHHHHHHHH
Confidence 44566778999999999999999999999987 69999999999999999999999976 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 008716 526 TYNSPDTIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
+||++++++|.+|..|++.|+.+|+.+++
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~ 326 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPL 326 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999998654
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.5e-23 Score=183.06 Aligned_cols=97 Identities=33% Similarity=0.514 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhc------CCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 452 LTAFMRSLLKSMHD------HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 452 L~~~l~~IL~~L~~------~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
|++.|+.|++.|.+ ++.+++|.+||+...+|+||++|++||||++|++||+.+. |.++++|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~-Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRA-YKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHH
Confidence 35677788888774 4568999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 008716 526 TYNSPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~l 549 (556)
.||+++|.++.+|..|++.|++++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4.5e-23 Score=182.39 Aligned_cols=96 Identities=27% Similarity=0.448 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhcC------CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 454 AFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 454 ~~l~~IL~~L~~~------~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
+.|+.|++.|.++ +.+++|.+||+..++|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQ-YQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 567999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 008716 528 NSPDTIYYKCATRHVDTINIVFV 550 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~lk 550 (556)
|+++|.++++|..|++.|.+..+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 26
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=1.1e-22 Score=177.55 Aligned_cols=103 Identities=43% Similarity=0.761 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 448 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 448 ~~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
.++.+...|..|++.+.+++.+++|.+||++..+|+||++|++||||++|++||+++. |.++++|.+||++||.||+.|
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~-Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGK-YSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 008716 528 NSPDTIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~lk~ 551 (556)
|++++.++++|..|++.|++.|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 27
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=179.52 Aligned_cols=96 Identities=27% Similarity=0.398 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhcC------CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 452 LTAFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 452 L~~~l~~IL~~L~~~------~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
|...|+.||+.|..+ ..+|||.++|++..+||||++|++||||++|++||+++. |.++++|..||.|||.||+
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~-Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGY-YKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHH
Confidence 455666666666654 457999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHH
Q 008716 526 TYNSPDTIYYKCATRHVDTINIV 548 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~ 548 (556)
.||+++|.++++|..|+++|++.
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999864
No 28
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=181.03 Aligned_cols=102 Identities=23% Similarity=0.355 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCC------CCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 453 TAFMRSLLKSMHDHV------DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 453 ~~~l~~IL~~L~~~~------~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
.+.|..|++.|+++. .+.+|.++|+...+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEE-YDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 457888999988753 34689999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008716 527 YNSPDTIYYKCATRHVDTINIVFVFHLLS 555 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~Fe~~lk~~lls 555 (556)
||+++|.++++|..|+++|++.+++++..
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999887653
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=178.82 Aligned_cols=81 Identities=33% Similarity=0.575 Sum_probs=78.0
Q ss_pred CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 008716 467 VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTIN 546 (556)
Q Consensus 467 ~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe 546 (556)
+.++||.+||+...+||||++|++||||+||++||+++. |.++++|+.||+|||.||+.||+++|.++++|.+|+++|+
T Consensus 22 ~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 22 LLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGE-YETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred CccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999987 8999999999999999999999999999999999999998
Q ss_pred HH
Q 008716 547 IV 548 (556)
Q Consensus 547 ~~ 548 (556)
++
T Consensus 101 ~~ 102 (103)
T cd05520 101 AK 102 (103)
T ss_pred Hh
Confidence 64
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=178.89 Aligned_cols=94 Identities=29% Similarity=0.480 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhcC------CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 453 TAFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 453 ~~~l~~IL~~L~~~------~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
+++|..|++.|.++ +.+++|.++|++.++|+||++|++||||+||++||+++. |.++++|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGY-YKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 45666777776665 456999999999999999999999999999999999876 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 008716 527 YNSPDTIYYKCATRHVDTINI 547 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~Fe~ 547 (556)
||+++|.++++|..|++.|+.
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999985
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=3.8e-22 Score=182.45 Aligned_cols=101 Identities=31% Similarity=0.388 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhh---cCCCCCCcccCCCCC-CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 450 KHLTAFMRSLLKSMH---DHVDAWPFKEPVDAR-DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 450 ~~L~~~l~~IL~~L~---~~~~a~pF~~PVd~~-evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
..++..|..++.+|. +++.+++|..||++. .+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~-Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRY-YRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 445666777777777 899999999999999 99999999999999999999999975 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 008716 526 TYNSPDTIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~lk~ 551 (556)
.||+++|.++++|.+|++.|.+.+..
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998864
No 32
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.8e-22 Score=176.18 Aligned_cols=98 Identities=31% Similarity=0.457 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHH--hhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 450 KHLTAFMRSLLKS--MHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 450 ~~L~~~l~~IL~~--L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
++++.++..|++. ...+..+.+|..+|++..+||||++|++||||+||++||+++. |.++++|.+||+|||.||+.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDK-YATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 2244678899999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 008716 528 NSPDTIYYKCATRHVDTINIV 548 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~ 548 (556)
|+++|.++++|..|+++|+++
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 33
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.86 E-value=2.9e-22 Score=211.79 Aligned_cols=224 Identities=33% Similarity=0.440 Sum_probs=175.0
Q ss_pred HHcCCeEEEEeeCCChh-hHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEE-ECCEEEEEEEEeeec-CCc--
Q 008716 204 EEAGNLKFVCLSNDGID-EHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-RGNVVVGGITYRPYV-SQK-- 278 (556)
Q Consensus 204 e~~g~i~f~~~~nd~~~-~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~-~~g~VIGGI~~r~f~-~~~-- 278 (556)
+..+...++...|++.. .+...+.+++++|..|+..|+.+++.+.+++..+...... .....+|++|+.++. ...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 98 (371)
T COG5076 19 EEFGNELLRLVDNDSSPFPNAPEEEGSKNLFQKQLKRMPKEYITSIVDDREPGSMANVNDDLENVGGITYSPFEKNRPES 98 (371)
T ss_pred hhhhhhhhhccccCCCcccchhhhccccccchhhhcccchhhhhhhhcccccccccccCcchhcccCcccCCcccccccc
Confidence 77788888999999888 8899999999999999999999999999986655533333 345899999998864 333
Q ss_pred --eEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCccccccccceEeeeeccCCCce
Q 008716 279 --FGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGI 356 (556)
Q Consensus 279 --f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~gat 356 (556)
+.++++++.....+.+|+|+.++.+.+.-++.
T Consensus 99 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k---------------------------------------------- 132 (371)
T COG5076 99 LRFDEIVFLAIESVTPESGLGSLLMAHLKTSVKK---------------------------------------------- 132 (371)
T ss_pred ccccceeccccccccccccccccccccchHHHHh----------------------------------------------
Confidence 78999999999999999999999887660000
Q ss_pred eEeeeeCCCCCccchhHHHHHHHHHHHHHHHhhcccccccCCccccccccCCCccccCCCCCCcccccCCCCCCCCCccc
Q 008716 357 LMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGVPKKIIKVEDIPGLREAGWTPDQWGHSRF 436 (556)
Q Consensus 357 LM~C~l~p~i~y~~~~~~i~~Qk~al~~kir~~s~~hiVypGl~~~k~e~g~p~k~i~~~~IPGl~EaGwtp~~~~~sr~ 436 (556)
. +. .|....
T Consensus 133 --------------------------------~-----------------~~----------------~~~~~~------ 141 (371)
T COG5076 133 --------------------------------R-----------------KT----------------PKIEDE------ 141 (371)
T ss_pred --------------------------------h-----------------cC----------------Ccccch------
Confidence 0 00 000000
Q ss_pred cccccCCCCcccHHHHHHHHHHHHHH--hhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHH
Q 008716 437 RTLTAATDGASNQKHLTAFMRSLLKS--MHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFV 514 (556)
Q Consensus 437 r~~~~~~d~~~~~~~L~~~l~~IL~~--L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~ 514 (556)
...+....++..+... -.....+++|+.+|++.++|+||.+|+.||||.+|++||+.+. |.++++|+
T Consensus 142 ----------~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~-Y~s~eef~ 210 (371)
T COG5076 142 ----------LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGR-YKSFEEFV 210 (371)
T ss_pred ----------hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhh-hhhHHHHH
Confidence 0011111111111111 1123567899999999999999999999999999999999988 89999999
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 008716 515 ADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFVFHLLS 555 (556)
Q Consensus 515 aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe~~lk~~lls 555 (556)
.|+.|||.||+.||++++.+|.+|..|++.|...++.+...
T Consensus 211 ~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 211 SDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred HHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999977653
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.2e-21 Score=170.38 Aligned_cols=94 Identities=29% Similarity=0.546 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhc------CCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 454 AFMRSLLKSMHD------HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 454 ~~l~~IL~~L~~------~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
..++.|++.|.+ ++.++||.++|+...+|+||++|++||||++|++||+.+. |.++++|..||+|||.||+.|
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRK-YKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 345555555554 4678999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 008716 528 NSPDTIYYKCATRHVDTINIV 548 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~ 548 (556)
|++++.++.+|..|++.|++.
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=4.6e-21 Score=170.23 Aligned_cols=97 Identities=32% Similarity=0.440 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCC------CCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008716 452 LTAFMRSLLKSMHDHV------DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~------~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr 525 (556)
|++.|+.+++.|++.. .+.+|..+++...+||||++|++||||+||++||++ |.++++|.+|++|||.||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~---Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH---YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 4566777777777653 446899999999999999999999999999999996 7999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 008716 526 TYNSPDTIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 526 ~YN~pdS~~~k~A~~Lek~Fe~~lk~ 551 (556)
.||+++|.+|++|..|+++|.+++..
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~~ 104 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVIIP 104 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998753
No 36
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=8.9e-21 Score=160.09 Aligned_cols=96 Identities=41% Similarity=0.711 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcC--CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008716 453 TAFMRSLLKSMHDH--VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (556)
Q Consensus 453 ~~~l~~IL~~L~~~--~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~p 530 (556)
...|..+++.|..+ +.+++|..||++..+|+||++|++||||++|++||+++. |.++++|.+||++||.||+.||++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~-Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGE-YKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35688899999998 999999999999999999999999999999999999976 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 008716 531 DTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 531 dS~~~k~A~~Lek~Fe~~l 549 (556)
++.++++|..|+..|++.+
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 37
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=1.2e-20 Score=157.84 Aligned_cols=84 Identities=48% Similarity=0.860 Sum_probs=79.3
Q ss_pred HHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 008716 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYY 535 (556)
Q Consensus 456 l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~ 535 (556)
|+.||+.|.+++.+++|..||+...+|+|+++|++||||++|++||+++. |.++++|..||++||.||+.||+++|.++
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~-Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGK-YKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTS-SSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccc-hhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 78899999999999999999999999999999999999999999999987 89999999999999999999999999999
Q ss_pred HHHHH
Q 008716 536 KCATR 540 (556)
Q Consensus 536 k~A~~ 540 (556)
++|++
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99975
No 38
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=8.7e-20 Score=162.88 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhc-CCCCCCcccCCCC-----CCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 454 AFMRSLLKSMHD-HVDAWPFKEPVDA-----RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 454 ~~l~~IL~~L~~-~~~a~pF~~PVd~-----~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
.++..++..+++ .+.++||..||.. ..+|+||++|++||||+||++||++++ |+++++|.+||+|||+||..|
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK-YTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 456777888887 5667999999962 259999999999999999999999988 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 008716 528 NSPDTIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
|+++|.++.+|..|.+.....+.++-.
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei~~ 108 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLRELRL 108 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887643
No 39
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.70 E-value=5.6e-17 Score=145.01 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcCC------CCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 008716 451 HLTAFMRSLLKSMHDHV------DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANA 524 (556)
Q Consensus 451 ~L~~~l~~IL~~L~~~~------~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Nc 524 (556)
.++..+..|+..+++|. .+.||.+.++ ..|+||.+|+.||||.+|++||+++. |.++++|..||.+||.||
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~-Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGR-YRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCC-cCcHHHHHHHHHHHHHHH
Confidence 46778888888888884 4678999887 44778899999999999999999988 899999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 008716 525 RTYNSPDTIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 525 r~YN~pdS~~~k~A~~Lek~Fe~~lk~ 551 (556)
+.||.++|.+|++|..|+++|.+.-.+
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976554
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.5e-17 Score=198.50 Aligned_cols=101 Identities=32% Similarity=0.542 Sum_probs=95.9
Q ss_pred HHHH-HHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008716 452 LTAF-MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (556)
Q Consensus 452 L~~~-l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~p 530 (556)
.+.. |..||..|..|..||||++||++..+|+||+||++||||+||+.|+..+. |.++++|..|++|||.||..||.+
T Consensus 1301 ~re~~~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~-Y~~~eef~~Di~lvf~Nc~~yN~~ 1379 (1404)
T KOG1245|consen 1301 NRESTCEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGI-YPSPEEFATDIELVFDNCETYNED 1379 (1404)
T ss_pred cchhhHHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHhccc
Confidence 3443 89999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 008716 531 DTIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 531 dS~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
|.++++...|.++|.++|...++
T Consensus 1380 -s~i~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1380 -SEIGRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred -hhhhhhcchHHHHHHHHHHhhcC
Confidence 99999999999999999988776
No 41
>PRK07757 acetyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=124.95 Aligned_cols=107 Identities=23% Similarity=0.379 Sum_probs=89.9
Q ss_pred cEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCC
Q 008716 255 KSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (556)
Q Consensus 255 ~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGF 334 (556)
..+++..+|++||.+.+.... ..+.+|..++|.|++||+|+|++||.++++++++ .++..++... .+..||+|+||
T Consensus 42 ~~~i~~~~~~lvG~~~l~~~~-~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~-~g~~~i~~~~--~~~~~Y~k~GF 117 (152)
T PRK07757 42 DFYVAEEEGEIVGCCALHILW-EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARE-LGVKRVFALT--YQPEFFEKLGF 117 (152)
T ss_pred cEEEEEECCEEEEEEEEEecc-CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCCeEEEEe--CcHHHHHHCCC
Confidence 456777889999988876543 3567899999999999999999999999999997 7887775543 35789999999
Q ss_pred cc--ccccccceEeeeeccCCCceeEeeeeCCCCCccchhHHHHH
Q 008716 335 TK--EIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRR 377 (556)
Q Consensus 335 tk--~i~l~~~~w~G~IKdY~gatLM~C~l~p~i~y~~~~~~i~~ 377 (556)
+. ...+++.+|. +|.+||+.+.|+.++||+.
T Consensus 118 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 150 (152)
T PRK07757 118 REVDKEALPQKVWA------------DCIKCPKFPNCDEIAMIKE 150 (152)
T ss_pred EEcccccCChhHHh------------cCccCCCCCCcchhhhhhh
Confidence 54 5677899999 5999999999999999864
No 42
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.37 E-value=1.4e-12 Score=122.51 Aligned_cols=129 Identities=19% Similarity=0.326 Sum_probs=95.7
Q ss_pred HHHHHHhhhCCCCcH--HHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHH
Q 008716 228 GLKNIFARQLPNMPK--EYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLK 305 (556)
Q Consensus 228 ~lkniF~~qLp~MPk--eYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lk 305 (556)
.|-.=+..|---+|+ +.+...+ ..-.++.++|.|||++...++.+.+.+||..+||+|++|++|+|.+|+++++
T Consensus 16 ~Li~~~~~~gil~~rs~~~le~~i----~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~ 91 (153)
T COG1246 16 ELIRPLELQGILLRRSREQLEEEI----DDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLL 91 (153)
T ss_pred HHHHHHhhccccchhhHHHHHHHH----hhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHH
Confidence 333334444333343 4455444 4556777899999977676688899999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEccCCcchhhhhhcCCcc--ccccccceEeeeeccCCCceeEeeeeCCCCCccchhHH
Q 008716 306 QHARDVDGLTHFLTYADNNAVGYFIKQGFTK--EIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTM 374 (556)
Q Consensus 306 e~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk--~i~l~~~~w~G~IKdY~gatLM~C~l~p~i~y~~~~~~ 374 (556)
..||+ .|+..++..+. ++.+||+++||+. ...||..+|. .|..|++..-|....|
T Consensus 92 ~~Ar~-~gi~~lf~LTt-~~~~~F~~~GF~~vd~~~LP~~~~~------------~~~~~~~~~~~~~~~~ 148 (153)
T COG1246 92 ADARE-LGIKELFVLTT-RSPEFFAERGFTRVDKDELPEEVWS------------SYNFCERRSKCLAFDL 148 (153)
T ss_pred HHHHH-cCCceeeeeec-ccHHHHHHcCCeECccccCCHHHHH------------HHHhhhhhhhHHHHHH
Confidence 99998 99998776643 8899999999943 3469999999 5555555544444333
No 43
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.36 E-value=2.2e-12 Score=106.21 Aligned_cols=77 Identities=23% Similarity=0.468 Sum_probs=63.8
Q ss_pred CCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhc
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKq 332 (556)
++..+++.+++++||++++... ..++.|..++|.|++||||||++||+++++.++. . .+.++++..++.||+|+
T Consensus 2 ~~~~~~~~~~~~ivG~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~-~---~i~l~~~~~~~~fY~~~ 75 (79)
T PF13508_consen 2 KERFFVAEDDGEIVGFIRLWPN--EDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS-K---KIFLFTNPAAIKFYEKL 75 (79)
T ss_dssp TEEEEEEEETTEEEEEEEEEET--TTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC-S---EEEEEEEHHHHHHHHHT
T ss_pred ccEEEEEEECCEEEEEEEEEEc--CCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC-C---cEEEEEcHHHHHHHHHC
Confidence 3567888889999998888554 4578999999999999999999999999999975 3 34455567799999999
Q ss_pred CCc
Q 008716 333 GFT 335 (556)
Q Consensus 333 GFt 335 (556)
||+
T Consensus 76 GF~ 78 (79)
T PF13508_consen 76 GFE 78 (79)
T ss_dssp TEE
T ss_pred cCC
Confidence 996
No 44
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.29 E-value=5.8e-11 Score=102.68 Aligned_cols=88 Identities=23% Similarity=0.386 Sum_probs=72.9
Q ss_pred CcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE
Q 008716 240 MPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (556)
Q Consensus 240 MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt 319 (556)
+..+++.+.+-+..+..+|+..+|+|||.+.+. .. .+|..+.|.|.+||+|+|+.||+++++.+++ ++..+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~---~~--~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~--~~~~l~~ 102 (117)
T PF13673_consen 30 YSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE---PD--GEISHLYVLPEYRGRGIGRALLDAAEKEAKD--GIRRLTV 102 (117)
T ss_dssp SSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE---TC--EEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT--TCEEEEE
T ss_pred cCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc---CC--CeEEEEEEChhhcCCcHHHHHHHHHHHHHHc--CCcEEEE
Confidence 457788888766677889999999999998875 22 4588899999999999999999999999964 8888888
Q ss_pred ccCCcchhhhhhcCC
Q 008716 320 YADNNAVGYFIKQGF 334 (556)
Q Consensus 320 ~aD~~Ai~FYkKqGF 334 (556)
.++..|..||+|+||
T Consensus 103 ~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 103 EANERARRFYRKLGF 117 (117)
T ss_dssp EC-HHHHHHHHHTT-
T ss_pred EeCHHHHHHHHhCCC
Confidence 888889999999999
No 45
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.27 E-value=4.7e-11 Score=107.11 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=68.9
Q ss_pred HHHHhhcCCCcEEEEEECCEEEEEEEEeeec----CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-
Q 008716 245 IVRLVMDRSHKSVMVIRGNVVVGGITYRPYV----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT- 319 (556)
Q Consensus 245 I~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~----~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt- 319 (556)
+...+-++....+++..+|++||.+.+.... ...+++|..++|.|++||+|||+.||++++++|++ .++..+..
T Consensus 38 ~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~-~~~~~i~l~ 116 (144)
T PRK10146 38 FNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQ-AGAEMTELS 116 (144)
T ss_pred HHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 3333445555567777889999988876532 12246888899999999999999999999999998 77765433
Q ss_pred -c-cCCcchhhhhhcCCcc
Q 008716 320 -Y-ADNNAVGYFIKQGFTK 336 (556)
Q Consensus 320 -~-aD~~Ai~FYkKqGFtk 336 (556)
. .+..|++||+|+||..
T Consensus 117 ~~~~n~~a~~fY~~~Gf~~ 135 (144)
T PRK10146 117 TNVKRHDAHRFYLREGYEQ 135 (144)
T ss_pred cCCCchHHHHHHHHcCCch
Confidence 2 3456999999999965
No 46
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.26 E-value=2.7e-11 Score=98.71 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=64.4
Q ss_pred EEECCEEEEEEEEeeecCC----ceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEcc---CCcchhhhhh
Q 008716 259 VIRGNVVVGGITYRPYVSQ----KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA---DNNAVGYFIK 331 (556)
Q Consensus 259 l~~~g~VIGGI~~r~f~~~----~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~a---D~~Ai~FYkK 331 (556)
+.++|+|||.+.+.+.... ..++|..++|.++||++|||+.||+++++++++ .++..+.+.. +..+..||+|
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-RGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-TTESEEEEEEETTGHHHHHHHHH
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-cCccEEEEEEeCCCHHHHHHHHH
Confidence 3578999999998887653 689999999999999999999999999999998 7777665432 3337999999
Q ss_pred cCCc
Q 008716 332 QGFT 335 (556)
Q Consensus 332 qGFt 335 (556)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9994
No 47
>PTZ00330 acetyltransferase; Provisional
Probab=99.23 E-value=1.9e-10 Score=103.54 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=83.2
Q ss_pred CeEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhc---C--CCcEEEEEECCEEEEEEEEeeec-----CC
Q 008716 208 NLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMD---R--SHKSVMVIRGNVVVGGITYRPYV-----SQ 277 (556)
Q Consensus 208 ~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D---~--~~~~~vl~~~g~VIGGI~~r~f~-----~~ 277 (556)
.+.|+.++-++.++...++. ++.. -|.++.+.+.+..-. . .+..+++..+|++||.+.+...+ ..
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 80 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLS---HLTS--APALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGK 80 (147)
T ss_pred eEEEEEcccccHHHHHHHHH---HhcC--CCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCC
Confidence 46777666665555544432 2222 233455555443321 1 12234444578999988764321 11
Q ss_pred ceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 278 ~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
.+.+|.-+.|.|++||+|||+.||+++++++++ .++..++...+..|+.||+|+||+.
T Consensus 81 ~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~-~~~~~l~l~~n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 81 CVGHIEDVVVDPSYRGQGLGRALISDLCEIARS-SGCYKVILDCTEDMVAFYKKLGFRA 138 (147)
T ss_pred ceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEecChHHHHHHHHCCCEE
Confidence 246788899999999999999999999999998 7877777777778999999999974
No 48
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.17 E-value=4.2e-10 Score=98.05 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=69.0
Q ss_pred cHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-
Q 008716 241 PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT- 319 (556)
Q Consensus 241 PkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt- 319 (556)
..+.+...+.+.....+++..+|++||.+.+.... ...+|..++|.|++||||+|+.||+++++++++ .++..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~-~~~~~i~~~ 94 (131)
T TIGR01575 18 TEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVL--DEAHILNIAVKPEYQGQGIGRALLRELIDEAKG-RGVNEIFLE 94 (131)
T ss_pred CHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecC--CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCeEEEE
Confidence 34555544433333344455689999998876543 336788899999999999999999999999997 66666554
Q ss_pred --ccCCcchhhhhhcCCcc
Q 008716 320 --YADNNAVGYFIKQGFTK 336 (556)
Q Consensus 320 --~aD~~Ai~FYkKqGFtk 336 (556)
..+..++.||+|+||+.
