BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008717
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 89
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 267
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 268 VTGGKWIVSGSEDN 281
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 219
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 280 DNLVYIWNLQTKEI 293
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 91
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 269
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 270 VTGGKWIVSGSEDN 283
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 221
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 282 DNLVYIWNLQTKEI 295
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 252 VTGGKWIVSGSEDN 265
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 203
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 264 DNLVYIWNLQTKEI 277
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 68
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 246
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 247 VTGGKWIVSGSEDN 260
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 198
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 259 DNLVYIWNLQTKEI 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 84
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 262
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 263 VTGGKWIVSGSEDN 276
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 214
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 275 DNLVYIWNLQTKEI 288
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 63
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 241
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 242 VTGGKWIVSGSEDN 255
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 193
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 254 DNLVYIWNLQTKEI 267
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 72
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 250
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 251 VTGGKWIVSGSEDN 264
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 202
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 263 DNLVYIWNLQTKEI 276
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 67
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 245
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 246 VTGGKWIVSGSEDN 259
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 197
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 258 DNLVYIWNLQTKEI 271
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 252 VTGGKWIVSGSEDN 265
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 203
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 264 DNLVYIWNLQTKEI 277
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 67
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 245
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 246 VTGGKWIVSGSEDN 259
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 197
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 258 DNLVYIWNLQTKEI 271
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 73
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 251
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 252 VTGGKWIVSGSEDN 265
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 203
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 264 DNLVYIWNLQTKEI 277
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 249 VTGGKWIVSGSEDN 262
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 200
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 261 DNLVYIWNLQTKEI 274
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 66
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 244
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 245 VTGGKWIVSGSEDN 258
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 196
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 257 DNLVYIWNLQTKEI 270
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 249 VTGGKWIVSGSEDN 262
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 200
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 261 DNLVYIWNLQTKEI 274
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 9/246 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+ + V+WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLGISDVAWSS 78
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ + L++ ++ ++ WDV+SG+CL + + C + I +G D+S+ +WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 388 L-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FERWIEEEEVI 444
+ G L++ +S + DG I+S + + D + + I+++
Sbjct: 139 VKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 445 TSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503
SF S + KY+L ++ ++ LW S K + Y GHK ++ I + F +I
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 504 SGSEDS 509
SGSED+
Sbjct: 257 SGSEDN 262
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSFVK 202
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMTDK 381
+SPN +L + ++ WD + G+CL Y K I + + GG I +G D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 382 SICLWDLDGREL 393
+ +W+L +E+
Sbjct: 263 MVYIWNLQTKEI 274
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L+ HS+ V+ F+ + S S D+S IW+VK + LK L H PV
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GMCLK-TLPAHSDPVSA 157
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF-LDGGGIFAGMTDK 381
V ++ + +++ + R WD SG+CL +S F +G I A D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 382 SICLWDLD-GRELESWKGQKTLR---ISDMAITDDGKRIIS 418
+ LWD G+ L+++ G K + ++ ++T GK I+S
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVS 257
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 261 PSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
P+ L+ L H+ V ++FS +G++LA+SS D+ IW DG+ + +SGH+
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-YDGK--FEKTISGHKLG 70
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
+ V+WS + + L++ ++ ++ WDV+SG+CL + + C + I +G
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FER 436
D+S+ +WD+ G+ L++ +S + DG I+S + + D + +
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 437 WIEEEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495
I+++ SF S + KY+L ++ + LW S K + Y GHK ++ I + F
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFS 248
Query: 496 GFEQAFIASGSEDS 509
+I SGSED+
Sbjct: 249 VTGGKWIVSGSEDN 262
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSF 200
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMT 379
V +SPN +L + ++ WD + G+CL Y K I + + GG I +G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 380 DKSICLWDLDGREL 393
D + +W+L +E+
Sbjct: 261 DNLVYIWNLQTKEI 274
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 9/246 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H+ V ++FS +G++LASSS D+ IW DG+ + +SGH+ + V+WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGK--FEKTISGHKLGISDVAWSS 78
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ + L++ ++ ++ WDV+SG+CL + + C + I +G D+S+ +WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 388 L-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--FERWIEEEEVI 444
+ G L++ +S + DG I+S + + D + + I+++
Sbjct: 139 VKTGMCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 445 TSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503
SF S + KY+L ++ + LW S K + Y GHK ++ I + F +I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 504 SGSEDS 509
SGSED+
Sbjct: 257 SGSEDN 262
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
L+ L AHSD V + F+ DG + SSS D IW+ GQ LK + PV V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSFVK 202
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGG-IFAGMTDK 381
+SPN +L + ++ WD + G+CL Y K I + + GG I +G D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 382 SICLWDLDGREL 393
+ +W+L +E+
Sbjct: 263 MVYIWNLQTKEI 274
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L+ L+ HS+ V+ F+ + S S D+S IW+VK + LK L H PV
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GMCLK-TLPAHSDPVSA 157
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF-LDGGGIFAGMTDK 381
V ++ + +++ + R WD SG+CL +S F +G I A D
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 382 SICLWDLD-GRELESWKGQKTLR---ISDMAITDDGKRIIS 418
++ LWD G+ L+++ G K + ++ ++T GK I+S
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVS 257
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 7/208 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS DG+ +AS+S D++ +W +GQ L L+GH V+
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVWG 185
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + ++ +A DG+ I S + + L +R +
Sbjct: 245 VKLWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWS 469
+ + S D + + ++ + LW+
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 9/222 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS DG+ +AS+S D++ +W +GQ L L+GH V
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVRG 103
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 162
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + + +A + DG+ I S + + L +R +
Sbjct: 163 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 221
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483
+ + S D + + ++ + LW + +L+ GH
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGH 261
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 12/247 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS DG+ +AS+S D++ +W +GQ L+GH V+
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQ--HLQTLTGHSSSVWG 349
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + + +A + D + I S + + L +R +
