Query 008717
Match_columns 556
No_of_seqs 807 out of 4115
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 15:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.1E-79 2.3E-84 569.7 35.8 481 48-531 2-484 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.4E-58 3E-63 416.9 29.4 459 61-535 5-485 (508)
3 KOG0273 Beta-transducin family 100.0 2E-44 4.3E-49 340.6 24.0 248 273-530 236-495 (524)
4 KOG0271 Notchless-like WD40 re 100.0 7.1E-43 1.5E-47 321.9 24.2 287 239-532 123-454 (480)
5 KOG0271 Notchless-like WD40 re 100.0 2.5E-41 5.4E-46 311.7 25.3 267 259-532 102-412 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-42 1E-46 320.7 20.0 275 234-515 178-458 (459)
7 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-41 5.5E-46 315.8 19.9 258 270-534 173-435 (459)
8 KOG0279 G protein beta subunit 100.0 4.2E-37 9.1E-42 273.3 29.7 271 238-517 31-313 (315)
9 KOG0316 Conserved WD40 repeat- 100.0 3.5E-37 7.6E-42 267.2 24.5 272 259-537 4-278 (307)
10 KOG0263 Transcription initiati 100.0 1.2E-37 2.7E-42 312.7 24.7 259 257-519 363-651 (707)
11 KOG0315 G-protein beta subunit 100.0 2E-36 4.3E-41 264.6 28.4 278 239-529 14-300 (311)
12 KOG0286 G-protein beta subunit 100.0 8.1E-36 1.8E-40 266.7 30.5 264 263-532 46-318 (343)
13 KOG0279 G protein beta subunit 100.0 8.4E-36 1.8E-40 265.1 28.5 256 264-525 7-270 (315)
14 KOG0286 G-protein beta subunit 100.0 2.8E-35 6.1E-40 263.2 29.8 266 238-515 70-343 (343)
15 KOG0295 WD40 repeat-containing 100.0 1.5E-36 3.3E-41 278.9 20.7 281 230-516 107-405 (406)
16 KOG0265 U5 snRNP-specific prot 100.0 4.6E-36 9.9E-41 269.3 23.3 267 263-533 38-312 (338)
17 KOG0282 mRNA splicing factor [ 100.0 6.8E-36 1.5E-40 284.1 16.6 273 257-533 199-478 (503)
18 KOG0266 WD40 repeat-containing 100.0 1.6E-33 3.6E-38 290.6 32.1 266 265-532 151-425 (456)
19 KOG0285 Pleiotropic regulator 100.0 7.9E-34 1.7E-38 260.1 23.7 260 256-524 135-396 (460)
20 KOG0295 WD40 repeat-containing 100.0 3.5E-34 7.6E-39 263.3 21.3 268 262-536 98-383 (406)
21 KOG0283 WD40 repeat-containing 100.0 8.6E-34 1.9E-38 287.6 25.9 252 264-520 258-579 (712)
22 KOG0263 Transcription initiati 100.0 3.4E-33 7.4E-38 280.9 24.5 208 263-473 442-651 (707)
23 KOG0291 WD40-repeat-containing 100.0 2.3E-32 5.1E-37 272.2 30.1 258 264-526 342-621 (893)
24 KOG0291 WD40-repeat-containing 100.0 4.7E-32 1E-36 270.0 31.3 284 232-522 266-555 (893)
25 KOG0318 WD40 repeat stress pro 100.0 2.4E-31 5.2E-36 255.3 31.7 259 259-520 177-563 (603)
26 KOG0266 WD40 repeat-containing 100.0 7.1E-32 1.5E-36 278.5 30.3 275 237-517 165-454 (456)
27 KOG0273 Beta-transducin family 100.0 7.6E-32 1.7E-36 255.5 26.9 270 239-517 243-523 (524)
28 KOG0284 Polyadenylation factor 100.0 1.8E-33 3.9E-38 262.1 15.3 268 236-517 109-380 (464)
29 cd00200 WD40 WD40 domain, foun 100.0 1.5E-30 3.2E-35 252.7 34.2 258 266-530 3-262 (289)
30 KOG0645 WD40 repeat protein [G 100.0 8.2E-31 1.8E-35 232.4 28.9 245 264-518 6-262 (312)
31 KOG0284 Polyadenylation factor 100.0 9.5E-33 2E-37 257.3 16.7 256 269-532 93-353 (464)
32 KOG0315 G-protein beta subunit 100.0 4E-31 8.6E-36 231.5 25.7 240 285-532 11-261 (311)
33 KOG0276 Vesicle coat complex C 100.0 2.2E-31 4.8E-36 260.0 23.4 249 266-521 7-261 (794)
34 KOG0296 Angio-associated migra 100.0 2.2E-30 4.8E-35 238.5 28.2 248 262-517 96-398 (399)
35 KOG0293 WD40 repeat-containing 100.0 6E-31 1.3E-35 245.4 24.1 426 62-518 48-514 (519)
36 KOG0640 mRNA cleavage stimulat 100.0 3.8E-30 8.3E-35 231.8 25.9 323 210-534 39-401 (430)
37 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-29 3.1E-34 229.9 29.7 258 264-528 6-273 (311)
38 KOG0645 WD40 repeat protein [G 100.0 1.5E-29 3.2E-34 224.4 28.6 269 237-517 29-311 (312)
39 cd00200 WD40 WD40 domain, foun 100.0 1.3E-29 2.9E-34 245.9 31.5 246 263-515 42-289 (289)
40 KOG0292 Vesicle coat complex C 100.0 1.4E-30 3.1E-35 263.2 24.9 281 235-523 13-327 (1202)
41 KOG0319 WD40-repeat-containing 100.0 9.6E-31 2.1E-35 260.5 22.7 272 262-540 94-600 (775)
42 KOG0281 Beta-TrCP (transducin 100.0 2.2E-31 4.8E-36 243.1 14.8 259 246-522 210-482 (499)
43 KOG0319 WD40-repeat-containing 100.0 2.1E-30 4.5E-35 258.2 22.7 256 259-518 352-620 (775)
44 KOG0265 U5 snRNP-specific prot 100.0 1.1E-29 2.4E-34 228.3 25.1 266 236-515 60-336 (338)
45 KOG0282 mRNA splicing factor [ 100.0 7.7E-31 1.7E-35 249.7 18.0 265 237-515 229-503 (503)
46 PLN00181 protein SPA1-RELATED; 100.0 5.5E-29 1.2E-33 275.9 35.4 248 268-521 479-742 (793)
47 KOG0281 Beta-TrCP (transducin 100.0 1.4E-31 3E-36 244.4 11.7 231 271-520 196-431 (499)
48 KOG0288 WD40 repeat protein Ti 100.0 4.3E-31 9.3E-36 246.7 14.6 270 253-529 156-429 (459)
49 KOG1407 WD40 repeat protein [F 100.0 2.3E-29 5E-34 222.0 23.9 269 266-541 14-287 (313)
50 KOG0313 Microtubule binding pr 100.0 1.7E-29 3.7E-34 233.7 24.2 267 236-516 116-417 (423)
51 KOG0643 Translation initiation 100.0 1.1E-28 2.5E-33 218.3 26.3 243 267-518 5-318 (327)
52 KOG0285 Pleiotropic regulator 100.0 4.2E-29 9.2E-34 229.2 24.3 290 218-517 139-439 (460)
53 KOG0318 WD40 repeat stress pro 100.0 3.6E-28 7.9E-33 233.5 31.3 254 263-523 50-356 (603)
54 KOG0292 Vesicle coat complex C 100.0 1.3E-29 2.8E-34 256.3 22.3 253 267-525 4-288 (1202)
55 KOG0289 mRNA splicing factor [ 100.0 3.5E-28 7.5E-33 228.5 30.2 249 262-516 251-505 (506)
56 KOG0296 Angio-associated migra 100.0 6.7E-29 1.4E-33 228.8 24.8 263 263-529 55-328 (399)
57 PTZ00421 coronin; Provisional 100.0 6.4E-28 1.4E-32 248.1 34.0 253 271-525 19-298 (493)
58 PLN00181 protein SPA1-RELATED; 100.0 1.6E-27 3.4E-32 264.3 38.5 239 271-516 531-792 (793)
59 KOG0276 Vesicle coat complex C 100.0 1.4E-28 3.1E-33 240.4 24.4 269 237-512 19-294 (794)
60 KOG0277 Peroxisomal targeting 100.0 4.5E-29 9.7E-34 219.3 18.0 241 271-516 59-308 (311)
61 KOG0772 Uncharacterized conser 100.0 1.8E-28 3.9E-33 234.8 22.5 273 257-530 152-458 (641)
62 KOG0294 WD40 repeat-containing 100.0 1.9E-27 4E-32 215.3 27.0 248 262-519 33-283 (362)
63 PTZ00420 coronin; Provisional 100.0 1E-26 2.2E-31 240.2 35.5 228 290-522 50-298 (568)
64 KOG0278 Serine/threonine kinas 100.0 7.1E-29 1.5E-33 217.4 15.4 255 257-521 44-301 (334)
65 PTZ00421 coronin; Provisional 100.0 1.5E-26 3.3E-31 238.0 34.1 215 266-481 69-299 (493)
66 KOG0316 Conserved WD40 repeat- 100.0 3.6E-27 7.7E-32 205.1 24.6 259 239-515 33-297 (307)
67 KOG0306 WD40-repeat-containing 100.0 2.1E-27 4.6E-32 236.9 26.5 261 245-521 394-668 (888)
68 KOG0305 Anaphase promoting com 100.0 3.4E-27 7.3E-32 234.1 27.4 277 227-520 180-464 (484)
69 KOG0275 Conserved WD40 repeat- 100.0 1.3E-28 2.8E-33 223.1 14.9 278 231-515 213-507 (508)
70 KOG0274 Cdc4 and related F-box 100.0 8.3E-27 1.8E-31 240.1 29.5 251 259-525 235-490 (537)
71 KOG0313 Microtubule binding pr 100.0 8E-27 1.7E-31 216.1 23.2 262 260-532 94-392 (423)
72 KOG0973 Histone transcription 100.0 1.2E-26 2.6E-31 241.6 26.1 275 244-522 36-360 (942)
73 PTZ00420 coronin; Provisional 100.0 1.5E-25 3.3E-30 231.5 33.7 210 263-473 65-295 (568)
74 KOG0306 WD40-repeat-containing 100.0 1.8E-26 3.8E-31 230.4 24.5 263 266-541 367-643 (888)
75 KOG0310 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 221.9 21.4 245 265-518 61-310 (487)
76 KOG0647 mRNA export protein (c 100.0 7E-26 1.5E-30 204.1 25.3 257 269-530 24-294 (347)
77 KOG1332 Vesicle coat complex C 99.9 9.4E-27 2E-31 203.7 18.6 247 268-517 7-286 (299)
78 KOG0288 WD40 repeat protein Ti 99.9 3.2E-27 6.8E-32 220.9 15.9 243 263-514 210-458 (459)
79 KOG0641 WD40 repeat protein [G 99.9 5.4E-25 1.2E-29 190.3 28.1 253 261-517 78-349 (350)
80 KOG0289 mRNA splicing factor [ 99.9 4.8E-26 1E-30 214.2 23.4 243 273-521 220-466 (506)
81 KOG0308 Conserved WD40 repeat- 99.9 8E-27 1.7E-31 229.5 18.0 239 277-519 29-287 (735)
82 KOG0274 Cdc4 and related F-box 99.9 1.2E-25 2.6E-30 231.5 27.4 244 271-528 207-452 (537)
83 KOG0299 U3 snoRNP-associated p 99.9 4.8E-26 1.1E-30 215.9 22.0 252 265-519 135-412 (479)
84 KOG0277 Peroxisomal targeting 99.9 7.1E-26 1.5E-30 199.3 20.8 239 276-519 12-267 (311)
85 KOG0300 WD40 repeat-containing 99.9 5.9E-26 1.3E-30 205.4 20.4 267 246-525 127-436 (481)
86 KOG0268 Sof1-like rRNA process 99.9 6.6E-27 1.4E-31 215.3 13.5 246 263-518 57-346 (433)
87 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.7E-30 215.5 21.8 270 239-515 183-485 (641)
88 KOG0310 Conserved WD40 repeat- 99.9 8.6E-26 1.9E-30 215.8 20.5 245 271-523 25-274 (487)
89 KOG0643 Translation initiation 99.9 2E-25 4.2E-30 197.8 21.1 232 237-472 16-318 (327)
90 KOG0278 Serine/threonine kinas 99.9 5E-26 1.1E-30 199.6 14.8 257 265-531 7-269 (334)
91 KOG0264 Nucleosome remodeling 99.9 6.1E-25 1.3E-29 208.6 22.0 246 270-518 122-405 (422)
92 KOG1446 Histone H3 (Lys4) meth 99.9 3.5E-23 7.7E-28 188.4 31.7 249 261-520 45-306 (311)
93 KOG0640 mRNA cleavage stimulat 99.9 5.6E-25 1.2E-29 198.6 18.9 251 263-517 163-426 (430)
94 KOG0973 Histone transcription 99.9 2.3E-24 5E-29 224.7 25.0 251 271-525 12-320 (942)
95 KOG0269 WD40 repeat-containing 99.9 1.5E-25 3.4E-30 224.6 15.2 243 274-518 89-341 (839)
96 KOG0641 WD40 repeat protein [G 99.9 6.7E-23 1.5E-27 177.4 29.2 251 263-519 24-305 (350)
97 KOG0300 WD40 repeat-containing 99.9 2.8E-24 6E-29 194.6 21.5 263 251-519 168-478 (481)
98 KOG0299 U3 snoRNP-associated p 99.9 2.7E-24 5.9E-29 204.1 21.4 231 269-505 199-443 (479)
99 KOG1273 WD40 repeat protein [G 99.9 5E-24 1.1E-28 193.0 22.1 265 259-530 12-293 (405)
100 KOG1407 WD40 repeat protein [F 99.9 2.7E-23 5.9E-28 183.8 25.6 232 267-508 59-293 (313)
101 KOG0283 WD40 repeat-containing 99.9 2E-24 4.4E-29 219.7 20.9 217 309-530 258-545 (712)
102 KOG2096 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 191.1 21.7 243 265-515 79-400 (420)
103 KOG0308 Conserved WD40 repeat- 99.9 2.1E-24 4.5E-29 212.6 18.3 279 233-519 35-329 (735)
104 KOG1036 Mitotic spindle checkp 99.9 6.3E-23 1.4E-27 185.9 25.4 256 271-535 12-280 (323)
105 KOG0301 Phospholipase A2-activ 99.9 1.9E-23 4.2E-28 207.3 23.2 243 263-517 5-249 (745)
106 KOG0639 Transducin-like enhanc 99.9 5.3E-24 1.2E-28 203.6 18.1 263 245-516 440-703 (705)
107 KOG0301 Phospholipase A2-activ 99.9 4E-23 8.6E-28 205.1 24.8 263 234-518 24-289 (745)
108 KOG2445 Nuclear pore complex c 99.9 1.6E-22 3.4E-27 183.0 25.7 245 269-517 10-318 (361)
109 KOG0264 Nucleosome remodeling 99.9 2.8E-23 6E-28 197.4 21.1 237 235-472 137-405 (422)
110 KOG1408 WD40 repeat protein [F 99.9 2.2E-23 4.7E-28 207.0 21.2 277 235-518 392-714 (1080)
111 KOG1274 WD40 repeat protein [G 99.9 2.4E-22 5.2E-27 205.6 27.2 244 269-518 10-263 (933)
112 KOG0294 WD40 repeat-containing 99.9 1.9E-22 4E-27 183.1 23.3 260 287-555 4-276 (362)
113 KOG2048 WD40 repeat protein [G 99.9 8.9E-22 1.9E-26 195.3 30.2 279 268-554 21-313 (691)
114 KOG0646 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 193.6 22.6 247 285-537 51-327 (476)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.3E-21 1.2E-25 188.2 35.8 268 240-526 6-288 (300)
116 KOG0321 WD40 repeat-containing 99.9 9.9E-23 2.1E-27 200.5 22.2 279 238-520 67-394 (720)
117 KOG1036 Mitotic spindle checkp 99.9 2.4E-22 5.2E-27 182.1 22.4 261 235-507 17-294 (323)
118 KOG1408 WD40 repeat protein [F 99.9 1.4E-22 3.1E-27 201.2 22.6 297 234-532 327-686 (1080)
119 KOG2055 WD40 repeat protein [G 99.9 8.3E-23 1.8E-27 194.0 19.9 320 195-517 170-512 (514)
120 KOG0647 mRNA export protein (c 99.9 1E-21 2.2E-26 177.3 25.1 254 236-505 41-311 (347)
121 KOG1332 Vesicle coat complex C 99.9 1.4E-22 2.9E-27 177.7 18.9 230 237-471 25-286 (299)
122 KOG0646 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 193.2 20.3 217 271-492 80-327 (476)
123 KOG0267 Microtubule severing p 99.9 3.3E-24 7.2E-29 213.5 8.9 237 266-509 22-260 (825)
124 KOG0305 Anaphase promoting com 99.9 4.7E-22 1E-26 197.6 22.7 242 277-530 182-432 (484)
125 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.8E-25 180.8 31.3 270 235-515 204-519 (626)
126 KOG0639 Transducin-like enhanc 99.9 1.5E-22 3.2E-27 193.7 17.4 248 270-523 417-669 (705)
127 KOG4283 Transcription-coupled 99.9 1.6E-21 3.4E-26 175.3 22.7 206 268-474 39-279 (397)
128 KOG1539 WD repeat protein [Gen 99.9 3.4E-22 7.4E-27 202.2 20.6 293 219-517 276-648 (910)
129 KOG4328 WD40 protein [Function 99.9 6.1E-22 1.3E-26 188.0 20.8 265 263-529 177-462 (498)
130 KOG0650 WD40 repeat nucleolar 99.9 4.7E-22 1E-26 194.3 19.4 255 258-514 386-732 (733)
131 KOG0270 WD40 repeat-containing 99.9 7.3E-22 1.6E-26 186.9 19.7 240 283-526 191-458 (463)
132 KOG1539 WD repeat protein [Gen 99.9 1.4E-20 3E-25 190.7 29.1 267 250-523 179-612 (910)
133 KOG4283 Transcription-coupled 99.9 8.3E-21 1.8E-25 170.7 22.8 279 234-521 55-369 (397)
134 KOG0269 WD40 repeat-containing 99.9 7.3E-22 1.6E-26 198.5 17.3 253 274-531 41-311 (839)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-19 4.2E-24 177.1 31.3 234 284-525 1-245 (300)
136 KOG0321 WD40 repeat-containing 99.9 4.7E-21 1E-25 188.8 19.3 244 277-521 54-351 (720)
137 KOG2055 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 178.8 21.9 262 272-538 213-488 (514)
138 KOG0268 Sof1-like rRNA process 99.9 1.5E-21 3.2E-26 180.3 14.5 225 238-472 82-346 (433)
139 KOG0267 Microtubule severing p 99.9 2.4E-22 5.3E-27 200.3 9.3 197 264-463 62-260 (825)
140 KOG2919 Guanine nucleotide-bin 99.9 3.2E-20 6.9E-25 169.1 21.5 244 277-522 54-333 (406)
141 KOG1063 RNA polymerase II elon 99.9 2.3E-20 5.1E-25 185.5 22.0 286 230-519 273-650 (764)
142 KOG0302 Ribosome Assembly prot 99.9 3.1E-20 6.8E-25 172.4 21.0 205 268-472 147-379 (440)
143 KOG2106 Uncharacterized conser 99.9 3.2E-19 6.9E-24 171.3 26.1 278 233-524 255-588 (626)
144 KOG1274 WD40 repeat protein [G 99.9 1.7E-19 3.6E-24 185.0 25.7 258 238-514 28-297 (933)
145 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-20 7.3E-25 177.5 18.8 219 275-497 82-305 (673)
146 KOG1445 Tumor-specific antigen 99.9 1.4E-20 3.1E-25 184.7 16.6 128 263-390 70-201 (1012)
147 KOG1007 WD repeat protein TSSC 99.8 7.7E-20 1.7E-24 164.2 18.8 248 266-517 57-361 (370)
148 KOG4378 Nuclear protein COP1 [ 99.8 4.9E-20 1.1E-24 176.4 17.6 253 274-533 36-297 (673)
149 KOG1034 Transcriptional repres 99.8 4.3E-20 9.3E-25 168.7 15.6 243 270-518 87-384 (385)
150 KOG1273 WD40 repeat protein [G 99.8 2.9E-19 6.2E-24 162.3 20.6 276 234-518 26-323 (405)
151 KOG0307 Vesicle coat complex C 99.8 9.9E-21 2.2E-25 198.6 12.7 246 272-520 64-330 (1049)
152 KOG0302 Ribosome Assembly prot 99.8 1E-19 2.3E-24 168.9 17.6 207 260-468 199-435 (440)
153 KOG0303 Actin-binding protein 99.8 3.7E-19 8E-24 166.2 20.5 206 267-473 76-296 (472)
154 KOG1538 Uncharacterized conser 99.8 1.5E-19 3.3E-24 178.5 18.6 248 260-520 41-296 (1081)
155 KOG2096 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 159.8 21.1 212 311-525 80-368 (420)
156 KOG1063 RNA polymerase II elon 99.8 1.2E-18 2.6E-23 173.4 24.2 271 241-520 165-605 (764)
157 KOG1009 Chromatin assembly com 99.8 1.3E-18 2.7E-23 163.4 22.8 281 237-522 28-377 (434)
158 KOG1034 Transcriptional repres 99.8 7.3E-19 1.6E-23 160.7 18.4 251 267-521 33-341 (385)
159 KOG2048 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 165.6 29.0 244 265-518 61-320 (691)
160 KOG0303 Actin-binding protein 99.8 1.8E-18 3.9E-23 161.7 21.3 236 283-521 43-298 (472)
161 KOG4328 WD40 protein [Function 99.8 1.7E-18 3.6E-23 164.8 20.9 278 236-517 191-495 (498)
162 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-19 7.3E-24 173.8 15.1 254 267-524 289-568 (577)
163 KOG0307 Vesicle coat complex C 99.8 1.1E-19 2.4E-24 190.8 12.3 253 276-531 10-298 (1049)
164 KOG0322 G-protein beta subunit 99.8 1.1E-18 2.4E-23 155.0 15.5 248 260-516 2-322 (323)
165 KOG0270 WD40 repeat-containing 99.8 1E-17 2.2E-22 159.1 20.7 200 320-521 176-408 (463)
166 PRK11028 6-phosphogluconolacto 99.8 5.7E-16 1.2E-20 154.7 34.2 273 240-521 7-310 (330)
167 KOG2919 Guanine nucleotide-bin 99.8 3E-17 6.4E-22 149.9 21.6 281 224-509 50-362 (406)
168 COG2319 FOG: WD40 repeat [Gene 99.8 6.2E-16 1.4E-20 158.6 34.2 255 266-526 59-323 (466)
169 KOG1188 WD40 repeat protein [G 99.8 9.3E-18 2E-22 154.4 16.9 186 285-473 41-244 (376)
170 KOG0290 Conserved WD40 repeat- 99.8 4.8E-17 1E-21 146.5 19.6 242 273-518 45-319 (364)
171 KOG0650 WD40 repeat nucleolar 99.8 1.6E-17 3.4E-22 162.9 17.8 238 309-552 392-727 (733)
172 KOG1523 Actin-related protein 99.8 1.5E-16 3.2E-21 145.4 22.8 239 267-509 5-270 (361)
173 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-15 4.7E-20 154.5 34.5 250 264-520 100-362 (466)
174 KOG1587 Cytoplasmic dynein int 99.8 8.6E-17 1.9E-21 164.9 23.3 246 271-519 241-518 (555)
175 KOG4227 WD40 repeat protein [G 99.8 3.9E-17 8.4E-22 152.4 18.5 250 265-517 49-322 (609)
176 KOG0649 WD40 repeat protein [G 99.8 2.4E-16 5.2E-21 138.6 22.1 234 273-519 11-276 (325)
177 KOG1009 Chromatin assembly com 99.8 1.2E-16 2.7E-21 150.2 21.7 251 272-523 13-335 (434)
178 KOG2445 Nuclear pore complex c 99.8 3.1E-16 6.8E-21 142.4 22.9 230 236-471 26-318 (361)
179 KOG1334 WD40 repeat protein [G 99.8 9.8E-18 2.1E-22 160.8 13.8 264 265-530 135-437 (559)
180 KOG0644 Uncharacterized conser 99.8 1.9E-18 4.1E-23 175.0 9.3 246 264-521 182-472 (1113)
181 KOG1538 Uncharacterized conser 99.8 4.5E-17 9.8E-22 161.3 18.4 231 274-518 14-253 (1081)
182 KOG0771 Prolactin regulatory e 99.8 1.5E-17 3.3E-22 157.3 14.4 192 276-472 148-355 (398)
183 KOG0642 Cell-cycle nuclear pro 99.7 2.1E-17 4.5E-22 161.4 14.6 244 239-484 302-573 (577)
184 PRK01742 tolB translocation pr 99.7 2.5E-16 5.4E-21 162.4 22.3 222 262-497 193-425 (429)
185 KOG1445 Tumor-specific antigen 99.7 8.5E-17 1.8E-21 158.5 16.1 239 280-521 587-848 (1012)
186 PRK01742 tolB translocation pr 99.7 9.7E-16 2.1E-20 158.0 23.6 224 293-531 183-417 (429)
187 KOG0649 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 126.9 27.1 266 237-514 24-313 (325)
188 KOG1240 Protein kinase contain 99.7 3.4E-15 7.3E-20 157.7 26.2 263 258-522 1034-1339(1431)
189 PRK03629 tolB translocation pr 99.7 8E-15 1.7E-19 150.9 26.8 216 264-487 190-420 (429)
190 PRK11028 6-phosphogluconolacto 99.7 3.7E-14 8E-19 141.6 30.5 226 289-518 7-259 (330)
191 KOG1517 Guanine nucleotide bin 99.7 3.7E-15 8E-20 155.1 23.0 244 273-520 1110-1384(1387)
192 KOG0290 Conserved WD40 repeat- 99.7 1.9E-15 4.1E-20 136.3 17.9 233 270-507 94-356 (364)
193 KOG2110 Uncharacterized conser 99.7 3.4E-14 7.5E-19 132.5 26.5 237 272-520 5-251 (391)
194 KOG1517 Guanine nucleotide bin 99.7 1.3E-14 2.8E-19 151.2 24.7 268 273-544 1065-1363(1387)
195 KOG1524 WD40 repeat-containing 99.7 1.3E-15 2.8E-20 147.8 16.2 206 286-515 77-284 (737)
196 KOG1310 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 150.5 13.8 211 265-478 43-310 (758)
197 KOG1524 WD40 repeat-containing 99.7 7.7E-16 1.7E-20 149.3 14.2 190 262-468 94-283 (737)
198 PRK03629 tolB translocation pr 99.7 6.2E-14 1.4E-18 144.3 29.1 224 294-530 179-418 (429)
199 KOG1963 WD40 repeat protein [G 99.7 2.9E-14 6.4E-19 146.6 26.1 248 270-520 203-490 (792)
200 PRK04922 tolB translocation pr 99.7 2.1E-14 4.6E-19 148.3 25.4 216 262-485 193-423 (433)
201 KOG1523 Actin-related protein 99.7 3.7E-15 8E-20 136.3 17.0 192 262-453 45-261 (361)
202 KOG2139 WD40 repeat protein [G 99.7 5.2E-14 1.1E-18 130.8 24.5 267 237-517 112-431 (445)
203 PRK05137 tolB translocation pr 99.7 3.4E-14 7.3E-19 147.0 26.3 207 261-473 190-414 (435)
204 KOG1007 WD repeat protein TSSC 99.7 3.2E-15 6.8E-20 134.7 15.8 222 292-517 38-289 (370)
205 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.3E-20 143.9 14.3 194 321-519 148-356 (398)
206 PRK02889 tolB translocation pr 99.6 4.1E-14 8.9E-19 145.8 25.4 217 262-486 185-416 (427)
207 PRK05137 tolB translocation pr 99.6 1.6E-13 3.5E-18 141.9 29.6 218 294-523 182-418 (435)
208 KOG1188 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 133.5 17.5 192 330-523 41-248 (376)
209 KOG1963 WD40 repeat protein [G 99.6 8.2E-14 1.8E-18 143.4 24.4 247 270-523 14-381 (792)
210 PRK04922 tolB translocation pr 99.6 1.7E-13 3.6E-18 141.7 26.6 216 294-521 184-415 (433)
211 KOG2394 WD40 protein DMR-N9 [G 99.6 4.1E-14 8.9E-19 137.7 20.0 246 274-523 125-458 (636)
212 KOG1272 WD40-repeat-containing 99.6 2.8E-15 6E-20 143.3 11.4 229 275-518 132-364 (545)
213 KOG2110 Uncharacterized conser 99.6 1.2E-12 2.7E-17 122.2 28.2 190 274-472 48-249 (391)
214 PRK02889 tolB translocation pr 99.6 5.7E-13 1.2E-17 137.3 28.6 223 294-529 176-414 (427)
215 KOG4227 WD40 repeat protein [G 99.6 8.9E-14 1.9E-18 130.2 20.0 273 240-517 73-387 (609)
216 KOG1310 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 140.8 14.6 211 310-521 43-307 (758)
217 KOG0322 G-protein beta subunit 99.6 3.2E-14 7E-19 126.8 15.1 230 232-470 22-322 (323)
218 KOG0644 Uncharacterized conser 99.6 1E-15 2.2E-20 155.6 6.2 210 308-524 181-433 (1113)
219 KOG1587 Cytoplasmic dynein int 99.6 3.8E-13 8.3E-18 138.2 24.9 224 293-522 221-477 (555)
220 KOG4497 Uncharacterized conser 99.6 1.1E-14 2.4E-19 133.5 11.6 219 277-515 13-238 (447)
221 PF08662 eIF2A: Eukaryotic tra 99.6 3.1E-13 6.6E-18 122.9 20.7 154 321-479 9-185 (194)
222 KOG2111 Uncharacterized conser 99.6 3.1E-12 6.8E-17 117.3 26.1 235 274-520 7-259 (346)
223 KOG2139 WD40 repeat protein [G 99.6 4.7E-13 1E-17 124.5 20.5 191 274-470 100-308 (445)
224 KOG1354 Serine/threonine prote 99.6 4.9E-13 1.1E-17 123.6 20.2 248 271-521 24-363 (433)
225 KOG3881 Uncharacterized conser 99.6 4.2E-13 9.1E-18 126.1 20.1 247 271-525 54-328 (412)
226 PF08662 eIF2A: Eukaryotic tra 99.6 3.9E-13 8.5E-18 122.2 19.1 152 363-521 9-183 (194)
227 KOG2321 WD40 repeat protein [G 99.6 3.3E-13 7.2E-18 132.4 19.5 241 271-518 50-344 (703)
228 TIGR02800 propeller_TolB tol-p 99.5 4E-12 8.6E-17 131.5 28.8 214 294-519 170-399 (417)
229 KOG1240 Protein kinase contain 99.5 7.6E-13 1.6E-17 140.3 23.2 214 308-522 1039-1278(1431)
230 PRK00178 tolB translocation pr 99.5 2.8E-12 6E-17 133.0 26.8 213 263-483 189-416 (430)
231 PF10282 Lactonase: Lactonase, 99.5 9.9E-11 2.1E-15 117.2 36.8 252 271-525 35-332 (345)
232 PF02239 Cytochrom_D1: Cytochr 99.5 2E-11 4.2E-16 122.2 31.4 270 243-526 14-356 (369)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 9E-14 2E-18 135.3 13.5 140 272-411 219-384 (636)
234 TIGR02800 propeller_TolB tol-p 99.5 2.5E-12 5.4E-17 133.0 24.6 203 263-471 180-397 (417)
235 PRK04792 tolB translocation pr 99.5 6E-12 1.3E-16 130.2 25.5 212 266-485 211-437 (448)
236 PRK00178 tolB translocation pr 99.5 1.8E-11 3.8E-16 126.9 27.6 215 295-521 180-410 (430)
237 PRK04792 tolB translocation pr 99.5 2.1E-11 4.5E-16 126.1 27.3 214 295-520 199-428 (448)
238 KOG2111 Uncharacterized conser 99.5 5.9E-11 1.3E-15 109.1 26.6 230 230-473 11-258 (346)
239 KOG1832 HIV-1 Vpr-binding prot 99.5 3.2E-14 6.9E-19 145.5 5.9 282 219-529 1012-1303(1516)
240 KOG3881 Uncharacterized conser 99.5 2.7E-12 5.9E-17 120.8 18.0 206 270-480 103-328 (412)
241 KOG1334 WD40 repeat protein [G 99.5 7.8E-13 1.7E-17 127.5 14.2 275 236-520 155-469 (559)
242 PRK01029 tolB translocation pr 99.4 4.9E-11 1.1E-15 122.4 25.9 204 265-473 177-405 (428)
243 KOG1272 WD40-repeat-containing 99.4 3.6E-13 7.8E-18 129.0 8.4 196 319-522 131-328 (545)
244 KOG2315 Predicted translation 99.4 4.1E-11 8.8E-16 118.0 22.3 239 272-523 34-396 (566)
245 KOG0974 WD-repeat protein WDR6 99.4 4.5E-12 9.8E-17 132.9 16.4 153 277-434 138-291 (967)
246 PF02239 Cytochrom_D1: Cytochr 99.4 5.4E-10 1.2E-14 111.9 30.7 182 288-473 10-204 (369)
247 COG2706 3-carboxymuconate cycl 99.4 3.2E-09 6.9E-14 100.0 31.9 268 270-540 37-344 (346)
248 PRK01029 tolB translocation pr 99.4 4.1E-10 9E-15 115.6 28.8 222 295-526 166-412 (428)
249 KOG4547 WD40 repeat-containing 99.4 1.5E-10 3.3E-15 114.9 24.2 206 281-488 2-240 (541)
250 KOG4497 Uncharacterized conser 99.4 3.2E-10 6.9E-15 104.6 23.4 237 265-511 84-426 (447)
251 KOG1409 Uncharacterized conser 99.3 7.3E-11 1.6E-15 109.5 16.9 272 262-546 14-294 (404)
252 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 102.5 33.4 201 271-471 85-322 (345)
253 KOG0974 WD-repeat protein WDR6 99.3 6.5E-11 1.4E-15 124.4 17.5 196 318-520 88-291 (967)
254 KOG2321 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 113.5 19.4 209 315-526 49-311 (703)
255 KOG1064 RAVE (regulator of V-A 99.3 1.8E-11 4E-16 134.2 13.1 199 267-481 2203-2407(2439)
256 KOG0280 Uncharacterized conser 99.3 3.9E-10 8.4E-15 102.7 18.6 246 272-520 69-336 (339)
257 KOG2041 WD40 repeat protein [G 99.3 9.6E-11 2.1E-15 117.9 15.3 231 272-508 14-279 (1189)
258 COG4946 Uncharacterized protei 99.3 6.6E-09 1.4E-13 100.4 27.1 146 270-420 357-507 (668)
259 KOG4547 WD40 repeat-containing 99.3 7.6E-10 1.6E-14 110.0 21.4 189 327-518 3-221 (541)
260 PLN02919 haloacid dehalogenase 99.3 7.9E-09 1.7E-13 116.8 32.5 238 276-521 571-892 (1057)
261 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.8E-08 1E-12 95.7 32.8 250 262-525 37-338 (352)
262 COG4946 Uncharacterized protei 99.2 4.7E-09 1E-13 101.5 24.9 217 281-507 275-508 (668)
263 PRK04043 tolB translocation pr 99.2 5.6E-09 1.2E-13 106.6 27.2 191 274-472 189-401 (419)
264 KOG2659 LisH motif-containing 99.2 5.4E-11 1.2E-15 106.0 10.5 167 61-227 24-198 (228)
265 KOG2315 Predicted translation 99.2 2.2E-09 4.8E-14 106.0 22.4 196 271-472 164-391 (566)
266 COG5354 Uncharacterized protei 99.2 4.3E-09 9.3E-14 102.8 23.0 251 262-522 118-400 (561)
267 KOG2314 Translation initiation 99.2 2.1E-09 4.5E-14 105.8 20.4 233 274-518 212-526 (698)
268 PRK04043 tolB translocation pr 99.2 3.9E-08 8.5E-13 100.4 30.2 193 319-521 189-404 (419)
269 COG5170 CDC55 Serine/threonine 99.2 1.1E-09 2.3E-14 100.5 15.9 243 271-516 25-366 (460)
270 KOG1064 RAVE (regulator of V-A 99.2 2.2E-10 4.8E-15 126.0 13.2 214 288-523 2184-2404(2439)
271 KOG1409 Uncharacterized conser 99.1 8.3E-09 1.8E-13 96.1 20.0 233 232-472 33-271 (404)
272 COG2706 3-carboxymuconate cycl 99.1 7E-08 1.5E-12 91.1 26.0 198 275-472 91-322 (346)
273 KOG0309 Conserved WD40 repeat- 99.1 4.6E-10 1E-14 113.6 11.8 244 275-520 70-342 (1081)
274 KOG4190 Uncharacterized conser 99.1 2.5E-10 5.3E-15 111.9 9.6 244 263-515 726-986 (1034)
275 KOG4532 WD40-like repeat conta 99.1 3.4E-08 7.4E-13 89.0 22.2 236 277-519 72-333 (344)
276 KOG1912 WD40 repeat protein [G 99.1 7.2E-09 1.6E-13 105.8 20.0 239 273-518 16-305 (1062)
277 KOG2314 Translation initiation 99.1 1.8E-08 3.9E-13 99.4 21.7 240 274-521 251-577 (698)
278 PF08450 SGL: SMP-30/Gluconola 99.1 5.2E-07 1.1E-11 86.0 31.7 216 277-506 4-244 (246)
279 PLN02919 haloacid dehalogenase 99.1 5.7E-08 1.2E-12 109.9 28.3 195 274-473 625-890 (1057)
280 KOG4190 Uncharacterized conser 99.1 2.2E-10 4.7E-15 112.3 7.4 209 309-524 727-955 (1034)
281 KOG2041 WD40 repeat protein [G 99.1 7.2E-09 1.6E-13 104.8 18.3 221 264-489 63-313 (1189)
282 TIGR03300 assembly_YfgL outer 99.1 1.5E-07 3.3E-12 95.8 28.6 232 283-529 104-350 (377)
283 KOG0280 Uncharacterized conser 99.1 4.1E-09 8.8E-14 96.1 14.8 197 275-472 124-334 (339)
284 KOG1354 Serine/threonine prote 99.1 1.8E-08 3.9E-13 93.8 18.6 232 238-473 40-361 (433)
285 PF15492 Nbas_N: Neuroblastoma 99.0 1.5E-07 3.3E-12 86.3 23.9 207 277-486 2-273 (282)
286 PF04762 IKI3: IKI3 family; I 99.0 1E-07 2.2E-12 105.9 26.2 238 270-516 73-378 (928)
287 KOG2695 WD40 repeat protein [G 99.0 1.1E-09 2.3E-14 101.9 8.9 159 364-527 216-386 (425)
288 PF04762 IKI3: IKI3 family; I 99.0 1.6E-07 3.5E-12 104.4 27.5 246 270-519 118-458 (928)
289 KOG0882 Cyclophilin-related pe 99.0 8.2E-09 1.8E-13 99.3 14.0 249 271-525 8-313 (558)
290 COG5354 Uncharacterized protei 99.0 3E-07 6.5E-12 90.2 23.5 240 272-523 71-354 (561)
291 KOG1912 WD40 repeat protein [G 99.0 3.3E-08 7.1E-13 101.1 17.5 259 259-521 42-368 (1062)
292 KOG4532 WD40-like repeat conta 99.0 2.1E-07 4.5E-12 84.1 20.6 223 292-525 50-290 (344)
293 PF13360 PQQ_2: PQQ-like domai 98.9 1E-06 2.2E-11 83.4 24.6 216 293-522 2-235 (238)
294 KOG3914 WD repeat protein WDR4 98.9 3.7E-08 8.1E-13 93.8 13.3 158 274-434 64-226 (390)
295 KOG1832 HIV-1 Vpr-binding prot 98.8 2.7E-09 5.9E-14 110.2 4.9 218 263-504 1092-1318(1516)
296 PF07433 DUF1513: Protein of u 98.8 6.4E-06 1.4E-10 78.2 26.8 206 275-484 7-259 (305)
297 KOG4714 Nucleoporin [Nuclear s 98.8 8.1E-08 1.8E-12 86.3 13.1 197 275-472 39-255 (319)
298 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.2E-05 2.5E-10 79.2 29.2 221 294-526 27-296 (352)
299 TIGR03300 assembly_YfgL outer 98.8 3.6E-06 7.9E-11 85.7 26.1 226 283-525 64-305 (377)
300 KOG3914 WD repeat protein WDR4 98.8 7.8E-08 1.7E-12 91.7 12.4 158 320-481 65-232 (390)
301 PF08450 SGL: SMP-30/Gluconola 98.8 1.8E-05 3.8E-10 75.4 28.2 199 322-528 4-223 (246)
302 PF15492 Nbas_N: Neuroblastoma 98.7 6.2E-06 1.3E-10 75.9 22.5 197 323-524 3-266 (282)
303 KOG0309 Conserved WD40 repeat- 98.7 9.4E-08 2E-12 97.3 10.7 200 317-519 24-234 (1081)
304 KOG1920 IkappaB kinase complex 98.7 5.4E-06 1.2E-10 89.7 24.2 198 271-473 67-324 (1265)
305 KOG2066 Vacuolar assembly/sort 98.7 7.5E-07 1.6E-11 92.1 16.6 180 272-471 39-233 (846)
306 PF00400 WD40: WD domain, G-be 98.7 7.6E-08 1.7E-12 62.5 6.1 38 263-300 2-39 (39)
307 KOG1645 RING-finger-containing 98.6 2.2E-05 4.9E-10 75.2 23.7 243 264-517 185-461 (463)
308 KOG2114 Vacuolar assembly/sort 98.6 5.7E-06 1.2E-10 86.3 21.3 202 279-486 30-258 (933)
309 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.5E-11 91.8 16.0 179 283-469 146-340 (1118)
310 PF13360 PQQ_2: PQQ-like domai 98.6 2.5E-05 5.4E-10 73.9 23.1 189 282-478 34-236 (238)
311 KOG2066 Vacuolar assembly/sort 98.6 1.7E-06 3.7E-11 89.5 15.5 181 318-517 40-233 (846)
312 KOG2695 WD40 repeat protein [G 98.6 2.2E-07 4.9E-12 86.7 8.2 157 323-483 217-387 (425)
313 PF07433 DUF1513: Protein of u 98.5 3.4E-05 7.4E-10 73.3 22.8 183 278-465 56-279 (305)
314 COG5170 CDC55 Serine/threonine 98.5 8.9E-07 1.9E-11 81.6 11.4 200 317-519 26-311 (460)
315 PRK11138 outer membrane biogen 98.5 3.2E-05 7E-10 79.2 24.0 229 283-526 119-362 (394)
316 KOG4714 Nucleoporin [Nuclear s 98.5 5.3E-07 1.2E-11 81.2 9.0 195 320-518 39-255 (319)
317 PF08513 LisH: LisH; InterPro 98.5 1.8E-07 4E-12 54.2 3.7 27 64-90 1-27 (27)
318 PF00400 WD40: WD domain, G-be 98.5 5.9E-07 1.3E-11 58.2 6.4 38 308-345 2-39 (39)
319 KOG1645 RING-finger-containing 98.4 1.1E-05 2.4E-10 77.2 16.2 214 309-526 185-428 (463)
320 KOG1920 IkappaB kinase complex 98.4 4.9E-05 1.1E-09 82.5 22.6 199 316-519 67-324 (1265)
321 PF11768 DUF3312: Protein of u 98.4 0.0005 1.1E-08 69.8 28.2 113 361-473 207-331 (545)
322 COG0823 TolB Periplasmic compo 98.4 1.6E-05 3.5E-10 80.8 18.0 194 263-462 183-390 (425)
323 KOG2114 Vacuolar assembly/sort 98.4 5.3E-05 1.2E-09 79.4 21.7 193 324-522 30-248 (933)
324 KOG1275 PAB-dependent poly(A) 98.4 7.9E-06 1.7E-10 85.7 15.3 183 328-515 146-340 (1118)
325 KOG0882 Cyclophilin-related pe 98.4 1.8E-06 4E-11 83.5 9.9 210 315-526 7-240 (558)
326 PRK11138 outer membrane biogen 98.4 0.0001 2.2E-09 75.5 23.3 219 284-516 160-393 (394)
327 KOG1008 Uncharacterized conser 98.3 1.3E-07 2.7E-12 95.2 1.2 197 273-472 57-276 (783)
328 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00087 1.9E-08 61.0 24.9 84 283-369 62-145 (354)
329 PRK02888 nitrous-oxide reducta 98.3 8.7E-05 1.9E-09 77.0 20.8 217 279-506 199-450 (635)
330 PF06433 Me-amine-dh_H: Methyl 98.3 0.0011 2.4E-08 64.0 26.6 243 277-528 40-331 (342)
331 PRK02888 nitrous-oxide reducta 98.3 0.00021 4.6E-09 74.3 22.6 186 328-518 140-405 (635)
332 KOG0396 Uncharacterized conser 98.3 1.2E-05 2.6E-10 76.3 12.3 122 62-183 114-241 (389)
333 PF04053 Coatomer_WDAD: Coatom 98.3 0.00033 7.1E-09 71.7 23.7 226 267-520 27-265 (443)
334 COG0823 TolB Periplasmic compo 98.2 8.3E-05 1.8E-09 75.7 18.5 189 312-507 187-389 (425)
335 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00026 5.7E-09 71.2 22.0 239 281-526 1-325 (353)
336 KOG3617 WD40 and TPR repeat-co 98.2 2.7E-05 5.8E-10 81.1 14.2 109 276-389 19-131 (1416)
337 COG3391 Uncharacterized conser 98.2 0.0041 9E-08 63.1 29.7 244 274-526 32-292 (381)
338 PF11768 DUF3312: Protein of u 98.2 1.9E-05 4.2E-10 79.8 12.4 116 274-392 207-332 (545)
339 smart00667 LisH Lissencephaly 98.2 2.6E-06 5.7E-11 53.2 4.0 32 62-93 2-33 (34)
340 KOG3617 WD40 and TPR repeat-co 98.2 5.5E-05 1.2E-09 78.9 15.5 186 275-463 62-377 (1416)
341 PF10607 CLTH: CTLH/CRA C-term 98.2 3.5E-06 7.6E-11 73.0 6.1 133 98-231 4-139 (145)
342 PF02897 Peptidase_S9_N: Proly 98.1 0.0042 9E-08 64.2 29.0 239 274-523 125-410 (414)
343 PF08596 Lgl_C: Lethal giant l 98.1 0.002 4.4E-08 65.1 25.3 231 274-507 3-326 (395)
344 KOG3621 WD40 repeat-containing 98.1 0.00018 3.9E-09 74.0 17.5 118 271-390 32-155 (726)
345 COG3386 Gluconolactonase [Carb 98.1 0.0017 3.8E-08 63.1 23.3 218 279-508 31-276 (307)
346 COG3391 Uncharacterized conser 98.1 0.0023 4.9E-08 65.0 25.2 205 274-484 75-295 (381)
347 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0066 1.4E-07 62.1 28.3 195 278-483 34-257 (410)
348 KOG1008 Uncharacterized conser 98.1 1.6E-06 3.5E-11 87.5 1.9 197 318-517 57-275 (783)
349 smart00668 CTLH C-terminal to 98.0 3.8E-06 8.3E-11 59.8 2.8 54 97-150 3-56 (58)
350 PF08553 VID27: VID27 cytoplas 98.0 0.00071 1.5E-08 73.0 20.4 132 337-470 502-646 (794)
351 cd00216 PQQ_DH Dehydrogenases 98.0 0.0037 8.1E-08 65.8 25.6 232 285-526 111-433 (488)
352 PF00780 CNH: CNH domain; Int 98.0 0.011 2.4E-07 57.2 27.2 225 282-529 5-267 (275)
353 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0004 8.7E-09 69.9 17.3 194 326-522 1-273 (353)
354 KOG3621 WD40 repeat-containing 97.9 0.00014 3.1E-09 74.8 13.3 154 316-472 32-198 (726)
355 PF06977 SdiA-regulated: SdiA- 97.9 0.0034 7.4E-08 58.9 21.5 199 266-468 15-247 (248)
356 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.014 3.1E-07 53.3 23.5 226 285-520 24-260 (354)
357 PF14583 Pectate_lyase22: Olig 97.8 0.0027 5.9E-08 62.5 18.8 198 323-521 41-276 (386)
358 PF06977 SdiA-regulated: SdiA- 97.8 0.031 6.7E-07 52.5 25.1 199 311-514 15-247 (248)
359 PF14583 Pectate_lyase22: Olig 97.8 0.029 6.2E-07 55.4 25.5 234 279-523 42-334 (386)
360 PF04053 Coatomer_WDAD: Coatom 97.7 0.0041 9E-08 63.7 20.3 144 313-471 28-173 (443)
361 PF08596 Lgl_C: Lethal giant l 97.7 0.019 4E-07 58.2 24.3 201 319-523 3-296 (395)
362 PF06433 Me-amine-dh_H: Methyl 97.7 0.027 5.9E-07 54.6 24.0 202 277-485 99-333 (342)
363 PF08553 VID27: VID27 cytoplas 97.7 0.0049 1.1E-07 66.8 20.7 141 285-430 494-646 (794)
364 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.035 7.5E-07 56.1 25.1 83 442-526 308-407 (415)
365 PF03178 CPSF_A: CPSF A subuni 97.7 0.0074 1.6E-07 59.9 20.6 174 339-518 2-203 (321)
366 PF03178 CPSF_A: CPSF A subuni 97.6 0.021 4.5E-07 56.7 23.1 179 284-468 42-262 (321)
367 PHA02713 hypothetical protein; 97.6 0.0035 7.6E-08 66.9 18.5 226 295-530 273-546 (557)
368 KOG2395 Protein involved in va 97.6 0.0013 2.8E-08 65.8 13.6 141 328-471 344-500 (644)
369 PRK13616 lipoprotein LpqB; Pro 97.6 0.008 1.7E-07 64.1 20.4 184 273-467 350-564 (591)
370 KOG4640 Anaphase-promoting com 97.6 0.0004 8.7E-09 70.7 9.7 94 271-368 19-114 (665)
371 PF04841 Vps16_N: Vps16, N-ter 97.5 0.049 1.1E-06 55.8 24.4 186 261-453 69-271 (410)
372 PF02897 Peptidase_S9_N: Proly 97.5 0.13 2.8E-06 53.1 28.0 200 320-523 126-364 (414)
373 smart00320 WD40 WD40 repeats. 97.5 0.00028 6.1E-09 44.2 5.1 38 263-300 3-40 (40)
374 PRK13616 lipoprotein LpqB; Pro 97.5 0.014 3.1E-07 62.3 20.5 146 318-471 350-525 (591)
375 KOG4441 Proteins containing BT 97.4 0.017 3.6E-07 61.7 20.4 232 282-526 283-555 (571)
376 KOG4640 Anaphase-promoting com 97.4 0.0007 1.5E-08 69.0 9.4 94 317-411 20-115 (665)
377 PRK10115 protease 2; Provision 97.4 0.31 6.7E-06 53.6 30.8 239 274-521 128-398 (686)
378 cd00216 PQQ_DH Dehydrogenases 97.4 0.015 3.3E-07 61.2 19.7 192 329-524 61-326 (488)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.17 3.6E-06 53.7 26.7 236 284-527 120-500 (527)
380 PHA03098 kelch-like protein; P 97.4 0.08 1.7E-06 56.7 24.9 185 282-473 293-513 (534)
381 PF05694 SBP56: 56kDa selenium 97.2 0.25 5.4E-06 49.5 24.2 211 263-473 53-344 (461)
382 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.035 7.6E-07 44.4 15.0 100 362-466 2-109 (111)
383 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.035 7.5E-07 44.4 14.8 100 320-426 2-109 (111)
384 COG3204 Uncharacterized protei 97.2 0.11 2.4E-06 48.8 20.1 167 313-481 81-271 (316)
385 COG3490 Uncharacterized protei 97.2 0.033 7.2E-07 51.8 16.5 188 279-470 120-347 (366)
386 COG3386 Gluconolactonase [Carb 97.2 0.096 2.1E-06 51.1 20.9 183 275-460 68-274 (307)
387 smart00320 WD40 WD40 repeats. 97.2 0.0013 2.9E-08 41.0 5.5 37 309-345 4-40 (40)
388 COG3490 Uncharacterized protei 97.1 0.091 2E-06 49.0 18.7 230 277-515 72-346 (366)
389 KOG4499 Ca2+-binding protein R 97.1 0.12 2.5E-06 46.9 18.8 214 285-506 28-273 (310)
390 PF14870 PSII_BNR: Photosynthe 97.1 0.3 6.5E-06 47.4 27.0 230 274-514 63-301 (302)
391 PHA02713 hypothetical protein; 97.0 0.019 4E-07 61.4 15.9 184 283-473 303-535 (557)
392 KOG2817 Predicted E3 ubiquitin 97.0 0.005 1.1E-07 59.8 9.6 106 63-168 116-230 (394)
393 KOG1897 Damage-specific DNA bi 97.0 0.49 1.1E-05 51.6 24.9 243 274-527 585-866 (1096)
394 KOG2079 Vacuolar assembly/sort 96.9 0.0029 6.2E-08 68.5 8.5 102 283-388 98-202 (1206)
395 PF07995 GSDH: Glucose / Sorbo 96.9 0.5 1.1E-05 47.0 25.3 233 274-512 3-330 (331)
396 KOG2079 Vacuolar assembly/sort 96.8 0.0053 1.2E-07 66.6 8.8 101 412-516 98-202 (1206)
397 PHA03098 kelch-like protein; P 96.7 0.093 2E-06 56.1 18.4 187 328-521 294-515 (534)
398 KOG2444 WD40 repeat protein [G 96.7 0.0029 6.3E-08 56.8 5.2 137 374-518 33-178 (238)
399 KOG4441 Proteins containing BT 96.6 0.14 3.1E-06 54.7 18.5 190 329-524 285-506 (571)
400 KOG2395 Protein involved in va 96.6 0.048 1E-06 55.0 13.3 143 283-431 344-500 (644)
401 COG3204 Uncharacterized protei 96.5 0.76 1.7E-05 43.4 19.8 164 268-433 81-265 (316)
402 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 0.56 1.2E-05 49.8 21.2 189 329-522 69-338 (527)
403 PF00780 CNH: CNH domain; Int 96.4 1.1 2.3E-05 43.3 26.6 198 275-484 38-267 (275)
404 PF15390 DUF4613: Domain of un 96.3 0.37 8E-06 49.7 17.8 178 269-459 16-219 (671)
405 PF15390 DUF4613: Domain of un 96.3 0.34 7.4E-06 50.0 17.3 147 317-471 19-186 (671)
406 TIGR02604 Piru_Ver_Nterm putat 96.2 0.15 3.3E-06 51.5 15.1 145 273-420 14-202 (367)
407 TIGR03074 PQQ_membr_DH membran 96.2 1.3 2.7E-05 49.1 22.9 194 329-524 194-484 (764)
408 PHA02790 Kelch-like protein; P 96.2 0.39 8.4E-06 50.5 18.3 184 328-520 271-473 (480)
409 PF10647 Gmad1: Lipoprotein Lp 96.1 1.3 2.8E-05 42.1 21.7 146 274-423 25-187 (253)
410 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.3 2.9E-05 42.2 22.2 213 273-486 23-293 (336)
411 KOG1897 Damage-specific DNA bi 96.1 3 6.5E-05 45.9 31.6 236 272-517 353-613 (1096)
412 PRK10115 protease 2; Provision 96.0 3.1 6.8E-05 45.8 25.5 193 318-516 127-343 (686)
413 COG4257 Vgb Streptogramin lyas 95.9 1.2 2.5E-05 41.7 17.6 190 320-520 64-265 (353)
414 PF14870 PSII_BNR: Photosynthe 95.9 1.8 3.9E-05 42.1 28.1 239 272-521 16-264 (302)
415 PHA02790 Kelch-like protein; P 95.9 0.47 1E-05 49.9 17.5 182 283-473 271-472 (480)
416 PF10647 Gmad1: Lipoprotein Lp 95.9 0.87 1.9E-05 43.3 17.8 142 319-463 25-187 (253)
417 KOG2444 WD40 repeat protein [G 95.9 0.027 5.8E-07 50.8 6.8 104 284-389 70-177 (238)
418 PF14727 PHTB1_N: PTHB1 N-term 95.9 2.5 5.4E-05 43.1 28.7 147 283-431 36-204 (418)
419 PF05694 SBP56: 56kDa selenium 95.8 1.8 3.9E-05 43.6 19.8 178 280-460 137-392 (461)
420 TIGR02604 Piru_Ver_Nterm putat 95.8 0.46 9.9E-06 48.1 16.5 141 318-460 14-202 (367)
421 PF12894 Apc4_WD40: Anaphase-p 95.8 0.03 6.5E-07 37.4 5.2 31 272-302 11-41 (47)
422 PF12894 Apc4_WD40: Anaphase-p 95.7 0.035 7.7E-07 37.0 5.4 35 316-351 10-44 (47)
423 KOG2280 Vacuolar assembly/sort 95.5 0.79 1.7E-05 48.7 16.8 181 292-481 62-255 (829)
424 COG4257 Vgb Streptogramin lyas 95.5 2.2 4.7E-05 40.0 20.9 240 273-521 62-309 (353)
425 PF12234 Rav1p_C: RAVE protein 95.4 0.99 2.2E-05 48.1 17.6 113 318-432 30-157 (631)
426 COG5167 VID27 Protein involved 95.4 1.1 2.5E-05 45.4 16.5 140 328-471 478-632 (776)
427 TIGR03548 mutarot_permut cycli 95.4 3.2 7E-05 41.0 21.4 106 328-434 72-197 (323)
428 KOG3630 Nuclear pore complex, 95.3 0.27 5.9E-06 54.3 13.1 144 274-418 102-260 (1405)
429 KOG2377 Uncharacterized conser 95.0 4.2 9E-05 40.9 18.9 148 283-433 32-187 (657)
430 COG5276 Uncharacterized conser 95.0 3.4 7.4E-05 39.2 24.8 151 317-473 86-243 (370)
431 TIGR03074 PQQ_membr_DH membran 94.9 7.8 0.00017 43.0 24.4 150 329-480 260-485 (764)
432 PLN02153 epithiospecifier prot 94.9 4.6 0.0001 40.3 24.0 144 328-473 85-286 (341)
433 PLN02153 epithiospecifier prot 94.8 3.6 7.9E-05 41.0 19.1 147 370-521 85-288 (341)
434 PF06588 Muskelin_N: Muskelin 94.6 0.04 8.6E-07 48.5 3.8 36 62-97 164-199 (199)
435 PF05096 Glu_cyclase_2: Glutam 94.5 4.3 9.4E-05 38.3 24.3 155 320-480 47-211 (264)
436 KOG3630 Nuclear pore complex, 94.4 0.35 7.6E-06 53.5 11.1 141 319-459 102-261 (1405)
437 PF14781 BBS2_N: Ciliary BBSom 94.4 2.6 5.6E-05 35.1 13.6 113 407-523 4-131 (136)
438 KOG2377 Uncharacterized conser 94.2 1 2.2E-05 45.0 12.9 146 369-519 31-187 (657)
439 PLN02193 nitrile-specifier pro 94.0 5.7 0.00012 41.7 19.2 188 328-522 175-415 (470)
440 PF12234 Rav1p_C: RAVE protein 94.0 1.7 3.6E-05 46.5 14.8 111 274-388 31-155 (631)
441 PF10168 Nup88: Nuclear pore c 94.0 12 0.00026 41.2 22.3 73 318-390 85-180 (717)
442 PLN00033 photosystem II stabil 93.8 7.3 0.00016 39.7 18.8 144 320-468 241-396 (398)
443 PF14781 BBS2_N: Ciliary BBSom 93.7 2.5 5.4E-05 35.2 12.3 110 366-480 5-133 (136)
444 PRK13684 Ycf48-like protein; P 93.7 8.3 0.00018 38.4 24.8 150 359-515 172-329 (334)
445 TIGR03548 mutarot_permut cycli 93.6 6.9 0.00015 38.7 18.1 104 370-473 72-196 (323)
446 PLN02193 nitrile-specifier pro 93.5 9.5 0.0002 40.0 19.9 145 328-473 228-412 (470)
447 KOG2247 WD40 repeat-containing 93.4 0.011 2.3E-07 59.0 -2.2 136 321-458 38-176 (615)
448 KOG1916 Nuclear protein, conta 93.3 0.086 1.9E-06 56.5 4.1 164 268-434 128-326 (1283)
449 PRK14131 N-acetylneuraminic ac 93.3 10 0.00023 38.4 23.1 53 328-380 84-149 (376)
450 PF10168 Nup88: Nuclear pore c 93.2 2.4 5.1E-05 46.6 14.9 29 359-388 84-112 (717)
451 TIGR03118 PEPCTERM_chp_1 conse 92.8 9.5 0.00021 36.6 22.6 210 320-531 25-293 (336)
452 COG5167 VID27 Protein involved 92.5 3.8 8.3E-05 41.8 13.8 141 283-431 478-632 (776)
453 KOG2280 Vacuolar assembly/sort 92.4 6.9 0.00015 41.9 16.2 187 262-453 73-271 (829)
454 PF05096 Glu_cyclase_2: Glutam 92.3 10 0.00022 35.8 21.4 168 351-524 35-210 (264)
455 PF08728 CRT10: CRT10; InterP 92.0 6.5 0.00014 42.6 15.9 145 284-430 49-245 (717)
456 PRK13684 Ycf48-like protein; P 92.0 14 0.00031 36.7 24.5 237 272-521 45-291 (334)
457 PF07250 Glyoxal_oxid_N: Glyox 91.9 2.9 6.3E-05 39.2 11.8 144 383-530 48-210 (243)
458 PF08728 CRT10: CRT10; InterP 91.9 3.7 8E-05 44.4 13.9 101 370-470 113-245 (717)
459 PF07569 Hira: TUP1-like enhan 91.5 1.5 3.2E-05 40.6 9.5 64 409-473 18-97 (219)
460 PF07995 GSDH: Glucose / Sorbo 91.5 15 0.00032 36.6 17.3 100 320-421 4-133 (331)
461 KOG1916 Nuclear protein, conta 91.5 0.18 3.9E-06 54.2 3.7 159 293-486 110-284 (1283)
462 KOG4460 Nuclear pore complex, 91.4 3.8 8.3E-05 41.9 12.5 93 360-473 104-200 (741)
463 PF10313 DUF2415: Uncharacteri 91.3 0.74 1.6E-05 29.8 5.0 30 403-432 2-34 (43)
464 PF10313 DUF2415: Uncharacteri 91.3 0.99 2.2E-05 29.3 5.5 32 318-349 1-35 (43)
465 KOG1983 Tomosyn and related SN 91.2 8.2 0.00018 44.2 16.7 224 274-521 37-268 (993)
466 TIGR03547 muta_rot_YjhT mutatr 91.1 18 0.00038 36.2 21.7 53 328-380 63-128 (346)
467 TIGR03606 non_repeat_PQQ dehyd 90.8 22 0.00048 36.7 19.8 112 268-380 25-166 (454)
468 PF09398 FOP_dimer: FOP N term 90.7 0.5 1.1E-05 35.5 4.4 31 65-95 20-50 (81)
469 KOG4499 Ca2+-binding protein R 90.7 14 0.0003 34.1 18.4 132 318-451 109-263 (310)
470 COG5290 IkappaB kinase complex 90.1 12 0.00026 40.5 15.2 89 363-453 250-348 (1243)
471 PF14655 RAB3GAP2_N: Rab3 GTPa 89.8 4.6 0.0001 41.1 11.9 95 260-357 295-408 (415)
472 PF10395 Utp8: Utp8 family; I 89.7 33 0.00071 37.1 21.6 159 317-481 129-314 (670)
473 KOG2247 WD40 repeat-containing 89.6 0.044 9.5E-07 54.8 -2.5 147 274-427 36-184 (615)
474 KOG1898 Splicing factor 3b, su 89.3 42 0.00092 37.8 19.9 175 340-519 854-1050(1205)
475 COG1520 FOG: WD40-like repeat 89.3 26 0.00057 35.4 21.4 195 283-483 68-279 (370)
476 KOG1900 Nuclear pore complex, 89.2 3.5 7.6E-05 46.9 11.3 134 336-472 96-273 (1311)
477 PF13449 Phytase-like: Esteras 89.2 25 0.00053 34.9 18.4 108 271-379 18-166 (326)
478 COG5276 Uncharacterized conser 89.1 21 0.00046 34.0 25.0 226 280-517 134-369 (370)
479 PF07569 Hira: TUP1-like enhan 89.0 3.3 7.1E-05 38.4 9.5 67 367-434 18-98 (219)
480 PF11715 Nup160: Nucleoporin N 89.0 2.2 4.9E-05 45.7 9.7 75 282-356 156-257 (547)
481 PF10214 Rrn6: RNA polymerase 88.9 27 0.00058 39.2 18.2 129 259-390 129-277 (765)
482 PF13449 Phytase-like: Esteras 88.8 26 0.00057 34.7 17.2 142 317-458 19-231 (326)
483 KOG4460 Nuclear pore complex, 88.5 12 0.00025 38.6 13.2 27 319-345 105-131 (741)
484 COG5290 IkappaB kinase complex 88.4 9.9 0.00021 41.1 13.1 69 404-473 249-326 (1243)
485 COG4590 ABC-type uncharacteriz 87.9 3.3 7.2E-05 41.5 9.0 166 265-434 213-389 (733)
486 PF10214 Rrn6: RNA polymerase 87.6 53 0.0012 36.9 26.3 155 315-472 77-277 (765)
487 TIGR03606 non_repeat_PQQ dehyd 87.4 39 0.00084 35.0 19.8 105 318-422 30-166 (454)
488 PLN00033 photosystem II stabil 87.2 37 0.00081 34.6 25.6 142 363-514 242-396 (398)
489 TIGR03547 muta_rot_YjhT mutatr 87.2 34 0.00074 34.1 17.6 41 339-380 168-210 (346)
490 KOG1520 Predicted alkaloid syn 86.8 32 0.00069 34.2 14.9 49 420-468 196-247 (376)
491 PF02333 Phytase: Phytase; In 86.8 37 0.0008 34.2 24.7 187 328-518 67-291 (381)
492 COG3877 Uncharacterized protei 86.7 3.6 7.7E-05 32.1 6.7 78 61-158 42-121 (122)
493 PF12768 Rax2: Cortical protei 86.7 22 0.00048 34.2 13.8 90 381-470 16-122 (281)
494 PF12768 Rax2: Cortical protei 86.6 14 0.0003 35.6 12.3 111 339-449 16-144 (281)
495 PF03088 Str_synth: Strictosid 86.3 5.6 0.00012 30.7 7.7 41 420-460 34-75 (89)
496 KOG1900 Nuclear pore complex, 86.2 8.2 0.00018 44.1 11.8 166 258-432 65-273 (1311)
497 PF05935 Arylsulfotrans: Aryls 85.6 40 0.00086 35.4 16.4 153 328-485 114-314 (477)
498 PRK14131 N-acetylneuraminic ac 85.1 46 0.001 33.7 17.5 39 340-379 190-230 (376)
499 PF14761 HPS3_N: Hermansky-Pud 85.0 30 0.00066 31.5 13.5 142 366-513 22-211 (215)
500 COG4590 ABC-type uncharacteriz 84.8 1.1 2.4E-05 44.8 4.0 168 311-481 214-395 (733)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-79 Score=569.72 Aligned_cols=481 Identities=47% Similarity=0.794 Sum_probs=450.6
Q ss_pred CCCcccccccccccchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHHHhhcCCCCChh
Q 008717 48 SQGDEEKIGSKGVIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDET 127 (556)
Q Consensus 48 ~~~~~~~~~~~~~i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~ 127 (556)
++|..+.+|+||.|.+.|++|+++|+|+++||.+|+.+||.|+|+-+.+..+..|.+++++|+|+.++..+..+.++++.