T Consensus 95 ~~~~n~~~~~~y~~~Gf~~ 113 (131)
T TIGR01575 95 VRVSNIAAQALYKKLGFNE 113 (131)
T ss_pred EecccHHHHHHHHHcCCCc
Confidence 34455899999999975
No 49
>PRK03624 putative acetyltransferase; Provisional
Probab=99.15 E-value=5e-10 Score=98.44 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=80.2
Q ss_pred eEEEEeeCCChhhHHHHHHHHHHHHhhhCCCC--cHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEe
Q 008716 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNM--PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCA 286 (556)
Q Consensus 209 i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~M--PkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flA 286 (556)
|.|+.++.++.++...+.... ...+.. +...+...+....+..+++..++++||.+++... .....|..++
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~--~~~~~i~~i~ 75 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC-----DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYD--GHRGWAYYLA 75 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc-----CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeecc--CCCceEEEEE
Confidence 567767666555544443332 111111 1233444443445666777778999998876533 2235666789
Q ss_pred ecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--cc-CCcchhhhhhcCCcc
Q 008716 287 ITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YA-DNNAVGYFIKQGFTK 336 (556)
Q Consensus 287 V~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~a-D~~Ai~FYkKqGFtk 336 (556)
|.|+|||+|||+.||.++++++++ .++..+.. .. +..++.||+|+||..
T Consensus 76 v~p~~rg~Gig~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~~~~~y~k~GF~~ 127 (140)
T PRK03624 76 VHPDFRGRGIGRALVARLEKKLIA-RGCPKINLQVREDNDAVLGFYEALGYEE 127 (140)
T ss_pred ECHHHhCCCHHHHHHHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHcCCcc
Confidence 999999999999999999999997 67765433 23 345899999999975
No 50
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.15 E-value=6.4e-10 Score=112.52 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=92.9
Q ss_pred eEEEEeeCCChhhHHHHHHHHHHHHhhh-CCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEee
Q 008716 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQ-LPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAI 287 (556)
Q Consensus 209 i~f~~~~nd~~~~~~~~L~~lkniF~~q-Lp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV 287 (556)
+.++.++-++.++...+ .+.+|... .|....+|+.+.+ +.+...+++..+|++||.+++........+||..++|
T Consensus 116 ~~IR~a~~~D~~~l~~L---~~~v~~~~~~~~~~~~~l~~~~-~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V 191 (266)
T TIGR03827 116 FTLRIATEDDADAMAAL---YRKVFPTYPFPIHDPAYLLETM-KSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFAT 191 (266)
T ss_pred eEEEECCHHHHHHHHHH---HHHHhccCCCCccCHHHHHHHh-cCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEE
Confidence 66666554444443333 34466432 3344568888765 4555567777889999988875544456689999999
Q ss_pred cCCCcccChHHHHHHHHHHHHHhcCCceEEEEcc---CCcchhhhhhcCCcccccccc
Q 008716 288 TADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA---DNNAVGYFIKQGFTKEIYLEK 342 (556)
Q Consensus 288 ~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~a---D~~Ai~FYkKqGFtk~i~l~~ 342 (556)
.|+|||+|||+.||.++++.+++ .++..+++.+ +..|..+|+|+||...-+++.
T Consensus 192 ~P~yRG~GiG~~Ll~~l~~~a~~-~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n 248 (266)
T TIGR03827 192 LPEYRGKGLAKILLAAMEKEMKE-KGIRTAYTIARASSYGMNITFARLGYAYGGTLVN 248 (266)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHH-CCCcEEEeehhhcchhHHHHHHHcCCccccEEee
Confidence 99999999999999999999997 8888776644 344788999999987555543
No 51
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.15 E-value=2e-11 Score=109.97 Aligned_cols=77 Identities=27% Similarity=0.366 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhcCCCCCCcccCCCC--CCCCchhhhcCCCCChHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHHh
Q 008716 454 AFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESE------QYYVTFEMFVADVKRMFANAR 525 (556)
Q Consensus 454 ~~l~~IL~~L~~~~~a~pF~~PVd~--~evPDYy~IIk~PMDLsTIkkKL~s~------~YY~s~~eF~aDvrLIF~Ncr 525 (556)
..|..+|..+..++.+|||..||++ ..+||||++||+||||+||+++|.+. .+|..-..+.+++..++.||.
T Consensus 6 ~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (114)
T cd05494 6 ERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRS 85 (114)
T ss_pred HHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccC
Confidence 3455666667777899999999999 78999999999999999999999984 245555667777777777777
Q ss_pred hhCCC
Q 008716 526 TYNSP 530 (556)
Q Consensus 526 ~YN~p 530 (556)
.+|..
T Consensus 86 ~~~~~ 90 (114)
T cd05494 86 PSNIY 90 (114)
T ss_pred ccccc
Confidence 77664
No 52
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.14 E-value=2.4e-10 Score=128.63 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=86.5
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcC
Q 008716 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (556)
Q Consensus 254 ~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqG 333 (556)
...+++..+|+|||++++.... ...+||..++|.|.|||||||+.||+++++++++ .++..+.+. ..+..||+|+|
T Consensus 503 ~~~~Va~~~g~IVG~~~l~~~~-~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~-~g~~~i~l~--~~a~~FYek~G 578 (614)
T PRK12308 503 GSFAVAEHHGEVTGCASLYIYD-SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQ-MAIKKVFVL--TRVPEFFMKQG 578 (614)
T ss_pred CcEEEEEECCEEEEEEEEEEcC-CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEe--eCcHHHHHHCC
Confidence 4556777889999988876543 3458999999999999999999999999999998 788876654 34689999999
Q ss_pred CccccccccceEeeeeccCCCceeEeeeeCCCCCccchhHH
Q 008716 334 FTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTM 374 (556)
Q Consensus 334 Ftk~i~l~~~~w~G~IKdY~gatLM~C~l~p~i~y~~~~~~ 374 (556)
|+. .| ..+++..++|.|.+||.=--|+...|
T Consensus 579 F~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (614)
T PRK12308 579 FSP---------TS-KSLLPEKVLKDCDQCPRQHACDEVAL 609 (614)
T ss_pred CEE---------CC-cccCChHHHHhhccCCCccCCChHHh
Confidence 975 33 33677899999999998877765444
No 53
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.14 E-value=4e-10 Score=106.81 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=65.9
Q ss_pred CCcEEEEE-ECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhh
Q 008716 253 SHKSVMVI-RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIK 331 (556)
Q Consensus 253 ~~~~~vl~-~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkK 331 (556)
....+++. .+|++||.+++.... ..+++|..++|+|++||+|||++||++++++|++ .++..+... ..++.||+|
T Consensus 44 ~~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~-~g~~~l~~~--~~~~~fY~k 119 (169)
T PRK07922 44 VQEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARE-LGLSRVFVL--TFEVEFFAR 119 (169)
T ss_pred cCcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHH-cCCCEEEEE--eccHHHHHH
Confidence 34566777 788999988776543 4568999999999999999999999999999998 888877654 235899999
Q ss_pred cCCcc
Q 008716 332 QGFTK 336 (556)
Q Consensus 332 qGFtk 336 (556)
+||..
T Consensus 120 ~GF~~ 124 (169)
T PRK07922 120 HGFVE 124 (169)
T ss_pred CCCEE
Confidence 99964
No 54
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.12 E-value=8.9e-10 Score=97.17 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=64.7
Q ss_pred CCcEEEEEECCEEEEEEEEeee----cC--CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcch
Q 008716 253 SHKSVMVIRGNVVVGGITYRPY----VS--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAV 326 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f----~~--~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai 326 (556)
.+..+++.++|+|||.+++.++ .. -..+.|.-+||.|++||||+|++||.++.+++++ .++..+++++ ...
T Consensus 40 ~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~-~g~~~~~l~~--~~~ 116 (127)
T PF13527_consen 40 PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARE-RGVPFIFLFP--SSP 116 (127)
T ss_dssp TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TT-SEEEEE---SSH
T ss_pred cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCCEEEEec--CCh
Confidence 3567888899999998876554 11 2357888899999999999999999999999998 7888888886 458
Q ss_pred hhhhhcCCc
Q 008716 327 GYFIKQGFT 335 (556)
Q Consensus 327 ~FYkKqGFt 335 (556)
.||+|+||.
T Consensus 117 ~~Y~~~G~~ 125 (127)
T PF13527_consen 117 PFYRRFGFE 125 (127)
T ss_dssp HHHHHTTEE
T ss_pred hhhhcCCCE
Confidence 999999996
No 55
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.12 E-value=7.6e-10 Score=100.77 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=83.5
Q ss_pred CCeEEEEeeCCChhhHHHHHHHHHHHHhh--hCCCCcH-HHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecC---CceE
Q 008716 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFAR--QLPNMPK-EYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVS---QKFG 280 (556)
Q Consensus 207 g~i~f~~~~nd~~~~~~~~L~~lkniF~~--qLp~MPk-eYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~---~~f~ 280 (556)
+.|.|+-++-++.+....|+... .+|.. ..|.... .+..++.-+.....+++..+|++||.+++..... ....
T Consensus 2 ~~i~lr~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~ 80 (162)
T PRK10140 2 SEIVIRHAETRDYEAIRQIHAQP-EVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVA 80 (162)
T ss_pred CccEEEecchhhHHHHHHHHhCc-ccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEE
Confidence 35677766555544444444321 12221 2333333 4444433223445567767899999998865421 2234
Q ss_pred EEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE--EEcc-CCcchhhhhhcCCccccccccc
Q 008716 281 EIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYA-DNNAVGYFIKQGFTKEIYLEKD 343 (556)
Q Consensus 281 EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l--lt~a-D~~Ai~FYkKqGFtk~i~l~~~ 343 (556)
|+ -++|.|++||||||+.||+++++++++..++..+ .+.. +..|+.||+|+||+..-.++..
T Consensus 81 ~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~ 145 (162)
T PRK10140 81 DF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKY 145 (162)
T ss_pred EE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccc
Confidence 44 3799999999999999999999999863454443 2233 4558999999999874444433
No 56
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.10 E-value=5.9e-10 Score=103.14 Aligned_cols=96 Identities=21% Similarity=0.320 Sum_probs=70.6
Q ss_pred CcHHHHHHHhhcCCCcEEEEEE---CC----EEEEEEEEeeecCC----ceEEEEEEeecCCCcccChHHHHHHHHHHHH
Q 008716 240 MPKEYIVRLVMDRSHKSVMVIR---GN----VVVGGITYRPYVSQ----KFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (556)
Q Consensus 240 MPkeYI~Rlv~D~~~~~~vl~~---~g----~VIGGI~~r~f~~~----~f~EI~flAV~~~~QgKGyGs~LM~~lke~a 308 (556)
-+..++...+-+.....++... ++ +++|.+..+..... ..++|..+||+|+|||+|||++||.++.+.+
T Consensus 41 ~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~ 120 (177)
T COG0456 41 WSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERL 120 (177)
T ss_pred chHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHH
Confidence 3556777666555555566555 23 59998888654332 1589999999999999999999999999999
Q ss_pred HhcCCc-eE--EEE-ccCCcchhhhhhcCCcc
Q 008716 309 RDVDGL-TH--FLT-YADNNAVGYFIKQGFTK 336 (556)
Q Consensus 309 r~~~gi-~~--llt-~aD~~Ai~FYkKqGFtk 336 (556)
++ .+. .. +.+ ..|..|++||+|.||.+
T Consensus 121 ~~-~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~ 151 (177)
T COG0456 121 RE-RGLADKIVLEVRESNEAAIGLYRKLGFEV 151 (177)
T ss_pred Hh-cCCCceEEEEEecCChHHHHHHHHcCCEE
Confidence 87 443 22 223 33445999999999975
No 57
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.09 E-value=4.4e-10 Score=121.30 Aligned_cols=101 Identities=25% Similarity=0.484 Sum_probs=78.8
Q ss_pred HHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEcc
Q 008716 242 KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA 321 (556)
Q Consensus 242 keYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~a 321 (556)
.+++.+-+ ...+++..+|++||++.+.++.....+||..++|.|+|||+|+|++||++++++|++ .++..+++..
T Consensus 314 ~~~l~~~~----~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~-~G~~~l~v~~ 388 (429)
T TIGR01890 314 REYLEREI----SEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQ-MGISRLFVLT 388 (429)
T ss_pred HHHHHhhc----CcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEee
Confidence 45554332 344566678999999988887666678999999999999999999999999999998 7877654443
Q ss_pred CCcchhhhhhcCCccc--cccccceEeee
Q 008716 322 DNNAVGYFIKQGFTKE--IYLEKDRWQGY 348 (556)
Q Consensus 322 D~~Ai~FYkKqGFtk~--i~l~~~~w~G~ 348 (556)
.++..||+|+||+.. ..+|..+|..|
T Consensus 389 -~~a~~fY~k~GF~~~g~~~l~~~~~~~~ 416 (429)
T TIGR01890 389 -TRTGHWFRERGFQTASVDELPEARRKLY 416 (429)
T ss_pred -cchHHHHHHCCCEECChhhCCHHHHHHh
Confidence 457899999999654 56777776644
No 58
>PRK10314 putative acyltransferase; Provisional
Probab=99.08 E-value=3.7e-10 Score=105.60 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHhhh--CCCCcHHHHHHHhhc--CCCcEEEEEECCEEEEEEEEeeecC-CceEEEEEEeecCCCcc
Q 008716 219 IDEHMVWLIGLKNIFARQ--LPNMPKEYIVRLVMD--RSHKSVMVIRGNVVVGGITYRPYVS-QKFGEIAFCAITADEQV 293 (556)
Q Consensus 219 ~~~~~~~L~~lkniF~~q--Lp~MPkeYI~Rlv~D--~~~~~~vl~~~g~VIGGI~~r~f~~-~~f~EI~flAV~~~~Qg 293 (556)
.++.-.++.-=..||-.. .|. + ++ .- .| +....+++..+|++||.+.+.+... ...++|--++|.+++||
T Consensus 14 ~~~~~~~~~lR~~VF~~eq~~~~-~-e~--D~-~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG 88 (153)
T PRK10314 14 VSQLYALLQLRCAVFVVEQNCPY-Q-DI--DG-DDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRG 88 (153)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCc-c-cc--CC-CCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhC
Confidence 344445555556777543 341 1 21 01 12 2345566677899999877665422 23578999999999999
Q ss_pred cChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 294 KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 294 KGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
+|||++||+++.+++++..+...+.+.+...|.+||+|+||..
T Consensus 89 ~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~ 131 (153)
T PRK10314 89 EKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIP 131 (153)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEE
Confidence 9999999999999998734566677777778999999999965
No 59
>PHA00673 acetyltransferase domain containing protein
Probab=99.07 E-value=1.6e-09 Score=102.57 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=77.7
Q ss_pred HHHHHHhhcCCCcEEEEEECCEEEEEEEEeeec-----CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 243 EYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYV-----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 243 eYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~-----~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
..+.++.-|++...+++..+|+|||.+.+...+ ....+.|.++.|++++||+|||++||++++++||+ .|+..+
T Consensus 44 ~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~-~Gc~~l 122 (154)
T PHA00673 44 HAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARD-LGATGL 122 (154)
T ss_pred HHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHH-CCCCEE
Confidence 446788889999999999999999977654432 34567899999999999999999999999999998 788877
Q ss_pred EEcc--CCcchhhhhhcCCcc
Q 008716 318 LTYA--DNNAVGYFIKQGFTK 336 (556)
Q Consensus 318 lt~a--D~~Ai~FYkKqGFtk 336 (556)
...+ ..+.+.||.++|+..
T Consensus 123 yis~~p~~~tv~fy~~~g~~~ 143 (154)
T PHA00673 123 YVSGPTEGRLVQLLPAAGYRE 143 (154)
T ss_pred EEecCCCccchHHHHhCCchh
Confidence 6644 466899999999964
No 60
>PRK13688 hypothetical protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=102.42 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhCCCCcH-HHHHHHhhc--CCCcEEEEEECCEEEEEEEEeee---------cCCceEEEEEEeecCCCcc
Q 008716 226 LIGLKNIFARQLPNMPK-EYIVRLVMD--RSHKSVMVIRGNVVVGGITYRPY---------VSQKFGEIAFCAITADEQV 293 (556)
Q Consensus 226 L~~lkniF~~qLp~MPk-eYI~Rlv~D--~~~~~~vl~~~g~VIGGI~~r~f---------~~~~f~EI~flAV~~~~Qg 293 (556)
|..+|-+...+.-.++. .-|...+|. .....+++..++++||++.+... .....++|..++|.|++||
T Consensus 14 ~~~~~~~~~~~~~dl~~l~~l~~~~f~~~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rg 93 (156)
T PRK13688 14 LEEFKKFREFGNQELSMLEELQANIIENDSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQN 93 (156)
T ss_pred HHHHHHHHHhcHHHHHHHHhhhhhEeecCCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcC
Confidence 44555554444444444 334444444 45666778888999997765321 1245689999999999999
Q ss_pred cChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 294 KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 294 KGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
||||++||+++++ .++. +.+.+.+.|..||+|+||+.
T Consensus 94 kGiG~~Ll~~a~~-----~~~~-~~~~~~~~a~~FY~k~GF~~ 130 (156)
T PRK13688 94 RGYGEMLVDFAKS-----FQLP-IKTIARNKSKDFWLKLGFTP 130 (156)
T ss_pred CCHHHHHHHHHHH-----hCCe-EEEEeccchHHHHHhCCCEE
Confidence 9999999986543 3333 33445678999999999975
No 61
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.02 E-value=4.4e-10 Score=131.22 Aligned_cols=99 Identities=35% Similarity=0.573 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008716 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pd 531 (556)
+..+++.++..++..+....|..||++.++|||+++|++||||.||+.+++++. |.++++|.+|+.+|..||+.||.-+
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~-y~tle~ieed~~l~~~nc~~yn~~d 644 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGA-YSTLEPIEEDVNLIVSNCMEYNAKD 644 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccc-hhhhhHHHHhHhHhHhHHHHhhccC
Confidence 456677788888888899999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 008716 532 TIYYKCATRHVDTINIVFVF 551 (556)
Q Consensus 532 S~~~k~A~~Lek~Fe~~lk~ 551 (556)
+.+|+.|.++++.....+..
T Consensus 645 tv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 645 TVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred eehHhhhHHHHhhhhhHHHh
Confidence 99999999999988777653
No 62
>PLN02825 amino-acid N-acetyltransferase
Probab=99.01 E-value=2e-09 Score=118.93 Aligned_cols=100 Identities=21% Similarity=0.419 Sum_probs=78.8
Q ss_pred CCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 238 PNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 238 p~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
.....+.+.+.+ ...+++..+|+|||++.+.++.....+||..+||+|+|||+|+|++||++++++|++ .|+..+
T Consensus 395 v~rs~e~le~ei----~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~-~G~~~L 469 (515)
T PLN02825 395 VRRTDEELLRAL----DSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAAS-LGLEKL 469 (515)
T ss_pred cCCCHHHHHhcC----CcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEE
Confidence 444556665543 346677789999998887777766779999999999999999999999999999998 788877
Q ss_pred EEccCCcchhhhhhcCCcc--ccccccc
Q 008716 318 LTYADNNAVGYFIKQGFTK--EIYLEKD 343 (556)
Q Consensus 318 lt~aD~~Ai~FYkKqGFtk--~i~l~~~ 343 (556)
+... ..|..||+|+||.. -..||..
T Consensus 470 ~Llt-t~a~~fY~k~GF~~~~~~~lp~~ 496 (515)
T PLN02825 470 FLLT-TRTADWFVRRGFSECSIESLPEA 496 (515)
T ss_pred EEEe-CcHHHHHHHCCCEEeChhhCCHH
Confidence 6544 56899999999954 2345544
No 63
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.00 E-value=1.2e-09 Score=104.85 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=61.8
Q ss_pred EECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEc--cCC-cchhhhhhcCCcc
Q 008716 260 IRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTY--ADN-NAVGYFIKQGFTK 336 (556)
Q Consensus 260 ~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~--aD~-~Ai~FYkKqGFtk 336 (556)
..+|++||.|.+..+.. ...+|.+++|.|++||||||+.||.+++++|++ .|+..+.+. .+| .|+.||+|+||+.
T Consensus 105 ~~~g~iiG~i~l~~~~~-~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~-~g~~~I~l~v~~~N~~A~~~Y~klGF~~ 182 (191)
T TIGR02382 105 DASGDPRGYVTLRELND-TDARIGLLAVFPGAQSRGIGAELMQTALNWCYA-RGLTRLRVATQMGNTAALRLYIRSGANI 182 (191)
T ss_pred ccCCeEEEEEEEEecCC-CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCHHHHHHHHHcCCcc
Confidence 34789999998876643 347899999999999999999999999999997 787765543 344 4899999999974
No 64
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.00 E-value=3.4e-09 Score=96.42 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=59.5
Q ss_pred EEEEEE--CCEEEEEEEEeee---c--CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhh
Q 008716 256 SVMVIR--GNVVVGGITYRPY---V--SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGY 328 (556)
Q Consensus 256 ~~vl~~--~g~VIGGI~~r~f---~--~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~F 328 (556)
.+++.. +|+|||.+.+... . ...+..|..++|.++|||||||+.||++++++|++ .++..++.........|
T Consensus 55 ~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~-~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 55 ICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARS-AGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeccccHHH
Confidence 344444 5899998765321 1 12345677799999999999999999999999997 78887665443333579
Q ss_pred hhhcCCcc
Q 008716 329 FIKQGFTK 336 (556)
Q Consensus 329 YkKqGFtk 336 (556)
|+|+||..
T Consensus 134 y~k~GF~~ 141 (150)
T PLN02706 134 YEKCGYVR 141 (150)
T ss_pred HHHCcCEE
Confidence 99999974
No 65
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.99 E-value=3.1e-10 Score=132.45 Aligned_cols=97 Identities=31% Similarity=0.603 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008716 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (556)
Q Consensus 454 ~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (556)
.++-.++.++.+-+.+|||++||+++.+|+||.+|++||||.+|.+++...+ |.+..+|.+|+++|+.||..||+.++.
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~-y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHK-YDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccc-cccHHHHhhhhHhhcccceeecCcccc
Confidence 4566677788888999999999999999999999999999999999999988 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008716 534 YYKCATRHVDTINIVFVF 551 (556)
Q Consensus 534 ~~k~A~~Lek~Fe~~lk~ 551 (556)
|.+-|+++-++....+.+
T Consensus 1464 y~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLLE 1481 (1563)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 999998887777666554
No 66
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.98 E-value=4.3e-10 Score=101.78 Aligned_cols=42 Identities=33% Similarity=0.540 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 008716 490 DPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDT 532 (556)
Q Consensus 490 ~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS 532 (556)
.||||+||++||.++ ||.++++|++|++|||.||+.||.++.