Sbjct: 409 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS 467
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ + S D + + ++ + LW + +L+ GH + +R +
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQT 522
Query: 502 IASGSED 508
IAS S+D
Sbjct: 523 IASASDD 529
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 12/242 (4%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LEAHS V + FS DG+ +AS+S D++ +W +GQ L L+GH V+ V++SP
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVWGVAFSP 67
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ + + ++ ++ W+ N G+ L + + DG I + DK++ LW+
Sbjct: 68 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEEEVITS 446
+G+ L++ G + + +A + DG+ I S + + L +R + +
Sbjct: 127 RNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506
+ S D + + ++ + LW + +L+ GH + +R + IAS S
Sbjct: 186 VAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 240
Query: 507 ED 508
+D
Sbjct: 241 DD 242
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 114/247 (46%), Gaps = 12/247 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS V + F DG+ +AS+S D++ +W +GQ L L+GH V+
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVWG 308
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-FERWIEEE 441
+ LW+ +G+ L++ G + + +A + DG+ I S + + L +R +
Sbjct: 368 VKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501
+ + S D++ + ++ + LW + +L+ GH + +R +
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLW--NRNGQLLQTLTGHSSS---VRGVAFSPDGQT 481
Query: 502 IASGSED 508
IAS S+D
Sbjct: 482 IASASDD 488
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
Q LQ L HS VW + FS D + +AS+S D++ +W +GQ L L+GH V
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN--RNGQ--LLQTLTGHSSSVRG 472
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V++SP+ + + ++ ++ W+ N G+ L + + DG I + DK+
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
+ LW+ +G+ L++ G + + +A + DG+ I S + + L +
Sbjct: 532 VKLWNRNGQLLQTLTGHSS-SVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369
++RL H V V++SP+ + + ++ ++ W+ N G+ L + +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 67
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DG I + DK++ LW+ +G+ L++ G + + +A + DG+ I S + + L +
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 430 REAN-FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488
R + + + S D + + ++ + LW + +L+ GH + +
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVW 184
Query: 489 VIRSCFGGFEQAFIASGSED 508
+ F Q IAS S+D
Sbjct: 185 GV--AFSPDGQT-IASASDD 201
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LE HS V + S++G + S+S D S +W + ++GQ +++ GH K V +V++SP
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL-QNGQC--QYKFLGHTKDVLSVAFSP 119
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWF---LDGGGIFAGMTDKSI 383
++ Q+++ G++ A+R W+V GEC+H + +SC F LD I +G D +
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 384 CLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD---REANFERWIE 439
+WDL GR + KG T ++ + ++ DG S ++ L D EA E +
Sbjct: 179 KVWDLATGRLVTDLKGH-TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE--MA 235
Query: 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493
I S N+Y + + I ++ +E+ +V H+ ++ ++ C
Sbjct: 236 AGAPINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPEC 288
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L+ H++ V + S DG ASS KD A +W++ + G+ +L +G P+ + +SP
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK-GE-ALSEMAAG--APINQICFSP 247
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECL------HVYEKTGVG-LISCGWFLDGGGIFAGMTD 380
N + + E+ IR +D+ + + + H K V +S W DG +++G TD
Sbjct: 248 NRYWMCA-ATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTD 306
Query: 381 KSICLWDL 388
I +W +
Sbjct: 307 NVIRVWGV 314
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 287 LASSSKDQSAIIWEVKEDGQVS------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340
+ S+S+D++ + W D S RL GH V V+ S N + ++ + +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395
+R W++ +G+C + + ++S + D I +G D ++ +W++ G + +
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHT 145
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 49/278 (17%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKP---------- 319
H+ V ++FS+DG+YLA+ +++ ++ V + V+ L + ++ P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 320 ----VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF 375
+ +V +SP+ L T ++ IR WD+ + + + + + + S +F G +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-----DDGKRIISICREAAILLLDR 430
+G D+++ +WD L + + TL I D T DGK I + + A+ + D
Sbjct: 182 SGSGDRTVRIWD-----LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 431 EANF--ERWIEEEEVIT-------SFSLSKDNKYLLVNLINQEIHLWSIE-----SDPKL 476
E F ER E E T S ++D + ++ +++ + LW+++ SD K
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 477 VS------RYKGHKRARFVIRSCFGGFEQAFIASGSED 508
+ Y GHK FV+ S +I SGS+D
Sbjct: 297 PNSGTCEVTYIGHK--DFVL-SVATTQNDEYILSGSKD 331
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS---------GHRKPV 320
H D V+ + F+ DG+ + S S D+S +W ++ S + GH+ V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
+V+ + ND +L+ ++ + WD SG L
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 23/246 (9%)
Query: 256 GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315
+ I + + ++ H+D V+ FS DG+ +AS D++ +++ E G+ L+ +
Sbjct: 605 NKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKA-ETGEKLLE--IKA 661
Query: 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF 375
H V ++S +D + TC ++ ++ W+ +GE +H Y++ ++C F +
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ-VNCCHFTNSSHHL 720
Query: 376 AGMTDKSIC---LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432
T S C LWDL+ +E + T ++ + D K + S + + L D +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 433 --------------NFERWIEEEEVITS-FSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477
N E E+ EVI S S D ++V N+ I L+ I + L
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLG 839
Query: 478 SRYKGH 483
+ GH
Sbjct: 840 EIHTGH 845
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 233 QRDSCLF---HNTSDSDFSLYSDHQCGR----------NRIPSQTLQILEAHSDEVWFLQ 279
Q D C+F H + DF L + + N I + H V
Sbjct: 1039 QLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCD 1098
Query: 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339
SHD +S+S D++A IW D + L H L GH V ++S + L T
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSF--DLLLPL-HELRGHNGCVRCSAFSVDSTLLATGDDNG 1155
Query: 340 AIRRWDVNSGECLHV 354
IR W+V++GE LH+
Sbjct: 1156 EIRIWNVSNGELLHL 1170
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
NRI Q H VW +QF+ D K L SSS D +W + D + L+ GH+
Sbjct: 999 NRIFQSRFQ----HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR----GHQ 1050
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG 377
+ V N +LL+ + ++ W++ +G + ++SC D +
Sbjct: 1051 ETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 378 MTDKSICLWDLD 389
DK+ +W D
Sbjct: 1110 SADKTAKIWSFD 1121
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 23/235 (9%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
++ H+D V+ FS DG+ +AS D++ +++ E G+ L + H V ++S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD--IKAHEDEVLCCAFS 666
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG---IFAGMTDKSI 383
+D + TC ++ ++ WD +G+ +H Y++ ++C F + + G D +
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFL 725
Query: 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANFERWI---- 438
LWDL+ +E + T ++ + D + + S + + L D R AN + I
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 439 ---------EEEEVITS-FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483
E+ EVI S S D ++V N+ + L+ I + L + GH
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGH 839
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
N I + + H V S D +S+S D++A IW +S H L GH
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHN 1127
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353
V ++S + L T IR W+V+ G+ LH
Sbjct: 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H V +QF+ DGK L SSS+D +W + V L+ H++ V D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQD 1055
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
+LL+ + ++ W+V +G + ++SC D + DK+ +W D
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 23/235 (9%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
++ H+D V+ FS DG+ +AS D++ +++ E G+ L + H V ++S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD--IKAHEDEVLCCAFS 673
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG---IFAGMTDKSI 383
+D + TC ++ ++ WD +G+ +H Y++ ++C F + + G D +
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFL 732
Query: 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANFERWI---- 438
LWDL+ +E + T ++ + D + + S + + L D R AN + I
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 439 ---------EEEEVITS-FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483
E+ EVI S S D ++V N+ + L+ I + L + GH
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGH 846
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317
N I + + H V S D +S+S D++A IW +S H L GH
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHN 1134
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353
V ++S + L T IR W+V+ G+ LH
Sbjct: 1135 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H V +QF+ DGK L SSS+D +W + V L+ H++ V D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQD 1062
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
+LL+ + ++ W+V +G + ++SC D + DK+ +W D
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQS 295
S L + DS S+++ + L I+E H +EV + +S+DG YLA+ S+D+S