T Consensus 2 ~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~ 81 (519)
T KOG0293|consen 2 QNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDER 81 (519)
T ss_pred CCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchh
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccChhhHHHhhhccccCCcccccCCCCCCchhHHHHHHHHHHH
Q 008717 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKL 207 (556)
Q Consensus 128 ~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 207 (556)
..+.++|++.+|+|+|++..+.+..|+..||+...++..+.+++++|++.+..++.....+... .......|.+++++|
T Consensus 82 ~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~el 160 (519)
T KOG0293|consen 82 NRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDEL 160 (519)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777664432222222 233456899999999
Q ss_pred HhcCCCCccCCcchHHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEE
Q 008717 208 QKLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL 287 (556)
Q Consensus 208 ~~~~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l 287 (556)
++.+||.+++|+.||++|++||+.+|++.|+||++.+. ++++.|+.|.+..+|.+..+++..|+++||.+.||++|+||
T Consensus 161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyL 239 (519)
T KOG0293|consen 161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYL 239 (519)
T ss_pred HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeE
Confidence 99999999999999999999999999999999998874 99999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCceEEEE
Q 008717 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCG 366 (556)
Q Consensus 288 as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~ 366 (556)
|+++.|.+..||++.....++..+++.+|..+|..+.||||+++|++|+.|..+.+||+.+|.+...+... ...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 99999999999999988888899999999999999999999999999999999999999999998888644 67899999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceE
Q 008717 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVIT 445 (556)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~ 445 (556)
|.|||..+++|+.|++|..||++++....|.+.....|.++++++||+++++.+.|..|++|+..+.. ...+....+|+
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred EccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 99999999999999999999999999999998887789999999999999999999999999999888 55788899999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 446 ~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
++++|.|++++++.-.+..|++||++.. +.+.+|.||....+.|+.||+..+..+|++||+|+.||||+..++++++.+
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 9999999999999999999999999977 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 008717 526 SSLDNF 531 (556)
Q Consensus 526 ~~~~~~ 531 (556)
.+|...
T Consensus 479 sGHs~~ 484 (519)
T KOG0293|consen 479 SGHSKT 484 (519)
T ss_pred cCCcce
Confidence 988843
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-58 Score=416.93 Aligned_cols=459 Identities=20% Similarity=0.305 Sum_probs=385.6
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH-HHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 008717 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS-VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQ 139 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~-~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q 139 (556)
|.+.+|+|||.|||+|+.+..+.++||+|+++++|+. .++.|.+.|.+|+||.++..+++|++|+..+.. +|+|
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~d-----LYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLID-----LYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHH-----HHHH
Confidence 4567999999999999999999999999999999996 699999999999999999999999999977766 9999
Q ss_pred HHHHHHhcCChHHHHHHHhhccccccc----ChhhHHHhhhccccCCcccccCCCCCCchhHHHHHHHHHHHHhcCCCCc
Q 008717 140 KFLELLRRDKVSAALNSLRSEIVPLQI----NMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKLQKLLPASV 215 (556)
Q Consensus 140 ~~~ell~~~~~~~a~~~L~~~l~pl~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~ 215 (556)
..+||+|.++...|..+||+. .|+.. +++|+.+|.+++..+..+ +.+.+.. ..+++.|..+.+.+..++ -
T Consensus 80 ivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE~ll~R~YFD-p~EaY~d-ssKEkrRa~IAQ~ls~EV---~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLENLLNRSYFD-PREAYGD-SSKEKRRAVIAQALSGEV---H 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHHHHhcccccC-hhhhcCc-chHHHHHHHHHHHhcCce---E
Confidence 999999999999999999975 67653 789999999999887654 2333322 456777888888887665 6
Q ss_pred cCCcchHHHHHHHHHhhccccceeecCCCCceeeecCCCC----CCCCCCcceeEEec-ccCCcEEEEEEccCCCEEEEE
Q 008717 216 VIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQC----GRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASS 290 (556)
Q Consensus 216 ~~p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~l~-~h~~~V~~~~~sp~g~~las~ 290 (556)
.+||.||..|+.|+++||....++.++. .+.++..... .....|....+.++ +.++.+.|..|||||+||++|
T Consensus 154 VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsg 231 (508)
T KOG0275|consen 154 VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSG 231 (508)
T ss_pred EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeec
Confidence 7899999999999999999988876543 4555554332 23456777777665 677889999999999999999
Q ss_pred eCCCcEEEEEeecCCe-----eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCceEE
Q 008717 291 SKDQSAIIWEVKEDGQ-----VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS 364 (556)
Q Consensus 291 s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~ 364 (556)
+.||.|.+||..++.- +.....+.-++.+|.|+.||.|...+++|+.||.|++|.+.+|.|++.|. .|...|+|
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~ 311 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTC 311 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeE
Confidence 9999999999986531 22334566789999999999999999999999999999999999999998 88999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----eeeeec
Q 008717 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEE 440 (556)
Q Consensus 365 i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~ 440 (556)
+.|+.|+..+++++.|.++++.-+++++......+|.+.|+...|++||..+++++.||+|++|+.++.. ....+.
T Consensus 312 l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 312 LSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 9999999999999999999999998776665566666699999999999999999999999999999887 233345
Q ss_pred CCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 441 EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 441 ~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+.+|+++-.-|. -..++++...++|+|.++.. +.++.+.... ...-.+.++. +|.|.++++.++|+.+|.+.+.+
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~l-SpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAIL-SPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEe-cCCCcEEEEEccCcEEEEEEeec
Confidence 678888888884 47888999999999999875 6888885432 2223355555 99999999999999999999999
Q ss_pred CceeeeecCCCcccccc
Q 008717 519 ESVAAAASSLDNFVSSY 535 (556)
Q Consensus 519 ~~~~~~~~~~~~~v~~~ 535 (556)
|++.....-+...+...
T Consensus 469 G~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 469 GKLERTLPVHEKDVIGL 485 (508)
T ss_pred Cceeeeeeccccccccc
Confidence 99988877777655543
No 3
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-44 Score=340.61 Aligned_cols=248 Identities=18% Similarity=0.320 Sum_probs=223.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
..|++++|+.+|..||+|+.||.++||+... ....++..|.++|.++.|+.+|+||++++.|+++.+||..+|+..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 5799999999999999999999999999873 356788999999999999999999999999999999999999999
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q 008717 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (556)
Q Consensus 353 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~ 431 (556)
+.+..|..+-..+.|- +...|++++.|+.|+++.+... ...++.+ |.+.|.++.|+|.|..|++++.|++++||...
T Consensus 312 q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 9999998887889997 5568999999999999999754 4555555 56699999999999999999999999999987
Q ss_pred CCe--eeeeecCCceEEEEEcCCC---------CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 432 ANF--ERWIEEEEVITSFSLSKDN---------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 432 ~~~--~~~~~~~~~i~~v~~sp~~---------~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
... ..+..|...|..+.|+|+| ..+++++.|++|++||+..+ .++.+|..|..+|+. +.| +|+|+
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVys--vaf-S~~g~ 465 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYS--VAF-SPNGR 465 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEE--EEe-cCCCc
Confidence 766 7788999999999999964 47899999999999999999 999999999999887 667 99999
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeecCCCc
Q 008717 501 FIASGSEDSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
++|+|+.||.|.||+.+++++.....+..+
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeecCCCe
Confidence 999999999999999999999877665554
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-43 Score=321.92 Aligned_cols=287 Identities=21% Similarity=0.383 Sum_probs=246.7
Q ss_pred eecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
|.++....++...|.+...|+.. ..++.+.++|.+.|.|++|+|||+.||+|+.||+|++||..++++ .-..+.+|.
T Consensus 123 fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH~ 200 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGHK 200 (480)
T ss_pred ecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--ccccccCcc
Confidence 44433333344444444444433 467889999999999999999999999999999999999998763 457889999
Q ss_pred CCeEEEEeCC-----CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 008717 318 KPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (556)
Q Consensus 318 ~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~ 392 (556)
..|++++|.| ..++|++++.||+|+|||+..+.++..+.+|..+|+|+.|--+ .++++|+.|++|++|+...+.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchh
Confidence 9999999987 5679999999999999999999999999999999999999744 589999999999999998777
Q ss_pred EEEeecccCCCeeEEEEc-----------cC-------------------------CCEEEEEeCCCeEEEEECCCCe--
Q 008717 393 LESWKGQKTLRISDMAIT-----------DD-------------------------GKRIISICREAAILLLDREANF-- 434 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s-----------~~-------------------------g~~l~~~~~d~~I~i~d~~~~~-- 434 (556)
+......|...|+.++.+ |. +..+++|+.|.++.+|+....+
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 666666677799999877 22 3459999999999999987655
Q ss_pred -eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEE
Q 008717 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVP 513 (556)
Q Consensus 435 -~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~i 513 (556)
.+..+|...|+.+.||||++++|+++.|..|++||.+++ +.+.+|+||...+|. +.| +.|.++|++||.|.++++
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYq--vaw-saDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQ--VAW-SADSRLLVSGSKDSTLKV 435 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEE--EEe-ccCccEEEEcCCCceEEE
Confidence 678899999999999999999999999999999999999 999999999999888 555 889999999999999999
Q ss_pred EEcCCCceeeeecCCCccc
Q 008717 514 EILLSESVAAAASSLDNFV 532 (556)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v 532 (556)
|+++++++...+.+|...|
T Consensus 436 w~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred EEeeeeeecccCCCCCceE
Confidence 9999999988888777644
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-41 Score=311.72 Aligned_cols=267 Identities=19% Similarity=0.261 Sum_probs=237.9
Q ss_pred CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
..-.++...+.||.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+|||+.||+|+.|
T Consensus 102 rpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 102 RPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred cccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccC
Confidence 3346777889999999999999999999999999999999999976 5678899999999999999999999999999
Q ss_pred CcEEEEECCCCcEE-EEEecCCCceEEEEEec-----CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 339 EAIRRWDVNSGECL-HVYEKTGVGLISCGWFL-----DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 339 g~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
|+|++||.++|+++ ..+.+|...|++++|.| ..+++++++.||.|+|||+..+........|..+|+|+.|--+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 99999999998764 67899999999999986 5779999999999999999987777777777779999999765
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEc-----------CCCC-------------------------
Q 008717 413 GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS-----------KDNK------------------------- 454 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~s-----------p~~~------------------------- 454 (556)
| ++++++.|++|++|+...+. ..+.+|...|+.++++ |.++
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4 89999999999999999987 7888999999999876 3343
Q ss_pred EEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 455 ~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
.|++|+.|.++.+|+-....+++.++.+|..-+.. +.| |||+++||++|.|..|++|+-.+|+.++...+|-+.|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~--V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH--VSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheee--EEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 49999999999999987665799999999998554 667 9999999999999999999999999998888777654
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-42 Score=320.70 Aligned_cols=275 Identities=19% Similarity=0.227 Sum_probs=251.1
Q ss_pred cccceeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccC--CCEEEEEeCCCcEEEEEeecCCeeEEE
Q 008717 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLK 310 (556)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~--g~~las~s~dg~i~iwd~~~~~~~~~~ 310 (556)
...|.|+......++...++.+..|..| ...+++|.||.+.|.++.|+|. +..+|||+.||++++|++.+. .++
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l 254 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPL 254 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cch
Confidence 4457777777777777777888777776 4678899999999999999996 668999999999999999865 677
Q ss_pred EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 008717 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~ 390 (556)
..+.+|...|..++|+|+|++|+|++.|.+-++||+.++..+...++|...|.+++|.|||..+++|+.|..-+|||+++
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt 334 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT 334 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEE
Q 008717 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHL 467 (556)
Q Consensus 391 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~l 467 (556)
+...-+...|..+|.+|+|+|+|..+++|+.|++++|||++... ..+.+|..-|+.|.|+| .|.+|++++.|++++|
T Consensus 335 gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 335 GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceee
Confidence 77777777788899999999999999999999999999999887 67778999999999999 7899999999999999
Q ss_pred EEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
|..++. .+++.+.||.+.|.+ +.. ++|+.+|++++.|.++++|.
T Consensus 415 Ws~~~~-~~~ksLaGHe~kV~s--~Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRTW-SPLKSLAGHEGKVIS--LDI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCCc-ccchhhcCCccceEE--EEe-ccCCceEEEeccCceeeecc
Confidence 999998 999999999999766 444 88999999999999999995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-41 Score=315.77 Aligned_cols=258 Identities=17% Similarity=0.160 Sum_probs=240.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeCCCcEEEEECC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~ 347 (556)
|-..+|..+.||+|++.|||||.+|.++||+..+. ..+.++.+|...|.++.|+|. +..++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56678999999999999999999999999999865 677899999999999999996 6799999999999999999
Q ss_pred CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
+...+..+.+|...|..++|+|+|++|.+++.|.+-++||++++.......+|...|.+++|.+||..+++|+.|..-+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999999998877777788889999999999999999999999999
Q ss_pred EECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC-CCcEEEE
Q 008717 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIAS 504 (556)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s 504 (556)
||++++. ..+.+|..+|.+|+|+|+|..||+|+.|++++|||++.. ..+.++.+|.+-|.. ++| +| .|.+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~--Vk~-~p~~g~fL~T 405 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQ--VKY-SPQEGYFLVT 405 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhh--eEe-cccCCeEEEE
Confidence 9999998 677789999999999999999999999999999999988 789999999998665 677 76 8999999
Q ss_pred eeCCCcEEEEEcCCCceeeeecCCCccccc
Q 008717 505 GSEDSQNVPEILLSESVAAAASSLDNFVSS 534 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 534 (556)
+|.|++++||.-.+..+...+.+|++-|.+
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEE
Confidence 999999999999999999999999987754
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-37 Score=273.32 Aligned_cols=271 Identities=17% Similarity=0.267 Sum_probs=233.5
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
+++.+.|..+.+|..+.- +..-+.+++.++||...|..++.++||++.++++.|+++++||+.++ +..+.|.+|.
T Consensus 31 l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH~ 105 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGHT 105 (315)
T ss_pred EEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEecC
Confidence 345556666666665443 34446789999999999999999999999999999999999999977 5678899999
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--CCceEEEEEecC--CCeEEEEeCCCcEEEEECCCCeE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
..|.+++|++|.+.|++|+.|.+|++|++.. .+..++..+ ...|.|+.|+|+ ...|++++.|++|++||+++.++
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 9999999999999999999999999999865 444454433 788999999997 78899999999999999999999
Q ss_pred EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
......|.+.++.++++|||..+++|+.||.+.+||+..++ ....++...|.+++|+|+.-+|+.+. +..|+|||+.+
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~ 263 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES 263 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence 88888888899999999999999999999999999999998 88889999999999999987776665 56699999998
Q ss_pred CCcceeEEeCc-------cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 473 DPKLVSRYKGH-------KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 473 ~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+ .++..++.. .....++.+.| ++||..|++|-.|+.|++|.+.
T Consensus 264 ~-~~v~~l~~d~~g~s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 K-AVVEELKLDGIGPSSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred h-hhhhhccccccccccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 8 777666432 12456676777 9999999999999999999875
No 9
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-37 Score=267.18 Aligned_cols=272 Identities=23% Similarity=0.387 Sum_probs=244.0
Q ss_pred CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
..|.+..+.+..|+++|..+.|+-||+|.++++.|++|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 4577888999999999999999999999999999999999999876 6889999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--EEEeecccCCCeeEEEEccCCCEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
..|.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.+++. ..++.......|.++..+ +..|
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEE
Confidence 999999999999999999999999999999999999999999999999998643 333333333478888876 4579
Q ss_pred EEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
++|+.||+++.||++.++........+|++++|++|++..++++.|+++++.|-.++ +++..|+||.+..+-+.+|+ .
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l-~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL-N 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee-c
Confidence 999999999999999999777778899999999999999999999999999999999 99999999999999999999 7
Q ss_pred CCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcc-ccccee
Q 008717 497 FEQAFIASGSEDSQNVPEILLSESVAAAASSLDNF-VSSYFC 537 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~ 537 (556)
.....+++||+||.|++||+..+.++.....+... +.+..|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSC 278 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeec
Confidence 77889999999999999999999887776666544 344444
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-37 Score=312.72 Aligned_cols=259 Identities=20% Similarity=0.344 Sum_probs=234.7
Q ss_pred CCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----------------------------CeeE
Q 008717 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----------------------------GQVS 308 (556)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~----------------------------~~~~ 308 (556)
+...|.-++.++..-...++|..|++|+.+||.|-.|..|++|.+... ....
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 456777888888877888999999999999999999999999998721 0012
Q ss_pred EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
...++.+|.++|..+.|+|+.++|++|+.|+++++|.+.+..++..+++|..+|+.+.|+|-|-+|++++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 33558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEE
Q 008717 389 DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~ 466 (556)
.......+...|.+.|.|+.|+|+..++++|+.|.+|++||..++. ..+.+|.++|++++|||+|++|++|+.||.|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 8766666666666799999999999999999999999999999998 77789999999999999999999999999999
Q ss_pred EEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 467 lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+||+.++ +++..+.+|.+.++. +.| +.||..||+|+.|++|++||+..-
T Consensus 603 iWDl~~~-~~v~~l~~Ht~ti~S--lsF-S~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 603 IWDLANG-SLVKQLKGHTGTIYS--LSF-SRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEcCCC-cchhhhhcccCceeE--EEE-ecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999 999999999888776 555 889999999999999999998743
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-36 Score=264.62 Aligned_cols=278 Identities=16% Similarity=0.249 Sum_probs=239.6
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
.+.+.|..|.+|...+ +.+.+++....+.|+.+...|+++.||+|+. ..|++||+.+++. .++.++.+|++
T Consensus 14 vsA~YDhTIRfWqa~t-------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~k 84 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALT-------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTK 84 (311)
T ss_pred EeccCcceeeeeehhc-------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCC
Confidence 4455666667765443 7888999988889999999999999999875 5899999998654 48899999999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEee
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWK 397 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~ 397 (556)
.|+.+.|..+|+++++|+.||+++|||++...+.+.++ +..+|+++..+|+...|++|..+|.|++||+.... ...+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 99999999999999999999999999999977777776 56899999999999999999999999999998653 33344
Q ss_pred cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
......|.+++..|||++++.+...|+.++|++-+.. .++..|.+.+..+.+|||+++|++++.|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 4444589999999999999999999999999997754 45667899999999999999999999999999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
+++..+.-..+++|...++. +.| |.||.||++|+.|+.+++|++..++.+....++-
T Consensus 244 ~~~~~kle~~l~gh~rWvWd--c~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWD--CAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred cCCceeeEEEeecCCceEEe--eee-ccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 98765666778888876544 777 9999999999999999999999999877665544
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.1e-36 Score=266.66 Aligned_cols=264 Identities=16% Similarity=0.231 Sum_probs=234.6
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
+..++|+||.+.|.++.|++|+++|+++|.||.+.|||..+.++ .+.++-....|..++|+|.|+++|.|+.|+...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK---~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK---VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc---eeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44589999999999999999999999999999999999988743 455666778999999999999999999999999
Q ss_pred EEECCCC------cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc-CCCE
Q 008717 343 RWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKR 415 (556)
Q Consensus 343 iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~ 415 (556)
||++.+. ...+.+.+|.+.+.++.|.+ ...|++++.|.+..+||+++++....+..|.+.|.+++++| +++.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9999865 34567889999999999986 67899999999999999998888887888888999999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++|+-|+..++||++.+. ..+.+|...|+++.|.|+|.-+++|+.|++.++||++.. +.+..|.......-+..+.
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEE
Confidence 9999999999999999998 788899999999999999999999999999999999998 7777776433222223355
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
| |..|++|++|..|.++.+||.-.++.+-.+.+|+|-|
T Consensus 281 F-S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 281 F-SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred E-cccccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 5 9999999999999999999999999999999998754
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-36 Score=265.06 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=225.2
Q ss_pred eeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
...++++|++.|..++..+. ...+++++.|.++.+|++..... ..+.+.+.+|...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45678999999999999996 56888999999999999985432 2457889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-CCCeeEEEEccC--CCEEE
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDD--GKRII 417 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~s~~--g~~l~ 417 (556)
+++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+|++||+.+.......... ...|.|+.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999988777776664 669999999998 67899
Q ss_pred EEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
+++.|++|++||+++.+ ..+.+|.+.++.+++||||...++|+.||.+.+||++.+ +.+..+. |...+.. ++|
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~-a~~~v~s--l~f- 241 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLE-AFDIVNS--LCF- 241 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEecc-CCCeEee--EEe-
Confidence 99999999999999988 778899999999999999999999999999999999998 7766664 4455433 666
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
+|+..+|+.+. +..|+|||+.++..+...
T Consensus 242 spnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 242 SPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred cCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 99987776655 445999999998876544
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=263.19 Aligned_cols=266 Identities=19% Similarity=0.260 Sum_probs=235.0
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC---CeeEEEEEec
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRLS 314 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~---~~~~~~~~~~ 314 (556)
+.+.+.++.+-+|+..+ ...++.+.-....|..++|+|.|+++|.|+-|+...||++.+. +.....+.+.
T Consensus 70 ivSaSqDGklIvWDs~T-------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~ 142 (343)
T KOG0286|consen 70 IVSASQDGKLIVWDSFT-------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA 142 (343)
T ss_pred EEeeccCCeEEEEEccc-------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec
Confidence 34556666666665444 5566777778889999999999999999999999999999843 3346667899
Q ss_pred CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
+|++.+.|+.|-+ ..+|+|++.|.+..+||+++|+.+..|.+|.+.|.+++++| +++.+++|+-|+..++||++....
T Consensus 143 gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 143 GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred CccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 9999999999987 56899999999999999999999999999999999999999 999999999999999999998777
Q ss_pred EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee---cCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
.+.+..|...|+++.|.|+|.-+++|+.|++.++||++..+ ..... ...+|++++||..|++|++|..|..+.+||
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 77777777799999999999999999999999999999987 33333 356799999999999999999999999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
.-.+ +.+..+.||.+.+..+++ +|||.-+++||.|.+++||.
T Consensus 302 tlk~-e~vg~L~GHeNRvScl~~---s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKG-ERVGVLAGHENRVSCLGV---SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccc-ceEEEeeccCCeeEEEEE---CCCCcEEEecchhHheeecC
Confidence 9888 899999999999777655 88999999999999999994
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-36 Score=278.85 Aligned_cols=281 Identities=19% Similarity=0.306 Sum_probs=247.7
Q ss_pred HhhccccceeecCCCCceeeecCCCCCCC-CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE
Q 008717 230 LDVQRDSCLFHNTSDSDFSLYSDHQCGRN-RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS 308 (556)
Q Consensus 230 ~~~q~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 308 (556)
...+....+||+.....++..+|.+...+ ....++...++||.+.|..++|+..|++||+++.|-.+++||..+ ...
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--~~~ 184 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--FFR 184 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH--HHH
Confidence 55666777777776655555556555443 344677889999999999999999999999999999999999984 356
Q ss_pred EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
+++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.+|-++.++.+|...|..+..+.||..+++++.|.+|++|-+
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeecccCCCeeEEEEccC---------------CCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcC
Q 008717 389 DGRELESWKGQKTLRISDMAITDD---------------GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK 451 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~v~~s~~---------------g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp 451 (556)
.++........|..+|.+++|.|. +.++.+++.|++|++||+.++. .++.+|..+|..++|+|
T Consensus 265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence 988776666666679999999774 3589999999999999999999 78889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 452 ~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
.|+||+++..|+++++||+++. ++..++..|..-+.+ ..| +.+..++++|+-|.++++|.-
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~--lDf-h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTS--LDF-HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEE--Eec-CCCCceEEeccccceeeeeec
Confidence 9999999999999999999999 999999999887655 455 777889999999999999963
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=269.30 Aligned_cols=267 Identities=21% Similarity=0.342 Sum_probs=233.9
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
.++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.. ..+....+++|.++|..+.|.+|++.|++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc--cccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 45566789999999999999999999999999999999873 3456677889999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
.||+++|++++.++.|...|+++.-..-|. .+.+++.|+++++||++.+.......... .++++.|..++..+++|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccc
Confidence 999999999999999999999888444444 45678899999999999877666555444 8999999999999999999
Q ss_pred CCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---CcceeEEeCccC--ceeEEEEee
Q 008717 422 EAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKR--ARFVIRSCF 494 (556)
Q Consensus 422 d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~---~~~~~~~~~~~~--~~~~i~~~~ 494 (556)
|+.|++||++.+. ..+.+|..+|+.+..+|+|.++++.+.|.++++||++-. ..++..+.+|.. ....+++.|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 9999999999877 788899999999999999999999999999999999742 255788887754 455666666
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
+|++.++.+|+.|..+++||..+...+..+.++.+.|-
T Consensus 275 -sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 275 -SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred -cCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 99999999999999999999999999888888886553
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-36 Score=284.08 Aligned_cols=273 Identities=19% Similarity=0.308 Sum_probs=245.7
Q ss_pred CCCCCcceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE
Q 008717 257 RNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (556)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 335 (556)
+..+|.+.++.+.||+..|.++.|.| .+.+|++++.|+.|+||++...+ .+++++.+|..+|..++|+++|..++++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeee
Confidence 34578999999999999999999999 89999999999999999999633 6889999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
+.|+.|++||++||+++..+. ....++|+.|+||+ +.|++|+.|+.|+.||++++++.+....|-+.|..+.|-++|+
T Consensus 277 sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred ecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999999999986 35568999999988 8899999999999999999998888888888999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCe-ee--eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC--CcceeEEeCccCceeE
Q 008717 415 RIISICREAAILLLDREANF-ER--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD--PKLVSRYKGHKRARFV 489 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~-~~--~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~--~~~~~~~~~~~~~~~~ 489 (556)
.+++.+.|++++||+.+... .. ...+.....++..+|++.+++.-+.|+.|.++.+... ...-..|.||....+.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 99999999999999999887 33 3344566788999999999999999999999997543 1345678999999999
Q ss_pred EEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 490 IRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
+++.| ||||.+|++|+.||.+++||..+-+++.....+++.|.
T Consensus 436 ~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 436 CQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred eeEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 99999 99999999999999999999999999988888876554
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=290.61 Aligned_cols=266 Identities=27% Similarity=0.379 Sum_probs=233.4
Q ss_pred eEEeccc-CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 265 LQILEAH-SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 265 ~~~l~~h-~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
...+.+| ...|.++.|+|+|+++++++.|+.+++|+..+... .....+.+|...|.+++|+|++.++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5555555 78999999999999999999999999999965431 255666899999999999999999999999999999
Q ss_pred EEC-CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 344 WDV-NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 344 wd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++|++||+++++.......|...|++++|+++++.+++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5668999999999999999999999999999999999999999877777777777799999999999999999999
Q ss_pred CeEEEEECCCCee----eeeecCC--ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 423 AAILLLDREANFE----RWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 423 ~~I~i~d~~~~~~----~~~~~~~--~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
+.|++||+.++.. ....+.. +++++.|+|++.++++++.|+.+++||+..+ ..+..+.+|...+..+...+.+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccccc
Confidence 9999999999882 3333333 5899999999999999999999999999998 8999999998864444344448
Q ss_pred CCCcEEEEeeCCCcEEEEEcCCCceeeeecCC-Cccc
Q 008717 497 FEQAFIASGSEDSQNVPEILLSESVAAAASSL-DNFV 532 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v 532 (556)
+.+.++++|+.|+.|++|++.++..+....++ ...+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~ 425 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAV 425 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCce
Confidence 89999999999999999999998888888877 4443
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-34 Score=260.14 Aligned_cols=260 Identities=16% Similarity=0.267 Sum_probs=235.8
Q ss_pred CCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE
Q 008717 256 GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (556)
Q Consensus 256 ~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 335 (556)
..|..|-+..+++++|.+.|.|+++.|...++++|+.|++++|||+.++ ++..++.+|-..|..+++|+-..|++++
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEe
Confidence 4577888999999999999999999999999999999999999999987 6778999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCE
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
+.|+.|+.||+...+.++.+-+|-+.|.|++.+|.-..|++|+.|.++++||++++.......+|...|..+.+.|....
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999998777777777779999999998889
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++|+.|++|++||++.++ .....|...+.+++.+|....+++++.|. |+-|++..+ ..++.+.+|...+..+..
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-~f~~nlsgh~~iintl~~- 368 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-EFLQNLSGHNAIINTLSV- 368 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc-chhhccccccceeeeeee-
Confidence 9999999999999999998 77888999999999999999999998665 999999998 788889999987555332
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
. +..++++|+++|.+.+||.+++.-.+.
T Consensus 369 --n-sD~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 369 --N-SDGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred --c-cCceEEEcCCceEEEEEecCcCccccc
Confidence 3 445788999999999999998865443
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-34 Score=263.30 Aligned_cols=268 Identities=18% Similarity=0.259 Sum_probs=242.1
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
....+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++ .....+.+|.+.|..+.|+..|+++++|+.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 4667788899999999999999999999999999999999987 4578899999999999999999999999999899
Q ss_pred EEEECCC-CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 342 RRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 342 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
++||..+ -++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-.......|...|..+..+.||.++++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999976 567888889999999999999999999999999999999998766666666666999999999999999999
Q ss_pred CCCeEEEEECCCCe--eeeeecCCceEEEEEcCC---------------CCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 421 REAAILLLDREANF--ERWIEEEEVITSFSLSKD---------------NKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 421 ~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~---------------~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
.|.+|++|-+.++. ..+..|..+|.+++|-|. ++++.+++.|++|++||+.++ .++.++.+|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~gh 333 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGH 333 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecc
Confidence 99999999999986 777889999999999772 358999999999999999999 999999999
Q ss_pred cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccccce
Q 008717 484 KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVSSYF 536 (556)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~ 536 (556)
.+.+.. +.| +|.|+||+++.+|+++++||+.++........+.+++.+..
T Consensus 334 dnwVr~--~af-~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 334 DNWVRG--VAF-SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred cceeee--eEE-cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 998555 566 99999999999999999999999999888888887765433
No 21
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-34 Score=287.57 Aligned_cols=252 Identities=25% Similarity=0.397 Sum_probs=218.3
Q ss_pred eeEEec-ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----------------------------Ce--------
Q 008717 264 TLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----------------------------GQ-------- 306 (556)
Q Consensus 264 ~~~~l~-~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~----------------------------~~-------- 306 (556)
..+.+. +|.+.||++.||+||+|||+||.|+.|+||.+... ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 445566 89999999999999999999999999999998650 00
Q ss_pred ---------------------eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEE
Q 008717 307 ---------------------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (556)
Q Consensus 307 ---------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 365 (556)
.+++..+.+|.+.|..+.||.+ ++|++++.|.+|++|++...+|+..|. |..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 0234457799999999999965 699999999999999999999999996 88899999
Q ss_pred EEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeee----eeec
Q 008717 366 GWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFER----WIEE 440 (556)
Q Consensus 366 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~----~~~~ 440 (556)
+|+| |.++|++|+-||.|++|++...++..|...+. -|++++|.|||+..++|+.+|.+++|+....+.. +..+
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 89999999999999999999999999988885 8999999999999999999999999999987711 1111
Q ss_pred ------CCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEE
Q 008717 441 ------EEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVP 513 (556)
Q Consensus 441 ------~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~i 513 (556)
...|+.+.|.|.. ..+++.+.|..|+|+|.++. .++..|+|+......+++.| +.||++|+++++|..|||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEE
Confidence 2379999999844 45788888999999999888 89999999887766788888 779999999999999999
Q ss_pred EEcCCCc
Q 008717 514 EILLSES 520 (556)
Q Consensus 514 wd~~~~~ 520 (556)
|+.....
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9985433
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-33 Score=280.88 Aligned_cols=208 Identities=21% Similarity=0.333 Sum_probs=195.5
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
....++-||.++|..+.|+|+.++|+++|.|+++++|.+.+. ..+-.+.+|..+|+++.|+|-|-|+||++.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 456679999999999999999999999999999999999876 56677889999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
+|......+.+.+.+|-+.|.|+.|+|++.++++|+.|.+|++||+.++....++.+|.++|.+++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999998877777777777899999999999999999999
Q ss_pred CeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
+.|.+||+.++. ..+.+|.+.|.++.||.+|..||+|+.|++|++||+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999988 778899999999999999999999999999999998654
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=272.17 Aligned_cols=258 Identities=17% Similarity=0.278 Sum_probs=226.4
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
-+...+||...+.++++||||+++|||+.||.|+|||..++ -+..++..|+..|+.+.|+..|+.+++.+.||+|+.
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 34456799999999999999999999999999999999976 678999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCC-cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 344 WDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 344 wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
||+...+..+++... .....|++..|.|..+++|+.|. .|++|+++++++.....+|.++|.+++|+|+|..|++++.
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 999999999999865 45678889999999999999887 6999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCC--eeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc----------------
Q 008717 422 EAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH---------------- 483 (556)
Q Consensus 422 d~~I~i~d~~~~--~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~---------------- 483 (556)
|.+|++||+-.. +.....+...+..++|+|+|+.|++++.||.|.+||+... ..+..+.+.
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~-~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA-VQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc-eeeccccchhhccccccccceeehh
Confidence 999999998776 3677788899999999999999999999999999999765 333222211
Q ss_pred --cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 484 --KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 484 --~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
....+...+++ ++||.+|++|++.+.|++|++.++-++....
T Consensus 578 ~sa~~K~Ftti~y-SaDG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 578 NSAKGKTFTTICY-SADGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred hcccCCceEEEEE-cCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence 11233455777 9999999999999999999999988876543
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=270.04 Aligned_cols=284 Identities=16% Similarity=0.321 Sum_probs=245.1
Q ss_pred hccccceeecCCCCceeeecCCCCCCCCCCc-ceeEEecccCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCCeeEE
Q 008717 232 VQRDSCLFHNTSDSDFSLYSDHQCGRNRIPS-QTLQILEAHSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSL 309 (556)
Q Consensus 232 ~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~l~~h~~~V~~~~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~ 309 (556)
.+...+-||......+..+.........+|. ..++.+.-...+|..++|+..|.+||.|+. -|.+-||++.+. ..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sY 342 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SY 342 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ce
Confidence 4556677888877777777777666666664 567788878889999999999999999865 489999999865 45
Q ss_pred EEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC
Q 008717 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (556)
Q Consensus 310 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~ 389 (556)
+...++|...+++++++|||+++++|+.||.|+|||..+|-|..+|..|.+.|+.+.|+..|+.+++++.||+|+.||+.
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCe-EEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeE
Q 008717 390 -GRELESWKGQKTLRISDMAITDDGKRIISICREAA-ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (556)
Q Consensus 390 -~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I 465 (556)
.+..+++.....-...|++..|.|..+++|+.|.. |.+|++++++ ..+.+|.++|.+++|+|++..|++++.|.+|
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 46667776666557889999999999999998874 9999999999 6778999999999999999999999999999
Q ss_pred EEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 466 ~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
++||+-.....+.++...... +.+.| +|+|+-|++++-||.|.+||...+..+
T Consensus 503 RiW~if~s~~~vEtl~i~sdv---l~vsf-rPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIRSDV---LAVSF-RPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEEEeeccCceeeeEeeccce---eEEEE-cCCCCeEEEEEecceEEEEEhhhceee
Confidence 999996553566666644442 55777 999999999999999999998876554
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-31 Score=255.27 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=215.2
Q ss_pred CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
..|-+.-.++..|..-|.|+.|+|||.++|+++.||++.+||=.++.....+..-.+|.+.|.+++|+||+..+++++.|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 34567777888999999999999999999999999999999988875544443344899999999999999999999999
Q ss_pred CcEEEEECCCCcEEEE-------------------------------------------EecCCCceEEEEEecCCCeEE
Q 008717 339 EAIRRWDVNSGECLHV-------------------------------------------YEKTGVGLISCGWFLDGGGIF 375 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~-------------------------------------------~~~~~~~v~~i~~~~~~~~l~ 375 (556)
.+++|||+.+++++++ +.+|...|+++..+||+++|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 9999999987765544 236888999999999999999
Q ss_pred EEeCCCcEEEEECCCCeE------------EEeec---------------------------------------------
Q 008717 376 AGMTDKSICLWDLDGREL------------ESWKG--------------------------------------------- 398 (556)
Q Consensus 376 ~~~~dg~i~vwd~~~~~~------------~~~~~--------------------------------------------- 398 (556)
+|+.||.|.-||..++.. ..+..
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 999999999999853211 11100
Q ss_pred ------------------------ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEc
Q 008717 399 ------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLS 450 (556)
Q Consensus 399 ------------------------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~s 450 (556)
.-.....+++++|+++.+++|+.|+.|++|.+.... .....|.++|+++++|
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 001134688999999999999999999999998855 4677899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
||+.|||+|...+.+.+||+.+.......+.-|...+.. +.| +|+..++|+||-|-+|.||++....
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~--~aW-sP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC--VAW-SPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE--EEe-CCCceEEEeccccceEEEEEccChh
Confidence 999999999999999999999874444455568887544 444 9999999999999999999998543
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.1e-32 Score=278.47 Aligned_cols=275 Identities=24% Similarity=0.348 Sum_probs=228.5
Q ss_pred ceeecCCCCceeeecCCCCCCCCC-Cc--ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRI-PS--QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~-~~--~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (556)
+.|++..........+.....+.. .. ...+.+.+|...|.+++|+|+|+++++|+.|++++|||+... ....+++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--~~~~~~l 242 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--GRNLKTL 242 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--CeEEEEe
Confidence 445555444333333333333333 12 367777999999999999999999999999999999999433 2577889
Q ss_pred cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 008717 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
.+|...|++++|+|+++.+++|+.|++|+|||+++++++..+..|...|++++|+++++++++++.|+.|++||+.++..
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred ---EEeecccCC-CeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCC---ceEEEEEcCCCCEEEEEEcCCe
Q 008717 394 ---ESWKGQKTL-RISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEE---VITSFSLSKDNKYLLVNLINQE 464 (556)
Q Consensus 394 ---~~~~~~~~~-~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~---~i~~v~~sp~~~~l~~~~~dg~ 464 (556)
......... .++++.|+|++.++++++.|+.+++||+.... ..+.+|.. .+.+...++.+.++++|+.|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 344444443 68999999999999999999999999999887 55555554 4556667889999999999999
Q ss_pred EEEEEcCCCCcceeEEeCc-cCceeEEEEeecCCCCcEEEEee--CCCcEEEEEcC
Q 008717 465 IHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFIASGS--EDSQNVPEILL 517 (556)
Q Consensus 465 I~lwd~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~ 517 (556)
|++||+.++ ..+..+.+| ...+ ....+ +|...++++++ .|+.+++|...
T Consensus 403 v~~~~~~s~-~~~~~l~~h~~~~~--~~~~~-~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 403 VYVWDSSSG-GILQRLEGHSKAAV--SDLSS-HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCcc-chhhhhcCCCCCce--ecccc-CCCcCeeeecCcCCCceEEEecCC
Confidence 999999997 899999999 5543 33444 89999999998 68999999754
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.6e-32 Score=255.53 Aligned_cols=270 Identities=17% Similarity=0.310 Sum_probs=234.8
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
++..+...+....+....+|..++..+.++..|+++|.++.|+.+|+||++++.|+++.+||..++ .....+.-|..
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~~q~f~~~s~ 319 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TVKQQFEFHSA 319 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eEEEeeeeccC
Confidence 344445555666777778899999999999999999999999999999999999999999999876 45567777888
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
+-..+.|-. ...+++++.|+.|+++.+....++.++.+|.+.|.++.|+|.|..|++++.|+++++|+........-..
T Consensus 320 ~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 320 PALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 878889974 4578999999999999999999999999999999999999999999999999999999986544333344
Q ss_pred ccCCCeeEEEEccCC---------CEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 399 QKTLRISDMAITDDG---------KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g---------~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
.|...|+.+.|+|+| ..+++++.|++|++||...+. ..+..|..+|.+++|+|+|+|+|+|+.||.|.+
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 455589999999864 568999999999999999998 777899999999999999999999999999999
Q ss_pred EEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
|+++++ ++++.+.+... + ..+|| +.+|.+|..+-.||.+++-|++
T Consensus 479 ws~~~~-~l~~s~~~~~~-I--fel~W-n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 479 WSTKTG-KLVKSYQGTGG-I--FELCW-NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccccch-heeEeecCCCe-E--EEEEE-cCCCCEEEEEecCCCceEEEec
Confidence 999999 89999887655 3 33666 8899999999999999999875
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=262.07 Aligned_cols=268 Identities=18% Similarity=0.291 Sum_probs=228.0
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
+-+..++..+.++||+...+. .-..+..|.++|.++.|+++|.++++|+.+|.|++|+..-+ .++.+..
T Consensus 109 RRLltgs~SGEFtLWNg~~fn-------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----nVk~~~a 177 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFN-------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----NVKIIQA 177 (464)
T ss_pred ceeEeecccccEEEecCceee-------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----hhHHhhH
Confidence 445566777788888764332 22345689999999999999999999999999999998732 3344555
Q ss_pred CC-CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 008717 316 HR-KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 316 h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 394 (556)
|. ..|++++|+|++..+++|+.||+|+|||....+....+.+|.-.|.+++|+|.-..+++|+.|..|++||.+++...
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 55 89999999999999999999999999999988888889999999999999999999999999999999999987666
Q ss_pred EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcC
Q 008717 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~ 471 (556)
.....|...|..+.|+|++++|++++.|..+++||+++.+ ..+.+|...++++.|+| ...+|.+|+.||.|..|.+.
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 6566666699999999999999999999999999999766 77888999999999999 45788899999999999998
Q ss_pred CCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
........-.+|...++. ..| +|=|.+|++|+.|.++++|...
T Consensus 338 ~~~p~~~i~~AHd~~iws--l~~-hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 338 LEEPLGEIPPAHDGEIWS--LAY-HPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccccCCCcccccceee--eec-cccceeEeecCCCcceeeeccC
Confidence 541333344678888666 555 9999999999999999999643
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-30 Score=252.73 Aligned_cols=258 Identities=26% Similarity=0.381 Sum_probs=224.1
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
+++++|.++|.+++|+|++++|++++.||.+++|++.++. ....+..|...+..+.|+|+++++++++.||.|++||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4677999999999999999999999999999999998653 4566778999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
+.+++.+..+..|...+.++.|++++.++++++.++.|.+||+++.........+...+.+++|+|++.++++++.++.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99988888888888899999999998888888889999999998655544444555589999999999988888889999
Q ss_pred EEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
++||+++.+ ..+..+...+.++.|+|+++.+++++.++.|++||++++ +.+..+..|...+.. +.| +|++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~--~~~-~~~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNS--VAF-SPDGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEE--EEE-cCCCcEEE
Confidence 999998776 555577779999999999999999999999999999987 788888788876544 555 88899999
Q ss_pred EeeCCCcEEEEEcCCCceeeeecCCCc
Q 008717 504 SGSEDSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 504 sgs~dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
+++.||.|++|++.++........+..
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~~~~~ 262 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLSGHTN 262 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEccccCC
Confidence 888899999999998887776665543
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-31 Score=232.38 Aligned_cols=245 Identities=22% Similarity=0.342 Sum_probs=209.1
Q ss_pred eeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCeeEEEEEe-cCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
..+.+++|++.|+.++|+|- |..||+|+.|+.|+||+...+....+...+ .+|...|.+++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46788999999999999997 899999999999999999865555555444 4799999999999999999999999999
Q ss_pred EEEECCCC--cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---CeEEEeecccCCCeeEEEEccCCCEE
Q 008717 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 342 ~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
.||.-..+ +++.++++|...|.+++|+++|++|++++.|+.|-+|.+.. -........|...|..+.|+|....|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987644 68999999999999999999999999999999999999963 34455666677789999999999999
Q ss_pred EEEeCCCeEEEEECC-CCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 417 ISICREAAILLLDRE-ANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~-~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++++.|++|++|+.. ... .++.+|...|.+++|+|.|..|++++.|++++||-..+. .-..|...++.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~-- 238 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYD-- 238 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEe--
Confidence 999999999999987 332 667788889999999999999999999999999986643 11235566665
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+.+ . ...|++++.|+.|+++.-..
T Consensus 239 v~W-~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 VPW-D--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eee-c--ccceEeccCCCEEEEEEecC
Confidence 444 2 45799999999999997654
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.5e-33 Score=257.28 Aligned_cols=256 Identities=16% Similarity=0.262 Sum_probs=217.5
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
..-+..|..+.|.|+|+.|++|+..|.+.+|+-.+ +.....++.|+.+|.++.|++++.++++|+.+|.|++|+..-
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 34456899999999999999999999999999742 233345678999999999999999999999999999999854
Q ss_pred CcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 349 GECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 349 ~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
. .++.+..| ...|.+++|+|+...|++++.||+|+|||....+......+|.-.|.+++|+|....+++++.|+.|++
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 4 44555555 489999999999999999999999999999754443444555558999999999999999999999999
Q ss_pred EECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC-CCcEEEE
Q 008717 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIAS 504 (556)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s 504 (556)
||.+++. ..+..|...|..+.|+|++++|++++.|..++++|+++. +.+.++++|...+.. +.| +| ...++.+
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~--~~W-hP~~~~lfts 324 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTS--LTW-HPLNESLFTS 324 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhhee--ecc-ccccccceee
Confidence 9999998 778889999999999999999999999999999999977 889999999998655 455 55 5678999
Q ss_pred eeCCCcEEEEEcCCCce-eeeecCCCccc
Q 008717 505 GSEDSQNVPEILLSESV-AAAASSLDNFV 532 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~-~~~~~~~~~~v 532 (556)
|+.||.|..|.+...++ ......+++.+
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccce
Confidence 99999999999985444 34445666544
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-31 Score=231.49 Aligned_cols=240 Identities=16% Similarity=0.266 Sum_probs=207.7
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc--EEEEEecCCCce
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGL 362 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 362 (556)
-+|++++.|-+|++|...++ .+..+++..++.|..+...|+++.|++++. ..|++||++++. ++.+|.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 47999999999999999988 677888888889999999999999998876 589999998875 589999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eee-ee
Q 008717 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW-IE 439 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~-~~ 439 (556)
+++.|..+|+.+++|+.||+++|||++.-.......+. .+|+++..+|+...|+++..+|.|++||+.... ... ..
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999986666666655 499999999999999999999999999999886 333 34
Q ss_pred cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-----CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 440 ~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
....|.++.+.|||.+++.+...|..++|++-+. .+++.+|+.|...+ +++.+ |||+++||++|.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i--l~C~l-SPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI--LRCLL-SPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE--EEEEE-CCCCcEEEeecCCceEEEE
Confidence 4678999999999999999999999999998643 24677788888763 45666 9999999999999999999
Q ss_pred EcCCC-ceeeeecCCCccc
Q 008717 515 ILLSE-SVAAAASSLDNFV 532 (556)
Q Consensus 515 d~~~~-~~~~~~~~~~~~v 532 (556)
+..+- ++...+.++.+++
T Consensus 243 n~~~~~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWV 261 (311)
T ss_pred ecCCceeeEEEeecCCceE
Confidence 99987 5555566666443
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=260.00 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=225.4
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
+.+..|...|.++.|+|...+++++-.+|.|.|||.++. ..++.+.-.+-+|.+..|-+-.+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 445568999999999999999999999999999999876 57788888889999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEcc-CCCEEEEEeCCC
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~ 423 (556)
.+|++.+..|..|..-|.+++.+|.-.++++++.|-.|++||.+.. ...+.+.+|...|.+++|+| |.+.+++++-|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 9999999999999999999999999999999999999999999863 44556667777999999999 557899999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCCC--CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCC
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~--~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (556)
+|++|.+.+.. .++.+|...|+|+.+-+-| .||++|+.|.+|+|||..+. .+++++.||.+.+.. ++| +|.-
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~--v~f-hp~l 239 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSF--VFF-HPEL 239 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceE--EEe-cCCC
Confidence 99999999887 7888999999999998855 79999999999999999998 999999999998544 444 9999
Q ss_pred cEEEEeeCCCcEEEEEcCCCce
Q 008717 500 AFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
..|++||+||+|+||+-.+-++
T Consensus 240 piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred cEEEEecCCccEEEecCcceeh
Confidence 9999999999999998776544
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-30 Score=238.54 Aligned_cols=248 Identities=19% Similarity=0.292 Sum_probs=209.8
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
......+.+|++.|.++.||.+|.+||||+.+|.|+||+..++.. ...+...-..|.-+.|+|.+..|++|+.||.+
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~---~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE---QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce---EEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 446778899999999999999999999999999999999998743 34444455778899999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE-Eeec----------------------
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE-SWKG---------------------- 398 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~---------------------- 398 (556)
.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.++... .+..
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 99999998888999999999999999999999999999999999999864332 2220
Q ss_pred ----------------------------ccCCCeeEEEEcc---CCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEE
Q 008717 399 ----------------------------QKTLRISDMAITD---DGKRIISICREAAILLLDREANF-ERWIEEEEVITS 446 (556)
Q Consensus 399 ----------------------------~~~~~v~~v~~s~---~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~ 446 (556)
.+...+.|+.+.| .-.+.++|+-||+|.|||+...+ +....|...|+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 0000122233333 33467888999999999999988 777789999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 447 v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+.|-+ ..+|++++.+|.|+.||.+++ ++..++.||...+.. ... +|+.++++++|.|++.+||+..
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~--f~l-s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILD--FAL-SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeE--EEE-cCCCcEEEEecCCCeEEEEecC
Confidence 99998 789999999999999999999 999999999999766 455 8999999999999999999864
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-31 Score=245.39 Aligned_cols=426 Identities=19% Similarity=0.222 Sum_probs=287.4
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH--------HHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHH
Q 008717 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS--------VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSAS 133 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~--------~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~ 133 (556)
-..+-+.+..|.+....|..+.++|..=+ +.-+.. .-..|.+....|.-.+|+..|+.--++-.
T Consensus 48 ~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr------- 119 (519)
T KOG0293|consen 48 IPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR------- 119 (519)
T ss_pred cccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh-------
Confidence 34477888888888888988888876543 111111 12346667777888887777665211110
Q ss_pred HHHHHHHHHHHHhc-------------------CChHHHHHHHhhcccccccChh-hHHHhhh-ccccCCcccccCCCCC
Q 008717 134 FLILEQKFLELLRR-------------------DKVSAALNSLRSEIVPLQINMS-RVHELAS-CIISPSKSLTLGDSGQ 192 (556)
Q Consensus 134 ~~i~~q~~~ell~~-------------------~~~~~a~~~L~~~l~pl~~~~~-~~~~l~~-~l~~~~~~~~~~~~~~ 192 (556)
.-+.+|-|+... .+....+.-|.+-|.|-..-|+ |++.|-. .+...... ..+
T Consensus 120 --~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~-----cvy 192 (519)
T KOG0293|consen 120 --KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDS-----CVY 192 (519)
T ss_pred --hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhH-----hHH
Confidence 122333333211 1233334444444444333332 3333211 11110000 000
Q ss_pred CchhHHHHHHHHHHHHhcCCCCccCCcchHHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCC----cceeEEe
Q 008717 193 DTEDEKSRSKFLAKLQKLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIP----SQTLQIL 268 (556)
Q Consensus 193 ~~~~~~~r~~l~~~l~~~~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~l 268 (556)
.. + -.-+..++........+|...-.. -+.+......+.|++.+....+...|.+..+|... -+..+++
T Consensus 193 hn----s-ldsvsll~Dh~c~~~qip~qt~qi--l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl 265 (519)
T KOG0293|consen 193 HN----S-LDSVSLLSDHFCGRLQIPSQTWQI--LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL 265 (519)
T ss_pred hc----c-cchhhhhhhcccCcccCCchhhhh--HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee
Confidence 00 0 001344555555455555433332 23344445566677666655555666555444322 4568899
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe-cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
.+|..+|..+.||||.++|++|+.|..+.+||+.++... +.+ .+|...+.+++|.|||..+++|+.|+++..||++
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~---~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR---HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh---hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 999999999999999999999999999999999987432 222 2356789999999999999999999999999986
Q ss_pred CCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 348 SGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 348 ~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
|......++. ...|.+++..+||+++++.+.|..|++++.++..-+.....+. +|++++.|.||+++++.-.+..|+
T Consensus 343 -gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~-~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 343 -GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ-PITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred -cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC-ceeEEEEcCCCcEEEEEcccCeeE
Confidence 4444445443 3568999999999999999999999999998765543333333 899999999999999999999999
Q ss_pred EEECCCCe--eeeeecCCc--eEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC-CCc
Q 008717 427 LLDREANF--ERWIEEEEV--ITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQA 500 (556)
Q Consensus 427 i~d~~~~~--~~~~~~~~~--i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 500 (556)
+||+.... .++.+|... +..-+|-- +..++++|++|+.|+||+..++ +++..+.||...+.+ +.| +| +..
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNc--Vsw-NP~~p~ 496 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNC--VSW-NPADPE 496 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeE--Eec-CCCCHH
Confidence 99999776 666676543 33344543 5589999999999999999999 999999999988666 445 55 556
Q ss_pred EEEEeeCCCcEEEEEcCC
Q 008717 501 FIASGSEDSQNVPEILLS 518 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~ 518 (556)
.+|++|+||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 799999999999997653
No 36
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=3.8e-30 Score=231.82 Aligned_cols=323 Identities=20% Similarity=0.305 Sum_probs=245.5
Q ss_pred cCCCCccCCcchHHHHHHHHHhhccccceeecCCC---------CceeeecC--CCCCCCCCCcceeEEecccCCcEEEE
Q 008717 210 LLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSD---------SDFSLYSD--HQCGRNRIPSQTLQILEAHSDEVWFL 278 (556)
Q Consensus 210 ~~~~~~~~p~~rl~~ll~~~~~~q~~~~~~~~~~~---------~~~~~~~d--~~~~~~~~~~~~~~~l~~h~~~V~~~ 278 (556)
..|.....|++||..|+..+++...+......+.. ..+.+--+ .+......+.-....+..|++++.+.
T Consensus 39 ~~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~a 118 (430)
T KOG0640|consen 39 MTPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAA 118 (430)
T ss_pred cCcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeee
Confidence 34566778899999999888776655544332221 12233222 22222233344566788899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEeec---------------CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 279 QFSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 279 ~~sp~g~~las~s~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
+|||||.++|||+.|.+|+|.|++. ......++++..|...|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 9999999999999999999999871 1122467889999999999999999999999999999999
Q ss_pred EECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe---ecccCCCeeEEEEccCCCEEEE
Q 008717 344 WDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW---KGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 344 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
+|+......+.++ ....+|.++.|+|.|.++++|....++++||+++-+.... ...|.+.|+++.+++.|++.++
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence 9996543222222 2456899999999999999999999999999987554322 2355668999999999999999
Q ss_pred EeCCCeEEEEECCCCe-eeee--ec-CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc---CceeEEE
Q 008717 419 ICREAAILLLDREANF-ERWI--EE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK---RARFVIR 491 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~-~~~~--~~-~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~---~~~~~i~ 491 (556)
++.||.|++||--+++ ...+ .| ...|.+..|..+|+|+++.+.|..+++|.+.++ +++..+.|.. .......
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhh
Confidence 9999999999988777 2222 23 567999999999999999999999999999999 8999998762 2223344
Q ss_pred EeecCCCCcEEEEeeC-CCcEEEEEcCCCceeee-ecCCCccccc
Q 008717 492 SCFGGFEQAFIASGSE-DSQNVPEILLSESVAAA-ASSLDNFVSS 534 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~-dg~v~iwd~~~~~~~~~-~~~~~~~v~~ 534 (556)
..| +....|++.-.+ .+.+.-||-++...+.. ..+|.+.+.+
T Consensus 358 AvF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 358 AVF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred hhh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 566 667777776665 57899999998765544 4567766543
No 37
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.4e-29 Score=229.91 Aligned_cols=258 Identities=17% Similarity=0.211 Sum_probs=221.2
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC--CCcE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--EEAI 341 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i 341 (556)
+.+.+..-.+.|.++.|+++|.++++++.|.++++||..++ +..+++..+.-.|..++|....+.++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 34455557789999999999999999999999999999977 455777777778999999877777777766 8899
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
+..++.+.+.++.|.+|...|++++.+|-+..+++++.|++|++||++..+........ .-..++|+|+|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999965555444443 3556899999999999998
Q ss_pred CCeEEEEECCCCe----eeee---ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCce-eEEEEe
Q 008717 422 EAAILLLDREANF----ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-FVIRSC 493 (556)
Q Consensus 422 d~~I~i~d~~~~~----~~~~---~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~-~~i~~~ 493 (556)
...|++||++... ..+. +.....+.+.|||||++|+.++..+.+++.|.-+| ....++.++.... ..+.++
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEE
Confidence 8899999999763 2222 34677899999999999999999999999999998 8999998887643 235567
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
| +||+++|++|+.||+|++|+++++..+....+.
T Consensus 240 f-tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 240 F-TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred E-CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 7 999999999999999999999999998888775
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=224.44 Aligned_cols=269 Identities=19% Similarity=0.306 Sum_probs=216.4
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEe-cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQIL-EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l-~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
.+.+.+.+..+.+|....... -.+..++ .+|+..|.+++|+|.|++||+||.|.++.||.-. ++.++++..+.+
T Consensus 29 ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEG 103 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEG 103 (312)
T ss_pred EEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeec
Confidence 345566777778876553111 2333444 4899999999999999999999999999999877 457789999999
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-C-
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-G- 390 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~- 390 (556)
|.+.|.|++|+++|++||+|+.|+.|.||.+..+ ++...++.|...|..+.|+|....|++++.|.+|++|+-. .
T Consensus 104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 104 HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 9999999999999999999999999999999744 5788999999999999999999999999999999999876 3
Q ss_pred -CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 391 -~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
-........+...|.+++|++.|..+++++.|++|+||-..+.- ...|...+..+.|. ...|++++.|+.|++|.
T Consensus 184 dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 184 DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 23344444454589999999999999999999999999866432 22356788999998 45799999999999997
Q ss_pred cCCCC-----cc-eeEEeCccCceeEEEEeecCCC-CcEEEEeeCCCcEEEEEcC
Q 008717 470 IESDP-----KL-VSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 470 ~~~~~-----~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~sgs~dg~v~iwd~~ 517 (556)
-.... ++ ...-..|...+++ +.| .|. .+.|++|+.||.|++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNS--VQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccce--EEE-cCCCCCceeecCCCceEEEEEec
Confidence 65420 11 1233567776555 444 773 7789999999999999875
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.3e-29 Score=245.94 Aligned_cols=246 Identities=25% Similarity=0.378 Sum_probs=215.0
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
+....+.+|...+..+.|+|+++++++++.||.|++|++.++ .....+..|...|.++.|++++.++++++.+|.|.
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 118 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc---cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence 356778899999999999999999999999999999999865 34566778989999999999988999888899999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
+||+.+++....+..|...+.+++|+|++.++++++.|+.|++||+++.........+...+.+++|+|+++.+++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence 99999999999998888899999999998888888889999999998655444444555589999999999999999999
Q ss_pred CeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
+.|++||++++. ..+..+...+.++.|+|++.++++++.|+.|++||+.++ +....+.+|...+.. +.| ++++.
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~--~~~-~~~~~ 274 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNSVTS--LAW-SPDGK 274 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCcEEE--EEE-CCCCC
Confidence 999999999876 333377889999999999988888888999999999987 788888888877544 555 88999
Q ss_pred EEEEeeCCCcEEEEE
Q 008717 501 FIASGSEDSQNVPEI 515 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd 515 (556)
+|++++.||.|++|+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 999999999999996
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=263.23 Aligned_cols=281 Identities=16% Similarity=0.211 Sum_probs=240.9
Q ss_pred ccceeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe
Q 008717 235 DSCLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (556)
Q Consensus 235 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (556)
....||++....++....+....|+.. ..++..+..|.++|..++|+|++.++++|+.|-.|+||+..+. +++.++
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTL 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhh
Confidence 344577777766655555555555544 5678889999999999999999999999999999999999865 788999
Q ss_pred cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---
Q 008717 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--- 390 (556)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--- 390 (556)
.+|-+.|..+.|++.-.+|+++|.|.+|+||+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+.+
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred -----C---------------------eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----eeeeec
Q 008717 391 -----R---------------------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEE 440 (556)
Q Consensus 391 -----~---------------------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~ 440 (556)
+ .++....+|...|+-++|+|.-..+++|+.|..|++|.+...+ .+..+|
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH 249 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH 249 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc
Confidence 1 1233445677789999999999999999999999999988766 566789
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
...|+++-|+|...++++.++|++|++||+... +.+++++...+..+++. . +|..+++++| .|+-+.+|.+..+.
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~la--a-hP~lNLfAAg-HDsGm~VFkleREr 324 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILA--A-HPELNLFAAG-HDSGMIVFKLERER 324 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEE--e-cCCcceeeee-cCCceEEEEEcccC
Confidence 999999999999999999999999999999887 88999987777766643 3 8899877654 66668888888666
Q ss_pred eee
Q 008717 521 VAA 523 (556)
Q Consensus 521 ~~~ 523 (556)
+..
T Consensus 325 pa~ 327 (1202)
T KOG0292|consen 325 PAY 327 (1202)
T ss_pred ceE
Confidence 543
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.6e-31 Score=260.54 Aligned_cols=272 Identities=19% Similarity=0.274 Sum_probs=234.4
Q ss_pred cceeEEecc-cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC--EEEEEeCC
Q 008717 262 SQTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQE 338 (556)
Q Consensus 262 ~~~~~~l~~-h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~d 338 (556)
.+.++.++. |++||..++|+|.|..+++|+.|+.++|||+..+ .+.+.|.+|.+.|.++.|+|+-+ .|++|..|
T Consensus 94 gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 94 GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC---EEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 467778887 9999999999999999999999999999999865 68899999999999999999764 58899999
Q ss_pred CcEEEEECCCCc-EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----------------EE------
Q 008717 339 EAIRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL----------------ES------ 395 (556)
Q Consensus 339 g~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------------~~------ 395 (556)
+++++||+.+.. ++.++..|.+.|++++|.+|+..+++++.|..+.+||+...+. ..
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 999999998654 4788889999999999999999999999999999999842100 00
Q ss_pred -eec----------------------------------------------------------------------------
Q 008717 396 -WKG---------------------------------------------------------------------------- 398 (556)
Q Consensus 396 -~~~---------------------------------------------------------------------------- 398 (556)
+..
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 008717 399 -------------------------------------------------------------------------------- 398 (556)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (556)
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence
Q ss_pred --------------------------------------------------ccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 399 --------------------------------------------------QKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 399 --------------------------------------------------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
.|...|++++++|+.+.+++|+.|.+.+||
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 344478899999999999999999999999
Q ss_pred ECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 429 DREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 429 d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
++.... ..+.+|...+.++.|+|..+.+++++.|++|+||.+.+. .++++|.||...+ .++.| -.+|+.|++++
T Consensus 491 ~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aV--lra~F-~~~~~qliS~~ 566 (775)
T KOG0319|consen 491 DLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAV--LRASF-IRNGKQLISAG 566 (775)
T ss_pred cccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCcccee--Eeeee-eeCCcEEEecc
Confidence 999766 778899999999999999999999999999999999999 9999999999985 55888 66889999999
Q ss_pred CCCcEEEEEcCCCceeeeecCCCcccccceeeEe
Q 008717 507 EDSQNVPEILLSESVAAAASSLDNFVSSYFCLHL 540 (556)
Q Consensus 507 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 540 (556)
.||-|++|++.++........|.+-|=...+.+.
T Consensus 567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred CCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 9999999999999998888888765544444333
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.2e-31 Score=243.09 Aligned_cols=259 Identities=19% Similarity=0.272 Sum_probs=218.7
Q ss_pred ceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE
Q 008717 246 DFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324 (556)
Q Consensus 246 ~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 324 (556)
.++...|.+..+|+.. ..++..+.||++.|.|+.|. .+.|++|+.|.+|+|||++++ +++.++.+|...|..+.
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---e~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---EPLNTLIHHCEAVLHLR 284 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---chhhHHhhhcceeEEEE
Confidence 3444555555555443 57788999999999999995 558999999999999999988 67788999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCc---EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC
Q 008717 325 WSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (556)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 401 (556)
|+ ..++++++.|.++.+||+.+.. +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+......+|.
T Consensus 285 f~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 285 FS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred Ee--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccc
Confidence 97 5699999999999999997654 345667899999999985 6799999999999999999988877777777
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc----
Q 008717 402 LRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK---- 475 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~---- 475 (556)
..|.|+.+ .|+++++|+.|.+|++||...+. ..+.+|..-|.++.|. .+.+++|+.||+|++||+.++..
T Consensus 361 RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence 68888877 47899999999999999999998 6778999999999994 77899999999999999976522
Q ss_pred ----ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 476 ----LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 476 ----~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
++.++..|.+.++. ..| |...|++++.|.+|.|||+.++...
T Consensus 437 ~~~~Cl~~lv~hsgRVFr--LQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFR--LQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccchHHHhhhhccceeEE--Eee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 45566778877655 666 7788999999999999999987764
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=258.15 Aligned_cols=256 Identities=16% Similarity=0.254 Sum_probs=222.4
Q ss_pred CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEe
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCG 336 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~ 336 (556)
..++.--+.+.||+..|.+++...+|.+|+||+.|.++++|.++++ ....++....+|++.|.+++++..+ .+|+++|
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 3344445589999999999997778899999999999999998532 2234556678999999999998755 5899999
Q ss_pred CCCcEEEEECCCCcE-----EE----EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEE
Q 008717 337 QEEAIRRWDVNSGEC-----LH----VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (556)
Q Consensus 337 ~dg~i~iwd~~~~~~-----~~----~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 407 (556)
.|+++++|++...+. +. +...|...|++++.+|+.+.++||+.|++.++|+++...+.....+|...|.|+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V 511 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV 511 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence 999999999965221 11 223688999999999999999999999999999999877777777777799999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC
Q 008717 408 AITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 408 ~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
.|+|..+.++++|.|++|+||.+.+.. .++.+|...|..+.|-.+|+.|++++.||-|++|+++++ .++.++.+|.+
T Consensus 512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~D 590 (775)
T KOG0319|consen 512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHND 590 (775)
T ss_pred EeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccc
Confidence 999999999999999999999999998 777889999999999999999999999999999999999 99999999999
Q ss_pred ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 486 ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 486 ~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.++.+.. ++.+.++++|+.||.|.+|.=.+
T Consensus 591 rvWaL~~---~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 591 RVWALSV---SPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeEEEee---cCccceeEecCCCeEEEEeecCc
Confidence 9887443 78888999999999999995443
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=228.28 Aligned_cols=266 Identities=18% Similarity=0.256 Sum_probs=223.5
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
.|+.+++.|..|.+|....+ .+-..++++|++.|..+.|.+|++.|++++.|.+|+.||++++ +..+.+.+
T Consensus 60 s~~aSgG~Dr~I~LWnv~gd------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG---~~~rk~k~ 130 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGD------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG---KRIRKHKG 130 (338)
T ss_pred CeEeecCCcceEEEEecccc------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc---eeeehhcc
Confidence 45555666677777764332 2345677899999999999999999999999999999999988 56788899
Q ss_pred CCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 008717 316 HRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 316 h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 394 (556)
|..-|+.+.-+.-| ..+.+++.||++++||+++..++++++ ....++++.|..++..+++|+-|+.|++||++.+...