T Consensus 63 y~MDL~tIe~RL~ng-~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNG-YYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999986 589999999999999999999998744
No 67
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.98 E-value=2.9e-09 Score=96.68 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=71.4
Q ss_pred EEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE---ccCCcchhhhhhc
Q 008716 256 SVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT---YADNNAVGYFIKQ 332 (556)
Q Consensus 256 ~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt---~aD~~Ai~FYkKq 332 (556)
.+++..+|++||.+++..... .+++..++|.|++||+|||+.||.++++.+++ .++..+.. ..+..|+.||+|+
T Consensus 42 ~~~~~~~~~~vG~~~~~~~~~--~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~a~~~y~k~ 118 (146)
T PRK09491 42 NLKLTVNGQMAAFAITQVVLD--EATLFNIAVDPDYQRQGLGRALLEHLIDELEK-RGVATLWLEVRASNAAAIALYESL 118 (146)
T ss_pred EEEEEECCeEEEEEEEEeecC--ceEEEEEEECHHHccCCHHHHHHHHHHHHHHH-CCCcEEEEEEccCCHHHHHHHHHc
Confidence 345567899999998876543 36777899999999999999999999999987 77765543 2344589999999
Q ss_pred CCccccccccceEeeeeccCCCceeEee
Q 008716 333 GFTKEIYLEKDRWQGYIKDYDGGILMEC 360 (556)
Q Consensus 333 GFtk~i~l~~~~w~G~IKdY~gatLM~C 360 (556)
||...-.+++. |... ..|.+..+|+-
T Consensus 119 Gf~~~~~~~~~-~~~~-~~~~d~~~~~~ 144 (146)
T PRK09491 119 GFNEVTIRRNY-YPTA-DGREDAIIMAL 144 (146)
T ss_pred CCEEeeeeecc-ccCC-CCceeEEEEec
Confidence 99753333222 2111 12666667763
No 68
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.97 E-value=3.1e-09 Score=96.64 Aligned_cols=97 Identities=20% Similarity=0.418 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCCcEEEEEE-CCEEEEEEEEeeec-CCceEEEEEEeecCCCcccChHHHHHHHHHHHH-HhcCCceEEEE
Q 008716 243 EYIVRLVMDRSHKSVMVIR-GNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHA-RDVDGLTHFLT 319 (556)
Q Consensus 243 eYI~Rlv~D~~~~~~vl~~-~g~VIGGI~~r~f~-~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~a-r~~~gi~~llt 319 (556)
.+|..++.+.+...+++.. +|++||.+.++.+. ....+++. +.|.+++|++|+|+.|+.+++++| ++ .++..+..
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~-~~~~~i~~ 116 (155)
T PF13420_consen 39 RWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKE-LGIHKIYL 116 (155)
T ss_dssp HHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HH-TT-CEEEE
T ss_pred HHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhc-cCeEEEEE
Confidence 4445544445677777777 89999999888653 34556666 455599999999999999999999 76 88887653
Q ss_pred --cc-CCcchhhhhhcCCccccccc
Q 008716 320 --YA-DNNAVGYFIKQGFTKEIYLE 341 (556)
Q Consensus 320 --~a-D~~Ai~FYkKqGFtk~i~l~ 341 (556)
.+ +..|+.||+|+||+..-.++
T Consensus 117 ~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 117 EVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp EEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred EEecCCHHHHHHHHhCCCEEEEEEe
Confidence 33 34489999999998744333
No 69
>PRK10514 putative acetyltransferase; Provisional
Probab=98.97 E-value=9.3e-09 Score=92.69 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=55.8
Q ss_pred CcEEEEE-ECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhc
Q 008716 254 HKSVMVI-RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (556)
Q Consensus 254 ~~~~vl~-~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKq 332 (556)
...++++ .+|++||.+++.. .+|..++|.|++||||||+.||+++.+.+++ +...+...+..|++||+|+
T Consensus 49 ~~~~~~~~~~~~~iG~~~~~~------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~---i~~~v~~~N~~a~~~yek~ 119 (145)
T PRK10514 49 APLWVAVDERDQPVGFMLLSG------GHMEALFVDPDVRGCGVGRMLVEHALSLHPE---LTTDVNEQNEQAVGFYKKM 119 (145)
T ss_pred CceEEEEecCCcEEEEEEEec------CcEeEEEECHHhccCCHHHHHHHHHHHhccc---cEEEeecCCHHHHHHHHHC
Confidence 3344554 4789999888642 2455689999999999999999999997643 3333444455699999999
Q ss_pred CCcc
Q 008716 333 GFTK 336 (556)
Q Consensus 333 GFtk 336 (556)
||+.
T Consensus 120 Gf~~ 123 (145)
T PRK10514 120 GFKV 123 (145)
T ss_pred CCEE
Confidence 9976
No 70
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.94 E-value=4e-09 Score=114.13 Aligned_cols=90 Identities=27% Similarity=0.502 Sum_probs=72.5
Q ss_pred cEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCC
Q 008716 255 KSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (556)
Q Consensus 255 ~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGF 334 (556)
..+++..++++||++++..+.....++|..++|.|+|||+|+|++||++++++|++ .++..+.+.. ..|+.||+|+||
T Consensus 335 ~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~-~g~~~l~l~~-~~a~~fY~k~GF 412 (441)
T PRK05279 335 KFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQ-LGLKRLFVLT-TRTAHWFLERGF 412 (441)
T ss_pred cEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEec-chHHHHHHHCcC
Confidence 45677788999998877776555678999999999999999999999999999998 7887765433 568999999999
Q ss_pred ccc--cccccceEe
Q 008716 335 TKE--IYLEKDRWQ 346 (556)
Q Consensus 335 tk~--i~l~~~~w~ 346 (556)
+.. ..+|..+|.
T Consensus 413 ~~~g~~~~~~~~~~ 426 (441)
T PRK05279 413 VPVDVDDLPEAKRQ 426 (441)
T ss_pred EECChhhCcHHHHH
Confidence 643 355665544
No 71
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.90 E-value=3.4e-09 Score=109.92 Aligned_cols=72 Identities=14% Similarity=0.290 Sum_probs=61.7
Q ss_pred EEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 258 MVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 258 vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
+...+|+|||.+.+ +. .+|..+||.|+|||+|+|++||+++++++++ .|+.++.++++..+.+||+|+||+.
T Consensus 10 v~~~~~~iVG~~~l--~~----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~-~g~~~i~L~t~~~~~~fYek~GF~~ 81 (297)
T cd02169 10 IFDDAGELIATGSI--AG----NVLKCVAVCPKYQGEGLALKIVSELINKAYE-EGIFHLFLFTKPKNAKFFRGLGFKE 81 (297)
T ss_pred EEEECCEEEEEEEe--cc----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEcccHHHHHHHCCCEE
Confidence 33456999996544 21 3688999999999999999999999999998 8999988888888999999999975
No 72
>PRK09831 putative acyltransferase; Provisional
Probab=98.89 E-value=4.9e-09 Score=95.92 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhc
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKq 332 (556)
....+++..+|++||.+++.. ..|..+.|.|++||||||++||+++++.++. .. +.++..|++||+|+
T Consensus 52 ~~~~~v~~~~~~iiG~~~~~~------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~----l~--v~~~~~a~~~Y~k~ 119 (147)
T PRK09831 52 KSQVRVAVINAQPVGFITCIE------HYIDMLFVDPEYTRRGVASALLKPLIKSESE----LT--VDASITAKPFFERY 119 (147)
T ss_pred cCceEEEEECCEEEEEEEehh------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh----eE--eecchhhHHHHHHC
Confidence 345677778999999877632 2455688999999999999999999999875 12 23457799999999
Q ss_pred CCccccc
Q 008716 333 GFTKEIY 339 (556)
Q Consensus 333 GFtk~i~ 339 (556)
||...-.
T Consensus 120 Gf~~~g~ 126 (147)
T PRK09831 120 GFQTVKQ 126 (147)
T ss_pred CCEEeec
Confidence 9976433
No 73
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.88 E-value=1.3e-08 Score=97.62 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=63.7
Q ss_pred cEEEEE-ECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCC-cchhhhh
Q 008716 255 KSVMVI-RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADN-NAVGYFI 330 (556)
Q Consensus 255 ~~~vl~-~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~-~Ai~FYk 330 (556)
..+++. .+|++||.+++..... ...+|.+++|.|++||+|||+.||+++++++++ .++..+.. ..+| .|+.||+
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~-~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELND-TDARIGLLAVFPGAQGRGIGARLMQAALNWCQA-RGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCC-CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcHHHHHHHH
Confidence 445555 3579999998876533 347899999999999999999999999999997 78776644 3333 4899999
Q ss_pred hcCCcc
Q 008716 331 KQGFTK 336 (556)
Q Consensus 331 KqGFtk 336 (556)
|+||+.
T Consensus 180 k~Gf~~ 185 (194)
T PRK10975 180 RSGANI 185 (194)
T ss_pred HCCCeE
Confidence 999975
No 74
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.86 E-value=1.3e-08 Score=95.17 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred cEEEEE-ECCEEEEEEEEeeec-CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--cc-CCcchhhh
Q 008716 255 KSVMVI-RGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YA-DNNAVGYF 329 (556)
Q Consensus 255 ~~~vl~-~~g~VIGGI~~r~f~-~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~a-D~~Ai~FY 329 (556)
..+++. .+|++||.+++.+.. ....++|..++|.|++||+|||+.||.++++++++ .++..+.+ .. +..|+.||
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~-~~~~~i~~~v~~~N~~a~~ly 118 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVAC-ERVRHLETTITPDNQASRALF 118 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHh-CCCCEEEEEEcCCCHHHHHHH
Confidence 345555 357999988754432 23457888899999999999999999999999987 55555433 33 34579999
Q ss_pred hhcCCcc
Q 008716 330 IKQGFTK 336 (556)
Q Consensus 330 kKqGFtk 336 (556)
+|+||+.
T Consensus 119 ~k~G~~~ 125 (157)
T TIGR02406 119 KALARRR 125 (157)
T ss_pred HHhCccc
Confidence 9999965
No 75
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.86 E-value=3.6e-08 Score=89.59 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecC-CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-
Q 008716 242 KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT- 319 (556)
Q Consensus 242 keYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~-~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt- 319 (556)
..|+..+.-++.+..+++..+|++||.+++..+.. ...+++-.. +.+.+| ||||+.+|..+.++|.+..++..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~ 116 (156)
T TIGR03585 39 LHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLE 116 (156)
T ss_pred HHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEE
Confidence 35666666666666788888899999998876542 344666544 899999 99999999999999986457766544
Q ss_pred --ccCCcchhhhhhcCCcc
Q 008716 320 --YADNNAVGYFIKQGFTK 336 (556)
Q Consensus 320 --~aD~~Ai~FYkKqGFtk 336 (556)
..+..|+.||+|+||+.
T Consensus 117 v~~~N~~s~~~y~k~Gf~~ 135 (156)
T TIGR03585 117 VLEFNNKALKLYEKFGFER 135 (156)
T ss_pred EeccCHHHHHHHHHcCCeE
Confidence 23344799999999976
No 76
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=94.55 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred HHHhhcCCCcEEEEEECCEEEEEEEEeeec-CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEc---c
Q 008716 246 VRLVMDRSHKSVMVIRGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTY---A 321 (556)
Q Consensus 246 ~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~-~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~---a 321 (556)
.+...++....+++..+|++||.+.+.... ....+++. ++|.+.+||+|||+.|+..+++++.+..++..++.. .
T Consensus 49 ~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~ 127 (186)
T PRK15130 49 DKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKE 127 (186)
T ss_pred HHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccC
Confidence 344435555678888899999999776543 22346664 799999999999999999999999864677766543 2
Q ss_pred CCcchhhhhhcCCccc
Q 008716 322 DNNAVGYFIKQGFTKE 337 (556)
Q Consensus 322 D~~Ai~FYkKqGFtk~ 337 (556)
+..|+.||+|.||+..
T Consensus 128 N~~s~~~yek~GF~~~ 143 (186)
T PRK15130 128 NEKAIHIYRKLGFEVE 143 (186)
T ss_pred CHHHHHHHHHCCCEEE
Confidence 3358999999999863
No 77
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.83 E-value=1.8e-08 Score=106.17 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=72.4
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcC
Q 008716 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (556)
Q Consensus 254 ~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqG 333 (556)
...+++.++|+|||+..+ . .. .|..+||++++||+|+|++||.+|++++++ .|+.++++++...+..||+|+|
T Consensus 31 d~~vv~~~~~~lVg~g~l--~--g~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~-~G~~~l~l~Tk~~~~~fy~klG 103 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--A--GN--VIKCVAIDESLRGEGLALQLMTELENLAYE-LGRFHLFIFTKPEYAALFEYCG 103 (332)
T ss_pred CEEEEEEECCEEEEEEEE--e--cC--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEECchHHHHHHHcC
Confidence 456666788999996554 2 22 478899999999999999999999999998 8999999998877789999999
Q ss_pred CccccccccceEeeeeccCCCceeEeeee
Q 008716 334 FTKEIYLEKDRWQGYIKDYDGGILMECKI 362 (556)
Q Consensus 334 Ftk~i~l~~~~w~G~IKdY~gatLM~C~l 362 (556)
|.. .+..+++ +.+|+-.+
T Consensus 104 F~~---------i~~~~~~--~v~mE~~~ 121 (332)
T TIGR00124 104 FKT---------LAEAKDQ--GVLLENSA 121 (332)
T ss_pred CEE---------eeeecce--EEEEeccC
Confidence 965 3333332 56777654
No 78
>PHA01807 hypothetical protein
Probab=98.82 E-value=4.1e-08 Score=92.78 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhhCCCC-----cHHHHHHH---hhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEE---EeecCCC
Q 008716 223 MVWLIGLKNIFARQLPNM-----PKEYIVRL---VMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAF---CAITADE 291 (556)
Q Consensus 223 ~~~L~~lkniF~~qLp~M-----PkeYI~Rl---v~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~f---lAV~~~~ 291 (556)
...+..|..-+.+++|.. ..+.+.+. +.+..+..+++..+|++||.+++.........++.. +.|.|++
T Consensus 14 ~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~ 93 (153)
T PHA01807 14 PSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEY 93 (153)
T ss_pred HHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHH
Confidence 334445555556677874 13333333 334556667777899999998886554333345443 5899999
Q ss_pred cccChHHHHHHHHHHHHHhcCCceEEEEcc---CCcchhhhhhc
Q 008716 292 QVKGYGTRLMNHLKQHARDVDGLTHFLTYA---DNNAVGYFIKQ 332 (556)
Q Consensus 292 QgKGyGs~LM~~lke~ar~~~gi~~llt~a---D~~Ai~FYkKq 332 (556)
||+|||++||.+++++|++ .++..++... +..|+.||++-
T Consensus 94 RG~GiG~~Ll~~~~~~Ar~-~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 94 RNAGVAREFLRELIRLAGE-GNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred cCCCHHHHHHHHHHHHHHH-CCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999998 6766544322 23389999984
No 79
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.81 E-value=7.9e-09 Score=115.17 Aligned_cols=100 Identities=25% Similarity=0.418 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 449 QKHLTAFMRSLLKSMHDH--VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 449 ~~~L~~~l~~IL~~L~~~--~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
...++.+|..+++.+-.. .....|.+.++..+.|+||.+|..||+|..|++|+..++ |.+.+.|..|+.+|+.||+.
T Consensus 54 ~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~-y~~~~~f~~D~~lm~ena~~ 132 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGR-YKRLSFFQLDFLLMTENARL 132 (629)
T ss_pred HHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHH
Confidence 334444444444443322 345679999999999999999999999999999999999 79999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Q 008716 527 YNSPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~Fe~~l 549 (556)
||.+++.+|+++..|+..|....
T Consensus 133 ~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 133 YNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred hcCcchhhhhhhhhhhcchhhhh
Confidence 99999999999999999998754
No 80
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.78 E-value=1.1e-07 Score=86.93 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=81.8
Q ss_pred EEEee-CCChhhHHHHHHHHHHHHhhhCCC-C-cHHHHHHHh-hcCCCcEEEEEECCEEEEEEEEeee-----cCCceEE
Q 008716 211 FVCLS-NDGIDEHMVWLIGLKNIFARQLPN-M-PKEYIVRLV-MDRSHKSVMVIRGNVVVGGITYRPY-----VSQKFGE 281 (556)
Q Consensus 211 f~~~~-nd~~~~~~~~L~~lkniF~~qLp~-M-PkeYI~Rlv-~D~~~~~~vl~~~g~VIGGI~~r~f-----~~~~f~E 281 (556)
|+..+ .++-+..+.|+..-.-..-..... . ..+++.+.+ -++.+..+|+..+|++||++++... .......
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 34455 555566667775553332222221 1 124444444 3677788999999999999876431 1345677
Q ss_pred EEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEcc--CC-cchhhhhhcCCcc
Q 008716 282 IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA--DN-NAVGYFIKQGFTK 336 (556)
Q Consensus 282 I~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~a--D~-~Ai~FYkKqGFtk 336 (556)
|..++|.+++||||+|+.+|..+++++.+..++..+++.. +| .|+.+|+|.||.+
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~ 138 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRK 138 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EE
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEE
Confidence 8889999999999999999999999999733677766533 33 3899999999965
No 81
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.78 E-value=6e-09 Score=117.70 Aligned_cols=90 Identities=32% Similarity=0.466 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008716 447 SNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (556)
Q Consensus 447 ~~~~~L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~ 526 (556)
..+..+...+. .+..+|+|..+|+.+.+|+||.||+-||||+++.+|+..+. |.+.++|+.|+.+||.||+.
T Consensus 289 ~~~~~~~~~~~-------~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~-y~~~~~fv~d~~~~~~n~~~ 360 (720)
T KOG1472|consen 289 IGQEELYEAAE-------RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGP-YCSKEEFVNDLMLIWRNCEK 360 (720)
T ss_pred ccCHHHHHHhc-------ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhcccc-ccchhHHHHHHHHHHhcchh
Confidence 34455555555 48899999999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 008716 527 YNSPDTIYYKCATRHVDT 544 (556)
Q Consensus 527 YN~pdS~~~k~A~~Lek~ 544 (556)
||...+.....-..+.+-
T Consensus 361 ~n~ee~~~~~~~~vv~~~ 378 (720)
T KOG1472|consen 361 YNSEESHGLIEFAVIMNS 378 (720)
T ss_pred hccccchhhhhhhhhhcc
Confidence 999877655544444333
No 82
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.76 E-value=7e-08 Score=97.50 Aligned_cols=112 Identities=12% Similarity=0.122 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHhhh--CCCCcHHHHHHHhhcC---CCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCccc
Q 008716 220 DEHMVWLIGLKNIFARQ--LPNMPKEYIVRLVMDR---SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVK 294 (556)
Q Consensus 220 ~~~~~~L~~lkniF~~q--Lp~MPkeYI~Rlv~D~---~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgK 294 (556)
+..+.-+..|.+..... .+..+.+++..+ .++ ....+++..+|+|||.+.+...... ..+|..++|.|.+||+
T Consensus 8 ~~d~~~v~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~~l~V~p~~rg~ 85 (292)
T TIGR03448 8 ADLRRDVRELLAAATAVDGVAPVSEQVLRGL-REPGAGHTRHLVAVDSDPIVGYANLVPARGT-DPAMAELVVHPAHRRR 85 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHhhc-cccCCCCceEEEEEECCEEEEEEEEEcCCCC-cceEEEEEECHhhcCC
Confidence 33344444444433333 233555665443 332 1245666778999999887665332 3688899999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCceEEEEccC-CcchhhhhhcCCcc
Q 008716 295 GYGTRLMNHLKQHARDVDGLTHFLTYAD-NNAVGYFIKQGFTK 336 (556)
Q Consensus 295 GyGs~LM~~lke~ar~~~gi~~llt~aD-~~Ai~FYkKqGFtk 336 (556)
|||++||+++++.++. . ..+.+..+ ..|+.||+|+||+.
T Consensus 86 GiG~~Ll~~~~~~~~~--~-~~~~~~~~n~~a~~fy~~~Gf~~ 125 (292)
T TIGR03448 86 GIGRALIRALLAKGGG--R-LRVWAHGDLPAARALASRLGLVP 125 (292)
T ss_pred CHHHHHHHHHHHhccC--c-eEEEEcCCCHHHHHHHHHCCCEE
Confidence 9999999999998763 2 33444443 45899999999964
No 83
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.74 E-value=2.4e-07 Score=87.00 Aligned_cols=135 Identities=19% Similarity=0.281 Sum_probs=86.5
Q ss_pred CCeEEEEeeCCChhhHHHHHHHHHHHHhhhC--C-CCc-----HHHHHHHhh--cCCC-cEEEEEECCEEEEEEEEeeec
Q 008716 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQL--P-NMP-----KEYIVRLVM--DRSH-KSVMVIRGNVVVGGITYRPYV 275 (556)
Q Consensus 207 g~i~f~~~~nd~~~~~~~~L~~lkniF~~qL--p-~MP-----keYI~Rlv~--D~~~-~~~vl~~~g~VIGGI~~r~f~ 275 (556)
..|.++-++-++.+....|+..-+..+..-+ | .++ +++|.+..- +... ..+++..+|++||.+++..+.
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 3466776665555555555532222221111 1 111 466665432 2222 246766789999999877653
Q ss_pred -CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEE--EccCCc-chhhhhhcCCcccccccc
Q 008716 276 -SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFL--TYADNN-AVGYFIKQGFTKEIYLEK 342 (556)
Q Consensus 276 -~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~ll--t~aD~~-Ai~FYkKqGFtk~i~l~~ 342 (556)
....+||-+ .|.+++||||||+.++..+.+++.+..++..+. +..+|. +..+|+|+||+..-.+.+
T Consensus 89 ~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~ 158 (179)
T PRK10151 89 PLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQ 158 (179)
T ss_pred cCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEecc
Confidence 234578765 699999999999999999999998645666543 344554 799999999987544443
No 84
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=89.69 Aligned_cols=118 Identities=16% Similarity=0.232 Sum_probs=80.9
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhhcCCC-cEEEEEECCE-EEEEEEEeeecCC--ceEEEEEEeecCCCcccChHHHHHHH
Q 008716 228 GLKNIFARQLPNMPKEYIVRLVMDRSH-KSVMVIRGNV-VVGGITYRPYVSQ--KFGEIAFCAITADEQVKGYGTRLMNH 303 (556)
Q Consensus 228 ~lkniF~~qLp~MPkeYI~Rlv~D~~~-~~~vl~~~g~-VIGGI~~r~f~~~--~f~EI~flAV~~~~QgKGyGs~LM~~ 303 (556)
....+-.+.|++-=..|-.|-.--... ..|++.+++. -||.|....-... .-++|.-+||++++||+|||+.|...
T Consensus 29 ~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~ 108 (165)
T KOG3139|consen 29 DIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRK 108 (165)
T ss_pred HHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHH
Confidence 444555666665545555554323333 4444445443 4988865543222 34899999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccC---CcchhhhhhcCCccccccccceEe
Q 008716 304 LKQHARDVDGLTHFLTYAD---NNAVGYFIKQGFTKEIYLEKDRWQ 346 (556)
Q Consensus 304 lke~ar~~~gi~~llt~aD---~~Ai~FYkKqGFtk~i~l~~~~w~ 346 (556)
+++.++. .|...++..+. ..|.++|++.||...-.+.+-.|.
T Consensus 109 aId~m~~-~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYln 153 (165)
T KOG3139|consen 109 AIDAMRS-RGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLN 153 (165)
T ss_pred HHHHHHH-CCCcEEEEeccccchHHHHHHHhcCceEecceeEEEEC
Confidence 9999998 88888776443 459999999999764444444443
No 85
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.73 E-value=1.5e-07 Score=98.05 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=84.8
Q ss_pred eEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEE-E----CCEEEEEEEEeeecCCceEEEE
Q 008716 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-R----GNVVVGGITYRPYVSQKFGEIA 283 (556)
Q Consensus 209 i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~-~----~g~VIGGI~~r~f~~~~f~EI~ 283 (556)
+.|+..+-.+.+ .+.-|..--|.|...-.....+.|.+.+-++ ..+++. . ++.+||.+.++.- ...++|.