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 296 AIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
IWE E G + L H + V V W P++ L + ++ +R W
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 22/145 (15%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL--SGHRKPVFT 322
++ L+ + +++W FS LA+ S D+ + VK D +L L + H+K + +
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRS 63
Query: 323 VSWSPNDHQLLTCG-----------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371
V+W P+ LL G +E A R ++++ + +E G+ W DG
Sbjct: 64 VAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV---AWSNDG 119
Query: 372 GGIFAGMTDKSICLWDLD--GRELE 394
+ DKS+ +W+ D G E E
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYE 144
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 247 FSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306
+ LY + Q G IP + L H+ V L S + + SSS D++ +W+++
Sbjct: 54 WKLYEEEQNGYFGIPHKALT---GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-- 108
Query: 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351
+ R GH+ V++V++SP++ Q+L+ G E I+ W++ GEC
Sbjct: 109 -TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGEC 151
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 267 ILEAHSDEVWFL--QFSH----DGKYLASSSKDQSAIIWEVKE---DGQVSLKHR-LSGH 316
ILE HSD V + FS D L S S+D++ +IW++ E +G + H+ L+GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA 376
V ++ S + ++ ++ +R WD+ +G + + S + D I +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 377 GMTDKSICLWDLDG 390
++ I LW++ G
Sbjct: 136 AGAEREIKLWNILG 149
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKG--QKTLR-----ISDMAITDDGKRIISICREAAIL 426
+ +G DK++ +W L E + G K L +SD+A++ + IS + +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 427 LLDREA--NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481
L D ++R++ + + S + S DN+ +L +EI LW+I + K S K
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 256 GRNRIPSQTLQI---LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301
GR ++ + QI +AH V L S +GKY+A+ KD+ +IW++
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 195
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 31 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
+ LWD+ + QK LR +T R+ S+ + IL
Sbjct: 89 AEVQLWDV--------QQQKRLR----NMTSHSARVGSLSWNSYIL 122
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L L H + V L+F++ + + SKD+S +W++ ++L+ L GHR V
Sbjct: 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V + +D +++ + I+ W+ ++ E + G I+C + D + +G +D +
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-IACLQYRD-RLVVSGSSDNT 317
Query: 383 ICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
I LWD++ G L +G + L I D KRI+S + I + D A +
Sbjct: 318 IRLWDIECGACLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWDLVAALD 368
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 56/262 (21%)
Query: 248 SLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307
++ S+ +CGR+ + Q + S V+ LQ+ D + + S +D + IW+ +
Sbjct: 111 TIESNWRCGRHSL--QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD---KNTL 163
Query: 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGW 367
K L+GH V + + ++ ++T + +R WDVN+GE L+ ++
Sbjct: 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR- 220
Query: 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427
+ G + D+SI +WD+ + TD R + + AA+ +
Sbjct: 221 -FNNGMMVTCSKDRSIAVWDM------------------ASPTDITLRRVLVGHRAAVNV 261
Query: 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR 487
+D D+KY++ ++ I +W+ S + V GHKR
Sbjct: 262 VD---------------------FDDKYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGI 299
Query: 488 FVIRSCFGGFEQAFIASGSEDS 509
++ + + SGS D+
Sbjct: 300 ACLQ-----YRDRLVVSGSSDN 316
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 286
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 122 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
+ LWD+ Q+ R+ +M T R+ S+ + IL
Sbjct: 180 AEVQLWDV----------QQQKRLRNM--TSHSARVGSLSWNSYIL 213
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGH 316
R+ + L HS EV L+++ DG++LAS D +W E G V L+ + H
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 275
Query: 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECL 352
+ V V+W P +L G + IR W+V SG CL
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380
V WS + +L + ++ W +SG+ L + E+ G + S W +G + G +
Sbjct: 111 VDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
+ LWD+ Q+ R+ +M T R+ S+ + IL
Sbjct: 169 AEVQLWDV----------QQQKRLRNM--TSHSARVGSLSWNSYIL 202
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L HS V + S DG++ S S D + +W++ + R GH K V +V++S
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSS 138
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE----------------KTGVGLISCGWFLDG 371
++ Q+++ +++ I+ W+ G C + + + ++SCGW
Sbjct: 139 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---- 193
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-R 430
DK + +W+L +L++ T ++ + ++ DG S ++ +L D
Sbjct: 194 --------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 431 EANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471
E ++ ++I + S N+Y L I +W +E
Sbjct: 246 EGKHLYTLDGGDIINALCFSP-NRYWLCAATGPSIKIWDLE 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 269 EAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
E+HS+ V ++FS + + S D+ +W + LK GH + TV+ S
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVS 224
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386
P+ + G++ WD+N G+ H+Y G +I+ F T SI +W
Sbjct: 225 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282
Query: 387 DLDGR 391
DL+G+
Sbjct: 283 DLEGK 287
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKGQKTLR-----ISDMAITDDGKRIISICREAAILLL 428
I + DK+I +W L E Q+ LR +SD+ I+ DG+ +S + + L
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 429 D--REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469
D R++ + + S + S DN+ ++ ++ I LW+
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 268 LEAHSDEVWFLQFSHDGKY---LASSSKDQSAIIWEVKED-GQVSLKHR-LSGHRKPVFT 322
L+ H+ W Q + ++ + S+S+D++ I+W++ D + R L GH V
Sbjct: 34 LKGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V S + L+ + +R WD+ +G + ++S + D I +G DK+
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 383 ICLWDLDG 390
I LW+ G
Sbjct: 152 IKLWNTLG 159
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + + S DG AS KD A++W++ E + + L G + + +SPN
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGG-DIINALCFSPNR 268
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL---------ISCGWFLDGGGIFAGMTD 380
+ L +I+ WD+ + ++ + S W DG +FAG TD
Sbjct: 269 Y-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 381 KSICLWDL 388
+ +W +
Sbjct: 328 NLVRVWQV 335
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 18/251 (7%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
+ + L+ L H+ VW Q + + S S D++ +W E G+ H L GH
Sbjct: 147 VTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA-ETGECI--HTLYGHTST 201
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379
V + ++ ++++ ++ +R WD+ +G+CLHV V + C + DG + +G
Sbjct: 202 VRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY-DGRRVVSGAY 257
Query: 380 DKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE-ANFERW 437
D + +WD + L + +G T R+ + DG ++S + +I + D E N
Sbjct: 258 DFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT 314
Query: 438 IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497
+ + +TS KDN L+ + + +W I++ L + +K V +C F
Sbjct: 315 LTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--TCL-QF 370
Query: 498 EQAFIASGSED 508
+ F+ + S+D
Sbjct: 371 NKNFVITSSDD 381
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 46/127 (36%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR------- 317
L L+ H++ V+ LQF DG ++ S S D S +W+V+ + H L+GH+
Sbjct: 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI---HTLTGHQSLTSGME 326
Query: 318 -KPVFTVS---------W------------SPNDHQ------------LLTCGQEEAIRR 343
K VS W PN HQ ++T + ++
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 386
Query: 344 WDVNSGE 350
WD+ +GE
Sbjct: 387 WDLKTGE 393
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 98/251 (39%), Gaps = 24/251 (9%)
Query: 265 LQILEAHSD-EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTV 323
L + AH D WFL ++ G LAS D+ IW + D + GH++ V V
Sbjct: 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 324 SWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381
+WSP + L + + W N EC+ E + S W G + DK
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEE 441
S+ +W++D E + ++ L + T D K ++ + + + + + EEE
Sbjct: 128 SVWVWEVD--EEDEYECVSVLN----SHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFE 498
D+ L E +WS+ DP +L S R + R G E
Sbjct: 182 ----------DDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNE 229
Query: 499 QAFIASGSEDS 509
Q SGS+ S
Sbjct: 230 QGVACSGSDPS 240
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
+N+ + + LE H +EV + ++ G LA+ S+D+S +WEV E+ + L+ H
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIR 342
+ V V W P+ L + ++ ++
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVK 175
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L HS V + S DG++ S S D + +W++ + R GH K V +V++S
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSS 115
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE----------------KTGVGLISCGWFLDG 371
++ Q+++ +++ I+ W+ G C + + + ++SCGW
Sbjct: 116 DNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---- 170
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-R 430
DK + +W+L +L++ T ++ + ++ DG S ++ +L D
Sbjct: 171 --------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 431 EANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471
E ++ ++I + S N+Y L I +W +E