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~ 209 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL 209 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce
Confidence 99999999855444 466788889999999999988888875 3457899999999999999999999999999887777
Q ss_pred EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeeeec----CCceEEEEEcCCCCEEEEEEcCCe
Q 008717 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEE----EEVITSFSLSKDNKYLLVNLINQE 464 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~----~~~i~~v~~sp~~~~l~~~~~dg~ 464 (556)
....+|...|+.+..+|+|.++++-+.|.++++||++... ..+.++ ......++|+|+++++.+|+.|..
T Consensus 210 ~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 210 YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 7677777799999999999999999999999999998643 223333 234567899999999999999999
Q ss_pred EEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 465 I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+++||..+. ..+..+.||.+.+.. +.| +|...+|.+++.|.+|++=.
T Consensus 290 vyvwd~~~r-~~lyklpGh~gsvn~--~~F-hp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 290 VYVWDTTSR-RILYKLPGHYGSVNE--VDF-HPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEeecccc-cEEEEcCCcceeEEE--eee-cCCCcEEEEeccCceeEeec
Confidence 999999887 899999999998544 666 99999999999999998743
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.7e-31 Score=249.74 Aligned_cols=265 Identities=18% Similarity=0.287 Sum_probs=224.5
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
.+++.+.+..+.+|+-.. ...+++++.||..+|..++|+++|..+.++|.|+.+++||++++ .....+. .
T Consensus 229 LlLS~gmD~~vklW~vy~------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---~~~~~f~-~ 298 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYD------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---QVLSRFH-L 298 (503)
T ss_pred EEEecCCCceEEEEEEec------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc---eEEEEEe-c
Confidence 345677788888886543 36789999999999999999999999999999999999999988 4445543 3
Q ss_pred CCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 317 RKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 317 ~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|.++|.++++++.|+.+++|+.+......
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 4568999999998 889999999999999999999999999999999999999999999999999999999998644332
Q ss_pred -eecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-----eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 396 -WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 396 -~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
..........++..+|++.++++-+.|+.|.+|.+...- ..+.+| .+.-..+.|||||++|++|+.||.+.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 222333367899999999999999999999999865432 445555 355678999999999999999999999
Q ss_pred EEcCCCCcceeEEeCccCceeEEEEeecCCC-CcEEEEeeCCCcEEEEE
Q 008717 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQNVPEI 515 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~sgs~dg~v~iwd 515 (556)
||.++. +++..+++|.+.+ +.+.| +|. ...+|+++.||.|++|+
T Consensus 459 wdwkt~-kl~~~lkah~~~c--i~v~w-HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 459 WDWKTT-KLVSKLKAHDQPC--IGVDW-HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eechhh-hhhhccccCCcce--EEEEe-cCCCcceeEecccCceeEecC
Confidence 999998 9999999998874 44666 664 56799999999999996
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.5e-29 Score=275.87 Aligned_cols=248 Identities=16% Similarity=0.259 Sum_probs=206.5
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----Cee-EEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcE
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~----~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 341 (556)
+.+|.+.|.+++|+|+|++||+|+.|+.|+||+.... ... .....+. +...|.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997531 000 1122333 456899999987 47899999999999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEc-cCCCEEEEE
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-DDGKRIISI 419 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~ 419 (556)
++||+.+++.+..+..|...|++++|+| ++.+|++|+.||.|++||++++........+ ..+.++.|+ ++|.++++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7899999999999999999865544333333 379999995 578999999
Q ss_pred eCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-----CcceeEEeCccCceeEEE
Q 008717 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-----~~~~~~~~~~~~~~~~i~ 491 (556)
+.|+.|++||+++.. ....+|...|+++.|. ++.+|++++.|+.|++||++.. ..++..+.+|...+..
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~-- 713 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF-- 713 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE--
Confidence 999999999998764 4566889999999997 7889999999999999999742 2567889999887555
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.| ++++.+|++|+.||.|++|+.....+
T Consensus 714 v~~-s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 714 VGL-SVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred EEE-cCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 445 88999999999999999999876543
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.4e-31 Score=244.41 Aligned_cols=231 Identities=21% Similarity=0.346 Sum_probs=200.7
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
....|.|+.+ |...+++|..|++|+|||.++- .+...+.+|++.|.|+.|. .+.|++|+.|.+|++||+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 4567999998 4557999999999999999754 5678899999999999984 6799999999999999999999
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe---EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
++.++-.|...|..+.|+ ..++++++.|.++.+||+.... +.....+|-..|+.+.|+. +++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 999999999999999997 5699999999999999997532 2333445555899999864 59999999999999
Q ss_pred EECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
|+..+.. ..+.+|...|.|+.+ .|+++++|++|.+|++||+..+ .+++.+.||..-+..| -| |.+.|++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRci--RF---d~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCI--RF---DNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhe--ee---cCceeeec
Confidence 9999998 667789999988877 5899999999999999999999 9999999999986663 34 78899999
Q ss_pred eCCCcEEEEEcCCCc
Q 008717 506 SEDSQNVPEILLSES 520 (556)
Q Consensus 506 s~dg~v~iwd~~~~~ 520 (556)
+.||+|+|||+..+.
T Consensus 417 aYDGkikvWdl~aal 431 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAAL 431 (499)
T ss_pred cccceEEEEeccccc
Confidence 999999999998654
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=246.68 Aligned_cols=270 Identities=19% Similarity=0.297 Sum_probs=232.7
Q ss_pred CCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEE
Q 008717 253 HQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (556)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 332 (556)
..+..+.+|......+..|.+.|..+.|-++...|++|+.|..|++|++... ......++.+..++|+.+.|.+++.++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceE
Confidence 5566788899999999999999999999999999999999999999999854 355778888999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecccCCCeeEEEEcc
Q 008717 333 LTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITD 411 (556)
Q Consensus 333 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~s~ 411 (556)
++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+..... +...... .+.+|..+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCS- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEec-
Confidence 9999999999999999999999999999999999998777799999999999999976433 3333332 67777776
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC--cee
Q 008717 412 DGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARF 488 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~--~~~ 488 (556)
+..+++|-.|++|++||.++.. ....+..+.|+++..+++|..|++++.|.++.+.|+++. .....+..... .--
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccc
Confidence 5578899999999999999888 666677789999999999999999999999999999998 77777754321 111
Q ss_pred EEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 489 VIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 489 ~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
..+++| ||++.|+++||.||.|+||++.++++........
T Consensus 390 wtrvvf-Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 390 WTRVVF-SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred cceeEE-CCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 355778 9999999999999999999999999987765443
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=222.00 Aligned_cols=269 Identities=18% Similarity=0.257 Sum_probs=227.1
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw 344 (556)
+.+++|...|.+++|+.+|..|++|+.|+++.+|++... .........+|.+.|-.++|+| +...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999854 3334455678999999999988 56789999999999999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
|++.+++..........+ -+.|+|+|+++++++.|..|.+.|.++.++........ .+..++|+-++.+++.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeecCCCCEEEEecCCce
Confidence 999999999887665555 47899999999999999999999999877665555444 7889999988888888788899
Q ss_pred EEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEE
Q 008717 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (556)
Q Consensus 425 I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 502 (556)
|.|.....-+ ..+..|.....|+.|+|+|+|+|+|+.|..+.+||+... -+++.+..+.-++.. +.| +.||++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRT--lSF-S~dg~~l 246 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRT--LSF-SHDGRML 246 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEE--EEe-ccCccee
Confidence 9999988776 677789999999999999999999999999999999987 888999989888555 445 8899999
Q ss_pred EEeeCCCcEEEEEcCCCceeeee--cCCCcccccceeeEeE
Q 008717 503 ASGSEDSQNVPEILLSESVAAAA--SSLDNFVSSYFCLHLF 541 (556)
Q Consensus 503 ~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~ 541 (556)
|+||+|..|-|=++.+|..+... .+....|+|...-++.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLL 287 (313)
T ss_pred eccCccceEEeEecccCCeEEEeeccCCceeEEecCCCcee
Confidence 99999999999999888765543 3455566665554433
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-29 Score=233.67 Aligned_cols=267 Identities=18% Similarity=0.249 Sum_probs=220.4
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCC---EEEEEeCCCcEEEEEeecCCe-eEEEE
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ-VSLKH 311 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~---~las~s~dg~i~iwd~~~~~~-~~~~~ 311 (556)
.-+++++.++...+| ...++....+.||.++|.+++|..... .+++++.|.++++|.++.+.. ....+
T Consensus 116 ~~IltgsYDg~~riW--------d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~ 187 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIW--------DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK 187 (423)
T ss_pred ceEEEeecCCeeEEE--------ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence 344555555555554 556889999999999999988876433 599999999999999985432 22233
Q ss_pred EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC-------------------------CCcEEEEEecCCCceEEEE
Q 008717 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-------------------------SGECLHVYEKTGVGLISCG 366 (556)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-------------------------~~~~~~~~~~~~~~v~~i~ 366 (556)
.-.||...|.++...++|..+++|+.|.+|+||+.. ++.++.++.+|..+|.++.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 345999999999999999999999999999999932 1235667889999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-----eeeeecC
Q 008717 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEE 441 (556)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~ 441 (556)
|++ ...+++++.|.+|+.||+.++.......... ..+++.++|..++|++|+.|..|++||.+++. ..+.+|.
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 986 7899999999999999998765544443333 79999999999999999999999999999876 7788999
Q ss_pred CceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 442 EVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 442 ~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
..|.++.|+|.. .+|++++.|+++++||+++...++..+.+|...+.. +.| .++.+|++|+.|++|+|+.-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~--vdW--~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS--VDW--NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE--Eec--cCCceEEeccCcceEEEecc
Confidence 999999999966 557889999999999999985599999999988655 555 36779999999999999853
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-28 Score=218.25 Aligned_cols=243 Identities=19% Similarity=0.298 Sum_probs=209.6
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.+.||..+++.+.++.+|.+|.+++.|.++.||-..++ +.+-++.+|+++|+|+....+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 46899999999999999999999999999999988766 567889999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-----CCcEEEEECC-------CCe-EEEeecccCCCeeEEEEccCC
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLD-------GRE-LESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~vwd~~-------~~~-~~~~~~~~~~~v~~v~~s~~g 413 (556)
.+|+++..++ ...+|..+.|+++|++++.+.. .+.|.++|++ +.+ ...+.... ..++.+-|.|-+
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~ 159 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLG 159 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccC
Confidence 9999999987 4567999999999999888764 3579999997 233 34444443 589999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc--------------
Q 008717 414 KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL-------------- 476 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~-------------- 476 (556)
++|++|..||.|.+||.+++. .....|...|+.+.++||..++++++.|.+-++||+.+. ++
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAA 238 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccccccee
Confidence 999999999999999999986 334568889999999999999999999999999998764 22
Q ss_pred -----------------------------------------eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 477 -----------------------------------------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 477 -----------------------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+..+++|-+++.. +.| +|+|+..++|++||.|++..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--vAf-hPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--VAF-HPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--eEE-CCCCcccccCCCCceEEEEE
Confidence 2334567788655 555 99999999999999999986
Q ss_pred cCC
Q 008717 516 LLS 518 (556)
Q Consensus 516 ~~~ 518 (556)
+..
T Consensus 316 Fd~ 318 (327)
T KOG0643|consen 316 FDS 318 (327)
T ss_pred ecc
Confidence 654
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=229.17 Aligned_cols=290 Identities=17% Similarity=0.218 Sum_probs=232.8
Q ss_pred CcchHHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcE
Q 008717 218 PEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSA 296 (556)
Q Consensus 218 p~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i 296 (556)
+|-+|..++.-.+.|...- .+.+......+...|.+..+|++. ++...++.||...|..+++|+-..|+++++.|+.|
T Consensus 139 apwKl~rVi~gHlgWVr~v-avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSV-AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred CcceehhhhhhccceEEEE-eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 3455666555444443221 122222222333334444444443 56677899999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEE
Q 008717 297 IIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA 376 (556)
Q Consensus 297 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 376 (556)
+.||+..+ +.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++
T Consensus 218 KCwDLe~n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 218 KCWDLEYN---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred EEEechhh---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 99999865 677889999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCC
Q 008717 377 GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK 454 (556)
Q Consensus 377 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~ 454 (556)
|+.|++|++||++.++......+|...|.+++.+|....+++++.| .|+-|++..+. ..+.+|..-|++++...||
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 9999999999998766666666666699999999999999998876 69999999888 5577899999999999877
Q ss_pred EEEEEEcCCeEEEEEcCCCCcceeEEeCc--------cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 455 YLLVNLINQEIHLWSIESDPKLVSRYKGH--------KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 455 ~l~~~~~dg~I~lwd~~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
++++|+.+|.|.+||.+++ ...+....- ...+ ..+|| ...|..|++|..|.+|++|.-.
T Consensus 373 v~~~G~dng~~~fwdwksg-~nyQ~~~t~vqpGSl~sEagI--~as~f-Dktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSG-HNYQRGQTIVQPGSLESEAGI--FASCF-DKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eEEEcCCceEEEEEecCcC-cccccccccccCCccccccce--eEEee-cccCceEEeccCCcceEEEecc
Confidence 7889999999999999988 333333111 1223 33677 8889999999999999999654
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.6e-28 Score=233.49 Aligned_cols=254 Identities=18% Similarity=0.282 Sum_probs=215.2
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC----
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---- 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---- 338 (556)
.....+..|...++-..|||.|-|+|+|...|+|+|||.... ...+...++.-.++|..++|++|++.|++.+..
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 346677889999999999999999999999999999999843 334667788889999999999999999988764
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
|.+.+|| +|..+..+.+|...|++++|-|... ++++|+.|+.|.+|+=.--+.......|..-|+|+.|+|||++++
T Consensus 129 g~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 129 GHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred eEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4566776 6788889999999999999998654 599999999999998666666666667777999999999999999
Q ss_pred EEeCCCeEEEEECCCCe--eee---eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc----------------
Q 008717 418 SICREAAILLLDREANF--ERW---IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL---------------- 476 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~~---~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~---------------- 476 (556)
+++.||+|.+||-.++. ..+ .+|.+.|..++|+||+..+++++.|.+++|||+.+. ++
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEE
Confidence 99999999999999987 333 379999999999999999999999999999999875 33
Q ss_pred ---------------------------eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 477 ---------------------------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 477 ---------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
+..+.||...++.+. . ++|+++|++|+.||.|.-|+..++.--.
T Consensus 286 ~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt--v-~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 286 CLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT--V-SPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred EEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE--E-cCCCCEEEeeccCceEEEEecCCccccc
Confidence 333457777765533 3 8999999999999999999998876543
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=256.31 Aligned_cols=253 Identities=15% Similarity=0.208 Sum_probs=225.3
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.++..+..|..++|+|...+++++-..|.|++||..-+ .++..|..|+++|..++|+|++..+++|+.|..|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 35566788999999999999999999999999999854 677889999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
++.+|+.++.+|-..|..+.|++.-.+|++++.|.+|+||+..++.......+|...|.|..|+|....++++|-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred EEECCCCe-------------------------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-C
Q 008717 427 LLDREANF-------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P 474 (556)
Q Consensus 427 i~d~~~~~-------------------------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-~ 474 (556)
+||+..-+ ..+.+|+..|+-++|+|.-..+++|+.|..|++|.+... .
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99986311 233468889999999999999999999999999998643 1
Q ss_pred cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
-.+.+.+||.+.+.+ +.| +|...+|+|.|+|++|+|||+.....+.+.
T Consensus 241 WEvDtcrgH~nnVss--vlf-hp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSS--VLF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eeehhhhcccCCcce--EEe-cCccceeEecCCCccEEEEecccccceeee
Confidence 245678899998655 566 999999999999999999999877665443
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.5e-28 Score=228.51 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=212.4
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+.+.+++||...|+.+.|+|+...+++++.|..|+||.+.... .......|..+|+.+..+|.|.||++++.||+.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEEEecCCceE
Confidence 57788999999999999999999999999999999999998653 445667899999999999999999999999999
Q ss_pred EEEECCCCcEEEEEec--CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 342 RRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
.+.|+++|.++..... ..-.+++.+|+|||..|.+|..||.|++||+..+....-+..|.++|..++|+.+|-+++++
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 9999999998877664 34568999999999999999999999999998776666666788899999999999999999
Q ss_pred eCCCeEEEEECCCCe-ee--eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-CcceeEEeCccCceeEEEEeec
Q 008717 420 CREAAILLLDREANF-ER--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~-~~--~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
+.|+.|++||++..+ .. .......+.++.|.+.|.+|+.++.|=.|++++-.+. ...+..+..|.+.... +.|
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~--v~F- 484 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTG--VRF- 484 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccce--eee-
Confidence 999999999999877 22 2234457999999999999999988777777774332 2567777777755433 445
Q ss_pred CCCCcEEEEeeCCCcEEEEEc
Q 008717 496 GFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~ 516 (556)
+.+.++++++|.|..++++.+
T Consensus 485 g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceEEeeccchhheEEeec
Confidence 778899999999999888764
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6.7e-29 Score=228.81 Aligned_cols=263 Identities=18% Similarity=0.234 Sum_probs=224.0
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
..+..|..|+++|.+++.+|+.+++|||+.|....+|++.++. ....+.+|...|+++.||.+|.+||||+.+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 4567889999999999999999999999999999999999873 6678899999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
||+..++.....+...-..+.=+.|+|-+..|++|+.||.+.+|.+.++...+...+|..++++=.|.|+|+.++++..|
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 99999999888887666778889999999999999999999999998866666666677799999999999999999999
Q ss_pred CeEEEEECCCCe--eeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC--------ccCceeEEE
Q 008717 423 AAILLLDREANF--ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG--------HKRARFVIR 491 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~--------~~~~~~~i~ 491 (556)
|+|++||+.++. .... ......+++.++..+..++.|+.++.+++-+..++ +.+....+ +.....++.
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhh
Confidence 999999999998 2222 23556788999999999999999999999998888 77766663 334444444
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
...++..-.+.|+|+-||+|.|||+...++.......+
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~ 328 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED 328 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCC
Confidence 55556677788999999999999998877765554433
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.4e-28 Score=248.09 Aligned_cols=253 Identities=13% Similarity=0.159 Sum_probs=196.9
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee----------EEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 339 (556)
|-..|.....++++..+++++.+..+..|+...+... .....+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666667777777777777777777775432111 01124678999999999999 889999999999
Q ss_pred cEEEEECCCC-------cEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 340 AIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 340 ~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
+|++||+.++ +.+..+.+|...|.+++|+|++ +.|++++.|+.|++||++++........|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6899999999999999987766555555556899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe--eeeeecCCc-eEEEEEcCCCCEEEEEE----cCCeEEEEEcCCCCcceeEEeCcc
Q 008717 412 DGKRIISICREAAILLLDREANF--ERWIEEEEV-ITSFSLSKDNKYLLVNL----INQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~-i~~v~~sp~~~~l~~~~----~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+|..|++++.|++|++||++++. .....|.+. +..+.|.+++..+++++ .|+.|++||+++...++.....+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 99999999999999999999887 445556554 45678999888877654 478999999987645555554444
Q ss_pred CceeEEEEeecCCCCcEEEEee-CCCcEEEEEcCCCceeeee
Q 008717 485 RARFVIRSCFGGFEQAFIASGS-EDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~ 525 (556)
... +...++++++++|++|+ .|+.|++||+.++++....
T Consensus 259 ~~~--~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 259 SSA--LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCc--eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 332 22445599999998887 5999999999998876543
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-27 Score=264.27 Aligned_cols=239 Identities=14% Similarity=0.247 Sum_probs=196.7
Q ss_pred cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 008717 271 HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 271 h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 348 (556)
+...|.+++|+| ++.+||+++.||+|++||+.++ .....+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 356899999988 5789999999999999999865 45677889999999999997 789999999999999999999
Q ss_pred CcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCe-EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 349 GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
+.++..+..+ ..+.++.|++ ++.++++|+.||.|++||++... .......|...|.++.|. ++.++++++.|++|+
T Consensus 608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 9988888754 5789999964 79999999999999999997643 222333455589999997 678999999999999
Q ss_pred EEECCCC------e--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-----------ccCce
Q 008717 427 LLDREAN------F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-----------HKRAR 487 (556)
Q Consensus 427 i~d~~~~------~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~-----------~~~~~ 487 (556)
+||++.. . ..+.+|...+.+++|+|++.+|++|+.|+.|++|+.... ..+..+.. +....
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~ 764 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP-MPVLSYKFKTIDPVSGLEVDDASQ 764 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC-CceEEEecccCCcccccccCCCCc
Confidence 9999743 2 456678889999999999999999999999999998665 33332211 11112
Q ss_pred eEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 488 FVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 488 ~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
.+..++| ++++..|++|+.||.|+||++
T Consensus 765 ~V~~v~w-s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 765 FISSVCW-RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEE-cCCCCeEEEecCCCcEEEEec
Confidence 2344556 999999999999999999986
No 59
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-28 Score=240.41 Aligned_cols=269 Identities=12% Similarity=0.169 Sum_probs=226.1
Q ss_pred ceeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
.-|||+....+...-.+...+|+.. ...++.++-..-+|.++.|-+..+++++|+.|..|+||+.++. ..++.|..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---ekV~~FeA 95 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---EKVKTFEA 95 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---eeeEEeec
Confidence 4477777766654444444445444 4567788888999999999999999999999999999999877 67789999
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
|.+.|.+++.+|...+++++|.|-+|++||.+.+ .+.++|++|..-|.+++|+| |.+.+++++-|++|++|.+.....
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence 9999999999999999999999999999999765 68899999999999999999 788999999999999999976544
Q ss_pred EEeecccCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 394 ESWKGQKTLRISDMAITDDG--KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
......|...|+|+.|-+-| .++++|+.|.+|+|||.++.. .++.+|...|..+.|+|.-..+++|++||+++||+
T Consensus 176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 44444566699999998865 589999999999999999988 77889999999999999999999999999999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEE
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNV 512 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~ 512 (556)
..+- ++..++.-.-..++.|.. .+.+..|+.|.+.|.|.
T Consensus 256 s~Ty-~lE~tLn~gleRvW~I~~---~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 256 SKTY-KLEKTLNYGLERVWCIAA---HKGDGKIAVGFDEGSVT 294 (794)
T ss_pred Ccce-ehhhhhhcCCceEEEEee---cCCCCeEEEeccCCcEE
Confidence 9887 777777666666666443 45666677777666553
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-29 Score=219.31 Aligned_cols=241 Identities=13% Similarity=0.182 Sum_probs=204.9
Q ss_pred cCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 008717 271 HSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 271 h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 348 (556)
-.+.+..++|+++. +.+++++.||++++||.. ....++..++.|...|.++.|++ +...+++++.|++|++|+..-
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 45789999999954 578889999999999965 33468889999999999999998 556788889999999999999
Q ss_pred CcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEcc-CCCEEEEEeCCCeE
Q 008717 349 GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREAAI 425 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~I 425 (556)
++.+.++.+|...|...+|+| ..+.+++++.|+.+++||++. ++... ...|...+.++.|+. +...+++|+.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence 999999999999999999999 688999999999999999974 33334 444446899999998 45678999999999
Q ss_pred EEEECCCCe---eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcE
Q 008717 426 LLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 426 ~i~d~~~~~---~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
+.||++.-+ ..+.+|.-.|..+.|||.. ..|++++.|-+++|||...+...+.++..|..-+..+.+.. -++.+
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~--~~~~~ 293 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL--FDPGQ 293 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc--ccCce
Confidence 999999877 5667899999999999964 67899999999999999866578888888887665544443 26789
Q ss_pred EEEeeCCCcEEEEEc
Q 008717 502 IASGSEDSQNVPEIL 516 (556)
Q Consensus 502 l~sgs~dg~v~iwd~ 516 (556)
+|+.+-|+.++||+.
T Consensus 294 vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VASTGWDELLYVWNP 308 (311)
T ss_pred eeecccccceeeecc
Confidence 999999999999984
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=234.82 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=216.2
Q ss_pred CCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEe-cCCCCCeEEEEeCCCCCEEEE
Q 008717 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRL-SGHRKPVFTVSWSPNDHQLLT 334 (556)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~v~~l~~s~~~~~l~s 334 (556)
+..+|...-..+++|+..|.++++.|.|..|++|+.|.+|++||+..-.. ....+.+ ......|.++.|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 35678888889999999999999999999999999999999999973211 1111222 334567999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEE------------EecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCC--eEEEee--
Q 008717 335 CGQEEAIRRWDVNSGECLHV------------YEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGR--ELESWK-- 397 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~------------~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~--~~~~~~-- 397 (556)
.+.....+|+|-...+.+.. -++|...++|.+|+|+ ...|++++.||++++||+... +...+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 99989999999654333322 2468888999999995 467899999999999999642 222221
Q ss_pred c--ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-----eeeeecCC--ceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 398 G--QKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 398 ~--~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~--~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
. ...-.++.++|+|||++|++|+.||.|.+||..+.. .....|.. .|+|++||+||++|++-+.|+++++|
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 1 122268999999999999999999999999986654 33345655 89999999999999999999999999
Q ss_pred EcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC------CCcEEEEEcCCCceeeeecCCCc
Q 008717 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~------dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
|++...+++....+-........+|| ||+.++|++|+. .|++++||..+-..++.+.-...
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a 458 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA 458 (641)
T ss_pred eccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc
Confidence 99988788888877766555566888 999999999965 56899999888777766654443
No 62
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=215.35 Aligned_cols=248 Identities=20% Similarity=0.207 Sum_probs=210.0
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC--EEEEEeCCC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEE 339 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg 339 (556)
-.++..+..|.++|++++. +|.++|+||.|-+|+|||+.+. .....+..|.+.|+++.|.++-. +|++|+.||
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 3456678899999999998 5899999999999999999865 34456777999999999998765 999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
.|.+|+...-.++..++.|.+.|+.++.+|.++..++.+.|+.+++||+-.++......-.. ..+.+.|+|.|.+++.+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVS 186 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999996544333332222 45669999999998887
Q ss_pred eCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC
Q 008717 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (556)
..+ .|-+|.+.+.. ...+.....+.++.|- ++..|++|..|+.|.+||..+. .+...+.+|...+..+...- .|+
T Consensus 187 ~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-~~~ 262 (362)
T KOG0294|consen 187 GRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-NPE 262 (362)
T ss_pred ecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-cCC
Confidence 764 68999998877 4444445667777776 5678999999999999999887 89999999999988765544 889
Q ss_pred CcEEEEeeCCCcEEEEEcCCC
Q 008717 499 QAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+.+|+++|.||.|+|||+...
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 999999999999999999876
No 63
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=240.20 Aligned_cols=228 Identities=12% Similarity=0.183 Sum_probs=180.9
Q ss_pred EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEECCCCc--------EEEEEecCCC
Q 008717 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE--------CLHVYEKTGV 360 (556)
Q Consensus 290 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~ 360 (556)
|+.++.|++|+.... ..+..+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999998643 466788999999999999996 7899999999999999997642 3456788999
Q ss_pred ceEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eee
Q 008717 361 GLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW 437 (556)
Q Consensus 361 ~v~~i~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~ 437 (556)
.|.+++|+|++..+ ++++.|+.|++||++++.......++ ..|.+++|+|+|.+|++++.|+.|+|||++++. ..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999999988765 68899999999999876543333333 489999999999999999999999999999987 455
Q ss_pred eecCCceEE-----EEEcCCCCEEEEEEcCC----eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 438 IEEEEVITS-----FSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 438 ~~~~~~i~~-----v~~sp~~~~l~~~~~dg----~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++..+++..+..+.... .+...+..++|.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-PLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-ceEEeeeCCCCCEEEEEECC
Confidence 667765433 34568999999988774 799999996446776665444322 22234436678999999999
Q ss_pred CcEEEEEcCCCcee
Q 008717 509 SQNVPEILLSESVA 522 (556)
Q Consensus 509 g~v~iwd~~~~~~~ 522 (556)
++|++|++..+.+.
T Consensus 285 ~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 285 GNCRYYQHSLGSIR 298 (568)
T ss_pred CeEEEEEccCCcEE
Confidence 99999999877543
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.1e-29 Score=217.41 Aligned_cols=255 Identities=20% Similarity=0.284 Sum_probs=219.6
Q ss_pred CCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe
Q 008717 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG 336 (556)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 336 (556)
+..-...-+.++.||++.||+...+.+...-|+++.|-+.+|||.-++.. ++.+ .|..-|..++|+.|.++|++|+
T Consensus 44 r~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde---lhsf-~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 44 RNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE---LHSF-EHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred ccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh---hhhh-hhhheeeeEEecccchhhhccc
Confidence 34445667899999999999999999999999999999999999988743 3554 4888899999999999999999
Q ss_pred CCCcEEEEECCCCc-EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCE
Q 008717 337 QEEAIRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 337 ~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
.+..++|+|++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++.......... +|+++.++++|++
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRI 198 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCE
Confidence 99999999997653 567788999999999999988999999999999999999765544443333 8999999999987
Q ss_pred EEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE-eCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~-~~~~~~~~~i~~~ 493 (556)
+.+ ...+.|.+||..+.. .........|.+.+++|+...+++|++|..++.||..++ ..+..+ ++|.+++.+ +.
T Consensus 199 lTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVhc--Vr 274 (334)
T KOG0278|consen 199 LTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVHC--VR 274 (334)
T ss_pred EEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC-ceeeecccCCCCceEE--EE
Confidence 655 466889999999877 677777888999999999999999999999999999999 666665 899999766 55
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
| +|+|..-++||+||+|++|....++.
T Consensus 275 F-SPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 275 F-SPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred E-CCCCceeeccCCCceEEEEEecCCCc
Confidence 5 99999999999999999998876554
No 65
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=237.95 Aligned_cols=215 Identities=20% Similarity=0.310 Sum_probs=177.1
Q ss_pred EEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCe----eEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCC
Q 008717 266 QILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 339 (556)
..+.+|.+.|++++|+| ++++||+|+.|++|++||+.+++. ...+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34789999999999999 889999999999999999975421 13456788999999999999975 6999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE-EeecccCCCeeEEEEccCCCEEEE
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE-SWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
+|+|||+.+++.+..+..|...|.+++|+|++..|++++.|+.|++||++++... .+..+....+..+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999876544 344443334567889998888776
Q ss_pred Ee----CCCeEEEEECCCCe--eeee--ecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCcceeEEe
Q 008717 419 IC----REAAILLLDREANF--ERWI--EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 419 ~~----~d~~I~i~d~~~~~--~~~~--~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~~~~~~~~~ 481 (556)
++ .|+.|++||+++.. .... .....+....|++++++|++++. |+.|++||+.++ +++....
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~~ 299 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCSS 299 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEee
Confidence 54 47899999998765 2222 23345666789999999998874 999999999987 6655543
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.6e-27 Score=205.11 Aligned_cols=259 Identities=17% Similarity=0.273 Sum_probs=216.9
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
...+.+..+.+|+... ..++++..+|..+|..++.+.|...+++|+.|+.+.+||+.++ +..+.+.+|.+
T Consensus 33 ltcGsdrtvrLWNp~r-------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG---kv~Rr~rgH~a 102 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLR-------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG---KVDRRFRGHLA 102 (307)
T ss_pred EEcCCCceEEeecccc-------cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC---eeeeecccccc
Confidence 3455667777776554 6789999999999999999999999999999999999999988 67789999999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCC--cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 396 (556)
.|+.+.|+.+...+++|+.|.++++||.++. ++++.+......|.++... +..|++|+.||+++.||++.+.+..-
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD 180 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD 180 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh
Confidence 9999999999999999999999999999764 6788888888889999875 67899999999999999997776554
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCc--eEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~--i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
...+ +|++++|++|++..++++-|+++++.|-.+++ ..+.+|... -...+++....++++|++||.+++||+..
T Consensus 181 y~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 181 YFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred hcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 4444 89999999999999999999999999999998 666676544 34556777788999999999999999998
Q ss_pred CCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
. ..+..+..+... .++.+.+ +|.-.-++++.. +.+..|-
T Consensus 259 ~-~~~sk~~~~~~v-~v~dl~~-hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 259 E-TQISKLSVVSTV-IVTDLSC-HPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred c-eeeeeeccCCce-eEEeeec-ccCccceeEecC-Cceecee
Confidence 8 778888766553 3455666 777666665543 4455663
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=236.87 Aligned_cols=261 Identities=13% Similarity=0.253 Sum_probs=224.6
Q ss_pred CceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE
Q 008717 245 SDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324 (556)
Q Consensus 245 ~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 324 (556)
..+.+|..++ .++++++.. +.+.+..|-|.++++++|...|.+.+||+.+. ..+.+...|++.|+.++
T Consensus 394 ~SikiWn~~t-------~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~---~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 394 ESIKIWNRDT-------LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA---SLVETIRAHDGAIWSIS 461 (888)
T ss_pred CcEEEEEccC-------cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh---hhhhhhhccccceeeee
Confidence 3555555443 567777753 38999999999999999999999999999976 45667789999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCC-----CcEEEEEe-------cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 008717 325 WSPNDHQLLTCGQEEAIRRWDVNS-----GECLHVYE-------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (556)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~ 392 (556)
.+||+..+++||.|.+|++||..- |...+.+. .-...|.|+.++|||++++++--|.+|++|-+++-+
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK 541 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence 999999999999999999999731 22111111 135679999999999999999999999999999988
Q ss_pred EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
......+|.-+|.||.++||++.+++|+.|.+|++|-+.-+. ..+++|...|+++.|.|...++.+++.|+.|+-||-
T Consensus 542 FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence 777777777799999999999999999999999999998887 788899999999999999999999999999999998
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
..- +.++++.+|...++.. +. +|+|.+++++|.|.+|++|....+.+
T Consensus 622 ~kF-e~iq~L~~H~~ev~cL--av-~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 622 EKF-EEIQKLDGHHSEVWCL--AV-SPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred hhh-hhheeeccchheeeee--EE-cCCCCeEEeccCCceeEeeeccCcce
Confidence 887 8999999999997663 33 89999999999999999998766443
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-27 Score=234.12 Aligned_cols=277 Identities=20% Similarity=0.252 Sum_probs=226.5
Q ss_pred HHHHhhccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe
Q 008717 227 EKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (556)
Q Consensus 227 ~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~ 306 (556)
...++|. ....+.......+.+|..... .......-+.+.|+++.|+++|.+||+|..+|.|.|||..+.
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~-------~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-- 249 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSG-------SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-- 249 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCC-------ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--
Confidence 3445555 333344444556677765543 233333444899999999999999999999999999999865
Q ss_pred eEEEEEecC-CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCCceEEEEEecCCCeEEEEeCCCcEE
Q 008717 307 VSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384 (556)
Q Consensus 307 ~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 384 (556)
+.+..+.+ |...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.+.
T Consensus 250 -k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~ 326 (484)
T KOG0305|consen 250 -KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVF 326 (484)
T ss_pred -cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceE
Confidence 44566677 99999999998 67899999999999999998776554 888999999999999999999999999999
Q ss_pred EEECCCCeEEEeecccCCCeeEEEEccC-CCEEEEEe--CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEE-
Q 008717 385 LWDLDGRELESWKGQKTLRISDMAITDD-GKRIISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN- 459 (556)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~--~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~- 459 (556)
|||............|...|..++|+|- ...||+|+ .|+.|++||..++. .........|.++.|++..+-|+++
T Consensus 327 Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred eccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec
Confidence 9999766555555566669999999995 45777754 68999999999988 7777788899999999998777764
Q ss_pred -EcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 460 -LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 460 -~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
..++.|.||+..+. +.+..+.+|...+.. +.. +|||..|++|+.|.++++|++-+..
T Consensus 407 G~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~--la~-SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM-KLVAELLGHTSRVLY--LAL-SPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCCCcEEEEecccc-ceeeeecCCcceeEE--EEE-CCCCCEEEEecccCcEEeccccCCC
Confidence 45778999999997 899999999998544 555 9999999999999999999988753
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=223.09 Aligned_cols=278 Identities=19% Similarity=0.238 Sum_probs=230.5
Q ss_pred hhccccceeecCCCCceeeecCCCCCCCCCCc---------ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 008717 231 DVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPS---------QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301 (556)
Q Consensus 231 ~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~ 301 (556)
+.......|++++...++...|+....|++.. +....+--|..+|.|+.||.|...||+|+.||.|+||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 33445566777777667666666666665543 223334458899999999999999999999999999999
Q ss_pred ecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC
Q 008717 302 KEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380 (556)
Q Consensus 302 ~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 380 (556)
.++ .+++.+. .|+..|+|+.||.|+..+++++.|.++++.-+.+|++++.+.+|.+.|+...|.+||.++++++.|
T Consensus 293 ~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 293 ETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred ecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 988 4556665 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEE-eec-ccCCCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCee-eee---ecCCceEEEEEcCCC
Q 008717 381 KSICLWDLDGRELES-WKG-QKTLRISDMAITDDG-KRIISICREAAILLLDREANFE-RWI---EEEEVITSFSLSKDN 453 (556)
Q Consensus 381 g~i~vwd~~~~~~~~-~~~-~~~~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~~-~~~---~~~~~i~~v~~sp~~ 453 (556)
|+|++|+.++.+... +.. ....+|+++..-|.+ ..++++...++|+|.++..... .+. ...+...+.++||.|
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCC
Confidence 999999998755433 322 233478888887754 5788889999999999987762 222 234567788899999
Q ss_pred CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 454 ~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
.++.+.+.|+.++.|.+.++ ++-+++..|...+ |.... +|..+.||+-++||.+++|.
T Consensus 450 ewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdv--IGl~H-HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDV--IGLTH-HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeecC-ceeeeeecccccc--ccccc-CcccchhhhhcccchhhhcC
Confidence 99999999999999999999 8999999998874 44666 89999999999999999995
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=8.3e-27 Score=240.10 Aligned_cols=251 Identities=19% Similarity=0.305 Sum_probs=217.8
Q ss_pred CCCcceeEE-ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC
Q 008717 259 RIPSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337 (556)
Q Consensus 259 ~~~~~~~~~-l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 337 (556)
..+...+.. +.||.+.|+++++..-+.+|++|+.|.+++|||..++ .+...+.+|.+.|.++... +.++++|+.
T Consensus 235 ~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~~~~--~~~~~sgs~ 309 (537)
T KOG0274|consen 235 LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCLTID--PFLLVSGSR 309 (537)
T ss_pred cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEEEcc--CceEeeccC
Confidence 334666777 9999999999999887889999999999999998887 6778999999999999875 567888999
Q ss_pred CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
|.+|++|++.++.++..+.+|..+|.++..+ +.++++|+.|++|++||+.+.+.......|...|+++.+.+. ..++
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~ 386 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLL 386 (537)
T ss_pred CceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEE
Confidence 9999999999999999999999999999986 889999999999999999987777666668789999988765 7999
Q ss_pred EEeCCCeEEEEECCCC-e--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-ccCceeEEEEe
Q 008717 418 SICREAAILLLDREAN-F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSC 493 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~-~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~-~~~~~~~i~~~ 493 (556)
+|+.|++|++||+++. + ..+.+|...+.++.+ .+++|++++.|+.|++||..++ ++++.+.+ |...+.. .+
T Consensus 387 Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~--l~ 461 (537)
T KOG0274|consen 387 SGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSA--LA 461 (537)
T ss_pred eeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC-ceeeeeccCCcccEEE--ee
Confidence 9999999999999999 5 667777777766555 5789999999999999999998 89999998 5566444 22
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
+ ....+++++.||.+++||++++++....
T Consensus 462 ~---~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 462 L---GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred c---CcceEEEEecCCeeEEEecccCchhhhh
Confidence 2 2467889999999999999999886644
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=8e-27 Score=216.06 Aligned_cols=262 Identities=20% Similarity=0.255 Sum_probs=213.3
Q ss_pred CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC---CEEEEEe
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCG 336 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~ 336 (556)
.|+++++.+. |.+.|.++... +++|++|+.||.+++||.. + +..+.+.+|.++|.+++|.... ..+++++
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-C---ceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 3455555554 88999999887 7899999999999999987 3 4678889999999988885433 3599999
Q ss_pred CCCcEEEEECCCCcE----EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC----------------------
Q 008717 337 QEEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---------------------- 390 (556)
Q Consensus 337 ~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---------------------- 390 (556)
.|.++++|.++.++. +....+|...|.++...++|..+++|+.|..|.+|+...
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999987653 334458999999999999999999999999999999321
Q ss_pred ---CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEE
Q 008717 391 ---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (556)
Q Consensus 391 ---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~ 466 (556)
+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++. .........++++..+|..++|++|+.|..|+
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 112233345666999999998 6679999999999999999998 56666778899999999999999999999999
Q ss_pred EEEcCCC--CcceeEEeCccCceeEEEEeecCCCC-cEEEEeeCCCcEEEEEcCCCc-eeeeecCCCccc
Q 008717 467 LWSIESD--PKLVSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQNVPEILLSES-VAAAASSLDNFV 532 (556)
Q Consensus 467 lwd~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v 532 (556)
+||.+++ .-..++|.+|.+-+.. +.| +|.. ..+++|+.|+++++||+++.+ ++..+.++..-|
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVss--vkw-sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSS--VKW-SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhh--eec-CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 9999865 2356788999997555 344 6654 458899999999999999877 777777776544
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-26 Score=241.58 Aligned_cols=275 Identities=18% Similarity=0.295 Sum_probs=221.3
Q ss_pred CCceeeecCCCCCC----CCC-CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec----------C----
Q 008717 244 DSDFSLYSDHQCGR----NRI-PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE----------D---- 304 (556)
Q Consensus 244 ~~~~~~~~d~~~~~----~~~-~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~----------~---- 304 (556)
|..+.+|....... ++. -.+.+.....|.+.|.|+.|+|||++||+||.|+.|.||+... +
T Consensus 36 d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~ 115 (942)
T KOG0973|consen 36 DGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKN 115 (942)
T ss_pred cccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccc
Confidence 44455666544332 111 2456777888999999999999999999999999999999872 0
Q ss_pred -CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcE
Q 008717 305 -GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (556)
Q Consensus 305 -~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 383 (556)
..++....+.+|++.|..++|+|++.+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|
T Consensus 116 vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrti 195 (942)
T KOG0973|consen 116 VESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTL 195 (942)
T ss_pred cceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceE
Confidence 1245778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEee-cc-----cCCCeeEEEEccCCCEEEEEe----CCCeEEEEECCCCe--eeeeecCCceEEEEEcC
Q 008717 384 CLWDLDGRELESWK-GQ-----KTLRISDMAITDDGKRIISIC----REAAILLLDREANF--ERWIEEEEVITSFSLSK 451 (556)
Q Consensus 384 ~vwd~~~~~~~~~~-~~-----~~~~v~~v~~s~~g~~l~~~~----~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp 451 (556)
++|++..-.+.... .. ....+..+.|+|||.+|++.. .-.++.|.+..+.+ ..+.+|.++++++.|+|
T Consensus 196 kvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 196 KVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred EEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 99997653332222 11 112578999999999998764 23468999988877 78899999999999998
Q ss_pred C-----CC------------EEEEEEcCCeEEEEEcCCCCcceeEEeC-ccCceeEEEEeecCCCCcEEEEeeCCCcEEE
Q 008717 452 D-----NK------------YLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQNVP 513 (556)
Q Consensus 452 ~-----~~------------~l~~~~~dg~I~lwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~i 513 (556)
. .+ .+|+|+.|++|-||..... +++..... .... ++.++| +|||..|+.+|.||+|.+
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~S--I~DmsW-spdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKS--IVDMSW-SPDGFSLFACSLDGTVAL 351 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCc--eeeeeE-cCCCCeEEEEecCCeEEE
Confidence 1 11 6789999999999998665 55443322 2223 355677 999999999999999999
Q ss_pred EEcCCCcee
Q 008717 514 EILLSESVA 522 (556)
Q Consensus 514 wd~~~~~~~ 522 (556)
..+..+++-
T Consensus 352 i~Fee~ElG 360 (942)
T KOG0973|consen 352 IHFEEKELG 360 (942)
T ss_pred EEcchHHhC
Confidence 999876653
No 73
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=231.49 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=166.6
Q ss_pred ceeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCe-----eEEEEEecCCCCCeEEEEeCCCCCEE-EEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ-----VSLKHRLSGHRKPVFTVSWSPNDHQL-LTC 335 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~ 335 (556)
..+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.+++. ......+.+|...|.+++|+|++..+ +++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467789999999999999996 78999999999999999975432 12345678999999999999998764 688
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCee-----EEEEc
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS-----DMAIT 410 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-----~v~~s 410 (556)
+.|++|++||+++++.+..+. +...|.+++|+|+|..|++++.|+.|++||++++........|.+.+. ...|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998877775 567899999999999999999999999999997765544444443432 23456
Q ss_pred cCCCEEEEEeCCC----eEEEEECCCCe--eeeeecC---CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 411 DDGKRIISICREA----AILLLDREANF--ERWIEEE---EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 411 ~~g~~l~~~~~d~----~I~i~d~~~~~--~~~~~~~---~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
+++.++++++.|+ .|+|||++... .....+. +.+......++|.++++|+.|+.|++|++..+
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 8889999988774 79999999643 3333332 33333444556899999999999999999765
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=230.39 Aligned_cols=263 Identities=15% Similarity=0.218 Sum_probs=223.1
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
..+.||...|.++++|.+...+++|+ .++++||+..+. ++++++.. +.+.+..|-|.++++++|..+|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL---KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc---ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 34669999999999999998888875 569999999876 56677654 4889999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC------C--CeEEEeec----ccCCCeeEEEEccCC
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD------G--RELESWKG----QKTLRISDMAITDDG 413 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~------~--~~~~~~~~----~~~~~v~~v~~s~~g 413 (556)
+.+...+.+++.|.+.|++++.+||+..+++|+.|.+|++||.. + +++..+.. .-...|.|+.+||||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999984 1 11111110 112279999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++++++--|++|++|-+.+-+ ..+.+|.-||.|+.+|||++.+++|+.|..|++|-+.-| .+-+.+-+|.+.+..
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~-- 597 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMS-- 597 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeE--
Confidence 999999999999999999988 788899999999999999999999999999999999988 899999999999766
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccccceeeEeE
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVSSYFCLHLF 541 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 541 (556)
+.| -|+..+++++|.|+.|+-||-..-+.+....+|. ..+.|+.++
T Consensus 598 V~F-~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~---~ev~cLav~ 643 (888)
T KOG0306|consen 598 VQF-LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH---SEVWCLAVS 643 (888)
T ss_pred EEE-cccceeEEEecCcceEEeechhhhhhheeeccch---heeeeeEEc
Confidence 666 7788999999999999999877655555554443 334454444
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=221.91 Aligned_cols=245 Identities=15% Similarity=0.229 Sum_probs=203.5
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRR 343 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 343 (556)
.+.+...++.|.+++|-.||++||+|...|.|+|||..+. ..+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 3445556788999999999999999999999999996542 3557788999999999999955 56778888899999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
||+.+......+.+|...|.|.+|+|. +..+++|+.||.|++||++........-.|..+|.++.+-|.|..+++++.
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG- 216 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG- 216 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-
Confidence 999998877788999999999999994 558899999999999999865333344444559999999999999988764
Q ss_pred CeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCC
Q 008717 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 423 ~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (556)
+.|++||+.++. .....|...|||+.+..++..|++++-|+.+++||+.+. +.+..+.- .+++.. +.. +|++
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~-~~pvLs--iav-s~dd 291 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKY-PGPVLS--IAV-SPDD 291 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeec-ccceee--EEe-cCCC
Confidence 689999999665 344459999999999999999999999999999998777 88887764 344433 444 8899
Q ss_pred cEEEEeeCCCcEEEEEcCC
Q 008717 500 AFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~ 518 (556)
..++.|..||.+.+=+...
T Consensus 292 ~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ceEEEecccceeeeehhhc
Confidence 9999999999988875443
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7e-26 Score=204.05 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=202.8
Q ss_pred cccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 269 EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 269 ~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
....+.|.+++||| ...+++++|.||+|++|+++..+.... +....|.++|.+++|+.||..+++|+.|+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 34678899999999 556677899999999999997555433 5667899999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCceEEEEEecCCC--eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
+++ +..+..|..+|.++.|-+... .|++|+.|++|+.||.+............ +++++..- ...++++..+..|
T Consensus 103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r~i 178 (347)
T KOG0647|consen 103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAERHI 178 (347)
T ss_pred CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCCcE
Confidence 995 567788999999999998665 79999999999999998654433333332 67776654 3478888999999
Q ss_pred EEEECCCCeeeee----ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-CcceeEEeCccC------ceeEEEEee
Q 008717 426 LLLDREANFERWI----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKR------ARFVIRSCF 494 (556)
Q Consensus 426 ~i~d~~~~~~~~~----~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-~~~~~~~~~~~~------~~~~i~~~~ 494 (556)
.+|+++.+...+. ...-.+.|++..+|....+.|+-+|.+-|..+..+ .+.-.+|+.|.. .++.+....
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999988762222 23456889999999888899999999999988763 133445666652 366666555
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCc
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
++|....|++++.||++.+||-.....+.....++.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 599999999999999999999776555544444443
No 77
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.4e-27 Score=203.66 Aligned_cols=247 Identities=15% Similarity=0.238 Sum_probs=203.5
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEE
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd 345 (556)
-..|.+.|..+...--|++|||++.|++|+|+.+..+++..++.++.+|.++|..++|.. -|..|++|+.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 347999999998888999999999999999999998777678899999999999999976 789999999999999999
Q ss_pred CCCCcE--EEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCC---eEEEeecccCCCeeEEEEccC---C--
Q 008717 346 VNSGEC--LHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDD---G-- 413 (556)
Q Consensus 346 ~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~s~~---g-- 413 (556)
-.+|+- ......|...|++++|.|. |-.|++++.||.|.+.+.++. ....+...|.-.|++++|.|- |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 888753 3455678999999999994 667899999999999988643 333444555568999999986 4
Q ss_pred ---------CEEEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCC----CEEEEEEcCCeEEEEEcCCCCcc
Q 008717 414 ---------KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSIESDPKL 476 (556)
Q Consensus 414 ---------~~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~----~~l~~~~~dg~I~lwd~~~~~~~ 476 (556)
+.|++|+.|+.|+||+..... .++.+|...|..++|.|.- .+|++++.||++.||-.+...+.
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999999866 5578899999999999954 57999999999999987633111
Q ss_pred --eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 477 --VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 477 --~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
...+......++. +.| |+.|++|+.++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~--vSW-S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWR--VSW-SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEE--EEE-eccccEEEEecCCcEEEEEEeC
Confidence 1222333444444 566 8899999999999999999643
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.2e-27 Score=220.91 Aligned_cols=243 Identities=16% Similarity=0.284 Sum_probs=204.9
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
..+.+|.|..+.|+.+.|.++++++++++.|+.+++|++... ....++.+|.+.|+++.|......+++|+.|.+|+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 367788999999999999999999999999999999999865 67789999999999999998777799999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
+||+....|.+++-. ...+..|+.+ ...+++|..|++|++||+++.........+. .|+++..+++|..+++++.|
T Consensus 287 ~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCC
Confidence 999999888877653 3345666665 5578889999999999998766555555544 89999999999999999999
Q ss_pred CeEEEEECCCCe--eeeee----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 423 AAILLLDREANF--ERWIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
.++.+.|+++.. ..+.. .....+.+.|||++.|+++|+.||.|+||++.++ ++...+........+..+.| +
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W-~ 440 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSW-N 440 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEE-c
Confidence 999999999987 22222 2345889999999999999999999999999998 88888776554422233445 9
Q ss_pred CCCcEEEEeeCCCcEEEE
Q 008717 497 FEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iw 514 (556)
|.|..+++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-25 Score=190.28 Aligned_cols=253 Identities=18% Similarity=0.240 Sum_probs=205.3
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC--CeeEEEEEecCCCCCeEEEEeCCC----CCEEEE
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSGHRKPVFTVSWSPN----DHQLLT 334 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s 334 (556)
|.-..+.-+.|++.|.|.+|||+|.+||+|++|.+|++..++.. +....-..+..|++.|..++|-.+ +..|++
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 34455667789999999999999999999999999999876632 222334567789999999999653 457777
Q ss_pred EeC-CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-------ccCCCeeE
Q 008717 335 CGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRISD 406 (556)
Q Consensus 335 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~ 406 (556)
++. |..|++-|..+|+..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-........ ...+.|.+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 665 6788888999999999999999988876 34478899999999999999998433222211 12347999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---CcceeEEe
Q 008717 407 MAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYK 481 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~---~~~~~~~~ 481 (556)
++..|.|+.+++|-.|....+||++.+. ..+..|...|.++.|||...|+++++.|..|++-|+... .-++....
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 9999999999999999999999999998 778889999999999999999999999999999998753 12344455
Q ss_pred CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
.|... .|.+.| +|..--+++.+.|.++.+|.+.
T Consensus 317 ehkdk--~i~~rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDK--AIQCRW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCc--eEEEEe-cCccceeeeccCcceEEEeccC
Confidence 67766 355666 8888888899999999999764
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=214.17 Aligned_cols=243 Identities=13% Similarity=0.188 Sum_probs=211.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
..|.++...|....+++|+.|..+.++|..++ +.+..+.||...|+.+.++|+...+++++.|..|+||......+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 45778888888788999999999999999876 567889999999999999999999999999999999999888888
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc--CCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q 008717 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDR 430 (556)
Q Consensus 353 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~ 430 (556)
.....|..+|+.+..+|.|.||++++.||...+.|++++......... .-.+++.+|+|||..|.+|..|+.|+|||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 888899999999999999999999999999999999876554444332 236899999999999999999999999999
Q ss_pred CCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 431 EANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 431 ~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
.+.. ..+.+|.++|..++|+.+|-||++++.|+.|++||++.. +...++...... .+...+| .+.|.+++.++.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccc-cceeEEE-cCCCCeEEeecce
Confidence 9887 778889999999999999999999999999999999987 777777655432 2234666 8899999999988
Q ss_pred CcEEEEEcCCCce
Q 008717 509 SQNVPEILLSESV 521 (556)
Q Consensus 509 g~v~iwd~~~~~~ 521 (556)
=.|++++-.+..-
T Consensus 454 l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 454 LQVYICKKKTKSW 466 (506)
T ss_pred eEEEEEecccccc
Confidence 8888887555443
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-27 Score=229.51 Aligned_cols=239 Identities=18% Similarity=0.309 Sum_probs=207.3
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEEeecCCe---eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC--c
Q 008717 277 FLQFS-HDGKYLASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--E 350 (556)
Q Consensus 277 ~~~~s-p~g~~las~s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~ 350 (556)
.+..+ |++++|+|||.||.|++|++..... ......+..|...|..+....+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33344 3677899999999999999875432 1235678889999999999999999999999999999999877 6
Q ss_pred EEEEEecCCCceEEEEE-ecCCCeEEEEeCCCcEEEEECCCCeE-----------EEeecccCCCeeEEEEccCCCEEEE
Q 008717 351 CLHVYEKTGVGLISCGW-FLDGGGIFAGMTDKSICLWDLDGREL-----------ESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
|..++..|...|.|+++ -++...+++|+-|+.|.+||++++.. .....++...|++++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 78889999999999999 77888999999999999999985411 1222244458999999999999999
Q ss_pred EeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
|+..+.|++||.++.+ ..+.+|...|..+..++||..++++++||+|++||+... +++.++..|...++.+.+ +
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~---~ 264 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQS---S 264 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEee---C
Confidence 9999999999999988 778899999999999999999999999999999999988 999999999999777444 7
Q ss_pred CCCcEEEEeeCCCcEEEEEcCCC
Q 008717 497 FEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
|+-..+++|+.||.|+.=|+.+.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 88899999999999999999884
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=231.53 Aligned_cols=244 Identities=16% Similarity=0.275 Sum_probs=214.7
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
|...+.+..|. +.++++++.|++|++|+..++ ......+.+|.+.|.++++..-+.++++|+.|.++++||..+|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 56788888888 567999999999999999865 23344499999999999998878999999999999999999999
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~ 430 (556)
|..++.+|.+.+.++.. ....+++|+.|.+|++|++.++........|..+|+++.++ +.++++|+.|++|++||.
T Consensus 283 C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 99999999999988876 45678889999999999999877777777577799999998 779999999999999999
Q ss_pred CCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 431 EANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 431 ~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
.+++ ..+.+|...|.++.+.+. .++++|+.|+.|++||+++..+++.++.+|..-+.. . ...+++|++++.|
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~--l---~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS--L---LLRDNFLVSSSAD 432 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc--c---ccccceeEecccc
Confidence 9988 778889999999988765 899999999999999998865789999999987544 2 3377899999999
Q ss_pred CcEEEEEcCCCceeeeecCC
Q 008717 509 SQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 509 g~v~iwd~~~~~~~~~~~~~ 528 (556)
++|++||..+++......+.
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ccEEEeecccCceeeeeccC
Confidence 99999999999998888774
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.8e-26 Score=215.92 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=210.8
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE-E-------------EEEe-cCCCCCeEEEEeCCCC
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-L-------------KHRL-SGHRKPVFTVSWSPND 329 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~-------------~~~~-~~h~~~v~~l~~s~~~ 329 (556)
...+..|.-+|.||+++|+++++++++.|++|.-|++.++.... . ...- ..|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56677899999999999999999999999999999998754220 0 0111 3788899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEE
Q 008717 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (556)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~ 409 (556)
+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++..........|...|..+..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988889999999999999999875554444445558999988
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe-CccC-c
Q 008717 410 TDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKR-A 486 (556)
Q Consensus 410 s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~-~~~~-~ 486 (556)
..-++.+-+|+.|+++++|++.... ..+.++.+.+-|++|-.+ .++++|+.+|.|.+|++... +++.+.. .|.- +
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-CceeEeeccccccC
Confidence 8888888888899999999997666 778888989999999855 57899999999999999887 7776653 2211 1
Q ss_pred --------eeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 487 --------RFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 487 --------~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+...+.. .|...++++|+.+|+|++|.+..+
T Consensus 373 ~~~~~~~~~Witsla~-i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAV-IPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CccccccccceeeeEe-cccCceEEecCCCCceEEEEecCC
Confidence 13333444 788899999999999999999887
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.1e-26 Score=199.25 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=192.3
Q ss_pred EEEEEcc--CCCE-EEEE-----eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEEC
Q 008717 276 WFLQFSH--DGKY-LASS-----SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 276 ~~~~~sp--~g~~-las~-----s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~ 346 (556)
.++.||| ++++ +|++ ...|++.|.++...+.+.....+. -.+.+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788999 3332 2232 246899999997555555555554 4577999999995 468889999999999996
Q ss_pred CC-CcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccC-CCEEEEEeCC
Q 008717 347 NS-GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDD-GKRIISICRE 422 (556)
Q Consensus 347 ~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d 422 (556)
.- ..++..++.|...|.++.|++ ++..+++++.|++|++|+... +.+.++.+ |...|+..+|+|. ++.+++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEccCC
Confidence 32 357889999999999999998 667788899999999999965 44555544 5559999999994 6789999999
Q ss_pred CeEEEEECCCCe--eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC-
Q 008717 423 AAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE- 498 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~- 498 (556)
+++++||++..- ..+..|...|.++.|+. +...+++|+.|+.|+.||+++...++..+.+|.-.+.. +.| ||.
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk--vk~-Sph~ 246 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK--VKF-SPHH 246 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE--Eec-Ccch
Confidence 999999998754 55777888999999998 55788999999999999999887889999999887544 445 664
Q ss_pred CcEEEEeeCCCcEEEEEcCCC
Q 008717 499 QAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~~ 519 (556)
..+||+++.|-+++|||...+
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred hhHhhhccccceEEecccccc
Confidence 568999999999999998844
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.9e-26 Score=205.40 Aligned_cols=267 Identities=16% Similarity=0.288 Sum_probs=226.2
Q ss_pred ceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEe
Q 008717 246 DFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (556)
Q Consensus 246 ~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 325 (556)
.++.|.+.+ ...+.++.+.||++.||.++.......+.+++.|.+.+||.++++ .++.++.+|.+.|++++|
T Consensus 127 ivssFk~~t-----~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 127 IVSSFKDGT-----VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKF 198 (481)
T ss_pred heeeecCCc-----eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEe
Confidence 445555544 124567788999999999999887788999999999999999987 677899999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECC------C------------------------------C----cEEEEEecCCCceEEE
Q 008717 326 SPNDHQLLTCGQEEAIRRWDVN------S------------------------------G----ECLHVYEKTGVGLISC 365 (556)
Q Consensus 326 s~~~~~l~s~~~dg~i~iwd~~------~------------------------------~----~~~~~~~~~~~~v~~i 365 (556)
++.+.++++++.|++-.||... . + .++..+.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999621 0 0 1345677899999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCC
Q 008717 366 GWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEE 442 (556)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~ 442 (556)
.|...|+.+++++.|.+..+||++++++.....+|....+.++-+|..+++++++.|.+.++||++... ..+.+|..
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 999999999999999999999999999988888888899999999999999999999999999999654 67889999
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
.|+++.|..+. .+++|+.|.+|++||+++...++.+++.... +..+.+ +..+..|+.--.+..|++||+....+.
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~-~NRvav---s~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSP-ANRVAV---SKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCc-cceeEe---ecCCceEEeccCCceEEEEecCCCccc
Confidence 99999999776 4889999999999999988778888876544 233333 456778888888899999999987765
Q ss_pred eee
Q 008717 523 AAA 525 (556)
Q Consensus 523 ~~~ 525 (556)
...
T Consensus 434 RlP 436 (481)
T KOG0300|consen 434 RLP 436 (481)
T ss_pred cCC
Confidence 443
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-27 Score=215.31 Aligned_cols=246 Identities=14% Similarity=0.209 Sum_probs=194.6
Q ss_pred ceeEEecccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+... .+..++..|.+.|..+++.. ..+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 3456678999999999999977 78999999999999999854 56788999999999999976 678899999988
Q ss_pred EEEECCC---------------------------C-----------cEEEEEecCCCceEEEEEecCC-CeEEEEeCCCc
Q 008717 342 RRWDVNS---------------------------G-----------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKS 382 (556)
Q Consensus 342 ~iwd~~~---------------------------~-----------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~ 382 (556)
+.|.+.. | .++..+.-....|.++.|+|-. ..|++|+.|+.
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 8887431 1 1233333345667888888854 45666779999
Q ss_pred EEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
|.+||++............ .-+.++|+|.+-.+++++.|..++.||++... ....+|.+.|.++.|||.|+-+++|
T Consensus 212 IvLyD~R~~~Pl~KVi~~m-RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTM-RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCccceeeeec-cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 9999998654433222222 67899999988889999999999999999876 6677899999999999999999999
Q ss_pred EcCCeEEEEEcCCCCcceeEE-eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 460 LINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 460 ~~dg~I~lwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+.|.+|+||.+..+ ..-..+ ....+.+++ +.| |.|.+||++||+|+.|++|.-..
T Consensus 291 syDksIRIf~~~~~-~SRdiYhtkRMq~V~~--Vk~-S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHG-HSRDIYHTKRMQHVFC--VKY-SMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccceEEEeecCCC-cchhhhhHhhhheeeE--EEE-eccccEEEecCCCcceeeeecch
Confidence 99999999999876 332232 112334333 556 88999999999999999997653
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=215.48 Aligned_cols=270 Identities=21% Similarity=0.277 Sum_probs=204.0
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEec-ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee---------E
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV---------S 308 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~-~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~---------~ 308 (556)
++++.|..+.+|+-....... +..+.|. .....|.+++|++.|..|++.+....++|+|-..-... .
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~---~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~ 259 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASM---RSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR 259 (641)
T ss_pred eeccccceEEEEecccccccc---hhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh
Confidence 456667777777644332211 1123333 34457999999999999998888889999997632111 1
Q ss_pred EEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCc-EEEEEe-----cCCCceEEEEEecCCCeEEEEeCCC
Q 008717 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE-CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDK 381 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~dg 381 (556)
-...-++|...++|.+|+|+. ..+++++.||+++|||+...+ ....++ +...++++|+|++||+.|++|+.||
T Consensus 260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 123456899999999999965 689999999999999997653 333443 2356789999999999999999999
Q ss_pred cEEEEECCC---CeEEEeecccCC--CeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeee--ecCCceEEEEEcC
Q 008717 382 SICLWDLDG---RELESWKGQKTL--RISDMAITDDGKRIISICREAAILLLDREANF---ERWI--EEEEVITSFSLSK 451 (556)
Q Consensus 382 ~i~vwd~~~---~~~~~~~~~~~~--~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~--~~~~~i~~v~~sp 451 (556)
.|.+|+..+ +....+...|.. .|+|++|++||++|++-+.|+++++||++..+ .... ....+-+.++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 999999864 233444455544 79999999999999999999999999999876 2222 2345578899999
Q ss_pred CCCEEEEEEc------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 452 DNKYLLVNLI------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 452 ~~~~l~~~~~------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+.++|++|+. .|.+.+||..+. ..+.++.-.... ++++.| +|.=+.|+.|+.||+++||=
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~aS--vv~~~W-hpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDISTAS--VVRCLW-HPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccce-eeEEEecCCCce--EEEEee-cchhhheeeecCCCceEEEE
Confidence 9999999864 467999998887 777777655443 455666 99988899999999999983
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.6e-26 Score=215.82 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=205.6
Q ss_pred cCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 271 HSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 271 h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
..+.|.+++|||... -+|+.+ .-.+.||+..+. ...+++......|.+++|-.||+++++|+..|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 456899999999543 344443 347999998764 344556667788999999999999999999999999998877
Q ss_pred cEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EEEEEeCCCeEEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAILL 427 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i 427 (556)
..++.+..|+.++..+.|+|+ +..+++|+.|+.+++||+.+..+......|...|.|.+|+|... .+++|+.||.|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 778899999999999999995 55677788899999999998887656666777999999999654 7899999999999
Q ss_pred EECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
||.+... .....|..+|.++.+-|.|..+++++ .+.+++||+.++.+.+..+..|...++++ ++ ..++..|++|
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL--~l-~s~~~rLlS~ 256 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCL--RL-ASDSTRLLSG 256 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEE--Ee-ecCCceEeec
Confidence 9999874 67778999999999999999999988 67899999997767777777798887774 44 4488999999
Q ss_pred eCCCcEEEEEcCCCceee
Q 008717 506 SEDSQNVPEILLSESVAA 523 (556)
Q Consensus 506 s~dg~v~iwd~~~~~~~~ 523 (556)
+-|+.|++||+.+-+++.