T Consensus 187 ~~Ir~a~~~Dl~-ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~gd~givG~~~~~~~--~~~~~I~ 261 (320)
T TIGR01686 187 LNISKNDEQNVQ-RVEELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRFGDSGIIGIFVFEKK--EGNLFID 261 (320)
T ss_pred EEEEECChhhhH-HHHHHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecCCCCceEEEEEEEec--CCcEEEE
Confidence 455544433333 3333444445565444567778888877554 344343 2 4679998887653 4557999
Q ss_pred EEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-c----cCCcchhhhhhcCCcc
Q 008716 284 FCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-Y----ADNNAVGYFIKQGFTK 336 (556)
Q Consensus 284 flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt-~----aD~~Ai~FYkKqGFtk 336 (556)
.++|++.+||+|+|+.||+++++.|++ .|+..+.. + .|..|..||+|+||+.
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~-~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~ 318 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALD-LGNHNARLYYRRTERNMPFLSFYEQIGFED 318 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHH-cCCCeEEEEEeeCCCchHHHHHHHHcCCcc
Confidence 999999999999999999999999998 78775433 2 2446999999999973
No 86
>PRK10562 putative acetyltransferase; Provisional
Probab=98.71 E-value=8e-08 Score=87.42 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhh
Q 008716 252 RSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIK 331 (556)
Q Consensus 252 ~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkK 331 (556)
+....+++..+|++||.+++... .+|..++|.+++||+|||+.||+++++.+.. +...+...+..|+.||+|
T Consensus 46 ~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~---~~~~v~~~N~~s~~~y~k 117 (145)
T PRK10562 46 PAAQTWVWEEDGKLLGFVSVLEG-----RFVGALFVAPKAVRRGIGKALMQHVQQRYPH---LSLEVYQKNQRAVNFYHA 117 (145)
T ss_pred CcccEEEEEECCEEEEEEEEeec-----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCe---EEEEEEcCChHHHHHHHH
Confidence 44456777788999999887432 2566689999999999999999999886543 333333445578999999
Q ss_pred cCCcc
Q 008716 332 QGFTK 336 (556)
Q Consensus 332 qGFtk 336 (556)
+||+.
T Consensus 118 ~Gf~~ 122 (145)
T PRK10562 118 QGFRI 122 (145)
T ss_pred CCCEE
Confidence 99975
No 87
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.69 E-value=2.1e-08 Score=117.60 Aligned_cols=98 Identities=26% Similarity=0.497 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008716 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (556)
Q Consensus 452 L~~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pd 531 (556)
+..++..+.+++...+...||..||+..++++||.||+.||||.++++.+.... |.+-++|+.|+.||++|..+||++.
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~-y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRL-YESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHH-HHHHHHHHHHhHHHhhchhhhcCch
Confidence 566788899999999999999999999999999999999999999999999866 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 008716 532 TIYYKCATRHVDTINIVFV 550 (556)
Q Consensus 532 S~~~k~A~~Lek~Fe~~lk 550 (556)
+.+...+..+-...-..|.
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999888776655544443
No 88
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.69 E-value=2.9e-07 Score=87.70 Aligned_cols=82 Identities=10% Similarity=0.128 Sum_probs=61.3
Q ss_pred CcEEEEEE--CCEEEEEEEEeeecC--CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCC-cch
Q 008716 254 HKSVMVIR--GNVVVGGITYRPYVS--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADN-NAV 326 (556)
Q Consensus 254 ~~~~vl~~--~g~VIGGI~~r~f~~--~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~-~Ai 326 (556)
...+++.. +|++||.|.+..+.. ...+||- ++|.+.+||||||+.++..+.+++.+..++..+.. ..+| .|+
T Consensus 75 ~~~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~ 153 (194)
T PRK10809 75 AFYFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSG 153 (194)
T ss_pred EEEEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHH
Confidence 34556543 579999998876542 2234554 68999999999999999999999987457776544 3334 489
Q ss_pred hhhhhcCCcc
Q 008716 327 GYFIKQGFTK 336 (556)
Q Consensus 327 ~FYkKqGFtk 336 (556)
.+|+|+||+.
T Consensus 154 ~l~ek~Gf~~ 163 (194)
T PRK10809 154 DLLARLGFEK 163 (194)
T ss_pred HHHHHCCCcE
Confidence 9999999975
No 89
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.68 E-value=1.5e-07 Score=105.13 Aligned_cols=109 Identities=16% Similarity=0.300 Sum_probs=74.7
Q ss_pred HHHHHHHHhhh--CCCCcHHHHHHHhhcCCCcEEEEEE--CCEEEEEEEEeee----c-CCceEEEEEEeecCCCcccCh
Q 008716 226 LIGLKNIFARQ--LPNMPKEYIVRLVMDRSHKSVMVIR--GNVVVGGITYRPY----V-SQKFGEIAFCAITADEQVKGY 296 (556)
Q Consensus 226 L~~lkniF~~q--Lp~MPkeYI~Rlv~D~~~~~~vl~~--~g~VIGGI~~r~f----~-~~~f~EI~flAV~~~~QgKGy 296 (556)
+..+..||..- .| -..+++.+...++....+++.. +|+|||.+++..+ . .....+|..++|.|+|||+||
T Consensus 94 ~~~I~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GI 172 (547)
T TIGR03103 94 VDAINRLYAARGMVP-VRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGV 172 (547)
T ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCH
Confidence 34444455442 22 2345555554455666666664 5899998864321 1 112368888999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEE--EccCC-cchhhhhhcCCcc
Q 008716 297 GTRLMNHLKQHARDVDGLTHFL--TYADN-NAVGYFIKQGFTK 336 (556)
Q Consensus 297 Gs~LM~~lke~ar~~~gi~~ll--t~aD~-~Ai~FYkKqGFtk 336 (556)
|++||+++++++++ .|+..+. +..+| .|+.||+|+||+.
T Consensus 173 G~~Ll~~l~e~a~~-~G~~~i~L~V~~~N~~Ai~fY~klGf~~ 214 (547)
T TIGR03103 173 GEALVRALAEHFQS-RGCAYMDLSVMHDNEQAIALYEKLGFRR 214 (547)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 99999999999998 7776543 23344 5899999999964
No 90
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.66 E-value=3.7e-09 Score=112.38 Aligned_cols=222 Identities=27% Similarity=0.325 Sum_probs=159.8
Q ss_pred CCceEEEEccCCcchhhhhhcCCccccccccceEeeeeccCCCceeEeeeeCCCCCccchhHHHHHHHHHHHHHHH----
Q 008716 312 DGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIR---- 387 (556)
Q Consensus 312 ~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~gatLM~C~l~p~i~y~~~~~~i~~Qk~al~~kir---- 387 (556)
..+....+++++.++..+.++++......-...|.+.+..++..+.++|.-.| |++..+..-|+.++=...+.+.
T Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~P-m~L~~i~kkl~~~~Y~s~eef~~D~~ 214 (371)
T COG5076 136 PKIEDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSP-MDLLTIQKKLKNGRYKSFEEFVSDLN 214 (371)
T ss_pred CcccchhHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecch-hhHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34566777888899999999999988888889999999999999999999999 9999888888766555444443
Q ss_pred hh-cccccccCCccccccccCCCccccCCCCCCcccccC-CCCCCCCCccccccccCCCCcccHHHHHHHHHHHHHHhhc
Q 008716 388 EL-SNCHIVYPGIDFQKKEAGVPKKIIKVEDIPGLREAG-WTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHD 465 (556)
Q Consensus 388 ~~-s~~hiVypGl~~~k~e~g~p~k~i~~~~IPGl~EaG-wtp~~~~~sr~r~~~~~~d~~~~~~~L~~~l~~IL~~L~~ 465 (556)
.+ ++|..- -+-+.+-- ...+....++..... |.+........... ..+.. .-..++.....
T Consensus 215 lM~~N~~~y-N~~~s~v~------~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~-------~~~~~i~~~~~ 277 (371)
T COG5076 215 LMFDNCKLY-NGPDSSVY------VDAKELEKYFLKLIEEIPEEMLELSIKPGR---EEREE-------RESVLITNSQA 277 (371)
T ss_pred HHHHhhhhc-cCCCcchh------hhhHHHHHHHHHHHHhccccchhhccCccc---ccccc-------chhhccccccc
Confidence 22 344432 22221100 111112223333333 33333222111100 00000 22333444467
Q ss_pred CCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 008716 466 HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTI 545 (556)
Q Consensus 466 ~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~F 545 (556)
+..+|+|.++++....|+|+++|..+|++++++.++..+ ||...+.|..|..++++||..||+....+++.+..+..++
T Consensus 278 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (371)
T COG5076 278 HVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNN-YYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFV 356 (371)
T ss_pred ccccccccccCCcccccchhhhhhcccccccchhhhhcc-cCCCccccccccchhhhcccccchhhhhhhhhccchhhhH
Confidence 788999999999999999999999999999999998875 5899999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008716 546 NIVFVFH 552 (556)
Q Consensus 546 e~~lk~~ 552 (556)
...+...
T Consensus 357 ~~~~~~~ 363 (371)
T COG5076 357 IKKTRLI 363 (371)
T ss_pred hhhhhhh
Confidence 8876643
No 91
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.60 E-value=5.6e-08 Score=111.95 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcC------CCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008716 454 AFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (556)
Q Consensus 454 ~~l~~IL~~L~~~------~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~Y 527 (556)
..|..|+....++ ..+..|...++..++||||++|++||++..|+++|.... |.+..+...|+.++|.|++.|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHK-YNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccc-cchHHHHHHHHHhhcchhhhh
Confidence 3467777666654 345789999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 008716 528 NSPDTIYYKCATRHVDTINIVFVFHL 553 (556)
Q Consensus 528 N~pdS~~~k~A~~Lek~Fe~~lk~~l 553 (556)
|..+|.+|..|..|+++|.....++.
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHh
Confidence 99999999999999999988877653
No 92
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.59 E-value=1.6e-07 Score=94.80 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=59.3
Q ss_pred EEEEEE--CCEEEEEEEEeeecC-CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccC-Ccchhhh
Q 008716 256 SVMVIR--GNVVVGGITYRPYVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YAD-NNAVGYF 329 (556)
Q Consensus 256 ~~vl~~--~g~VIGGI~~r~f~~-~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD-~~Ai~FY 329 (556)
.+++.. +|++||.+.+..... ....+|.-++|.|+|||||||+.||.++.+++++ .++..+.+ ..+ ..|+.||
T Consensus 200 ~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~-~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 200 LFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAA-RGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred eEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEeCCCHHHHHHH
Confidence 455555 589999765544322 2245666689999999999999999999999997 66665443 233 3589999
Q ss_pred hhcCCcc
Q 008716 330 IKQGFTK 336 (556)
Q Consensus 330 kKqGFtk 336 (556)
+|+||+.
T Consensus 279 ~k~GF~~ 285 (292)
T TIGR03448 279 EKLGFTV 285 (292)
T ss_pred HHcCCEE
Confidence 9999965
No 93
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.52 E-value=2e-07 Score=90.86 Aligned_cols=121 Identities=13% Similarity=0.257 Sum_probs=79.5
Q ss_pred CeEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCc-HHHHHHHhhcCCCcEEEEEECCEEEEEEEEeee--cCC-------
Q 008716 208 NLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMP-KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPY--VSQ------- 277 (556)
Q Consensus 208 ~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MP-keYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f--~~~------- 277 (556)
.+++.-++-+... .++.|-+.-+|.=. ..+-...+.......+++..+. .||+++.+.. ..+
T Consensus 16 ~~~l~~it~~nl~-------~~~~l~~~~fP~~y~~kfy~~~~~~~~~~~~A~~~~~-~v~a~~~k~~~~~~~~~r~~~~ 87 (187)
T KOG3138|consen 16 LIELRLITPNNLK-------QLKQLNEDIFPISYVDKFYPDVLSNGDLTQLAYYNEI-AVGAVACKLIKFVQNAKRLFGN 87 (187)
T ss_pred ceeeccCCcchHH-------HHHHHhccccCcchHHHHHHHHHhcCCHHHhhhhccc-cccceeeeehhhhhhhhhhhcc
Confidence 4666655444333 23333344444222 2333444444555556665555 5555555443 221
Q ss_pred ceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcC---CceEEEEccCCcchhhhhhcCCcc
Q 008716 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD---GLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 278 ~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~---gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
.+++|.++.|.+.||.+|||++||+++++++.+.. ++...+...|+.|+.||++.||+.
T Consensus 88 ~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~ 149 (187)
T KOG3138|consen 88 RVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEI 149 (187)
T ss_pred ceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceE
Confidence 15899999999999999999999999999998732 355667788899999999999976
No 94
>PRK01346 hypothetical protein; Provisional
Probab=98.52 E-value=1.2e-06 Score=93.41 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCcEEEEEECCEEEEEEEEeeec-----C--CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcc
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYV-----S--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA 325 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~-----~--~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~A 325 (556)
.+..+++..+|++||.+.+.++. . .....|..++|.|+|||+|+|++||.++++.+++ .|+..++....+
T Consensus 46 ~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~-~g~~~~~L~~~~-- 122 (411)
T PRK01346 46 PDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRE-RGEPVAALTASE-- 122 (411)
T ss_pred cCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-CCCcEEEEECCc--
Confidence 34567888889999988766542 1 1358899999999999999999999999999998 777766666444
Q ss_pred hhhhhhcCCcc
Q 008716 326 VGYFIKQGFTK 336 (556)
Q Consensus 326 i~FYkKqGFtk 336 (556)
..||+|+||..
T Consensus 123 ~~~Y~r~Gf~~ 133 (411)
T PRK01346 123 GGIYGRFGYGP 133 (411)
T ss_pred hhhHhhCCCee
Confidence 47999999954
No 95
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.47 E-value=7e-07 Score=86.07 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=67.1
Q ss_pred CCcEEEEEECCEEEEEEEEeeecC----CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhh
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYVS----QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGY 328 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~~----~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~F 328 (556)
...++|+.++|+|||.|.+-++.- ...+-+.-+||.|++||||||+.||.+.++.++. .|...+++..| ..|
T Consensus 45 ~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~-~G~~~v~vlGd---p~Y 120 (171)
T COG3153 45 LTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRL-AGASAVVVLGD---PTY 120 (171)
T ss_pred cceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHH-CCCCEEEEecC---ccc
Confidence 456788889999999998777532 2456777799999999999999999999999998 88888888754 669
Q ss_pred hhhcCCcc
Q 008716 329 FIKQGFTK 336 (556)
Q Consensus 329 YkKqGFtk 336 (556)
|.|.||+.
T Consensus 121 Y~rfGF~~ 128 (171)
T COG3153 121 YSRFGFEP 128 (171)
T ss_pred ccccCcEE
Confidence 99999953
No 96
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=1.7e-06 Score=83.34 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=74.7
Q ss_pred cEEEEEEC-CEEEEEEEEeeecCC---ceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCCc-chh
Q 008716 255 KSVMVIRG-NVVVGGITYRPYVSQ---KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVG 327 (556)
Q Consensus 255 ~~~vl~~~-g~VIGGI~~r~f~~~---~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~~-Ai~ 327 (556)
.-+|+..+ |+|+|..++.+|..+ ...--..+=|.++.||||+|++||..|+++++. .|+..++. ..+|. .++
T Consensus 53 p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~-~g~~~lva~I~~~n~aSi~ 131 (169)
T COG1247 53 PVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARA-LGVRELVAGIESDNLASIA 131 (169)
T ss_pred eEEEEEcCCCeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHh-CCeEEEEEEEcCCCcHhHH
Confidence 45566555 899999987776432 222223477999999999999999999999998 88877654 33444 599
Q ss_pred hhhhcCCccccccccceEeeeecc-CCCceeEeeeeC
Q 008716 328 YFIKQGFTKEIYLEKDRWQGYIKD-YDGGILMECKID 363 (556)
Q Consensus 328 FYkKqGFtk~i~l~~~~w~G~IKd-Y~gatLM~C~l~ 363 (556)
|++|.||++--.+++. |+.-+ +-+.++|++.+.
T Consensus 132 lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~ 165 (169)
T COG1247 132 LHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLE 165 (169)
T ss_pred HHHHCCCEEecccccc---ccccceEEeeeeeehhhc
Confidence 9999999886666654 21111 135667777654
No 97
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.41 E-value=1.6e-06 Score=80.50 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=81.1
Q ss_pred CeEEEEeeCCChhh-HHHHHHHH---HHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEE--CCEEEEEEEEeeecCCce--
Q 008716 208 NLKFVCLSNDGIDE-HMVWLIGL---KNIFARQLPNMPKEYIVRLVMDRSHKSVMVIR--GNVVVGGITYRPYVSQKF-- 279 (556)
Q Consensus 208 ~i~f~~~~nd~~~~-~~~~L~~l---kniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~--~g~VIGGI~~r~f~~~~f-- 279 (556)
...++-+.+++-.+ .+.+|..| =+|-+.|+- +.|-.---+-..+..+|+.+ .++|||..++-.- ..|
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~---krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE--~KfIh 80 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFE---KRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIE--RKFIH 80 (150)
T ss_pred ceEEeecccccccchHHHHHHHHhhccccCHHHHH---HHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEe--hhhhh
Confidence 36777778876554 44444444 333333311 11211111122355666654 3799997654331 222
Q ss_pred -----EEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 280 -----GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 280 -----~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
.-|.-++|++++||||+|+.|+..|.+.++. .|.+.+....+..-++||+||||+.
T Consensus 81 ~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~-lgcYKi~LdC~~~nv~FYeKcG~s~ 141 (150)
T KOG3396|consen 81 GCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKS-LGCYKIILDCDPKNVKFYEKCGYSN 141 (150)
T ss_pred cccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHh-cCcEEEEEecchhhhhHHHHcCccc
Confidence 3455688999999999999999999999998 8888887777777799999999975
No 98
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.33 E-value=1.2e-07 Score=107.59 Aligned_cols=91 Identities=36% Similarity=0.569 Sum_probs=82.7
Q ss_pred HhhcCCCCCCcccCCCCC--CCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 008716 462 SMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCAT 539 (556)
Q Consensus 462 ~L~~~~~a~pF~~PVd~~--evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~ 539 (556)
.+..|.++|+|..||+.. ..|+||.+|++|||+++|+.++++ .||....+-.+|+..+|.||..||.+...++.+++
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 345788999999999965 689999999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 008716 540 RHVDTINIVFVFHL 553 (556)
Q Consensus 540 ~Lek~Fe~~lk~~l 553 (556)
.+++.|.+.+..++
T Consensus 82 ~~~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMP 95 (640)
T ss_pred cchhhccccccccc
Confidence 99999877665543
No 99
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.29 E-value=3.5e-06 Score=82.11 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=65.0
Q ss_pred CcEEEEEECC-EEEEEEEEeeecCCc--eEEEEEEeecCCCcccChHHHHHHHHHHHHHhc--CCceEEEEccCCcchhh
Q 008716 254 HKSVMVIRGN-VVVGGITYRPYVSQK--FGEIAFCAITADEQVKGYGTRLMNHLKQHARDV--DGLTHFLTYADNNAVGY 328 (556)
Q Consensus 254 ~~~~vl~~~g-~VIGGI~~r~f~~~~--f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~--~gi~~llt~aD~~Ai~F 328 (556)
..=+++..++ ++||++.||.-.+.+ .+.+-.+-|.++|||||||+.||.+|...+... .+|..-|-..+..|++|
T Consensus 92 ~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~F 171 (202)
T KOG2488|consen 92 LRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGF 171 (202)
T ss_pred ceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHH
Confidence 3334444444 899999999876666 455555789999999999999999999888752 23333333445669999
Q ss_pred hhhcCCcccccccc
Q 008716 329 FIKQGFTKEIYLEK 342 (556)
Q Consensus 329 YkKqGFtk~i~l~~ 342 (556)
|++.||..+..=|.
T Consensus 172 y~~~gf~~~~~sp~ 185 (202)
T KOG2488|consen 172 YHRLGFVVDEESPC 185 (202)
T ss_pred HHHcCcccCCCCCc
Confidence 99999976555443
No 100
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.28 E-value=3.1e-06 Score=72.27 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=44.0
Q ss_pred EEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceE-EEEccC-CcchhhhhhcCCcc
Q 008716 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH-FLTYAD-NNAVGYFIKQGFTK 336 (556)
Q Consensus 280 ~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~-llt~aD-~~Ai~FYkKqGFtk 336 (556)
.+|..+.|.|++||||||+.|+.++.+.+.+ .+..- +.+..+ ..|+.||+|.||+.
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~-~g~~~~l~v~~~N~~s~~ly~klGf~~ 79 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLE-RGKTPFLYVDADNEASIRLYEKLGFRE 79 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TTSEEEEEEETT-HHHHHHHHHCT-EE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCcEEEEEECCCHHHHHHHHHcCCEE
Confidence 6888999999999999999999999988887 55443 334444 45899999999975
No 101
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.24 E-value=7.3e-06 Score=60.85 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=50.8
Q ss_pred EEEEECCEEEEEEEEeeec-CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE
Q 008716 257 VMVIRGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (556)
Q Consensus 257 ~vl~~~g~VIGGI~~r~f~-~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt 319 (556)
+++..++++||.+.+.... ....++|..++|.+++|++|+|++||.++.+++++ .++..+..
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 4555678999988877653 23568999999999999999999999999999997 77766653
No 102
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=98.22 E-value=3.4e-05 Score=73.05 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=87.4
Q ss_pred CCeEEEEeeCCChhhHHHHHHHHHHHHhhhCC-CCcHHHHHH-HhhcCCCcE--EEEEE--CCEEEEEEEEee-ec---C
Q 008716 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLP-NMPKEYIVR-LVMDRSHKS--VMVIR--GNVVVGGITYRP-YV---S 276 (556)
Q Consensus 207 g~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp-~MPkeYI~R-lv~D~~~~~--~vl~~--~g~VIGGI~~r~-f~---~ 276 (556)
+.++++.++-++.++-+.++-+|...-...-| ....+-+.+ +--|+.... .+.++ ++.|+|.+.|-. +. .
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~ 81 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLG 81 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccc
Confidence 56888888888888887777777654433332 223344444 222443333 22232 568888776544 22 2
Q ss_pred CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceE--EEE-ccCCcchhhhhhcCCcc
Q 008716 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH--FLT-YADNNAVGYFIKQGFTK 336 (556)
Q Consensus 277 ~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~--llt-~aD~~Ai~FYkKqGFtk 336 (556)
..-+.|.-+=|.|.|||||+|+.|+..+-+.|.+ .|... +++ --|.+|+.||+|.|++.