Sbjct: 223 EGKHLYTLDGGDIINALCFSP-NRYWLCAATGPSIKIWDLE 262
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 269 EAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
E+HS+ V ++FS + + S D+ +W + LK GH + TV+ S
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVS 201
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386
P+ + G++ WD+N G+ H+Y G +I+ F T SI +W
Sbjct: 202 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 259
Query: 387 DLDGR 391
DL+G+
Sbjct: 260 DLEGK 264
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 374 IFAGMTDKSICLWDLDGRELESWKGQKTLR-----ISDMAITDDGKRIISICREAAILLL 428
I + DK+I +W L E Q+ LR +SD+ I+ DG+ +S + + L
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 429 D--REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469
D R++ + + S + S DN+ ++ ++ I LW+
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 268 LEAHSDEVWFLQFSHDGKY---LASSSKDQSAIIWEVKED-GQVSLKHR-LSGHRKPVFT 322
L+ H+ W Q + ++ + S+S+D++ I+W++ D + R L GH V
Sbjct: 11 LKGHNG--WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382
V S + L+ + +R WD+ +G + ++S + D I +G DK+
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 383 ICLWDLDG 390
I LW+ G
Sbjct: 129 IKLWNTLG 136
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + + S DG AS KD A++W++ E + + L G + + +SPN
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL---YTLDGG-DIINALCFSPNR 245
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL---------ISCGWFLDGGGIFAGMTD 380
+ L +I+ WD+ + ++ + S W DG +FAG TD
Sbjct: 246 Y-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 381 KSICLWDL 388
+ +W +
Sbjct: 305 NLVRVWQV 312
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 42/204 (20%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ +V + FS D + + S+S+D++ +W + + ++ GHR V V +SPN
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389
Q ++S W DK++ +W+L
Sbjct: 530 LQPT----------------------------IVSASW------------DKTVKVWNLS 549
Query: 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW-IEEEEVITSFS 448
+L S T +S +A++ DG S ++ +LL D + + +E VI +
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Query: 449 LSKDNKYLLVNLINQEIHLWSIES 472
S N+Y L I +W +ES
Sbjct: 610 FSP-NRYWLCAATEHGIKIWDLES 632
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H+ V + S DG AS KD ++W++ E ++ + L + + + +SP
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL---YSLEANSV-IHALCFSP 612
Query: 328 NDHQLLTCGQEEAIRRWDV---------------------NSGECLHVYEKTGVGLISCG 366
N + L E I+ WD+ NSG ++ + S
Sbjct: 613 NRY-WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA--ATKRKVIYCTSLN 669
Query: 367 WFLDGGGIFAGMTDKSICLWDLDGR 391
W DG +F+G TD I +W + GR
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGI-GR 693
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 263 QTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-----LSGH 316
+ + ++ H+ V + + H+ +AS S+D + ++WE+ DG + L R L GH
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGH 130
Query: 317 RKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECL-----HVYEKTGVGLISCGWFLD 370
K V V+W P LL+ G + I WDV +G + V+ T + S W D
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDT---IYSVDWSRD 187
Query: 371 GGGIFAGMTDKSI 383
G I DK +
Sbjct: 188 GALICTSCRDKRV 200
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN 328
+ H D ++ + +S DG + +S +D+ + E ++ V+ K R +PV V S
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-- 230
Query: 329 DHQLLTCG----QEEAIRRWDVN 347
+ ++LT G E + WD
Sbjct: 231 EGKILTTGFSRMSERQVALWDTK 253
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 268 LEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
L H VW + ++H G LAS S D+ IIW +E+G H +GH V +V W
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSHEHAGHDSSVNSVCW 111
Query: 326 SPNDHQL-LTCGQEEA 340
+P+D+ L L CG +
Sbjct: 112 APHDYGLILACGSSDG 127
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PN 328
+H D + Q + G LA+ S D+S I++V+ GQ+ L L GH PV+ V+W+ P
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPM 69
Query: 329 DHQLL-TCGQEEAIRRWDVNSGECLHVYEKTG 359
+L +C + + W +G +E G
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAG 101
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN----DHQLLTCGQEEA 340
K AS D +W+ +EDGQ + +L H V V+W+P+ + +C Q+
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 341 IRRW 344
+ W
Sbjct: 240 VFIW 243
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H+ +V L + D + S + D SA +W+V+E + +GH + + + PN +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 250
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTDKSICLWDL 388
T + R +D+ + + L Y + G+ S + G + AG D + +WD
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Query: 389 DGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ R+S + +TDDG + +
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVAT 340
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 109
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 110 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 169
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 229
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
R + E I + + + L+ + +D +L++
Sbjct: 230 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 295 SAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
S I + G++ ++ R L GH ++ + W + L++ Q+ + WD + +
Sbjct: 42 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 101
Query: 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMA 408
H +++C + G + G D +++L RE + T +S
Sbjct: 102 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 161
Query: 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIH 466
DD +I++ + L D E + + S SL+ D + + +
Sbjct: 162 FLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
LW + + + GH+ I CF AF A+GS+D+
Sbjct: 221 LWDVR-EGMCRQTFTGHESDINAI--CFFPNGNAF-ATGSDDA 259
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H+ +V L + D + S + D SA +W+V+E + +GH + + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTDKSICLWDL 388
T + R +D+ + + L Y + G+ S + G + AG D + +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 389 DGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ R+S + +TDDG + +
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
R + E I + + + L+ + +D +L++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 295 SAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
S I + G++ ++ R L GH ++ + W + L++ Q+ + WD + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90
Query: 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMA 408
H +++C + G + G D +++L RE + T +S
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIH 466
DD +I++ + L D E + + S SL+ D + + +
Sbjct: 151 FLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
LW + + + GH+ I CF AF A+GS+D+
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAI--CFFPNGNAF-ATGSDDA 248
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H+ +V L + D + S + D SA +W+V+E + +GH + + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTDKSICLWDL 388
T + R +D+ + + L Y + G+ S + G + AG D + +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 389 DGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ R+S + +TDDG + +
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
R + E I + + + L+ + +D +L++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 295 SAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
S I + G++ ++ R L GH ++ + W + LL+ Q+ + WD + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV 90
Query: 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMA 408
H +++C + G + G D +++L RE + T +S
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIH 466
DD +I++ + L D E + + S SL+ D + + +
Sbjct: 151 FLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
LW + + + GH+ I CF AF A+GS+D+
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAI--CFFPNGNAF-ATGSDDA 248
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H+ +V L + D + S + D SA +W+V+E + +GH + + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTDKSICLWDL 388
T + R +D+ + + L Y + G+ S + G + AG D + +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 389 DGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ R+S + +TDDG + +
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
R + E I + + + L+ + +D +L++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 295 SAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
S I + G++ ++ R L GH ++ + W + LL+ Q+ + WD + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV 90
Query: 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMA 408
H +++C + G + G D +++L RE + T +S
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIH 466
DD +I++ + L D E + + S SL+ D + + +
Sbjct: 151 FLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
LW + + + GH+ I CF AF A+GS+D+
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAI--CFFPNGNAF-ATGSDDA 248
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H+ +V L + D + S + D SA +W+V+E + +GH + + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN 239
Query: 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTDKSICLWDL 388
T + R +D+ + + L Y + G+ S + G + AG D + +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 389 DGRELESWKGQKTLRISDMAITDDGKRIIS 418
+ R+S + +TDDG + +
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI +T + L H +++ + + D + L S+S+D IIW+ +V H +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTG-VGLISCGWFLDGGGIF 375
V T +++P+ + + G + +++ + G E G G +SC FLD I
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
Query: 376 AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435
D + LWD++ + + T + +++ D + +S +A+ L D
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 436 R--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478