T Consensus 257 sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ccccceEEEEccceEEEE
Confidence 999999999977766544
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2e-25 Score=197.84 Aligned_cols=232 Identities=22% Similarity=0.265 Sum_probs=190.2
Q ss_pred ceeecCCCCceeeecCCCCCCCC-CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNR-IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
..|+-.+|..++...|+....|. ...+.+.++.||.+.||||+.+.+.++++||+.|.++++||+.++.+ +..+.
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~---la~~k- 91 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ---LATWK- 91 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE---EEEee-
Confidence 33444444444555555444443 36889999999999999999999999999999999999999998843 34443
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECC-------CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcE
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVN-------SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 383 (556)
...+|..+.|+++|++++.+..+ +.|.++|++ ..++...+..+.+.++.+.|.|-++.|++|..||.|
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i 171 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI 171 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence 46789999999999998887653 679999997 455678888888999999999999999999999999
Q ss_pred EEEECCCC-eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----------------------------
Q 008717 384 CLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---------------------------- 434 (556)
Q Consensus 384 ~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---------------------------- 434 (556)
..||++++ ++......|...|+++.++||..++++++.|.+-++||..+-.
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence 99999874 5566656666799999999999999999999999999986431
Q ss_pred -----------------------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 435 -----------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 435 -----------------------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
.+..+|-++|++++|+|+|+..++|++||.|++.....
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11235778999999999999999999999999987654
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5e-26 Score=199.63 Aligned_cols=257 Identities=19% Similarity=0.251 Sum_probs=218.1
Q ss_pred eEEecccCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 265 LQILEAHSDEVWFLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp---~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
-.+..||..+|..++||| +|-+|++++.|+.-.+-+=+++ ..+-+|.+|.++|++.+...|-..-++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 345679999999999997 8889999999999887776665 4668899999999999999988899999999999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
++||.-+|..+..|+ |..-|..++|+.|.++|++|+.+..+++||++.- ........+.+.|..+.|....+.|++++
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 999999999999886 7778999999999999999999999999999742 22333345556999999999999999999
Q ss_pred CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCC
Q 008717 421 REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 421 ~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (556)
.|++|++||.+++. ........+|+++.++++|++|.++. .+.|.+||..+- .+++.++.... +..+..+|+.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~n----V~SASL~P~k 236 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCN----VESASLHPKK 236 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCccc----cccccccCCC
Confidence 99999999999999 77778899999999999999877665 678999999987 77887765543 3344448999
Q ss_pred cEEEEeeCCCcEEEEEcCCCceeeee-cCCCcc
Q 008717 500 AFIASGSEDSQNVPEILLSESVAAAA-SSLDNF 531 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~ 531 (556)
.++++|++|..++.||+.++.-+... .++.+.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp 269 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP 269 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence 99999999999999999998876653 444443
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.1e-25 Score=208.60 Aligned_cols=246 Identities=15% Similarity=0.212 Sum_probs=199.7
Q ss_pred ccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCe-------eEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCc
Q 008717 270 AHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ-------VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEA 340 (556)
Q Consensus 270 ~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 340 (556)
.|.++|+.+..-| +...+|+++..+.|.|||..+... ..+..++.+|.+.-++++|++.. -.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5999999999999 455777888999999999975322 22334788999988899999854 58999999999
Q ss_pred EEEEECCCCc-------EEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECC--CCeEEEeecccCCCeeEEEEc
Q 008717 341 IRRWDVNSGE-------CLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAIT 410 (556)
Q Consensus 341 i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~s 410 (556)
|++||+.... ....+.+|...|..++|++ +...|.+++.|+.+.|||++ +.+.......|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999996532 3567889999999999999 66788899999999999999 555556666777799999999
Q ss_pred cCC-CEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC------------
Q 008717 411 DDG-KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD------------ 473 (556)
Q Consensus 411 ~~g-~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~------------ 473 (556)
|-+ ..||+|+.|++|.+||+++.. ..+.+|...|.++.|||+. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 965 468889999999999999877 7788999999999999965 67889999999999998542
Q ss_pred -CcceeEEeCccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCC
Q 008717 474 -PKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLS 518 (556)
Q Consensus 474 -~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~ 518 (556)
.+++..-.||...+.- ..| +|+.. .|+|.++|+.+.||....
T Consensus 362 ppEllF~HgGH~~kV~D--fsW-np~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSD--FSW-NPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCccccccc--ccC-CCCCCeEEEEecCCceEEEeeccc
Confidence 1233455677777544 455 66655 578899999999998763
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-23 Score=188.42 Aligned_cols=249 Identities=20% Similarity=0.304 Sum_probs=202.2
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeC--CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
..+.++++..++-.|..++|......++.++. |.+|+..++.++ +.++.+.||...|..++.+|-++.+++++.|
T Consensus 45 ~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D 121 (311)
T KOG1446|consen 45 SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD 121 (311)
T ss_pred CCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---ceEEEcCCCCceEEEEEecCCCCeEEecccC
Confidence 46778888888889999999988887777776 889999999976 6779999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---CeEEEeec--ccCCCeeEEEEccCC
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKG--QKTLRISDMAITDDG 413 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~--~~~~~v~~v~~s~~g 413 (556)
++|++||++..++...+.....+ .++|.|+|-.+|++.....|++||++. +....+.. ......+.+.|+|||
T Consensus 122 ~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG 199 (311)
T ss_pred CeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC
Confidence 99999999988888777655544 478999999999999888999999974 33333332 233478999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe--eeeeecCC---ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-ccCce
Q 008717 414 KRIISICREAAILLLDREANF--ERWIEEEE---VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRAR 487 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~---~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~-~~~~~ 487 (556)
+.++.++..+.+++.|.-++. ..+..+.. -.-+.+|+||++++++|+.||+|++|+++++ ..+..+.+ +..++
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~~~~~~ 278 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGPNGGPV 278 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCCCCCCc
Confidence 999999999999999998887 33333322 2257889999999999999999999999999 88888888 56665
Q ss_pred eEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 488 FVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 488 ~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+++ | +|.-. ..++.+..+.+|-....+
T Consensus 279 ~~~~--f-nP~~~--mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 279 SCVR--F-NPRYA--MFVSASSNLVFWLPDEDA 306 (311)
T ss_pred cccc--c-CCcee--eeeecCceEEEEeccccc
Confidence 5543 4 66544 445556789999665433
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=5.6e-25 Score=198.61 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=200.2
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
..++++-.|.++|+++.|+|....|++|+.|++|+++|+......+..+.+ ....+|.++.|+|.|.+|+.|....+++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~r 241 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLR 241 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCcee
Confidence 567889999999999999999999999999999999999753221222222 3457899999999999999999999999
Q ss_pred EEECCCCcEEEEEe---cCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEeeccc-CCCeeEEEEccCCCEEE
Q 008717 343 RWDVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQK-TLRISDMAITDDGKRII 417 (556)
Q Consensus 343 iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~v~~s~~g~~l~ 417 (556)
+||++|-+|...-. .|.+.|+++.+++.|+..++++.||.|++||=- ++.+..+...| ...|.+..|+.+|++++
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred EEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 99999988765543 578899999999999999999999999999964 44455554444 34799999999999999
Q ss_pred EEeCCCeEEEEECCCCe--eeeeec-----CCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCcceeEEeCccCceeE
Q 008717 418 SICREAAILLLDREANF--ERWIEE-----EEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFV 489 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~~~~~-----~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~~~~~~~~~~~~~~~~~ 489 (556)
+.+.|..+++|.+.+++ ..+.+. ..--+...|+....|++.-.+ .+.+.-||.++..+.-..--+|.+.+
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~-- 399 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV-- 399 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc--
Confidence 99999999999999998 333332 122345668878888877654 46799999999833333345788874
Q ss_pred EEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 490 IRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
++..-+|.+..+++++.|-..++|--+
T Consensus 400 -R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 400 -RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -eEEEeCCCCCceeeecccceeeeeeec
Confidence 344449999999999999999999543
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.3e-24 Score=224.66 Aligned_cols=251 Identities=15% Similarity=0.165 Sum_probs=205.2
Q ss_pred cCCcEEEEEEccCCCEEEEEe--CCCcEEEEEeecC--------C-eeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSS--KDQSAIIWEVKED--------G-QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s--~dg~i~iwd~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
+...|.+++.+|||..+|||+ .|+.+.||+...- . -.+.+.+...|.+.|.|+.|+|||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345799999999999999999 9999999997521 0 1234556678999999999999999999999999
Q ss_pred cEEEEECCC------------------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC
Q 008717 340 AIRRWDVNS------------------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (556)
Q Consensus 340 ~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 401 (556)
.|.||.... -+++..+.+|...|..++|+|++.++++++.|++|.+||.++.+.......|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999762 12677888999999999999999999999999999999999877766666777
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-e-eeee------cCCceEEEEEcCCCCEEEEEEc----CCeEEEEE
Q 008717 402 LRISDMAITDDGKRIISICREAAILLLDREANF-E-RWIE------EEEVITSFSLSKDNKYLLVNLI----NQEIHLWS 469 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~-~~~~------~~~~i~~v~~sp~~~~l~~~~~----dg~I~lwd 469 (556)
+.|-.+.|+|-|++|++-+.|++|++|++.+.. . .... .......+.|||||++|++... -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 799999999999999999999999999977654 2 2222 2345788999999999998632 34688998
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCC-----Cc------------EEEEeeCCCcEEEEEcCCCceeeee
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFE-----QA------------FIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
-.+. +.-..+.||..++.++ .| +|. .+ .+|+||.|++|-||.....++...+
T Consensus 252 R~tW-k~~~~LvGH~~p~evv--rF-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 252 RGTW-KVDKDLVGHSAPVEVV--RF-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred cCCc-eeeeeeecCCCceEEE--Ee-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 7665 7788999999997774 34 441 11 6889999999999998776665443
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-25 Score=224.60 Aligned_cols=243 Identities=11% Similarity=0.191 Sum_probs=203.5
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCCcE
Q 008717 274 EVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 274 ~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
.+..|.|.. +.++|||++..|.|.+||+......+.+..|..|...+.++.|++ ...+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355667775 677999999999999999986333355667899999999999998 457899999999999999999998
Q ss_pred EEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 352 LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 352 ~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
..++.+....|..++|+| .+..|+++...|.+.+||++. .........|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 889988889999999999 688899999999999999984 334444556677999999999999999999999999999
Q ss_pred CCCCe---eeeeecCCceEEEEEcCCCCE-EEEEEc--CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 430 REANF---ERWIEEEEVITSFSLSKDNKY-LLVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~v~~sp~~~~-l~~~~~--dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
..+.+ ...+....++.++.|-|...+ |++++. |-.|+|||++...-+..++..|...+.. ++|-+.|...+.
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~--i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG--IAWDSGDRINLW 326 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc--eeccCCCceeeE
Confidence 99766 566677889999999998765 555543 6789999998876778899999998766 556556777899
Q ss_pred EeeCCCcEEEEEcCC
Q 008717 504 SGSEDSQNVPEILLS 518 (556)
Q Consensus 504 sgs~dg~v~iwd~~~ 518 (556)
+++.||+|..-.+++
T Consensus 327 s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKN 341 (839)
T ss_pred eecCccHHHHhhhhc
Confidence 999999887655544
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.7e-23 Score=177.37 Aligned_cols=251 Identities=16% Similarity=0.207 Sum_probs=195.4
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC------------CeeEEEEEecCCCCCeEEEEeCCCCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED------------GQVSLKHRLSGHRKPVFTVSWSPNDH 330 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~------------~~~~~~~~~~~h~~~v~~l~~s~~~~ 330 (556)
..+.+++ ....|.+++|+|.|.+.|.|++..+++|-....- ......+.-+.|.+.|+|.+|+|+|.
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 3444444 5568999999999999999999999998754321 00123344567999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcE-----EEEEecCCCceEEEEEecC----CCeEEEEe-CCCcEEEEECCCCeEEEeeccc
Q 008717 331 QLLTCGQEEAIRRWDVNSGEC-----LHVYEKTGVGLISCGWFLD----GGGIFAGM-TDKSICLWDLDGRELESWKGQK 400 (556)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~~~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~ 400 (556)
+|++|+.|.+|++.-++...+ -..+..|.+.|..++|..+ +..+++++ .|..|++-|...++-..-...|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999999999987764433 2356778999999999753 44566654 4667888888655444444455
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeee-----e---cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 401 TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-----E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 401 ~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~-----~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
.+.|.++ ++-+|-.+++|+.|.+|++||++-.. .... . ....|.++++.|.|++|++|-.|....+||++
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 5566664 45578899999999999999998766 2221 1 23679999999999999999999999999999
Q ss_pred CCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+ .+++.|..|...+.+ +.| +|...|+++++.|..|++-|+...
T Consensus 262 g~-r~iq~f~phsadir~--vrf-sp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 262 GG-RMIQRFHPHSADIRC--VRF-SPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CC-ceeeeeCCCccceeE--EEe-CCCceEEEEecccceEEEeecccc
Confidence 98 999999999998554 334 999999999999999999998754
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=194.63 Aligned_cols=263 Identities=19% Similarity=0.296 Sum_probs=216.0
Q ss_pred cCCCCCCCCC-CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEe------ecC-------------------
Q 008717 251 SDHQCGRNRI-PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV------KED------------------- 304 (556)
Q Consensus 251 ~d~~~~~~~~-~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~------~~~------------------- 304 (556)
-|++..+|.+ ...++..+.||.+.|+++.|++.+.++++++.|++..||.. ...
T Consensus 168 ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 168 ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 3454444444 36899999999999999999999999999999999999982 110
Q ss_pred -----------Ce-eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC
Q 008717 305 -----------GQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (556)
Q Consensus 305 -----------~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 372 (556)
.. -.++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+++|+.+..+.+|....+.++-+|..+
T Consensus 248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr 327 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR 327 (481)
T ss_pred cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce
Confidence 00 134567889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEE
Q 008717 373 GIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSL 449 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~ 449 (556)
.+++++.|.+.++||++. -.....+.+|...|+++.|..+. .+++|+.|.+|++||+++.. ...+....+++.+++
T Consensus 328 LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvav 406 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAV 406 (481)
T ss_pred EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEe
Confidence 999999999999999984 23334455555699999998765 58999999999999999987 667778899999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCcceeE-----EeCccCceeEEEEeecCCCC--cEEEEeeCCCcEEEEEcCCC
Q 008717 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSR-----YKGHKRARFVIRSCFGGFEQ--AFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 450 sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~-----~~~~~~~~~~i~~~~~s~~~--~~l~sgs~dg~v~iwd~~~~ 519 (556)
+..+..|+.--.+..|++||+... .+.. -++|...+. ++.|..+. .-|++++.|..+.-|++...
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~--RlaRlPrtsRqgHrRMV~---c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGN--RLARLPRTSRQGHRRMVT---CCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCC--ccccCCcccccccceeee---eeeccccCcccccccccccceeeeeEeccc
Confidence 999999999998899999999764 3333 346666543 33334433 23789999999999998754
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.7e-24 Score=204.08 Aligned_cols=231 Identities=19% Similarity=0.299 Sum_probs=190.9
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
++|...|.+++.|+||+|||+|+.|..|.||+..+. ..++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999876 56677999999999999998888999999999999999998
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
...+.++-+|++.|.++....-++.+-+|+.|+++++|++.... +.++..+.+.+.|++|-.+ ..+++|+.+|.|.+|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEe
Confidence 88889999999999999888777777778899999999995433 3333444558999999765 579999999999999
Q ss_pred ECCCCee---eeeec-----------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEee
Q 008717 429 DREANFE---RWIEE-----------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (556)
Q Consensus 429 d~~~~~~---~~~~~-----------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (556)
++.+.+. ....| +.+|++++..|...++++|+.+|.|++|-+..+...+..+..-.-..++..++|
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF 433 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEE
Confidence 9988761 11111 238999999999999999999999999999887455555444444444444666
Q ss_pred cCCCCcEEEEe
Q 008717 495 GGFEQAFIASG 505 (556)
Q Consensus 495 ~s~~~~~l~sg 505 (556)
+++|+.|++|
T Consensus 434 -~~sgk~ivag 443 (479)
T KOG0299|consen 434 -SNSGKRIVAG 443 (479)
T ss_pred -ccCCCEEEEe
Confidence 8899966665
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5e-24 Score=193.01 Aligned_cols=265 Identities=18% Similarity=0.260 Sum_probs=198.3
Q ss_pred CCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
..|.+.-.+++... -.|+.|++.|.+||+|..||.|.|||+.+- ...+.+.+|..+|.+++||+||+.|+|++.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 45556666665333 789999999999999999999999999875 4567789999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeecccC----CCeeEEEEccCC
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT----LRISDMAITDDG 413 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~v~~s~~g 413 (556)
..|.+||+..|.+++.+. ..++|+.+.|+|. .+.++++-.+..-.+-++....-..+..... ....+..|++.|
T Consensus 87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 999999999999988886 5678999999994 3444444444445555554322222221111 123344689999
Q ss_pred CEEEEEeCCCeEEEEECCCCe--eeeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC--------CcceeEEeC
Q 008717 414 KRIISICREAAILLLDREANF--ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD--------PKLVSRYKG 482 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~--~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~--------~~~~~~~~~ 482 (556)
+++++|...|.+.+||..+.+ ..+.- ....|.++.++..|++|+..+.|..|+.|+++.- .++.++++.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 999999999999999999987 22222 2467899999999999999999999999998631 011222222
Q ss_pred ccCceeEEEEeecCCCCcEEEEeeC-CCcEEEEEcCCCceeeeecCCCc
Q 008717 483 HKRARFVIRSCFGGFEQAFIASGSE-DSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
-.+...--.+|| +.+|.|++.|+. ...+|||.-..|.++..+.+..|
T Consensus 246 vVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 246 VVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred HHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence 111111123666 889999987764 45799999999999998887775
No 100
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-23 Score=183.77 Aligned_cols=232 Identities=14% Similarity=0.196 Sum_probs=190.3
Q ss_pred EecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
...+|.+.|-.++|+| ....+++++.|.+|++||+..+ ++....... +.-..+.|+|+|.++++++.|..|...|
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~---k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG---KCTARIETK-GENINITWSPDGEYIAVGNKDDRITFID 134 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC---cEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEE
Confidence 4578999999999999 6678999999999999999976 444444433 3334689999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
.++.+.+...+ ....+..++|+-++++|+.....|.|.|.....-+.......|.....|+.|+|+|+++++|+.|..+
T Consensus 135 ~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 135 ARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred ecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 99888776665 34457788999888888888888999998876544333344444589999999999999999999999
Q ss_pred EEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
.+||+.... ..+..+.-+|..++||.||++||++++|..|-|=+++++ ..+..+. +.++.+. +.| +|...+||
T Consensus 214 SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG-d~~~eI~-~~~~t~t--VAW-HPk~~LLA 288 (313)
T KOG1407|consen 214 SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG-DRVWEIP-CEGPTFT--VAW-HPKRPLLA 288 (313)
T ss_pred eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC-CeEEEee-ccCCcee--EEe-cCCCceee
Confidence 999998876 566678999999999999999999999999999999999 7777775 3444333 566 99999998
Q ss_pred EeeCC
Q 008717 504 SGSED 508 (556)
Q Consensus 504 sgs~d 508 (556)
-+..|
T Consensus 289 yA~dd 293 (313)
T KOG1407|consen 289 YACDD 293 (313)
T ss_pred EEecC
Confidence 77765
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=219.73 Aligned_cols=217 Identities=17% Similarity=0.243 Sum_probs=176.3
Q ss_pred EEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC--------------------------------C------
Q 008717 309 LKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--------------------------------G------ 349 (556)
Q Consensus 309 ~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------ 349 (556)
..+.+. .|.++|+++.||+||+|||+||.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334555 8999999999999999999999999999998754 0
Q ss_pred ----------------------cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEE
Q 008717 350 ----------------------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (556)
Q Consensus 350 ----------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 407 (556)
++++.|.+|.+.|.++.|+. .++|++++.|.+|++|++..+.....+.|.. -|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-fVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHND-FVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCC-eeEEE
Confidence 01223557899999999994 5799999999999999998877777776665 89999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-
Q 008717 408 AITD-DGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK- 484 (556)
Q Consensus 408 ~~s~-~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~- 484 (556)
+|+| |.++|++|+-|+.|+||++...+ ........-|++++|+|||++.++|+.+|.+++|++... +++..+.-+.
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeec
Confidence 9999 67899999999999999999988 556666788999999999999999999999999999877 6665543221
Q ss_pred -------CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCc
Q 008717 485 -------RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 485 -------~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
..++.+.+....++ .|++.+.|..|+|+|.++..++....+..+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRN 545 (712)
T ss_pred cCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhccccc
Confidence 14666555554444 577788999999999987777665554443
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=191.09 Aligned_cols=243 Identities=18% Similarity=0.281 Sum_probs=184.3
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec------------------------------------CCeeE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE------------------------------------DGQVS 308 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~------------------------------------~~~~~ 308 (556)
+.+|++|.+.|++++|+.||++|||++.|++|+||++.. ++.+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 456899999999999999999999999999999999863 00000
Q ss_pred EEEE--------------------ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEe
Q 008717 309 LKHR--------------------LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF 368 (556)
Q Consensus 309 ~~~~--------------------~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 368 (556)
.... -..|.-.|..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 0000 01233445556666678899999999999999998 99999998887778889999
Q ss_pred cCCCeEEEEeCCCcEEEEECC---CC------eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-----
Q 008717 369 LDGGGIFAGMTDKSICLWDLD---GR------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----- 434 (556)
Q Consensus 369 ~~~~~l~~~~~dg~i~vwd~~---~~------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----- 434 (556)
|+|+++++++..-.|++|.+- .+ .+..+.+ |...|..++|+++...+++.+.||++++||..-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999999999999972 22 2233444 44599999999999999999999999999975321
Q ss_pred --------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE-eCccCceeEEEEeecCCCCcEEEEe
Q 008717 435 --------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 435 --------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
.......+....++++|+|+.|++.. ...++++..+++ +....+ ..|...+.. +.| +++|++++++
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g-~~~~~~e~~h~~~Is~--is~-~~~g~~~atc 391 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDG-KDYPELEDIHSTTISS--ISY-SSDGKYIATC 391 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccC-ccchhHHHhhcCceee--EEe-cCCCcEEeee
Confidence 11112234455899999999888766 667999999987 444444 567776444 344 9999999988
Q ss_pred eCCCcEEEEE
Q 008717 506 SEDSQNVPEI 515 (556)
Q Consensus 506 s~dg~v~iwd 515 (556)
+ |..+++..
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 7 45666654
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-24 Score=212.60 Aligned_cols=279 Identities=20% Similarity=0.245 Sum_probs=224.7
Q ss_pred ccccceeecCCCCceeeecCCCCCCCCCCcc-eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE
Q 008717 233 QRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQ-TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH 311 (556)
Q Consensus 233 q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 311 (556)
+....+|+++.|+.+.+|....- ...|.. .+..++.|.+.|+.++...+|+.|+++|.|-+|++|+...++ .-+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d--~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQD--SNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccc--cCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHh
Confidence 34456899999999999875542 233333 488899999999999999999999999999999999998765 34667
Q ss_pred EecCCCCCeEEEEe-CCCCCEEEEEeCCCcEEEEECCCCc--EEEEE--------e-cCCCceEEEEEecCCCeEEEEeC
Q 008717 312 RLSGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGE--CLHVY--------E-KTGVGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 312 ~~~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~--------~-~~~~~v~~i~~~~~~~~l~~~~~ 379 (556)
++..|...|.|+++ .++...+|+||.|+.|.+||++++. .+..+ . ++..+|++++.++.|..|++|+.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 88999999999999 8899999999999999999999872 22222 2 66788999999999999999999
Q ss_pred CCcEEEEECCCC-eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEE
Q 008717 380 DKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYL 456 (556)
Q Consensus 380 dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l 456 (556)
.+.+++||.+++ ++..+. +|...|.++..++||..+++++.||+|++||+...+ .++..|...+.++..+|+-.++
T Consensus 192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~v 270 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHV 270 (735)
T ss_pred ccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceE
Confidence 999999999874 455555 555599999999999999999999999999999887 7788899999999999999999
Q ss_pred EEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
++|+.||.|..=|+++..+....++ ...++.. ... +.+.+-+.+++.|+.|.-|...-.
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~--l~~-~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLK--LHL-HEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EecCCCCcEEecccCCchhheEeec-CCCchhh--hhh-ccccCCceeeeccccceecCCccc
Confidence 9999999999999998534433333 2222222 112 222333467788999999976543
No 104
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.3e-23 Score=185.88 Aligned_cols=256 Identities=18% Similarity=0.233 Sum_probs=199.9
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
..+.|..+.|+|.+..|+.++.||++++||+... .... .-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhhh-heecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 4678999999999999999999999999999864 2222 335899999999986 6789999999999999999887
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~ 430 (556)
. ..+..|..++.|+.+.+....+++|+.|++|++||.+............ .|.++... |+.|++|+.|..|.+||+
T Consensus 87 ~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 87 E-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred c-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeecCceEEEEEc
Confidence 5 4556789999999999988999999999999999998644333333332 78888765 668999999999999999
Q ss_pred CCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---CcceeEEeCccC------ceeEEEEeecCC
Q 008717 431 EANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKR------ARFVIRSCFGGF 497 (556)
Q Consensus 431 ~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~---~~~~~~~~~~~~------~~~~i~~~~~s~ 497 (556)
++.. .+.......+.|+++-|++.-.++++-||.|.+=.+... .+.-..|+.|.. -++.+....++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 9877 223345667899999998888999999999877655433 123345566642 234444444499
Q ss_pred CCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccccc
Q 008717 498 EQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVSSY 535 (556)
Q Consensus 498 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 535 (556)
-...+|||+.||.|.+||+.+.+.+......++.+++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl 280 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL 280 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE
Confidence 88999999999999999999988776666555555433
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.9e-23 Score=207.34 Aligned_cols=243 Identities=16% Similarity=0.247 Sum_probs=206.2
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE-EEeCC-CCCEEEEEeCCCc
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSP-NDHQLLTCGQEEA 340 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~ 340 (556)
+..+.+.||+..|..+++.++. .++++|.||++++|+-.. +++...+.+.+|.+-|.+ +++-+ ++-.+++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 4567899999999999877554 799999999999999874 344455677888888877 88875 4556999999999
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
|.+|...+..+...+++|...|+++....++. +++|+.|.++++|-... .... ...|...|++++.-|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-l~~~-l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-LVYS-LQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-hhcc-cCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999998777776 99999999999997642 1222 44555699999999988 899999
Q ss_pred CCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 421 REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 421 ~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
.|.+|++|.-.+....+.+|...|..+++-+++. +++++.||.|++|++ ++ +++.++.+|..-+|++.. .+++.
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g-e~l~~~~ghtn~vYsis~---~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG-EVLLEMHGHTNFVYSISM---ALSDG 232 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC-ceeeeeeccceEEEEEEe---cCCCC
Confidence 9999999998665588889999999999998764 778999999999999 55 799999999999999763 45778
Q ss_pred EEEEeeCCCcEEEEEcC
Q 008717 501 FIASGSEDSQNVPEILL 517 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~ 517 (556)
.|+++++|++++||+..
T Consensus 233 ~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEecCCceEEEeecC
Confidence 99999999999999877
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=5.3e-24 Score=203.57 Aligned_cols=263 Identities=16% Similarity=0.266 Sum_probs=211.5
Q ss_pred CceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE
Q 008717 245 SDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324 (556)
Q Consensus 245 ~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 324 (556)
+.+.+|+.... .+..|...+-.+ ...+.|.+|...|||+.|++|+.-.++.|||+.... ......+....-.+.+++
T Consensus 440 gcVKVWdis~p-g~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa 516 (705)
T KOG0639|consen 440 GCVKVWDISQP-GNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALA 516 (705)
T ss_pred CeEEEeeccCC-CCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhh
Confidence 45666654443 233333333333 245689999999999999999999999999998542 234444554455688899
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCe
Q 008717 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI 404 (556)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 404 (556)
.+||.+..++|..||.|.|||+.+...++.|++|...+.||..++||..|.+|+-|.+|+.||++.+......... +.|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999865433333333 389
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 405 SDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
.++.++|++.++++|-.++.+.+....... ..+..|..-|.++.|.+.|+++++.+.|+.+..|...-+ ..+...+..
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-asiFqskE~ 674 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKES 674 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc-cceeecccc
Confidence 999999999999999999999999887776 777788999999999999999999999999999998877 444444433
Q ss_pred cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 484 KRARFVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
..|. +|-.+.|.+||++||.|..-.+|.+
T Consensus 675 -SsVl---sCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 -SSVL---SCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -Ccce---eeeeccCceEEEecCCCcceEEEEE
Confidence 3333 3333779999999999988888765
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=4e-23 Score=205.14 Aligned_cols=263 Identities=15% Similarity=0.271 Sum_probs=213.5
Q ss_pred cccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEE-EEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEE
Q 008717 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWF-LQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKH 311 (556)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~-~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~ 311 (556)
...|+.+++.+..+++|..+.-. --....+.+|.+-|.+ +++-+ ++-.|++|+.|.+|.+|..... .+..
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~-----~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~~ 95 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQ-----YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPLY 95 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcc-----cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cchh
Confidence 34467777778788888654311 1223567788888887 88876 5556999999999999999755 5778
Q ss_pred EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 008717 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (556)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~ 391 (556)
.+.+|...|.|+....++. +++||.|.++++|.. +++...+++|+..|++++..|++ .+++|+.|.+|++|.- +.
T Consensus 96 ~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~ 170 (745)
T KOG0301|consen 96 TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GT 170 (745)
T ss_pred hhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cc
Confidence 9999999999999887777 999999999999985 67777899999999999999887 8999999999999985 34
Q ss_pred eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 392 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
.+..+.+ |...|+.+++-+++. +++++.||.|++|++.... ....+|..-+.+++..+++..++++++|++++||+.
T Consensus 171 ~l~tf~g-HtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 171 LLKTFSG-HTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred hhhhhcc-chhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 4444444 556999999998754 7888999999999996666 888999999999998888999999999999999997
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
. .+.+.+.-....++. +++ -++|. |++|+.||.||||....
T Consensus 249 ~---e~~q~I~lPttsiWs--a~~-L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 249 D---ECVQVITLPTTSIWS--AKV-LLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C---ceEEEEecCccceEE--EEE-eeCCC-EEEeccCceEEEEEecc
Confidence 5 567777766656666 444 34665 67899999999998763
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-22 Score=182.97 Aligned_cols=245 Identities=15% Similarity=0.249 Sum_probs=192.7
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee-cCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEE
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK-EDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd 345 (556)
.+|.+-|.++.|.+-|+++|||+.|++++|||.. ..+...+......|.+.|..+.|.+ =|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999954 4456778888999999999999976 479999999999999997
Q ss_pred CCC------C---cEEEEEecCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCC-CeEEEee------------cccC
Q 008717 346 VNS------G---ECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-RELESWK------------GQKT 401 (556)
Q Consensus 346 ~~~------~---~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~------------~~~~ 401 (556)
-.. + ....++....+.|+++.|.| -|-.+++++.||.++||+.-. ..+..+. ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1 23456667788999999999 578899999999999998732 2222221 1233
Q ss_pred CCeeEEEEccC---CCEEEEEeCC-----CeEEEEECCCCe------eeeeecCCceEEEEEcCC----CCEEEEEEcCC
Q 008717 402 LRISDMAITDD---GKRIISICRE-----AAILLLDREANF------ERWIEEEEVITSFSLSKD----NKYLLVNLINQ 463 (556)
Q Consensus 402 ~~v~~v~~s~~---g~~l~~~~~d-----~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~----~~~l~~~~~dg 463 (556)
.+..|+.|+|. ..+|++|+.+ +.+.||...... ..+.+|..+|+.++|.|+ -..||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 36789999974 3567777765 478888766543 345578999999999995 35799999999
Q ss_pred eEEEEEcCCC-------------------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 464 EIHLWSIESD-------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 464 ~I~lwd~~~~-------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
|+||++... -+.+..+.+|...++. +.| .-.|..|++.+.||+|++|...
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~w-NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR--VRW-NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE--EEE-eeeeeEEeecCCCceeeehhhh
Confidence 999998731 0235557788888666 556 7789999999999999999543
No 109
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.8e-23 Score=197.40 Aligned_cols=237 Identities=16% Similarity=0.301 Sum_probs=187.4
Q ss_pred ccceeecCCCCceeeecCCCCCCCCC---CcceeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCe----
Q 008717 235 DSCLFHNTSDSDFSLYSDHQCGRNRI---PSQTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ---- 306 (556)
Q Consensus 235 ~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~---- 306 (556)
..++...+....+.+|+-..-..... ...+-.+|.||.++-..++|++. .-+|++|+.|++|.+||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 34444556666777765433221111 34566689999999999999994 34799999999999999985443
Q ss_pred eEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECC--CCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCc
Q 008717 307 VSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKS 382 (556)
Q Consensus 307 ~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~ 382 (556)
..+...+.+|...|..++|++ +...+++++.|+.+.|||++ +.++.....+|.+.|+|++|+| ++..|++|+.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 456678899999999999999 55788999999999999999 5667778889999999999999 6777889999999
Q ss_pred EEEEECCC--CeEEEeecccCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCe----------------eeeeecCCc
Q 008717 383 ICLWDLDG--RELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLDREANF----------------ERWIEEEEV 443 (556)
Q Consensus 383 i~vwd~~~--~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~----------------~~~~~~~~~ 443 (556)
|++||+++ ..+..+..+ ...|.++.|+|... .|++++.|+.+.+||+..-. ...-+|...
T Consensus 297 V~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred EEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc
Confidence 99999985 444555444 45999999999764 68888999999999987532 122367889
Q ss_pred eEEEEEcCCCCE-EEEEEcCCeEEEEEcCC
Q 008717 444 ITSFSLSKDNKY-LLVNLINQEIHLWSIES 472 (556)
Q Consensus 444 i~~v~~sp~~~~-l~~~~~dg~I~lwd~~~ 472 (556)
|..+.|+|+..+ |++.+.|+.++||.+..
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999999998866 66778899999999864
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2.2e-23 Score=206.96 Aligned_cols=277 Identities=18% Similarity=0.240 Sum_probs=220.8
Q ss_pred ccceeecCCCCceeeecCCCCCCCCC------Cc------------------------ceeEEecccCCcEEEEEEccCC
Q 008717 235 DSCLFHNTSDSDFSLYSDHQCGRNRI------PS------------------------QTLQILEAHSDEVWFLQFSHDG 284 (556)
Q Consensus 235 ~~~~~~~~~~~~~~~~~d~~~~~~~~------~~------------------------~~~~~l~~h~~~V~~~~~sp~g 284 (556)
..|....+.|..|.+|+...|...+. .. +.....-+....+.+++.||+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 44666778889999998776543211 00 1111222344569999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC---CCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCC
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTGV 360 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~ 360 (556)
++||+|..-|+++||++.+- .....+..|...|.|+.||. ..++|++++.|..|.|+|+.. -..+.++.+|..
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred ceecccCccCceEEEEehhh---hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 99999999999999999754 45566789999999999986 347899999999999999954 356788999999
Q ss_pred ceEEEEEecCC--CeEEEEeCCCcEEEEECC-CCeEEEeec----ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 008717 361 GLISCGWFLDG--GGIFAGMTDKSICLWDLD-GRELESWKG----QKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (556)
Q Consensus 361 ~v~~i~~~~~~--~~l~~~~~dg~i~vwd~~-~~~~~~~~~----~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~ 433 (556)
.|+++.|..+| ..+++++.|+.|.+=-.+ ...-..+.. .....+++|+..|..+++++++.|..|+|||+.++
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 99999999877 678999999877543222 111111111 11226899999999999999999999999999998
Q ss_pred e--eeee---ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 434 F--ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 434 ~--~~~~---~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
+ ..+. .|.+....+...|.|.|+++.+.|.++.++|..++ +++.+..||...++. +.| .+|-+.|++.+.|
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG--~kF-~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTG--VKF-LNDCKHLISVSGD 704 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheee--eee-cccchhheeecCC
Confidence 8 3332 46677888999999999999999999999999999 999999999998776 666 8899999999999
Q ss_pred CcEEEEEcCC
Q 008717 509 SQNVPEILLS 518 (556)
Q Consensus 509 g~v~iwd~~~ 518 (556)
|+|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999864
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=205.59 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=199.1
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
.+|+..-+.++|.|+|.+|++++.||.|++|+..... .....+..+...|.+++.. +++|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 3688889999999999999999999999999987552 1223333367778777764 56999999999999999998
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
++.-..+....-++.+++++.+|++++.|+.|-.|++.++...........|..+|.++.|+|.+++|++.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 88766666667789999999999999999999999999997655555555566699999999999999999999999999
Q ss_pred ECCCCe--eeee--------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC
Q 008717 429 DREANF--ERWI--------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (556)
Q Consensus 429 d~~~~~--~~~~--------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (556)
|+.++. ..+. .....++.++|+|+|..+++...|+.|++|+..+. .....+......-. +..+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEcCC
Confidence 999876 1111 11445778999999888888888999999998887 77777765433322 224444999
Q ss_pred CcEEEEeeCCCcEEEEEcCC
Q 008717 499 QAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~ 518 (556)
|+|||+++.||.|.|||+.+
T Consensus 244 G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CcEEeeeccCCcEEEEeccc
Confidence 99999999999999999995
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=183.08 Aligned_cols=260 Identities=13% Similarity=0.179 Sum_probs=203.6
Q ss_pred EEEEeCCCcEEEEEeecCC---------eeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 008717 287 LASSSKDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (556)
Q Consensus 287 las~s~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 357 (556)
|++|+....|.-+++.-.. .+.+...+..|.++|++++.+ +.++++||.|.+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5666666666555554211 123456778999999999995 89999999999999999999999999999
Q ss_pred CCCceEEEEEecCCC--eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-
Q 008717 358 TGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (556)
Q Consensus 358 ~~~~v~~i~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~- 434 (556)
|.+.|+++.|.++-. .|++|+.||.|.+|+...-........|.+.|+.++++|.|+.-++.+.|+.++.||+-.++
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 89999999999999998877766666777789999999999999999999999999999988
Q ss_pred eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 435 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
..........+.+.|+|.|.+++++..+ .|-+|.+.+. .+...+..... .+.+.| -++..+++|++|+.|.+|
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~~~r---~l~~~~--l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIENPKR---ILCATF--LDGSELLVGGDNEWISLK 234 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhhcccc---ceeeee--cCCceEEEecCCceEEEe
Confidence 4444455556669999999999988854 5899999876 55555544322 233444 478899999999999999
Q ss_pred EcCCCceeeeecCCCcccccce-eeEeEeehhhhHhhhhhcc
Q 008717 515 ILLSESVAAAASSLDNFVSSYF-CLHLFSFYLYSATMLKYLC 555 (556)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~s~~~~~~~~ 555 (556)
|-.+..+......|.+-|-.+. -..-+.+|+.+|...+++|
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK 276 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence 9998777777777776554332 1222335777777777665
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-22 Score=195.28 Aligned_cols=279 Identities=15% Similarity=0.195 Sum_probs=224.4
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC-CCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
+.--..+|.++||+.+.+.||.+-.||.|.||++..+ +-....+.++ +..|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3345678999999999999999999999999999854 3344455554 4579999999 5667889999999999999
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE--EeecccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
.+++....+....+.|++++.+|.+..+++|+.||.++.++...+.+. .......++|.+++|+|++..++.|+.||.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999999999999999999999999999999998888888766553 333444469999999999999999999999
Q ss_pred EEEEECCCCeeee------ee----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEee
Q 008717 425 ILLLDREANFERW------IE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (556)
Q Consensus 425 I~i~d~~~~~~~~------~~----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (556)
|++||..++.... .. ...-|.++.|-.++ .|++|.+.|+|.+||...+ .+++.+..|...+..+.+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav-- 253 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAV-- 253 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEE--
Confidence 9999999987211 11 22347778877665 6889999999999999998 999999999998766443
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCCcee-eeecCCCcccccceeeEeEeehhhhHhhhhhc
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSESVA-AAASSLDNFVSSYFCLHLFSFYLYSATMLKYL 554 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 554 (556)
.+++..+++++.|+.|.-+...+++-. ......+.+-..+.|+.++...++++.....+
T Consensus 254 -~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l 313 (691)
T KOG2048|consen 254 -ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTL 313 (691)
T ss_pred -cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEE
Confidence 678899999999999999988776442 22223334445577888888888887765443
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=193.58 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=198.8
Q ss_pred CEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceE
Q 008717 285 KYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (556)
Q Consensus 285 ~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 363 (556)
.+++++. .-..+.+|.+....... ....-+++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 5666654 44578999987443221 2334568899999999999999998999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCC---------CeEEEeecccCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCC
Q 008717 364 SCGWFLDGGGIFAGMTDKSICLWDLDG---------RELESWKGQKTLRISDMAITDDG--KRIISICREAAILLLDREA 432 (556)
Q Consensus 364 ~i~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~I~i~d~~~ 432 (556)
++.|+-||.+|++|+.||.|.+|++.. -........|.-+|+++...+.| .++++++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 999999999999999999999998731 12233344555599999988764 5899999999999999999
Q ss_pred Ce-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC---------------cceeEEeCccC--ceeEEEEee
Q 008717 433 NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---------------KLVSRYKGHKR--ARFVIRSCF 494 (556)
Q Consensus 433 ~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~---------------~~~~~~~~~~~--~~~~i~~~~ 494 (556)
+. ...+.....+.+++++|-++.+++|+.+|.|.+.++.... ..+..+.||.+ .++++..
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-- 285 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-- 285 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE--
Confidence 98 6677788999999999999999999999999998875431 24566788988 6555433
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccccccee
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVSSYFC 537 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 537 (556)
+.||.+|++|++||+|+|||+.+.+.+.+.....+.|....|
T Consensus 286 -s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 286 -STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred -ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 669999999999999999999998887766644554443333
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.3e-21 Score=188.23 Aligned_cols=268 Identities=13% Similarity=0.095 Sum_probs=192.6
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
+...+..+.+|+..+ .+.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..++ +....+..+..
T Consensus 6 s~~~d~~v~~~d~~t-------~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~ 74 (300)
T TIGR03866 6 SNEKDNTISVIDTAT-------LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD 74 (300)
T ss_pred EecCCCEEEEEECCC-------CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC
Confidence 445566677775432 345666665544 6789999999976 56778899999999865 23344444433
Q ss_pred CeEEEEeCCCCCEEEEE-eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC-cEEEEECCCCeEEEe
Q 008717 319 PVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESW 396 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~ 396 (556)
+..++|+|+++.++++ +.++.|++||+.+++.+..+... ..+.+++|+|++..+++++.++ .+.+||.++......
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 5678999999977655 56899999999998877777533 3467899999999999988765 467789987655433
Q ss_pred ecccCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCe-eeeee-c-------CCceEEEEEcCCCCEEEEE-EcCCeE
Q 008717 397 KGQKTLRISDMAITDDGKRIISI-CREAAILLLDREANF-ERWIE-E-------EEVITSFSLSKDNKYLLVN-LINQEI 465 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~-~~d~~I~i~d~~~~~-~~~~~-~-------~~~i~~v~~sp~~~~l~~~-~~dg~I 465 (556)
..... .+.+++|+|+|++++++ ..++.|++||+.+++ ..... + ......++|+|++++++++ +.++.|
T Consensus 153 ~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 153 VLVDQ-RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEcCC-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 22222 56889999999988654 468999999999876 22111 1 1124568899999986554 456789
Q ss_pred EEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe-eCCCcEEEEEcCCCceeeeec
Q 008717 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 466 ~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~ 526 (556)
.+||+.++ +.+..+. +...+.. +.| +|+|++|+++ +.+|.|.+||+.+++.+....
T Consensus 232 ~v~d~~~~-~~~~~~~-~~~~~~~--~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 232 AVVDAKTY-EVLDYLL-VGQRVWQ--LAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEECCCC-cEEEEEE-eCCCcce--EEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999887 6655543 2233333 556 9999999886 469999999999999866654
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=9.9e-23 Score=200.48 Aligned_cols=279 Identities=18% Similarity=0.250 Sum_probs=202.7
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
++-...++.+.+++.....- ......+.....|.+.|..+.|.|....|++++.|.++++||+.++.- .-...+.+|.
T Consensus 67 LavadE~G~i~l~dt~~~~f-r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~ 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVF-RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHT 144 (720)
T ss_pred EEEecCCCceeeecchhhhc-chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccc
Confidence 34445566666665433211 111223556678999999999999667899999999999999997532 2233588999
Q ss_pred CCeEEEEeCCC-CCEEEEEeCCCcEEEEECCCCc---------------------------EEEEEecCCCceEE---EE
Q 008717 318 KPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE---------------------------CLHVYEKTGVGLIS---CG 366 (556)
Q Consensus 318 ~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~---i~ 366 (556)
+.|.+++|.|. ...+++|+.||.|.|||++-.. .+..-..+...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99999999995 4678999999999999986322 01111223344444 55
Q ss_pred EecCCCeEEEEeC-CCcEEEEECCCCeEE---------Eeecc--cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 367 WFLDGGGIFAGMT-DKSICLWDLDGRELE---------SWKGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 367 ~~~~~~~l~~~~~-dg~i~vwd~~~~~~~---------~~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
+..|...|++++. |+.|+|||++..... .+..+ ....+.++..+..|.++.+.+.|+.|++||+.+..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 6668899999887 999999999752211 11111 12367888888889999999999999999998865
Q ss_pred ----eeeeecC-Cc-eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 435 ----ERWIEEE-EV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 435 ----~~~~~~~-~~-i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
..+.++. .. -..-..+||+.++++|+.|...++|.+.+.......+.||...++.++++. ++.... +++++|
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~v-~TcSdD 382 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTPV-ATCSDD 382 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCCc-eeeccC
Confidence 1111111 11 122357999999999999999999999988778888999999999987777 667665 556999
Q ss_pred CcEEEEEcCCCc
Q 008717 509 SQNVPEILLSES 520 (556)
Q Consensus 509 g~v~iwd~~~~~ 520 (556)
..++||++.++-
T Consensus 383 ~~~kiW~l~~~l 394 (720)
T KOG0321|consen 383 FRVKIWRLSNGL 394 (720)
T ss_pred cceEEEeccCch
Confidence 999999996543
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-22 Score=182.10 Aligned_cols=261 Identities=11% Similarity=0.184 Sum_probs=200.9
Q ss_pred ccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec
Q 008717 235 DSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (556)
Q Consensus 235 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 314 (556)
+...|.+.....+...+|..+.....+...+...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.. ..+.
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~----~~ig 91 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE----DQIG 91 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----eeec
Confidence 334455444444444556666666666665555556999999999997 45689999999999999997643 4567
Q ss_pred CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 394 (556)
.|..+|.|+.+++-...+++||.|++|++||.+.......+.. ...|.++.. .|+.|++|+.|..|.+||+++....
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccch
Confidence 7999999999999889999999999999999987655555553 337887766 4789999999999999999864332
Q ss_pred E--eecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC------eeeeeec---------CCceEEEEEcCCCCEEE
Q 008717 395 S--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN------FERWIEE---------EEVITSFSLSKDNKYLL 457 (556)
Q Consensus 395 ~--~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~------~~~~~~~---------~~~i~~v~~sp~~~~l~ 457 (556)
. ....-...++|+++-|++.-+++++-||.|.+=.+... +..+..| -.+|++++|+|-...|+
T Consensus 169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence 2 11122237999999999888999999999887666544 1333333 24799999999999999
Q ss_pred EEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
+|+.||.|.+||+.+. +.+..+......+.. +.| +.+|..||.++.
T Consensus 249 TgGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~s--lsf-s~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNR-KRLKQLAKYETSISS--LSF-SMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcch-hhhhhccCCCCceEE--EEe-ccCCCeEEEEec
Confidence 9999999999999988 788888777665444 455 889999999875
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=201.20 Aligned_cols=297 Identities=15% Similarity=0.219 Sum_probs=233.1
Q ss_pred cccceeecCCCCceeeecCCCCCCCCCCc----ceeEEecccCCcEEEEEEccC-----------CCEEEEEeCCCcEEE
Q 008717 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPS----QTLQILEAHSDEVWFLQFSHD-----------GKYLASSSKDQSAII 298 (556)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~l~~h~~~V~~~~~sp~-----------g~~las~s~dg~i~i 298 (556)
.-.|.|....+....+|.|+....|+... .....+--|...||.+.--|- ..-++|++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34577888888888889999888776532 123334469999999987661 124889999999999
Q ss_pred EEeecCCeeEEE----------------------------------EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 299 WEVKEDGQVSLK----------------------------------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 299 wd~~~~~~~~~~----------------------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
|++......... ...-+....+.+++.||+|++|++|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998741110000 0011234569999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEec---CCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCC--CEEEE
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG--KRIIS 418 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~ 418 (556)
++..-+....++.|...|.|+.|+. ..+.|++++.|..|.+||.. .-.+......|...|+++.|.-.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 9999888889999999999999985 35779999999999999995 344555556667799999999887 67899
Q ss_pred EeCCCeEEEEECCCCe--eee-----eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCc-eeEE
Q 008717 419 ICREAAILLLDREANF--ERW-----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-RFVI 490 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~~~-----~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~-~~~i 490 (556)
++.|..|.+--.+... ..+ ......+..+++.|..+++++++.|..|+|||+.++ +..+.|++..+. ...|
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceE
Confidence 9999887665444221 112 223567899999999999999999999999999999 899999875443 4567
Q ss_pred EEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 491 RSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
.+.. .|.|-|||+...|.++.++|+-+++.++..++|.-.|
T Consensus 646 Kv~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 646 KVIL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred EEEE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 7777 9999999999999999999999999999888876544
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.3e-23 Score=193.98 Aligned_cols=320 Identities=14% Similarity=0.157 Sum_probs=235.9
Q ss_pred hhHHHHHHHHHHHHhcCC-CCccCCcchHHHH-HHHHHhh-----ccccceeecCCCCceeeecCCCCCCCCCC---cce
Q 008717 195 EDEKSRSKFLAKLQKLLP-ASVVIPEKRLEHL-VEKALDV-----QRDSCLFHNTSDSDFSLYSDHQCGRNRIP---SQT 264 (556)
Q Consensus 195 ~~~~~r~~l~~~l~~~~~-~~~~~p~~rl~~l-l~~~~~~-----q~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~ 264 (556)
+.+.+-..++......+. ....+|+.+|... ++.+-.. ......||++....+..--|.......+. ...
T Consensus 170 e~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~ 249 (514)
T KOG2055|consen 170 EEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK 249 (514)
T ss_pred cccccHHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh
Confidence 334444566666666666 5566777666542 2222111 12223466655544433333333333332 345
Q ss_pred eEEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
++.+.-...+|.+++|.|+|+ .+++++.....+.||+.+. ++..+....++. ..+.....||++++|+..|..|.|.
T Consensus 250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred heeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-ccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 667766778999999999999 8999999999999999865 334555555555 3567788999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
+....|++.+.+++ ..+.|..++|+.|++.|++++.+|.|.+||++...+ ..+.....-.-++++.+++|.++++|+.
T Consensus 329 lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 329 LLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred eehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 99999999998887 456799999999999999999999999999987544 4444444334577888899999999999
Q ss_pred CCeEEEEECCCCe--------eeeeecCCceEEEEEcCCCCEEEEEEc--CCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 422 EAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 422 d~~I~i~d~~~~~--------~~~~~~~~~i~~v~~sp~~~~l~~~~~--dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
.|.|.|||..+.. ..+......|+++.|+||++.|+.++. +..+++-.+.+. .....+......+..++
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVT 486 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceE
Confidence 9999999976543 233445678999999999999988875 567999999887 66666655554444444
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+..|||.+.++|.|.++|.|.+|.+.
T Consensus 487 c~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCCCceeeEeec
Confidence 54459999999999999999999875
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1e-21 Score=177.31 Aligned_cols=254 Identities=14% Similarity=0.229 Sum_probs=199.7
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (556)
..+...+.|..+..|+-...+. ..| +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~-~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q----~~~v~~ 111 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQ-LVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ----VSQVAA 111 (347)
T ss_pred ceEEecccCCceEEEEEecCCc-ccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC----eeeeee
Confidence 3344677888888886554211 111 4456799999999999999999999999999999999862 356678
Q ss_pred CCCCeEEEEeCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe-
Q 008717 316 HRKPVFTVSWSPNDH--QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE- 392 (556)
Q Consensus 316 h~~~v~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~- 392 (556)
|.++|.++.|-+... .|+|||.|++|+.||++...++.++.-. ..++++..- ...++++..+..|.+|++++..
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv~--~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADVL--YPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhcc--CceeEEEecCCcEEEEEcCCCcc
Confidence 999999999987655 8999999999999999999888888744 456666553 4578889999999999997532
Q ss_pred -EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC--e--eeeeecC---------CceEEEEEcCCCCEEEE
Q 008717 393 -LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--F--ERWIEEE---------EVITSFSLSKDNKYLLV 458 (556)
Q Consensus 393 -~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~--~--~~~~~~~---------~~i~~v~~sp~~~~l~~ 458 (556)
.+.....-.-.++|++..+|....+.|+-+|.+.+..+..+ + ..+..|. ..|++++|+|.-..|++
T Consensus 189 e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 189 EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 22333333337999999999998999999999999988775 2 4444443 25789999999899999
Q ss_pred EEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 459 ~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
++.||++.+||-... ..+.+...|..++.. +.| +.+|.++|-+
T Consensus 269 aGsDGtf~FWDkdar-~kLk~s~~~~qpItc--c~f-n~~G~ifaYA 311 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDAR-TKLKTSETHPQPITC--CSF-NRNGSIFAYA 311 (347)
T ss_pred ecCCceEEEecchhh-hhhhccCcCCCccce--eEe-cCCCCEEEEE
Confidence 999999999998776 778888889998554 555 8899877644
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=177.72 Aligned_cols=230 Identities=21% Similarity=0.343 Sum_probs=187.4
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCCeeEEEEEec
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 314 (556)
.+...+.|..+.++.... .-+.+.+..|.||.++|+.++|.+ -|.+||+++.||.|.||.-.++ .........
T Consensus 25 rlATcsSD~tVkIf~v~~----n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~ 99 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRN----NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHA 99 (299)
T ss_pred eeeeecCCccEEEEEEcC----CCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhh
Confidence 345667788888876443 233678999999999999999988 8999999999999999998854 666777788
Q ss_pred CCCCCeEEEEeCCC--CCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCceEEEEEecC---C-----------CeEE
Q 008717 315 GHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLD---G-----------GGIF 375 (556)
Q Consensus 315 ~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~ 375 (556)
.|...|++++|.|. |-.|+.++.||.|.|.+.++. ...+....|.-.|++++|.|. | +.|+
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 99999999999996 468899999999999998654 223455688999999999985 4 5699
Q ss_pred EEeCCCcEEEEECCCC--eEEEeecccCCCeeEEEEccCC----CEEEEEeCCCeEEEEECCCCe-----eeeeecCCce
Q 008717 376 AGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANF-----ERWIEEEEVI 444 (556)
Q Consensus 376 ~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~s~~g----~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~i 444 (556)
+|+.|..|++|+.+.. ........|...|++++|.|.- .+|++++.||+|.||..+... ..+......+
T Consensus 180 SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce
Confidence 9999999999999763 2233345566699999999964 479999999999999877432 2223356779
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 445 TSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
..++||+.|+.|++++.|+.+.+|--.
T Consensus 260 w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999999999999999999999999744
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=193.20 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=186.5
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC---
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--- 347 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--- 347 (556)
-.++|.|++-+|+|.+|+.|+..|.+++|.+.++ .++..+..|-..|+|+.|+-||.+|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccc---cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 4578999999999999999999999999999988 5667789999999999999999999999999999999873
Q ss_pred ------CCcEEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 348 ------SGECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 348 ------~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
+-++.+.+..|.-+|+++...+. ..++++++.|.++++||+..+.+........ .+.+++.+|-+..+++|
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-SIKAVALDPAERVVYIG 235 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-cceeEEEcccccEEEec
Confidence 33577889999999999988764 4689999999999999999877655444443 89999999999999999
Q ss_pred eCCCeEEEEECCCCe------------------eeeeecCC--ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE
Q 008717 420 CREAAILLLDREANF------------------ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~------------------~~~~~~~~--~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~ 479 (556)
+.+|.|.+.++.... ..+.+|.. .|+|++++-||..|++|+.||.+.|||+.+. +++++
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRt 314 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRT 314 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHH
Confidence 999999998865321 33456766 9999999999999999999999999999998 88888
Q ss_pred EeCccCceeEEEE
Q 008717 480 YKGHKRARFVIRS 492 (556)
Q Consensus 480 ~~~~~~~~~~i~~ 492 (556)
+....++|+.+.+
T Consensus 315 l~~~kgpVtnL~i 327 (476)
T KOG0646|consen 315 LQTSKGPVTNLQI 327 (476)
T ss_pred HhhhccccceeEe
Confidence 8756666665555
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.3e-24 Score=213.50 Aligned_cols=237 Identities=17% Similarity=0.305 Sum_probs=205.9
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
+.+-.|...|.|+..-..++.+++|+.|-.+-+|.+... .....+.+|..+|.++.|+++...|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 345568889999988778899999999999999998744 34456899999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
+..++.++++.+|...+.++.|+|-+.+++.|+.|+.+++||++.+-.......|...|.++.|+|+|++++.++.|.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 99999999999999999999999999999999999999999998544444444466689999999999999999999999
Q ss_pred EEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
+|||...++ ..+..|.+.+.++.|+|..-+++.|+.|+++++||+++. +.+.........+.. ..| +|++..++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~--~~f-n~~~~~~~ 254 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRS--LAF-NPDGKIVL 254 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCcee--eee-cCCceeee
Confidence 999999988 567779999999999999999999999999999999987 777777666555333 555 99999988
Q ss_pred EeeCCC
Q 008717 504 SGSEDS 509 (556)
Q Consensus 504 sgs~dg 509 (556)
+|..+.
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 886543
No 124
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.7e-22 Score=197.64 Aligned_cols=242 Identities=15% Similarity=0.194 Sum_probs=195.4
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 356 (556)
-++|+ ..+.||.|. ...|++|+..++. ...+.. .+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~-v~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGS-VTELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCc-eEEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 46788 445677664 4589999998763 223333 338899999999999999999999999999999999999999
Q ss_pred c-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 357 K-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 357 ~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
. |...|-+++|. +..+.+|+.|+.|..+|++..+. .....+|...|..++|++|+.++++|+.|+.+.|||.....
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 89999999997 67899999999999999985332 22355566699999999999999999999999999996665
Q ss_pred --eeeeecCCceEEEEEcC-CCCEEEEEE--cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe--eC
Q 008717 435 --ERWIEEEEVITSFSLSK-DNKYLLVNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG--SE 507 (556)
Q Consensus 435 --~~~~~~~~~i~~v~~sp-~~~~l~~~~--~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg--s~ 507 (556)
..+..|...|..++|+| ....||+|+ .|++|++||+.++ ..+.......+ +..+.| ++..+-|+++ -.
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgsQ---VcsL~W-sk~~kEi~sthG~s 409 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGSQ---VCSLIW-SKKYKELLSTHGYS 409 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCCc---eeeEEE-cCCCCEEEEecCCC
Confidence 88889999999999999 456788764 5899999999998 77777765544 233555 8887666554 34
Q ss_pred CCcEEEEEcCCCceeeeecCCCc
Q 008717 508 DSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 508 dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
++.|.||++.+-+++....+|..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred CCcEEEEeccccceeeeecCCcc
Confidence 77999999988777776666664
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.3e-20 Score=180.85 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=206.0
Q ss_pred ccceeecCCCCceeeecCCCCCCCCCC----cceeEEecccC-CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEE
Q 008717 235 DSCLFHNTSDSDFSLYSDHQCGRNRIP----SQTLQILEAHS-DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSL 309 (556)
Q Consensus 235 ~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~l~~h~-~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 309 (556)
-.+.||+..+..+..+......-|... .+....++++. .-|.|++|.++|+ ++||..+|.|.||+..+. +.
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~ 279 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RI 279 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eE
Confidence 346688877766654444433333222 24445555544 5799999999997 789999999999999644 34
Q ss_pred EEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc---------------------------------------
Q 008717 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--------------------------------------- 350 (556)
Q Consensus 310 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------- 350 (556)
.+....|++.|.+++...+|..| +|+.|..|..||-.-.+
T Consensus 280 ~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred EeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 44455999999999999988655 49999999999832110
Q ss_pred -EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 351 -CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 351 -~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
......+|....+.++.+|+.+.+++++.|+.+++|+ +.+...... -..++.|+.|+|.| .++.|+..|...+.|
T Consensus 359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence 0011235777889999999999999999999999999 333322222 22379999999999 999999999999999
Q ss_pred CCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 430 REANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 430 ~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
.++.. ........+++.+.|+|+|.+||+|+.|+.|+||-+...+.....+..+.. .+...+.| ++|+++|.+-+.|
T Consensus 435 ~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDw-S~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 435 TETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDW-SSDSQFLVSNSGD 512 (626)
T ss_pred cccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeee-cCCCceEEeccCc
Confidence 99976 444455889999999999999999999999999999766566666655555 34444566 9999999999999
Q ss_pred CcEEEEE
Q 008717 509 SQNVPEI 515 (556)
Q Consensus 509 g~v~iwd 515 (556)
-.|..|.
T Consensus 513 ~eiLyW~ 519 (626)
T KOG2106|consen 513 YEILYWK 519 (626)
T ss_pred eEEEEEc
Confidence 9999993
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.5e-22 Score=193.74 Aligned_cols=248 Identities=15% Similarity=0.190 Sum_probs=202.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC--CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
.|..-|.++.+|...+++.||+. |.|+|||+...+...++..+.. ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48888999999999999999975 7899999985544334444433 35679999999999999999999999999997
Q ss_pred CCcEE--EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 348 SGECL--HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 348 ~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
+.... ..+....-....++.+||.+..+++..||.|.|||+.++.+...+.+|...+.||.+++||..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 65433 2333334456788999999999999999999999999887776666666799999999999999999999999
Q ss_pred EEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEE
Q 008717 426 LLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 426 ~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
+.||++.+. .........|.++..+|++.++++|-.++.+.+...... ....+.-|..- ++.+.| .+-|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheSc--VLSlKF-a~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHESC--VLSLKF-AYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeecccccE--EEEEEe-cccCceeee
Confidence 999999987 445556788999999999999999999999888886553 33444555555 455667 889999999
Q ss_pred eeCCCcEEEEEcCCCceee
Q 008717 505 GSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~ 523 (556)
.+.|+.+..|...-|.-+.
T Consensus 651 tGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred cCchhhhhhccCcccccee
Confidence 9999999999877665443
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.6e-21 Score=175.35 Aligned_cols=206 Identities=17% Similarity=0.262 Sum_probs=170.3
Q ss_pred ecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCee---------EE---EEEecCCCCCeEEEEeCC-CCCEEE
Q 008717 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV---------SL---KHRLSGHRKPVFTVSWSP-NDHQLL 333 (556)
Q Consensus 268 l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~---------~~---~~~~~~h~~~v~~l~~s~-~~~~l~ 333 (556)
...|.+.|+++...+ .|+|+++|+.||.|.+||++..... .+ ...-.+|.-.|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345889999999998 7999999999999999999853311 01 111246778899999999 556788
Q ss_pred EEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC---CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEc
Q 008717 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (556)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s 410 (556)
+++.|.++++||.+|-+....|+ ..+.|++-+|+|- ...+++|..+-.|++.|+.++.......+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 88999999999999988887776 4556889999983 3467788888899999999988888787887899999999
Q ss_pred cCCCE-EEEEeCCCeEEEEECCCCe-----------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 411 DDGKR-IISICREAAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 411 ~~g~~-l~~~~~d~~I~i~d~~~~~-----------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
|...+ |++|+.||.|++||++... ..-..|.+.+++++|+.++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 99886 6789999999999998542 11335778899999999999999999999999999987
Q ss_pred CC
Q 008717 473 DP 474 (556)
Q Consensus 473 ~~ 474 (556)
+.
T Consensus 278 G~ 279 (397)
T KOG4283|consen 278 GR 279 (397)
T ss_pred Cc
Confidence 73
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.4e-22 Score=202.24 Aligned_cols=293 Identities=14% Similarity=0.144 Sum_probs=225.0
Q ss_pred cchHHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCC-----cceeEEecccCCcEEEEEEc-cCCCEEEEEeC
Q 008717 219 EKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIP-----SQTLQILEAHSDEVWFLQFS-HDGKYLASSSK 292 (556)
Q Consensus 219 ~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s-p~g~~las~s~ 292 (556)
.+++...+..++.-......|-+...-.++.+.|.....|.+. .+.++.-.||..+..|+.|. .+|..+.+++.
T Consensus 276 ~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 276 KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 3445555555554444444444444444444444444443333 45667778999999999998 58889999999
Q ss_pred CCcEEEEEeecCC------e---------e------------------------------------EE------------
Q 008717 293 DQSAIIWEVKEDG------Q---------V------------------------------------SL------------ 309 (556)
Q Consensus 293 dg~i~iwd~~~~~------~---------~------------------------------------~~------------ 309 (556)
|++.+.+++.... + . ..
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 9888777753100 0 0 00
Q ss_pred EEE-----ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---ecCCCceEEEEEecCCCeEEEEeCCC
Q 008717 310 KHR-----LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDK 381 (556)
Q Consensus 310 ~~~-----~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg 381 (556)
.+. ++.....+++++.++.|++.+.|...|+|-+|++.+|-....| ..|..+|+.++...-++.+++++.+|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 000 1112356889999999999999999999999999999988888 47899999999988888999999999
Q ss_pred cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
.+++||..++.+........ .+.++.++.....++.+..|-.|+++|..+.+ ..+.+|...|+.++|||||++|+++
T Consensus 516 ilkfw~f~~k~l~~~l~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGS-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eEEEEecCCcceeeeeccCC-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 99999998877544433332 78999999999999999999999999999988 7788899999999999999999999
Q ss_pred EcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC-CcEEEEEcC
Q 008717 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-SQNVPEILL 517 (556)
Q Consensus 460 ~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d-g~v~iwd~~ 517 (556)
+.|++|++||+.++ .++-.+.-.... +.+.| +|+|.+||+...| .-|++|.-.