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~-~G~~rv~w~vldwN~rAi~lY~k~gaq~ 143 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADK-LGTPRVEWVVLDWNHRAILLYEKVGAQD 143 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHHH-cCCCcEEEEEeccchhHHHHHHHhCccc
Confidence 2347788889999999999999999999999997 56553 333 33566999999999975
No 103
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.21 E-value=7.1e-06 Score=69.20 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred EEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhc
Q 008716 257 VMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (556)
Q Consensus 257 ~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKq 332 (556)
|.+..+|+.+|.|.|+. ..+.+.|...-|.+++||||+|++||+.+.++|++ .+.+.+-++ .++..||+|+
T Consensus 2 F~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~-~~~kv~p~C--~y~~~~~~~h 72 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARE-NGLKVVPTC--SYVAKYFRRH 72 (78)
T ss_dssp EEEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHH-TT-EEEETS--HHHHHHHHH-
T ss_pred EEEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCEEEEEC--HHHHHHHHhC
Confidence 55667788999999976 56778999999999999999999999999999998 887777666 6678888875
No 104
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.20 E-value=8.7e-06 Score=72.30 Aligned_cols=80 Identities=26% Similarity=0.323 Sum_probs=59.7
Q ss_pred cEEEEEEC--CEEEEEEEEeee-cCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCCc-chhh
Q 008716 255 KSVMVIRG--NVVVGGITYRPY-VSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGY 328 (556)
Q Consensus 255 ~~~vl~~~--g~VIGGI~~r~f-~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~~-Ai~F 328 (556)
..+++... +++||.|.+... .....+||- +.|.+++||+|||+.++..+.+++.+..++..+.. ..+|. +..+
T Consensus 57 ~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~ 135 (142)
T PF13302_consen 57 YYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRL 135 (142)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHH
T ss_pred eEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHH
Confidence 33555543 579999988443 456779988 56888899999999999999999954477776544 34444 7999
Q ss_pred hhhcCCc
Q 008716 329 FIKQGFT 335 (556)
Q Consensus 329 YkKqGFt 335 (556)
++|.||+
T Consensus 136 ~~k~GF~ 142 (142)
T PF13302_consen 136 LEKLGFE 142 (142)
T ss_dssp HHHTT-E
T ss_pred HHHcCCC
Confidence 9999994
No 105
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.17 E-value=3.3e-07 Score=96.75 Aligned_cols=97 Identities=25% Similarity=0.288 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 008716 457 RSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYK 536 (556)
Q Consensus 457 ~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k 536 (556)
+.++.++-....-..|..||...-.|+|-+||+.|||+.||+.|++.+. |.+..+|..|.++|..|+..||..++.++.
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~-yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~ 103 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTR-YLVLSQMEFDRKLPDGNATLYNLHPTVPIV 103 (418)
T ss_pred HHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCcc-ceechhhhhhhcccccchhhhhcCCccccc
Confidence 3444444444444557778888899999999999999999999999865 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 008716 537 CATRHVDTINIVFVFHLL 554 (556)
Q Consensus 537 ~A~~Lek~Fe~~lk~~ll 554 (556)
.|.+|..+-...+++.++
T Consensus 104 aaKrL~~v~~~~~qe~~l 121 (418)
T KOG1828|consen 104 AAKRLCPVRLGMTQERLL 121 (418)
T ss_pred cccccchhhcchhhHHHH
Confidence 999999888777766543
No 106
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.16 E-value=5.3e-06 Score=92.33 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=61.9
Q ss_pred cEEEEEE---CCEEEEEEEEeeecCC-------ceEEEEEEe-----------ecCCCcccChHHHHHHHHHHHHHhcCC
Q 008716 255 KSVMVIR---GNVVVGGITYRPYVSQ-------KFGEIAFCA-----------ITADEQVKGYGTRLMNHLKQHARDVDG 313 (556)
Q Consensus 255 ~~~vl~~---~g~VIGGI~~r~f~~~-------~f~EI~flA-----------V~~~~QgKGyGs~LM~~lke~ar~~~g 313 (556)
..|.... ++.+||.+.++.-... ..+=|..+. +.++||++|||++||++++++|++ .|
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~-~G 490 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAE-EG 490 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHH-CC
Confidence 5555554 4689999988864321 112233333 358999999999999999999998 78
Q ss_pred ceEEEEccCCcchhhhhhcCCcc
Q 008716 314 LTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 314 i~~llt~aD~~Ai~FYkKqGFtk 336 (556)
+..+.+.++..|..||+|+||..
T Consensus 491 ~~~i~v~s~~~A~~FY~klGf~~ 513 (522)
T TIGR01211 491 SEKILVISGIGVREYYRKLGYEL 513 (522)
T ss_pred CCEEEEeeCchHHHHHHHCCCEE
Confidence 88888888888999999999965
No 107
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.08 E-value=1e-05 Score=78.11 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhhCCCCcHHHHH--HHhhcCCCcEEEEEECC--EEEEEEEEeeecCCceEEEEE-EeecCCCcccChHHH
Q 008716 225 WLIGLKNIFARQLPNMPKEYIV--RLVMDRSHKSVMVIRGN--VVVGGITYRPYVSQKFGEIAF-CAITADEQVKGYGTR 299 (556)
Q Consensus 225 ~L~~lkniF~~qLp~MPkeYI~--Rlv~D~~~~~~vl~~~g--~VIGGI~~r~f~~~~f~EI~f-lAV~~~~QgKGyGs~ 299 (556)
+|...-.+.-.|-|+--..... ..--|.--.+++++.++ +|||-.-+-+++++.-+-.+. +.|+...||+|+|+.
T Consensus 24 Llk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~ 103 (225)
T KOG3397|consen 24 LLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKF 103 (225)
T ss_pred HHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHH
Confidence 4444445555666655433222 22234455667777654 799977766666554333332 789999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 300 LMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 300 LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
||+.++.|+|. .++..+....+.+ .+||+..||+.
T Consensus 104 lMk~~E~~~R~-~gf~~~yLsT~DQ-~~FYe~lGYe~ 138 (225)
T KOG3397|consen 104 LMKSTEKWMRE-KGFNEAYLSTDDQ-CRFYESLGYEK 138 (225)
T ss_pred HHHHHHHHHHH-hhhhheeeecccc-hhhhhhhcccc
Confidence 99999999998 6777765554444 89999999975
No 108
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.02 E-value=3.5e-05 Score=75.93 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCCcEEEEEECC--EEEEEEEEee------------------------------------ecCCceEEEEE
Q 008716 243 EYIVRLVMDRSHKSVMVIRGN--VVVGGITYRP------------------------------------YVSQKFGEIAF 284 (556)
Q Consensus 243 eYI~Rlv~D~~~~~~vl~~~g--~VIGGI~~r~------------------------------------f~~~~f~EI~f 284 (556)
+-+.+|.=+|+|+.|++...+ +|+|.+-.-. |....-+=|+-
T Consensus 16 nDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvR 95 (196)
T PF13718_consen 16 NDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVR 95 (196)
T ss_dssp HHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEE
T ss_pred HHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEE
Confidence 456666656799999999888 9999663211 11112277889
Q ss_pred EeecCCCcccChHHHHHHHHHHHHH-------------------------hcCCceEEEE-ccCCc-chhhhhhcCCccc
Q 008716 285 CAITADEQVKGYGTRLMNHLKQHAR-------------------------DVDGLTHFLT-YADNN-AVGYFIKQGFTKE 337 (556)
Q Consensus 285 lAV~~~~QgKGyGs~LM~~lke~ar-------------------------~~~gi~~llt-~aD~~-Ai~FYkKqGFtk~ 337 (556)
+||.|++|++|||++|++.++++++ . .++-.+=+ +.-+. -..|++|+||..
T Consensus 96 IAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~vDylGtSFG~t~~Ll~FW~k~gf~p- 173 (196)
T PF13718_consen 96 IAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRP-PGVDYLGTSFGATPELLKFWQKNGFVP- 173 (196)
T ss_dssp EEE-CCC-SSSHHHHHHHHHHHT------------------------------S-SEEEEEEE--HHHHHHHHCTT-EE-
T ss_pred EEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc-cCCCEEEeccCCCHHHHHHHHHCCcEE-
Confidence 9999999999999999999999993 3 45544433 22223 378999999975
Q ss_pred cccccceEeeeeccC
Q 008716 338 IYLEKDRWQGYIKDY 352 (556)
Q Consensus 338 i~l~~~~w~G~IKdY 352 (556)
++.|..+|-
T Consensus 174 ------v~l~~~~n~ 182 (196)
T PF13718_consen 174 ------VYLGQTRNE 182 (196)
T ss_dssp ------EEE-SS--T
T ss_pred ------EEEecCccc
Confidence 667766665
No 109
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.93 E-value=7.6e-06 Score=86.73 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCCCCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008716 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (556)
Q Consensus 454 ~~l~~IL~~L~~~~~a~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (556)
........++........|..++....+|.|--+|++|+|..|++.|...+. |.| -+|..|..+|+.|+++||.+++.
T Consensus 211 ~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~and-y~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSAND-YES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhh-hhh-hhhhcccchhhHHHHhcCCcchH
Confidence 3344455666667777889999999999999999999999999999999865 899 88999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008716 534 YYKCATRHVD 543 (556)
Q Consensus 534 ~~k~A~~Lek 543 (556)
||+.|+++..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999998765
No 110
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.74 E-value=0.0003 Score=72.34 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=61.7
Q ss_pred CcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcC
Q 008716 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (556)
Q Consensus 254 ~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqG 333 (556)
..+++++++|+||++|+...... +.+||- ++..++|||||+++.+...++.+|.+ .++.=.....+...+.+=+|.|
T Consensus 165 G~Gf~i~~~~~iVs~~~s~~~~~-~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~-~~l~P~WDc~N~~S~~lA~kLG 241 (265)
T PF12746_consen 165 GFGFCILHDGEIVSGCSSYFVYE-NGIEID-IETHPEYRGKGLATAVAAAFILECLE-NGLYPSWDCHNLASIALAEKLG 241 (265)
T ss_dssp --EEEEEETTEEEEEEEEEEEET-TEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHH-TT-EEE-EESSHHHHHHHHHCT
T ss_pred CcEEEEEECCEEEEEEEEEEEEC-CEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHH-CCCCcCeeCCCHHHHHHHHHcC
Confidence 48999999999999876554444 458886 78999999999999999999999998 7877666666666799999999
Q ss_pred Ccc
Q 008716 334 FTK 336 (556)
Q Consensus 334 Ftk 336 (556)
|+-
T Consensus 242 f~~ 244 (265)
T PF12746_consen 242 FHF 244 (265)
T ss_dssp --E
T ss_pred Ccc
Confidence 974
No 111
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.70 E-value=0.00022 Score=73.00 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceE-EEEccCCc-chhhhh
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH-FLTYADNN-AVGYFI 330 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~-llt~aD~~-Ai~FYk 330 (556)
...++.+..+|+||....-.... ...++|.-+++.|+||||||++.|+..|.+-.-. .|... ++.+++|. |...|+
T Consensus 176 ~~~~~f~~~d~~iVa~A~t~a~~-~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~-eGk~~~L~~~~~N~~A~~iY~ 253 (268)
T COG3393 176 RSRTYFLEGDGKIVAKAETAAEN-PAYAQINGVYTHPEYRGKGYATALVATLAAKLLA-EGKIPCLFVNSDNPVARRIYQ 253 (268)
T ss_pred ceeEEEEccCCcEEEeeeccccC-CcceEEEEEEcCHHHccccHHHHHHHHHHHHHHh-CCCeeEEEEecCCHHHHHHHH
Confidence 45666677778999966544432 3568999999999999999999999999888776 45444 55556666 799999
Q ss_pred hcCCcc
Q 008716 331 KQGFTK 336 (556)
Q Consensus 331 KqGFtk 336 (556)
|.||+.
T Consensus 254 riGF~~ 259 (268)
T COG3393 254 RIGFRE 259 (268)
T ss_pred HhCCee
Confidence 999975
No 112
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00025 Score=65.00 Aligned_cols=79 Identities=23% Similarity=0.287 Sum_probs=61.0
Q ss_pred CEEEEEEEEeeec---CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCCc-chhhhhhcCCcc
Q 008716 263 NVVVGGITYRPYV---SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGYFIKQGFTK 336 (556)
Q Consensus 263 g~VIGGI~~r~f~---~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~~-Ai~FYkKqGFtk 336 (556)
+++||.|.+..+. ..+..||-+ .+.+.++|+|||+..+..+.+++-...++..+.. ..+|. ++..++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig~-~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIGY-WLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEEE-EEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 4899999887765 355677765 5599999999999999999999987567766544 44454 699999999987
Q ss_pred cccccc
Q 008716 337 EIYLEK 342 (556)
Q Consensus 337 ~i~l~~ 342 (556)
+..+..
T Consensus 156 eg~~~~ 161 (187)
T COG1670 156 EGELRQ 161 (187)
T ss_pred hhhhhh
Confidence 554443
No 113
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=97.64 E-value=0.00013 Score=69.61 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCEEEEEEEEeeec--CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCce---EEEEccCCcchhhhhhcCCcc
Q 008716 262 GNVVVGGITYRPYV--SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLT---HFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 262 ~g~VIGGI~~r~f~--~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~---~llt~aD~~Ai~FYkKqGFtk 336 (556)
.|+|-|.|..+.-- .+..+.+.-++|.|.||+.|+|+.||+.+++.... .+.. .++...+.-||+||+|.||++
T Consensus 50 ~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~-~~a~fvDLfVr~sN~iAI~mYkkLGY~~ 128 (173)
T KOG3234|consen 50 TGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDV-DNAYFVDLFVRVSNQIAIDMYKKLGYSV 128 (173)
T ss_pred CCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHh-hhhheeeeeeeccchhHHHHHHhcCceE
Confidence 36788888775532 23346777799999999999999999999999876 3322 344566666999999999985
No 114
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=97.55 E-value=0.00015 Score=69.34 Aligned_cols=108 Identities=17% Similarity=0.261 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhCCCCcHHHHHHHhh----cCCCcEEEEE-ECCEEEEEEEEeeec----CCceEEEEEEeecCCCcccCh
Q 008716 226 LIGLKNIFARQLPNMPKEYIVRLVM----DRSHKSVMVI-RGNVVVGGITYRPYV----SQKFGEIAFCAITADEQVKGY 296 (556)
Q Consensus 226 L~~lkniF~~qLp~MPkeYI~Rlv~----D~~~~~~vl~-~~g~VIGGI~~r~f~----~~~f~EI~flAV~~~~QgKGy 296 (556)
|...++..- -++|++|..+--+ .--..+||+. .+|+|||.+-...+. ......|..+||.-.||+.|+
T Consensus 12 L~~mQ~~Nl---~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGl 88 (193)
T KOG3235|consen 12 LLEMQHCNL---LNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGL 88 (193)
T ss_pred HHHhhhccc---ccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhH
Confidence 444455444 4455766654322 2345678888 468999999888875 344578999999999999999
Q ss_pred HHHHHHHHHHHHHhc---CCceEEEEccCCcchhhhh-hcCCcc
Q 008716 297 GTRLMNHLKQHARDV---DGLTHFLTYADNNAVGYFI-KQGFTK 336 (556)
Q Consensus 297 Gs~LM~~lke~ar~~---~gi~~llt~aD~~Ai~FYk-KqGFtk 336 (556)
|++||+.......+. ..+...+.-++-.|+++|+ ..||..
T Consensus 89 a~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v 132 (193)
T KOG3235|consen 89 AQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVV 132 (193)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEE
Confidence 999999976655543 3444556677777999999 999964
No 115
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.51 E-value=0.00022 Score=67.18 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=60.8
Q ss_pred cEEEEEE-CCEEEEEEEEeeec-CCceEE--EEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhh
Q 008716 255 KSVMVIR-GNVVVGGITYRPYV-SQKFGE--IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFI 330 (556)
Q Consensus 255 ~~~vl~~-~g~VIGGI~~r~f~-~~~f~E--I~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYk 330 (556)
..+..+. +|++|+ |.|..+ ...+.+ |=-++|+++.||+|+|.+||..+.+.+.+.-.-.-+...|..+...||.
T Consensus 50 ~Hl~~~~~~g~LvA--yaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa 127 (155)
T COG2153 50 RHLLGWTPDGELVA--YARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA 127 (155)
T ss_pred ceEEEEcCCCeEEE--EEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH
Confidence 3344444 899999 666653 334455 5559999999999999999999999998722234466777788899999
Q ss_pred hcCCcc
Q 008716 331 KQGFTK 336 (556)
Q Consensus 331 KqGFtk 336 (556)
..||.+
T Consensus 128 ~~GFv~ 133 (155)
T COG2153 128 SFGFVR 133 (155)
T ss_pred HhCcEE
Confidence 999965
No 116
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.39 E-value=0.00017 Score=56.60 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=38.9
Q ss_pred EeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCC
Q 008716 285 CAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (556)
Q Consensus 285 lAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGF 334 (556)
++|.+.+||+|+|+.||++++++++. .++. .+..++.+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~-~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK-RGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH-cCce-----ehHHHHHHHHhcCC
Confidence 89999999999999999999999997 5554 44568999999998
No 117
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.37 E-value=0.0095 Score=52.66 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHcCCeEEEEeeCCChhhHHHHHHHHHHHHhhh-C---CCCcHHHHHHHhhcC----CCcEEEEEECCEEEEEEEE
Q 008716 200 LKREEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQ-L---PNMPKEYIVRLVMDR----SHKSVMVIRGNVVVGGITY 271 (556)
Q Consensus 200 ~~~ee~~g~i~f~~~~nd~~~~~~~~L~~lkniF~~q-L---p~MPkeYI~Rlv~D~----~~~~~vl~~~g~VIGGI~~ 271 (556)
-++-++.|.++|++.. +..+...++..+.+...++ - +..+.+|+.+|+-.. ....+++..+|++||+...
T Consensus 11 ~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~ 88 (142)
T PF13480_consen 11 IRRAEKLGGVRFEVAT--DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALG 88 (142)
T ss_pred HHHHHhcCCEEEEEeC--CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEE
Confidence 3455668999998864 3444555566666777776 2 345678888887543 3344555678999997765
Q ss_pred eeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 272 RPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 272 r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
-.. .+.+...+.++++++...|.|..|+.+++++|.+ .|+..+
T Consensus 89 ~~~--~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~-~g~~~~ 131 (142)
T PF13480_consen 89 FRH--GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIE-RGLRYF 131 (142)
T ss_pred EEE--CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHH-CCCCEE
Confidence 443 4567888899999999999999999999999998 787554
No 118
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.35 E-value=0.001 Score=76.75 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=78.0
Q ss_pred CCeEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECC-EEEEEEEEeeecC---------
Q 008716 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGN-VVVGGITYRPYVS--------- 276 (556)
Q Consensus 207 g~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g-~VIGGI~~r~f~~--------- 276 (556)
|.++|.-+.....-..-..|..+=-|+-.-=-+=..+=+.+|.=.|+|+.+++.-++ ++|+ ++--....
T Consensus 423 ~~~~~~~~~~~~~~~~ee~Lr~~~gllV~AHYRnsP~DL~~L~DaP~h~~~al~~~~~~~va-~~qva~EG~l~~~~i~~ 501 (758)
T COG1444 423 GSLEILEVDQRDLLFDEELLRQVYGLLVSAHYRNSPNDLRRLLDAPHHHIFALRAPEGKPVA-VWQVAEEGGLSDELIDI 501 (758)
T ss_pred cceeeeeccHHhhhhCHHHHHHHHhHHhhhhccCCHHHHHHHhcCCCCeeEEEEcCCCceEE-EEEeeccCCCcHHHHHH
Confidence 888888887664433333444333333333222223445666544577777777666 4444 32111100
Q ss_pred ----------------------Cce-----EEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE-EEccCCc-chh
Q 008716 277 ----------------------QKF-----GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF-LTYADNN-AVG 327 (556)
Q Consensus 277 ----------------------~~f-----~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l-lt~aD~~-Ai~ 327 (556)
..| .=|+-+||.|++|++|||++||+++.+++++ ++-.+ +.+.-+. -..
T Consensus 502 ~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~~--~~DwlgvsFG~t~~L~r 579 (758)
T COG1444 502 WLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLIEEARK--GLDWLGVSFGYTEELLR 579 (758)
T ss_pred HhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHhc--CCCEEeeccCCCHHHHH
Confidence 001 5688899999999999999999999999974 33222 3343344 488
Q ss_pred hhhhcCCcc
Q 008716 328 YFIKQGFTK 336 (556)
Q Consensus 328 FYkKqGFtk 336 (556)
|+.||||..
T Consensus 580 FW~rnGF~p 588 (758)
T COG1444 580 FWLRNGFVP 588 (758)
T ss_pred HHHHcCeEE
Confidence 999999964
No 119
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.35 E-value=0.0022 Score=59.30 Aligned_cols=102 Identities=15% Similarity=0.278 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHH
Q 008716 225 WLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHL 304 (556)
Q Consensus 225 ~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~l 304 (556)
.++.|..|+ |.-+.+++...+ +..+.-|++..++.++|++-...- ...+++..++|.+--|++|+|..|++.+
T Consensus 14 d~iDL~KIw----p~~~~~~l~~~l-~~~~~l~aArFNdRlLgAv~v~~~--~~~~~L~~l~VRevTRrRGVG~yLlee~ 86 (128)
T PF12568_consen 14 DRIDLAKIW----PQQDPEQLEQWL-DEGHRLFAARFNDRLLGAVKVTIS--GQQAELSDLCVREVTRRRGVGLYLLEEV 86 (128)
T ss_dssp HHHHHHHH-----TTS-----------SSEEEEEEEETTEEEEEEEEEEE--TTEEEEEEEEE-TT-SSSSHHHHHHHHH
T ss_pred HHHHHHHhC----CCCCHHHHHHHh-ccCCeEEEEEechheeeeEEEEEc--CcceEEeeEEEeeccccccHHHHHHHHH
Confidence 345567777 777777776554 888888999999999998876653 4568999999999999999999999888
Q ss_pred HHHHHhcCCceEEEEccCC-cc------hhhhhhcCCcc
Q 008716 305 KQHARDVDGLTHFLTYADN-NA------VGYFIKQGFTK 336 (556)
Q Consensus 305 ke~ar~~~gi~~llt~aD~-~A------i~FYkKqGFtk 336 (556)
...+ ..+.++....+. .+ -+|-+.|||+.
T Consensus 87 ~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~ 122 (128)
T PF12568_consen 87 LRQL---PDIKHWWLADEGVEPQDRAVMAAFMQACGFSA 122 (128)
T ss_dssp HHHS----S--EEEE--TT-S--THHHHHHHHHHHT-EE
T ss_pred HHHC---CCCcEEEEecCCCcccchHHHHHHHHHcCccc
Confidence 7776 356666554332 11 36999999964
No 120
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.31 E-value=0.001 Score=69.07 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=61.4
Q ss_pred cEEEEEE-CCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcC
Q 008716 255 KSVMVIR-GNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (556)
Q Consensus 255 ~~~vl~~-~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqG 333 (556)
.++++.. +++||+ |.-.+ .. -|..+||++.+||-|..-+|+.+|.+++-+ .|..|++.|....-..||+-||
T Consensus 37 ~~v~~~~~~~~iia--cGsia--Gn--vikcvAvs~s~qGeGl~lkl~TeLin~ay~-~g~~hLFiyTKp~~~~lFk~~G 109 (352)
T COG3053 37 YFVAIYRDNEEIIA--CGSIA--GN--VIKCVAVSESLQGEGLALKLVTELINLAYE-RGRTHLFIYTKPEYAALFKQCG 109 (352)
T ss_pred EEEEEEcCCCcEEE--ecccc--cc--eeEEEEechhcccccHHHHHHHHHHHHHHH-cCCceEEEEechhHHHHHHhCC
Confidence 3444444 488998 33222 22 577899999999999999999999999998 8999999999988899999999
Q ss_pred Ccc
Q 008716 334 FTK 336 (556)
Q Consensus 334 Ftk 336 (556)
|..