R + E I + + + L+ + +D +L++
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 13/223 (5%)
Query: 295 SAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352
S I + G++ ++ R L GH ++ + W + L++ Q+ + WD + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV 90
Query: 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMA 408
H +++C + G + G D +++L RE + T +S
Sbjct: 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIH 466
DD +I++ + L D E + + S SL+ D + + +
Sbjct: 151 FLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509
LW + + + GH+ I CF AF A+GS+D+
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAI--CFFPNGNAF-ATGSDDA 248
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
+I +AH E+ L+F G+ L SSS+D IW VK DG S L GHR V ++
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DG--SNPRTLIGHRATVTDIAI 186
Query: 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357
+L+ + IR W+ +G +H + +
Sbjct: 187 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325
+I +AH E+ L+F G+ L SSS+D IW VK DG S L GHR V ++
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DG--SNPRTLIGHRATVTDIAI 189
Query: 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357
+L+ + IR W+ +G +H + +
Sbjct: 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 31/231 (13%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ ++ + H V + +G ++ S+S+D++ +WEV+ V +GHR+ V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT---FTGHREWVRM 239
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGEC-------LHVYE---------------KTGV 360
V + + + +C ++ +R W V + EC HV E TG
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 361 GLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISI 419
G G + +G DK+I +WD+ G L + G + + GK I+S
Sbjct: 300 ETKKSG--KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSC 356
Query: 420 CREAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468
+ + + D + + E +TS K Y++ ++Q + +W
Sbjct: 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT------GVGLI 363
K+ LSGHR PV V + P +++ ++ I+ WD +G+ +E+T V I
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDI 156
Query: 364 SCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422
S F G + A + D +I LWD G E +S ++I +G I+S R+
Sbjct: 157 S---FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 423 AAILLLDREANF 434
I + + + +
Sbjct: 214 KTIKMWEVQTGY 225
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H V + F + S+S+D + +W+ E G + L GH V +S+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGD--FERTLKGHTDSVQDISFDH 160
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ L +C + I+ WD EC+ + S +G I + DK+I +W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 388 L 388
+
Sbjct: 221 V 221
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-----LSGHRKPVFTVSWSPNDHQ-LLT 334
H+ +AS S+D + ++WE+ DG + L R L GH K V V+W P LL+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 335 CGQEEAIRRWDVNSGECL-----HVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383
G + I WDV +G + V+ T + S W DG I DK +
Sbjct: 150 AGCDNVILVWDVGTGAAVLTLGPDVHPDT---IYSVDWSRDGALICTSCRDKRV 200
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN 328
+ H D ++ + +S DG + +S +D+ + E ++ V+ K R +PV V S
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-- 230
Query: 329 DHQLLTCG----QEEAIRRWDVN 347
+ ++LT G E + WD
Sbjct: 231 EGKILTTGFSRMSERQVALWDTK 253
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEE-AIRRWDVNSG 349
+ GH PV ++W P++ ++ G E+ + W++ G
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 159
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 96 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 155
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 156 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 137 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 196
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 197 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316
N I Q ++ H + + L+F D L S SKD + +W ++ D V++ + GH
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 159
Query: 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT 358
R V + + ++++CG + +++ W +NS ++ +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 258 NRIPSQTLQILEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314
N P + +++ + D + L FS G +L + S WEV++ GQ K +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-Q 83
Query: 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF--LDGG 372
H PV V WS + ++ T ++ + WD++S + + + + + + W +
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP-VKTIHWIKAPNYS 142
Query: 373 GIFAGMTDKSICLWD 387
+ G DK++ WD
Sbjct: 143 CVMTGSWDKTLKFWD 157
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 341 IRRWDV-NSGECLHVYEKTGVG-LISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392
+R W+V +SG+ + ++ G ++ W DG +F DK+ +WDL +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318
RI + + L+ HS EV L + DG LAS D IW+ + K + H
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP---KFTKTNHNA 260
Query: 319 PVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF 375
V V+W P LL G ++ I W+ +G ++ + G + S W I
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIM 319
Query: 376 A--GMTDKSICLW 386
+ G D ++ +W
Sbjct: 320 STHGFPDNNLSIW 332
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L IL H+D ++ + H+ K S+S D + IW++ E+G+ L + L GH V
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL-ENGE--LXYTLQGHTALVGL 357
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370
+ S D L++ + +IR WD N Y T + I+ + D
Sbjct: 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
I + L L H VW L+++H G L S S D++ +W++K+ H GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNST 205
Query: 320 V--FTVSWSPNDHQLLTCGQEEAIRRWDV-------NSGE------CLHVYEKT----GV 360
V + N ++T ++ + W + + GE H E+ GV
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 361 --GLISCGWFLDGGG--IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416
G + + G G + +G D ++ +WD+ + T RI + KR
Sbjct: 266 LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 417 ISICREAAILLLDRE 431
IS + I + D E
Sbjct: 326 ISASXDTTIRIWDLE 340
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 24/150 (16%)
Query: 266 QILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVS----------LKHR- 312
+ E H+ V L + KY+ + S+D + +W++ ++ V + H
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 313 ---------LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363
L GH V TVS N +++ + + WDV +CL++ +
Sbjct: 257 EENPYFVGVLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Query: 364 SCGWFLDGGGIFAGMTDKSICLWDLDGREL 393
S + + + D +I +WDL+ EL
Sbjct: 315 STIYDHERKRCISASXDTTIRIWDLENGEL 344
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 345 DVNSGEC 351
+ +C
Sbjct: 324 SASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 345 DVNSGEC 351
+ +C
Sbjct: 324 SASQWDC 330
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344
+LA++S DQ+ IW++++ G+ S + L HR PV +SP+ +LLT Q+ IR +
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Query: 345 DVNSGEC 351
+ +C
Sbjct: 325 SASQWDC 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L IL H+D ++ + H+ K S+S D + IW++ E+G+ L + L GH V
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL-ENGE--LMYTLQGHTALVGL 357
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370
+ S D L++ + +IR WD N Y T + I+ + D
Sbjct: 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
G + S S D + I+W+V Q+ + LSGH +++ + + ++ + IR
Sbjct: 280 GNIVVSGSYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 344 WDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
WD+ +GE ++ + VGL+ L + + D SI WD
Sbjct: 337 WDLENGELMYTLQGHTALVGLLR----LSDKFLVSAAADGSIRGWD 378
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319
I + L L H VW L+++H G L S S D++ +W++K+ H GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNST 205
Query: 320 V--FTVSWSPNDHQLLTCGQEEAIRRWDV-------NSGE------CLHVYEKT----GV 360
V + N ++T ++ + W + + GE H E+ GV
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 361 --GLISCGWFLDGGG--IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416
G ++ + G G + +G D ++ +WD+ + T RI + KR
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 417 ISICREAAILLLDRE 431
IS + I + D E
Sbjct: 326 ISASMDTTIRIWDLE 340
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/298 (18%), Positives = 111/298 (37%), Gaps = 79/298 (26%)
Query: 244 DSDFSLYSDHQCGRNRI---PSQTL--QILEAHSDEVWFLQFSHDGKYLASSSKDQSAII 298
D+D YS Q GR + P+ + + L+ HS +V+ L ++ + ++ S+S+D I+
Sbjct: 34 DTDVEKYSKAQ-GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIV 92
Query: 299 W----------------------------------------------EVKEDGQVSLKHR 312
W + DG + +
Sbjct: 93 WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152
Query: 313 LSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECL----------HVYEKTGVG 361
L+GH+ + + P+ + +L+T ++ WDV +G+ + H + +
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 362 LISCGWFLDGGGIFAGMTDKSICLWDL--DGRELESWKGQKTLRISDMAITDDGKRIISI 419
+ S L+ +G D ++ LWDL R + ++ G + I+ + DG+R +
Sbjct: 213 INS----LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTG 267
Query: 420 CREAAILLLDREANFERWIEEEE---------VITSFSLSKDNKYLLVNLINQEIHLW 468
+ L D + + E ++TS + S + L N + ++W
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372
L GH V+++ W+P + +++ Q+ + W+ + + H + ++ C + +G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 373 GIFAGMTDKSICLWDL------DGRELES--WKGQKTLRISDMAITDDGKRIISICREAA 424
+ G D + +++L DG S G K S + D R+I+ +
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 425 ILLLDREANFERWIEEEEV-------ITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKL 476
+L D I E + S S++ N + ++ + + LW + +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 477 VSRYKGHK 484