T Consensus 595 smD~tIr~wDlpt~-~lID~~~vd~~~---~sls~-SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTG-TLIDGLLVDSPC---TSLSF-SPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ecCCcEEEEeccCc-ceeeeEecCCcc---eeeEE-CCCCCEEEEEEecCceEEEEEch
Confidence 99999999999998 777776544443 55677 9999999999998 679999533
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=6.1e-22 Score=188.01 Aligned_cols=265 Identities=13% Similarity=0.136 Sum_probs=206.1
Q ss_pred ceeEEecccCCcEEEEEEccCC--CEEEEEeCCCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQE 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g--~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d 338 (556)
....+.+-|.++|++++|+|.. +++|+|..-|.|-+||+.+. .....+..+..|..+|.++.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4456677899999999999944 58899999999999999522 22244567788999999999999 45789999999
Q ss_pred CcEEEEECCCCcE--EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--EEEeecccCCCeeEEEEccCCC
Q 008717 339 EAIRRWDVNSGEC--LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 339 g~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
|+|++-|++++.. +.........+.++.|+.+...++++..=|...+||+++.. ...+..+.. .|.+|+++|...
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCc
Confidence 9999999987643 33333356677888898888888888888899999998533 344444444 899999999765
Q ss_pred -EEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC---CCCcceeEEeCc-
Q 008717 415 -RIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE---SDPKLVSRYKGH- 483 (556)
Q Consensus 415 -~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~---~~~~~~~~~~~~- 483 (556)
++++++.|++.+|||++.-. .....|...|.+..|||++-.|++.+.|..|+|||.. ....+..++...
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 68999999999999998754 3456789999999999988779999999999999984 221344444321
Q ss_pred --cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 484 --KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 484 --~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
......+.+.| .|+..+|++|..-..|-|+|-..++++.....+.
T Consensus 416 ~t~RwlT~fKA~W-~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 416 RTGRWLTPFKAAW-DPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred cccccccchhhee-CCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 12334456677 9999999999999999999999998766544333
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.7e-22 Score=194.29 Aligned_cols=255 Identities=17% Similarity=0.221 Sum_probs=206.1
Q ss_pred CCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE-----------------------------
Q 008717 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS----------------------------- 308 (556)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~----------------------------- 308 (556)
..+|..+...++||++.|.|+...|.|.+||+|+.||+|+||.+.++..+.
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc
Confidence 467888899999999999999999999999999999999999997632110
Q ss_pred -----------------------------------------------EEEEecCCCCCeEEEEeCCCCCEEEEEeCC---
Q 008717 309 -----------------------------------------------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (556)
Q Consensus 309 -----------------------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 338 (556)
-+.....|...|..+.|+..|.||++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 001122366778888899899999887664
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
..|.|+++...+...-|....+.|.++.|+|...++++++. ..|++||+..+.+..........|..++++|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 46888888777666667677888999999999999999887 67999999765543333333348999999999999999
Q ss_pred EeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC--C----C--CcceeEEeCccCc-
Q 008717 419 ICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE--S----D--PKLVSRYKGHKRA- 486 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~--~----~--~~~~~~~~~~~~~- 486 (556)
++.|+.+..||+.-.. ..+..|...+++|+|++.-.++++|+.||++.|+.-. + . --++..+++|...
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 9999999999998765 6677899999999999999999999999999998532 1 1 1245778888653
Q ss_pred -eeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 487 -RFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 487 -~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
.-++.++| +|...+|++++.||+|++|
T Consensus 705 ~~gVLd~~w-HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIW-HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecc-cCCCceEEecCCCceEEee
Confidence 33555677 9999999999999999998
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.3e-22 Score=186.93 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=182.8
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEE------------------ecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEE
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHR------------------LSGHRKPVFTVSWSPND-HQLLTCGQEEAIRR 343 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 343 (556)
.|+|+|.|+.|..|.|||+.--....+... -.+|+.+|.+++|+.+- +.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999863222211111 23699999999998754 57899999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC--CeEEEeecccCCCeeEEEEccCCC-EEEEE
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGK-RIISI 419 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~ 419 (556)
||+.+|++..++..|...|.++.|+| ....+++|+.|++|.+.|.+. ..-..|.. .+.|-.++|+|... .++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence 99999999999999999999999999 567899999999999999983 22223332 23799999999765 67788
Q ss_pred eCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
+.||+|+-+|+|... .....|..+|.++++++.- .++++++.|+.+++|++... .. .....|.-....+.+...
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~-~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SP-KSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CC-cccccccccccceeeccc
Confidence 899999999999874 6778899999999999864 56888999999999999754 22 222233321111222222
Q ss_pred CCCC-cEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 496 GFEQ-AFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 496 s~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
.|+- -+++.|+..+.++|||+.+...+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 3443 357888888899999999887665544
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=190.69 Aligned_cols=267 Identities=13% Similarity=0.167 Sum_probs=221.9
Q ss_pred ecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC
Q 008717 250 YSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN 328 (556)
Q Consensus 250 ~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 328 (556)
...+....|++. .+.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..+ +.+.++....++|+.++|..|
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEeccC
Confidence 444444445443 6789999999999999999998889999999999999999977 566777755699999999999
Q ss_pred CCE-EEEEeCCCcEEEEECCCCcEEEEE----------------------------------e-----------------
Q 008717 329 DHQ-LLTCGQEEAIRRWDVNSGECLHVY----------------------------------E----------------- 356 (556)
Q Consensus 329 ~~~-l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~----------------- 356 (556)
|+. +++|+..|.+.+||++..+.+... .
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 975 455666799999998632211000 0
Q ss_pred --------------------------------------------------------------------------------
Q 008717 357 -------------------------------------------------------------------------------- 356 (556)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (556)
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence
Q ss_pred ------------------------cC------CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee---cccCCC
Q 008717 357 ------------------------KT------GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLR 403 (556)
Q Consensus 357 ------------------------~~------~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~ 403 (556)
.+ ...+++++.++.|++.+.|+..|.|-+|++.++..+... ..|.++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 01 145778888999999999999999999999987766655 356679
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 404 ISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
|+.++.+.-++.+++++.+|.+.+||+.+.. .........++++..+.....++++..|-.|+++|+.+. +.++.|.|
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~g 574 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWG 574 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhc
Confidence 9999999999999999999999999999887 555566788899999999999999999999999999998 99999999
Q ss_pred ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 483 HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
|.+.++. .+| ||||++|++++.|++|++||+.++.++.
T Consensus 575 h~nritd--~~F-S~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 575 HGNRITD--MTF-SPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred cccceee--eEe-CCCCcEEEEeecCCcEEEEeccCcceee
Confidence 9999666 777 9999999999999999999999988753
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=8.3e-21 Score=170.70 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=207.7
Q ss_pred cccceeecCCCCceeeecCCCCCCC---CCCccee-----EEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecC
Q 008717 234 RDSCLFHNTSDSDFSLYSDHQCGRN---RIPSQTL-----QILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKED 304 (556)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~-----~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~ 304 (556)
..+.+.++..++.+.+|+....... .+..+.. +.-.+|+-.|.++.|-| |...+.+++.|.+++|||.++-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 3456678888989998876544311 1111111 12347888999999999 7778899999999999999875
Q ss_pred CeeEEEEEecCCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCe-EEEEeCC
Q 008717 305 GQVSLKHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTD 380 (556)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d 380 (556)
+ ....|+ .++.|++-+|||- ..++|+|..+-.|++.|+.+|.+.+++.+|...|.++.|+|...+ |++|+.|
T Consensus 135 Q---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 135 Q---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD 210 (397)
T ss_pred e---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCC
Confidence 3 333333 4577888899983 457788888889999999999999999999999999999997665 6789999
Q ss_pred CcEEEEECCC--CeEEEe-------------ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee-----c
Q 008717 381 KSICLWDLDG--RELESW-------------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-----E 440 (556)
Q Consensus 381 g~i~vwd~~~--~~~~~~-------------~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~-----~ 440 (556)
|.|++||++. +.+..+ ...|.+.|..++|+.++.++++++.|..+++|+..++...... +
T Consensus 211 g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~ 290 (397)
T KOG4283|consen 211 GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH 290 (397)
T ss_pred ceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc
Confidence 9999999963 222222 2345568999999999999999999999999999988722211 1
Q ss_pred CCc---eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 441 EEV---ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 441 ~~~---i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+.. -..+. +.+...++.--.++.+.++++-++ ..+..+.+|-.. +.++++.|+-+...+|+.|+.|+.|-..
T Consensus 291 n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~---i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 291 NQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKR---INCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccce---eeEEeecCchhhhhccccCCcccccccc
Confidence 111 11122 333334444444689999999998 899999999544 5567768898889999999999999874
Q ss_pred CCce
Q 008717 518 SESV 521 (556)
Q Consensus 518 ~~~~ 521 (556)
-..+
T Consensus 366 l~~p 369 (397)
T KOG4283|consen 366 LKSP 369 (397)
T ss_pred ccCC
Confidence 3333
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.3e-22 Score=198.45 Aligned_cols=253 Identities=13% Similarity=0.215 Sum_probs=187.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCC---CCeEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHR---KPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~---~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 348 (556)
...++..+++-..|+.++.. .+.||.+..... ..+...+.... -.+..++|.. +.++||+++.+|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34566677888888887653 788888764332 12222222211 2355678875 568999999999999999976
Q ss_pred ---CcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc-CCCEEEEEeCCC
Q 008717 349 ---GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (556)
Q Consensus 349 ---~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~ 423 (556)
.+.+..|..|...+++++|++ ..++|++|+.||.|++||++.+.-..........|++++|+| .+..++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 455668889999999999998 567889999999999999987655544444556899999999 467899999999
Q ss_pred eEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-CceeEEEEeecCCCC
Q 008717 424 AILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQ 499 (556)
Q Consensus 424 ~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~ 499 (556)
.+.+||++... ..+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+. +.-....-+. .++ -++.| -|+.
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~-~~~~~~tInTiapv--~rVkW-RP~~ 275 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS-RAKPKHTINTIAPV--GRVKW-RPAR 275 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC-CccceeEEeeccee--eeeee-ccCc
Confidence 99999999877 778899999999999999999999999999999999865 3333332232 232 33455 6655
Q ss_pred c-EEEEeeC--CCcEEEEEcCCCcee-eeecCCCcc
Q 008717 500 A-FIASGSE--DSQNVPEILLSESVA-AAASSLDNF 531 (556)
Q Consensus 500 ~-~l~sgs~--dg~v~iwd~~~~~~~-~~~~~~~~~ 531 (556)
. .||+++. |-.|+|||++..-+- .....|+..
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~ 311 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS 311 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence 4 4666654 789999999876543 333444443
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.9e-19 Score=177.08 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=173.2
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
+..+++++.|+.+++||..++ +....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-c
Confidence 356889999999999999865 3445555554 46789999999977 5667789999999999988777765443 5
Q ss_pred EEEEEecCCCeEEEE-eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC-eEEEEECCCCe-eeeee
Q 008717 363 ISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANF-ERWIE 439 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~I~i~d~~~~~-~~~~~ 439 (556)
..++|+|+++.++++ +.++.|++||+++.......... ..+.+++|+|+|.++++++.++ .+.+||..+.. .....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 678999999987665 56899999999876544333322 2578899999999999888765 57788998876 33333
Q ss_pred cCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCcc-----CceeEEEEeecCCCCcEEEE-eeCCCcEE
Q 008717 440 EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHK-----RARFVIRSCFGGFEQAFIAS-GSEDSQNV 512 (556)
Q Consensus 440 ~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~s-gs~dg~v~ 512 (556)
....+.+++|+|+++++++++ .++.|++||+.++ +.+..+..+. .......+.| +|++++++. .+.++.|.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEE
Confidence 445567899999999886554 5899999999987 6666654321 1222234556 899998654 45577899
Q ss_pred EEEcCCCceeeee
Q 008717 513 PEILLSESVAAAA 525 (556)
Q Consensus 513 iwd~~~~~~~~~~ 525 (556)
+||+.++++....
T Consensus 233 v~d~~~~~~~~~~ 245 (300)
T TIGR03866 233 VVDAKTYEVLDYL 245 (300)
T ss_pred EEECCCCcEEEEE
Confidence 9999988876543
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=4.7e-21 Score=188.78 Aligned_cols=244 Identities=18% Similarity=0.292 Sum_probs=187.9
Q ss_pred EEEEcc---CCCEEEEEeCCCcEEEEEeecCCe---eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 277 FLQFSH---DGKYLASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 277 ~~~~sp---~g~~las~s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
++.|++ ..+.||.+..||.|.++|...... ...+.....|.++|..+.|.|....|++++.|.++++||+.+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 355555 345788999999999999874211 01235567899999999999977899999999999999999998
Q ss_pred EEEE--EecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEe-------e--------------------ccc
Q 008717 351 CLHV--YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESW-------K--------------------GQK 400 (556)
Q Consensus 351 ~~~~--~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~--------------------~~~ 400 (556)
++.. +.+|...|.+++|.| |...|++|+.||.|.|||++-.....+ . ..+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999 556788999999999999963211000 0 011
Q ss_pred CCCeeE---EEEccCCCEEEEEeC-CCeEEEEECCCCee----------eeeec---CCceEEEEEcCCCCEEEEEEcCC
Q 008717 401 TLRISD---MAITDDGKRIISICR-EAAILLLDREANFE----------RWIEE---EEVITSFSLSKDNKYLLVNLINQ 463 (556)
Q Consensus 401 ~~~v~~---v~~s~~g~~l~~~~~-d~~I~i~d~~~~~~----------~~~~~---~~~i~~v~~sp~~~~l~~~~~dg 463 (556)
...|.+ +.+..|...|++++. |+.|+|||++.... .+..+ ...++++..+..|.+|++.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 123444 555677788888887 99999999998651 11122 33577888888899999999999
Q ss_pred eEEEEEcCCC-CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 464 EIHLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 464 ~I~lwd~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.|++||+.+. ..++..+.++....+.+..+- +||+.+|++|+.|...++|.+.+-..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccC
Confidence 9999999754 246677788877766777777 99999999999999999999886543
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=178.83 Aligned_cols=262 Identities=15% Similarity=0.175 Sum_probs=201.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEECCCCc
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 350 (556)
.+.|+++.|+|....|++|+.||+++||.+... ....++.+.--..+|.+.+|+|+|. .+++++.....+.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999999999999999999999999843 2245566666678999999999999 88999999999999998887
Q ss_pred EEEEEe--cC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 351 CLHVYE--KT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 351 ~~~~~~--~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
....-. ++ ...+.....++++++|++.+..|.|.+....++++........ .|..++|+.|++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-VVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-EEeeEEEecCCcEEEEEcCCceEEE
Confidence 543222 22 3456778889999999999999999999998887765555443 8999999999999999999999999
Q ss_pred EECCCCe-eeeeecCCc--eEEEEEcCCCCEEEEEEcCCeEEEEEcCC-----CCcceeEEeCccCceeEEEEeecCCCC
Q 008717 428 LDREANF-ERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLWSIES-----DPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 428 ~d~~~~~-~~~~~~~~~--i~~v~~sp~~~~l~~~~~dg~I~lwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (556)
||++... .......+. -++++.|+++.|||+|+..|.|.|||..+ .++++.++..-...+.. +.| ++|.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its--l~F-n~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS--LQF-NHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee--eee-Ccch
Confidence 9999987 322223333 46778889999999999999999999643 23566666555555433 445 9999
Q ss_pred cEEEEeeC--CCcEEEEEcCCCceeeeecCCCcccccceee
Q 008717 500 AFIASGSE--DSQNVPEILLSESVAAAASSLDNFVSSYFCL 538 (556)
Q Consensus 500 ~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 538 (556)
++||.+|. +..+++-.+.+-.+..-.......+.-+.|+
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 99888776 6788888877655543333333334444443
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.5e-21 Score=180.27 Aligned_cols=225 Identities=15% Similarity=0.263 Sum_probs=176.8
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC-------------
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED------------- 304 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~------------- 304 (556)
+++++.|+.+.+|+..+ ..++.+++.|.+.|..+++.. ..+++++.|.+|+.|.+...
T Consensus 82 ~aSGs~DG~VkiWnlsq-------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~g 152 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQ-------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLG 152 (433)
T ss_pred hhccccCceEEEEehhh-------hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccc
Confidence 45777788888886554 567889999999999999987 66888899999999984321
Q ss_pred -------------C-e--------eEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCc
Q 008717 305 -------------G-Q--------VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (556)
Q Consensus 305 -------------~-~--------~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (556)
+ + ..++..+.-....|.++.|+|.. ..|++|+.|+.|.+||++++.+++.+.. ...
T Consensus 153 Idh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mR 231 (433)
T KOG0268|consen 153 IDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMR 231 (433)
T ss_pred cccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-ecc
Confidence 0 0 01223333344567888888865 4667777999999999999998877653 234
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q 008717 362 LISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440 (556)
Q Consensus 362 v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~ 440 (556)
-+.++|+|.+-.|++|+.|..++.||++. .........|.+.|.++.|+|.|+-+++|+.|.+|+||....+..+-+.|
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 56799999888899999999999999984 23333444555599999999999999999999999999999887333333
Q ss_pred ---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 441 ---EEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 441 ---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
-..|.|+.||.|.+|+++|+.|+.|++|....
T Consensus 312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred HhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 45699999999999999999999999998654
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-22 Score=200.31 Aligned_cols=197 Identities=17% Similarity=0.288 Sum_probs=177.9
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
.+..+.+|..+|.|+.|+++..+|++|+.+|+|++||+... +.++++.+|...+..+.|+|-+.+.++|+.|+.+++
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 34458999999999999999999999999999999999966 566899999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
||++...|...+.+|...+..+.|+|+|.+++.|+.|..+++||+..+++...+..|.+.+.++.|+|..-.++.|+.|+
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 99998889999999999999999999999999999999999999988888777776777999999999999999999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCC
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 463 (556)
+|++||+++.. .........|.+..|+|++..+++|....
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999876 23334467899999999999999887554
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=3.2e-20 Score=169.06 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=186.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCC-------e--eEEEEEec-CCCCCeEEEEeC-------CCCCEEEEEeCCC
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDG-------Q--VSLKHRLS-GHRKPVFTVSWS-------PNDHQLLTCGQEE 339 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~-------~--~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~dg 339 (556)
.+.|||||.-|++-+.|..+.+|++.... . ......+. .....|...+|- |+..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 57899999999999999999999986321 0 00111111 123467777875 5778999999999
Q ss_pred cEEEEECCCCcEEEEEecC--C---CceEEEEEecCCCeEEEEeCCCcEEEEEC-CCCe---EEEe----ecccCCCeeE
Q 008717 340 AIRRWDVNSGECLHVYEKT--G---VGLISCGWFLDGGGIFAGMTDKSICLWDL-DGRE---LESW----KGQKTLRISD 406 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~l~~~~~dg~i~vwd~-~~~~---~~~~----~~~~~~~v~~ 406 (556)
-|++||.-+|+....+... . ....+++|+|||.+|++|.. ..|++||+ +.+. .... .....+-+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 9999999999987777632 1 23468999999999998765 78999999 3321 1111 1122347899
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCcceeEEeC
Q 008717 407 MAITDDGK-RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 407 v~~s~~g~-~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~~~~~~~~~~ 482 (556)
++|+|-.. .+++++....+-||.-.... ....+|.+.|+.+.|.++|+.|.+|+. |-.|..||++....++..+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 99999654 88999999998888877766 666689999999999999999999886 668999999987688888888
Q ss_pred ccC-ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC-Ccee
Q 008717 483 HKR-ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS-ESVA 522 (556)
Q Consensus 483 ~~~-~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~-~~~~ 522 (556)
|.. ....|-... .|++++|++|+.||.|++||+++ +..+
T Consensus 293 hv~~TNQRI~FDl-d~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 293 HVGDTNQRILFDL-DPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred hccCccceEEEec-CCCCceeeccCCCccEEEEecCCCCCcc
Confidence 876 333344444 78999999999999999999987 5533
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.3e-20 Score=185.50 Aligned_cols=286 Identities=16% Similarity=0.242 Sum_probs=215.1
Q ss_pred Hhhcccc-ceeecCCCCceeeecCCCC-CCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee
Q 008717 230 LDVQRDS-CLFHNTSDSDFSLYSDHQC-GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307 (556)
Q Consensus 230 ~~~q~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~ 307 (556)
+.|++.. .+++.+.|..+-+|..... +.|. ..-.+....|..+.-+.+.|+|+++.+++-+..|-.++|........
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence 3444544 4556666766666654432 2221 12223334456677999999999999999999999999995544455
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCCceEEEEEecCCCeEEEEeCCCcE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 383 (556)
.....+.+|.+.|..++|+|.|.+|++.|.|.+-+++-.-..+ .+..-+.|...++|++|-+....|++|.....+
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 5666788999999999999999999999999999998754111 233334678889999998767788888888889
Q ss_pred EEEECCC----------C-eE-------------------EEee------------------------------------
Q 008717 384 CLWDLDG----------R-EL-------------------ESWK------------------------------------ 397 (556)
Q Consensus 384 ~vwd~~~----------~-~~-------------------~~~~------------------------------------ 397 (556)
++|+... + .. +...
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 9987631 0 00 0000
Q ss_pred ----------cccCCCeeEEEEccCCCEEEEEeCCC-----eEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEE
Q 008717 398 ----------GQKTLRISDMAITDDGKRIISICREA-----AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 398 ----------~~~~~~v~~v~~s~~g~~l~~~~~d~-----~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
.+|...|++++.+|+|+.+++++... .|++|+..+.. ..+..|.-.|+.++|||||++|++.+
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 04555799999999999999998754 49999999877 56889999999999999999999999
Q ss_pred cCCeEEEEEcCCCCccee---EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 461 INQEIHLWSIESDPKLVS---RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 461 ~dg~I~lwd~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.|.++.+|........-. ..+.|..- |-.|-|+|++.+++|+|.|.+|++|.....
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRI---IWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRI---IWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceE---EEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999855422222 25566664 444555999999999999999999988776
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=172.40 Aligned_cols=205 Identities=16% Similarity=0.260 Sum_probs=166.0
Q ss_pred ecccCCcEEEEEEccCC--CEEEEEeCCCcEEEEEeec-------------CCeeEEEEEecCCCCCeEEEEeCCCC-CE
Q 008717 268 LEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKE-------------DGQVSLKHRLSGHRKPVFTVSWSPND-HQ 331 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g--~~las~s~dg~i~iwd~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~~~-~~ 331 (556)
.-+|.+.|+.+.-++-| .+.|+-+..|.|+||++.. ....+++.++.+|.+.=+.++|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888887754 4556667889999999852 12346778899999999999999932 34
Q ss_pred EEEEeCCCcEEEEECCCCcEE---EEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCC--eEEEeecccCCCee
Q 008717 332 LLTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRIS 405 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~ 405 (556)
|++|..-+.|++|...+|... ..+.+|...|-.++|+|. ...|++|+.||+|+|||++.+ +.......|.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 788888889999999887643 345679999999999994 567899999999999999865 22223355556999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCe-----eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCC
Q 008717 406 DMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~ 472 (556)
.+.|+.+-.+|++|+.||+++|||++..+ ..+..|..+|+++.|+|. ...|++++.|.+|.|||+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999988899999999999999999876 478889999999999995 46788888899999999864
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.2e-19 Score=171.34 Aligned_cols=278 Identities=19% Similarity=0.259 Sum_probs=205.9
Q ss_pred ccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC--------
Q 008717 233 QRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-------- 304 (556)
Q Consensus 233 q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~-------- 304 (556)
-.+.-+..++.++.+.+|....+ +..+....|.+.|.+++.-.+|.+|- |+.|+.|..||-.-.
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~-------~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTN-------RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCc-------eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCc
Confidence 33444556666777888877554 33334449999999999999998655 999999999983200
Q ss_pred ---Cee--------------------------EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 008717 305 ---GQV--------------------------SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 305 ---~~~--------------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 355 (556)
+.. .......+|......++.+|+.+.+++++.|+.+++|+ ..+...+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE
Confidence 000 11123457888899999999999999999999999999 34444333
Q ss_pred ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-
Q 008717 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~- 434 (556)
. ...++.|+.|+|.| .++.|+..|...+.|.++..+...... ..++++++|+|+|.+|+.|+.|+.|++|.+....
T Consensus 405 ~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 405 I-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred E-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 2 35678899999999 999999999999999999888877777 4599999999999999999999999999987765
Q ss_pred ---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc---------------cCceeEEEEeecC
Q 008717 435 ---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH---------------KRARFVIRSCFGG 496 (556)
Q Consensus 435 ---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~---------------~~~~~~i~~~~~s 496 (556)
..-..+..+|+.+.||+|++++.+.+.|-.|..|..... +.+...+.- ....+.+..+.-+
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs 560 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARS 560 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEecccCCchHHHhhhh
Confidence 222234589999999999999999999999999954332 222221110 0011112233335
Q ss_pred CCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 497 FEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
.+++++|+|.+.|.|++|...--++.+.
T Consensus 561 ~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 561 HCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred hhhhhhhccccCceEEEEccccCCCccc
Confidence 6778999999999999998775555443
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=184.97 Aligned_cols=258 Identities=11% Similarity=0.139 Sum_probs=194.2
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
++..+.++.+..|...... ..-.++.-+...|.+++- ++.+|++|+.+++|.+|.+.++..-..+. ..+
T Consensus 28 i~tcgsdg~ir~~~~~sd~------e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~---Rft 96 (933)
T KOG1274|consen 28 ICTCGSDGDIRKWKTNSDE------EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA---RFT 96 (933)
T ss_pred EEEecCCCceEEeecCCcc------cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceee---eee
Confidence 3445556666666544321 111222237777877775 45589999999999999998764433333 345
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
-++.+++++.+|+++|.||.|-.|++-++.+......+.+|.++|.++.|+|++++|++.+.||.|++||+..+.+....
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999875543222
Q ss_pred c--------ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCee----eeeecCCceEEEEEcCCCCEEEEEEcCCeE
Q 008717 398 G--------QKTLRISDMAITDDGKRIISICREAAILLLDREANFE----RWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (556)
Q Consensus 398 ~--------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~----~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I 465 (556)
. .....+..++|+|+|..++..+.|+.|++|+..+... ....+...+..+.|+|+|+|||+++.||.|
T Consensus 177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I 256 (933)
T KOG1274|consen 177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI 256 (933)
T ss_pred ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence 1 1123577899999998899999999999999999872 222344559999999999999999999999
Q ss_pred EEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 466 ~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
.|||+.+. .. |.....+....| .|+..-|-.-...|...+|
T Consensus 257 ~vWnv~t~-~~------~~~~~~Vc~~aw-~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 257 LVWNVDTH-ER------HEFKRAVCCEAW-KPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEecccc-hh------ccccceeEEEec-CCCCCeeEEEeeccccccC
Confidence 99999873 21 333222232344 7777766555555555554
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.4e-20 Score=177.54 Aligned_cols=219 Identities=11% Similarity=0.171 Sum_probs=185.2
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
-.|++......|+++|+..+.|+|||+... .+.+.+.+|...|+++.++..+.|||+++..|.|.|..+.++.....
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 334444445589999999999999999843 45577889999999999999999999999999999999999988888
Q ss_pred EecC-CCceEEEEEecCCCe-EEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEccCCC-EEEEEeCCCeEEEEEC
Q 008717 355 YEKT-GVGLISCGWFLDGGG-IFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLDR 430 (556)
Q Consensus 355 ~~~~-~~~v~~i~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i~d~ 430 (556)
|... ...|.-+.|+|..++ |.+++.+|.|.+||+.+. ....+...|..+...++|+|... +|++.+.|..|.+||.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 8765 344558899996655 567889999999999864 45667777888999999999765 6888999999999999
Q ss_pred CCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC
Q 008717 431 EANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (556)
Q Consensus 431 ~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (556)
+... ...+....+.+.++|+++|.+|+.|...|.|..||++..+.++..+..|...|..+.+.. +|
T Consensus 239 ~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred ccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 9877 556667888999999999999999999999999999988789999999999987766555 44
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-20 Score=184.74 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=107.9
Q ss_pred ceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEE---EEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 263 QTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
+.+..+.+|.+.|+.+.|+| +..+|||||.|..|+||.+..+....+ -..+.+.+-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 46777889999999999999 666899999999999999984322111 12233344578899999987777777788
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~ 390 (556)
|+++|||+.+++.+..+.+|...|.++.|+.||..+++++.|..|+|||.+.
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999863
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=7.7e-20 Score=164.15 Aligned_cols=248 Identities=17% Similarity=0.299 Sum_probs=190.6
Q ss_pred EEecccCCcEEEEEEcc-CCCEEEEEeCC-------CcEEEEEeecCCe------eEEEEEec-CCCCCeEEEEeCCCCC
Q 008717 266 QILEAHSDEVWFLQFSH-DGKYLASSSKD-------QSAIIWEVKEDGQ------VSLKHRLS-GHRKPVFTVSWSPNDH 330 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp-~g~~las~s~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~v~~l~~s~~~~ 330 (556)
.+|..|.++|+.++-+| +.+.|+|+..+ -.+-||.+...-. ++.+..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35667899999999999 66677776542 2467999874321 22223333 4556899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEEe-----cCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCC-CeEEEeecccC
Q 008717 331 QLLTCGQEEAIRRWDVNSGEC-LHVYE-----KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-RELESWKGQKT 401 (556)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~ 401 (556)
.+++.. |..|.+|++..+.. +..+. .+....++-+|+| ||+.+++.+ |+++..||+++ ++...+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 999876 78999999987755 33332 2355678889999 777777764 68999999996 44556666777
Q ss_pred CCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCC---
Q 008717 402 LRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESD--- 473 (556)
Q Consensus 402 ~~v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~--- 473 (556)
..|.++.|+|+-+ +|++++.||.|+|||.+..+ ....+|..++.++.|+|. .+++++|+.|..|.+|...+-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 7899999999876 57889999999999999877 667789999999999994 578889999999999975321
Q ss_pred -------------------------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 474 -------------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 474 -------------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
...+.+|..|.+.+|. +.|.+.|.-.+|+-|.||.+.|=.+.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCC
Confidence 0134578889999888 67767777788999999999886654
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.9e-20 Score=176.44 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=195.5
Q ss_pred cEEEEEEccCCCE-EEEEeCCCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 274 EVWFLQFSHDGKY-LASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 274 ~V~~~~~sp~g~~-las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
.+.++.|+....+ +|+.+.|..+++|.-... ..+..+....+. .-.|++......|+++|+..++|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 3889999987642 334457888999976622 112233333332 334555555568999999999999999998888
Q ss_pred EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-CCCeeEEEEccCCCE-EEEEeCCCeEEEEE
Q 008717 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKR-IISICREAAILLLD 429 (556)
Q Consensus 352 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~-l~~~~~d~~I~i~d 429 (556)
.+.++.|...|+++.++....+|++++..|.|.+..+.++.....+.+. ...|.-+.|+|..+. |.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 8899999999999999999999999999999999999876655544444 346779999998774 66789999999999
Q ss_pred CCCCe---eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 430 REANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
+.... .....|..+...++|+|.. .+|++.+.|..|.+||++.. .....+.... +. -.+.| +++|.+|+.|
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~-Pl--stvaf-~~~G~~L~aG 268 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSH-PL--STVAF-SECGTYLCAG 268 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecC-Cc--ceeee-cCCceEEEee
Confidence 98876 4455789999999999955 67788899999999999876 5555554322 21 22556 9999999999
Q ss_pred eCCCcEEEEEcCC-CceeeeecCCCcccc
Q 008717 506 SEDSQNVPEILLS-ESVAAAASSLDNFVS 533 (556)
Q Consensus 506 s~dg~v~iwd~~~-~~~~~~~~~~~~~v~ 533 (556)
+..|.|+.||++. ..+++....|++.|.
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred cCCceEEEEecccCCCCceEeeeccccee
Confidence 9999999999985 457777888886643
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.3e-20 Score=168.68 Aligned_cols=243 Identities=17% Similarity=0.261 Sum_probs=184.4
Q ss_pred ccCCcEEEEEEccCC----CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEE
Q 008717 270 AHSDEVWFLQFSHDG----KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRW 344 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g----~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw 344 (556)
.|...-..++|+-+. .++|.|+.-|.|+|.|+.++ +....+.+|...|+.+.++|+. ++++++|.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 377788889998743 37888999999999999876 5678889999999999999964 789999999999999
Q ss_pred ECCCCcEEEEEe---cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe-------------------------
Q 008717 345 DVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW------------------------- 396 (556)
Q Consensus 345 d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------------- 396 (556)
++++..|+..+. +|...|.++.|+++|.+|++++.|.++++|++..+++...
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999998875 6899999999999999999999999999999974221110
Q ss_pred ---ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------------eeee----ecCCceE--EEEEcCCCCE
Q 008717 397 ---KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------------ERWI----EEEEVIT--SFSLSKDNKY 455 (556)
Q Consensus 397 ---~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------------~~~~----~~~~~i~--~v~~sp~~~~ 455 (556)
...|...|.|+.|- |+++++-+-++.|..|....-. .+.. .....|. ..+|.|-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 00111233344443 5788888889999999872111 1111 1223333 4567778899
Q ss_pred EEEEEcCCeEEEEEcCCCCc-ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 456 LLVNLINQEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 456 l~~~~~dg~I~lwd~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
||.|...|.|++||++.... ...++..+.....+-..+| +.||.+|+...+|++|.-||..+
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf-S~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF-SRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee-cccCcEEEEEeCCCcEEEEEeec
Confidence 99999999999999987633 2344444444444444566 99999999999999999998643
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=162.33 Aligned_cols=276 Identities=17% Similarity=0.206 Sum_probs=200.3
Q ss_pred cccceeecCCCCceeeecCCCCCCCCCCc-ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEE
Q 008717 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPS-QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR 312 (556)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 312 (556)
...|.|+.-++.......++...++++.+ ..-+++.+|..+|.+++||+||+.|+|+|.|..|.+||+..+. +.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ceeE
Confidence 34566766665555555555555555443 4566789999999999999999999999999999999999774 4444
Q ss_pred ecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEec-C----CCceEEEEEecCCCeEEEEeCCCcEEEE
Q 008717 313 LSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEK-T----GVGLISCGWFLDGGGIFAGMTDKSICLW 386 (556)
Q Consensus 313 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~----~~~v~~i~~~~~~~~l~~~~~dg~i~vw 386 (556)
+. .+.+|+.+.|+|.. +..+++-.+..-.+-++..+... .+.. . +....+..|.+.|+++++|...|.+.++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 43 57899999999944 44444444555556666543221 1111 1 1112233588899999999999999999
Q ss_pred ECCCCeEEEeecccC-CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eee-------eecCCceEEEEEcCC
Q 008717 387 DLDGRELESWKGQKT-LRISDMAITDDGKRIISICREAAILLLDREANF------ERW-------IEEEEVITSFSLSKD 452 (556)
Q Consensus 387 d~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~-------~~~~~~i~~v~~sp~ 452 (556)
|..+.++........ ..|..+.++..|+.++.-+.|..|+.|+.+.-. ... .-....-.+++||.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999877665554443 579999999999999999999999999987421 000 012334567899999
Q ss_pred CCEEEEEEc-CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 453 NKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 453 ~~~l~~~~~-dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
|.|++.++. -..++||.-..| .+++.+.|..+.- .+.+.| +|-...|++- ..|.|+||....
T Consensus 261 geYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~-l~DV~w-hp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEE-LLDVNW-HPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccEEEeccccceeEEEEecCCc-ceeeeecCCchhh-eeeccc-ccceeeeeec-cCCceEEEEeec
Confidence 999988774 357999999888 9999998887532 344555 8887888877 789999998654
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.9e-21 Score=198.55 Aligned_cols=246 Identities=16% Similarity=0.216 Sum_probs=193.2
Q ss_pred CCcEEEEEEccCCCE----EEEEeCCCcEEEEEeec---CCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEE
Q 008717 272 SDEVWFLQFSHDGKY----LASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRR 343 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~----las~s~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 343 (556)
...-+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.. +.||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999997765 88899999999999875 44556677788999999999999965 59999999999999
Q ss_pred EECCCCcEEEEEe--cCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCe-EEEeecccC-CCeeEEEEccCCC-EEE
Q 008717 344 WDVNSGECLHVYE--KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE-LESWKGQKT-LRISDMAITDDGK-RII 417 (556)
Q Consensus 344 wd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~-~~v~~v~~s~~g~-~l~ 417 (556)
||+..-+.-..+. .....|.+++|+.. ...|++++.+|.+.|||++.++ +..+..... ..+..++|+|++. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998654333331 24577999999974 4567788889999999998653 333333322 2588999999875 566
Q ss_pred EEeCCC---eEEEEECCCCe---eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEE
Q 008717 418 SICREA---AILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (556)
Q Consensus 418 ~~~~d~---~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i 490 (556)
+++.|. .|.+||++... ..+.+|...|.++.|++.+ ++|++++.|+.|.+|+..++ +.+..+....+..+-
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fd- 301 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFD- 301 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceee-
Confidence 666554 49999998766 5567899999999999966 89999999999999999998 899998875555444
Q ss_pred EEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 491 RSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
+.|...+-..+++++-||.|-|+.+.+..
T Consensus 302 -v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 -VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -eeecCCCcchhhhheeccceeeeeeecCC
Confidence 55523344588899999999999988655
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1e-19 Score=168.92 Aligned_cols=207 Identities=17% Similarity=0.288 Sum_probs=161.5
Q ss_pred CCcceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC-CCEEEEEeC
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQ 337 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~ 337 (556)
...+++.++.+|.+.=+.++||| ....|++|..-+.|++|...++.-..-...+.+|+..|-.++|||. ...|++||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 44678999999999999999999 2234888888889999999875433334567889999999999995 468899999
Q ss_pred CCcEEEEECCCC---cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---CeEEEeecccCCCeeEEEEcc
Q 008717 338 EEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 338 dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~ 411 (556)
||+|+|||++.+ .++.+ +.|.+.|+.+.|+.+..+|++|+.||+++|||++. +.....+..|..+|+++.|+|
T Consensus 279 DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred CceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 999999999988 34444 78999999999999888999999999999999974 333334444555999999999
Q ss_pred CC-CEEEEEeCCCeEEEEECCCCe------------------eeeeec--CCceEEEEEcCCC-CEEEEEEcCCeEEEE
Q 008717 412 DG-KRIISICREAAILLLDREANF------------------ERWIEE--EEVITSFSLSKDN-KYLLVNLINQEIHLW 468 (556)
Q Consensus 412 ~g-~~l~~~~~d~~I~i~d~~~~~------------------~~~~~~--~~~i~~v~~sp~~-~~l~~~~~dg~I~lw 468 (556)
.. ..|++++.|.+|.+||+.... ..++-| ...+..+.|++.- .++++.+.|| +.||
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 54 578888999999999986432 122233 3457778888854 4666666677 4444
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=3.7e-19 Score=166.21 Aligned_cols=206 Identities=19% Similarity=0.290 Sum_probs=169.6
Q ss_pred EecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCe----eEEEEEecCCCCCeEEEEeCCC-CCEEEEEeCCCc
Q 008717 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~ 340 (556)
.+.||+++|..++|+| +...||+||.|.+|.||.+..++. ..++..+.+|...|..+.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 777899999999999999985432 2456788999999999999995 468899999999
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee-cccCCCeeEEEEccCCCEEEEE
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
|.+||+.+|+.+.++. |...|+++.|+.||.++++++.|..|++||.+++++.... .+.......+.|-.+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999888887 9999999999999999999999999999999988776665 4444466777888899844444
Q ss_pred e---CCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCC
Q 008717 420 C---REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESD 473 (556)
Q Consensus 420 ~---~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~ 473 (556)
- .+..+.+||...-. .........|.---+.+|...++.++ .|+.|+.|.+.+.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 3 46789999987765 33334455566667888888776554 5899999999876
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=178.54 Aligned_cols=248 Identities=19% Similarity=0.291 Sum_probs=195.4
Q ss_pred CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
..+..++++++|++.|+|++|+.||+.+|+|+.|..|.+|+..-.+. .. ..|.+.|.|+.|+|-...|++|+.+
T Consensus 41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~----Lk-YSH~D~IQCMsFNP~~h~LasCsLs- 114 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI----LK-YSHNDAIQCMSFNPITHQLASCSLS- 114 (1081)
T ss_pred CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce----ee-eccCCeeeEeecCchHHHhhhcchh-
Confidence 34678999999999999999999999999999999999998764332 12 3599999999999999999999875
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE--EeecccCCCeeEEEEccCC----
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDG---- 413 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~s~~g---- 413 (556)
..-+|....... ... .....+.+++|..||.+++.|-.||+|.+-+-.+.+.. .-.++...+|.+++|+|..
T Consensus 115 dFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 115 DFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred hccccChhhhhH-Hhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 577898754332 222 23557889999999999999999999999876543322 2334455699999999963
Q ss_pred -CEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 414 -KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 414 -~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
..+++.....++.+|.+.... .......-...|+.+.++|.|++.|+.|+.+++|- +.+ -.+.++......++.
T Consensus 193 ~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G-vrLGTvg~~D~WIWt-- 268 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG-VRLGTVGEQDSWIWT-- 268 (1081)
T ss_pred cceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC-eEEeeccccceeEEE--
Confidence 468888888899999887765 33344455678899999999999999999999997 445 566777665555555
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
+.. .|++++++.|..||+|-.|++....
T Consensus 269 V~~-~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 269 VQA-KPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEE-ccCCceEEEEEccCeeehhhhHHhH
Confidence 444 8999999999999999999976543
No 155
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=159.78 Aligned_cols=212 Identities=22% Similarity=0.265 Sum_probs=159.3
Q ss_pred EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc------------------------------------EEEE
Q 008717 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE------------------------------------CLHV 354 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------~~~~ 354 (556)
..+++|.+.|++++|+.||++|++++.|++|++|+++.-. .+..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3578999999999999999999999999999999986321 1111
Q ss_pred Ee-----------------------cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 355 YE-----------------------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 355 ~~-----------------------~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
+. .|...+..+-...++.+|++++.|..|.+|+++++.+..+..... .-+..+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~-~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQS-SNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccc-cccceeeCC
Confidence 11 123344444455567889999999999999999877776665544 677889999
Q ss_pred CCCEEEEEeCCCeEEEEECCCC---e-------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC------Cc
Q 008717 412 DGKRIISICREAAILLLDREAN---F-------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD------PK 475 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~---~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~------~~ 475 (556)
+|+++++++..-.|++|..--. . ..+.+|...|..++|||+...+++.+.||+++|||+.-. ++
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999999999999986422 1 566789999999999999999999999999999997421 13
Q ss_pred ceeEE--eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 476 LVSRY--KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 476 ~~~~~--~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
.++.. ..|......+++.. +|+|+.||.+ ....++++.-++++.....
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~l-sP~g~~lA~s-~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLEL-SPSGDSLAVS-FGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred HhhcCCcchhhcCCCceEEEe-CCCCcEEEee-cCCceEEEEcccCccchhH
Confidence 33332 12322223356766 9999988754 4567999988887765443
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.2e-18 Score=173.44 Aligned_cols=271 Identities=20% Similarity=0.268 Sum_probs=206.1
Q ss_pred cCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCC---EEEEEeCCCcEEEEEeecCCee----------
Q 008717 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQV---------- 307 (556)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~---~las~s~dg~i~iwd~~~~~~~---------- 307 (556)
++.+..+.++... .. .-+.+..++||.+.|.+++|...+. +||++|.|..|+||.+.-.+..
T Consensus 165 Ggs~~~v~~~s~~-~d----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t 239 (764)
T KOG1063|consen 165 GGSKFVVDLYSSS-AD----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLT 239 (764)
T ss_pred cCcceEEEEeccC-Cc----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccc
Confidence 3344445555444 11 3467788999999999999998554 8999999999999998643200
Q ss_pred --------EEE----------EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC--cEEEE-----EecCCCce
Q 008717 308 --------SLK----------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHV-----YEKTGVGL 362 (556)
Q Consensus 308 --------~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~-----~~~~~~~v 362 (556)
... ..+.+|++.|+++.|+|.+..|++++.|.++.+|...+. --+.. +.+.....
T Consensus 240 ~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF 319 (764)
T KOG1063|consen 240 TLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGF 319 (764)
T ss_pred cccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccce
Confidence 011 123599999999999999999999999999999987654 22222 22345668
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC--------
Q 008717 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE-------- 431 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~-------- 431 (556)
+...|+|+++.+++-+..|..++|..... .......+|...|.+++|+|.|.++++.+.|.+-|+|-.-
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence 99999999999999999999999984332 2233445666699999999999999999988666654221
Q ss_pred --------------------------------------------------------------------------------
Q 008717 432 -------------------------------------------------------------------------------- 431 (556)
Q Consensus 432 -------------------------------------------------------------------------------- 431 (556)
T Consensus 400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~ 479 (764)
T KOG1063|consen 400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET 479 (764)
T ss_pred ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence
Q ss_pred -CC----------------------------------e-eeeeecCCceEEEEEcCCCCEEEEEEcCC-----eEEEEEc
Q 008717 432 -AN----------------------------------F-ERWIEEEEVITSFSLSKDNKYLLVNLINQ-----EIHLWSI 470 (556)
Q Consensus 432 -~~----------------------------------~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg-----~I~lwd~ 470 (556)
++ + .++.+|...|.+++.+|+|+++|+++... .|++|+.
T Consensus 480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t 559 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT 559 (764)
T ss_pred ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec
Confidence 00 0 12335677899999999999999998653 5999999
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+. ..++.+.+|+-.++. +.| ||||++|++.|.|.++.+|......
T Consensus 560 ~~W-~~~~~L~~HsLTVT~--l~F-Spdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 560 ANW-LQVQELEGHSLTVTR--LAF-SPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred cch-hhhheecccceEEEE--EEE-CCCCcEEEEeecCceEEeeeeeccc
Confidence 887 778899999987554 777 9999999999999999999875443
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.3e-18 Score=163.43 Aligned_cols=281 Identities=15% Similarity=0.246 Sum_probs=205.0
Q ss_pred ceeecCCCCceeeecCCCCCCCC--CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee--------c---
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNR--IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------E--- 303 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~--------~--- 303 (556)
.+++.+.|..+.+|.-....... .....+..|..|...|+++.|+|+|..||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 35677888888888755433222 2345677889999999999999999999999999999999876 2
Q ss_pred --CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC
Q 008717 304 --DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (556)
Q Consensus 304 --~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 381 (556)
.......+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 223556678889999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cEEEEECCCCeEEEeec----------ccCC-------------CeeEEEEccCCCEEEEEeC----C-----CeEEEEE
Q 008717 382 SICLWDLDGRELESWKG----------QKTL-------------RISDMAITDDGKRIISICR----E-----AAILLLD 429 (556)
Q Consensus 382 ~i~vwd~~~~~~~~~~~----------~~~~-------------~v~~v~~s~~g~~l~~~~~----d-----~~I~i~d 429 (556)
..+.+.+....+..... +..+ -...++|+|+|..+++.+. + +..++|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfs 267 (434)
T KOG1009|consen 188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS 267 (434)
T ss_pred ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeec
Confidence 77777664322111000 0001 2356789999998887532 2 2345665
Q ss_pred CCCCe---eeeeecCCceEEEEEcC------------------CCCEEEEEEcCCeEEEEEcCCCCcceeEE-eCccCce
Q 008717 430 REANF---ERWIEEEEVITSFSLSK------------------DNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRAR 487 (556)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~v~~sp------------------~~~~l~~~~~dg~I~lwd~~~~~~~~~~~-~~~~~~~ 487 (556)
....+ ..+.....+...+.|+| -+-.+++++ .+.+++||.++. .++... .-|-..+
T Consensus 268 rk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~-~P~~~v~nihy~~i 345 (434)
T KOG1009|consen 268 RKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL-EPLAVVDNIHYSAI 345 (434)
T ss_pred cccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc-cceEEEeeeeeeee
Confidence 44332 22333344444444444 223355555 567999999887 555554 3344454
Q ss_pred eEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 488 FVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 488 ~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
+. .+| ++||.+++..|.||-..+-.+...++-
T Consensus 346 TD--iaw-s~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 346 TD--IAW-SDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cc--eee-cCCCcEEEEeccCCceEEEEEcchhcc
Confidence 33 566 999999999999998888877766654
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=7.3e-19 Score=160.67 Aligned_cols=251 Identities=19% Similarity=0.278 Sum_probs=196.6
Q ss_pred EecccCCcEEEEEEcc-----CCCEEEEEeCCCcEEEEEeecCCeeEEEEEec--CCCCCeEEEEeCCC----CCEEEEE
Q 008717 267 ILEAHSDEVWFLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLLTC 335 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp-----~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 335 (556)
..++|+.+|..++|++ ....+|+++. ..+.+|+...++....++.+. .|+.....++|+-+ ..++|++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3467899999999996 3346677654 589999998665445555443 36777888899764 3588999
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeec---ccCCCeeEEEEcc
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITD 411 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~v~~s~ 411 (556)
+.-|.|+|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++||+++.......+ .|...|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 99999999999999999999999999999999995 4788999999999999999877766654 3555899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-----e-------------------------eeeecCCceEEEEEcCCCCEEEEEEc
Q 008717 412 DGKRIISICREAAILLLDREANF-----E-------------------------RWIEEEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~-----~-------------------------~~~~~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
+|.++++++.|.+|++|++...+ . ....|...|-|+.|- |.++++=+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99999999999999999998432 0 011233444444453 678999888
Q ss_pred CCeEEEEEcCC-C------------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 462 NQEIHLWSIES-D------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 462 dg~I~lwd~~~-~------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
++.|..|.... . ...+.++.-....++.++..| .|-++.||.|...|.|++||+....+
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCC
Confidence 99999998621 1 123344555566778888888 88899999999999999999997665
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-17 Score=165.62 Aligned_cols=244 Identities=13% Similarity=0.170 Sum_probs=189.8
Q ss_pred eEEecccC-CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 265 LQILEAHS-DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 265 ~~~l~~h~-~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
..++.|+. ..|.+++|++ |..|.+.+.+|+|.-||+.+. +....+....++|++++.+|.+..++.|+.||.+..
T Consensus 61 ~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred eEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 34556655 5899999994 556888889999999999876 455677778899999999999999999999998888
Q ss_pred EECCCCcEEE--EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe--------ecccCCCeeEEEEccCC
Q 008717 344 WDVNSGECLH--VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW--------KGQKTLRISDMAITDDG 413 (556)
Q Consensus 344 wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~v~~s~~g 413 (556)
.+...++... .+....+.+.++.|+|++..+++|+.||.|++||...+..... .....--|+++.|-.++
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 8887776543 3445578999999999999999999999999999975433221 11122247888888665
Q ss_pred CEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc---ceeEEeCccCcee
Q 008717 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK---LVSRYKGHKRARF 488 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~---~~~~~~~~~~~~~ 488 (556)
.|++|...|+|.+||...+. ..+..|.+.|.+++..+++.++++++.|+.|..|...+... .......|...+.
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccce
Confidence 68999999999999999988 66778999999999999999999999999998888766522 2233345655544
Q ss_pred EEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 489 VIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 489 ~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.+ +. .+ ..+++|+.|..+.+-....
T Consensus 296 s~--av-~~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 296 SM--AV-IE--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ee--ee-ec--ceEEecceeeEEEEccccc
Confidence 42 22 22 3888999999888865443
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.8e-18 Score=161.66 Aligned_cols=236 Identities=14% Similarity=0.242 Sum_probs=173.6
Q ss_pred CCCEEEE---EeCCCcEEEEEeecCCee-EEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCC-------c
Q 008717 283 DGKYLAS---SSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG-------E 350 (556)
Q Consensus 283 ~g~~las---~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~ 350 (556)
+.++||. ++..|-..+.-+...+.. ...-.+.+|+++|..++|+| +.+.||+||.|.+|.||++-.+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 4455554 233344444444322211 12234678999999999999 6778999999999999998543 4
Q ss_pred EEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
.+..+.+|...|--++|+|. .+.|++++.|.+|.+||+.+++...... |...|+++.|+.||.++++++.|..|+|||
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 57788899999999999994 5678899999999999999877554444 555999999999999999999999999999
Q ss_pred CCCCee--eeeecC-CceEEEEEcCCCCEEEEEE---cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 430 REANFE--RWIEEE-EVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 430 ~~~~~~--~~~~~~-~~i~~v~~sp~~~~l~~~~---~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
.++++. .-..|. .....+.|-.+|..+-+|. ++..+-+||..+-.+++....-.... .+-.-|+.+|.+.|+
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVY 279 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEE
Confidence 999982 223443 3456677888998555553 36789999987664444333322222 144677799988876
Q ss_pred E-eeCCCcEEEEEcCCCce
Q 008717 504 S-GSEDSQNVPEILLSESV 521 (556)
Q Consensus 504 s-gs~dg~v~iwd~~~~~~ 521 (556)
. |-.|+.|+.|.+.+..+
T Consensus 280 l~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred EEecCCcceEEEEecCCCc
Confidence 5 55699999999998873
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.7e-18 Score=164.82 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=202.7
Q ss_pred cceeecCCCCceeeecC--CCCCCCCC-----CcceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCee
Q 008717 236 SCLFHNTSDSDFSLYSD--HQCGRNRI-----PSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV 307 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d--~~~~~~~~-----~~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~ 307 (556)
...||++....+.+..| ++.+.|++ ....+..+..|..+|.++.|+| +...+++.|.||+|++-|++.. ..
T Consensus 191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~-i~ 269 (498)
T KOG4328|consen 191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN-IS 269 (498)
T ss_pred EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch-hh
Confidence 34577777644433333 23344544 2345677889999999999999 5668999999999999999853 22
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICL 385 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~v 385 (556)
..+..+......+..+.|+.+...++++..=|...+||.+++.. ...+.-|...|.+++++| ...++++++.|++.+|
T Consensus 270 e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 270 EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 33334443455677888988888888888888999999988654 566667878999999999 4567899999999999
Q ss_pred EECCC---Ce-EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC---C-Ce-eeeeecCC------ceEEEEEc
Q 008717 386 WDLDG---RE-LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE---A-NF-ERWIEEEE------VITSFSLS 450 (556)
Q Consensus 386 wd~~~---~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~---~-~~-~~~~~~~~------~i~~v~~s 450 (556)
||++. +. .......|...|.+..|||++-.|++.+.|..|+|||.. . .. ...+.|.. ......|.
T Consensus 350 WD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 350 WDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWD 429 (498)
T ss_pred eehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeC
Confidence 99974 22 112223344489999999998889999999999999985 2 22 34444432 23456899
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC-ceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcC
Q 008717 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFGGFEQA-FIASGSEDSQNVPEILL 517 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~ 517 (556)
|+..++++|-.-..|-|+|-..+ +.+..+..... .+.. +.-++|-+. +++.++..|.|+||.-.
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~-q~v~el~~P~~~tI~~--vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGG-QMVCELHDPESSTIPS--VNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCC-EEeeeccCcccccccc--ceeecccccceeccCCccceEEEEecC
Confidence 99999999999899999998777 77777654443 3333 333488887 55555668899998644
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.4e-19 Score=173.81 Aligned_cols=254 Identities=15% Similarity=0.161 Sum_probs=194.9
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee-----cCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK-----EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
++..|.+.|..++|.|....|++|+.||++.+|++. ....++++.+|.+|.++|.|++..+++.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 677899999999999999999999999999999993 223467889999999999999999999999999999999
Q ss_pred EEEECCCC----------cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-CCCeeEEEEc
Q 008717 342 RRWDVNSG----------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAIT 410 (556)
Q Consensus 342 ~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~s 410 (556)
+.|++... .....+.+|...++.+++++....|++++.||+++.|+........+.... .+...++.+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeec
Confidence 99965311 234567799999999999999999999999999999998765442222221 1244555554
Q ss_pred cCC-CEEEEEeCCCeEEEEECCCCe-eeeee--------cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 411 DDG-KRIISICREAAILLLDREANF-ERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 411 ~~g-~~l~~~~~d~~I~i~d~~~~~-~~~~~--------~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
... ...++...-+.--++|..... ..+.. ....+.-+.++|.+.+.+++..|+.|+++|..++ +++...
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~ 527 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSM 527 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccchhe
Confidence 332 122222222223333333333 22221 1245778899999999999999999999999999 999999
Q ss_pred eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
..|...+.. .++ .|+|-+|++|+.||.+.+|.+.....+..
T Consensus 528 ~a~~~svts--lai-~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 528 VAHKDSVTS--LAI-DPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeccceecc--eee-cCCCceEEeecCCceeehhhccchheeec
Confidence 999988666 444 88999999999999999999877665443
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-19 Score=190.79 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=186.8
Q ss_pred EEEEEccCCC-EEEEE----------eCCCcEEEEEeecCCe---eEEEEEecCCCCCeEEEEeCCCCCE----EEEEeC
Q 008717 276 WFLQFSHDGK-YLASS----------SKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQ----LLTCGQ 337 (556)
Q Consensus 276 ~~~~~sp~g~-~las~----------s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~----l~s~~~ 337 (556)
..++|+|.+. ++|+| +.+.++.||.+..... .+..-.+. -....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578999886 56654 3356677777653211 12222222 3456789999997765 888889
Q ss_pred CCcEEEEECCC---C---cEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeE-EEe-ecccCCCeeEEE
Q 008717 338 EEAIRRWDVNS---G---ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGREL-ESW-KGQKTLRISDMA 408 (556)
Q Consensus 338 dg~i~iwd~~~---~---~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~-~~~-~~~~~~~v~~v~ 408 (556)
||.|.+||... + ..+.....|.+.|..+.|++. ++.+++|+.||.|.|||+..-+. ... .......|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999864 2 245667789999999999995 55999999999999999975222 111 122334799999
Q ss_pred EccCC-CEEEEEeCCCeEEEEECCCCe--eeeee--cCCceEEEEEcCCC-CEEEEEEcCC---eEEEEEcCCCCcceeE
Q 008717 409 ITDDG-KRIISICREAAILLLDREANF--ERWIE--EEEVITSFSLSKDN-KYLLVNLINQ---EIHLWSIESDPKLVSR 479 (556)
Q Consensus 409 ~s~~g-~~l~~~~~d~~I~i~d~~~~~--~~~~~--~~~~i~~v~~sp~~-~~l~~~~~dg---~I~lwd~~~~~~~~~~ 479 (556)
|+..- ..|++++.+|.+.|||++..+ ..+.. ....+..++|+|+. ..|++++.|. .|.+||++....+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 99754 467888899999999999986 33322 23457899999987 4566666553 6999999977688999
Q ss_pred EeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcc
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNF 531 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 531 (556)
+++|..++.. +.|...|..++++++.|+.|.+|+..+++.+.......++
T Consensus 249 ~~~H~~Gils--lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 249 LEGHQRGILS--LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW 298 (1049)
T ss_pred hcccccceee--eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence 9999999666 4553456699999999999999999999988776654433
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=154.95 Aligned_cols=248 Identities=16% Similarity=0.195 Sum_probs=189.5
Q ss_pred CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
.|+.+..++++|.+.|+++.|-.++. |.+|..-|.|++|++.+.. ....+. .|...|+.+.--|+ ..+.+-+.|
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd 76 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRD 76 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCC
Confidence 36678888999999999999988776 8899999999999999763 333444 56778888888887 678888999
Q ss_pred CcEEEEECCCCcEEEE--------------Ee---------------------------------------cCCCceEEE
Q 008717 339 EAIRRWDVNSGECLHV--------------YE---------------------------------------KTGVGLISC 365 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~--------------~~---------------------------------------~~~~~v~~i 365 (556)
+.+.+|++.-+..+.. +- ...+.+.+.
T Consensus 77 ~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 9999999875322110 00 012344555
Q ss_pred EEec-CCC--eEEEEeCCCcEEEEECCCCe----------EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 366 GWFL-DGG--GIFAGMTDKSICLWDLDGRE----------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 366 ~~~~-~~~--~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
.|.. ++. .+++|..+|.+.+||+.++. +..-...+..+|.++.|.+.-..=++|+.+..+..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 4332 233 35678889999999998741 1222234455899999998766677888888899998875
Q ss_pred Ce------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 433 NF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 433 ~~------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
.. ....-.+..+..+.+-||++.+|+++.|+.|++|+.++. .++..++-|...+.. ++| +|+..++|++|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~--vAf-spd~~lmAaas 312 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNA--VAF-SPDCELMAAAS 312 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeE--EEe-CCCCchhhhcc
Confidence 43 222233456889999999999999999999999999999 999999999988655 666 99999999999
Q ss_pred CCCcEEEEEc
Q 008717 507 EDSQNVPEIL 516 (556)
Q Consensus 507 ~dg~v~iwd~ 516 (556)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1e-17 Score=159.10 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=160.3
Q ss_pred eEEEEeCC-------CCCEEEEEeCCCcEEEEECCCCc---EEEE------------------EecCCCceEEEEEecC-
Q 008717 320 VFTVSWSP-------NDHQLLTCGQEEAIRRWDVNSGE---CLHV------------------YEKTGVGLISCGWFLD- 370 (556)
Q Consensus 320 v~~l~~s~-------~~~~l~s~~~dg~i~iwd~~~~~---~~~~------------------~~~~~~~v~~i~~~~~- 370 (556)
-.|+.|.. .|+++|.|+.|..|.|||+.--. +..+ -.+|...|..+.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 36899999999999999986321 1111 1246777778888764
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEE
Q 008717 371 GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANF--ERWIEEEEVITSF 447 (556)
Q Consensus 371 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v 447 (556)
.+.|++|+.|.+|++||+.+++......++...|.++.|+|. ...+++|+.|++|.++|.+... .......+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 467889999999999999998888888888889999999996 4689999999999999999643 4445567889999
Q ss_pred EEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 448 SLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 448 ~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+|.|.. ..+++++.||+++-+|++...+++.+++.|.+++..+. +......++++++.|+.|++|++.....
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~--~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS--VNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE--ecCCCCcceeeccccceEEEEeecCCCC
Confidence 999966 45777788999999999988899999999999987744 4334556899999999999999875544
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=5.7e-16 Score=154.72 Aligned_cols=273 Identities=11% Similarity=0.122 Sum_probs=179.2
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
.+..+..+.+|+-.... ....++.+. +.+....++++|++++|++++ .++.|.+|++...+.+....... ..+
T Consensus 7 ~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 7 ASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34556677777643211 113444454 345677899999999987664 57889999997444444344332 334
Q ss_pred CeEEEEeCCCCCEEEEEeC-CCcEEEEECCC-C---cEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCC-C
Q 008717 319 PVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNS-G---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG-R 391 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~-~ 391 (556)
....++|+|+++++++++. ++.|.+|++++ + +.+..+. +......++++|+++++++++ .++.|.+||+++ +
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 5678999999999988875 78999999964 3 2233332 223467788999999987655 568999999975 3
Q ss_pred eEEE-----eecccCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCC--Cee----eeee------cCCceEEEEEcCCC
Q 008717 392 ELES-----WKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREA--NFE----RWIE------EEEVITSFSLSKDN 453 (556)
Q Consensus 392 ~~~~-----~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~I~i~d~~~--~~~----~~~~------~~~~i~~v~~sp~~ 453 (556)
.+.. ........+..++|+|+|+++++++. ++.|.+||+.. +.. .... +......+.++|+|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 2211 11112235788999999999988776 89999999974 221 1111 11123468899999
Q ss_pred CEEEEEEc-CCeEEEEEcCCCCcceeEEeCccCc-eeEEEEeecCCCCcEEEEeeC-CCcEEEEEcC--CCce
Q 008717 454 KYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRA-RFVIRSCFGGFEQAFIASGSE-DSQNVPEILL--SESV 521 (556)
Q Consensus 454 ~~l~~~~~-dg~I~lwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~sgs~-dg~v~iwd~~--~~~~ 521 (556)
++++++.. ++.|.+|++... ....++.++... .....+.+ +|+|++|++++. +++|.+|++. ++.+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~-~~~~~~~~~~~~~~~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSED-GSVLSFEGHQPTETQPRGFNI-DHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCC-CCeEEEeEEEeccccCCceEE-CCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 99999864 689999999654 212222222110 01122455 899999998776 8999999875 4454
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=3e-17 Score=149.88 Aligned_cols=281 Identities=15% Similarity=0.177 Sum_probs=197.4
Q ss_pred HHHHHHHhhccccceeecCCCCceeeecCCCCCC-----CCCCcceeEEec-ccCCcEEEEEEc-------cCCCEEEEE
Q 008717 224 HLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGR-----NRIPSQTLQILE-AHSDEVWFLQFS-------HDGKYLASS 290 (556)
Q Consensus 224 ~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~~~~l~-~h~~~V~~~~~s-------p~g~~las~ 290 (556)
..++-........|++.++.+..+.+|....-.. ...+.+...+++ .....|...+|- |+..++|+.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3344444444556788888887777775332111 111122222222 234568888887 577899999
Q ss_pred eCCCcEEEEEeecCCeeEEEEEecCCCC---CeEEEEeCCCCCEEEEEeCCCcEEEEEC-CCCcEEEE---Ee----cCC
Q 008717 291 SKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQEEAIRRWDV-NSGECLHV---YE----KTG 359 (556)
Q Consensus 291 s~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~---~~----~~~ 359 (556)
+.+.-|++||.-++. .+.......|.. +..+++|+|||.+|++| ...+|+++|+ +.|+.-.. +. +..
T Consensus 130 sr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999998763 222222223433 34689999999999875 5579999999 56643221 11 236
Q ss_pred CceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCCe---
Q 008717 360 VGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREANF--- 434 (556)
Q Consensus 360 ~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~I~i~d~~~~~--- 434 (556)
+.+.+++|+| +...+++|+....+-+|.-.++....+...|.+.|+.+.|.++|+.|.+|+. |..|..||++...
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 7788999999 5668999999889989988877777777788889999999999999999875 6789999999876
Q ss_pred eeeeecCC-c--eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 435 ERWIEEEE-V--ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 435 ~~~~~~~~-~--i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
..+..|.. . -.-+...|++++|++|+.||.|++||+++....+..+..+...+.. +.+ +|--.++++++...
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNg--vsl-nP~mpilatssGqr 362 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNG--VSL-NPIMPILATSSGQR 362 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccc--eec-CcccceeeeccCce
Confidence 22222322 1 2235668899999999999999999999854778888888877655 344 77777777776543
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=6.2e-16 Score=158.60 Aligned_cols=255 Identities=25% Similarity=0.377 Sum_probs=201.5
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEe-CCCCC-EEEEEeC-CCcE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSW-SPNDH-QLLTCGQ-EEAI 341 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~-dg~i 341 (556)
..+..|...|.++.|.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3567899999999999999999999999999999998653 2445555533 36777777 88887 5555455 8999
Q ss_pred EEEECCC-CcEEEEEecCCCceEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EEEE
Q 008717 342 RRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIIS 418 (556)
Q Consensus 342 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~ 418 (556)
.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++...........+...|.+++|+|++. .+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9999988 7888889999999999999999998888885 99999999987555444444666999999999998 5555
Q ss_pred EeCCCeEEEEECCCCe--e-eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 419 ICREAAILLLDREANF--E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
++.|+.|++||...+. . ....|.... ...|+|++.++++++.|+.+++|++......+..+.+|...+.. ..|
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~- 292 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS--VAF- 292 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE--EEE-
Confidence 5899999999988655 2 355565554 33899999899999999999999998763324555677666544 345
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
.|++..+++++.|+.+.+|+..+........