T Consensus 110 F~~ 112 (352)
T COG3053 110 FSE 112 (352)
T ss_pred ceE
Confidence 965
No 121
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=97.28 E-value=0.00053 Score=66.19 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHhhhCCC--CcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEE---EEEEeecCCCccc
Q 008716 220 DEHMVWLIGLKNIFARQLPN--MPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGE---IAFCAITADEQVK 294 (556)
Q Consensus 220 ~~~~~~L~~lkniF~~qLp~--MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~E---I~flAV~~~~QgK 294 (556)
..+..||..+. +|.|. .|..++... .-|+...+|++||.|.+|+..+..+.+ =.=..|.|..|||
T Consensus 43 ~~fed~L~~~~----~~~~~~~~~~g~V~~~------~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~K 112 (174)
T COG3981 43 EDFEDWLEDLT----RQEPGNNLPEGWVPAS------TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRK 112 (174)
T ss_pred ccHHHHHHHHh----ccCCCcCCCCCceece------eEEEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhcc
Confidence 55666776643 33332 245555432 234444569999999999865443333 1126899999999
Q ss_pred ChHHHHHHHHHHHHHhcCCceEEEEccC--Ccc-hhhhhhcCC
Q 008716 295 GYGTRLMNHLKQHARDVDGLTHFLTYAD--NNA-VGYFIKQGF 334 (556)
Q Consensus 295 GyGs~LM~~lke~ar~~~gi~~llt~aD--~~A-i~FYkKqGF 334 (556)
|||++++....+.||. .|+..+++++| |.| ..--+++|=
T Consensus 113 GYA~emLkl~L~~ar~-lgi~~Vlvtcd~dN~ASrkvI~~NGG 154 (174)
T COG3981 113 GYAKEMLKLALEKARE-LGIKKVLVTCDKDNIASRKVIEANGG 154 (174)
T ss_pred CHHHHHHHHHHHHHHH-cCCCeEEEEeCCCCchhhHHHHhcCC
Confidence 9999999999999998 99999877665 444 557777775
No 122
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0035 Score=59.59 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=71.8
Q ss_pred HHHcCCeEEEEeeCC--C-hhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCce
Q 008716 203 EEEAGNLKFVCLSND--G-IDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKF 279 (556)
Q Consensus 203 ee~~g~i~f~~~~nd--~-~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f 279 (556)
.|+...+.|.|+.|. . .+......+|=-|+|-.+.| |.... .+..++| .
T Consensus 58 ~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt~~~------------~~~n~-----s~~~~~g-----------E 109 (185)
T KOG4135|consen 58 REDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLTTSP------------DTENP-----SDDVITG-----------E 109 (185)
T ss_pred ccCCcceEEEEEechhcccCchhHhhhccceeeEEecCC------------CcCCc-----ccceeee-----------e
Confidence 467788999999554 2 23355667778888988888 22110 1112233 2
Q ss_pred EEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEcc---CCcchhhhhhcCCcc
Q 008716 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA---DNNAVGYFIKQGFTK 336 (556)
Q Consensus 280 ~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~a---D~~Ai~FYkKqGFtk 336 (556)
+|+ +--.|.-||||||+..+..+..|+....++..+.... +...+.||+|.+|+.
T Consensus 110 ~Ev--MIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q 167 (185)
T KOG4135|consen 110 VEV--MIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQ 167 (185)
T ss_pred EEE--EEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhhee
Confidence 455 5678999999999999999999998755555443322 455799999999975
No 123
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=96.64 E-value=0.0061 Score=54.19 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEc
Q 008716 252 RSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTY 320 (556)
Q Consensus 252 ~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~ 320 (556)
.....+++..+|+++|.+++..... +.+-|..--|++.+||||+|++|+.++.+.||+ .+.+.+=++
T Consensus 13 ~~~~~y~~~~~G~~~~e~~y~~~~~-~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~-~g~kiiP~C 79 (99)
T COG2388 13 GENGRYVLTDEGEVIGEATYYDRGE-NLIIIDHTYVPDELRGQGIAQKLVEKALEEARE-AGLKIIPLC 79 (99)
T ss_pred cCceEEEEecCCcEEEEEEEecCCC-CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHH-cCCeEcccc
Confidence 3445566677899999888765432 346666688999999999999999999999998 776555333
No 124
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=96.38 E-value=0.011 Score=62.87 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeec---CC---ceEEEEEEeecCCCcccCh
Q 008716 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYV---SQ---KFGEIAFCAITADEQVKGY 296 (556)
Q Consensus 223 ~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~---~~---~f~EI~flAV~~~~QgKGy 296 (556)
...|..+-+.|.+-+-.=-+.|..+++-. ...+|+..+.++.+.+...+|. .. .-+.|.++|+.|+|||+|+
T Consensus 10 kE~i~~~s~~~~k~~~~~~~~~f~kil~~--~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~ 87 (389)
T COG4552 10 KEFIGLESYAFWKPLVPTDGAVFVKILAE--PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGA 87 (389)
T ss_pred HHHHhHHHHHhcCccccchhhhhhhhccC--CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcH
Confidence 34555566677776654445666666433 3345666777888888765531 11 2267999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 297 GTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 297 Gs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
-++||.|.....++ +|+.-.+.+ -...+||+|.||.-
T Consensus 88 ~~~Ll~~sLre~~~-kG~p~s~L~--P~s~~iYrKfGye~ 124 (389)
T COG4552 88 LRALLAHSLREIAR-KGYPVSALH--PFSGGIYRKFGYEY 124 (389)
T ss_pred HHHHHHHHHHHHHH-cCCeeEEec--cCchhhHhhccccc
Confidence 99999999888876 787766666 34578999999953
No 125
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=95.34 E-value=0.3 Score=48.54 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=91.7
Q ss_pred EEEEeeCCChhhHHHHHHHH----HHHHhhhCCC-CcH-HHHHHHhhcCCCcEEEE-E-ECCEEEEEEEEeeec------
Q 008716 210 KFVCLSNDGIDEHMVWLIGL----KNIFARQLPN-MPK-EYIVRLVMDRSHKSVMV-I-RGNVVVGGITYRPYV------ 275 (556)
Q Consensus 210 ~f~~~~nd~~~~~~~~L~~l----kniF~~qLp~-MPk-eYI~Rlv~D~~~~~~vl-~-~~g~VIGGI~~r~f~------ 275 (556)
++++|+-......-.+|..+ +.+|..+|.- +|. +=+.+=-||..+-.+++ . .+|+|||++ |..+
T Consensus 2 ~~~~v~~~~~~~~~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~--RLlptt~p~m 79 (207)
T PRK13834 2 RILAISPDQYEREASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCA--RLLPAIGPTM 79 (207)
T ss_pred eEEEEeCchhhcCHHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEE--ecccCCCcch
Confidence 46666555443333333333 5788877632 111 11233336765555444 3 357999954 2211
Q ss_pred ----------------CCceEEEEEEeecCCCc-ccC------hHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhc
Q 008716 276 ----------------SQKFGEIAFCAITADEQ-VKG------YGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (556)
Q Consensus 276 ----------------~~~f~EI~flAV~~~~Q-gKG------yGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKq 332 (556)
....+|+-=+||++.++ .+| +...|+..+.+++.. .|+.++++..+..-...|++.
T Consensus 80 l~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~-~Gi~~~~~v~~~~~~r~l~r~ 158 (207)
T PRK13834 80 LAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMA-NGYTEIVTATDLRFERILARA 158 (207)
T ss_pred hhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHc
Confidence 23569999999998753 222 556799999999998 999999988777667799999
Q ss_pred CCccccccccceEeeeeccCCCceeEeeee
Q 008716 333 GFTKEIYLEKDRWQGYIKDYDGGILMECKI 362 (556)
Q Consensus 333 GFtk~i~l~~~~w~G~IKdY~gatLM~C~l 362 (556)
||.. ...|.-+.++|...+-|.+
T Consensus 159 G~~~-------~~lG~~~~~g~~~~~a~~i 181 (207)
T PRK13834 159 GWPM-------QRLGEPKAIGNTMAVAGIL 181 (207)
T ss_pred CCCe-------EECCCCEEECCeEEEEEEE
Confidence 9965 3355555677777777765
No 126
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.31 E-value=0.19 Score=51.00 Aligned_cols=134 Identities=15% Similarity=0.142 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHHHHHhhhCCCC-cH---HHHHHHhhcCCCcEEEEEE--CCEEEEEEEEee---------ec--------
Q 008716 219 IDEHMVWLIGLKNIFARQLPNM-PK---EYIVRLVMDRSHKSVMVIR--GNVVVGGITYRP---------YV-------- 275 (556)
Q Consensus 219 ~~~~~~~L~~lkniF~~qLp~M-Pk---eYI~Rlv~D~~~~~~vl~~--~g~VIGGI~~r~---------f~-------- 275 (556)
.......+.-=+.||...+.=- |. +-..+=-||.....+++.. +|+|||++-+.+ |+
T Consensus 16 ~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~ 95 (241)
T TIGR03694 16 PELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHS 95 (241)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccc
Confidence 3333333444467888776421 11 2234444677666666654 489999664433 11
Q ss_pred ------------CCceEEEEEEeecCCCccc--------C--------------------hHHHHHHHHHHHHHhcCCce
Q 008716 276 ------------SQKFGEIAFCAITADEQVK--------G--------------------YGTRLMNHLKQHARDVDGLT 315 (556)
Q Consensus 276 ------------~~~f~EI~flAV~~~~QgK--------G--------------------yGs~LM~~lke~ar~~~gi~ 315 (556)
....+|+--+||.++++++ | +...|+..+.++|.+ .|+.
T Consensus 96 ~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~-~Gi~ 174 (241)
T TIGR03694 96 LDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSA-NGIT 174 (241)
T ss_pred cchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHH-CCCc
Confidence 1247899999999998874 3 335689999999998 9999
Q ss_pred EEEEccCCcchhhhhhcCCccccccccceEeeeeccCCCceeEeee
Q 008716 316 HFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECK 361 (556)
Q Consensus 316 ~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~gatLM~C~ 361 (556)
++++..+..-...+++.|+.- ...|--.+|.|.. +=|.
T Consensus 175 ~~~~v~~~~l~r~l~r~G~~~-------~~lG~~~~~~G~r-~p~~ 212 (241)
T TIGR03694 175 HWYAIMEPRLARLLSRFGIQF-------RQVGPPVDYHGLR-APYY 212 (241)
T ss_pred EEEEEeCHHHHHHHHHhCCce-------EEcCCCeeECcEe-ccee
Confidence 999988877788999999964 2345555565543 4443
No 127
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=95.24 E-value=0.19 Score=49.11 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHhhhCCCCcHHH--HHHHhhcCCCcEE-EEEECCEEEEEEEEeeec--------------------CCceEEEEEEe
Q 008716 230 KNIFARQLPNMPKEY--IVRLVMDRSHKSV-MVIRGNVVVGGITYRPYV--------------------SQKFGEIAFCA 286 (556)
Q Consensus 230 kniF~~qLp~MPkeY--I~Rlv~D~~~~~~-vl~~~g~VIGGI~~r~f~--------------------~~~f~EI~flA 286 (556)
+.+|..+|.=-...+ ...=-||...-.+ +...+|+|+|++-+.+-. .....|+.-+|
T Consensus 18 ~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~ 97 (182)
T PF00765_consen 18 HRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFC 97 (182)
T ss_dssp HHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEE
T ss_pred HHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEE
Confidence 677877763221100 1112256644444 445779999966443210 13569999999
Q ss_pred ecCCCcc------cChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCccccccccceEeeeeccCCCceeEee
Q 008716 287 ITADEQV------KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMEC 360 (556)
Q Consensus 287 V~~~~Qg------KGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~gatLM~C 360 (556)
|++.... .-+...|+..+.++|.+ .|+.++++..+..-..+|++.||.. ...|.-..++|..++-|
T Consensus 98 v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~-~gi~~~v~V~~~~~~r~l~r~G~~~-------~~lG~~~~~~~~~~~a~ 169 (182)
T PF00765_consen 98 VDPDRRRSRAGSRSPVTMELLLGMVEFALS-NGIRHIVGVVDPAMERILRRAGWPV-------RRLGPPRSIGGERVVAL 169 (182)
T ss_dssp E-HCCCHHCHSCC-THHHHHHHHHHHHHHC-TT-SEEEEEEEHHHHHHHHHCT-EE-------EESSEEEEETTEEEEEE
T ss_pred EcccccccccccccHHHHHHHHHHHHHHHH-CCCCEEEEEEChHHHHHHHHcCCce-------EECCCCeeeCCeEEEEE
Confidence 9988532 23567899999999998 9999999988877899999999965 22344344556666655
Q ss_pred ee
Q 008716 361 KI 362 (556)
Q Consensus 361 ~l 362 (556)
.+
T Consensus 170 ~i 171 (182)
T PF00765_consen 170 LI 171 (182)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 128
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.20 E-value=0.035 Score=51.79 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 008716 491 PMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFVFHLL 554 (556)
Q Consensus 491 PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe~~lk~~ll 554 (556)
|.||..+++|++.|. |+++.+|..||-+|+.-+..=-+...+.-+.-..+..+|.+.|...++
T Consensus 59 p~dL~~V~kkl~~G~-Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 59 PLDLEAVGKKLEAGF-YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred cccHHHHHHHHhccc-eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 889999999999985 899999999999999988765554455556566678888888887764
No 129
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.18 E-value=0.014 Score=55.91 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=43.5
Q ss_pred EEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 280 ~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
+.|..+||.++||.||+|..|+..-.++.-+..-....+.-+...-+.||++.||..
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~ 158 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKA 158 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCcee
Confidence 788889999999999999999877444444312233455666677899999999964
No 130
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=94.96 E-value=0.023 Score=62.37 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=43.0
Q ss_pred CCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 289 ADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 289 ~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
..+|-+|||+.||..++..|++ .+...+++.+.-.+..||+|.||..
T Consensus 460 ~~~QH~G~G~~L~~~AE~ia~e-e~~~ki~viSgiG~ReYy~k~GY~~ 506 (515)
T COG1243 460 DEWQHRGYGRELLEEAERIARE-EGAKKILVISGIGVREYYRKLGYEL 506 (515)
T ss_pred chhhcccHHHHHHHHHHHHHHh-hccccEEEEecccHHHHHHHhCccc
Confidence 6789999999999999999998 6778888888889999999999975
No 131
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=94.17 E-value=1.2 Score=43.92 Aligned_cols=120 Identities=11% Similarity=0.123 Sum_probs=70.0
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhhhCCCCcH-H-HHHHHhhcC-CCcEEEEEEC-CEEEEEEEEeeec------CCceE
Q 008716 211 FVCLSNDGIDEHMVWLIGLKNIFARQLPNMPK-E-YIVRLVMDR-SHKSVMVIRG-NVVVGGITYRPYV------SQKFG 280 (556)
Q Consensus 211 f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPk-e-YI~Rlv~D~-~~~~~vl~~~-g~VIGGI~~r~f~------~~~f~ 280 (556)
+.+|.|.+.+..-.+ ......+=...=+ + .+-+-.|+. -+..++++++ .+||++..+-.|. +.-+.
T Consensus 4 vdvv~NP~~e~~d~f----mk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~ 79 (181)
T PF06852_consen 4 VDVVINPPQEYFDQF----MKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQ 79 (181)
T ss_pred eEEEeCCCHHHHHHH----HHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeE
Confidence 678889987643222 2222222222211 2 233445666 4556666665 5799987654433 23478
Q ss_pred EEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhh-cCCcc
Q 008716 281 EIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIK-QGFTK 336 (556)
Q Consensus 281 EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkK-qGFtk 336 (556)
-|=|..+.|+|||+|+++.+-..+.+..+. .+ ...+.+....+..||.| +||..
T Consensus 80 ~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~-~N~~~~~~~~~~~~w~k~~G~~~ 134 (181)
T PF06852_consen 80 FIGFFWIDPEYRGKGIMKLQDDICMDELDS-VD-DNSVAQGNVKMSNFWHKMFGFDD 134 (181)
T ss_pred EEeeeeeCCcccCcchHHHHHHHHHHHhcc-CC-CceeeecCHHHHHHHHHHhCCCC
Confidence 888899999999999996444444455543 23 23444555666777765 68764
No 132
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=93.85 E-value=0.25 Score=45.73 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred cCCCcEEEEEECCEEEEEEEEee--ec----CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-ccCC
Q 008716 251 DRSHKSVMVIRGNVVVGGITYRP--YV----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-YADN 323 (556)
Q Consensus 251 D~~~~~~vl~~~g~VIGGI~~r~--f~----~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt-~aD~ 323 (556)
++.-..+.+.-+|.+||.+...- +. +++..| +-+-..||++|+|++..+.+...++ ++..+.+ -.+.
T Consensus 34 ~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~e---fFIi~k~~~~GvGR~aaK~If~~~~---g~w~Va~i~EN~ 107 (143)
T COG5628 34 DPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAE---FFIVRKHRRRGVGRAAAKAIFGSAW---GVWQVATVRENT 107 (143)
T ss_pred CcccceeEEEECCceeeeeeeecccCCCCcccccchh---eEeeehhhccchhHHHHHHHHHHhh---ceEEEEEeccCC
Confidence 45566777778899999885432 11 222233 3466799999999998888777665 4455444 4467
Q ss_pred cchhhhhhcCCccccc
Q 008716 324 NAVGYFIKQGFTKEIY 339 (556)
Q Consensus 324 ~Ai~FYkKqGFtk~i~ 339 (556)
+|+.||+|.-.+-.+.
T Consensus 108 PA~~fwK~~~~t~~i~ 123 (143)
T COG5628 108 PARAFWKRVAETYPVV 123 (143)
T ss_pred hhHHHHHhhhcccccc
Confidence 7999999987765443
No 133
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=93.57 E-value=0.31 Score=43.39 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred CceEEEEEEeecCCCcccChHHHHHHHHHHHHH
Q 008716 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (556)
Q Consensus 277 ~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar 309 (556)
..+..+-.+||.+..|+.|+|..|++.+++-..
T Consensus 32 ~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~~ 64 (99)
T cd04264 32 NGVPYLDKFAVSSSAQGEGTSDALWRRLRRDFP 64 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 477899999999999999999999999876543
No 134
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=92.14 E-value=0.46 Score=42.28 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.6
Q ss_pred ceEEEEEEeecCCCcccChHHHHHHHHHHHHH
Q 008716 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (556)
Q Consensus 278 ~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar 309 (556)
++..+-.+||.+..||.|+|..|++.+++...
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~ 64 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP 64 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhhCC
Confidence 67899999999999999999999999886644
No 135
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.08 E-value=0.67 Score=51.68 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=95.4
Q ss_pred CeEEEEeeCCC-hhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEE-E----CCEEEEEEEEeeecCCceEE
Q 008716 208 NLKFVCLSNDG-IDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-R----GNVVVGGITYRPYVSQKFGE 281 (556)
Q Consensus 208 ~i~f~~~~nd~-~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~-~----~g~VIGGI~~r~f~~~~f~E 281 (556)
++++.+-.+|. +-.....|+.=-|=|--.--+.-++-+.++.-|++...|.+- + ++.+||.+.+..- .+.+.
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk--~~~w~ 488 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKK--ESEWF 488 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEec--CCeEE
Confidence 56677767774 446666777777767666566677888888888888887774 2 3579997766543 46688
Q ss_pred EEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEEccC-----CcchhhhhhcCCc
Q 008716 282 IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYAD-----NNAVGYFIKQGFT 335 (556)
Q Consensus 282 I~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD-----~~Ai~FYkKqGFt 335 (556)
|..+..+..-=|+++-++||+.+++.|+. .|+..+.+|-. -.-..||+.+||.
T Consensus 489 IDt~lmSCRVlgRkvE~~l~~~~~e~A~~-~gi~tir~~Y~pt~kN~pv~~FyE~mgf~ 546 (574)
T COG3882 489 IDTFLMSCRVLGRKVEQRLMNSLEEQALS-EGINTIRGYYIPTEKNAPVSDFYERMGFK 546 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcceeeeEecccccCCcHHHHHHHhccc
Confidence 99899998888999999999999999997 88888776432 3347799999996
No 136
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=92.01 E-value=0.61 Score=45.06 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=53.0
Q ss_pred cHHHHHHHhhcCCC---cEEEEE--ECCEEEEEEEEeeec------CCceEEEEEEeecCCCcccChHHHHHHHHHHHHH
Q 008716 241 PKEYIVRLVMDRSH---KSVMVI--RGNVVVGGITYRPYV------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (556)
Q Consensus 241 PkeYI~Rlv~D~~~---~~~vl~--~~g~VIGGI~~r~f~------~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar 309 (556)
.+++|...+--|+. ..+.+. ..+++||+|+..+.. ....+||.|+||..+.|.|++.--|++.+...+.
T Consensus 61 S~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn 140 (162)
T PF01233_consen 61 SKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN 140 (162)
T ss_dssp -HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh
Confidence 45666666554433 233332 368999999765531 2356999999999999999999999999999988
Q ss_pred hcCCceEEE
Q 008716 310 DVDGLTHFL 318 (556)
Q Consensus 310 ~~~gi~~ll 318 (556)
. .|+..-+
T Consensus 141 ~-~gI~qAv 148 (162)
T PF01233_consen 141 L-QGIWQAV 148 (162)
T ss_dssp T-TT--EEE
T ss_pred h-cCceeee
Confidence 6 7776543
No 137
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=91.84 E-value=3.2 Score=43.36 Aligned_cols=129 Identities=14% Similarity=0.147 Sum_probs=78.7
Q ss_pred HHHHHHcCCeEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHh--hcCCCcEEEEE-ECCEEEEEEEEeeecC
Q 008716 200 LKREEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLV--MDRSHKSVMVI-RGNVVVGGITYRPYVS 276 (556)
Q Consensus 200 ~~~ee~~g~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv--~D~~~~~~vl~-~~g~VIGGI~~r~f~~ 276 (556)
.++-++.| ++++. . ...+.+..++. ++.-....|-.|++|+.++. |-.+...+++. .+|++||++.+..+
T Consensus 144 IRka~k~G-v~v~~-~-~~l~~F~~l~~--~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~-- 216 (330)
T TIGR03019 144 VRKGIKAG-LTVTV-D-GDLDRFYDVYA--ENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYF-- 216 (330)
T ss_pred HHHHHHCC-eEEEE-C-CcHHHHHHHHH--HHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEe--
Confidence 44566777 55554 2 22333333332 12234556878999999875 22233334445 58899998765444
Q ss_pred CceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-ccCC--cchhhhhhcCCcc
Q 008716 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-YADN--NAVGYFIKQGFTK 336 (556)
Q Consensus 277 ~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt-~aD~--~Ai~FYkKqGFtk 336 (556)
.+.+...+.+..++++..+-+..|+-+++++|++ .|+..+-- -++. ....|-++.||+.
T Consensus 217 ~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~-~G~~~fDfG~s~~~~G~~~FK~~~G~~~ 278 (330)
T TIGR03019 217 RDEVLPYYAGGLREARDVAANDLMYWELMRRACE-RGLRVFDFGRSKRGTGPFKFKKNWGFEP 278 (330)
T ss_pred CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHH-CCCcEEEcCCCCCCCccHHHHhcCCCee
Confidence 3434444677788899889999999999999998 77765432 2221 2234555668863
No 138
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=91.66 E-value=0.16 Score=54.28 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=40.1
Q ss_pred CCCcccChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCcc
Q 008716 289 ADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (556)
Q Consensus 289 ~~~QgKGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk 336 (556)
..||.+|||+.||..++..||.-++-..+-+-+.-....||+|.||+.