V Y GH+
Sbjct: 242 VRTYHGHE 249
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 18/230 (7%)
Query: 266 QILEAHSDEVWFLQFSHDGKY-LASSSKDQSAIIWEVKEDGQVSL--KHRLSGHRKPVFT 322
++L H Q+ D + L + S DQ+ ++W+V ++S+ SGH V +
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 323 VSW-SPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380
+S S N + ++ + +R WD+ + + Y + S +F DG G D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 381 KSICLWDL-DGRELESWKGQKTLR------ISDMAITDDGKRIISI-----CREAAILLL 428
+ L+D+ G +L+ + + ++ +A + G+ + + C LL
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330
Query: 429 DREANFERWIEEEE-VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477
+ N E I+ LS D L ++ + +W+ K+V
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330
H E+ + FS++G +L ++ + + I + V + +++ + + H V VSWSP++
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 331 QLLTCGQEEAIRRWDVN 347
+L T + ++ W++N
Sbjct: 550 RLATGSLDNSVIVWNMN 566
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 46/244 (18%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------------EDGQV-------- 307
AHS V+ L +S DG +AS+S D++ IW V ED Q+
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 308 ------------------SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349
S+ GH K + +S S + L + E I WD+++G
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD--- 406
V+ +I+ G +F D + + G ++S K S
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416
Query: 407 MAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466
+A++ DG ++ C + I + E I + +LS D +++ V + ++H
Sbjct: 417 LAVSADGDIAVAACYK-HIAIYSHGKLTEVPISYNS--SCVALSNDKQFVAVGGQDSKVH 473
Query: 467 LWSI 470
++ +
Sbjct: 474 VYKL 477
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 23/201 (11%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
+ S S D + I+E K H K V +V ++P+ + G + I ++
Sbjct: 163 IISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 347 NSGECLHVYEKTGV-------GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399
G V+E + + W DG I + DK+I +W++ ++E
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE----- 274
Query: 400 KTL----RISD--MAITDDGKRIISICREAAILLLDREANFERWIE--EEEVITSFSLSK 451
KT+ RI D + I + ++SI I ++ E + + IT+ S S
Sbjct: 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 452 DNKYLLVNLINQEIHLWSIES 472
D K L I+ W I +
Sbjct: 335 DGKTLFSADAEGHINSWDIST 355
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV------SLKHRLSGHRKPVFTVS 324
H+ V ++++ DG AS+ D + +++ + + SLK+ H VF ++
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV--AHSGSVFGLT 246
Query: 325 WSPNDHQLLTCGQEEAIRRWDV 346
WSP+ ++ + ++ I+ W+V
Sbjct: 247 WSPDGTKIASASADKTIKIWNV 268
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 62/285 (21%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV--------------------- 301
+T + L+ H ++V + + D + + SSS+D I+W+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 302 ------------------------KEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337
K + + K ++ H + S++ +D Q+LT
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD------GGGIFAGMTDKSICLWDL-DG 390
+ WDV SG+ L + G ++ LD G +G DK +WD+ G
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLC----LDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVI----TS 446
+ +++++ ++ ++ + G S +A L D A+ E I +E I +S
Sbjct: 231 QCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289
Query: 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491
S + L + I++W + + VS GH+ +R
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILFGHENRVSTLR 333
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 305 GQVSLKHR--LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362
GQ +K R L GH V + W + ++++ Q+ + WD + H +
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV 109
Query: 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK------TLRISDMAITDDGKRI 416
++C + G I G D ++ L + E+ +K T +S + T+ +I
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI 169
Query: 417 ISICREAAILLLDREA 432
++ + L D E+
Sbjct: 170 LTASGDGTCALWDVES 185
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Query: 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337
+ +S DGKYLAS + D I+++ L H L GH P+ ++++SP+ L+T
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397
+ I+ +DV +++ + D + +DKS+ +WD+ R
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLD 429
++ + +G +I+S+ + I + D
Sbjct: 287 FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
LE H V + SH ASSS D +W+++ Q+ + +T+++SP
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSP 132
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+ L T + + V SG+ + + G ++S + DG + +G D I ++D
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 388 L-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD-REANF 434
+ G+ L + +G + I + + D + +++ + I + D + AN
Sbjct: 193 IATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
++ ++A + W L FS D +YLA+ + I+ V+ + ++ L K + +++
Sbjct: 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIA 171
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356
+SP+ L + + I +D+ +G+ LH E
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 111
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 167
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 168 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 430 REANFERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
A + ++EV FSL+ N+Y L I ++S+ DP+ L +
Sbjct: 219 LAAKKAMYTLSAQDEV---FSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 273
Query: 482 GHKRA 486
G+ +A
Sbjct: 274 GYSKA 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 145
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 146 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 201
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 202 GTLIASAGKDGEIMLWNLAA 221
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD ++W + + + LS + VF++++SPN
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDE-VFSLAFSPNR 243
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 244 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 382 SICLWDL 388
I +W +
Sbjct: 303 VIRVWQV 309
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 147
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 148 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 205
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 206 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 260
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 261 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
A + ++EV FSL+ N+Y L I ++S+ DP+ L +
Sbjct: 225 LAAKKAMYTLSAQDEV---FSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 279
Query: 482 GHKRA 486
G+ +A
Sbjct: 280 GYSKA 284
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIMLWNLAA 227
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD ++W + + + LS + VF++++SPN
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDE-VFSLAFSPNR 249
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 250 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 382 SICLWDL 388
I +W +
Sbjct: 309 VIRVWQV 315
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
A + ++EV FSL+ N+Y L I ++S+ DP+ L +
Sbjct: 225 LAAKKAMYTLSAQDEV---FSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 279
Query: 482 GHKRA 486
G+ +A
Sbjct: 280 GYSKA 284
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIMLWNLAA 227
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD ++W + + + LS + VF++++SPN
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDE-VFSLAFSPNR 249
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 250 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 382 SICLWDL 388
I +W +
Sbjct: 309 VIRVWQV 315
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ + L E A + + E V S + S D + L + I +W +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 47/245 (19%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
A + ++EV FSL+ N+Y L I ++S+ DP+ L +
Sbjct: 225 LAAKKAMYTLSAQDEV---FSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 279
Query: 482 GHKRA 486
G+ +A
Sbjct: 280 GYSKA 284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIMLWNLAA 227
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD ++W + + + LS + VF++++SPN
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDE-VFSLAFSPNR 249
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 250 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 382 SICLW 386
I +W
Sbjct: 309 VIRVW 313
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 36/229 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468
+ + L E A + + E V S + S D + L + I +W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVW 313
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H + L+F+ K L S+S D + IW G + ++ GH + + + SW
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNCFYGHSQSIVSASWVG 299
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
+D ++++C + ++R W + L + GV + + DG D + ++D
Sbjct: 300 DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 388 L 388
L
Sbjct: 359 L 359
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ 331
+++V L +SHDG + + ++ +W + +L + L+ HR P+ +V W+ +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLW----NKTGALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 332 LLTCGQEEAIRRWDVNSGECLHVYE 356
+++ E W+V SG + +E
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFE 188
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371
+L GH P+ + ++ + LL+ + +R W +G + + ++S W D
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 372 GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431
I M D S+ LW L L + + I I+ DG++ A+ +D +