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 8888888889999999999988877655544
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.3e-18 Score=154.39 Aligned_cols=186 Identities=15% Similarity=0.256 Sum_probs=147.7
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe--cCC-
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYE--KTG- 359 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~- 359 (556)
..+|++-..|+|++||..++ ..+..+++++..+..+.|.. ....+.+|+.||+|++||+++......+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888889999999999986 45677888888888999976 45789999999999999998876544443 333
Q ss_pred CceEEEEEecCCCeEEEEeC----CCcEEEEECCC-Ce-EEEeecccCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCC
Q 008717 360 VGLISCGWFLDGGGIFAGMT----DKSICLWDLDG-RE-LESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREA 432 (556)
Q Consensus 360 ~~v~~i~~~~~~~~l~~~~~----dg~i~vwd~~~-~~-~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~I~i~d~~~ 432 (556)
.+..+++-+..++.+++|+. +-.|.+||++. ++ +..+...|...|+++.|+|. .+.|++|+.||-|.+||+..
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 45667776667777777753 56799999985 33 67777777779999999995 46899999999999999987
Q ss_pred Ce-----eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC
Q 008717 433 NF-----ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 433 ~~-----~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~ 473 (556)
.. ...+.+...|.++.|..++ +.|.+-+...+..+|++..+
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 64 5667788889999998877 44667777888888887654
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=4.8e-17 Score=146.45 Aligned_cols=242 Identities=18% Similarity=0.238 Sum_probs=180.5
Q ss_pred CcEEEEEEcc---CCCEEEEEeC----CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC-----EEEEEeCCCc
Q 008717 273 DEVWFLQFSH---DGKYLASSSK----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-----QLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp---~g~~las~s~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-----~l~s~~~dg~ 340 (556)
-.+.++.||. .+.+||.|+. .+.|.|-.+...........-..|.-+++.+.|.|+.. +||+++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3577888884 3447888873 46777777663322111122246899999999999763 555544 38
Q ss_pred EEEEECCCCc--E--EEEE-----ecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCC---eEEEeecccCCCeeEE
Q 008717 341 IRRWDVNSGE--C--LHVY-----EKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDM 407 (556)
Q Consensus 341 i~iwd~~~~~--~--~~~~-----~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v 407 (556)
+++|.+...+ . ...+ ..+..++++..|+. +-+++.+++-|.+..+||++++ .+++....|...|.++
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 9999987422 1 1111 13467899999987 7789999999999999999864 3566666677799999
Q ss_pred EEccCCC-EEEEEeCCCeEEEEECCCCe-eeeee----cCCceEEEEEcCC-CCEEEEEEcC-CeEEEEEcCCCCcceeE
Q 008717 408 AITDDGK-RIISICREAAILLLDREANF-ERWIE----EEEVITSFSLSKD-NKYLLVNLIN-QEIHLWSIESDPKLVSR 479 (556)
Q Consensus 408 ~~s~~g~-~l~~~~~d~~I~i~d~~~~~-~~~~~----~~~~i~~v~~sp~-~~~l~~~~~d-g~I~lwd~~~~~~~~~~ 479 (556)
+|...+. .+++.+.||.|++||++... .+.+. ...+...++|++. -+++|+-..| ..|.|.|++....++.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9999664 78999999999999999987 23222 1456788999985 4778876665 46999999988789999
Q ss_pred EeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+++|...+..|.+.. .....|++++.|..+.|||+..
T Consensus 283 L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hhcCcccccceEecC--CCCceeeecCCcceEEEEeccc
Confidence 999999988865543 3567899999999999999975
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.6e-17 Score=162.92 Aligned_cols=238 Identities=17% Similarity=0.246 Sum_probs=172.4
Q ss_pred EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEE---------------------
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--------------------- 367 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--------------------- 367 (556)
+...+.+|++.|.++...|.|.+|++|+.||+|+||.+.||+|+.++.. .+.|.|++|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 4456789999999999999999999999999999999999999887642 223444444
Q ss_pred -----------------------------------------------------------ecCCCeEEEEeCC---CcEEE
Q 008717 368 -----------------------------------------------------------FLDGGGIFAGMTD---KSICL 385 (556)
Q Consensus 368 -----------------------------------------------------------~~~~~~l~~~~~d---g~i~v 385 (556)
+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 4444444443322 23444
Q ss_pred EECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCC
Q 008717 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (556)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 463 (556)
+++..+..+.-+....+.|.++.|+|...++++++. ..|+|||+.... ..+......|.+++++|.|..|++|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 444433322222233347899999999988888765 689999998866 55666778899999999999999999999
Q ss_pred eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE------cCCCceee---eecCCCcc---
Q 008717 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI------LLSESVAA---AASSLDNF--- 531 (556)
Q Consensus 464 ~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd------~~~~~~~~---~~~~~~~~--- 531 (556)
.+..+|+.-..++.+++..|...+.. ++| ++.-.++++|+.||++.|+. +....++. .+.+|...
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~--Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~ 706 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRS--VAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL 706 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhh--hhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence 99999998666899999999988554 555 88888999999999999984 22222222 23333321
Q ss_pred -cccceeeEeEeehhhhHhhhh
Q 008717 532 -VSSYFCLHLFSFYLYSATMLK 552 (556)
Q Consensus 532 -v~~~~~~~~~~~~~~s~~~~~ 552 (556)
|. ..|.|.--+++|+|...+
T Consensus 707 gVL-d~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 707 GVL-DTIWHPRQPWLFSAGADG 727 (733)
T ss_pred ceE-eecccCCCceEEecCCCc
Confidence 22 234555567888886543
No 172
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=1.5e-16 Score=145.35 Aligned_cols=239 Identities=11% Similarity=0.129 Sum_probs=184.5
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.+.--..+|+|.+|++|+..+|.+.....|.||.....+..+..+++..|+..|++++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445678999999999999999999999999999876657889999999999999999999999999999999999998
Q ss_pred -CCCc--EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----EEeecccCCCeeEEEEccCCCEEEEE
Q 008717 347 -NSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 347 -~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
..++ +...+..++...+++.|+|.++.|++|+.-..|.+|-.+...- +.+.....+.|.++.|+|++-++++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4443 4455667788899999999999999999999999998865332 22333334479999999999999999
Q ss_pred eCCCeEEEEECCCCe--------------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE
Q 008717 420 CREAAILLLDREANF--------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~--------------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~ 479 (556)
+.|+..++|..--.. ..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....+.+..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999999998742110 111245678999999999999999999999999998765334444
Q ss_pred EeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
......+. ..+.|.++ +.++.+++|.
T Consensus 245 ~~~~~lP~--ls~~~ise--~~vv~ag~~c 270 (361)
T KOG1523|consen 245 VATAQLPL--LSVSWISE--NSVVAAGYDC 270 (361)
T ss_pred hhhccCCc--eeeEeecC--CceeecCCCC
Confidence 43333332 22444222 2344455553
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.2e-15 Score=154.54 Aligned_cols=250 Identities=26% Similarity=0.374 Sum_probs=195.2
Q ss_pred eeEEecccCC-cEEEEEE-ccCCC-EEEEEeC-CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-C
Q 008717 264 TLQILEAHSD-EVWFLQF-SHDGK-YLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-E 338 (556)
Q Consensus 264 ~~~~l~~h~~-~V~~~~~-sp~g~-~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d 338 (556)
....+.++.. .+..+.+ ++++. .++..+. |+.+.+|+... .......+..|...|..++|+|++..+++++. |
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCC
Confidence 5666666443 7777777 88888 5555444 99999999985 12566778899999999999999999998886 9
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEE-eecccCCCeeEEEEccCCCEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELES-WKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l 416 (556)
+.+++|++.++..+..+..|...+.+++|+|++. .+++++.|+.|.+||...+.... ....+.... ...|+|++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (466)
T COG2319 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLL 256 (466)
T ss_pred CceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEE
Confidence 9999999999889999999999999999999998 45555899999999988555544 344443343 33899999889
Q ss_pred EEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe--CccCceeEEE
Q 008717 417 ISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK--GHKRARFVIR 491 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~--~~~~~~~~i~ 491 (556)
++++.|+.+++||..... .....|...+.++.|+|++..+++++.|+.+.+||..+. ....... .|...+..
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 333 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSS-- 333 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEE--
Confidence 999999999999998665 222467889999999998888888998988999998877 5555554 67664444
Q ss_pred EeecCCCCcEEEEe-eCCCcEEEEEcCCCc
Q 008717 492 SCFGGFEQAFIASG-SEDSQNVPEILLSES 520 (556)
Q Consensus 492 ~~~~s~~~~~l~sg-s~dg~v~iwd~~~~~ 520 (556)
+.+ .+++..++.+ ..|+.+.+|++....
T Consensus 334 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 334 LSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 444 4554555555 688999999998776
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=8.6e-17 Score=164.88 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=181.3
Q ss_pred cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCe--e-EEEEEecCCCCCeEEEEeCCCC--CEEEEEeCCCcEEEE
Q 008717 271 HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ--V-SLKHRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRW 344 (556)
Q Consensus 271 h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iw 344 (556)
-...|.|+.|+| +..++|.|..+|.|.+||+..+.. . ........|..+|+.+.|-.+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 777888999999999999986543 1 1222345689999999997754 449999999999999
Q ss_pred ECCCCcE------EEEEe------cCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC---Ce-----EEEeecccCCC
Q 008717 345 DVNSGEC------LHVYE------KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG---RE-----LESWKGQKTLR 403 (556)
Q Consensus 345 d~~~~~~------~~~~~------~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~---~~-----~~~~~~~~~~~ 403 (556)
+++.-.. ..... .....+++++|.+ +-..|++|+.+|.|..-+-.+ .. .......|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8864321 11111 1245678999988 667899999999988744432 11 12233345569
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEECCC-Ce--eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC-Cccee
Q 008717 404 ISDMAITDDGKRIISICREAAILLLDREA-NF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD-PKLVS 478 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~~I~i~d~~~-~~--~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~-~~~~~ 478 (556)
|+++.++|-+..++..+.|.+|+||.... .. ..+..+...+++++|||.. ..++++..||.|.+||+... ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 99999999887766666699999999873 33 4444556669999999976 56777888999999999543 24555
Q ss_pred EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+...+.. .....+++++|+.|++|...|++++|++...
T Consensus 481 s~~~~~~---~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 481 SQKVCSP---ALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccc---ccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5555533 3445666999999999999999999999643
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=152.40 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=186.8
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC---CeeEEEEEe-cCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
.+-+.+|.+.|.++.||.++++||+|+.|..+++|++... ...+++... ..|...|.|++|.....++++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3456789999999999999999999999999999998631 111222222 245688999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecC--CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--EE-EeecccCCCeeEEEEccCC-C
Q 008717 341 IRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LE-SWKGQKTLRISDMAITDDG-K 414 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~-~~~~~~~~~v~~v~~s~~g-~ 414 (556)
|...|+.+.+.+..+... .+.|+.+..+|-.+.|++.+.++.|.+||.+..+ .. ............+.|+|.. .
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999999888777533 4689999999999999999999999999997533 11 1122223368889999965 4
Q ss_pred EEEEEeCCCeEEEEECCCCee------eeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC
Q 008717 415 RIISICREAAILLLDREANFE------RWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~~------~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
+|++.+..+-+.+||.+.... .+.+. ...-.++.|+|+|..+++--....-.+||+.+....+..+. |..
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~ 287 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNP 287 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCC
Confidence 677888889999999987651 11122 22346789999999988877666777899887523444443 222
Q ss_pred -----ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 486 -----ARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 486 -----~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
..+.-.+|| .+...|++|+.+-.|++|.+.
T Consensus 288 ~GY~N~~T~KS~~F--~~D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTF--IDDYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred Ccceeeeeeeeeee--ecceeeeccCcccceEEEecC
Confidence 222233455 345569999999999999875
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.4e-16 Score=138.58 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=173.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecC-------CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
..|.+-+|+|.+++|++|+.+|.|-+..+.+- .....+...++|+++|+.++|. ..+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 34667789999999999999999999998631 0113445568999999999998 457777665 9999998
Q ss_pred CCCCcE------EEEE--e-----cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 346 VNSGEC------LHVY--E-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 346 ~~~~~~------~~~~--~-----~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
.+.... +... . ..-..|+++...|..+.+++++.|+.++.||++++++.....+|...|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 753221 0001 0 11245788999998888888889999999999999998888888889999998555
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-eeeeec-----------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 413 GKRIISICREAAILLLDREANF-ERWIEE-----------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~-~~~~~~-----------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
...+++|+.||++++||.++.+ ...++. ..+|.+++. +..+|++|+ ...+.+|++++. ++...+
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss-e~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS-ESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC-CceEEE
Confidence 6679999999999999999988 333321 234555555 466888776 667999999987 676666
Q ss_pred eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.-... +.. +.| +.+.++++++.+.|.-|.+...
T Consensus 244 pipa~-v~~--v~F---~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 244 PIPAR-VHL--VDF---VDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred ecccc-eeE--eee---ecceEEEeccccceeeeeeccE
Confidence 43222 222 555 5677888998889999987643
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=1.2e-16 Score=150.16 Aligned_cols=251 Identities=16% Similarity=0.194 Sum_probs=186.2
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecC------CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 272 ~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
..+|..+.|.+++. .||||+.|..|+||.+..+ ..+.....+..|..+|+++.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999999777 9999999999999998743 2455667889999999999999999999999999999999
Q ss_pred ECC--------C--------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEE
Q 008717 345 DVN--------S--------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA 408 (556)
Q Consensus 345 d~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~ 408 (556)
... + ......+.+|...|..++|+|++.++++++.|..+++||+..+.+......|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 865 2 123455668899999999999999999999999999999999999998888888999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCe-eee--------------------eecCC----ceEEEEEcCCCCEEEEEEc--
Q 008717 409 ITDDGKRIISICREAAILLLDREANF-ERW--------------------IEEEE----VITSFSLSKDNKYLLVNLI-- 461 (556)
Q Consensus 409 ~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~--------------------~~~~~----~i~~v~~sp~~~~l~~~~~-- 461 (556)
|.|-++++++-+.|...+.+++.... ... .-|+. -...++|+|||.++++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999988877777665443 000 01111 1345789999999987642
Q ss_pred --C-----CeEEEEEcCCCCcceeEEeCccCceeEEEEee---------------cCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 462 --N-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCF---------------GGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 462 --d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~---------------~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
. +..++|+-....++...+.........++++. .-|-+-.+|.+ ..+.|+|||.++-
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccc
Confidence 1 23456654443345555554444433333321 11222233444 4567999998886
Q ss_pred ceee
Q 008717 520 SVAA 523 (556)
Q Consensus 520 ~~~~ 523 (556)
.+..
T Consensus 332 ~P~~ 335 (434)
T KOG1009|consen 332 EPLA 335 (434)
T ss_pred cceE
Confidence 6544
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.1e-16 Score=142.41 Aligned_cols=230 Identities=15% Similarity=0.252 Sum_probs=172.4
Q ss_pred cceeecCCCCceeeec-CCCCCCCCCCcceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeec------CCe
Q 008717 236 SCLFHNTSDSDFSLYS-DHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKE------DGQ 306 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~------~~~ 306 (556)
.-+.+.+.+..+.+|+ +..... -.+....+.|.+.|+.+.|.+ =|+.+|+++.|+++.||.=.. +..
T Consensus 26 RRmAtCSsDq~vkI~d~~~~s~~----W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~ 101 (361)
T KOG2445|consen 26 RRMATCSSDQTVKIWDSTSDSGT----WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRR 101 (361)
T ss_pred ceeeeccCCCcEEEEeccCCCCc----eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccce
Confidence 3344566777788886 222222 245567889999999999987 589999999999999998531 124
Q ss_pred eEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEECCCCc------EEEEEe-------cCCCceEEEEEec--
Q 008717 307 VSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGE------CLHVYE-------KTGVGLISCGWFL-- 369 (556)
Q Consensus 307 ~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-------~~~~~v~~i~~~~-- 369 (556)
.....++......|+.++|.| -|-.+++++.||.++||+.-.-- ....++ .+..+..|+.|+|
T Consensus 102 Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr 181 (361)
T KOG2445|consen 102 WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR 181 (361)
T ss_pred eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccc
Confidence 456677888889999999999 57789999999999999874322 122222 3456678999997
Q ss_pred -CCCeEEEEeCC-----CcEEEEECCC--Ce---EEEeecccCCCeeEEEEccCC----CEEEEEeCCCeEEEEECCCCe
Q 008717 370 -DGGGIFAGMTD-----KSICLWDLDG--RE---LESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANF 434 (556)
Q Consensus 370 -~~~~l~~~~~d-----g~i~vwd~~~--~~---~~~~~~~~~~~v~~v~~s~~g----~~l~~~~~d~~I~i~d~~~~~ 434 (556)
...+|++|+.+ +.++||.... ++ +..+. .+..+|++++|.|+- ..|++++.|| |+||.++...
T Consensus 182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 35678888766 4788887642 22 22333 455599999999963 4689999999 9999987310
Q ss_pred ----------------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 435 ----------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 435 ----------------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
..+..|++.|..+.|+-.|..|++.+.||+|++|...
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2244688999999999999999999999999999753
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.8e-18 Score=160.79 Aligned_cols=264 Identities=19% Similarity=0.211 Sum_probs=205.2
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 342 (556)
...|.+|.+.|..+.|+..|..|++|+.|..|.+||+.... ....-..+|...|....|-| +...+++++.||.|+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34677899999999999999999999999999999998653 23344568999999989988 457899999999999
Q ss_pred EEECCC-CcE--EEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeE---EEeecccCC---CeeEEEEccC
Q 008717 343 RWDVNS-GEC--LHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGREL---ESWKGQKTL---RISDMAITDD 412 (556)
Q Consensus 343 iwd~~~-~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~---~v~~v~~s~~ 412 (556)
+=.+.. +.+ ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.... ......+.. ..+.++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887743 332 34556789999999999954 5688999999999999975322 112222222 4678899997
Q ss_pred CC-EEEEEeCCCeEEEEECCCCe-e-------eee------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC-C--
Q 008717 413 GK-RIISICREAAILLLDREANF-E-------RWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P-- 474 (556)
Q Consensus 413 g~-~l~~~~~d~~I~i~d~~~~~-~-------~~~------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-~-- 474 (556)
.. .+++++.|..+++||.+... . .+. .....|++++++.++.-|++...|-.|+++.-..+ +
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 65 78999999999999987643 1 111 22456999999988888888888999999954322 0
Q ss_pred --------cceeE-EeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCc
Q 008717 475 --------KLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 475 --------~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 530 (556)
..+.. |+||.+..++-.+-||+|...|+++||.-|.|.||+-.+++++....+..+
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~ 437 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH 437 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc
Confidence 23334 899998877777899999999999999999999999999988776665544
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=175.03 Aligned_cols=246 Identities=14% Similarity=0.211 Sum_probs=190.4
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
.++.+.||.+.|+|+.|...|.++++|+.|..++||...+. .+.....||.+.|+.++.+.+...+++++.|..|++
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45567799999999999999999999999999999998765 567889999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe----ecccCCC----------------
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW----KGQKTLR---------------- 403 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~---------------- 403 (556)
|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...... .......
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999954 778999999999871111000 0000001
Q ss_pred ----------eeEEEEccCCCEEE-----------EEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCC-CEEEEE
Q 008717 404 ----------ISDMAITDDGKRII-----------SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVN 459 (556)
Q Consensus 404 ----------v~~v~~s~~g~~l~-----------~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~-~~l~~~ 459 (556)
..+++|...+-.++ ++-.+..+.+|++.++. +...+|...+..+.++|-+ +...++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 22222222222222 23334557788888886 6667888889999999955 555678
Q ss_pred EcCCeEEEEEcCCCCcceeEEe-CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 460 LINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 460 ~~dg~I~lwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.||...|||+-.+ .+++.+. +|.. .+...| |+||..++....-|.++|.....++.
T Consensus 415 g~dgst~iwdi~eg-~pik~y~~gh~k---l~d~kF-Sqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEG-IPIKHYFIGHGK---LVDGKF-SQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cCCCceEeeecccC-Ccceeeecccce---eecccc-CCCCceEecCCCCCceEEeccCCCcc
Confidence 88999999999888 6666554 4433 355777 99999999999999999998765544
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=161.29 Aligned_cols=231 Identities=13% Similarity=0.197 Sum_probs=179.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (556)
.|..++|-|||..|+.+. +..+.+||++.+ ....++++|.+.|+|++|+.||+.+++|+.|..|.+|+-.-.- +.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee
Confidence 789999999999888774 458999999977 5668899999999999999999999999999999999864322 22
Q ss_pred EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 008717 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~ 433 (556)
.+ .|+..|.|+.|+|-...+++++- ...-+|..+.+.+...... .++.+++|+.||++++.|-.+|+|.+-+-...
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 33 48889999999999999999886 3467888776655443333 37999999999999999999999999865544
Q ss_pred e-eeee---ecCCceEEEEEcCCC-----CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEE
Q 008717 434 F-ERWI---EEEEVITSFSLSKDN-----KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 434 ~-~~~~---~~~~~i~~v~~sp~~-----~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
. .... +.+.+|.+++|+|.. ..+++.....++.++.+.. +.+.+-+.-.-.- ....+ -++|.|+..
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP--~CisY-f~NGEy~Li 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDP--CCISY-FTNGEYILL 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCc--hhhee-ccCCcEEEE
Confidence 4 2222 367889999999953 5788888888999998765 3343222211111 22334 579999999
Q ss_pred eeCCCcEEEEEcCC
Q 008717 505 GSEDSQNVPEILLS 518 (556)
Q Consensus 505 gs~dg~v~iwd~~~ 518 (556)
|+.|+.+.+|...+
T Consensus 240 GGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDG 253 (1081)
T ss_pred ccCCCceEEEeecC
Confidence 99999999997554
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.5e-17 Score=157.33 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=152.5
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 008717 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 276 ~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 355 (556)
.+++|+++|..|++|+.||++|||++.+. ........|.+.|.++.|+|||+.|++.+.| ..+||++++|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998754 3445667899999999999999999999999 9999999999776655
Q ss_pred ec--CCCceEEEEEecCC---CeEEE--EeCCCcEEEEECCC--C----eEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 356 EK--TGVGLISCGWFLDG---GGIFA--GMTDKSICLWDLDG--R----ELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 356 ~~--~~~~v~~i~~~~~~---~~l~~--~~~dg~i~vwd~~~--~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
.. ....+..|.|+.|+ .+.+. ...-+.|..||+.. + +..+....+. .|++++.+++|++++.|+.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~-siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK-SISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC-cceeEEEcCCCcEEEEeccC
Confidence 42 23456677888776 33333 33445677777631 1 1222222222 79999999999999999999
Q ss_pred CeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 423 ~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
|.|.|++..+.+ ..-..|...|+.+.|+||.+++++.+.+..+.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999887 33346888999999999999999999999988887754
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.1e-17 Score=161.45 Aligned_cols=244 Identities=14% Similarity=0.238 Sum_probs=174.9
Q ss_pred eecCCCCceeeecCCCCCCCCC---------CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC----
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRI---------PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG---- 305 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~---------~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~---- 305 (556)
||+.....++...++....|.+ ..+++.++.+|.++|.|+++++++..+++|+.||+|+.|++..+.
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d 381 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD 381 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc
Confidence 4444444444444444443433 346788999999999999999999999999999999999765221
Q ss_pred ---eeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--CCceEEEEEecCC-CeEEEEeC
Q 008717 306 ---QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDG-GGIFAGMT 379 (556)
Q Consensus 306 ---~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~~~~~ 379 (556)
.......+.||.+.|+.+++|+....|++|+.||++++|+...... .+|... .+...++.+-... ...++...
T Consensus 382 s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~ 460 (577)
T KOG0642|consen 382 SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFR 460 (577)
T ss_pred ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcc
Confidence 1134467889999999999999999999999999999999866555 444332 2333445544222 12222222
Q ss_pred CCcEEEEECCCCeEEEeec-------ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEc
Q 008717 380 DKSICLWDLDGRELESWKG-------QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS 450 (556)
Q Consensus 380 dg~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~s 450 (556)
-+.-.+++++...-..+.. .....+.-+.++|.+.+.+++..|+.|+++|..++. .....|...++++++.
T Consensus 461 ~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~ 540 (577)
T KOG0642|consen 461 FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID 540 (577)
T ss_pred cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec
Confidence 2222233333211111111 111257788899999999999999999999999998 7778899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
|+|-+|++++.|+.+++|.+... .++.....|.
T Consensus 541 ~ng~~l~s~s~d~sv~l~kld~k-~~~~es~~~r 573 (577)
T KOG0642|consen 541 PNGPYLMSGSHDGSVRLWKLDVK-TCVLESTAHR 573 (577)
T ss_pred CCCceEEeecCCceeehhhccch-heeecccccc
Confidence 99999999999999999999776 6666665554
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.5e-16 Score=162.39 Aligned_cols=222 Identities=15% Similarity=0.179 Sum_probs=156.2
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-C
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-Q 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~ 337 (556)
....+.+..|...+.+.+|||||+.|++++.+ ..|++||+.++. ...+..+.+| ...++|+|||+.|+.++ .
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECCCCCEEEEEEec
Confidence 33456677888899999999999999987654 369999998653 2333444444 34689999999988765 5
Q ss_pred CCcEEE--EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECC--CCeEEEeecccCCCeeEEEEccC
Q 008717 338 EEAIRR--WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 338 dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
+|.+.| ||+.+++. ..+..+...+....|+|||+.++.++ .+|...+|+++ +...... . +. . .+..|+||
T Consensus 269 ~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~-~-~~~~~SpD 343 (429)
T PRK01742 269 DGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GR-G-YSAQISAD 343 (429)
T ss_pred CCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CC-C-CCccCCCC
Confidence 776555 56666654 44555666788899999999877655 56777777764 4433332 2 22 2 46789999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC--CCCcceeEEeCccCceeEE
Q 008717 413 GKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE--SDPKLVSRYKGHKRARFVI 490 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~--~~~~~~~~~~~~~~~~~~i 490 (556)
|++++.++.++ +.+||+.++............++.|+|||++|++++.++.+.+|++. ++ ..+..+.+|.+.+..
T Consensus 344 G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~- 420 (429)
T PRK01742 344 GKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDGQVKF- 420 (429)
T ss_pred CCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCCCCCC-
Confidence 99998887755 56699988873222222234678899999999999999988888763 45 678888877765333
Q ss_pred EEeecCC
Q 008717 491 RSCFGGF 497 (556)
Q Consensus 491 ~~~~~s~ 497 (556)
.+| +|
T Consensus 421 -p~w-sp 425 (429)
T PRK01742 421 -PAW-SP 425 (429)
T ss_pred -ccc-CC
Confidence 444 55
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=8.5e-17 Score=158.54 Aligned_cols=239 Identities=17% Similarity=0.258 Sum_probs=178.1
Q ss_pred EccCCCEEEE--EeCCCcEEEEEeecCCeeE--EEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCC-----
Q 008717 280 FSHDGKYLAS--SSKDQSAIIWEVKEDGQVS--LKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG----- 349 (556)
Q Consensus 280 ~sp~g~~las--~s~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~----- 349 (556)
|+.+..++|. ++..|.|-||++...+.+. .+-.+. ....|+.+.|.| |...|+.++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3445556664 4567899999998655421 111111 345699999999 7889999999999999998654
Q ss_pred --cEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 350 --ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 350 --~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
.....+..|...|+++.|+| -.+.+++++.|-+|++||+.+...+.....|.+.|.+++|+|+|+.+++.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34567788999999999999 567899999999999999998877777777777999999999999999999999999
Q ss_pred EEECCCCeeeeeecCC----ceEEEEEcCCCCEEEEEEcCC----eEEEEEcCCCC-cceeEEeCccCceeEEEEeecCC
Q 008717 427 LLDREANFERWIEEEE----VITSFSLSKDNKYLLVNLINQ----EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGF 497 (556)
Q Consensus 427 i~d~~~~~~~~~~~~~----~i~~v~~sp~~~~l~~~~~dg----~I~lwd~~~~~-~~~~~~~~~~~~~~~i~~~~~s~ 497 (556)
+|..++.........+ .-..+.|--||+++++.+.|. .|.+||..+-. ..+.+..-...+... +-++.+
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L--vP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL--VPHYDY 823 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc--cccccC
Confidence 9999988744433332 334678888999999887664 58899986541 233333222222111 333356
Q ss_pred CCc-EEEEeeCCCcEEEEEcCCCce
Q 008717 498 EQA-FIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 498 ~~~-~l~sgs~dg~v~iwd~~~~~~ 521 (556)
|.. ++++|-.|..|++|.+..+.+
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred CCceEEEecCCCceEEEEEecCCCc
Confidence 655 567888899999999887665
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=9.7e-16 Score=158.01 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=155.5
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEec
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 369 (556)
+..|.+||..... ...+..|...+..+.|||||+.|+.++.+ ..|++||+.+++.... ....+....++|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999987432 24566788889999999999999988754 3699999988864322 22222344689999
Q ss_pred CCCeEEEEe-CCCcEE--EEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC--CeeeeeecCCc
Q 008717 370 DGGGIFAGM-TDKSIC--LWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA--NFERWIEEEEV 443 (556)
Q Consensus 370 ~~~~l~~~~-~dg~i~--vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~--~~~~~~~~~~~ 443 (556)
||+.|+.++ .+|.+. +||+.++....+..+. ..+....|+|||+.++.++ .++...||++.. +......+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999988765 677654 5577777766665543 3688999999999877655 567788887654 3333333333
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC--CCce
Q 008717 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL--SESV 521 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~--~~~~ 521 (556)
.+..|+|||++|++.+.++ +.+||+.++ +.......+.. ....| +|||++|+.++.+|.+.+|.+. ++..
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g-~~~~lt~~~~~----~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSG-STEVLSSTFLD----ESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCC-CeEEecCCCCC----CCceE-CCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 4578999999999888765 666999887 43322222211 12445 9999999999999988888763 4555
Q ss_pred eeeecCCCcc
Q 008717 522 AAAASSLDNF 531 (556)
Q Consensus 522 ~~~~~~~~~~ 531 (556)
......+.+.
T Consensus 408 ~~~l~~~~g~ 417 (429)
T PRK01742 408 KARLPGSDGQ 417 (429)
T ss_pred eEEccCCCCC
Confidence 5555555543
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-14 Score=126.87 Aligned_cols=266 Identities=14% Similarity=0.170 Sum_probs=183.8
Q ss_pred ceeecCCCCceeeecCCCCCC--CCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe---eEEE
Q 008717 237 CLFHNTSDSDFSLYSDHQCGR--NRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ---VSLK 310 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~--~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~---~~~~ 310 (556)
.+|.+...+.+.++....... ...+ ...+...++|.++|+.++|. ..+|++|+ ||.|+=|..+...+ .+..
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhh
Confidence 366777777777665443322 1223 34455568999999999998 34567664 69999998864221 0110
Q ss_pred E--EecCCC-----CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcE
Q 008717 311 H--RLSGHR-----KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (556)
Q Consensus 311 ~--~~~~h~-----~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 383 (556)
. ....|. -.|+++...|..+.+++++.|+.++-||+++|+..+++++|...+.+++--.....+++|+.||++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 0 111222 358899999988888888899999999999999999999999999999886667789999999999
Q ss_pred EEEECCCCeEEEeec----------ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCC
Q 008717 384 CLWDLDGRELESWKG----------QKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKD 452 (556)
Q Consensus 384 ~vwd~~~~~~~~~~~----------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~ 452 (556)
++||+++.+...... +....|.+++.+ ..++++|+ ...+.+|.+++.+ ...+.-..++..+.|.
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~-- 255 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV-- 255 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeee--
Confidence 999998755433332 122245666654 45777764 4679999999988 7777888889999996
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 453 NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 453 ~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
.+.+++++..+.+.-|.+.. .+...........+...+.. +| -++|-.++..+.+.|+
T Consensus 256 ~d~vl~~G~g~~v~~~~l~G--vl~a~ip~~s~~c~s~s~~~-~p-~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 256 DDCVLIGGEGNHVQSYTLNG--VLQANIPVESTACYSASWQT-SP-IKFISIAGFSNKLHIL 313 (325)
T ss_pred cceEEEeccccceeeeeecc--EEEEeccCCccceeeecccC-Cc-eEEEEecccceeeeee
Confidence 44688888788899998754 33333333333322222222 33 3556666667777665
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3.4e-15 Score=157.75 Aligned_cols=263 Identities=13% Similarity=0.094 Sum_probs=189.4
Q ss_pred CCCCcceeEEecccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecC----CeeEEEEEecCCCCCeEEEEeCCCCCEE
Q 008717 258 NRIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (556)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l 332 (556)
|+..+..+..+..|...|..++.++.. .+++|||.||+|++|+...- +..+...++....+.+.++...++++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 566677888899999999999998855 99999999999999998631 2334445555567889999999999999
Q ss_pred EEEeCCCcEEEEECCCC--c-----EEEEEecC-CCceEEE-EEec-CCC-eEEEEeCCCcEEEEECCCCeEEE--eecc
Q 008717 333 LTCGQEEAIRRWDVNSG--E-----CLHVYEKT-GVGLISC-GWFL-DGG-GIFAGMTDKSICLWDLDGRELES--WKGQ 399 (556)
Q Consensus 333 ~s~~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~i-~~~~-~~~-~l~~~~~dg~i~vwd~~~~~~~~--~~~~ 399 (556)
|.++.||.|.+.+++.. + +.+....+ .+.+.++ +|.. ... .++.+...+.|..||++...... ....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998752 1 12222222 2333333 3333 233 67788888999999997633211 1122
Q ss_pred cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC---CEEEEEE--cCCeEEEEEcC
Q 008717 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN---KYLLVNL--INQEIHLWSIE 471 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~---~~l~~~~--~dg~I~lwd~~ 471 (556)
..+.|++++.+|.+.++++|+..|.+.+||++-+. ....++..+|+.+..+|-. ...++++ ..+.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 23489999999999999999999999999999877 3334556788888888743 4555544 46789999999
Q ss_pred CCCcceeEEeCc-----------------cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 472 SDPKLVSRYKGH-----------------KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 472 ~~~~~~~~~~~~-----------------~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
++ .+...+... ......+.+++ ...+.++.+|+.|..|+.||.......
T Consensus 1274 ~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1274 TG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccc
Confidence 88 555554332 12233444555 344568899999999999998876543
No 189
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=8e-15 Score=150.86 Aligned_cols=216 Identities=13% Similarity=0.162 Sum_probs=151.7
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEe---CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCC
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEE 339 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg 339 (556)
..+.+..+...+.+.+|||||+.|+..+ .+..+.+|++.++. ...+..+. +.+..+.|+|||+.|+.. +.+|
T Consensus 190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~---~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFP---RHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCC---CCcCCeEECCCCCEEEEEEcCCC
Confidence 3445555777899999999999998754 24578999987643 23333333 334568999999988865 4444
Q ss_pred --cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-C--cEEEEECCCCeEEEeecccCCCeeEEEEccCCC
Q 008717 340 --AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 340 --~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
.|++||+.+++.... ..+...+....|+|||+.|+.++.+ + .|+++|+.++....+.... .......|+|||+
T Consensus 266 ~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~ 343 (429)
T PRK03629 266 SLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGK 343 (429)
T ss_pred CcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCC
Confidence 599999988876544 3344567889999999998877754 3 4666677776665554332 2567889999999
Q ss_pred EEEEEeCC---CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCe---EEEEEcCCCCcceeEEeCccCce
Q 008717 415 RIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQE---IHLWSIESDPKLVSRYKGHKRAR 487 (556)
Q Consensus 415 ~l~~~~~d---~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~---I~lwd~~~~~~~~~~~~~~~~~~ 487 (556)
+++..+.+ ..|.+||+.++...............|+|||++|+.++.++. +.++++.. .....+.+|.+.+
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~ 420 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQV 420 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCc
Confidence 98876643 358899998887333323333457889999999999987764 67777744 4566777776653
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.7e-14 Score=141.64 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=155.9
Q ss_pred EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEEecCCCceEE
Q 008717 289 SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVN-SGEC--LHVYEKTGVGLIS 364 (556)
Q Consensus 289 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~ 364 (556)
+...++.|.+|++.+++.+..+..+. +.+....++++|++++|++++ .++.|.+|+++ +++. +.... .......
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 34678999999997555555666665 345677899999999987765 47889999996 3432 22222 2335678
Q ss_pred EEEecCCCeEEEEeC-CCcEEEEECCC-Ce---EEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe-ee-
Q 008717 365 CGWFLDGGGIFAGMT-DKSICLWDLDG-RE---LESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-ER- 436 (556)
Q Consensus 365 i~~~~~~~~l~~~~~-dg~i~vwd~~~-~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~-~~- 436 (556)
++|+|+++++++++. ++.|.+|+++. +. ........ ..+..++++|+|+++++++ .++.|.+||+.+.. ..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999999888774 78999999963 21 11111121 2577889999999886555 56999999997632 11
Q ss_pred ------eeecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCC--C-CcceeEEeCcc----CceeEEEEeecCCCCcEE
Q 008717 437 ------WIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIES--D-PKLVSRYKGHK----RARFVIRSCFGGFEQAFI 502 (556)
Q Consensus 437 ------~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~--~-~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l 502 (556)
..........+.|+|+|++++++.. ++.|.+|++.. + .+.+..+..+. ...+...+.+ +|+++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI-TPDGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE-CCCCCEE
Confidence 1122345678999999999988876 89999999973 2 12233333221 1222333556 8999999
Q ss_pred EEeeC-CCcEEEEEcCC
Q 008717 503 ASGSE-DSQNVPEILLS 518 (556)
Q Consensus 503 ~sgs~-dg~v~iwd~~~ 518 (556)
+++.. ++.|.+|++..
T Consensus 243 yv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 243 YACDRTASLISVFSVSE 259 (330)
T ss_pred EEecCCCCeEEEEEEeC
Confidence 98865 78999999864
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.7e-15 Score=155.13 Aligned_cols=244 Identities=19% Similarity=0.227 Sum_probs=174.5
Q ss_pred CcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecC--CeeEEEEEecC-------CCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 273 DEVWFLQFSH--DGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSG-------HRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 273 ~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~-------h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
..|+.+.+-. |..++.+|+.||.|+||+-... ++.+.+..+.+ ..+.-.-+.|.....+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 5688888877 5568999999999999986533 33344433322 12222346788877778877778899
Q ss_pred EEEECCCCcEEEEEecC-CCceEEEEEec-CCCeEEEEeCCCcEEEEECCCC----eEEEeecccC-CCeeEEEEccCCC
Q 008717 342 RRWDVNSGECLHVYEKT-GVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR----ELESWKGQKT-LRISDMAITDDGK 414 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~-~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~-~~v~~v~~s~~g~ 414 (556)
+|||.....++..+... ...++++.-+. .|+.+++|..||.|++||.+.- .+..+..+.. .+|..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 99999888777766533 45566665433 5799999999999999999742 2334444333 1389999998775
Q ss_pred E-EEEEeCCCeEEEEECCCCe----eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC-
Q 008717 415 R-IISICREAAILLLDREANF----ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR- 485 (556)
Q Consensus 415 ~-l~~~~~d~~I~i~d~~~~~----~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~- 485 (556)
. +++|+.+|.|++||++... .....| .+..+++..+++...+|+|+. +.|+||++... .+..++.+..
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGF 1346 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCccc
Confidence 4 9999999999999999843 222222 235999999999999999997 99999998753 4444433221
Q ss_pred ---ceeE-EEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 486 ---ARFV-IRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 486 ---~~~~-i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+.. ....| +|..-++|+|+.|..|.||....+.
T Consensus 1347 ~~q~~gs~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAF-HPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCcCCCcceeee-cchhHhhhhccCCceEEEeecCCcC
Confidence 1112 33455 9999999999999999999876554
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=1.9e-15 Score=136.32 Aligned_cols=233 Identities=14% Similarity=0.232 Sum_probs=170.3
Q ss_pred ccCCcEEEEEEccCCC-----EEEEEeCCCcEEEEEeecC-CeeEEEEEe-----cCCCCCeEEEEeCC-CCCEEEEEeC
Q 008717 270 AHSDEVWFLQFSHDGK-----YLASSSKDQSAIIWEVKED-GQVSLKHRL-----SGHRKPVFTVSWSP-NDHQLLTCGQ 337 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~-----~las~s~dg~i~iwd~~~~-~~~~~~~~~-----~~h~~~v~~l~~s~-~~~~l~s~~~ 337 (556)
.|.-+++.+-|.|+.. +|||.+ ..+++|.+... .+..+...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999763 566654 48999999742 222222222 34567899999987 6789999999
Q ss_pred CCcEEEEECCCCc---EEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEe---ecccCCCeeEEEEc
Q 008717 338 EEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESW---KGQKTLRISDMAIT 410 (556)
Q Consensus 338 dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~s 410 (556)
|-+..|||+.++. ....+-.|...|..++|..++ +.|++.+.||.|++||++..+-.++ ......+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 355677899999999999754 5688899999999999986433222 22223478889998
Q ss_pred cCC-CEEEEEeCC-CeEEEEECCCCe---eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCc-----ceeE
Q 008717 411 DDG-KRIISICRE-AAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPK-----LVSR 479 (556)
Q Consensus 411 ~~g-~~l~~~~~d-~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~-----~~~~ 479 (556)
+.. +++++-..| ..|.|.|++... .++.+|.+.|+.++|.|. ...|++++.|..+.+||+..... ++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 854 567765544 569999999876 778899999999999995 47899999999999999975422 2333
Q ss_pred EeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
+. ..+.+.. +.|.+..+.+|+.+..
T Consensus 332 y~-a~~EVNq--i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 332 YT-AGGEVNQ--IQWSSSQPDWIAICFG 356 (364)
T ss_pred hh-ccceeee--eeecccCCCEEEEEec
Confidence 33 2233333 4553456677876654
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.4e-14 Score=132.49 Aligned_cols=237 Identities=11% Similarity=0.116 Sum_probs=177.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--CcEEEEECCCC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSG 349 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~ 349 (556)
...+..+.|+.+...|..|+.|| .++|+...-++ ..........|.-+-|+ ..++|..+.+ ..+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999987 46777653322 11111122345555665 4466666554 35999999888
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee-cc--cCCCeeEEEEccCCCEEEEEe--CCCe
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQ--KTLRISDMAITDDGKRIISIC--REAA 424 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~--~~~~v~~v~~s~~g~~l~~~~--~d~~ 424 (556)
..+..+. ...+|.++.++ -++++++-.+. |+|||++..++.... .. +...+.++++++.+.+++.-+ ..|.
T Consensus 79 ~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 7777765 34568888886 45777776654 999999876554322 22 222466666666667887533 4688
Q ss_pred EEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCe-EEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcE
Q 008717 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 425 I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~-I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
|.+||..+-+ ..+..|.+++.+++|+++|.+||+++..|+ |+++.+.++ +.+..|+.....+...+.+| +|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~F-s~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSF-SPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEE-CCCCCe
Confidence 9999999987 667789999999999999999999999997 799999999 88999987777777777888 999999
Q ss_pred EEEeeCCCcEEEEEcCCCc
Q 008717 502 IASGSEDSQNVPEILLSES 520 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~ 520 (556)
|++.|+.++|+||.+....
T Consensus 233 L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEecCCCeEEEEEecccc
Confidence 9999999999999987654
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.3e-14 Score=151.16 Aligned_cols=268 Identities=16% Similarity=0.195 Sum_probs=183.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC---CCCCeEEEEeCC--CCCEEEEEeCCCcEEEEECC
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG---HRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~ 347 (556)
..-..+.|+|=...++++...-.|+|||.+.+. ....|.. ....|+.+.+-. |...+++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~---~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGR---LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCc---eeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 355667788877788988877799999998763 3333433 345688888754 55689999999999999742
Q ss_pred -C----CcEEEEEec-------CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEeecccCCCeeEEEEcc-CC
Q 008717 348 -S----GECLHVYEK-------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITD-DG 413 (556)
Q Consensus 348 -~----~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~s~-~g 413 (556)
+ .+.+..+.. ..+.-.-+.|.....++++++.-..|+|||..... +..+.......|+++.-+- .|
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2 122322221 11112446788777778887778899999997644 3444444444677776553 46
Q ss_pred CEEEEEeCCCeEEEEECCCCe-----eeeeecCCc--eEEEEEcCCCC-EEEEEEcCCeEEEEEcCCC-CcceeEEeCcc
Q 008717 414 KRIISICREAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNK-YLLVNLINQEIHLWSIESD-PKLVSRYKGHK 484 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~--i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~-~~~~~~~~~~~ 484 (556)
+.+++|..||.|++||.+... .....|... |..+.+.+.|- .|++|+.||.|++||++.. .....+...|.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 899999999999999998754 455667766 99999999774 4999999999999999984 12223333343
Q ss_pred CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec--CCCc-ccccceeeEeEeeh
Q 008717 485 RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS--SLDN-FVSSYFCLHLFSFY 544 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~~ 544 (556)
.....+.+.+.+++...||+|+. +.|.||++..+.+..... ++.+ .+.+..|+.++.+.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 21111334444889999999998 999999998877644332 1112 23555676655543
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=147.80 Aligned_cols=206 Identities=17% Similarity=0.231 Sum_probs=157.7
Q ss_pred EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEE
Q 008717 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 365 (556)
.++.++.||.+.|.+-. + +.-..+..|.++|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|+
T Consensus 77 ~~~i~s~DGkf~il~k~--~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS--A--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEeccc--c--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 46666677777766543 1 33456678999999999999999999999999999999 4665555566667889999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCc
Q 008717 366 GWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEV 443 (556)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~ 443 (556)
+|.|+++.++.+.. +.+.+=.+. ..++..|..|. +-|.++.|++..+.+++|+.|-..++||..... .....|..+
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA 229 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccc
Confidence 99999888777655 456666665 34566676655 489999999999999999999999999988776 667789999
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
|++++|.|+ +.+++++ -+++++= ....+.++. ..| |+||..+++|...|.+.+=.
T Consensus 230 ITSva~npd-~~~~v~S-~nt~R~~------------~p~~GSifn--lsW-S~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWS-YNTARFS------------SPRVGSIFN--LSW-SADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeeccc-cceeeee-eeeeeec------------CCCccceEE--EEE-cCCCceeeccccCceEEEee
Confidence 999999999 6666666 3334411 122334333 555 99999999999999876643
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.9e-16 Score=150.47 Aligned_cols=211 Identities=20% Similarity=0.300 Sum_probs=160.2
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE-EecCCCCCeEEEEeCC--CCCEEEEEeCCCcE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH-RLSGHRKPVFTVSWSP--NDHQLLTCGQEEAI 341 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 341 (556)
-+.|.||.+.|+|++|+.+|.+|++||.|-.+.|||.-.. ++++ .-.+|...|.+++|-| +++.+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4568899999999999999999999999999999999743 3333 3368999999999998 56789999999999
Q ss_pred EEEECCC----------CcEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEE--------eec--cc
Q 008717 342 RRWDVNS----------GECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELES--------WKG--QK 400 (556)
Q Consensus 342 ~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~--------~~~--~~ 400 (556)
+++|+.. .+....+..|...|..++..|++ +.+.+++.||+|+-+|++...... ... ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974 23455667888889999999988 789999999999999997521100 000 01
Q ss_pred CCCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCe-------------------eeee--ecC-----------CceEEE
Q 008717 401 TLRISDMAITDDG-KRIISICREAAILLLDREANF-------------------ERWI--EEE-----------EVITSF 447 (556)
Q Consensus 401 ~~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~-------------------~~~~--~~~-----------~~i~~v 447 (556)
--...|++++|.. .+|++|+.|-..++||.+... .... +|- ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 1146789999965 578999999999999943211 0000 110 115668
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 448 ~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
+|+|+|.-|++.-..-.|+++|+..+..+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 9999998888887777899999988733333
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=7.7e-16 Score=149.27 Aligned_cols=190 Identities=17% Similarity=0.252 Sum_probs=153.5
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+.-+.+.+|.+.|.|-.|+|||.-|++++.||.|++|.-. + -+..++.....+|.|++|.|+.+.++.|.. +.+
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--G--MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~ 168 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--G--MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHI 168 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--c--hHHHHHhhcCceeEEEEECCCCCceEEecC-CeE
Confidence 45556788999999999999999999999999999999865 2 122344556788999999999988887654 477
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
.|=.+.....+-..+.|.+-|.++.|++.++.+++|+.|-..++||-.+..+.....+. .+|++++|+|+ +.++.++.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~e-y~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEE-YAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhc-cceeeeeeccc-cceeeeee
Confidence 77777666667788899999999999999999999999999999999887776655444 49999999999 66666654
Q ss_pred CCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 422 d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
+++++ .....+.|..++||+||..+++|+..|.+.+=
T Consensus 247 -nt~R~---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 247 -NTARF---------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -eeeee---------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 34442 12345679999999999999999988876543
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.2e-14 Score=144.26 Aligned_cols=224 Identities=12% Similarity=0.089 Sum_probs=153.9
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
..|.+||....+. +.+..+...+.+.+|||||+.|+..+. +..|.+|++.+|+..... .....+....|+||
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 3688888774322 334456778999999999999987653 347999999888644322 22333456899999
Q ss_pred CCeEEEE-eCCC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCe-eeeeecCCc
Q 008717 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (556)
Q Consensus 371 ~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~I~i~d~~~~~-~~~~~~~~~ 443 (556)
|+.|+.. +.+| .|++||++++....+..... .+....|+|||+.|+..+.+ + .|+++|+.++. ..+......
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988865 4444 59999999887776665543 67889999999988877654 3 46666777765 344444455
Q ss_pred eEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCc---EEEEEcC
Q 008717 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ---NVPEILL 517 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~---v~iwd~~ 517 (556)
.....|+|||++|+..+.+ ..|.+||+.++ . ...+..... . ....| +|||++|+.++.++. ++++++.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~~~-~--~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDTFL-D--ETPSI-APNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCCCC-C--CCceE-CCCCCEEEEEEcCCCceEEEEEECC
Confidence 6678999999999887654 35889999876 3 334432211 1 22455 999999999988764 6777875
Q ss_pred CCceeeeecCCCc
Q 008717 518 SESVAAAASSLDN 530 (556)
Q Consensus 518 ~~~~~~~~~~~~~ 530 (556)
.+.. ..+..+++
T Consensus 407 G~~~-~~l~~~~~ 418 (429)
T PRK03629 407 GRFK-ARLPATDG 418 (429)
T ss_pred CCCe-EECccCCC
Confidence 5444 33334444
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=146.62 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=184.7
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
.|.-.++|.++||+++++|+|..||.|.+|.--. .+.-...+.+.=|...|.+++|+++|.+|++||..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4667799999999999999999999999997543 222234456777999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE----ee-------cccCCCeeEEEEccCCCEEE
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----WK-------GQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~-------~~~~~~v~~v~~s~~g~~l~ 417 (556)
++ .+-+..-.++|..+.++||+........|..|.+....+..+.. +. ....+-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 98 45566668899999999999999999999999998774322211 11 11223567889999777888
Q ss_pred EEeCCCeEEEEECCCCe--ee--ee---------ecCCceEEEEEcCCCCEEEEEE--------cCC--eEEEEEcCCCC
Q 008717 418 SICREAAILLLDREANF--ER--WI---------EEEEVITSFSLSKDNKYLLVNL--------INQ--EIHLWSIESDP 474 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~--~~---------~~~~~i~~v~~sp~~~~l~~~~--------~dg--~I~lwd~~~~~ 474 (556)
..+..|.|.+||+.+.. .. .. .+.-.++.++.+..|.++++.- .|| .+++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 88999999999998876 11 11 1123477888888899999874 233 47889764431
Q ss_pred ---cceeE-EeCccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCCCc
Q 008717 475 ---KLVSR-YKGHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 475 ---~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+... ...|...... .++.++... ..++++.||.++||-+.+.+
T Consensus 442 kt~~L~T~I~~PH~~~~va--t~~~~~~rs~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVA--TIFLNPTRSVRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred ceeEEEEEEecCCCceeEE--EEEecCcccceeEEeccCCeEEEEEEeccc
Confidence 22222 2456554333 455455544 88999999999999986543
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.1e-14 Score=148.33 Aligned_cols=216 Identities=17% Similarity=0.138 Sum_probs=151.4
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~ 337 (556)
....+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. ..+..+.+...++.|+|||+.|+. .+.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCceECCCCCEEEEEEeC
Confidence 34455566778889999999999999987643 4699999976532 223334455567899999998764 455
Q ss_pred CC--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CC--cEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 338 EE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 338 dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
+| .|++||+.+++.. .+..+.......+|+|||+.++.++. +| .|+++|+.++....+.... ......+|+||
T Consensus 269 ~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpD 346 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPD 346 (433)
T ss_pred CCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCC
Confidence 55 5999999888754 44445445567899999999887764 44 4777788776655544322 24557899999
Q ss_pred CCEEEEEeCCC---eEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCccC
Q 008717 413 GKRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 413 g~~l~~~~~d~---~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
|++++..+.++ .|.+||+.++......+........|+|||++++..+.+ +.|.++++.. .....+..+.+
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g 423 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADG 423 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEEcccCCC
Confidence 99988765443 699999988874444444455678999999998877753 3588888754 34555554433
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=3.7e-15 Score=136.30 Aligned_cols=192 Identities=16% Similarity=0.218 Sum_probs=154.0
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
-+..++++.|...|++++|+|.++.|++++.|...+||....++..++...+..++...+++.|+|.++.+++|+....|
T Consensus 45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i 124 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI 124 (361)
T ss_pred ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence 46788999999999999999999999999999999999997788888888888999999999999999999999999999
Q ss_pred EEEECCCCcEE----EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEEC-----CCC-------------eEEEeecc
Q 008717 342 RRWDVNSGECL----HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL-----DGR-------------ELESWKGQ 399 (556)
Q Consensus 342 ~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~-----~~~-------------~~~~~~~~ 399 (556)
.||-++...-- +.-+.+.+.|++++|+|++-.+++|+.|+..+++.. +.+ ++......
T Consensus 125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 99988654321 122345778999999999999999999999999864 211 11111223
Q ss_pred cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC
Q 008717 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN 453 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~ 453 (556)
..+.+..+.|+|+|..|+-.+.|..+.+-|..... .......-+..++.|-.+.
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 44589999999999999999999999999988764 2222223556666665443
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.2e-14 Score=130.78 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=174.8
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEec-ccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCeeEE-----
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSL----- 309 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~-~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~----- 309 (556)
++.....+..+.++++.. ++...++ .....|.|++|-|.+ +-|+.|+. +-|.||..........
T Consensus 112 ~fava~nddvVriy~kss--------t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS--------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred hhhhhccCcEEEEeccCC--------CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccc
Confidence 333445566667776553 2222232 234679999999954 45666665 5689998763221111
Q ss_pred ------EEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCc
Q 008717 310 ------KHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (556)
Q Consensus 310 ------~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 382 (556)
+....+| .+|+++.|.+||..+++++. |..|.|||.+++..+.......+.+.-+.|+||+.+|++++-|+.
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 1223345 68999999999999999987 568999999999887766556677889999999999999999999
Q ss_pred EEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-------------eeee---------e
Q 008717 383 ICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-------------ERWI---------E 439 (556)
Q Consensus 383 i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-------------~~~~---------~ 439 (556)
.++|+.. +.....+..... .|...+|+|+|++|+.++. +.-++|.+.... ...+ .
T Consensus 262 frlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a 339 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA 339 (445)
T ss_pred eeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence 9999654 344444444443 8999999999998765543 233344432110 1111 1
Q ss_pred ----cCCceEEEEEcCCCCEEEEEEcCCe--------EEEEEcCCCCccee-EEeCc---cCceeEEEEeecCCCCcEEE
Q 008717 440 ----EEEVITSFSLSKDNKYLLVNLINQE--------IHLWSIESDPKLVS-RYKGH---KRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 440 ----~~~~i~~v~~sp~~~~l~~~~~dg~--------I~lwd~~~~~~~~~-~~~~~---~~~~~~i~~~~~s~~~~~l~ 503 (556)
..+++.+++|+|.|.+|++.-..+. |.+||.+.. ..+. .+-+. ..+ ..|...+.-.++.+|.
T Consensus 340 g~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s-p~vels~cg~i~ge~P-~~IsF~pl~n~g~lLs 417 (445)
T KOG2139|consen 340 GQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS-PPVELSYCGMIGGEYP-AYISFGPLKNEGRLLS 417 (445)
T ss_pred CcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc-CceEEEecccccCCCC-ceEEeeecccCCcEEE
Confidence 1467889999999999999876543 778887764 2222 22122 122 1233333234677777
Q ss_pred EeeCCCcEEEEEcC
Q 008717 504 SGSEDSQNVPEILL 517 (556)
Q Consensus 504 sgs~dg~v~iwd~~ 517 (556)
.+=..|.+.-|++.
T Consensus 418 iaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 418 IAWSTGRIQRYPLT 431 (445)
T ss_pred EEeccCceEeeeeE
Confidence 77777777776654
No 203
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.4e-14 Score=147.04 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=152.0
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE-EEe
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCG 336 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~ 336 (556)
.....+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+....|+|||+.|+ +.+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEe
Confidence 34555667788889999999999999998763 46899999986532 23445666788899999999876 445
Q ss_pred CCCc--EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CC--cEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 337 QEEA--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 337 ~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
.++. |.+||+.+++.. .+..+........|+|||+.++..+. +| .|++||+.++....+.... ..+....|+|
T Consensus 266 ~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~Sp 343 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSP 343 (435)
T ss_pred cCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECC
Confidence 5554 788898887654 45555555677899999999887764 33 6888999887776665433 3567789999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC------CeEEEEEcCCC
Q 008717 412 DGKRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------QEIHLWSIESD 473 (556)
Q Consensus 412 ~g~~l~~~~~d---~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d------g~I~lwd~~~~ 473 (556)
||+.++..+.+ ..|.+||+.++..........+..+.|+|||++|+..+.+ ..++++|+..+
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 99999877643 3688999876653333334457789999999998876543 25778887654
No 204
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=3.2e-15 Score=134.73 Aligned_cols=222 Identities=16% Similarity=0.234 Sum_probs=165.6
Q ss_pred CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCC-------CcEEEEECCCC---------cEEEE
Q 008717 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQE-------EAIRRWDVNSG---------ECLHV 354 (556)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d-------g~i~iwd~~~~---------~~~~~ 354 (556)
.|+.|.+.++...+..-..+.|..|.+.|..++-+|-. +.|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 46788888887655544556778889999999999954 555555432 24789988532 23333
Q ss_pred Ee-cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEeec----ccCCCeeEEEEcc--CCCEEEEEeCCCeE
Q 008717 355 YE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL--ESWKG----QKTLRISDMAITD--DGKRIISICREAAI 425 (556)
Q Consensus 355 ~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~----~~~~~v~~v~~s~--~g~~l~~~~~d~~I 425 (556)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... ..+.. .+....++-+|+| +|+.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 43 3456899999999999988876 78899999974322 11111 1223577888998 6776666 578999
Q ss_pred EEEECCCCe---eeeeecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcE
Q 008717 426 LLLDREANF---ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 426 ~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
..||+++.. .....|...+..+.|+|+-+ +|++|+.||.|+|||.+....++..+.+|...++.+++- ....++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--CccceE
Confidence 999999877 33346888899999999875 577888999999999998778999999999988885543 335678
Q ss_pred EEEeeCCCcEEEEEcC
Q 008717 502 IASGSEDSQNVPEILL 517 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~ 517 (556)
|++|+.|..|.+|...
T Consensus 274 iLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEecCCCceeEEEecc
Confidence 9999999999999654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-15 Score=143.94 Aligned_cols=194 Identities=18% Similarity=0.185 Sum_probs=150.9
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec--
Q 008717 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-- 398 (556)
Q Consensus 321 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 398 (556)
.+++|+++|..+++++.||+++||+..+...+.....|...|.++.|+|||+.|++-+.| ..+||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 688999999999999999999999987777777888899999999999999999999999 89999998764333322
Q ss_pred ccCCCeeEEEEccCC---CE--EEEEeCCCeEEEEECCCCe-------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEE
Q 008717 399 QKTLRISDMAITDDG---KR--IISICREAAILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g---~~--l~~~~~d~~I~i~d~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~ 466 (556)
........+.|+.|+ .+ ++.....+.|+.||+.... .+.......|+++++|+||++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 222256777888776 32 3333345667777765433 23333456799999999999999999999999
Q ss_pred EEEcCCCCcceeEE-eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 467 LWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 467 lwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
|++..+. +.++.. +.|...+ ..+.| +||.+++++.+.|....+..+.-.
T Consensus 307 i~~~~~l-q~~~~vk~aH~~~V--T~ltF-~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 307 IYDAKSL-QRLQYVKEAHLGFV--TGLTF-SPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEecee-eeeEeehhhheeee--eeEEE-cCCcCcccccccCCceeEEEEeec
Confidence 9999887 444443 5566654 44777 999999999999999998877653
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.1e-14 Score=145.76 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=145.8
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~ 337 (556)
....+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. . .+....+.+.+..|+|||+.|+. .+.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~---~l~~~~g~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-R---VVANFKGSNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-E---EeecCCCCccceEECCCCCEEEEEEcc
Confidence 33445556778889999999999999987643 3599999986532 2 23333455678999999998874 566
Q ss_pred CCcEEEEE--CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCeEEEeecccCCCeeEEEEccC
Q 008717 338 EEAIRRWD--VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLW--DLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 338 dg~i~iwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vw--d~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
+|...||. +.++. ...+..+........|+|||+.++..+. +|...+| ++.++......... ......+|+||
T Consensus 261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpD 338 (427)
T PRK02889 261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPD 338 (427)
T ss_pred CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCC
Confidence 77766554 54444 4455555555667889999999887654 4555555 55555544443222 23456899999
Q ss_pred CCEEEEEeCCC---eEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccCc
Q 008717 413 GKRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRA 486 (556)
Q Consensus 413 g~~l~~~~~d~---~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~~ 486 (556)
|++++..+.++ .|.+||+.++...............|+|||++|+..+.++ .+++.++. + .....+..+.+.
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~ 416 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGD 416 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCC
Confidence 99998877654 6999999888733333334457789999999998887654 35566663 3 455555544443
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.6e-13 Score=141.95 Aligned_cols=218 Identities=10% Similarity=0.023 Sum_probs=154.4
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
..|.+||.... ..+.+..|...+.+..|+|||+.|+..+. +..|.+||+.+++.. .+....+.+....|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 46778887532 22456678889999999999999988764 468999999888754 44445566778899999
Q ss_pred CCeEEE-EeCCC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-C--CeEEEEECCCCe-eeeeecCCc
Q 008717 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEV 443 (556)
Q Consensus 371 ~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d--~~I~i~d~~~~~-~~~~~~~~~ 443 (556)
|+.++. .+.++ .|++||+.++....+.... .......|+|||+.++..+. + ..|++||+.++. ..+......
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 998764 45555 4888899888776665543 35678999999998887764 3 368899988776 444444556
Q ss_pred eEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC------CcEEEE
Q 008717 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED------SQNVPE 514 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d------g~v~iw 514 (556)
+....|+|||++|+....+ ..|.+||+.++ . ...+... ... -...| +|||+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~~-~~~--~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTSG-FLV--EGPTW-APNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccCC-CCC--CCCeE-CCCCCEEEEEEccCCCCCcceEEEE
Confidence 7778999999999887654 36888898654 2 3333221 111 22445 9999998775543 368888
Q ss_pred EcCCCceee
Q 008717 515 ILLSESVAA 523 (556)
Q Consensus 515 d~~~~~~~~ 523 (556)
++.++....
T Consensus 410 dl~g~~~~~ 418 (435)
T PRK05137 410 DLTGRNERE 418 (435)
T ss_pred ECCCCceEE
Confidence 988776643
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=133.52 Aligned_cols=192 Identities=13% Similarity=0.160 Sum_probs=147.2
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCCCe---EEEeecccCCCe
Q 008717 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRI 404 (556)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v 404 (556)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++... ...+..+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888899999999999999999999999999999987 46778999999999999998532 233333333367
Q ss_pred eEEEEccCCCEEEEEeC----CCeEEEEECCCCe----eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCC-
Q 008717 405 SDMAITDDGKRIISICR----EAAILLLDREANF----ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDP- 474 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~~----d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~- 474 (556)
.+++.+-.++.+++|+. +-.|.+||.+..+ .....|...|+++.|+|. .++|++|+.||-|.|||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767778887753 5679999999877 344568999999999995 5889999999999999996541
Q ss_pred -cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 475 -KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 475 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
..+...-.|...+.. +.|.++.-+.|.+-+..++..+|++..+....
T Consensus 201 eDaL~~viN~~sSI~~--igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHL--IGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhhHHHhhcccceeee--eeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 222233344454433 44534444569999999999999999877543
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.2e-14 Score=143.41 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=187.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC---CEEEEEeCCCcEEEEEC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~ 346 (556)
|-...-..-.||+|+++++... +..|.||...++ .++..+.+|..++..+.+.|.. .++++++.||.|++||.
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg---~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~ 89 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATG---ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW 89 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchH---hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence 3333334456999999888775 458999999987 4556899999999999998854 47789999999999998
Q ss_pred CCCcEEEEEe----------------------------------------------------------------------
Q 008717 347 NSGECLHVYE---------------------------------------------------------------------- 356 (556)
Q Consensus 347 ~~~~~~~~~~---------------------------------------------------------------------- 356 (556)
..+..++++.
T Consensus 90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 7655333211
Q ss_pred ---------------------------------cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-----CeEEEeec
Q 008717 357 ---------------------------------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKG 398 (556)
Q Consensus 357 ---------------------------------~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~ 398 (556)
.|...+++.+++|+++++++|..||.|.+|.--+ .....+.-
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 1344568899999999999999999999996422 23334444
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCee-eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
|+. .|++++|+++|.+|++|+..+.+.+|.+.+++. .+....++|..+.+|||+.+.++...|+.|.+....+. ...
T Consensus 250 H~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k 327 (792)
T KOG1963|consen 250 HHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIK 327 (792)
T ss_pred ccc-ccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch-hhh
Confidence 544 899999999999999999999999999999984 44456889999999999999999999999999987654 333
Q ss_pred eEEeCccCc---------eeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 478 SRYKGHKRA---------RFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 478 ~~~~~~~~~---------~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
.++.|-... .....++. +|.-+.++-.+..|.|.+||+.+.+.+.
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~i-dpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSI-DPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred hhccCccCCCccccccccccceeEEE-cCCCCceeecCCCceEEEEeccccceee
Confidence 333322111 11122444 7766677778899999999998876654
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.7e-13 Score=141.69 Aligned_cols=216 Identities=14% Similarity=0.099 Sum_probs=150.5
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
..|.+||.... ..+.+..+...+.+..|+|||+.|+.++.+ ..|++||+.+++... +....+...+..|+||
T Consensus 184 ~~l~i~D~~g~----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGY----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCC----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 36888888633 223455677889999999999999988753 469999998887543 3333444557899999
Q ss_pred CCeEEE-EeCCC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-CC--eEEEEECCCCe-eeeeecCCc
Q 008717 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EA--AILLLDREANF-ERWIEEEEV 443 (556)
Q Consensus 371 ~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~--~I~i~d~~~~~-~~~~~~~~~ 443 (556)
|+.++. .+.+| .|++||+.++....+..+.. .....+|+|||+.++.++. ++ .|+++|+.++. ..+......