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~L 544 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYEL 544 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeee
Confidence 469999999999999999999866666665665666788999999965
No 139
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=90.11 E-value=0.62 Score=40.86 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE--ccCCcchhhhhhcCCc
Q 008716 262 GNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNNAVGYFIKQGFT 335 (556)
Q Consensus 262 ~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD~~Ai~FYkKqGFt 335 (556)
+|..|-=+.. ..+.|+.--..-|+|||||+.++++.++..++.+ .|+....- ..+.......++.||.
T Consensus 7 eG~PVSW~lm-----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~-~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 7 EGNPVSWSLM-----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHK-LGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCEeEEEEe-----cccccccccccCHhHhcCCHHHHHHHHHHHHHHH-CCCCeEeehHhccHHHHHHHHHCCCe
Confidence 4566653333 2347888888999999999999999999999998 77765433 3344478999999995
No 140
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=86.76 E-value=2.2 Score=43.47 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=51.9
Q ss_pred cChHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCccccccccceEeeeeccC---CCceeEeeeeCCC
Q 008716 294 KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDY---DGGILMECKIDPK 365 (556)
Q Consensus 294 KGyGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY---~gatLM~C~l~p~ 365 (556)
.|-...|+..+.+.|++ .+...++.+....+..+|.++||..+ |.|+.| ++|.+|...+.+.
T Consensus 20 ~~~~~~~~~~~~~~a~~-~~~~ki~~~~~~~~~~~~~~~g~~~e---------~~i~~~f~g~~~~~~~~~~~~~ 84 (266)
T TIGR03827 20 GNDVEALIPDLDALAKK-EGYTKIIAKVPGSDKPLFEERGYLEE---------AKIPGYFNGHDAYFMSKYLDED 84 (266)
T ss_pred CccHHHHHHHHHHHHHH-cCCcEEEEEccHHHHHHHHHCCCeEE---------EecccccCCCceEEEEEcCchH
Confidence 45578999999999998 99999999999999999999999874 555555 7888888877664
No 141
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=85.72 E-value=0.49 Score=55.40 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=51.7
Q ss_pred cCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 008716 488 IKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVF 549 (556)
Q Consensus 488 Ik~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe~~l 549 (556)
-.-|..|..|..||++ .||++.+.|..|+-.|..|+.+|.+.+..+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn-~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLEN-NYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHh-hhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3457899999999997 589999999999999999999999988877777777777766544
No 142
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=85.04 E-value=7.3 Score=41.01 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=60.4
Q ss_pred cccCccchhhHHHHHHHHcCCeEEEEeeCCChh---hHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEE-E--
Q 008716 188 QASGAYSAREELLKREEEAGNLKFVCLSNDGID---EHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-R-- 261 (556)
Q Consensus 188 ~~~~~~~~r~~~~~~ee~~g~i~f~~~~nd~~~---~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~-~-- 261 (556)
+++|..+=|+. ++|.|.|.-|.-.... |+|-+|. -+|-..-- +-||-...-|.++ +
T Consensus 75 ~PPG~eIYr~~------~~~~~sifEVDG~~~~~yCqnLcLla---KLFLdhKt---------lyyDV~~FlFYVl~e~d 136 (290)
T PLN03238 75 QPPGGGIYGAV------TEGPLSVFEVDGKKAKVYCQNLCLLA---KLFLDHKT---------LYYDVDPFLFYVMTEVD 136 (290)
T ss_pred CCCcCEeEecC------CCCcEEEEEEeCCcchhHHHHHHHHH---HHhhcCcc---------ccccccceEEEEEEEec
Confidence 45565555543 3666666655433333 4444443 33443322 3356655555554 2
Q ss_pred -CC-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 262 -GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 262 -~g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
.| .+||.-.=......+ --+.-+.|-|.||+||||+.|++.-=+..|.
T Consensus 137 ~~g~h~vGYFSKEK~s~~~-nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~ 186 (290)
T PLN03238 137 DHGSHIVGYFSKEKVSAED-YNLACILTLPPYQRKGYGKFLISFAYELSKR 186 (290)
T ss_pred CCCcEEEEEeceeccccCC-CcEEEEEecChhhhccHhHhHHHHHhHHhhc
Confidence 23 688865533322111 2344467999999999999999998888875
No 143
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=84.51 E-value=7.9 Score=38.43 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=38.4
Q ss_pred hhcCCCcEEEEE---EC-C-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 249 VMDRSHKSVMVI---RG-N-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 249 v~D~~~~~~vl~---~~-g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
-||-....|.++ ++ | .+||.-.-......+ .-+.-+.|-|.||+||||+.|+..-=+.+|.
T Consensus 46 yydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~-~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 46 YYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDN-NNLSCILTLPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp TT-STTEEEEEEEEEETTEEEEEEEEEEESS-TT--EEESEEEE-GGGTTSSHHHHHHHHHHHHHHH
T ss_pred EeecCceEEEEEEEecCccceeEEEEEEEecccCC-eeEeehhhcchhhhcchhhhhhhhHHHHhhc
Confidence 356655555444 22 2 588866543332222 3455578999999999999999998888875
No 144
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.73 E-value=12 Score=37.67 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=80.7
Q ss_pred HHHHhhhCC----CCcHHHHHHHhhcCCCcEEEEE--ECCEEEEEEEEeeec----------------------CCceEE
Q 008716 230 KNIFARQLP----NMPKEYIVRLVMDRSHKSVMVI--RGNVVVGGITYRPYV----------------------SQKFGE 281 (556)
Q Consensus 230 kniF~~qLp----~MPkeYI~Rlv~D~~~~~~vl~--~~g~VIGGI~~r~f~----------------------~~~f~E 281 (556)
+.||..+|. --+ + ...==||..+-.+++. .+|+|+|+. |..+ .-++.|
T Consensus 25 ~~vF~erL~W~v~~~~-g-~E~DqyD~~~t~Yll~~~~~g~I~G~~--RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwE 100 (209)
T COG3916 25 YQVFKERLGWDVVCID-G-FEIDQYDNLDTVYLLALTSDGRIVGCV--RLLPTTGPYMLTDVFPALLEGGPPPSSPGVWE 100 (209)
T ss_pred HHHHHHhcCCceeccC-C-ccccccCCCCceEEEEEcCCCcEEEEE--EeccCCCcchhhhhhHHHhcCCCCCCCCCeEE
Confidence 678887773 112 2 3333356655555444 578999954 3332 125688
Q ss_pred EEEEeecC--CCcccC----hHHHHHHHHHHHHHhcCCceEEEEccCCcchhhhhhcCCccccccccceEeeeeccCCCc
Q 008716 282 IAFCAITA--DEQVKG----YGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGG 355 (556)
Q Consensus 282 I~flAV~~--~~QgKG----yGs~LM~~lke~ar~~~gi~~llt~aD~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~ga 355 (556)
..-+||+. .-+..| .+..||.-+.+++++ .|+.+++|-.+..-...+++.||.. .-.|.-..+.+.
T Consensus 101 sSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~-~G~~~IvtVt~~~meril~r~Gw~~-------~riG~~~~ig~~ 172 (209)
T COG3916 101 SSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALA-RGITGIVTVTDTGMERILRRAGWPL-------TRIGPPLTIGNE 172 (209)
T ss_pred EeeeeeccccchhhcCCccHHHHHHHHHHHHHHHH-cCCceEEEEEchHHHHHHHHcCCCe-------EEcCCceeeCCe
Confidence 88889997 222222 466799999999998 9999999999998999999999954 224555555565
Q ss_pred eeEeeee
Q 008716 356 ILMECKI 362 (556)
Q Consensus 356 tLM~C~l 362 (556)
...-|.+
T Consensus 173 ~~VA~~l 179 (209)
T COG3916 173 RAVALLL 179 (209)
T ss_pred eEEEEEe
Confidence 6666554
No 145
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=83.34 E-value=1.5 Score=36.92 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.1
Q ss_pred EEEEEEeecCCCcccChHHHHHHHHHHHH
Q 008716 280 GEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (556)
Q Consensus 280 ~EI~flAV~~~~QgKGyGs~LM~~lke~a 308 (556)
.-|.-++|.+.+|+|||+++||+.+.+..
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 55777999999999999999999887664
No 146
>PTZ00064 histone acetyltransferase; Provisional
Probab=82.70 E-value=6.1 Score=44.49 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred HhhcCCCcEEEEE-E---CC-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 248 LVMDRSHKSVMVI-R---GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 248 lv~D~~~~~~vl~-~---~g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
|-||-...-|.++ + .| .+||+-.=......+ .-+.-+.|-|.||+||||+.||..-=+..|.
T Consensus 349 LYyDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~-nNLACILtLPpyQRKGYGklLIdfSYeLSrr 415 (552)
T PTZ00064 349 LQYDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLH-YNLACILTLPCYQRKGYGKLLVDLSYKLSLK 415 (552)
T ss_pred ccccccceEEEEEEEecCCCcEEEEEecccccCccc-CceEEEEecchhhhcchhhhhhhhhhhhhhh
Confidence 3456655665554 2 23 788865433322111 2345567999999999999999998888775
No 147
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=82.15 E-value=5 Score=37.10 Aligned_cols=46 Identities=28% Similarity=0.517 Sum_probs=30.1
Q ss_pred CEEEEEEE--Ee-ee---cCCceEEE------EEEeecCCCcccChHHHHHHHHHHHH
Q 008716 263 NVVVGGIT--YR-PY---VSQKFGEI------AFCAITADEQVKGYGTRLMNHLKQHA 308 (556)
Q Consensus 263 g~VIGGI~--~r-~f---~~~~f~EI------~flAV~~~~QgKGyGs~LM~~lke~a 308 (556)
|.|||.+- .+ .| ......|| .-+=|.++.|++|+|++|.+++...-
T Consensus 18 g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e 75 (120)
T PF05301_consen 18 GAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE 75 (120)
T ss_pred ceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc
Confidence 56899762 11 12 23333453 23458999999999999999876653
No 148
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=8.5 Score=39.41 Aligned_cols=124 Identities=17% Similarity=0.078 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHhhhCC-CCcHHHHHHHhhcCCCcEEEEEE-CCEEEEEEEEee-ecCCc-eEEEEEEeecCCCccc
Q 008716 219 IDEHMVWLIGLKNIFARQLP-NMPKEYIVRLVMDRSHKSVMVIR-GNVVVGGITYRP-YVSQK-FGEIAFCAITADEQVK 294 (556)
Q Consensus 219 ~~~~~~~L~~lkniF~~qLp-~MPkeYI~Rlv~D~~~~~~vl~~-~g~VIGGI~~r~-f~~~~-f~EI~flAV~~~~QgK 294 (556)
+.+....+..-+.....+-- ..|++.|.-+.| .....+.+.. +|++||.....+ +..+. +..-.+++|.+++++.
T Consensus 11 p~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~-~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~s 89 (266)
T COG3375 11 PAELDEAEDVQASAWGSEDRDGAPADTIRALRY-HGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGS 89 (266)
T ss_pred HHHHHHHHHHHHHHhCccccccchHHHHHHHHh-cCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhcccccccc
Confidence 34444455555555544443 347888886654 3444444454 469999776555 32333 5677789999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCceEEEEccC-Ccchh---hhhhcCCccccccccceEeeeeccCC
Q 008716 295 GYGTRLMNHLKQHARDVDGLTHFLTYAD-NNAVG---YFIKQGFTKEIYLEKDRWQGYIKDYD 353 (556)
Q Consensus 295 GyGs~LM~~lke~ar~~~gi~~llt~aD-~~Ai~---FYkKqGFtk~i~l~~~~w~G~IKdY~ 353 (556)
|+|-.|-..=-+.++. .|+..+-.+.| .+|+. =+-|.|-.- .-|||||=
T Consensus 90 glg~aLK~~Qre~a~~-~G~tli~WTfDPl~alNA~fNi~KLGa~a---------rtYi~nfY 142 (266)
T COG3375 90 GLGVALKMKQRERALS-MGYTLIAWTFDPLNALNARFNISKLGAIA---------RTYIKNFY 142 (266)
T ss_pred chhhhhHHHHHHHHHh-cCeeeEEEecccchhhhhhcchhhhceeE---------EEeecccc
Confidence 9999998888888887 89888765555 34443 345666643 67888883
No 149
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=79.55 E-value=5.6 Score=37.63 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEE---------------EEeeecCCceEEEEEEeecC
Q 008716 225 WLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGI---------------TYRPYVSQKFGEIAFCAITA 289 (556)
Q Consensus 225 ~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI---------------~~r~f~~~~f~EI~flAV~~ 289 (556)
-+..|.|--.-.|.-+..+-+.+++- +.|++.++|..-|.+ .||.- -..|+.|.-+.|..
T Consensus 20 avLaLNNeha~elswLe~erL~~l~~----eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrEr-Ye~F~YvDRvVVA~ 94 (167)
T COG3818 20 AVLALNNEHALELSWLELERLYRLYK----EAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRER-YENFFYVDRVVVAS 94 (167)
T ss_pred hHHhccchhhhhccccCHHHHHHHHH----HHHHHhhccchhhheeeccccccCCCCceeehhhh-CCceEEEEEEEEEe
Confidence 34445555555555555666666653 335555555444433 12221 24789999999999
Q ss_pred CCcccChHHHHHHHHHHHHHhcCCceEEEE--ccC--Cc-chhhhhhcCCcc
Q 008716 290 DEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YAD--NN-AVGYFIKQGFTK 336 (556)
Q Consensus 290 ~~QgKGyGs~LM~~lke~ar~~~gi~~llt--~aD--~~-Ai~FYkKqGFtk 336 (556)
.-||+|.|+.|...+.++|+. .|...+.+ ..| +. +..|--..||..
T Consensus 95 ~aRGrG~aRalY~Dlf~~Ae~-agy~~~tCEVn~DppnpasdaFHaalGF~e 145 (167)
T COG3818 95 RARGRGVARALYADLFSYAEL-AGYPYLTCEVNLDPPNPASDAFHAALGFHE 145 (167)
T ss_pred cccccchHHHHHHHHHHHHHh-cCCceEEEEecCCCCChHHHHHhhhcCceE
Confidence 999999999999999999997 67666665 333 33 466889999964
No 150
>PLN03239 histone acetyltransferase; Provisional
Probab=79.25 E-value=12 Score=40.41 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=40.4
Q ss_pred HhhcCCCcEEEEE-E---CC-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 248 LVMDRSHKSVMVI-R---GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 248 lv~D~~~~~~vl~-~---~g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
|-||-....|.++ + .| .+||.-.=......+ .-+.-+.|-|.||+||||+.||..-=+..|.
T Consensus 178 lyyDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~-~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 178 LYFDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVG-YNLACILTFPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred eeccccceEEEEEEEecCCceEEEEEeeecccCCCC-CceEEEEecChhhhcchhhhhHhhhhHhhhh
Confidence 3356666665554 2 24 688855433222111 2344467999999999999999998888875
No 151
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=78.67 E-value=6.8 Score=43.60 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=40.4
Q ss_pred HhhcCCCcEEEEE-E---CC-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 248 LVMDRSHKSVMVI-R---GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 248 lv~D~~~~~~vl~-~---~g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
|-||-...-|.++ + .| .+||+-.=......+ .-+.-+-|-|.||+||||+.|+..-=+..|.
T Consensus 271 lyydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~-~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 271 LYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEED-YNLACILTLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred eeccccceEEEEEEEecCCCcEEEEEecccccCcCC-CceEEEEecchhhhcchhheehhheehhhhc
Confidence 3466655665554 2 24 788865533322221 2344467899999999999999988777775
No 152
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=72.35 E-value=9.5 Score=41.79 Aligned_cols=99 Identities=19% Similarity=0.129 Sum_probs=51.5
Q ss_pred HHHHcCCeEEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECC---EEEEEEEEeeecCCc
Q 008716 202 REEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGN---VVVGGITYRPYVSQK 278 (556)
Q Consensus 202 ~ee~~g~i~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g---~VIGGI~~r~f~~~~ 278 (556)
.-=|+|.|.|.-|.-....--=.-|--|--+|-..- -|-||-...-|.++-.. ..||.-.=.....++
T Consensus 190 EIYR~~~iSvfEVDG~~~k~YCQnLCLlaKLFLdhK---------TLYyDvdpFlFYVlte~d~~G~VGYFSKEK~s~~~ 260 (396)
T KOG2747|consen 190 EIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHK---------TLYYDVDPFLFYVLTECDSYGCVGYFSKEKESSEN 260 (396)
T ss_pred eeeecCCEEEEEecCcchhHHHHHHHHHHHHHhcCc---------eeEEeccceEEEEEEecCCcceeeeeccccccccc
Confidence 344678888776543322211112222223333321 14466666665555322 235533221111111
Q ss_pred eEEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 279 FGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 279 f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
.-+.-+-|-|-||++|||+.|+..==+.-|.
T Consensus 261 -yNlaCILtLPpyQRkGYGklLIdFSYeLSr~ 291 (396)
T KOG2747|consen 261 -YNLACILTLPPYQRKGYGKLLIDFSYELSRR 291 (396)
T ss_pred -cceeeeeecChhhhcccchhhhhhhhhhhcc
Confidence 2245567999999999999999886666553
No 153
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=66.21 E-value=44 Score=32.52 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=50.2
Q ss_pred cHHHHHHHhhcCCCcEEEEEECCEEEEEEEEe-eecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE
Q 008716 241 PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYR-PYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (556)
Q Consensus 241 PkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r-~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt 319 (556)
...|+.|| ..+-..+++..+-+.++.++.. +-....+..+..+||.+.-||.|++-.+-+.+++-..+ ..+-+
T Consensus 51 v~~yl~~l--~~~~~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p~----L~Wrs 124 (170)
T PF04768_consen 51 VDHYLDRL--NNRLFKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDFPK----LFWRS 124 (170)
T ss_dssp HTTHHHHH--HTS-SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-SS----EEEEE
T ss_pred HHHHHHHh--hccceEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhccc----eEEEe
Confidence 45899988 2333333332333455533332 23455689999999999999999999999988665432 44445
Q ss_pred ccCCcchhhh
Q 008716 320 YADNNAVGYF 329 (556)
Q Consensus 320 ~aD~~Ai~FY 329 (556)
-.++.-..||
T Consensus 125 r~~n~~~~Wy 134 (170)
T PF04768_consen 125 REDNPNNKWY 134 (170)
T ss_dssp ETT-TTHHHH
T ss_pred cCCCCcccEE
Confidence 5555555544
No 154
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=64.63 E-value=2.2 Score=38.06 Aligned_cols=11 Identities=18% Similarity=0.284 Sum_probs=2.9
Q ss_pred Ccccchhhhhh
Q 008716 109 DSSMRTFTAAR 119 (556)
Q Consensus 109 ~~~~~~~~~~~ 119 (556)
+-..-+|+.++
T Consensus 40 e~p~p~fgea~ 50 (101)
T PF09026_consen 40 EVPVPEFGEAM 50 (101)
T ss_dssp ------HHHHH
T ss_pred cccchhHHHHH
Confidence 34566666554
No 155
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=63.63 E-value=5.9 Score=46.32 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.3
Q ss_pred EEEEEEeecCCCcccChHHHHHHHHHHHHHh
Q 008716 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (556)
Q Consensus 280 ~EI~flAV~~~~QgKGyGs~LM~~lke~ar~ 310 (556)
+-|+-+||.|+||+.|||++-++-|.+|.-.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG 645 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFEG 645 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHhc
Confidence 6799999999999999999999999998753
No 156
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=63.12 E-value=4.1 Score=49.49 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCcccCCCCCC-----CCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q 008716 469 AWPFKEPVDARD-----VPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA--DVKRMFANARTYNSPD 531 (556)
Q Consensus 469 a~pF~~PVd~~e-----vPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~a--DvrLIF~Ncr~YN~pd 531 (556)
+..|..|++... +++|-++|+.+||+...-.++.... |.++.+|.. ++.|||.|+..||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~-~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL-KLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh-HHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 456888887542 5689999999999999999999987 679999999 9999999999999976
No 157
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=60.19 E-value=15 Score=39.81 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=44.5
Q ss_pred CcEEEEEECCEEEEEEEEeeec------CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCce
Q 008716 254 HKSVMVIRGNVVVGGITYRPYV------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLT 315 (556)
Q Consensus 254 ~~~~vl~~~g~VIGGI~~r~f~------~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~ 315 (556)
|..+=+...+++||+|+..+.. .-..+||.|+||..+.|+|++.=-|+..+-..+.- .||.
T Consensus 136 HiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl-~gIf 202 (421)
T KOG2779|consen 136 HIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNL-EGIF 202 (421)
T ss_pred EEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhh-hhhh
Confidence 3333344457999999866531 22469999999999999999999998877666553 4443
No 158
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=58.71 E-value=13 Score=40.26 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHcCCeEEEEeeCCChhhHHH--HHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEE-ECC----EEEEEEEEeeecC
Q 008716 204 EEAGNLKFVCLSNDGIDEHMV--WLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-RGN----VVVGGITYRPYVS 276 (556)
Q Consensus 204 e~~g~i~f~~~~nd~~~~~~~--~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~-~~g----~VIGGI~~r~f~~ 276 (556)
=++|.|.|.-| ||..|.+- -|--|--+|-..- -|-||-.+.-|.++ +.| ++||.-.=..+..
T Consensus 192 YrD~~iS~~Ei--DG~~q~~~CrnLCLlsKlFLd~K---------tLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~ 260 (395)
T COG5027 192 YRDKYISFFEI--DGRKQRLYCRNLCLLSKLFLDHK---------TLYYDVDPFLFYVLTERGDTGCHLVGYFSKEKESE 260 (395)
T ss_pred eecCceEEEEE--cCcchhhHHHHHHHHHHHHhcCc---------eeEEeccceEEEEEEEcCCcceeeeeeechhhccc
Confidence 45677777655 55544321 1222222332221 13466666665554 332 4888665444433
Q ss_pred CceEEEEEEeecCCCcccChHHHHHHH
Q 008716 277 QKFGEIAFCAITADEQVKGYGTRLMNH 303 (556)
Q Consensus 277 ~~f~EI~flAV~~~~QgKGyGs~LM~~ 303 (556)
++ .-+.-+-+-|-||++|||..||..
T Consensus 261 ~~-yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 261 QD-YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred cc-CceEEEEecChhHhcccceEeeee
Confidence 33 345556689999999999999876
No 159
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=57.04 E-value=3.8 Score=36.52 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCc
Q 008716 84 GADSDADDSEDA 95 (556)
Q Consensus 84 ~~~~~~~~~~~~ 95 (556)
+.||++|++||.
T Consensus 9 ~~dse~dsdEde 20 (101)
T PF09026_consen 9 EEDSESDSDEDE 20 (101)
T ss_dssp ------------
T ss_pred Ccccccccccch
Confidence 445555544333
No 160
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=55.34 E-value=54 Score=29.28 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=27.8
Q ss_pred CceEEEEEEeecCCCcccChHHHHHHHHHHHH
Q 008716 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (556)
Q Consensus 277 ~~f~EI~flAV~~~~QgKGyGs~LM~~lke~a 308 (556)
..+..+..+||...-++.|++..+-+.+++-.
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~ 62 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF 62 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhhC
Confidence 46789999999999999999999998877553
No 161
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=52.31 E-value=54 Score=28.86 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008716 504 EQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDTINIVFVFH 552 (556)
Q Consensus 504 ~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~Fe~~lk~~ 552 (556)
+..|.|...|...+..|-.....++..+..+..+|..+.+.|.+.|++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999988888888778889999999999999999854
No 162
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=50.61 E-value=26 Score=30.54 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHhhcCCCcEEEEEECCE-EEEEEEEee---------e-------------cCCceEEEEEEeecCCCcccChHHHHH
Q 008716 245 IVRLVMDRSHKSVMVIRGNV-VVGGITYRP---------Y-------------VSQKFGEIAFCAITADEQVKGYGTRLM 301 (556)
Q Consensus 245 I~Rlv~D~~~~~~vl~~~g~-VIGGI~~r~---------f-------------~~~~f~EI~flAV~~~~QgKGyGs~LM 301 (556)
+..=-||.....+++.+++. +||++-+.. + .....+||--+||.++||+...-..|.