Sbjct: 302 KVISCSM-DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY-------AVAFMDGQ 353
Query: 432 AN 433
N
Sbjct: 354 VN 355
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + ++S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIMLWNLAA 227
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 42/229 (18%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVMSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I+L +
Sbjct: 174 ---------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 430 REANFERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPK 475
A + ++EV FSL+ N+Y L I ++S+ DP+
Sbjct: 225 LAAKKAMYTLSAQDEV---FSLAFSPNRYWLAAATATGIKVFSL--DPQ 268
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD ++W + + + LS + VF++++SPN
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM---YTLSAQDE-VFSLAFSPNR 249
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 250 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 382 SICLWDL 388
I +W +
Sbjct: 309 VIRVWQV 315
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 36/231 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIMLWNLAAK-----KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL- 265
Query: 421 REAAILLLDREANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470
+ L+ D F + E S + S D + L + I +W +
Sbjct: 266 -DPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 287 LASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
L S+S+D++ I W++ D Q V ++ GH V + + + L+ ++ +R
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES------WK 397
WDV +GE + + S I +G DK+I +W + G+ L + W
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151
Query: 398 GQKTLRISDMAITDDGKRIISICREAAILLLDR-----EANFERWIEEEEVITSFSLSKD 452
Q + ++ A DD IIS + + + EA+F I I + + S D
Sbjct: 152 SQVRVVPNEKA-DDDSVTIISAGNDKXVKAWNLNQFQIEADF---IGHNSNINTLTASPD 207
Query: 453 NKYLLVNLINQEIHLWSIES 472
+ + EI LW++ +
Sbjct: 208 GTLIASAGKDGEIXLWNLAA 227
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 47/245 (19%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
+ HS V + DG Y S+S D++ +W+V G+ R GH+ V +V
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT-GET--YQRFVGHKSDVXSVDIDK 117
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVY------------------EKTGVGLISCGWFL 369
+++ +++ I+ W + G+CL + V +IS G
Sbjct: 118 KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--- 173
Query: 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429
DK + W+L+ ++E+ I+ + + DG I S ++ I L +
Sbjct: 174 ---------NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 430 ---REANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-----LVSRYK 481
++A + ++E +FS N+Y L I ++S+ DP+ L +
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFS---PNRYWLAAATATGIKVFSL--DPQYLVDDLRPEFA 279
Query: 482 GHKRA 486
G+ +A
Sbjct: 280 GYSKA 284
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
H+ + L S DG +AS+ KD +W + + LS + VF++++SPN
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK---KAXYTLSAQDE-VFSLAFSPNR 249
Query: 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL--------ISCGWFLDGGGIFAGMTDK 381
+ L I+ + ++ + G +S W DG +FAG TD
Sbjct: 250 Y-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 382 SICLWDL 388
I +W +
Sbjct: 309 VIRVWQV 315
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 36/233 (15%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+T Q H +V + + S S+D++ +W +K GQ L GH V
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK--GQC--LATLLGHNDWVSQ 153
Query: 323 VSWSPNDH------QLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGI 374
V PN+ +++ G ++ ++ W++N E + + + ++ DG I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS--PDGTLI 211
Query: 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISD--------------MAITDDGKRIISIC 420
+ D I LW+L + K TL D A T G ++ S+
Sbjct: 212 ASAGKDGEIXLWNLAAK-----KAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 421 REAAILLLDRE-ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472
+ + L E A + + E V S + S D + L + I +W + +
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAV--SLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLH-------VYE 356
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H ++
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 228
Query: 357 KTGVGLISCGWFLDGGGIFAGMT-DKSICLWD 387
+ W L +F + D+ + +WD
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 375
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 376 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLH-------VYE 356
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H ++
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 230
Query: 357 KTGVGLISCGWFLDGGGIFAGMT-DKSICLWD 387
+ W L +F + D+ + +WD
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 262
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + II E I+
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 377
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 378 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLH-------VYE 356
G+ RL GH+K + +SW+PN + LL+ + I WD+N+ H ++
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 232
Query: 357 KTGVGLISCGWFLDGGGIFAGMT-DKSICLWD 387
+ W L +F + D+ + +WD
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 264
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 226 VEKALDVQRDSCLFHN-TSDSDFSLYSDHQCGRNRIPSQTLQI---LEAHSDEVWFLQFS 281
V +A + +++C+ T SD ++ + PS Q L H E + L ++
Sbjct: 135 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 194
Query: 282 HD-GKYLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TC 335
+ YL S+S D + +W++ KE + K+ +GH V V+W L +
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 254
Query: 336 GQEEAIRRWDVNSGEC--------LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387
++ + WD + H E + F+ + G DK++ LWD
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI----LATGSADKTVALWD 310
Query: 388 LDGRELE 394
L +L+
Sbjct: 311 LRNLKLK 317
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + +I E I+
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 399
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ +Q+S H+ LASS D+ +W++ EDG L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFI 369
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 370 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 268 LEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFT 322
L H E + L ++ + +L S+S D + +W++ KE V K +GH V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 323 VSWSPNDHQLL-TCGQEEAIRRWDVNSGEC--------LHVYEKTGVGLISCGWFLDGGG 373
VSW L + ++ + WD S H E + F+
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI---- 288
Query: 374 IFAGMTDKSICLWDLDGRELE 394
+ G DK++ LWDL +L+
Sbjct: 289 LATGSADKTVALWDLRNLKLK 309
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNS 348
G+ + RL GH+K + +SW+PN LL+ + I WD+++
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA 209
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ +IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426
EL G T +ISD + + +I E I+
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 401
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ + +S H+ LASS D+ +W++ EDG L
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI 371
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 372 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSG-------ECLHVYE 356
G+ + RL GH+K + +SW+ N LL+ + + WD+N+G + ++
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 226
Query: 357 KTGVGLISCGWFLDGGGIFAGMT-DKSICLWD 387
+ W L +F + D+ + +WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 258
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 268 LEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFT 322
L H E + L ++ + +L S+S D + +W++ KE V K +GH V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 323 VSWSPNDHQLL-TCGQEEAIRRWDVNSGEC--------LHVYEKTGVGLISCGWFLDGGG 373
V+W L + ++ + WD S H E + F+
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI---- 290
Query: 374 IFAGMTDKSICLWDLDGRELE 394
+ G DK++ LWDL +L+
Sbjct: 291 LATGSADKTVALWDLRNLKLK 311
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 308 SLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDV 346
S H L GHR+ + VSWSP D+ L T + ++ WDV
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 266 QILEAHSDEVWFLQFSHDGKY-LASSSKDQSAIIWEVK-----------EDGQVS--LKH 311
IL+ H E+ + +S Y LA++S D +W+V+ +G+ S ++
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350
+ H V + ++ + LLT G + +R W+ ++GE
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 283 DGKYLASSSKDQSAIIWEVKEDGQVSL----------KHRLSGHRKPVFTVSWSPNDHQL 332
+G+Y+ S D ++++++ + S + HR V TV W P+D +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 333 LTCGQ-EEAIRRWDVNSGECLHVYE 356
T ++ ++ WD N+ + V+
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFN 139
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 265 LQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVK-----------EDGQVSLKHR 312
L E+H DE++ + +S H+ LASS D+ +W++ EDG L
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI 371
Query: 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343
GH + SW+PN+ ++ E+ I +
Sbjct: 372 HGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345
S + DQ IW+ + + H + H V +S++P +L G ++ + WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDL-------------DG 390
+ + + LH +E + W I A TD+ + +WDL DG
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAI 425
EL G T +ISD + + +I E I
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 305 GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSG-------ECLHVYE 356
G+ + RL GH+K + +SW+ N LL+ + + WD+N+G + ++
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 226