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 998764 45555 59999999887766554432 4567899999998887764 34 47777877766 333333444
Q ss_pred eEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC---CcEEEEEcC
Q 008717 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQNVPEILL 517 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d---g~v~iwd~~ 517 (556)
....+|+|||++|+..+.++ .|.+||+.++ +.. .+.... .. ....| +|||++|+..+.+ +.|+++++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~-~~--~~p~~-spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGS-LD--ESPSF-APNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCC-CC--CCceE-CCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998876443 5999999876 433 333221 11 22455 9999988877663 468888886
Q ss_pred CCce
Q 008717 518 SESV 521 (556)
Q Consensus 518 ~~~~ 521 (556)
++..
T Consensus 412 g~~~ 415 (433)
T PRK04922 412 GRVR 415 (433)
T ss_pred CCce
Confidence 5543
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=4.1e-14 Score=137.70 Aligned_cols=246 Identities=16% Similarity=0.197 Sum_probs=168.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee--EEEEEecCCCCCeEEEEe-----CCCCCEEEEEeCCCcEEEEEC
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSW-----SPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~-----s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.+....++-.|++|+..- ...+++|+...+... ...+.+....+ ..|=+| .|.+--++.|-.-|.|.+.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~-P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTS-PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCC-CceecccccccCCCCcceEEeeccCceEEecc
Confidence 344555555777777653 347889988732211 11111111112 223334 345667888888899999887
Q ss_pred CCCcEEEEEec----CCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC---------------C--------------e
Q 008717 347 NSGECLHVYEK----TGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG---------------R--------------E 392 (556)
Q Consensus 347 ~~~~~~~~~~~----~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~---------------~--------------~ 392 (556)
...+..+.+.. ....++++.|-| +...++++-.+|.+++||..- . .
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 65332222221 247899999999 455667777899999997631 0 0
Q ss_pred EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
+..|.... +.|+.++|+|||++||+.+.||.++|||..+.. .....--+...|++|||||+||++|++|.-|.||.+
T Consensus 283 v~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 283 VARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 11111122 368899999999999999999999999999877 333334567899999999999999999999999999
Q ss_pred CCCCcceeEEeCccCceeEEEEe--------------------------------ecCCCC-------------cEEEEe
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSC--------------------------------FGGFEQ-------------AFIASG 505 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~--------------------------------~~s~~~-------------~~l~sg 505 (556)
... +.+..-.+|...|..+... -++.++ -.+.+.
T Consensus 362 ~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 362 EER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred ccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 998 8999999999887774433 011112 236788
Q ss_pred eCCCcEEEEEcCCCceee
Q 008717 506 SEDSQNVPEILLSESVAA 523 (556)
Q Consensus 506 s~dg~v~iwd~~~~~~~~ 523 (556)
+.|-.+.+||+....+..
T Consensus 441 GqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 441 GQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccceEEEEecchhhccc
Confidence 889999999998665543
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.8e-15 Score=143.29 Aligned_cols=229 Identities=11% Similarity=0.139 Sum_probs=183.0
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
-..+.++.+|++|+.|+.-|.|-.+|+.+. .+...+. -...|.++.|-.+.+++|++ ....++|||- .|..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence 456889999999999999999999999875 3334433 34678999999888887775 4568999994 6777888
Q ss_pred EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 355 YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 355 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
++.+. .|..+.|.|.--.|++++..|.++.-|+.++++........+.+..|+-+|-+..+-+|...|+|.+|......
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 87554 58899999998889999999999999999887766665566689999999999999999999999999998887
Q ss_pred --eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-ccCceeEEEEeecCCCCcEEEEeeCCCcE
Q 008717 435 --ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQN 511 (556)
Q Consensus 435 --~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~sgs~dg~v 511 (556)
..+..|.++|.++++.++|+|+++.+.|..++|||+++. ..+.++.. |... .+.+ |..| +++.+....|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-~ql~t~~tp~~a~----~ls~-Sqkg--lLA~~~G~~v 356 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-YQLHTYRTPHPAS----NLSL-SQKG--LLALSYGDHV 356 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-cccceeecCCCcc----cccc-cccc--ceeeecCCee
Confidence 778899999999999999999999999999999999987 44444433 3322 1333 4333 3445555679
Q ss_pred EEE-EcCC
Q 008717 512 VPE-ILLS 518 (556)
Q Consensus 512 ~iw-d~~~ 518 (556)
.|| |...
T Consensus 357 ~iw~d~~~ 364 (545)
T KOG1272|consen 357 QIWKDALK 364 (545)
T ss_pred eeehhhhc
Confidence 999 4443
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.2e-12 Score=122.20 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=139.4
Q ss_pred cEEEEEEccCCCEEEEEeCC--CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 274 EVWFLQFSHDGKYLASSSKD--QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
.|.-+-||. .++|..+.+ +.+++.++..+.. +..+. ...+|.++.++. +.|+++-.+ .|+|||+++.+.
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~---ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT---ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCce---EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEeccccee
Confidence 455555654 455555443 4588888875422 22221 356788998864 467766655 599999999999
Q ss_pred EEEEecC---CCceEEEEEecCCCeEEEE--eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCe-E
Q 008717 352 LHVYEKT---GVGLISCGWFLDGGGIFAG--MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA-I 425 (556)
Q Consensus 352 ~~~~~~~---~~~v~~i~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-I 425 (556)
++++... ...+.++.+++.+.+++.- ...|.|.+||..+-+.......|.+.+.+++|+++|.+||+++..|+ |
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 8887644 3345555555556677753 24689999999876665556677779999999999999999999997 8
Q ss_pred EEEECCCCe--eeeee--cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 426 LLLDREANF--ERWIE--EEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 426 ~i~d~~~~~--~~~~~--~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
|||.+.+++ ..+.. ....|.+++|+|++++|++.+..++|++|.+..
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999988 22222 245689999999999999999999999998854
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.7e-13 Score=137.30 Aligned_cols=223 Identities=14% Similarity=0.118 Sum_probs=144.5
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
..|.+||.... ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+||
T Consensus 176 ~~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 34666665422 223455677889999999999999887753 359999999887643 3333445668899999
Q ss_pred CCeEEE-EeCCCcEEEE--ECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-CCeEEEE--ECCCCe-eeeeecCCc
Q 008717 371 GGGIFA-GMTDKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLL--DREANF-ERWIEEEEV 443 (556)
Q Consensus 371 ~~~l~~-~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~I~i~--d~~~~~-~~~~~~~~~ 443 (556)
|+.++. .+.+|...+| |+.++....+..+. .......|+|||+.++..+. ++...+| |+.++. .........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998874 5667765555 55666655554433 35677899999998886654 4555555 445544 233323334
Q ss_pred eEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC---cEEEEEcC
Q 008717 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QNVPEILL 517 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg---~v~iwd~~ 517 (556)
.....|||||++|+..+.++ .|.+||+.++ +. ..+..... . ....| +|||+.|+.++.++ .+++.++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~~~-~--~~p~~-spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QV-TALTDTTR-D--ESPSF-APNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCCCC-c--cCceE-CCCCCEEEEEEecCCCEEEEEEECC
Confidence 55689999999999877654 5999999876 43 33332221 1 22455 99999988877654 35555664
Q ss_pred CCceeeeecCCC
Q 008717 518 SESVAAAASSLD 529 (556)
Q Consensus 518 ~~~~~~~~~~~~ 529 (556)
+........+.
T Consensus 404 -g~~~~~l~~~~ 414 (427)
T PRK02889 404 -GRIKQRLSVQG 414 (427)
T ss_pred -CCceEEeecCC
Confidence 44444333333
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.9e-14 Score=130.16 Aligned_cols=273 Identities=13% Similarity=0.154 Sum_probs=190.4
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (556)
+++.+..+.+|.-........|......-..|.+.|.|++|....++|.+|+.+++|..-|+.+...+. +..-....+.
T Consensus 73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~-V~~~~~~~~~ 151 (609)
T KOG4227|consen 73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY-VANENNNRGD 151 (609)
T ss_pred ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee-eecccCcccc
Confidence 444555666676554433344433333334566899999999999999999999999999999764321 1122233458
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-EE--EEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeE--
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CL--HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGREL-- 393 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~--~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~-- 393 (556)
|+.+..+|..+.|++.+.++.|.+||.+... .. ...........++.|+|. ..+|++.+..+-+-+||++...-
T Consensus 152 VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 152 VYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 9999999999999999999999999997654 22 222234556788999995 55677888888999999975322
Q ss_pred EEeeccc-----CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-ee-eeec-------CCceEEEEEcCCCCEEEEE
Q 008717 394 ESWKGQK-----TLRISDMAITDDGKRIISICREAAILLLDREANF-ER-WIEE-------EEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 394 ~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~-~~~~-------~~~i~~v~~sp~~~~l~~~ 459 (556)
....... ...-..+.|+|+|+.+++.-....-.+||+-+.. .. ...| ...+.+++|-.|.. +++|
T Consensus 232 ~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tG 310 (609)
T KOG4227|consen 232 YQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATG 310 (609)
T ss_pred HhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eecc
Confidence 1111111 1123678899999998887666667788888765 22 2222 23467788876554 9999
Q ss_pred EcCCeEEEEEcCCC----------------------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 460 LINQEIHLWSIESD----------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 460 ~~dg~I~lwd~~~~----------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+.+-.|++|.+... .+.+..++||..-+.. +.| +|...+|++.+-.+.+++|.-.
T Consensus 311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ--VRF-~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ--VRF-SQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc--eee-cCCcceEeccchhhheeccccc
Confidence 99999999987432 0234557888876555 455 8899999999999999999643
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=140.78 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=156.6
Q ss_pred EEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCceEEEEEec--CCCeEEEEeCCCcEEEE
Q 008717 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICLW 386 (556)
Q Consensus 310 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vw 386 (556)
...+.+|++.|.|+.|+.||.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35688999999999999999999999999999999998777777664 7899999999999 56778899999999999
Q ss_pred ECCC----------CeEEEeecccCCCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCe---e---------eeeecCCc
Q 008717 387 DLDG----------RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF---E---------RWIEEEEV 443 (556)
Q Consensus 387 d~~~----------~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~---~---------~~~~~~~~ 443 (556)
|+.. .........|...|..++..|++ ..+.+++.||+|+-||++... . .+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9963 11112223344488889999998 789999999999999998743 0 01111234
Q ss_pred eEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC-------C----------cceeEE-eCcc--------CceeEEE-Eeec
Q 008717 444 ITSFSLSKDN-KYLLVNLINQEIHLWSIESD-------P----------KLVSRY-KGHK--------RARFVIR-SCFG 495 (556)
Q Consensus 444 i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~-------~----------~~~~~~-~~~~--------~~~~~i~-~~~~ 495 (556)
..++.++|.. .+|++|+.|-..++||.+.. . .++..| .+|- ..+.++. +.|
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf- 281 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF- 281 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE-
Confidence 6789999965 67999999999999994321 0 123333 2222 1122222 445
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+|+|.-|+..-....||++|+..++.
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99998777665566899999987654
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=3.2e-14 Score=126.80 Aligned_cols=230 Identities=15% Similarity=0.189 Sum_probs=166.0
Q ss_pred hccccceeecCCCCceeeecCCCCCCCCCCcceeEEec-ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEE
Q 008717 232 VQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK 310 (556)
Q Consensus 232 ~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~-~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 310 (556)
+|.+..+|.+...+.+.+|.-.+ ......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++..+... .+
T Consensus 22 fqa~~rL~sg~~~G~V~~w~lqt-------~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i-~i 92 (323)
T KOG0322|consen 22 FQANERLMSGLSVGIVKMWVLQT-------ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI-SI 92 (323)
T ss_pred hccchhhhcccccceEEEEEeec-------CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE-EE
Confidence 44555577777777777776443 23334455 46778888888887 45778889999999998641110 00
Q ss_pred EE-----------------------e----------------------------cCCCCCeEEEEeCC-CCC--EEEEEe
Q 008717 311 HR-----------------------L----------------------------SGHRKPVFTVSWSP-NDH--QLLTCG 336 (556)
Q Consensus 311 ~~-----------------------~----------------------------~~h~~~v~~l~~s~-~~~--~l~s~~ 336 (556)
+. + .+..+.+.|..|.. ++. .+++|-
T Consensus 93 ~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGy 172 (323)
T KOG0322|consen 93 HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGY 172 (323)
T ss_pred eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEec
Confidence 00 0 01123455555432 222 456677
Q ss_pred CCCcEEEEECCCCcEE----------EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--C--eEEEeecccCC
Q 008717 337 QEEAIRRWDVNSGECL----------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--R--ELESWKGQKTL 402 (556)
Q Consensus 337 ~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~ 402 (556)
.+|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|+++. + ++.........
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 7999999999998433 33346788999999988666667888888899999852 2 22222222333
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 403 RISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
.|..+.+-||++.+++++.|+.|++|..++.. ..+..|...|++++|+|+...+|.++.|+.|.+|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 79999999999999999999999999999988 667778999999999999999999999999999986
No 218
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1e-15 Score=155.59 Aligned_cols=210 Identities=14% Similarity=0.229 Sum_probs=165.3
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
+.++.+.+|.++|+|+.|...|.++++|+.|..++||.+.++.++....+|.+.|+.++.+.+..++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee------ecCC-------------------
Q 008717 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI------EEEE------------------- 442 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~------~~~~------------------- 442 (556)
+..+....+..+|.+.|++++|+|-. +.+.||++++||.+-....+. ....
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99888888888888899999999964 678999999999881110000 0001
Q ss_pred -------ceEEEEEcCCC-----------CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEE
Q 008717 443 -------VITSFSLSKDN-----------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 443 -------~i~~v~~sp~~-----------~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
.+..++|...+ .+.+++-.+..+.+|++.++ .+.+.+.+|...++++.+..+ +.....+
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf--n~ri~ms 413 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF--NPRIAMS 413 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--CcHhhhh
Confidence 11112222222 23333444567889999998 889999999999998666432 3455678
Q ss_pred eeCCCcEEEEEcCCCceeee
Q 008717 505 GSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~~ 524 (556)
++.||...|||+..|.+...
T Consensus 414 ag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ccCCCceEeeecccCCccee
Confidence 99999999999988776543
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=3.8e-13 Score=138.23 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=161.0
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCCcE--EEE----EecCCCceEEE
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC--LHV----YEKTGVGLISC 365 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~i 365 (556)
++.+.||++..... +...+. -...|.|++|+| +..+++.|..+|.|.+||++.+.. ... ...|..+++.+
T Consensus 221 ~~~~~vW~~~~p~~--Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT--PELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred CceEEEEecCCCCC--ceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 35799999986532 333332 467899999999 567788888899999999987654 222 23578899999
Q ss_pred EEecCCCe--EEEEeCCCcEEEEECCCCeE------EEeec------ccCCCeeEEEEccC-CCEEEEEeCCCeEEEEEC
Q 008717 366 GWFLDGGG--IFAGMTDKSICLWDLDGREL------ESWKG------QKTLRISDMAITDD-GKRIISICREAAILLLDR 430 (556)
Q Consensus 366 ~~~~~~~~--l~~~~~dg~i~vwd~~~~~~------~~~~~------~~~~~v~~v~~s~~-g~~l~~~~~d~~I~i~d~ 430 (556)
.|..+..- |++++.||.|..|+++.-.. ..... .....+++++|.+. -..+++|+.+|.|.--+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 99875444 99999999999999863111 01111 22237899999884 457999999999888554
Q ss_pred CCCe----------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCC-
Q 008717 431 EANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ- 499 (556)
Q Consensus 431 ~~~~----------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~- 499 (556)
.... .....|.++|+++.++|=+..++..+.|.+++||.-.....++..+..+...++. +.| ||..
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~--vaW-Sptrp 454 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD--VAW-SPTRP 454 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeee--eEE-cCcCc
Confidence 4332 2455688999999999977555544449999999987232777777777766544 555 6654
Q ss_pred cEEEEeeCCCcEEEEEcCCCcee
Q 008717 500 AFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
..++++..||.|.+||+......
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred eEEEEEcCCCceehhhhhccccC
Confidence 56778888999999999765443
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=133.48 Aligned_cols=219 Identities=20% Similarity=0.267 Sum_probs=153.3
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEECCCCcEEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 355 (556)
-++|||+|+++|+++.- .+.|-|..+- +..+.+. .-..|..+.|..|..+++.+ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 47899999999999755 6777776542 2222222 23568889999988776654 56889999999998888899
Q ss_pred ecCCCceEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 356 EKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
.....++.+++|+|||+.++. ...+-.|.+|.+.++....+...+. .+..++|+|||++.+..+.....-.+.+...+
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 988999999999999976655 5568899999999877766655444 67999999999998887764222222222111
Q ss_pred -----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 435 -----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 435 -----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
..+....-..+.+.|+|||..|++ ||---. -.+..+.-.- + +....|+|.+++|+.|+.|+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Le-ykv~aYe~~l-G---~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLE-YKVYAYERGL-G---LKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhh-heeeeeeecc-c---eeEEEeccccceEEeeccch
Confidence 222334556788999999988875 442211 1111221111 1 33344499999999999999
Q ss_pred cEEEEE
Q 008717 510 QNVPEI 515 (556)
Q Consensus 510 ~v~iwd 515 (556)
.++|-+
T Consensus 233 ~lrvln 238 (447)
T KOG4497|consen 233 MLRVLN 238 (447)
T ss_pred hhhhhc
Confidence 998854
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=3.1e-13 Score=122.89 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=111.7
Q ss_pred EEEEeCCCCCEEEEEeC---C-------CcEEEEECCC-CcEEEEEec-CCCceEEEEEecCCCeEEEE--eCCCcEEEE
Q 008717 321 FTVSWSPNDHQLLTCGQ---E-------EAIRRWDVNS-GECLHVYEK-TGVGLISCGWFLDGGGIFAG--MTDKSICLW 386 (556)
Q Consensus 321 ~~l~~s~~~~~l~s~~~---d-------g~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~--~~dg~i~vw 386 (556)
..+.|+|+|++|+.-.. | +...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988765433 1 3355555522 233444433 34579999999999997664 356799999
Q ss_pred ECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEc--
Q 008717 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI-- 461 (556)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~-- 461 (556)
|++...+..+.. ..++.+.|+|+|+++++++.+ |.|.+||.++.+.........++.++|+|||+++++++.
T Consensus 89 d~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 998766665542 368899999999999998754 679999999877333334445789999999999999874
Q ss_pred ----CCeEEEEEcCCCCcceeE
Q 008717 462 ----NQEIHLWSIESDPKLVSR 479 (556)
Q Consensus 462 ----dg~I~lwd~~~~~~~~~~ 479 (556)
|+.++||+... +.+..
T Consensus 166 r~~~dng~~Iw~~~G--~~l~~ 185 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQG--RLLYK 185 (194)
T ss_pred ceeccccEEEEEecC--eEeEe
Confidence 67899999854 44444
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=3.1e-12 Score=117.34 Aligned_cols=235 Identities=10% Similarity=0.122 Sum_probs=160.4
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC--eEEEEeCCCCCEEEEEe-CC------CcEEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP--VFTVSWSPNDHQLLTCG-QE------EAIRRW 344 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~s~~-~d------g~i~iw 344 (556)
...+++|+.|..-++.|..+| .+||+.+- ++.......+.+. +.-+-| -.++|+-.+ .+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P---~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDP---FKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCc---hhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999887665 79998862 1111111112222 222222 234554333 22 469999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--CeEEEeeccc-CCCeeEEEEccCCCEEEE-Ee
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--RELESWKGQK-TLRISDMAITDDGKRIIS-IC 420 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~-~~~v~~v~~s~~g~~l~~-~~ 420 (556)
|=...+++.++. ...+|.++.+.++ .|++.-. +.|++|.... +.+..+.... .....+++-+.+...|+. |-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 976677777776 4567999999754 5666554 7899999863 3333332222 112333332223334444 33
Q ss_pred CCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCe-EEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 421 REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 421 ~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~-I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
.-|.|.|-|+...+ .....|...|.|++++.+|..+|+++..|+ |+|||..++ ..+..++.....-....+.|
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaF- 234 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAF- 234 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEe-
Confidence 56899999998765 456789999999999999999999999998 899999999 88888876655444444666
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
||+..+||++|+.|+|+|+.++...
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999999988644
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.7e-13 Score=124.50 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=139.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEECCCC---
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSG--- 349 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~--- 349 (556)
.+..++|++.-..+|++..|-.|++||-.... ...++ ......|+|++|-|.+. .|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lk--s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLK--SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCC-Cceec--chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 46678888865668889999999999987531 11111 22346799999999664 5555555 56999986421
Q ss_pred -cE--------EEEE--ecCCCceEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 350 -EC--------LHVY--EKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 350 -~~--------~~~~--~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
+. ...+ .+ ..+|+++.|.+||..+++++. |..|.+||.+++....+.....+.++-+.|||||.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1112 23 368999999999999999885 56899999998766655545555899999999999999
Q ss_pred EEeCCCeEEEEECCC-Ce-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 418 SICREAAILLLDREA-NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~-~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
+++-|+..++|+... .. .+..-..+.|...+|+|+|++|+..+ .|.-++|.+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl 308 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL 308 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence 999999999995443 33 55666667999999999999887766 333445554
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=4.9e-13 Score=123.58 Aligned_cols=248 Identities=18% Similarity=0.289 Sum_probs=178.4
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC--eeEEEEEecCCC------------CCeEEEEeCCCC--CEEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHR------------KPVFTVSWSPND--HQLLT 334 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s 334 (556)
..+-|.++.|...|.+||||..+|.|.++.-.... .......++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568899999999999999999999999765321 333455565564 358889998865 46777
Q ss_pred EeCCCcEEEEECCCCcE-----------------------------------EEEE-ecCCCceEEEEEecCCCeEEEEe
Q 008717 335 CGQEEAIRRWDVNSGEC-----------------------------------LHVY-EKTGVGLISCGWFLDGGGIFAGM 378 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~i~~~~~~~~l~~~~ 378 (556)
.+.|.+|++|.+..... .+.+ ..|.--|+++.++.|...++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 78899999998853211 0111 14667789999999988888764
Q ss_pred CCCcEEEEECCC----CeEEEeecccC----CCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCe-----eeee------
Q 008717 379 TDKSICLWDLDG----RELESWKGQKT----LRISDMAITDDG-KRIISICREAAILLLDREANF-----ERWI------ 438 (556)
Q Consensus 379 ~dg~i~vwd~~~----~~~~~~~~~~~----~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~-----~~~~------ 438 (556)
|=.|.+|+++- -.+..+.+... .-|++..|+|.. +.++..+..|+|++-|++... ..+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56799999862 22333333221 257889999964 578888899999999999432 1111
Q ss_pred -------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC------------cee-EEEEeecCCC
Q 008717 439 -------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARF-VIRSCFGGFE 498 (556)
Q Consensus 439 -------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~------------~~~-~i~~~~~s~~ 498 (556)
+--..|..+.|+++|+|+++-. --+|++||+....+++.+++.|.. .++ -..++| +-+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW-SGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE-cCC
Confidence 1234688899999999999865 368999999655588888887763 111 134566 788
Q ss_pred CcEEEEeeCCCcEEEEEcCCCce
Q 008717 499 QAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.+++||+..+.++++++..|..
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred cceEecccccceEEEecCCCCcc
Confidence 88999999999999999765543
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.2e-13 Score=126.15 Aligned_cols=247 Identities=18% Similarity=0.220 Sum_probs=179.4
Q ss_pred cCCcEEEEEEccCCC--EEEEEeCCCcEEEEEeecCCeeEE---EEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 271 HSDEVWFLQFSHDGK--YLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 271 h~~~V~~~~~sp~g~--~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
....|..++|..+++ .+...+.|..+..+.+...+.... ........++|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 445677888877655 455555676777777664322111 12334456677777664 45788899999999999
Q ss_pred CCCCc----EEEEEecCCCceEEEEEecCCCe-EEEEeCC--CcEEEEECCCCeEEEeeccc--C--------CCeeEEE
Q 008717 346 VNSGE----CLHVYEKTGVGLISCGWFLDGGG-IFAGMTD--KSICLWDLDGRELESWKGQK--T--------LRISDMA 408 (556)
Q Consensus 346 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d--g~i~vwd~~~~~~~~~~~~~--~--------~~v~~v~ 408 (556)
...+. .+..+..+ .++..+.-++.... +++|+.. ..+.+||++.. .+.|.... . -.++++.
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccce
Confidence 98543 23333333 44666666665444 4558887 78999999865 22232211 1 1567889
Q ss_pred EccC--CCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee-EEeC
Q 008717 409 ITDD--GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS-RYKG 482 (556)
Q Consensus 409 ~s~~--g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~-~~~~ 482 (556)
|.+. ...|++++.-+.+++||.+.++ ..+.-...+|+++...|+++++++|..-+.+..||++.+ +... .+.+
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-kl~g~~~kg 288 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-KLLGCGLKG 288 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc-eeeccccCC
Confidence 9887 7899999999999999999877 455556889999999999999999999999999999998 5554 4888
Q ss_pred ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 483 HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
-.+.+..|.+ +|.++++++++-|..|+|+|+.+.+++...
T Consensus 289 ~tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 289 ITGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ccCCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8888666544 889999999999999999999997775543
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=3.9e-13 Score=122.17 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=109.5
Q ss_pred EEEEEecCCCeEEEEeC----------CCcEEEEEC--CCCeEEEeecccCCCeeEEEEccCCCEEEEE--eCCCeEEEE
Q 008717 363 ISCGWFLDGGGIFAGMT----------DKSICLWDL--DGRELESWKGQKTLRISDMAITDDGKRIISI--CREAAILLL 428 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~----------dg~i~vwd~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~--~~d~~I~i~ 428 (556)
..+.|+|+|++|++-.. -+...+|.+ ++.....+.....++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988776433 123444444 4555555554444579999999999987654 356799999
Q ss_pred ECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 429 d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
|++....... +...++.+.|+|+|++|++++.+ |.|.+||+++. +.+.+... .. ...+.| +|||++++++
T Consensus 89 d~~~~~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~~-~~---~t~~~W-sPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFEH-SD---ATDVEW-SPDGRYLATA 161 (194)
T ss_pred cCcccEeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeecccc-Cc---EEEEEE-cCCCCEEEEE
Confidence 9984443333 45678899999999999998754 67999999987 77766643 22 234566 9999999988
Q ss_pred eC------CCcEEEEEcCCCce
Q 008717 506 SE------DSQNVPEILLSESV 521 (556)
Q Consensus 506 s~------dg~v~iwd~~~~~~ 521 (556)
+. |+.++||++.+..+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EeccceeccccEEEEEecCeEe
Confidence 74 78999999975544
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.3e-13 Score=132.42 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=171.9
Q ss_pred cCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCCeeEEE--------------------------EEecCCC------
Q 008717 271 HSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLK--------------------------HRLSGHR------ 317 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~h~------ 317 (556)
|....+.|..+|||+|+ |+|..--.|++||+..- .++.- ..+.-|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 66677789999999985 56778889999998731 00000 0011111
Q ss_pred -----CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 008717 318 -----KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (556)
Q Consensus 318 -----~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~ 392 (556)
..-..++++.-..-|+.++....|+-.++..|+.+..+....+.++++..++-...|++|+.+|.|..||.+.+.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111233333323335555666689999999999999999888999999999988899999999999999998644
Q ss_pred EEEeecc-----------cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee--cCCceEEEEEcCCC--CEE
Q 008717 393 LESWKGQ-----------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE--EEEVITSFSLSKDN--KYL 456 (556)
Q Consensus 393 ~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~--~~~~i~~v~~sp~~--~~l 456 (556)
....... ....|+++.|+.+|-.+++|+.+|.|.|||+++.+ ..... ..-+|..+.|.+.+ ..+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 3222111 11249999999999999999999999999999988 33333 35678999997753 444
Q ss_pred EEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
++.. ...++|||-.++ +....+..... +.. .|+ -|++.+++++-+++.+..|=+..
T Consensus 289 ~S~D-k~~~kiWd~~~G-k~~asiEpt~~-lND--~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 289 VSMD-KRILKIWDECTG-KPMASIEPTSD-LND--FCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred Eecc-hHHhhhcccccC-CceeeccccCC-cCc--eee-ecCCceEEEecCCCcceeEEccc
Confidence 4433 567999999888 77766654444 333 566 57888999999998877775543
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=4e-12 Score=131.47 Aligned_cols=214 Identities=16% Similarity=0.146 Sum_probs=148.7
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
..|.++|..... .+.+..+...+...+|+|||++|+.++.+ ..|++||+.+++.... ..+...+.+++|+||
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 357777765321 23445566778999999999999987754 4799999998865433 334455677899999
Q ss_pred CCeEEEE-eCCC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCe-eeeeecCCc
Q 008717 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (556)
Q Consensus 371 ~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~I~i~d~~~~~-~~~~~~~~~ 443 (556)
|+.|+.. +.++ .|++||+.++....+.... .......|+|||+.|+..+.. + .|+++|+.++. ..+..+...
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 9987654 4443 5999999887766655443 245678999999988776543 2 68888988776 444445666
Q ss_pred eEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC---cEEEEEcC
Q 008717 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QNVPEILL 517 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg---~v~iwd~~ 517 (556)
+..+.|+|+|++++.++.++ .|.+||+.++ . ...+...... ....| +|||++|+..+.++ .+++.+..
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~---~~p~~-spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDTGLD---ESPSF-APNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCCCCC---CCceE-CCCCCEEEEEEeCCCcEEEEEEECC
Confidence 78899999999999988776 7999998875 3 2333322211 22345 99999888877754 45555654
Q ss_pred CC
Q 008717 518 SE 519 (556)
Q Consensus 518 ~~ 519 (556)
.+
T Consensus 398 g~ 399 (417)
T TIGR02800 398 GR 399 (417)
T ss_pred Cc
Confidence 43
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=7.6e-13 Score=140.33 Aligned_cols=214 Identities=12% Similarity=0.139 Sum_probs=160.1
Q ss_pred EEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeC
Q 008717 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 379 (556)
..+..+..|...|..++.++.. .++++||.||+|++||.+. .+...++....+.+.++...+.++.+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 5667788899999999888755 9999999999999999853 1234455556778899999999999999999
Q ss_pred CCcEEEEECCCCe--------EEEeecccCCCeeEE-EEcc-CCC-EEEEEeCCCeEEEEECCCCe----eeeeecCCce
Q 008717 380 DKSICLWDLDGRE--------LESWKGQKTLRISDM-AITD-DGK-RIISICREAAILLLDREANF----ERWIEEEEVI 444 (556)
Q Consensus 380 dg~i~vwd~~~~~--------~~~~~~~~~~~v~~v-~~s~-~g~-~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i 444 (556)
||.|.+.+++-.. .+.......+.+.+| +|.. ++. .++.+..-+.|..||.++.. .+.....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 9999999986411 111112222233333 4433 233 67788888999999999876 3444567889
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe-CccCceeEEEEeecCCCCcEEEEee--CCCcEEEEEcCCCce
Q 008717 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGS--EDSQNVPEILLSESV 521 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~~~~~ 521 (556)
++++.+|.+.++++|+..|.+.+||++-+ .++..+. ++...+..+.+++..+.....++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999987 6776653 3344566667777677666666555 477899999998854
Q ss_pred e
Q 008717 522 A 522 (556)
Q Consensus 522 ~ 522 (556)
.
T Consensus 1278 ~ 1278 (1431)
T KOG1240|consen 1278 Q 1278 (1431)
T ss_pred e
Confidence 3
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.8e-12 Score=132.97 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=144.7
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQE 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d 338 (556)
...+.+..+...+...+|||||+.|+..+.+ ..|.+|++.++.. . .+....+.+....|+|||+.|+. .+.+
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 3345566677889999999999999877643 3688899986532 2 23333444567899999998874 4445
Q ss_pred C--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CC--cEEEEECCCCeEEEeecccCCCeeEEEEccCC
Q 008717 339 E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 339 g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
| .|++||+.+++.. .+..+........|+|||+.++..+. +| .|+++|+.++....+.... .......|+|||
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg 342 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADG 342 (430)
T ss_pred CCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCC
Confidence 5 5888899887754 34445555667889999998877664 33 5888888776665544322 234567899999
Q ss_pred CEEEEEeCCC---eEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCc
Q 008717 414 KRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 414 ~~l~~~~~d~---~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~ 483 (556)
+.++..+.++ .|.+||+.++..+............|+|||++++..+.+ ..|.++++... ....+..+
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~ 416 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTA 416 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCC
Confidence 9988776532 588999988774333333333467899999999887654 34777777543 33444433
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=9.9e-11 Score=117.21 Aligned_cols=252 Identities=14% Similarity=0.219 Sum_probs=170.3
Q ss_pred cCCcEEEEEEccCCCEEEEEeC----CCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSK----DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRW 344 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw 344 (556)
-......++++|++++|.+... ++.|..|.+... +.+..+............++++|++++|+++.. +|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3445667899999999998866 579999999876 666666666544455678999999999999886 7899999
Q ss_pred ECCC-CcEEEE---Ee----------cCCCceEEEEEecCCCeEEEEeC-CCcEEEEECCCCe--E---EEeecccCCCe
Q 008717 345 DVNS-GECLHV---YE----------KTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRE--L---ESWKGQKTLRI 404 (556)
Q Consensus 345 d~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~--~---~~~~~~~~~~v 404 (556)
++.. |..... +. .......++.|+|+++++++... ...|.+|+++... + ...........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 9976 443322 21 12355788999999999888764 3479999996533 3 22333444578
Q ss_pred eEEEEccCCCEEEEEe-CCCeEEEEECC--CCee---eeee-------cCCceEEEEEcCCCCEEEEEEc-CCeEEEEEc
Q 008717 405 SDMAITDDGKRIISIC-REAAILLLDRE--ANFE---RWIE-------EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSI 470 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~-~d~~I~i~d~~--~~~~---~~~~-------~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~ 470 (556)
+.++|+|+++++++.. .++.|.+|++. ++.. .... .......+.++|||++|+++.. .+.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 9999999999876655 57789999988 4331 1111 1125788999999999888764 568999999
Q ss_pred CCC-Ccc--eeEEeCccCceeEEEEeecCCCCcEEEEee-CCCcEEEEEc--CCCceeeee
Q 008717 471 ESD-PKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQNVPEIL--LSESVAAAA 525 (556)
Q Consensus 471 ~~~-~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~--~~~~~~~~~ 525 (556)
... ..+ +..+..... .-..+.+ +|+|++|+++. .++.|.+|++ .+|.+....
T Consensus 275 d~~~g~l~~~~~~~~~G~--~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGK--FPRHFAF-SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp CTTTTTEEEEEEEEESSS--SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 322 122 222222111 1233555 99999998877 4678999976 477765554
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=2e-11 Score=122.21 Aligned_cols=270 Identities=11% Similarity=0.078 Sum_probs=171.3
Q ss_pred CCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE
Q 008717 243 SDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322 (556)
Q Consensus 243 ~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 322 (556)
.+..+.+.+..+ .+.+..+......-..+.|+|||+++++++.||.|.++|+.+.. .+.++.... ...+
T Consensus 14 ~~~~v~viD~~t-------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 14 GSGSVAVIDGAT-------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKVGG-NPRG 82 (369)
T ss_dssp GGTEEEEEETTT--------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE-SS-EEEE
T ss_pred CCCEEEEEECCC-------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEecCC-Ccce
Confidence 344555554332 56677777655544557899999999999999999999999763 455555443 4578
Q ss_pred EEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEecC-------CCceEEEEEecCCCeEEEEeCC-CcEEEEECCC-Ce
Q 008717 323 VSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMTD-KSICLWDLDG-RE 392 (556)
Q Consensus 323 l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~d-g~i~vwd~~~-~~ 392 (556)
+++|+||+++++++ ..+.+.++|..+.+.++.+... ...+..+..+|....++..-.| +.|.+.|... ..
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999776 4789999999999998887643 3457788888888867666554 7888888754 22
Q ss_pred EEEeecccCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCe-eeee--------------ec----------------
Q 008717 393 LESWKGQKTLRISDMAITDDGKRIISI-CREAAILLLDREANF-ERWI--------------EE---------------- 440 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~I~i~d~~~~~-~~~~--------------~~---------------- 440 (556)
+...............|+|++++++++ ..++.|.++|..+++ .... .|
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 222222222368899999999987664 456678888877654 1000 00
Q ss_pred -------------------------CCceEEEEEcCCCCEEEEE----EcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 441 -------------------------EEVITSFSLSKDNKYLLVN----LINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 441 -------------------------~~~i~~v~~sp~~~~l~~~----~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
.+.-.-+..+|+++++.+. ...+.|.++|.++. +.+.++....+ ...+.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i~~~~~-~~~~h 320 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTITPGPG-KRVVH 320 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-HHHHHT---EEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEEeccCC-CcEec
Confidence 0111235679999999998 33478999999988 77777654333 11455
Q ss_pred EeecCCCCcEEEEeeCC--CcEEEEEcCCCceeeeec
Q 008717 492 SCFGGFEQAFIASGSED--SQNVPEILLSESVAAAAS 526 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~d--g~v~iwd~~~~~~~~~~~ 526 (556)
.-| +++|+.+..+..+ +.|.|||..+.++.....
T Consensus 321 ~ef-~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 321 MEF-NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE--TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cEE-CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 777 9999977665543 469999999998877665
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=9e-14 Score=135.33 Aligned_cols=140 Identities=18% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCcEEEEEEccCC-CEEEEEeCCCcEEEEEeec--------------CCeeE-----------EEEEecCCCCCeEEEEe
Q 008717 272 SDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKE--------------DGQVS-----------LKHRLSGHRKPVFTVSW 325 (556)
Q Consensus 272 ~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~--------------~~~~~-----------~~~~~~~h~~~v~~l~~ 325 (556)
+..|+|+.|-|.+ ..++++-.+|.+++||..- +..+. ++..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3789999999944 4555666899999997631 11111 11122223457889999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCee
Q 008717 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (556)
Q Consensus 326 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 405 (556)
+|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|+.|.-|.||.+..+++...-..|.+.|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888888877778899999999999999999999999999999888888888888999
Q ss_pred EEEEcc
Q 008717 406 DMAITD 411 (556)
Q Consensus 406 ~v~~s~ 411 (556)
.++|+|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999985
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=2.5e-12 Score=132.98 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=144.4
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQE 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d 338 (556)
...+.+..+...+.+.+|+|||++|+.++.+ ..|++||+.++.. ..+..+.+.+.+++|+|||+.|+.. +.+
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEECCCCCEEEEEECCC
Confidence 3345566677789999999999999987644 4799999986532 2233455667789999999977654 444
Q ss_pred C--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-C--cEEEEECCCCeEEEeecccCCCeeEEEEccCC
Q 008717 339 E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 339 g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
+ .|++||+.++... .+..+........|+|||+.|+.++.. + .|+++|+.++....+.... ..+..+.|+|+|
T Consensus 256 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg 333 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDG 333 (417)
T ss_pred CCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECCCC
Confidence 4 5999999877643 333444445567899999998876643 3 6888898877665554333 367788999999
Q ss_pred CEEEEEeCCC---eEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEEcC
Q 008717 414 KRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIE 471 (556)
Q Consensus 414 ~~l~~~~~d~---~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd~~ 471 (556)
++++.++.++ .|.+||+.++...............|+|||++|+..+.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 9999888776 7999999886644333333445678999999998887654 35555543
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6e-12 Score=130.17 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=139.9
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCC-C--cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeCCCc-
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKD-Q--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEA- 340 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~- 340 (556)
+.+..+...+.+..|||||+.|+..+.+ + .|.+||+.++.. ..+..+ .+......|+|||+.|+. .+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 4455567788999999999999876543 3 578888876532 222222 333457899999998875 455664
Q ss_pred -EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEE
Q 008717 341 -IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 341 -i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
|++||+.+++.. .+..+........|+|||+.++..+. ++ .|+++|+.+++...+..... .....+|+|||+++
T Consensus 287 ~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l 364 (448)
T PRK04792 287 EIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSM 364 (448)
T ss_pred EEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEE
Confidence 888898877654 34445555677899999998877654 33 57777887776655542221 34567999999988
Q ss_pred EEEeCC-C--eEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccC
Q 008717 417 ISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 417 ~~~~~d-~--~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
+..+.+ + .|.++|+.++...............|+|||++|+..+.++ .+++++.. + .....+..+.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g 437 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQG 437 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCC
Confidence 776553 3 4677888887633322222233568999999988766543 37777764 3 45555654433
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.8e-11 Score=126.95 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=144.5
Q ss_pred cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEecCC
Q 008717 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (556)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 371 (556)
.|.++|.... . .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||
T Consensus 180 ~l~~~d~~g~-~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA-R---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC-C---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 3666666532 1 23445567789999999999999887654 369999999887543 33333445578999999
Q ss_pred CeEEE-EeCCC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-C--CeEEEEECCCCe-eeeeecCCce
Q 008717 372 GGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEVI 444 (556)
Q Consensus 372 ~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d--~~I~i~d~~~~~-~~~~~~~~~i 444 (556)
+.++. .+.+| .|++||++++....+.... .......|+|||+.++..+. + ..|+++|+.++. ..+.......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98875 44444 6888999988776655433 25667899999998876654 3 358888887776 3333223334
Q ss_pred EEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC---CcEEEEEcCC
Q 008717 445 TSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQNVPEILLS 518 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d---g~v~iwd~~~ 518 (556)
....|+|||++|+..+.++ .|.+||+.++ +. ..+...... ....| +|||+.|+..+.+ ..|+++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~~~~~---~~p~~-spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTDTSLD---ESPSV-APNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCC-CE-EEccCCCCC---CCceE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 5678999999998876532 5888999876 33 333321111 12455 9999998877654 3577778765
Q ss_pred Cce
Q 008717 519 ESV 521 (556)
Q Consensus 519 ~~~ 521 (556)
+..
T Consensus 408 ~~~ 410 (430)
T PRK00178 408 RVR 410 (430)
T ss_pred Cce
Confidence 443
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.1e-11 Score=126.12 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=140.5
Q ss_pred cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-C--cEEEEECCCCcEEEEEecCCCceEEEEEecCC
Q 008717 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (556)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 371 (556)
.+.++|....+ .+.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++.... ...........|+|||
T Consensus 199 ~l~i~d~dG~~----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYN----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCC----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 56666765321 13445567788999999999999877543 2 589999988875332 2223334568999999
Q ss_pred CeEEE-EeCCCc--EEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-C--CeEEEEECCCCe-eeeeecCCce
Q 008717 372 GGIFA-GMTDKS--ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEVI 444 (556)
Q Consensus 372 ~~l~~-~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d--~~I~i~d~~~~~-~~~~~~~~~i 444 (556)
+.|+. .+.+|. |+++|+.+++...+.... ......+|+|||+.++..+. + ..|+++|+.+++ ..........
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98875 455664 888899887776665543 25678899999998876654 3 357778887776 3332233334
Q ss_pred EEEEEcCCCCEEEEEEcC-C--eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC-C--cEEEEEcCC
Q 008717 445 TSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-S--QNVPEILLS 518 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~d-g--~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d-g--~v~iwd~~~ 518 (556)
...+|+|||++|+..+.+ + .|.++|+.++ +. ..+...... ....| +|||+.|+..+.+ | .+++++...
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~~d---~~ps~-spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTRLD---ESPSV-APNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCCCC---CCceE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 567999999998877653 3 4666787776 33 333322111 12345 9999988766553 3 377778754
Q ss_pred Cc
Q 008717 519 ES 520 (556)
Q Consensus 519 ~~ 520 (556)
+.
T Consensus 427 ~~ 428 (448)
T PRK04792 427 RF 428 (448)
T ss_pred Cc
Confidence 43
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=5.9e-11 Score=109.08 Aligned_cols=230 Identities=17% Similarity=0.234 Sum_probs=148.1
Q ss_pred HhhccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEE-EeCC------CcEEEEEee
Q 008717 230 LDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLAS-SSKD------QSAIIWEVK 302 (556)
Q Consensus 230 ~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las-~s~d------g~i~iwd~~ 302 (556)
+.+.++..-|....+..+.++.-..... ...-+-+.+.+.-+..--..++||. |+.+ ..|.|||-.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke-------~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKE-------SASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhh-------hhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 3445555556667777777775433111 0011111111111111113345553 3332 579999943
Q ss_pred cCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCC--CceEEEEEecCCCeEEE-Ee
Q 008717 303 EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTG--VGLISCGWFLDGGGIFA-GM 378 (556)
Q Consensus 303 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~-~~ 378 (556)
.. .++.++. ...+|.++.+.++ .|++.- .+.|+||... +-+.++.+.... ..+.+++-..+...|+. |-
T Consensus 84 k~---~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 84 KE---RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cC---cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 22 4445544 5678999999865 555544 4689999987 446666665332 23433333323344444 44
Q ss_pred CCCcEEEEECCCCeE--EEeecccCCCeeEEEEccCCCEEEEEeCCCe-EEEEECCCCe--eeee--ecCCceEEEEEcC
Q 008717 379 TDKSICLWDLDGREL--ESWKGQKTLRISDMAITDDGKRIISICREAA-ILLLDREANF--ERWI--EEEEVITSFSLSK 451 (556)
Q Consensus 379 ~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-I~i~d~~~~~--~~~~--~~~~~i~~v~~sp 451 (556)
.-|.|.+-|+..... ......|...|.|++.+.+|..+|+++..|+ |+|||..++. ..+. .....|.+++|||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 668999999975544 3455566669999999999999999999998 8999999998 2222 2356799999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCC
Q 008717 452 DNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 452 ~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
++.+|++++..|+++||.++..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999998753
No 239
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.2e-14 Score=145.51 Aligned_cols=282 Identities=14% Similarity=0.136 Sum_probs=199.1
Q ss_pred cchHHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 008717 219 EKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAII 298 (556)
Q Consensus 219 ~~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~i 298 (556)
+..|..++.+.+..|...|....+....++++..|.|.......+....+.+..+.= -.+++-+ -+-.+..|....
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r--el~~~y~-gV~g~~~dr~~I- 1087 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR--ELQSFYS-GVHGNRRDRQFI- 1087 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch--hhcCccc-ccccCcccchhh-
Confidence 457889999999999999998888888999999999975322222111111111100 0011111 011112222211
Q ss_pred EEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe
Q 008717 299 WEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (556)
Q Consensus 299 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 378 (556)
| ..++..+.+..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|++.|+.+.-+.||...++.+
T Consensus 1088 F-----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1088 F-----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred H-----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec
Confidence 1 12345567788999999999999999999999999999999999999999999999999999888999888766
Q ss_pred CCC--cEEEEECCC--CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeee----ecCCceEEEE
Q 008717 379 TDK--SICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI----EEEEVITSFS 448 (556)
Q Consensus 379 ~dg--~i~vwd~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~----~~~~~i~~v~ 448 (556)
.-. -..+|++.. +....+ ..-.++.|+.....-+.|+......+||++++. .++. .....-++..
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCchHHHhccccccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 543 467899864 222222 245678888776656667777789999999987 2222 2233347889
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 449 ~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
|+|+..+++- ||. +||++.. +.++.|...... +.-.| +|+|.-++.-++ |||+++-+++......
T Consensus 1238 FsP~D~LIln---dGv--LWDvR~~-~aIh~FD~ft~~---~~G~F-HP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1238 FSPCDTLILN---DGV--LWDVRIP-EAIHRFDQFTDY---GGGGF-HPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred cCCCcceEee---Cce--eeeeccH-HHHhhhhhheec---ccccc-cCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 9999988774 664 8999988 888888665533 33456 999999998887 9999988776655555
Q ss_pred C
Q 008717 529 D 529 (556)
Q Consensus 529 ~ 529 (556)
+
T Consensus 1303 d 1303 (1516)
T KOG1832|consen 1303 D 1303 (1516)
T ss_pred c
Confidence 5
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.7e-12 Score=120.77 Aligned_cols=206 Identities=15% Similarity=0.154 Sum_probs=153.8
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCE-EEEEeCC--CcEEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQE--EAIRRWD 345 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~d--g~i~iwd 345 (556)
...++|..++.. || .|++|-.+|.+.+|....+.. -.....+..+ ..+..+.-++...+ +++||.. ..++|||
T Consensus 103 l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344556555554 33 577888899999999884321 1122333333 44666666665554 4558887 7899999
Q ss_pred CCCCcEEEEEecC---------CCceEEEEEecC--CCeEEEEeCCCcEEEEECCC--CeEEEeecccCCCeeEEEEccC
Q 008717 346 VNSGECLHVYEKT---------GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 346 ~~~~~~~~~~~~~---------~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
+.+.+.+..-+.- .-.++++.|.+. ...|++++.-+.+++||.+. +.+..+. ....+++++...|+
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPS 258 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCC
Confidence 9887554433221 234567888887 78999999999999999974 3333433 33448999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 413 GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
|+++++|..-+.+..||+++++ ..+.+..+.|+++..+|.++++++++-|..++|+|+.+. +++...
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr-kll~kv 328 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR-KLLHKV 328 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc-hhhhhh
Confidence 9999999999999999999998 456778899999999999999999999999999999986 555543
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=7.8e-13 Score=127.51 Aligned_cols=275 Identities=16% Similarity=0.274 Sum_probs=203.6
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCCeeEEEEEe
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (556)
..+.+++.+..+.+|+- ..-...+....||...|..-.|-| +..-+++++.||.|++=.+...+.....+.+
T Consensus 155 d~l~SgSDD~~vv~WdW------~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 155 DVLASGSDDLQVVVWDW------VSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred ceeeccCccceEEeehh------hccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 33444555555555542 222444555679999999999998 4457999999999999888766666667788
Q ss_pred cCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe---cCC---CceEEEEEecCC-CeEEEEeCCCcEEE
Q 008717 314 SGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYE---KTG---VGLISCGWFLDG-GGIFAGMTDKSICL 385 (556)
Q Consensus 314 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~---~~v~~i~~~~~~-~~l~~~~~dg~i~v 385 (556)
..|.++|..++.-|+. ..|.+++.|+.+.-.|++++.....+. .+. -...+++..|.. ..+++|+.|..+++
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 8999999999999965 578999999999999998876543332 222 256788888854 48999999999999
Q ss_pred EECCC-------CeEEEeecc-----cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---------------eeee
Q 008717 386 WDLDG-------RELESWKGQ-----KTLRISDMAITDDGKRIISICREAAILLLDREANF---------------ERWI 438 (556)
Q Consensus 386 wd~~~-------~~~~~~~~~-----~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---------------~~~~ 438 (556)
||.+. +.+..+..+ ..-.|++++|+.++.-++++..|-.|+++...-+. ..+.
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 99863 212222222 22369999999988888888889999999543221 1245
Q ss_pred ecC--CceEEEE-EcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 439 EEE--EVITSFS-LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 439 ~~~--~~i~~v~-~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+|. ..|..+- |-|...|+++|+.-|.|.||+-.++ +.++.+.+...- +.+.--+|.-.+||+++-|.-|+||.
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~V---VNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHV---VNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccce---EeccCCCCCCchhhccCCccceeeec
Confidence 554 3466665 4678899999999999999998888 888888877664 44444488888999999999999998
Q ss_pred cCCCc
Q 008717 516 LLSES 520 (556)
Q Consensus 516 ~~~~~ 520 (556)
..+.+
T Consensus 465 P~~~e 469 (559)
T KOG1334|consen 465 PLTAE 469 (559)
T ss_pred CCccc
Confidence 75443
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.9e-11 Score=122.39 Aligned_cols=204 Identities=16% Similarity=0.083 Sum_probs=131.2
Q ss_pred eEEecccCCcEEEEEEccCCCEEE---EEeCCC--cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-C
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLA---SSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-E 338 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~la---s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d 338 (556)
.+.+......+.+-+|||||+.++ +...+| .|.+.++.++.. ..+.. ..+......|||||+.|+..+. +
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccceEECCCCCEEEEEECCC
Confidence 344544556677889999998532 333344 466667765432 23333 3444567899999999887653 2
Q ss_pred C----cEEEEECCCC---cEEEEEecCCCceEEEEEecCCCeEEEEe-CCCc--EEEEECC--CCeEEEeecccCCCeeE
Q 008717 339 E----AIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKS--ICLWDLD--GRELESWKGQKTLRISD 406 (556)
Q Consensus 339 g----~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~--i~vwd~~--~~~~~~~~~~~~~~v~~ 406 (556)
| .+.+|++.++ +...............+|+|||+.|+..+ .+|. |+++++. ++....+.... ..+..
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-~~~~~ 331 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-RNSSC 331 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC-CCccc
Confidence 3 3444777653 33333333333446789999999888765 4564 4555554 23333333332 36788
Q ss_pred EEEccCCCEEEEEeCC---CeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEc---CCeEEEEEcCCC
Q 008717 407 MAITDDGKRIISICRE---AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD 473 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d---~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~---dg~I~lwd~~~~ 473 (556)
..|+|||+.|+..+.+ ..|.+||+.+++ ..+......+....|+|||++|+.... ...|++||+.++
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9999999998876543 469999999888 333333446778999999998886543 346889998876
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=3.6e-13 Score=129.03 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=169.4
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
.-..+.++.+|++++.|+.-|.|-.+|..+++....+.. ...|.++.|..+.++|+++ ....++|||-.+.++..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhh
Confidence 346789999999999999999999999999998877764 3458889998877777766 45789999999999988877
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~ 476 (556)
+. .|..+.|-|..-+|++++..|.++.-|+.+++ ..+....+.+..++-+|-+..+-+|..+|+|.+|..... ++
T Consensus 209 ~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-eP 285 (545)
T KOG1272|consen 209 HI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EP 285 (545)
T ss_pred cC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-ch
Confidence 66 79999999999899999999999999999998 455556778888999999999999999999999998887 88
Q ss_pred eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
+..+-.|.+++..| .+ .++|.|++|.+.|..++|||+++-...
T Consensus 286 LvKiLcH~g~V~si--Av-~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 286 LVKILCHRGPVSSI--AV-DRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred HHHHHhcCCCcceE--EE-CCCCcEEeecccccceeEeeecccccc
Confidence 88888999997664 34 889999999999999999999875543
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.1e-11 Score=117.98 Aligned_cols=239 Identities=13% Similarity=0.146 Sum_probs=159.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-----eCC-----CcE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-----GQE-----EAI 341 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~d-----g~i 341 (556)
..++...++|++|+++|.+. +..+.|++..+.. .+.+.. ...+.++.|||-|++|.+= ..+ -.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEec--cceeeeeeecccccccccccccccccCCCCCCCce
Confidence 34477889999999988874 5689999988653 222222 2268999999999988652 112 357
Q ss_pred EEEECCCCcEEEEEe----------------------------------------cCCCceEEEEEecCC--CeEEE---
Q 008717 342 RRWDVNSGECLHVYE----------------------------------------KTGVGLISCGWFLDG--GGIFA--- 376 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~----------------------------------------~~~~~v~~i~~~~~~--~~l~~--- 376 (556)
.+|++.++.....+. -|...|+.+.++|.+ ..+++
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence 899998754322221 133456666666642 12221
Q ss_pred --EeCCCcEEEEECC--------------------------CC------------------------------eEEEeec
Q 008717 377 --GMTDKSICLWDLD--------------------------GR------------------------------ELESWKG 398 (556)
Q Consensus 377 --~~~dg~i~vwd~~--------------------------~~------------------------------~~~~~~~ 398 (556)
.+.-+.|++|... +. .-..+..
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 1222244544332 00 0011111
Q ss_pred ccCCCeeEEEEccCCCEEEE--EeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCC
Q 008717 399 QKTLRISDMAITDDGKRIIS--ICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESD 473 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~--~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~ 473 (556)
...++|.++.|+|+|+-+++ |-.-..+.|||++..- .+.-..++-+++-|+|.|++++.++.+ |.|.+||+.+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 33568999999999986654 4456789999988764 333346677889999999999988765 78999999997
Q ss_pred CcceeEEeCccCceeEEEEeecCCCCcEEEEeeC------CCcEEEEEcCCCceee
Q 008717 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQNVPEILLSESVAA 523 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~------dg~v~iwd~~~~~~~~ 523 (556)
+++.++...... .+-|+|||.+++|++. |+.++||++.+..+-.
T Consensus 347 -K~i~~~~a~~tt-----~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 347 -KLIAKFKAANTT-----VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred -hhccccccCCce-----EEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 888888766543 3344999999998875 7899999998765543
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=4.5e-12 Score=132.92 Aligned_cols=153 Identities=21% Similarity=0.327 Sum_probs=135.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE-EE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VY 355 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~ 355 (556)
-+-++++.-++++|+.-+.|.+|+...++ ....+.+|.+.|.++.|+-||.+++++|.|.++++|++++.+... +.
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccC---CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc
Confidence 34466777799999999999999998442 223688999999999999999999999999999999999988766 66
Q ss_pred ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
-+|...++.++|+|+ .+++++.|.+.++|+.+..++..+..+....+..++..++....++++.|+.+++||+....
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 689999999999987 99999999999999998888887777777789999999999999999999999999987644
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=5.4e-10 Score=111.88 Aligned_cols=182 Identities=12% Similarity=0.151 Sum_probs=127.1
Q ss_pred EEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEE
Q 008717 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGW 367 (556)
Q Consensus 288 as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 367 (556)
++-..++.|.|.|..+. +.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++
T Consensus 10 V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred EEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence 45567899999998865 4556666544444557899999999999999999999999999999997655 4678999
Q ss_pred ecCCCeEEEEe-CCCcEEEEECCCCeEEEeec-c------cCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe---e
Q 008717 368 FLDGGGIFAGM-TDKSICLWDLDGRELESWKG-Q------KTLRISDMAITDDGKRIISIC-REAAILLLDREANF---E 435 (556)
Q Consensus 368 ~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~-~------~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~---~ 435 (556)
++||+++++++ ..+.+.++|.++.++..... . ...++..+..+|....++..- ..+.|.+.|..... .
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999998876 57899999998765443322 1 223678888888888555544 45889999987754 4
Q ss_pred eeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCC
Q 008717 436 RWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESD 473 (556)
Q Consensus 436 ~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~ 473 (556)
.............|+|+++|++++. .++.|-++|..++
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 4555667788899999999987754 4567777777665
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.2e-09 Score=100.03 Aligned_cols=268 Identities=14% Similarity=0.166 Sum_probs=177.3
Q ss_pred ccCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRW 344 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw 344 (556)
.+.+.++-++|+|++++|.++.. +|.|..|.++.. +.+..+........+-..+++++++++++++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46677889999999999988754 578888888743 555555444444444588999999999999987 4789999
Q ss_pred ECCC-CcEEEE--EecCCCc----------eEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEee---cccCCCeeEE
Q 008717 345 DVNS-GECLHV--YEKTGVG----------LISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWK---GQKTLRISDM 407 (556)
Q Consensus 345 d~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~~~~v~~v 407 (556)
-++. |..... ...|.+. +....+.|+++++++.+. --.|.+|++..+.+.... -......+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9865 443222 1223333 788899999999998764 236999999765443221 1333478999
Q ss_pred EEccCCCEEEEEe-CCCeEEEEECCCC--e-eeee---------ecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCC
Q 008717 408 AITDDGKRIISIC-REAAILLLDREAN--F-ERWI---------EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESD 473 (556)
Q Consensus 408 ~~s~~g~~l~~~~-~d~~I~i~d~~~~--~-~~~~---------~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~ 473 (556)
.|+|++++..+.+ -+++|.+|..... + ..+. ....+...+.++|||++|.++.. ...|-+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999877665 5889999998874 3 1111 23456778999999999988764 246888887644
Q ss_pred CcceeEEeCcc-CceeEEEEeecCCCCcEEEEeeCCC-cEEEEEcC--CCceeeeecCCCcccccceeeEe
Q 008717 474 PKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDS-QNVPEILL--SESVAAAASSLDNFVSSYFCLHL 540 (556)
Q Consensus 474 ~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~sgs~dg-~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~ 540 (556)
...+....... ...+--...+ +++|++|+++..++ .|.+|.+. +|.+..... .-.+..-.|+.+
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~--~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNI-NPSGRFLIAANQKSDNITVFERDKETGRLTLLGR--YAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCcccee-CCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc--ccCCCCcEEEEE
Confidence 22333322111 1111122445 88999998888754 68888665 555544332 222333456543
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.1e-10 Score=115.60 Aligned_cols=222 Identities=7% Similarity=0.035 Sum_probs=138.7
Q ss_pred cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE---EEeCCC--cEEEEECCCCcEEEEEecCCCceEEEEEec
Q 008717 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL---TCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (556)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~---s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 369 (556)
.|.+.|....+ ...+......+..-.|||||+.++ +...+| .|.+.++.+|+..... ...+......|+|
T Consensus 166 ~l~~~d~dG~~----~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQN----LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCC----ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence 45556655322 233444556677889999997532 333343 5888898887654333 2344455689999
Q ss_pred CCCeEEEEeC-CC----cEEEEECCC---CeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCe--EEEEECCC--Ce-e
Q 008717 370 DGGGIFAGMT-DK----SICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISIC-REAA--ILLLDREA--NF-E 435 (556)
Q Consensus 370 ~~~~l~~~~~-dg----~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~--I~i~d~~~--~~-~ 435 (556)
||+.|+..+. +| .+..|++.+ +....+...........+|+|||+.|+..+ .+|. |.++++.. +. .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9999887653 22 344467653 333444433322456789999999887765 4564 55555542 22 3
Q ss_pred eeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC---CC
Q 008717 436 RWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE---DS 509 (556)
Q Consensus 436 ~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~---dg 509 (556)
.+......+....|||||++|+..+.+ ..|.+||+.++ +. ..+....... -...| +|||+.|+..+. ..
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~--~~p~w-SpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENK--ESPSW-AIDSLHLVYSAGNSNES 395 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCc--cceEE-CCCCCEEEEEECCCCCc
Confidence 333444567789999999999877643 36999999887 43 3333222222 22445 999998875443 35
Q ss_pred cEEEEEcCCCceeeeec
Q 008717 510 QNVPEILLSESVAAAAS 526 (556)
Q Consensus 510 ~v~iwd~~~~~~~~~~~ 526 (556)
.|++|++.+++......
T Consensus 396 ~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 396 ELYLISLITKKTRKIVI 412 (428)
T ss_pred eEEEEECCCCCEEEeec
Confidence 79999999887655543
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.5e-10 Score=114.86 Aligned_cols=206 Identities=16% Similarity=0.189 Sum_probs=155.2
Q ss_pred ccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeC------C--------------CCCEEEEEeCCCc
Q 008717 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS------P--------------NDHQLLTCGQEEA 340 (556)
Q Consensus 281 sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~--------------~~~~l~s~~~dg~ 340 (556)
.|.+.++|....||.++||+...+...........-.+..++..|. | |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567799999999999999998763322222222233445555552 2 3346777788899
Q ss_pred EEEEECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEE
Q 008717 341 IRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.....+..........+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999887776 67889999999999999999999999999999877665555555558999999999999998
Q ss_pred EeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCC-----CCEEEEEE-cCCeEEEEEcCCC---CcceeEEeCccCce
Q 008717 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKD-----NKYLLVNL-INQEIHLWSIESD---PKLVSRYKGHKRAR 487 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~-----~~~l~~~~-~dg~I~lwd~~~~---~~~~~~~~~~~~~~ 487 (556)
++ +.|++||+.+++ ..+.+|.++|.+++|--+ |.+++++. .+..|.+|-+... +...+.+....-++
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv 239 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPV 239 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCe
Confidence 76 589999999999 888999999999999876 77777654 3555778866542 13445555555444
Q ss_pred e
Q 008717 488 F 488 (556)
Q Consensus 488 ~ 488 (556)
+
T Consensus 240 ~ 240 (541)
T KOG4547|consen 240 T 240 (541)
T ss_pred E
Confidence 3
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.37 E-value=3.2e-10 Score=104.57 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=158.6
Q ss_pred eEEecccCCcEEEEEEccCCCE-EEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----
Q 008717 265 LQILEAHSDEVWFLQFSHDGKY-LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----- 338 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----- 338 (556)
...+......+.+++|||||+. |.+...|-.|.||.+.+... .-+......+..++|+|||++.+.++.-
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCceeeeeecccHHHH
Confidence 3455666778999999999965 55667899999999986522 1223233456788899999887766531
Q ss_pred -------------------------------CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 339 -------------------------------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 339 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
..+.+||---.-.+..+. -.-.+..+.|+|.++++++|+.|+.+++.+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 123444422111122222 235688999999999999999999888744
Q ss_pred CCCC----------------------eE---------------------------------------EEee-----cccC
Q 008717 388 LDGR----------------------EL---------------------------------------ESWK-----GQKT 401 (556)
Q Consensus 388 ~~~~----------------------~~---------------------------------------~~~~-----~~~~ 401 (556)
--+- +. .... ....
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 2110 00 0000 0111
Q ss_pred CCeeEEEEccCCCEEEEEeCC--CeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 402 LRISDMAITDDGKRIISICRE--AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d--~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
-.+.-++|++|..++++-... +.+-+||++..+ ........+|....|+|....|+++.....+++|..... ..+.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~-~~V~ 397 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-RVVG 397 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-eEEe
Confidence 246778999999888876443 569999999988 666667889999999999988998888888999987654 3333
Q ss_pred EEeCccCceeEEEEeecCCCCcEEEEeeCCCcE
Q 008717 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQN 511 (556)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v 511 (556)
.- ..+..+..++| .-+|.+++-.+.|.-.
T Consensus 398 vP---~~GF~i~~l~W-~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 398 VP---KKGFNIQKLQW-LQPGEFIVLCGKDAFC 426 (447)
T ss_pred cC---CCCceeeeEEe-cCCCcEEEEEcCCceE
Confidence 22 11222334555 7889999988888643
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=7.3e-11 Score=109.48 Aligned_cols=272 Identities=13% Similarity=0.156 Sum_probs=192.8
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
...++.++||.+.|+....-|-..-+++.+.|.+++||--.+.++.-+ ........+++++.+.++...|+.|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 456778899999999999999878899999999999997665444211 2223356789999999999999999999999
Q ss_pred EEEECC----CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEE
Q 008717 342 RRWDVN----SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 342 ~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
.-+.+. .....+.+..|...+..+.|+-....+++.+.|..+.-.-.+. ..+-...... ..+++.+.-. +.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--YA 168 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--EE
Confidence 888663 3345666778999999999998889999999988775433332 2221111100 1111111111 44
Q ss_pred EEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEE
Q 008717 417 ISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (556)
..|...|.|..-.+.... .++.+|...+++++|.|..+.|.+|..|..+.+||+.........+.+|...+.. .