T Consensus 21 ~e~D~fD~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 21 RERDEFDEHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccccCCCCCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 44445788888888887766 999552111 0 113568888899999999877766654
No 163
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=49.19 E-value=17 Score=41.15 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=16.3
Q ss_pred hhCCCCcHHHHHHHhhcCCCcE
Q 008716 235 RQLPNMPKEYIVRLVMDRSHKS 256 (556)
Q Consensus 235 ~qLp~MPkeYI~Rlv~D~~~~~ 256 (556)
.|.||--++.|...-||.++.-
T Consensus 220 eQaPKSr~eLv~~YGyDIRn~D 241 (694)
T KOG4264|consen 220 EQAPKSRKELVTKYGYDIRNKD 241 (694)
T ss_pred hcCchHHHHHHHHhCccccCCC
Confidence 4778878888888888876443
No 164
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=48.53 E-value=3.3e+02 Score=28.13 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=75.8
Q ss_pred HHHHcCCeEEEEeeCCChhhHHHHHHHHHHHHhhhC--CCCcHHHHHHHhhcCCCcEEEE--EECCEEEEEEEEeeecCC
Q 008716 202 REEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQL--PNMPKEYIVRLVMDRSHKSVMV--IRGNVVVGGITYRPYVSQ 277 (556)
Q Consensus 202 ~ee~~g~i~f~~~~nd~~~~~~~~L~~lkniF~~qL--p~MPkeYI~Rlv~D~~~~~~vl--~~~g~VIGGI~~r~f~~~ 277 (556)
.--++..|.+.+....-+++...+..-..+.=...- ..|..++..+.+.+..-.+..+ ..+|++||..+.-...+.
T Consensus 88 ~lkrn~dl~v~~~~~~~~~E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~ 167 (240)
T PRK01305 88 VLKRNADLVVRVLPPEFTEEHYALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDG 167 (240)
T ss_pred HHhhccCeEEEEcCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCc
Confidence 334566788888777777777777666644333222 1234555566776664444333 357999997777666544
Q ss_pred ceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 278 ~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
+=.+++--+|++-..++|+..+-.-+++||+ .|+.++
T Consensus 168 --lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~-~gl~y~ 204 (240)
T PRK01305 168 --LSAVYTFYDPDEEHRSLGTFAILWQIELAKR-LGLPYV 204 (240)
T ss_pred --eeeEEEeeCCCccccCCHHHHHHHHHHHHHH-cCCCeE
Confidence 3444566899999999999988888999997 676554
No 165
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=47.21 E-value=1.8e+02 Score=27.06 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCCcE--EEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 242 KEYIVRLVMDRSHKS--VMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 242 keYI~Rlv~D~~~~~--~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
.+...+.+.+.-..+ +-+..+|++||..+....++. +=-+++--+|++....+|+..+-..+++||+ .++..+
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~g--lSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~-~~l~y~ 99 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDG--LSAVYTFYDPDYSKRSLGTYSILREIELARE-LGLPYY 99 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccch--hhheeeeeCCCccccCcHHHHHHHHHHHHHH-cCCCEE
Confidence 344455655543333 333468999998777766544 4455566799999999999999999999998 777665
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.85 E-value=15 Score=43.85 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=51.6
Q ss_pred ccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCC--------------C----------CHHH------HHHHHHHHHH
Q 008716 473 KEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYY--------------V----------TFEM------FVADVKRMFA 522 (556)
Q Consensus 473 ~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY--------------~----------s~~e------F~aDvrLIF~ 522 (556)
.-+++....|-|..+..-|.+|+|++.+|.+.. | . ++.+ ...-+.+|-.
T Consensus 87 v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~-k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 87 VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRA-KDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred ccCcCCCCCcceeeeecccchhcchhHHHHhhh-hhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 346677788889999999999999999999754 4 2 2333 5566788999
Q ss_pred HHhhhCCCCCHHHHHHHHHH
Q 008716 523 NARTYNSPDTIYYKCATRHV 542 (556)
Q Consensus 523 Ncr~YN~pdS~~~k~A~~Le 542 (556)
||+.+|.|+| +++.++.+.
T Consensus 166 at~~~akPgt-mvqkmk~ik 184 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIK 184 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHH
Confidence 9999999999 555444433
No 167
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=44.72 E-value=16 Score=32.55 Aligned_cols=22 Identities=41% Similarity=0.654 Sum_probs=13.4
Q ss_pred CCcccCCcccccccCCCcccch
Q 008716 93 EDAVVDDDEDEFENDNDSSMRT 114 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ 114 (556)
++++.+|||||.|+++...-||
T Consensus 63 ~E~ldg~deddaede~n~~n~t 84 (96)
T PF15387_consen 63 DEALDGDDEDDAEDENNIDNRT 84 (96)
T ss_pred hhhccCccccccccccCccccc
Confidence 3445566666666666666666
No 168
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=44.35 E-value=3.9 Score=47.10 Aligned_cols=74 Identities=7% Similarity=0.028 Sum_probs=65.0
Q ss_pred CCcccCCCCCCCCchhhhcCCCCChHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 008716 470 WPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRHVDT 544 (556)
Q Consensus 470 ~pF~~PVd~~evPDYy~IIk~PMDLsTIkkKL~s~~YY~s~~eF~aDvrLIF~Ncr~YN~pdS~~~k~A~~Lek~ 544 (556)
..|..-++.+.+|+||.+++-||-+....+++..++ |.....|..|+.++|.|+-.||.+..-++.++..|.+.
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~E-vfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQE-VFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhccc-ceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 446667778899999999999999999999999998 56777799999999999999999999888888877554
No 169
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=39.72 E-value=1.2e+02 Score=27.65 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.7
Q ss_pred CceEEEEEEeecCCCcc-cChHHHHHHHHHH
Q 008716 277 QKFGEIAFCAITADEQV-KGYGTRLMNHLKQ 306 (556)
Q Consensus 277 ~~f~EI~flAV~~~~Qg-KGyGs~LM~~lke 306 (556)
..+..+..+||.+.-|| .|++..+-+.+++
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 56789999999999997 8999999988776
No 170
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=36.36 E-value=4.9e+02 Score=26.70 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=59.2
Q ss_pred HHHHHHHcCCeEEEEeeCCC-hhhHHHHHHHHHHHHhhhCCCCcH-HHHHH---HhhcCCCcEEEEEE-CCEEEEEEEEe
Q 008716 199 LLKREEEAGNLKFVCLSNDG-IDEHMVWLIGLKNIFARQLPNMPK-EYIVR---LVMDRSHKSVMVIR-GNVVVGGITYR 272 (556)
Q Consensus 199 ~~~~ee~~g~i~f~~~~nd~-~~~~~~~L~~lkniF~~qLp~MPk-eYI~R---lv~D~~~~~~vl~~-~g~VIGGI~~r 272 (556)
...+=++.|.- ++++.-.. +++...-|..+-.-..+.- +-+. ..+.. ..+......+++.. +|+|+|.+.+.
T Consensus 122 ~in~~~k~G~~-~~~~~~~~~~~~~~~el~~i~~~W~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~ 199 (299)
T PF09924_consen 122 HINRFEKEGYT-FEVVPIPELDPELRDELLEISDEWLKEK-ERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGS 199 (299)
T ss_dssp HHHHHHHH--T--EEEE-----GGGHHHHHHHHHHHHHHC-THHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEE
T ss_pred HHHHHhcCceE-EEEEECCCCCHHHHHHHHHHHHHHHhcC-chhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEE
Confidence 34555666742 55444321 2333333333333333332 2222 22222 22234677778877 89999999999
Q ss_pred eecCCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEE
Q 008716 273 PYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFL 318 (556)
Q Consensus 273 ~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~ll 318 (556)
+.....-+-|.++==.++ =-+|+=..|+..+.+.+++ .++..+-
T Consensus 200 ~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~-~g~~~ln 243 (299)
T PF09924_consen 200 PLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKA-EGVEYLN 243 (299)
T ss_dssp EEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS---TT--EEE
T ss_pred EccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhh-CCceEEE
Confidence 887323244444333333 2499999999999999996 6766653
No 171
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=33.93 E-value=41 Score=36.81 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=53.4
Q ss_pred EEEEeeCC-Chh---hHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEE----CC----EEEEEEEEeeec--
Q 008716 210 KFVCLSND-GID---EHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIR----GN----VVVGGITYRPYV-- 275 (556)
Q Consensus 210 ~f~~~~nd-~~~---~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~----~g----~VIGGI~~r~f~-- 275 (556)
+|+|..-+ +++ ..+.-|..|--+|..-. +||- +.|+.=+.+.+.+ +| .++|..++--|+
T Consensus 140 ~~~vyk~~~~~~~f~~~~~Rlqt~~llFie~~-----~~id--~tde~w~~~lv~EK~~~d~~~ly~~~gy~tiyk~y~y 212 (403)
T KOG2696|consen 140 EFQVYKMEIGSPNFRLFHERLQTFSLLFIEAA-----SYID--NTDECWLIYLVYEKKEEDGDTLYAYVGYYTIYKFYEY 212 (403)
T ss_pred eEEEEEeecCChhHHHHHHhHHHHHHHHHhhc-----chhc--cCCCceEEEEeeeecccCCceeEeeeeeEEEeehhhh
Confidence 45555544 333 33444555555565553 3443 2244444444332 22 355555443332
Q ss_pred -CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEE
Q 008716 276 -SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (556)
Q Consensus 276 -~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~l 317 (556)
..-=.=|.-+-|-|.||++|+|++||+.+.........+..+
T Consensus 213 id~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~Di 255 (403)
T KOG2696|consen 213 IDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDI 255 (403)
T ss_pred hhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEE
Confidence 111133555779999999999999999998444432444443
No 172
>PRK04531 acetylglutamate kinase; Provisional
Probab=33.25 E-value=2.1e+02 Score=31.58 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=43.2
Q ss_pred HHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECC-EEEEEEEEeeecCCceEEEEEEeecCCCcccChHHHHHHHHHHHH
Q 008716 230 KNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (556)
Q Consensus 230 kniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g-~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~a 308 (556)
..-|.++|= ++|+.| ....-++..+. +.++ |+. +...+..+..|||.+.-|+.|++.-+-+.+++..
T Consensus 272 ~~sf~r~~~---~~y~~~-----~~~~~~y~~~~y~~~A-iv~---~~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~ 339 (398)
T PRK04531 272 ESSFGRTLK---PDYFDT-----TQLLRAYVSENYRAAA-ILT---ETGGGPYLDKFAVLDDARGEGLGRAVWNVMREET 339 (398)
T ss_pred hhhcccchH---HHHhcc-----CCceEEEEeCCCcEEE-EEe---cCCCceEeEEEEEccchhhcChHHHHHHHHHhhC
Confidence 334555443 578774 22333333333 3444 222 2246788999999999999999999999887665
Q ss_pred H
Q 008716 309 R 309 (556)
Q Consensus 309 r 309 (556)
.
T Consensus 340 ~ 340 (398)
T PRK04531 340 P 340 (398)
T ss_pred C
Confidence 4
No 173
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=30.86 E-value=38 Score=38.58 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=24.5
Q ss_pred hhhhhhcCCccccccccceEeeeeccCCCceeEeeeeCCCCCcc
Q 008716 326 VGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYT 369 (556)
Q Consensus 326 i~FYkKqGFtk~i~l~~~~w~G~IKdY~gatLM~C~l~p~i~y~ 369 (556)
+-||...-|.. =|-=+|.+|....|.-||++|..
T Consensus 439 L~f~d~~t~d~----------v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 439 LFFFDRMTLDT----------VYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred EEEEeccceee----------EEEecCCCceEEEEeecchhhhe
Confidence 34777777753 12236789999999999999843
No 174
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.82 E-value=25 Score=42.39 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=5.9
Q ss_pred CCCCCCCcCCcc
Q 008716 85 ADSDADDSEDAV 96 (556)
Q Consensus 85 ~~~~~~~~~~~~ 96 (556)
.+.|+|++||..
T Consensus 1403 ~~dd~DeeeD~e 1414 (1516)
T KOG1832|consen 1403 TDDDSDEEEDDE 1414 (1516)
T ss_pred CccccCccccch
Confidence 345555554443
No 175
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.44 E-value=1.2e+02 Score=33.06 Aligned_cols=89 Identities=20% Similarity=0.248 Sum_probs=45.7
Q ss_pred cEEEEEEC-CEEEEEEE-Eeeec--CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhcCCceEEEE-----cc----
Q 008716 255 KSVMVIRG-NVVVGGIT-YRPYV--SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-----YA---- 321 (556)
Q Consensus 255 ~~~vl~~~-g~VIGGI~-~r~f~--~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~~gi~~llt-----~a---- 321 (556)
+.+.+.++ ++|+|++. ++.-. ...+++|.. ...-++...-+=..++..|++++|+ .++..+-. +.
T Consensus 36 ~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yipr-GPv~d~~d~ell~~f~~~Lk~~akk-~~a~~lridP~~~~~~~~~ 113 (406)
T PF02388_consen 36 ERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPR-GPVMDYSDEELLEFFLEELKKYAKK-KRALFLRIDPNVIYQERDE 113 (406)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT---EC-TT-HHHHHHHHHHHHHHHCT-TTEEEEEE--S-EEECE-T
T ss_pred EEEEEEeCCCeEEEEEEEEEeccCCceeEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHH-CCEEEEEEeCchhhhhccc
Confidence 44444555 56666542 22222 222344432 1111777788888899999999997 44332211 11
Q ss_pred ---------CCcchhhhhhcCCccccccccceEeeeeccCCC
Q 008716 322 ---------DNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDG 354 (556)
Q Consensus 322 ---------D~~Ai~FYkKqGFtk~i~l~~~~w~G~IKdY~g 354 (556)
+...+..|++.||.- .|+-++|++
T Consensus 114 ~g~~~~~~~~~~~~~~l~~~G~~~---------~g~~~~~~~ 146 (406)
T PF02388_consen 114 DGEPIEGEENDELIENLKALGFRH---------QGFTKGYDD 146 (406)
T ss_dssp TS-EEEE-S-THHHHHHHHTT-CC---------TS-SSSTTS
T ss_pred ccccccCcchHHHHHHHHhcCcee---------cCcccCCCc
Confidence 123478999999953 566666655
No 176
>PRK14852 hypothetical protein; Provisional
Probab=27.27 E-value=2.7e+02 Score=34.47 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCcEEEEEECCEEEEEEEEeeec---------------------CCceEEEEEEeecCCCcccChHHHHHHHHHHHHHhc
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYV---------------------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDV 311 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~---------------------~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar~~ 311 (556)
+..+|+.-..+++||..+..+-. ...++|+.-+||++..+.+=+=-.|++.+..|+..
T Consensus 74 ~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~- 152 (989)
T PRK14852 74 ATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMM- 152 (989)
T ss_pred cceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHH-
Confidence 44446665557788877543321 23569999999987776655555777888888875
Q ss_pred CCceEEEEccCCcchhhhh-hcCCccccccccceEeeeeccCC
Q 008716 312 DGLTHFLTYADNNAVGYFI-KQGFTKEIYLEKDRWQGYIKDYD 353 (556)
Q Consensus 312 ~gi~~llt~aD~~Ai~FYk-KqGFtk~i~l~~~~w~G~IKdY~ 353 (556)
.++..++..-+-.=..||+ -+||+. .|..+.|+
T Consensus 153 ~~~dd~~i~VnPkH~~FY~r~l~f~~---------ig~~r~~p 186 (989)
T PRK14852 153 SEVDDILVTVNPKHVKFYTDIFLFKP---------FGEVRHYD 186 (989)
T ss_pred cCCCeEEEEECcchHHHHHHHhCCcc---------ccccccCC
Confidence 7888877765555688999 679975 46566664
No 177
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=26.19 E-value=2.6e+02 Score=31.12 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=45.5
Q ss_pred HHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEE--EEEeeecCCceEEEEEEeecCCCcc-cChHHHHHHHHHH
Q 008716 230 KNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGG--ITYRPYVSQKFGEIAFCAITADEQV-KGYGTRLMNHLKQ 306 (556)
Q Consensus 230 kniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGG--I~~r~f~~~~f~EI~flAV~~~~Qg-KGyGs~LM~~lke 306 (556)
+.-|.+.|- |..|+.|+- +...-+++. |.-.|. +++.--.+..+-++..+||.+.-|| -|+|..+.+-+-+
T Consensus 355 ~~SFkRTLd--~h~y~~r~~---~~La~~iVs-gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e 428 (495)
T COG5630 355 QSSFKRTLD--PHYYETRIN---TPLARAIVS-GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMRE 428 (495)
T ss_pred HHHHhhccC--HHHHHHhcc---CcceeEEee-ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHH
Confidence 455777765 788988872 122222222 222232 2333223446788999999999999 9999998777654
Q ss_pred HH
Q 008716 307 HA 308 (556)
Q Consensus 307 ~a 308 (556)
.-
T Consensus 429 ~f 430 (495)
T COG5630 429 EF 430 (495)
T ss_pred hC
Confidence 43
No 178
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=25.81 E-value=1.4e+02 Score=33.02 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred cCCCCCCCCCCCCCCCccccccchhHHHhHHHH
Q 008716 11 TAPNRSRSSQTPSPSHSASASATSSIHKRKLAA 43 (556)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (556)
+.-..++||-+|+|+.+.+.+.-+++.-.+.++
T Consensus 197 ~~e~~~sss~~~~p~~~~~~ss~~~~~~~~~~e 229 (548)
T COG5665 197 GCEIQPSSSNNEAPKEGNNQTSLSSIRSSKKQE 229 (548)
T ss_pred ccccCCccCCCCCCcccCccccHHHHHhHHHhh
Confidence 444457788889999988888888888877765
No 179
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=25.77 E-value=2.3e+02 Score=30.34 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCcEEEEEECCEEEEEEEEeeecCC-----ceEEEEEEeecCCCcccChHHHHHHHHHHHHH--------hcCCceEEE-
Q 008716 253 SHKSVMVIRGNVVVGGITYRPYVSQ-----KFGEIAFCAITADEQVKGYGTRLMNHLKQHAR--------DVDGLTHFL- 318 (556)
Q Consensus 253 ~~~~~vl~~~g~VIGGI~~r~f~~~-----~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar--------~~~gi~~ll- 318 (556)
...+-+++..+.+|+.|+..+-..+ -.+-|.-+.|..-|+.-|+=.-|+..+.-.+| .+.+....+
T Consensus 168 ~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 168 GKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 3466777788889999988875433 24677779999999999999999988843333 222222222
Q ss_pred E---ccCCcchhhhhhcCCcc
Q 008716 319 T---YADNNAVGYFIKQGFTK 336 (556)
Q Consensus 319 t---~aD~~Ai~FYkKqGFtk 336 (556)
+ ..|..-....+++||..
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~ 268 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKK 268 (304)
T ss_pred EEeeeccHHHHHHHHHCCCee
Confidence 2 33566788999999964
No 180
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=37 Score=37.50 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=7.6
Q ss_pred HHHhhhCCCC
Q 008716 231 NIFARQLPNM 240 (556)
Q Consensus 231 niF~~qLp~M 240 (556)
.-|..|||..
T Consensus 352 hsfAq~lp~i 361 (514)
T KOG3130|consen 352 HSFAQELPTI 361 (514)
T ss_pred ccccccCCcc
Confidence 5578888876
No 181
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=1.1e+02 Score=38.58 Aligned_cols=7 Identities=29% Similarity=0.225 Sum_probs=3.6
Q ss_pred CCeEEEE
Q 008716 207 GNLKFVC 213 (556)
Q Consensus 207 g~i~f~~ 213 (556)
|++.|.-
T Consensus 1918 ~ierf~P 1924 (3015)
T KOG0943|consen 1918 GIERFDP 1924 (3015)
T ss_pred Ceeeecc
Confidence 4555543
No 182
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=22.24 E-value=3.9e+02 Score=28.00 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=58.5
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEE-CCEEEEEEEEeeec-------------
Q 008716 210 KFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIR-GNVVVGGITYRPYV------------- 275 (556)
Q Consensus 210 ~f~~~~nd~~~~~~~~L~~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~-~g~VIGGI~~r~f~------------- 275 (556)
.|..|.-+.+.-.+..+.++..+.-..|.--+. ...++ +.-++|..+. +..|||.+.+.+..
T Consensus 90 rIv~V~~~~s~~~~kk~~Ev~~~VnnELg~~~~---~~~~~-~~~k~~lFIS~rk~~VGcLvaE~Is~a~~~i~~~~~~~ 165 (257)
T KOG3014|consen 90 RIVYVNPEDSPAALKKVEEVMKMVNNELGYQQI---ENQCW-PKIKTFLFISVRKIVVGCLVAEPISQAFRVIESPGVTD 165 (257)
T ss_pred eEEEEeCCCChHHHHHHHHHHHHHHhhcCCccc---ccccc-cceeEEEEEEecceeeeEEEehhhhhhhhhccCcCccc
Confidence 344455555666777777777777777763222 22222 2333444443 34589955533221
Q ss_pred --------------CCceEEEEEEeecCCCcccChHHHHHHHHHHHHH
Q 008716 276 --------------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (556)
Q Consensus 276 --------------~~~f~EI~flAV~~~~QgKGyGs~LM~~lke~ar 309 (556)
.-.+.-|.-++|.+..|++|+.+.|+..+-..-.
T Consensus 166 ~~~s~~~~~~s~~~~~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 166 SYDSQKAWQNSPLPEPAICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred chhhHHHhccCCCCCCcEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 1234678889999999999999999988755443
No 183
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=1.5e+02 Score=30.68 Aligned_cols=46 Identities=39% Similarity=0.616 Sum_probs=35.8
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhhcCCCcEEEEEECCEEEEEEEEeeecCCceEEEEEEeecCCCcccChHHH
Q 008716 228 GLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTR 299 (556)
Q Consensus 228 ~lkniF~~qLp~MPkeYI~Rlv~D~~~~~~vl~~~g~VIGGI~~r~f~~~~f~EI~flAV~~~~QgKGyGs~ 299 (556)
-++|+|.+..| -|-+-+++++++|+...||.+.-.+.. + -||+|++
T Consensus 160 ll~~if~~~tp--------------lhDGAvII~~~kIvaAg~yLpls~~~~-------i-----~k~lGtR 205 (247)
T COG1624 160 LLINIFKPETP--------------LHDGAVIIRDNKIVAAGRYLPLSEKSL-------I-----SKGLGTR 205 (247)
T ss_pred HhHHhhccCCc--------------cccceEEEeCCEEEEEEEEeccCCCCC-------c-----CccccHH
Confidence 46899997766 478888899999999889888755542 2 2899998
No 184
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=20.26 E-value=1.6e+02 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 008716 495 RTMSKRVESEQYYVTFEMFVADVKRMFAN 523 (556)
Q Consensus 495 sTIkkKL~s~~YY~s~~eF~aDvrLIF~N 523 (556)
..|+.++++|. |.+..+.++|..+++.-
T Consensus 12 ~~i~~~V~sG~-Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGR-YGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Confidence 46889999987 89999999999887754
Done!