Query: 357 KTGVGLISCGWFLDGGGIFAGMT-DKSICLWD 387
+ W L +F + D+ + +WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWD 258
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 268 LEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEV----KEDGQVSLKHRLSGHRKPVFT 322
L H E + L ++ + +L S+S D + +W++ KE V K +GH V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 323 VSWSPNDHQLL-TCGQEEAIRRWDVNSGEC--------LHVYEKTGVGLISCGWFLDGGG 373
V+W L + ++ + WD S H E + F+
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI---- 290
Query: 374 IFAGMTDKSICLWDLDGRELE 394
+ G DK++ LWDL +L+
Sbjct: 291 LATGSADKTVALWDLRNLKLK 311
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS 348
S D S +IW+++ + L+ GH+K + ++ W D H LL+ G++ + W+ S
Sbjct: 236 SDNDPSILIWDLR-NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 349 GECLHVYEKTG 359
E L + G
Sbjct: 295 AEQLSQFPARG 305
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 27/198 (13%)
Query: 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD- 370
+L+GH +P+ V ++ L +C ++ + W +GE L + G W +D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD----GHTGTIWSIDV 82
Query: 371 ---GGGIFAGMTDKSICLWDL-DGRELESWK-------------GQKTLRISDMAITDDG 413
G D SI LWD+ +G+ + +WK G L I D + + G
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 414 K-RIISICREAAILLLDR--EANFERWIEEE--EVITSFSLSKDNKYLLVNLINQEIHLW 468
I I R++A L + E + I E + T S KY++ + +I +
Sbjct: 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202
Query: 469 SIESDPKLVSRYKGHKRA 486
+ ++ + V H+++
Sbjct: 203 DVSNNYEYVDSIDLHEKS 220
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L H + ++++ +G L S SKD SA +W ++ L GH ++++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDC 84
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE 356
+T + +I+ WDV++G+C+ ++
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 23/186 (12%)
Query: 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ L L+ H+ +W + KY + S D S +W+V +GQ + PV
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATWK---SPVPVKR 120
Query: 323 VSWSPNDHQLLTC-----GQEEAIRRWDVNSGECLHVYEK----------TGVGLIS--- 364
V +SP + L +I +++ H K T GL +
Sbjct: 121 VEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180
Query: 365 CGWFLDGGGIFAGMTDKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICREA 423
GW G I AG D I +D+ + E ISDM + D I+ R+
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 424 AILLLD 429
L+D
Sbjct: 241 NSFLVD 246
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327
L + + + L S D K S D + +W++ +L + GH + S
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISN 193
Query: 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383
+ +L T G + +R WD+ G L ++ T + S G+ G + GM ++
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNV 248
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENG 87
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 281 SHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKPVFTVSWSPN---DHQLLTCG 336
+ + + + D IW+ D Q L+ L GH V V+WSP L +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 337 QEEAIRRW--DVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW--DLD 389
Q+ W D G + L EK L W L G + D + LW +L+
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
Query: 390 GR 391
G+
Sbjct: 287 GK 288
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 183 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 234
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 185 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 268 LEAHSDEVW---FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324
L+AH+ VW + FS + K+L +S+ D++ +W+ + + SG V
Sbjct: 138 LQAHNASVWDAKVVSFSEN-KFLTASA-DKTIKLWQNDK-----VIKTFSGIHNDVVRHL 190
Query: 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384
+D ++C + I+ D ++G+ L YE + C L G I + D+++
Sbjct: 191 AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH-ESFVYCIKLLPNGDIVSCGEDRTVR 249
Query: 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEV 443
+W + L+ + I + +G I+ + + + +E + RW E+E+
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCXSNGDIIVG-SSDNLVRIFSQEKS--RWASEDEI 305
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336
LA S+ +Q AII++ +DG++ + +L GH+ + ++SW+P+ +QL+ G
Sbjct: 185 LAVSALEQ-AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 64
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENG 89
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 271 HSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329
HS V L FS H +LAS S+D S + D +S R HR V +WSP +
Sbjct: 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAV----LDSSLSELFRSQAHRDFVRDATWSPLN 311
Query: 330 HQLLT 334
H LLT
Sbjct: 312 HSLLT 316
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK LA+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 268 LEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFT 322
LE HSD V + +S YLAS S+D++ IIW + K L + P ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 323 VSWSPNDHQLLTCGQEEAIRRWDVN 347
SWS + + L G + + W N
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS-CGWFLDGGGIF 375
+P+ +W+ + Q+ C + ++ + + + V+E K G ++ W D I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 376 AGMTDKSICLWDLDGRELESWKGQKT-LRISDMA------------ITDDGKRIISIC 420
TD++ +W L GR +WK LRI+ A G R+ISIC
Sbjct: 69 TCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
H L H V V W+P+ ++++TCG + W +
Sbjct: 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS-CGWFLDGGGIF 375
+P+ +W+ + Q+ C + ++ + + + V+E K G ++ W D I
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 376 AGMTDKSICLWDLDGRELESWKGQKT-LRISDMA------------ITDDGKRIISIC 420
TD++ +W L GR +WK LRI+ A G R+ISIC
Sbjct: 69 TCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346
H L H V + W+P+ ++++TCG + W +
Sbjct: 46 HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL 81
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 298 IWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG 349
IW+ ++ G + S L+G R P+ V PN H + T GQ+ + WDV G
Sbjct: 216 IWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-D 329
H D V L DG S KD S +W++ Q ++ + H V V+ P D
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS---QKAVLKSYNAHSSEVNCVAACPGKD 194
Query: 330 HQLLTCGQEEAIRRWDV 346
L+CG++ I WD
Sbjct: 195 TIFLSCGEDGRILLWDT 211
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 264 TLQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322
+ Q HS + L +S H +LAS S+D + + D S R HR V
Sbjct: 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV----LDADFSEVFRDLSHRDFVTG 316
Query: 323 VSWSPNDHQLLT 334
V+WSP DH T
Sbjct: 317 VAWSPLDHSKFT 328
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK +A+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENG 87
>pdb|2GL5|A Chain A, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
pdb|2GL5|B Chain B, Crystal Structure Of Putative Dehydratase From Salmonella
Thyphimurium
Length = 410
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 367 WFLDGGGIF-AGMTDKSICLWDLDGREL 393
W + GG +F AGM+ I LWD+ G+ L
Sbjct: 87 WGMGGGNVFYAGMSAIDIALWDIKGKYL 114
>pdb|4E6M|A Chain A, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|B Chain B, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|C Chain C, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|D Chain D, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|E Chain E, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|F Chain F, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|G Chain G, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
pdb|4E6M|H Chain H, Crystal Structure Of Putative Dehydratase Protein From
Salmonella Enterica Subsp. Enterica Serovar Typhimurium
(Salmonella Typhimurium)
Length = 423
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 367 WFLDGGGIF-AGMTDKSICLWDLDGREL 393
W + GG +F AGM+ I LWD+ G+ L
Sbjct: 108 WGMGGGNVFYAGMSAIDIALWDIKGKYL 135
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH--RLSGHRKP 319
SQ L IL S E F S +++ +++ +Q + ++DG KH S H K
Sbjct: 4 SQVLHILPKPSYEHAF--NSQRTEFVTTTATNQVELY---EQDGN-GWKHARTFSDHDKI 57
Query: 320 VFTVSWSPNDHQLLTCGQEE 339
V V W+P ++++TC Q+
Sbjct: 58 VTCVDWAPKSNRIVTCSQDR 77
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGGIFAG 377
+F +SW + + T G + IR WDV + +C+ + +K +G G G G
Sbjct: 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314
Query: 378 MT-DKSICLWDLDGREL 393
++ D ++ ++L E+
Sbjct: 315 LSLDGTLNFYELGHDEV 331
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGGIFAG 377
+F +SW + + T G + IR WDV + +C+ + +K +G G G G
Sbjct: 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314
Query: 378 MT-DKSICLWDLDGREL 393
++ D ++ ++L E+
Sbjct: 315 LSLDGTLNFYELGHDEV 331
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
+++AH++ V ++ + G +A+ S+D + I ++G + + R R + + WS
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWS 233
Query: 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356
P+ +L +W LHV+E
Sbjct: 234 PDGSKLAVVSD-----KW------TLHVFE 252
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326
I AH++ + + GK A+ S D++ I+EV+ + L L+GH PV+ V W+
Sbjct: 4 IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA 62
Query: 327 -PNDHQLL-TCGQEEAIRRWDVNSG 349
P +L +C + + W +G
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENG 87
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 414 KRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461
KRI +C + +LL+ E + + + +E++ +F++ D K +V+LI
Sbjct: 183 KRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,855,459
Number of Sequences: 62578
Number of extensions: 647052
Number of successful extensions: 2200
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 355
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)