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~--l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA--L 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh--h
Confidence 555566666655544333 6677899999999999999999999999999999997665567788899887554 3
Q ss_pred eecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccccceeeEeEeehhh
Q 008717 493 CFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVSSYFCLHLFSFYLY 546 (556)
Q Consensus 493 ~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 546 (556)
++ -+--+.+.++++||.|.+|+....... -.++..+..|.+...++.|
T Consensus 247 ~~-~~~t~~l~S~~edg~i~~w~mn~~r~e-----tpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 247 SY-AQHTRQLISCGEDGGIVVWNMNVKRVE-----TPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred hh-hhhheeeeeccCCCeEEEEeccceeec-----CccccccchhhhhCchHHH
Confidence 33 345567899999999999999865542 2233444555555444444
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.1e-08 Score=102.51 Aligned_cols=201 Identities=15% Similarity=0.252 Sum_probs=138.1
Q ss_pred cCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecC-----------CCCCeEEEEeCCCCCEEEEEeC-
Q 008717 271 HSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSG-----------HRKPVFTVSWSPNDHQLLTCGQ- 337 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~~l~s~~~- 337 (556)
.......++++|++++|+++. .+|.|.++++...+.+........ ......++.|+|+++++++...
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 445667899999999999886 589999999997655444322221 2245789999999999988765
Q ss_pred CCcEEEEECCCCc--EE--EEEe-cCCCceEEEEEecCCCeEEEEe-CCCcEEEEECC--CCeEEEee---cc---c--C
Q 008717 338 EEAIRRWDVNSGE--CL--HVYE-KTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GRELESWK---GQ---K--T 401 (556)
Q Consensus 338 dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~~~~---~~---~--~ 401 (556)
...|.+|+++... .. ..+. ........++|+|+++++++.. .++.|.++++. ++.+.... .. . .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 3479999997654 32 2222 3355678999999999887765 56789999887 44332221 11 1 1
Q ss_pred CCeeEEEEccCCCEEEEEe-CCCeEEEEECCC--Ce---eeeee-cCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 008717 402 LRISDMAITDDGKRIISIC-REAAILLLDREA--NF---ERWIE-EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE 471 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~--~~---~~~~~-~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~ 471 (556)
.....++++|||++|+++. ..++|.+|++.. +. ..... .......++++|+|++|+++.. ++.|.+|++.
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 1578999999999887765 467899999943 33 22222 3455899999999999998874 5689999874
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=6.5e-11 Score=124.41 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=154.4
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce----EEEEEecCCCeEEEEeCCCcEEEEECCCCeE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL----ISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
+.|....+..+...++.++.+..+.+||...+.....+....... .-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 334445566677888999999999999998877666655432211 1223455667889999999999999975444
Q ss_pred EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
......|.+.|.++.++-||.++++.+.|.++++|++.+.+ ....+|...+..++|.|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 44555666799999999999999999999999999999988 477899999999999998 8999999999999976
Q ss_pred CCCCcceeEEeCccCc-eeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 471 ESDPKLVSRYKGHKRA-RFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.. ..+..+.+|... ++. +.. .++...++|++.||.+++|++.+..
T Consensus 246 ~~--~~l~~y~~h~g~~iw~--~~~-~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 246 NG--TQLEVYDEHSGKGIWK--IAV-PIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cc--ceehhhhhhhhcceeE--EEE-cCCceEEEeeccCcchhhhhhhccc
Confidence 54 456688888763 222 333 7788889999999999999987643
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.8e-10 Score=113.51 Aligned_cols=209 Identities=9% Similarity=0.026 Sum_probs=143.7
Q ss_pred CCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEECCCCcEE---------EE-------------------EecC-------
Q 008717 315 GHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECL---------HV-------------------YEKT------- 358 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~---------~~-------------------~~~~------- 358 (556)
.|....+.|..+|||+|+++. ..--.|++||+.+-... .. +.-|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 467788899999999987654 45678999998643210 00 0111
Q ss_pred ----CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 359 ----GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 359 ----~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
...-..++++.-.--|++++....|+-++++.+..........+.++++..++-..+|++|+.+|.|.+||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 0011223333212224555555678888998777666665565689999999999999999999999999999876
Q ss_pred -eeee-------ecC-----CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC-Cc
Q 008717 435 -ERWI-------EEE-----EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QA 500 (556)
Q Consensus 435 -~~~~-------~~~-----~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~ 500 (556)
.... .+. ..|+++.|+.+|-.+++|+.+|.+.|||+++. +++ ..+.|........+.|...+ ++
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl-~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPL-LVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-Cce-eecccCCccceeeecccccCCCc
Confidence 1111 122 34999999999999999999999999999987 443 33556655545556663333 34
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 501 FIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
.|+ ......++|||-.+|+..+...
T Consensus 287 ~v~-S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 287 KVV-SMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred eEE-ecchHHhhhcccccCCceeecc
Confidence 454 4456789999999998876654
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=134.21 Aligned_cols=199 Identities=14% Similarity=0.208 Sum_probs=159.0
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.++.|-..|.++.=+|...+-+||+.||.|++|....+.++....+. + +..|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeeccCCceeeccc
Confidence 34556678889999998899999999999999999877655443432 3 388999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEe---CCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGM---TDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
. .+.....+.|......+.|-. ..+++++ .++.+.+||.-- .....+...|.+.++++++.|..+.+++|+.+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 6 677778888988888888874 5677654 467899999742 11112225566689999999999999999999
Q ss_pred CeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
|.|.+||++..+ ..+.. ++ ...++++|+..|.|+||++... ..++++.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc-chhhcCc
Confidence 999999999876 22222 44 6778999999999999999877 6776664
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=3.9e-10 Score=102.67 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=160.6
Q ss_pred CCcEEEEEEcc---CCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC---CeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 272 SDEVWFLQFSH---DGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 272 ~~~V~~~~~sp---~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
...+..+.|.. +|. .++-+-.+|.|.++..........+..+..-.- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566677764 555 566677889999998764322111122221111 24578899999999999999999976
Q ss_pred ECCCCcE--EEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC-Ce-EEEeecccCCCeeEEEEcc-CCCEEEE
Q 008717 345 DVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RE-LESWKGQKTLRISDMAITD-DGKRIIS 418 (556)
Q Consensus 345 d~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~-~~-~~~~~~~~~~~v~~v~~s~-~g~~l~~ 418 (556)
+...... ++..+.|...++.+.|+. +.+.+++|+.|+.+..||++- ++ +..-...|...|.++.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 6655543 347889999999999986 457889999999999999982 22 2221233444788888876 5779999
Q ss_pred EeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCC-c---ceeEEeCccCceeEEE
Q 008717 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDP-K---LVSRYKGHKRARFVIR 491 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~-~---~~~~~~~~~~~~~~i~ 491 (556)
|+.|..|++||.++.. .......+.|..+.++|.-. .++.++.-+-.+|-++..+. + .....+.|..-.+.
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG-- 306 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYG-- 306 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeec--
Confidence 9999999999999654 33333458899999999432 33344444457777776541 2 23344555553332
Q ss_pred EeecCCCCcEEEEee-CCCcEE-EEEcCCCc
Q 008717 492 SCFGGFEQAFIASGS-EDSQNV-PEILLSES 520 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs-~dg~v~-iwd~~~~~ 520 (556)
.-| .....+|||++ .|..++ +|-..++.
T Consensus 307 ~DW-d~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 307 GDW-DSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ccc-ccccceeeeeeccccceeeeeeeccCC
Confidence 223 22245688865 377755 77555543
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=9.6e-11 Score=117.95 Aligned_cols=231 Identities=19% Similarity=0.295 Sum_probs=172.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC------------eeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
.....|++|+....++|.|+.||.++|..+.+.. .+...+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3467899999999999999999999999886431 1234467889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 340 AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
.|.+|-+-.|.....+. ...+.|.+++|+.||..+.....||.|.+=.++++.+....-.. .....+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg-~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG-QLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch-heccceeecccHHHHH
Confidence 99999987775433332 23567899999999999999999999999888876653222111 1456789999999888
Q ss_pred EEeCCCeEEEEECCCCe-------e------eeeecCCceEEEEEc--------CCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008717 418 SICREAAILLLDREANF-------E------RWIEEEEVITSFSLS--------KDNKYLLVNLINQEIHLWSIESDPKL 476 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~-------~------~~~~~~~~i~~v~~s--------p~~~~l~~~~~dg~I~lwd~~~~~~~ 476 (556)
.+-.+|.+++||.+..- . .+......|..+.|. ||...|+++..+|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 88889999999987643 0 011112235555553 47889999999999999876665344
Q ss_pred eeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
+-.-.+ ...+...| +++|.+|+.++.|
T Consensus 253 vv~dtg----m~~vgakW-nh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVDTG----MKIVGAKW-NHNGAVLAVCGND 279 (1189)
T ss_pred eEEecc----cEeeccee-cCCCcEEEEccCc
Confidence 433333 22354556 8999999988764
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=6.6e-09 Score=100.45 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=122.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCC-cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQ-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
+|.+.|.-..+..+++-++.|..|| .+-|+|..++ ..+.+...-+.|.++..+|+|++++.+.....+.+.|+++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 5788899999999999999999999 8999999864 3355666778899999999999999999989999999999
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeCCC----cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
|.....-+...+-|+.++|+|++++++-+--+| .|+++|+.++++........ .-.+-+|.||+++|..-+
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 987665556678899999999999999877665 69999999988877766554 566779999999876554
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=7.6e-10 Score=109.99 Aligned_cols=189 Identities=16% Similarity=0.263 Sum_probs=147.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCceEEEEEe--------------------cCCCeEEEEeCCCcE
Q 008717 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWF--------------------LDGGGIFAGMTDKSI 383 (556)
Q Consensus 327 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~--------------------~~~~~l~~~~~dg~i 383 (556)
|...++|....||.+++||...++....|... .+..++..|. -|-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999998877776532 3444455552 123457888899999
Q ss_pred EEEECCCCeEEEee--cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 384 CLWDLDGRELESWK--GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 384 ~vwd~~~~~~~~~~--~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
.+|++.++++.... ..|.+.|.++.++.+-..|.+++.|+.+..|+..... .........+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999888775544 4667799999999998999999999999999999988 5556677789999999999999988
Q ss_pred EcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec--CCCCcEEEEe-eCCCcEEEEEcCC
Q 008717 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG--GFEQAFIASG-SEDSQNVPEILLS 518 (556)
Q Consensus 460 ~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~sg-s~dg~v~iwd~~~ 518 (556)
+ +.|++||++++ +.+.+|.||.+++..+.+... ...|.++.++ ..+.-+.+|-+..
T Consensus 163 s--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 58999999999 999999999999777554431 1125666554 4466688886654
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=7.9e-09 Score=116.78 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=158.5
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEEeecCCeeEEEEEecC--------------CCCCeEEEEeCCCCCEEEEEeC-CC
Q 008717 276 WFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--------------HRKPVFTVSWSPNDHQLLTCGQ-EE 339 (556)
Q Consensus 276 ~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~~-dg 339 (556)
..++++++ |..+++-+.++.|++||... .. ...+.+ +-.....+++.++++.|+.+.. ++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 35788874 55666667788999999763 21 122211 1123578899998887766654 56
Q ss_pred cEEEEECCCCcEEEEEecC-----------------CCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecc--
Q 008717 340 AIRRWDVNSGECLHVYEKT-----------------GVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQ-- 399 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 399 (556)
.|+++|..++. +.++.+. -...+.++++| ++..+++.+.++.|++||..++.+..+...
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 79999987765 3333211 11346799999 555666667788999999987665443221
Q ss_pred ------------cCCCeeEEEEccCCCEE-EEEeCCCeEEEEECCCCeeeeeec-----------------------CCc
Q 008717 400 ------------KTLRISDMAITDDGKRI-ISICREAAILLLDREANFERWIEE-----------------------EEV 443 (556)
Q Consensus 400 ------------~~~~v~~v~~s~~g~~l-~~~~~d~~I~i~d~~~~~~~~~~~-----------------------~~~ 443 (556)
.......++++|+|+.+ ++-+.++.|++||+.++....... -..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 01245679999999854 455567899999998765221110 112
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCc------------eeEEEEeecCCCCcEEEEeeCCCcE
Q 008717 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA------------RFVIRSCFGGFEQAFIASGSEDSQN 511 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~sgs~dg~v 511 (556)
...++++++|+.+++.+.++.|++||..++ .. .++.+.... .....+++ +++|+++++-+.+++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIav-d~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATK-RV-TTLAGTGKAGFKDGKALKAQLSEPAGLAL-GENGRLFVADTNNSLI 882 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCC-eE-EEEeccCCcCCCCCcccccccCCceEEEE-eCCCCEEEEECCCCEE
Confidence 468899999998888888999999999876 33 333221100 01123455 8899998888999999
Q ss_pred EEEEcCCCce
Q 008717 512 VPEILLSESV 521 (556)
Q Consensus 512 ~iwd~~~~~~ 521 (556)
++||+.++..
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999998765
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=4.8e-08 Score=95.75 Aligned_cols=250 Identities=8% Similarity=0.004 Sum_probs=154.6
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEeecCCeeEEEEEecCCC-------CCeEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLSGHR-------KPVFTVS 324 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~----------dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~ 324 (556)
.+.+..+..-..+- .+ +||||+.|+.+.. +..|.+||..+.. ....+.-.. .....++
T Consensus 37 ~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~---~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 37 GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL---PIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc---EEeEEccCCCchhhccCccceEE
Confidence 34455555333332 24 9999998887655 7899999999763 344443211 2234789
Q ss_pred eCCCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEE--E--ee
Q 008717 325 WSPNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELE--S--WK 397 (556)
Q Consensus 325 ~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~--~--~~ 397 (556)
++|||++|+.... +..|.+.|+.+++.+..+.... +..-...+.+. ++ +-+.||......+.. ++.. . ++
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeee
Confidence 9999999997763 6899999999999998887533 22222222222 22 223445444433321 1111 0 10
Q ss_pred cccCCCe-eEEEEcc-CCCEEEEEeCCCeEEEEECCCCe------eeeee--------cCCceEEEEEcCCCCEEEEEE-
Q 008717 398 GQKTLRI-SDMAITD-DGKRIISICREAAILLLDREANF------ERWIE--------EEEVITSFSLSKDNKYLLVNL- 460 (556)
Q Consensus 398 ~~~~~~v-~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~------~~~~~--------~~~~i~~v~~sp~~~~l~~~~- 460 (556)
......+ ..-.|.+ +|+++..... |+|.+.|+.... ..... ..+.+.-++++|+++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 0100000 0114455 7777766555 999999975543 11111 123344599999999988853
Q ss_pred ---------cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEee-CCCcEEEEEcCCCceeeee
Q 008717 461 ---------INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 461 ---------~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~ 525 (556)
..+.|.++|..+. +.+..+..... . ..+.+ +||++ +|++.. .++.|.+.|..+++.+...
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG~~-~--~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG-KRLRKIELGHE-I--DSINV-SQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCC-eEEEEEeCCCc-e--eeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1247999999998 77877764332 2 34566 99999 887666 5788999999999887776
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=4.7e-09 Score=101.46 Aligned_cols=217 Identities=16% Similarity=0.234 Sum_probs=155.0
Q ss_pred ccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC--------CCCeEEEE-eCC-CCCEEEEEeCCCcEEEEECCCCc
Q 008717 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH--------RKPVFTVS-WSP-NDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 281 sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h--------~~~v~~l~-~s~-~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
+.||+.++.. ..|.|.+||..+..-.++-..+.-. ..+...+. |++ +|++++..|. |...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4478877764 5678999998865321111111111 01111111 343 6888888886 678888776665
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCC-cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
.++. ++...|.-..+..+++-++.|..|| .+-++|.++.++..+...-. .|.++..+++|++++++.....|.++|
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4433 3555577777777888999999999 89999999999888776654 899999999999999999999999999
Q ss_pred CCCCeeeee--ecCCceEEEEEcCCCCEEEEEEcCC----eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE
Q 008717 430 REANFERWI--EEEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 430 ~~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg----~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
+.++..+.+ ...+-|+.+.|+|+++++|-+--+| .|+++|+.++ +....- .....- ...+| .||+++|.
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vT-T~ta~D--fsPaF-D~d~ryLY 504 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVT-TPTAYD--FSPAF-DPDGRYLY 504 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEec-CCcccc--cCccc-CCCCcEEE
Confidence 999984444 4567799999999999999887665 5999999987 443332 222222 33667 89999887
Q ss_pred EeeC
Q 008717 504 SGSE 507 (556)
Q Consensus 504 sgs~ 507 (556)
--+.
T Consensus 505 fLs~ 508 (668)
T COG4946 505 FLSA 508 (668)
T ss_pred EEec
Confidence 6543
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.6e-09 Score=106.58 Aligned_cols=191 Identities=11% Similarity=0.088 Sum_probs=128.3
Q ss_pred cEEEEEEccCCCE-EEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CC--CcEEEEEC
Q 008717 274 EVWFLQFSHDGKY-LASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QE--EAIRRWDV 346 (556)
Q Consensus 274 ~V~~~~~sp~g~~-las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d--g~i~iwd~ 346 (556)
.+....|||||+. ++..+.+ ..|.++|+.++.. .. +....+......|+|||+.++... .+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~---lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EK---IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EE---EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7789999999985 6654443 4588888876532 22 223455566788999998776543 33 46888898
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-C--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d- 422 (556)
.+++.. .+..+........|+|||+.|+..+.. + .|+++|+.++....+..... ....|+|||+.++..+..
T Consensus 265 ~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCC
Confidence 877643 344333333456899999988877643 2 68888998877755543321 234899999988876653
Q ss_pred --------CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEEcCC
Q 008717 423 --------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIES 472 (556)
Q Consensus 423 --------~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~ 472 (556)
..|.+.|+.++..+............|+|||+.|+..+.++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 36889999888733332233444689999999888766432 366666654
No 264
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.24 E-value=5.4e-11 Score=105.97 Aligned_cols=167 Identities=18% Similarity=0.257 Sum_probs=114.8
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH------HHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHH
Q 008717 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS------VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASF 134 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~------~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~ 134 (556)
++++++++||+.||-..||.++|..+.+|+|+..+.. +-.+++.+|..|+-++|++.+.++...--...+.+.|
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F 103 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFF 103 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHH
Confidence 6789999999999999999999999999999987321 3457899999999999999999985222122334789
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccccccC-hhhHHHhhhccccCCcccccCCCCCCchhHHHHHHHHHHHHhcCCC
Q 008717 135 LILEQKFLELLRRDKVSAALNSLRSEIVPLQIN-MSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKLQKLLPA 213 (556)
Q Consensus 135 ~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~ 213 (556)
-+++|++.||+..+...+|+.++|.++.|.... ++..++|...+..-..+.....+...--....|.+++..+...+-.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 3555554432221111101111110111234567776666554322
Q ss_pred CccC-CcchHHHHHH
Q 008717 214 SVVI-PEKRLEHLVE 227 (556)
Q Consensus 214 ~~~~-p~~rl~~ll~ 227 (556)
.... -..+|..++.
T Consensus 184 ~~~~~~~~~l~~llk 198 (228)
T KOG2659|consen 184 SQEHESEPKLPFLLK 198 (228)
T ss_pred HhcccccchHHHHHH
Confidence 2222 2456666663
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.2e-09 Score=105.96 Aligned_cols=196 Identities=13% Similarity=0.179 Sum_probs=137.2
Q ss_pred cCCcEEEEEEccCCC--EEEE-----EeCCCcEEEEEeecCCeeEEE--EEecCCCCCeEEEEeCCCCCEE-E--EEeCC
Q 008717 271 HSDEVWFLQFSHDGK--YLAS-----SSKDQSAIIWEVKEDGQVSLK--HRLSGHRKPVFTVSWSPNDHQL-L--TCGQE 338 (556)
Q Consensus 271 h~~~V~~~~~sp~g~--~las-----~s~dg~i~iwd~~~~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l-~--s~~~d 338 (556)
|...|..+.+||.+. .+|+ .+.-+.|+||.....+....+ ++|. ...=..+.|++-|.-| + +..-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeec
Confidence 577899999999643 4554 356678999988733222111 2221 2223467888877633 2 22223
Q ss_pred ---------CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEE--eCCCcEEEEECCCCeEEEeecccCCCeeEE
Q 008717 339 ---------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG--MTDKSICLWDLDGRELESWKGQKTLRISDM 407 (556)
Q Consensus 339 ---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 407 (556)
.++++.++....+...+ ...++|.++.|+|+++.|+++ -.-..+.+||++...+..+..+ +-+++
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~ 317 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTA 317 (566)
T ss_pred CCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---Cccce
Confidence 35888888744444333 357899999999999887764 4566899999999887766554 57889
Q ss_pred EEccCCCEEEEEeCC---CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEc------CCeEEEEEcCC
Q 008717 408 AITDDGKRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI------NQEIHLWSIES 472 (556)
Q Consensus 408 ~~s~~g~~l~~~~~d---~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~------dg~I~lwd~~~ 472 (556)
-|+|.|++++.++.+ |.|-|||..+.+.........-+-+.|+|||++++|++. |+.++||+...
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999999999988764 789999999966322223334566899999999999875 67899999865
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=4.3e-09 Score=102.77 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=175.4
Q ss_pred cceeEEecccCCc--EE-EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC--EEEE--
Q 008717 262 SQTLQILEAHSDE--VW-FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLT-- 334 (556)
Q Consensus 262 ~~~~~~l~~h~~~--V~-~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s-- 334 (556)
...+..+.+-..+ .| -+.|+-+.+|+|--. ...++|+++...-.....+.+. ...|....|+|.++ .|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~t 194 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWT 194 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEc
Confidence 4556666666655 66 788999998887653 3479999973211111222222 35688889999643 3443
Q ss_pred ---EeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-----------CCCcEEEEECCCCeEEEeeccc
Q 008717 335 ---CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-----------TDKSICLWDLDGRELESWKGQK 400 (556)
Q Consensus 335 ---~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~ 400 (556)
.+..+.+++|.+..++.+.+-.-....-..+.|.+.|+++++-. ....+++++++.+.+.... ..
T Consensus 195 PEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~ 273 (561)
T COG5354 195 PEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL 273 (561)
T ss_pred cccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc
Confidence 35678899999987766654433333345788999998876421 1246888998876665554 33
Q ss_pred CCCeeEEEEccCCCEEEEEe--CCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCc
Q 008717 401 TLRISDMAITDDGKRIISIC--REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPK 475 (556)
Q Consensus 401 ~~~v~~v~~s~~g~~l~~~~--~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~ 475 (556)
.++|.+.+|.|.++.+++.+ .+..+.++|++.. ..+......=+.+.|+|.++++++++-| |.|.+||......
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 44999999999998766544 6788999999988 5555566666778999999999998766 6799999988755
Q ss_pred ceeEEeCccCceeEEEEeecCCCCcEEEEee------CCCcEEEEEcCCCcee
Q 008717 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGS------EDSQNVPEILLSESVA 522 (556)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs------~dg~v~iwd~~~~~~~ 522 (556)
++..+.+... +.|-|+||+.++.+.. .|..|.|||+......
T Consensus 353 ~~~~~~~~n~-----s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 353 VAGAFNGLNT-----SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EEEEeecCCc-----eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 5557766543 2555599999987764 3889999999876553
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.1e-09 Score=105.81 Aligned_cols=233 Identities=17% Similarity=0.225 Sum_probs=150.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----------CcEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----------EAIR 342 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----------g~i~ 342 (556)
.-+-+.|||-|.||+|--.-| |.+|-=. .+..++.+. |++ |..+.|||+.+||+|=+.. ..++
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~---~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGE---SFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCc---cHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 345789999999999986654 7888533 233334443 544 8899999999999986531 4699
Q ss_pred EEECCCCcEEEEEec--CCCceE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 343 RWDVNSGECLHVYEK--TGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 343 iwd~~~~~~~~~~~~--~~~~v~-~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
|||+.+|...+.|.. ....++ -+.|+.|+++++.-.. ..|.||+...-.+.......-..|....|+|.++.||.=
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 999999998888876 233333 3579999999987766 568888876644443333333467777777776666532
Q ss_pred eCC----------------C---e--------------------------------------EEEEECCCCe--eeeeec
Q 008717 420 CRE----------------A---A--------------------------------------ILLLDREANF--ERWIEE 440 (556)
Q Consensus 420 ~~d----------------~---~--------------------------------------I~i~d~~~~~--~~~~~~ 440 (556)
+.. . + +-|+.++... ......
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 211 0 0 1111111111 111233
Q ss_pred CCceEEEEEcCCCCEEEEEEc---CCeEEEEEcCCC---CcceeEEeCccCceeEEEEeecCCCCcEEEEe---eCCCcE
Q 008717 441 EEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD---PKLVSRYKGHKRARFVIRSCFGGFEQAFIASG---SEDSQN 511 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l~~~~~---dg~I~lwd~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg---s~dg~v 511 (556)
...|..++|-|.|..+++-+. ..++.+|.+.+. .+++..+... . ....||+|.|++++.+ |..|.+
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~----~-~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK----F-ANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc----c-cceEEEcCCCcEEEEEEecccccce
Confidence 456778899999987776543 356889988742 1334444331 1 2245569999998876 457889
Q ss_pred EEEEcCC
Q 008717 512 VPEILLS 518 (556)
Q Consensus 512 ~iwd~~~ 518 (556)
.++|..-
T Consensus 520 ~F~D~~~ 526 (698)
T KOG2314|consen 520 EFYDTDY 526 (698)
T ss_pred EEEecch
Confidence 9999874
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.9e-08 Score=100.43 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=129.7
Q ss_pred CeEEEEeCCCCCE-EEEEeCC---CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-C--CCcEEEEECCCC
Q 008717 319 PVFTVSWSPNDHQ-LLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-T--DKSICLWDLDGR 391 (556)
Q Consensus 319 ~v~~l~~s~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~--dg~i~vwd~~~~ 391 (556)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++... . +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 6654443 469999998887655443 445566788999998876543 2 347888899888
Q ss_pred eEEEeecccCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCee-eeeecCCceEEEEEcCCCCEEEEEEcC-----
Q 008717 392 ELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLIN----- 462 (556)
Q Consensus 392 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~I~i~d~~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~d----- 462 (556)
....+..... ......|+|||+.|+..+.. + .|+++|+.++.. +....... ...|||||++|+..+..
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 7766654432 34456899999988776643 2 688889988773 33322222 25899999998877654
Q ss_pred ----CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC---cEEEEEcCCCce
Q 008717 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QNVPEILLSESV 521 (556)
Q Consensus 463 ----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg---~v~iwd~~~~~~ 521 (556)
..|.+.|+.++ . ...+...... ....| +|||+.|+..+.++ .+.+.++.....
T Consensus 345 ~~~~~~I~v~d~~~g-~-~~~LT~~~~~---~~p~~-SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 345 GKNTFNLYLISTNSD-Y-IRRLTANGVN---QFPRF-SSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred CCCCcEEEEEECCCC-C-eEECCCCCCc---CCeEE-CCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 36888898776 3 3444433211 22455 99999887665432 466777766443
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-09 Score=100.46 Aligned_cols=243 Identities=17% Similarity=0.298 Sum_probs=169.2
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC--eeEEEEEecCCCC------------CeEEEEeCCCC--CEEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHRK------------PVFTVSWSPND--HQLLT 334 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~h~~------------~v~~l~~s~~~--~~l~s 334 (556)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+....+++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999876322 1233445666643 47788887654 46677
Q ss_pred EeCCCcEEEEECCCCc-------------------------------------EE-----EEE-ecCCCceEEEEEecCC
Q 008717 335 CGQEEAIRRWDVNSGE-------------------------------------CL-----HVY-EKTGVGLISCGWFLDG 371 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~v~~i~~~~~~ 371 (556)
.+.|.+|++|.+.... .+ +.+ ..|.-.+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875321 00 011 2456668889998887
Q ss_pred CeEEEEeCCCcEEEEECCC----CeEEEeecccC----CCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCe-----ee-
Q 008717 372 GGIFAGMTDKSICLWDLDG----RELESWKGQKT----LRISDMAITDDG-KRIISICREAAILLLDREANF-----ER- 436 (556)
Q Consensus 372 ~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~----~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~-----~~- 436 (556)
..++++ .|=.|.+|+++- -.+..+.++.. ..|++..|+|.. ..+...+..|.|++-|++... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777665 456799999862 22333333321 157888999964 456667788999999998432 11
Q ss_pred ------------eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC------------cee-EEE
Q 008717 437 ------------WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARF-VIR 491 (556)
Q Consensus 437 ------------~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~------------~~~-~i~ 491 (556)
+.+-...|..+.|+++|+|+++-+ --+++|||++....++.+...|.. .++ -..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 112235688899999999998866 468999999887788888866642 222 233
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
+.| +-|.+.+.+|+..+..-|+-.
T Consensus 343 isf-Sgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISF-SGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEe-cCCcccccccccccceeeecc
Confidence 555 778889999999888888763
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.2e-10 Score=125.99 Aligned_cols=214 Identities=13% Similarity=0.168 Sum_probs=165.5
Q ss_pred EEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCCceEEEE
Q 008717 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK-TGVGLISCG 366 (556)
Q Consensus 288 as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~ 366 (556)
.....++...-|..+.++ ..+..+-..|.++.=+|...+.+||+.||.|++|....++.+..+.. ....|+.+.
T Consensus 2184 ~~~n~~~~~~tq~~~~~~-----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2184 TPSNLPWLGSTQTSRGAS-----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred CcccCCccccceecccce-----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 333344445555544221 12333556788888899999999999999999999988888877763 247889999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe---CCCeEEEEECCCCe---eeeeec
Q 008717 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANF---ERWIEE 440 (556)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~---~d~~I~i~d~~~~~---~~~~~~ 440 (556)
|+.+|+.+..+..||.+.+|....+....+..+.. ...++.|-. ..+++++ .++.+.+||.--.. .....|
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk-~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNK-ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred hcccCCceeeeccCCceeecccCCcceeccccCCc-cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 99999999999999999999998777777666654 667777765 4555543 46789999975443 344789
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+.++++++-|..+.|++|+.+|.|++||++.. ++.++++. . . ...++++|+..|.++||++..-.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~-----------~-~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA-----------L-D-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-----------h-h-hhheeeccCcccceEEEEccccc
Confidence 999999999999999999999999999999987 77777764 1 3 45688999999999999998765
Q ss_pred eee
Q 008717 521 VAA 523 (556)
Q Consensus 521 ~~~ 523 (556)
++.
T Consensus 2402 ll~ 2404 (2439)
T KOG1064|consen 2402 LLH 2404 (2439)
T ss_pred hhh
Confidence 543
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=8.3e-09 Score=96.07 Aligned_cols=233 Identities=12% Similarity=0.208 Sum_probs=163.2
Q ss_pred hccccceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC-CeeEEE
Q 008717 232 VQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLK 310 (556)
Q Consensus 232 ~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~ 310 (556)
......++..+.+..+.+|-........ | .+......+++++.+.++...|+.|-..|++.-+.+... ++....
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~w-p----sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYW-P----SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccC-c----hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 3444556666667677666433221100 0 011224567899999999999999999999988876532 223445
Q ss_pred EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-
Q 008717 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD- 389 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~- 389 (556)
+....|...|..+.|+-...++++++.|..+.---.+.+..+..+.-. ...++..+.-. +.+.|...|.|.+..+.
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~ 184 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQ 184 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEEEee
Confidence 667789999999999999999999999977655545555544332211 11111222211 55667777777766553
Q ss_pred -CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeE
Q 008717 390 -GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (556)
Q Consensus 390 -~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I 465 (556)
.-.+......+.+.+.+++|.+....+.+|..|..|.+||+...+ ....+|...|..+..-+.-+.+.+++.||.|
T Consensus 185 ~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE
Confidence 333344445556699999999999999999999999999998776 6677888999998888888899999999999
Q ss_pred EEEEcCC
Q 008717 466 HLWSIES 472 (556)
Q Consensus 466 ~lwd~~~ 472 (556)
.+||+..
T Consensus 265 ~~w~mn~ 271 (404)
T KOG1409|consen 265 VVWNMNV 271 (404)
T ss_pred EEEeccc
Confidence 9999864
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=7e-08 Score=91.12 Aligned_cols=198 Identities=14% Similarity=0.277 Sum_probs=144.9
Q ss_pred EEEEEEccCCCEEEEEeC-CCcEEEEEeecCCeeEEEEEecCCCCC----------eEEEEeCCCCCEEEEEeCC-CcEE
Q 008717 275 VWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKP----------VFTVSWSPNDHQLLTCGQE-EAIR 342 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v~~l~~s~~~~~l~s~~~d-g~i~ 342 (556)
-+.++++++|++|+++.. .|.|.++.+.+.+.+........|.+. +.+..+.|++++|++++.. -.|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 378999999999998864 588999999876665555445556666 8899999999999998652 3799
Q ss_pred EEECCCCcEEEEEe---cCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCC--CeEEEeecc--------cCCCeeEEE
Q 008717 343 RWDVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG--RELESWKGQ--------KTLRISDMA 408 (556)
Q Consensus 343 iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~--~~~~~~~~~--------~~~~v~~v~ 408 (556)
+|++..|.....-. ........+.|+|++++..+.+ -+++|.+|..+. +++..+... ......++.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 99998776432211 3455678899999999987766 588999999875 444433321 123678899
Q ss_pred EccCCCEEEEEeC-CCeEEEEECCCC--eeeee----ecCCceEEEEEcCCCCEEEEEEcCC-eEEEEEcCC
Q 008717 409 ITDDGKRIISICR-EAAILLLDREAN--FERWI----EEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIES 472 (556)
Q Consensus 409 ~s~~g~~l~~~~~-d~~I~i~d~~~~--~~~~~----~~~~~i~~v~~sp~~~~l~~~~~dg-~I~lwd~~~ 472 (556)
+++||++|.++.. ...|.+|.+... +..+. .+......+.|+|+|++|+++..++ .|.+|.+..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 9999999988654 246778876654 32222 2344578999999999999988764 588887753
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=4.6e-10 Score=113.61 Aligned_cols=244 Identities=16% Similarity=0.202 Sum_probs=167.0
Q ss_pred EEEEEEccCC--CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCc-
Q 008717 275 VWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE- 350 (556)
Q Consensus 275 V~~~~~sp~g--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~- 350 (556)
|-.+.|+|.. .+-++........+|++.....-..-..+.+|..+|+.+.|+|+. ..+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5566677643 233334445566789987554445556778999999999999954 578999999999999998754
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccC-CCEEEEEeCCCeEEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDD-GKRIISICREAAILLL 428 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~I~i~ 428 (556)
.+..+..-......++|+.....+.+.+....|.+||++. .........+...|+.++|..- ...+.+.+.|++|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 4445544455677899998666666667778899999973 3444444445558888888763 2357788999999999
Q ss_pred ECCCCe---eeeeecCCceEEEEEcCCCCEEE-----------EEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEee
Q 008717 429 DREANF---ERWIEEEEVITSFSLSKDNKYLL-----------VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (556)
Q Consensus 429 d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~-----------~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (556)
|..... ........+|..-.+-|-|.-.. .--.++....|++.++.+++++|.||.+.|.- ..|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e--FlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE--FLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH--Hhh
Confidence 987655 44555566676666666432211 11123344556776667899999999986422 222
Q ss_pred c-------CCC--CcEEEEeeCCCcEEEEEcCCCc
Q 008717 495 G-------GFE--QAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 495 ~-------s~~--~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
- ..| .-.|++-|.|..+++|-+.+..
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 1 111 1248999999999999887643
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.5e-10 Score=111.87 Aligned_cols=244 Identities=16% Similarity=0.257 Sum_probs=170.4
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe----eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (556)
-.++.+.||...|..++--.+.+.+++++.|++|++|.+...+. -.+..+++.|..+|..+.|-.+-++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34667889999999998888888899999999999999974321 23667889999999999999888888765 7
Q ss_pred CcEEEEECCCCcEEEEEec--CCCceEEEEEec--CCCeEEEE-eCCCcEEEEECCCCeE-EEee----cccCCCeeEEE
Q 008717 339 EAIRRWDVNSGECLHVYEK--TGVGLISCGWFL--DGGGIFAG-MTDKSICLWDLDGREL-ESWK----GQKTLRISDMA 408 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~--~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~----~~~~~~v~~v~ 408 (556)
|-|.+||.--|+.+..+.. ..+.+..+..-+ +...++.| +...+|+++|.+.... ..+. .....-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999887776654331 122233333334 34444444 6788999999985332 1222 22334689999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE-EEcCCCCcceeEEeCccC
Q 008717 409 ITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL-WSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 409 ~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l-wd~~~~~~~~~~~~~~~~ 485 (556)
..+.|++++++-.+|.|.+.|.++++ ..+.........++ .|..+.++....|.++.+ |..-.+ ....+.+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppe 961 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPE 961 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCc
Confidence 99999999999999999999999987 33444444444343 355667887778899988 987666 44344443333
Q ss_pred ceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 486 ARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 486 ~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+ ..|.-.-|.-+++....+.+.+|.
T Consensus 962 p-----ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 962 P-----AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred c-----hhhhhccCceeEEeccCcEEEEEe
Confidence 3 222233455677777777777774
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=3.4e-08 Score=89.02 Aligned_cols=236 Identities=9% Similarity=-0.002 Sum_probs=153.5
Q ss_pred EEEEcc-----CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCCc
Q 008717 277 FLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 277 ~~~~sp-----~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
.+.|.| ...+||.|+..|...+|...+... .......|...|.-+.=.- ..--+..++.|.++++.++..+.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 355555 345899999999999999986532 2233334444433222111 12346667888899999886554
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--CeEEE-eecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--RELES-WKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
.....-...-.+.++.+++|++++++.+....|..|.++. ..+.. ........-.+..|+.....+|++..||++.|
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred ccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 3222222223478999999999999999999999999864 22222 22233335577889999999999999999999
Q ss_pred EECCCCe-------eeeeecCCceEEEEEcCCCC--EEEEEEcCCeEEEEEcCCCCcceeEEeCcc--------CceeEE
Q 008717 428 LDREANF-------ERWIEEEEVITSFSLSKDNK--YLLVNLINQEIHLWSIESDPKLVSRYKGHK--------RARFVI 490 (556)
Q Consensus 428 ~d~~~~~-------~~~~~~~~~i~~v~~sp~~~--~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~--------~~~~~i 490 (556)
||++... .....|.+.+..+.|++-|. +|+..-.-+.+.+.|+++. ...+.+.... +.++.
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-~~~q~I~i~~d~~~~~~tq~ifg- 307 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-VNHQVIVIPDDVERKHNTQHIFG- 307 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-ceeeEEecCcccccccccccccc-
Confidence 9998754 22335889999999998663 4555444578999999988 4444433222 22322
Q ss_pred EEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 491 RSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+| +.++.-+.+.+++ .+.=|++.+.
T Consensus 308 -t~f-~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 308 -TNF-NNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred -ccc-cCCCcccccccch-hhheeecccc
Confidence 555 5566656555554 3455665543
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=7.2e-09 Score=105.80 Aligned_cols=239 Identities=11% Similarity=0.111 Sum_probs=172.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC------------CEEEEEeCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------------HQLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------------~~l~s~~~dg~ 340 (556)
+.-.++.|+|.| +||.|+. ..|.+-|..+- +.++.+..|...|+.+.|.|-. -.|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336688999988 5777764 47888887654 6778888999999999998721 25677777899
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEec---CC-CeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc-CCCE
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFL---DG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKR 415 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~ 415 (556)
|.+||...+..+..++.+..++..++|-+ +. ..+++-.....|.+|+..+++..-..........|+.++| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999999999999999999999999987 34 4566666678999999987655433333332567799998 4556
Q ss_pred EEEEeCCCeEEEEECCCCe--------eeee-ecCC------------c-------------eEEEEEcCCCCEEEEEEc
Q 008717 416 IISICREAAILLLDREANF--------ERWI-EEEE------------V-------------ITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--------~~~~-~~~~------------~-------------i~~v~~sp~~~~l~~~~~ 461 (556)
+..-+..|.+.+-+.-... ..+. .|.. . ...++|+|.-+.++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 7666777777777653221 1111 1111 0 123578898777777777
Q ss_pred CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 462 dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
...+.++|++-. .++....-..+....+.+.. .|....|+++-.||.+.||-.+.
T Consensus 251 prellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 251 PRELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeec
Confidence 889999999876 77777766666555566665 66777899999999999997654
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.8e-08 Score=99.36 Aligned_cols=240 Identities=14% Similarity=0.189 Sum_probs=139.9
Q ss_pred cEEEEEEccCCCEEEEEeC-----------CCcEEEEEeecCCeeEEEEEecC---CCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 274 EVWFLQFSHDGKYLASSSK-----------DQSAIIWEVKEDGQVSLKHRLSG---HRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~-----------dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
.|.-+.|||+.+||+|-+. ...++|||+.+|. ..+.+.. ....-.-..||.|++++|-...|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~---lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL---LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc---hhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 4888999999999998643 1569999999874 3333333 11222346789999888876664
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEE-----------------------------------------------EecCCC
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCG-----------------------------------------------WFLDGG 372 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~-----------------------------------------------~~~~~~ 372 (556)
.|.||+...-..+..-.-.-..|.... |-.+|.
T Consensus 327 sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 677776543211100000111222333 333444
Q ss_pred eEEEEeC-------CC---cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCe--ee-
Q 008717 373 GIFAGMT-------DK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANF--ER- 436 (556)
Q Consensus 373 ~l~~~~~-------dg---~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---d~~I~i~d~~~~~--~~- 436 (556)
+|+.--. .| .+.|+.++.+.+....-.-...|...+|-|.|+.+++.+. ..++.+|-+.+.. ..
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 4443110 01 2333333333222111112226888999999998776553 3579999888432 11
Q ss_pred -eeecCCceEEEEEcCCCCEEEEEE---cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC-----
Q 008717 437 -WIEEEEVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE----- 507 (556)
Q Consensus 437 -~~~~~~~i~~v~~sp~~~~l~~~~---~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~----- 507 (556)
..-.....+.+.|+|.|++++++. ..|.+.++|+....-.......|... ..+-| .|.|+|+++++.
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a---t~veW-DPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA---TEVEW-DPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccccc---ccceE-CCCCCEEEEeeehhhhc
Confidence 112235578899999999998764 46889999987420111122233332 33445 999999999876
Q ss_pred -CCcEEEEEcCCCce
Q 008717 508 -DSQNVPEILLSESV 521 (556)
Q Consensus 508 -dg~v~iwd~~~~~~ 521 (556)
|.--+||++.+..+
T Consensus 563 ~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLL 577 (698)
T ss_pred cccceEEEEeecHHH
Confidence 45567788776544
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=5.2e-07 Score=86.00 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=144.2
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeC-CCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 277 ~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
+++|.+ ++.++++--..+.|..|+..++. .....+. . ...+++. +++ .++.+... .+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~~~~~~~---~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--VEVIDLP---G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEEESS---S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--EEEEecC---C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 578888 77777777678999999988542 1122222 2 6667777 564 55555554 456669998865544
Q ss_pred Eec-----CCCceEEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE-EEe
Q 008717 355 YEK-----TGVGLISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SIC 420 (556)
Q Consensus 355 ~~~-----~~~~v~~i~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~ 420 (556)
... .....+.+++.|+|+..++.... |.|..++.. +++......- ...+.++|+|+++.|+ +-+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccceEECCcchheeeccc
Confidence 443 34668899999999977776543 568888887 4444443332 3689999999999765 556
Q ss_pred CCCeEEEEECCCCe------eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 421 REAAILLLDREANF------ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 421 ~d~~I~i~d~~~~~------~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
..+.|..|++.... ..+... .+..-.++++.+|++.++....+.|.++|.. + +.+..+...... ...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~--~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPR--PTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSS--EEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCC--EEE
Confidence 77889999986322 222222 2247889999999988887889999999977 5 777777666333 355
Q ss_pred EeecCCCCcEEEEee
Q 008717 492 SCFGGFEQAFIASGS 506 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs 506 (556)
++|..++.+.|+..+
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 888778877665543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=5.7e-08 Score=109.92 Aligned_cols=195 Identities=12% Similarity=0.146 Sum_probs=134.8
Q ss_pred cEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCC-----------------CCCeEEEEeCC-CCCEEEE
Q 008717 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGH-----------------RKPVFTVSWSP-NDHQLLT 334 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~s~-~~~~l~s 334 (556)
....+++.++++.|+.+. ..+.|+++|..++ . +.++.+. -..-..++++| ++..+++
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa 700 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE-T---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA 700 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC-E---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence 357889999888666554 4567898988653 2 2222110 11235789999 5566667
Q ss_pred EeCCCcEEEEECCCCcEEEEEecC---------------CCceEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEeec
Q 008717 335 CGQEEAIRRWDVNSGECLHVYEKT---------------GVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~i~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
.+.++.|++||..++... .+.+. -.....++++|+++.+++ -+.++.|++||++++.......
T Consensus 701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 677889999999877543 22211 123467999999985554 4567899999998654322111
Q ss_pred c---------------------cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeec--------------CC
Q 008717 399 Q---------------------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE--------------EE 442 (556)
Q Consensus 399 ~---------------------~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~--------------~~ 442 (556)
. .......++++++|+.+++-+.++.|++||..++. ....+. -.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 0 01135689999999988888899999999998877 322221 12
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
....++++++|+.+++.+.++.|++||+.++
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 4678999999998888888999999999886
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.2e-10 Score=112.28 Aligned_cols=209 Identities=14% Similarity=0.237 Sum_probs=154.5
Q ss_pred EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCC
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 381 (556)
.+..+.+|...|..++--.+.+.+++++.|++|++|.++. ..|..+++.|..+|.++.|..+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456789999999888777889999999999999999863 34778899999999999999887777654 78
Q ss_pred cEEEEECC-CCeEEEeec-ccCCCeeEEEEccC--CCEEEEE-eCCCeEEEEECCCCe--e--ee---eecCCceEEEEE
Q 008717 382 SICLWDLD-GRELESWKG-QKTLRISDMAITDD--GKRIISI-CREAAILLLDREANF--E--RW---IEEEEVITSFSL 449 (556)
Q Consensus 382 ~i~vwd~~-~~~~~~~~~-~~~~~v~~v~~s~~--g~~l~~~-~~d~~I~i~d~~~~~--~--~~---~~~~~~i~~v~~ 449 (556)
.|.+||.- ++.+.++.. ...+.+..+..-++ ...++++ +...+|+++|.+... . +. .+.+..+.++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 89999973 433322221 12224444444443 3344444 678899999999876 2 22 234566899999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEE-EEcCCCceeee
Q 008717 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVP-EILLSESVAAA 524 (556)
Q Consensus 450 sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~i-wd~~~~~~~~~ 524 (556)
.+.|++++++-.+|+|.+.|.+++ +.+..++.-.-.. +... .|..+.++....|.++-+ |...++.....
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdl--lqla--apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDL--LQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchh--hhhc--CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 999999999999999999999999 8888877655432 2222 467788888888999988 97776655433
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=7.2e-09 Score=104.77 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=159.2
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
.-++++||+..|.-+.|+.+.+.|-|...+|.|.||-+..+.-.... .-....+.|.+++|+.||..|...-.||.|.+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 34679999999999999999999999999999999999865322111 11234567899999999999999999999988
Q ss_pred EECCCCcEE-EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--------EEee---cccCCCeeEEEEc-
Q 008717 344 WDVNSGECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL--------ESWK---GQKTLRISDMAIT- 410 (556)
Q Consensus 344 wd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~---~~~~~~v~~v~~s- 410 (556)
=.++..+.- +.++ ......+.|++|.+.++.+-.+|.+.+||..+.-. .... ......|..+.|.
T Consensus 142 GsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred Eeeccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 877644322 1222 22345788999999999999999999999865211 1111 1111145566664
Q ss_pred -------cCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCC---------eEEEEEcCCC
Q 008717 411 -------DDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ---------EIHLWSIESD 473 (556)
Q Consensus 411 -------~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---------~I~lwd~~~~ 473 (556)
||...++++-.+|.+.+..-.+.. ...+...-.+....|+++|..|++++.+. .|++|..- +
T Consensus 220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G 298 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G 298 (1189)
T ss_pred CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h
Confidence 577789999999999888766655 55555667899999999999999998642 46666533 3
Q ss_pred CcceeEEeCccCceeE
Q 008717 474 PKLVSRYKGHKRARFV 489 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~ 489 (556)
+.+.+++.....++.
T Consensus 299 -~i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 299 -HIVGTLKVPGSCITG 313 (1189)
T ss_pred -hheEEEecCCceeee
Confidence 567777666555444
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.5e-07 Score=95.81 Aligned_cols=232 Identities=13% Similarity=0.138 Sum_probs=143.7
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE-EEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCc
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (556)
++..++.++.++.+..+|..++.. ...... .+.+.+ ... .+..++.++.+|.+..||.++|+.+..+......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKE---LWRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcE---eeeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 466788888999999999987632 222221 122221 111 3557777888999999999999987776543321
Q ss_pred eE-----EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-C---CC---eeEEEEcc--CCCEEEEEeCCCeEEE
Q 008717 362 LI-----SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-T---LR---ISDMAITD--DGKRIISICREAAILL 427 (556)
Q Consensus 362 v~-----~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~---~~---v~~v~~s~--~g~~l~~~~~d~~I~i 427 (556)
+. +... .+..++.+..++.+..+|.++++..-..... . .. ...+.-+| .+..+++++.+|.++.
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11 1112 2347788888899999999776543211100 0 00 00111111 3457888889999999
Q ss_pred EECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 428 ~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
||..+++.............. .++..+++++.+|.++.+|..++ +.+............ ... ..+..|++++.
T Consensus 256 ~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~s-sp~---i~g~~l~~~~~ 328 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLT-APA---VVGGYLVVGDF 328 (377)
T ss_pred EECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCccc-cCE---EECCEEEEEeC
Confidence 999988733322222222222 24667888888999999999988 666554322111111 011 14568889999
Q ss_pred CCcEEEEEcCCCceeeeecCCC
Q 008717 508 DSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 508 dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
+|.|+++|..+++++.......
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCC
Confidence 9999999999999877665433
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=4.1e-09 Score=96.12 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=136.1
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECC-CCcEE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN-SGECL 352 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~-~~~~~ 352 (556)
-.++.|++.|..++++-.+|.+.+-+... ..++..+.++.|.-+++.+.|+. +.+.+.+|+.|+.+..||++ .++.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45788999999999999999998544432 34455568899999999999986 44688999999999999998 44444
Q ss_pred EE-EecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EEEEEeCCCeEEEEE
Q 008717 353 HV-YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLD 429 (556)
Q Consensus 353 ~~-~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i~d 429 (556)
.. .+.|...|.++.-+| .+.++++|+.|-.|++||.++.........-.+.|+.+..+|.-. .++.++.-+-.+|-+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 43 556888899998886 688999999999999999985322223333335899999998543 333344444466666
Q ss_pred CCCCe-------eeeeecCCceEEEEEcCCCCEEEEEEc-CCeEE-EEEcCC
Q 008717 430 REANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIH-LWSIES 472 (556)
Q Consensus 430 ~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~-lwd~~~ 472 (556)
...+. .....|.+-...-.|.....+|++++. |..|+ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 66554 122234444555555444456777652 44433 664443
No 284
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=1.8e-08 Score=93.82 Aligned_cols=232 Identities=15% Similarity=0.236 Sum_probs=153.5
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccC------------CcEEEEEEccCCC--EEEEEeCCCcEEEEEeec
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHS------------DEVWFLQFSHDGK--YLASSSKDQSAIIWEVKE 303 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~------------~~V~~~~~sp~g~--~las~s~dg~i~iwd~~~ 303 (556)
+..+...+.+.++.+...... .-.....++.|. ..|..+.|.++++ .+...+.|.+|++|.+..
T Consensus 40 LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 40 LATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred EeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 345566677777776654321 112222333343 4588899998665 566677999999999874
Q ss_pred CCeeE--------------------------------EEEE-ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 304 DGQVS--------------------------------LKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 304 ~~~~~--------------------------------~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
.+... +.+. -..|+--|.++.++.|+..++++. |=.|.+|++.--.
T Consensus 118 r~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d 196 (433)
T KOG1354|consen 118 RGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIID 196 (433)
T ss_pred cccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccC
Confidence 22110 0011 135777899999999999888754 5689999985322
Q ss_pred -E--EEEEecC-----CCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE-------EEe---------ecccCCCee
Q 008717 351 -C--LHVYEKT-----GVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL-------ESW---------KGQKTLRIS 405 (556)
Q Consensus 351 -~--~~~~~~~-----~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-------~~~---------~~~~~~~v~ 405 (556)
. +.-++.+ ..-|++..|+| ..+.++-.+..|+|++.|++...+ ... +..--..|.
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSIS 276 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSIS 276 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhh
Confidence 2 2222222 34578889999 467788888899999999984211 111 111112689
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecC------------Cc---eEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 406 DMAITDDGKRIISICREAAILLLDREANF---ERWIEEE------------EV---ITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~------------~~---i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
++.|+++|+++++-+. -+|++||+.... ..+.-|. .. -..++|+.++.++++|+..+..++
T Consensus 277 DvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frv 355 (433)
T KOG1354|consen 277 DVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRV 355 (433)
T ss_pred ceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEE
Confidence 9999999999987543 689999995433 3333221 12 245789999999999999999999
Q ss_pred EEcCCC
Q 008717 468 WSIESD 473 (556)
Q Consensus 468 wd~~~~ 473 (556)
++...+
T Consensus 356 f~~~~g 361 (433)
T KOG1354|consen 356 FNLARG 361 (433)
T ss_pred ecCCCC
Confidence 997665
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=1.5e-07 Score=86.27 Aligned_cols=207 Identities=18% Similarity=0.179 Sum_probs=136.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
.++.+.||+.||.- .|..|.|-..+++=. .......+...-.=..++||||+..||.+...|+|+++|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 46778899988876 566777766553211 111122222233457899999999999999999999999864 43444
Q ss_pred EecC-------CCceEEEEEecC------CCeEEEEeCCCcEEEEECCC---C---e--EEEeecccCCCeeEEEEccCC
Q 008717 355 YEKT-------GVGLISCGWFLD------GGGIFAGMTDKSICLWDLDG---R---E--LESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 355 ~~~~-------~~~v~~i~~~~~------~~~l~~~~~dg~i~vwd~~~---~---~--~~~~~~~~~~~v~~v~~s~~g 413 (556)
+... ...|..+.|.+. ...|++-..+|.++-|-+.. + + ...+..+....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 4322 245566666542 22466677778887776531 1 1 122333444589999999998
Q ss_pred CEEEEEeCC-----------CeEEEEECCCCe----------------------e-----ee----eecCCceEEEEEcC
Q 008717 414 KRIISICRE-----------AAILLLDREANF----------------------E-----RW----IEEEEVITSFSLSK 451 (556)
Q Consensus 414 ~~l~~~~~d-----------~~I~i~d~~~~~----------------------~-----~~----~~~~~~i~~v~~sp 451 (556)
+.|++|+.. .-+..|.+-++. . .+ ......|..|.+||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 888776532 125556543221 0 00 11356688999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCc
Q 008717 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (556)
Q Consensus 452 ~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~ 486 (556)
||..||+...+|.|.+|++.+- ++...+.-+.++
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL-~~~~~W~~~eqP 273 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSL-RLQRSWKQDEQP 273 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcc-hhhcccchhhCC
Confidence 9999999999999999999988 777777666554
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=1e-07 Score=105.92 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=159.7
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEE----EeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIW----EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
...+.|.++.+-++...++.+..+|.|.+. +..+ ...+.+ ..-+..|.+++||||+..|+..+.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 4442 222333 33467899999999999999999999888764
Q ss_pred CCCCcEEE------------------------EEec------------------------CCCceEEEEEecCCCeEEEE
Q 008717 346 VNSGECLH------------------------VYEK------------------------TGVGLISCGWFLDGGGIFAG 377 (556)
Q Consensus 346 ~~~~~~~~------------------------~~~~------------------------~~~~v~~i~~~~~~~~l~~~ 377 (556)
-. .+.+. .|.+ ....-..++|-.||.+|++.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 21 11111 1100 12234678899999999987
Q ss_pred eC---C---CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCee---ee--eecCCc
Q 008717 378 MT---D---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFE---RW--IEEEEV 443 (556)
Q Consensus 378 ~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---d~~I~i~d~~~~~~---~~--~~~~~~ 443 (556)
+. . ..+++|+-+ +.+......-.+--.+++|-|.|++|++... ...|.+|....-++ .+ ......
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCce
Confidence 74 2 479999976 4455544444445678999999999988764 45688888666551 11 134567
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc-eeEEeCccCceeEEEEeecCCCC-cEEEEeeCCCcEEEEEc
Q 008717 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL-VSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQNVPEIL 516 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~sgs~dg~v~iwd~ 516 (556)
|..+.|++|+..||+...|. |.+|-..+..=. -+.+.-..... ...+.| +|.. ..|...+.+|.+.++++
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~-~~~~~W-dpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES-VNFVKW-DPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC-CCceEE-CCCCCCEEEEEecCCcEEEEEE
Confidence 99999999999999988555 999998775111 12222111110 111444 6643 44666666677765543
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=101.86 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=127.5
Q ss_pred EEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------e
Q 008717 364 SCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------E 435 (556)
Q Consensus 364 ~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~ 435 (556)
.++|+- .|.. ++.+.+..|-+-|++++.-..+.. .+.|.++.|...++.+..|+.+|.|..+|++... .
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~s--ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQS--KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccccccc--chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 346653 2334 455566788899998877666653 3379999999989999999999999999999762 6
Q ss_pred eeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcc---eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcE
Q 008717 436 RWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQN 511 (556)
Q Consensus 436 ~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v 511 (556)
..+.|...|+++..-. ++++|.+.+.+|.|++||.+.. ++ +.++.||.+.-.-+-+.. .+....|++++.|...
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccc-ccccceEEEccCeeEE
Confidence 6778999999998777 7899999999999999999876 56 999999987544444444 6778889999999999
Q ss_pred EEEEcCCCceeeeecC
Q 008717 512 VPEILLSESVAAAASS 527 (556)
Q Consensus 512 ~iwd~~~~~~~~~~~~ 527 (556)
+||.++.+.+......
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 9999999998766543
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.01 E-value=1.6e-07 Score=104.39 Aligned_cols=246 Identities=13% Similarity=0.141 Sum_probs=158.4
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee----c---------C----------Ce--------eEE---------
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK----E---------D----------GQ--------VSL--------- 309 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~----~---------~----------~~--------~~~--------- 309 (556)
.-...|.+++||||+..||..+.++++.+-+.. . + .+ .+.
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 345689999999999999999989888775421 0 0 00 000
Q ss_pred -----EEEecCCCCCeEEEEeCCCCCEEEEEeC---C---CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe
Q 008717 310 -----KHRLSGHRKPVFTVSWSPNDHQLLTCGQ---E---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (556)
Q Consensus 310 -----~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 378 (556)
...+. ++..-..++|-.||.++|+.+. . ..++||+-+ |....+-+.-.+--.+++|.|.|+.|++.-
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 00111 3335567899999999998875 2 479999954 776555554444456789999999999876
Q ss_pred C---CCcEEEEECCCCeEEEee---cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-----eeeeecCCceEEE
Q 008717 379 T---DKSICLWDLDGRELESWK---GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSF 447 (556)
Q Consensus 379 ~---dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~i~~v 447 (556)
. ...|.+|.-++-.-..+. ......|..+.|++|+..|+....|. |.+|-..+.. .........+..+
T Consensus 276 ~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred EcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 4 346777776553222222 23344799999999999999977655 9999998876 1122234445569
Q ss_pred EEcCCC-CEEEEEEcCCeEEEEEc----CCC-------CcceeEEeCcc---------------------CceeEEEEee
Q 008717 448 SLSKDN-KYLLVNLINQEIHLWSI----ESD-------PKLVSRYKGHK---------------------RARFVIRSCF 494 (556)
Q Consensus 448 ~~sp~~-~~l~~~~~dg~I~lwd~----~~~-------~~~~~~~~~~~---------------------~~~~~i~~~~ 494 (556)
.|+|.. ..|.+.+.+|.+..++. ..+ ...+..+.|.. -+..++.++|
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 999954 44666666566655443 111 00111111110 0112344666
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
++++..+++-..||.|.+|....+
T Consensus 435 -~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 435 -SPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred -eCCCCeEEEEECCCCEEEEEecCC
Confidence 777777999999999999986543
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.2e-09 Score=99.25 Aligned_cols=249 Identities=14% Similarity=0.164 Sum_probs=180.2
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEEECCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSG 349 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~ 349 (556)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.....+..+..|.+.|.+++.+.++..+.|.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776543 5678999999999999987642344667778889999999999999999999777 999999999776
Q ss_pred cEEEEEecCCCceEEEEEe-cCC---CeEEE-EeCCCcEEEEECCC--CeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 350 ECLHVYEKTGVGLISCGWF-LDG---GGIFA-GMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~-~~~---~~l~~-~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
..+.-++-..-+ -.+.|. ..| ..+++ .-.++.+.++|-.. .+.......|..+|.++.+++.+..+++....
T Consensus 87 DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 544333322111 112232 223 12333 33678999999864 35556666777799999999999999999999
Q ss_pred CeEEEEECCC------Ce-----------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC---
Q 008717 423 AAILLLDREA------NF-----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG--- 482 (556)
Q Consensus 423 ~~I~i~d~~~------~~-----------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~--- 482 (556)
|.|.-|.... .. ..+.......+++.|+|+|..+.+-+.|..|++++.+++ ++++.+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccch
Confidence 9999999873 10 112234567889999999999999999999999999988 55544321
Q ss_pred -----------------------------ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 483 -----------------------------HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 483 -----------------------------~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
|. .......+| ...|++|+-|+-=| |++.++.++.++...
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~-~~~~~~~~f-des~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHG-STVGTNAVF-DESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhc-CcccceeEE-cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 11 122345677 77889988887665 788888888776544
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.96 E-value=3e-07 Score=90.17 Aligned_cols=240 Identities=13% Similarity=0.188 Sum_probs=160.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCC---------------CcEEEEEeecCCeeEEEEEecCCCCC--eE-EEEeCCCCCEEE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKD---------------QSAIIWEVKEDGQVSLKHRLSGHRKP--VF-TVSWSPNDHQLL 333 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~d---------------g~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~l~ 333 (556)
...|..+.|||+++||.+-+.. ..+.+||..++ ..+..+..-..+ .+ -+.|+-+++++|
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhh
Confidence 3468899999999999986543 34999999976 455666655555 44 678998888876
Q ss_pred EEeCCCcEEEEECCCCcEE-EEEecC-CCceEEEEEecCCC--eEEE-----EeCCCcEEEEECCCCeEEEeecccCCCe
Q 008717 334 TCGQEEAIRRWDVNSGECL-HVYEKT-GVGLISCGWFLDGG--GIFA-----GMTDKSICLWDLDGRELESWKGQKTLRI 404 (556)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v 404 (556)
=.. ...++|+++ ++... ..+..- ...+....|+|.++ .|+. .+..+.+++|.+..+............-
T Consensus 148 Rvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~ 225 (561)
T COG5354 148 RVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG 225 (561)
T ss_pred hhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence 553 347999997 43321 111111 35678888998543 3443 4567789999986443332222221123
Q ss_pred eEEEEccCCCEEEEEe-----------CCCeEEEEECCCCeeeee-ecCCceEEEEEcCCCCEEEEEE--cCCeEEEEEc
Q 008717 405 SDMAITDDGKRIISIC-----------REAAILLLDREANFERWI-EEEEVITSFSLSKDNKYLLVNL--INQEIHLWSI 470 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~-----------~d~~I~i~d~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~--~dg~I~lwd~ 470 (556)
..+.|.+.|+++++-- ....+++++++....... ...++|..++|.|.++.+++.+ .+..+.++|+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence 4578888888765421 125688999886553333 6689999999999988776554 6788999999
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC---CcEEEEEcCCCceee
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQNVPEILLSESVAA 523 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d---g~v~iwd~~~~~~~~ 523 (556)
+.. +...+ ..+.... ..| +|.+++++.++-| |.+-+||..+.....
T Consensus 306 r~N--l~~~~--Pe~~rNT--~~f-sp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 306 RGN--LRFYF--PEQKRNT--IFF-SPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred ccc--eEEec--CCccccc--ccc-cCcccEEEEecCCccccceEEeccCCceEEE
Confidence 875 33333 2222222 445 9999999987765 689999998877665
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.3e-08 Score=101.12 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=173.2
Q ss_pred CCCcceeEEecccCCcEEEEEEccCC------------CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeC
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHDG------------KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~g------------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 326 (556)
...-+.+++++-|...|+.+.|.|-. -+||++...|.|.+||+... .....+..|..++..++|-
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCWV 118 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheeee
Confidence 34467889999999999999998831 25778888999999999866 3446678899999999997
Q ss_pred C---CC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCC-------CeEE
Q 008717 327 P---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-------RELE 394 (556)
Q Consensus 327 ~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~-------~~~~ 394 (556)
+ +. ..|++-....++.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+.+.-+ ++..
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 6 34 4666667778999999999999888887777788899998 777777777778887776531 2222
Q ss_pred EeecccCC------------C-------------eeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEE
Q 008717 395 SWKGQKTL------------R-------------ISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSF 447 (556)
Q Consensus 395 ~~~~~~~~------------~-------------v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v 447 (556)
.+...+.. . ...++|+|.-+.++.......+.++|++-.. ....-..+.+.-+
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv 278 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV 278 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee
Confidence 22222111 0 1235677876666666777889999998776 2333334445556
Q ss_pred EEcCCC--CEEEEEEcCCeEEEEEcCCCCcc---------------eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 448 SLSKDN--KYLLVNLINQEIHLWSIESDPKL---------------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 448 ~~sp~~--~~l~~~~~dg~I~lwd~~~~~~~---------------~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
.+-|++ ..|++.-.||.+.+|-.+..... +..+..-..-...+..+. ..+...++.--.+|.
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~c-Ps~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASC-PSTPSALAVLYSSGD 357 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecC-CCChhhhhhhhhcch
Confidence 666655 57889999999999976542111 111111111001111111 112344444556888
Q ss_pred EEEEEcCCCce
Q 008717 511 NVPEILLSESV 521 (556)
Q Consensus 511 v~iwd~~~~~~ 521 (556)
+.+|.+.+++.
T Consensus 358 ~~~w~l~~~ri 368 (1062)
T KOG1912|consen 358 STFWQLSNGRI 368 (1062)
T ss_pred hHHHhhhcCCc
Confidence 99999997665
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=2.1e-07 Score=84.06 Aligned_cols=223 Identities=9% Similarity=-0.001 Sum_probs=144.4
Q ss_pred CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-----CCCEEEEEeCCCcEEEEECCCCcEE-EEEecCCCceEEE
Q 008717 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLISC 365 (556)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i 365 (556)
....+-+|+..+..+ ..+... ..+.|-| ...+|+.|+..|...+|...+.+.. .....+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 444677787765421 122222 2344544 4468999999999999999876533 2233333333221
Q ss_pred EEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---e--eeee
Q 008717 366 GWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---E--RWIE 439 (556)
Q Consensus 366 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~--~~~~ 439 (556)
.=.. ....+..++.|.++++.+++.+..........-.+.++++++|++++++.+....|..|.+.... . ....
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 1111 22347778889999999987654433322221248899999999999999999999999988765 1 2222
Q ss_pred cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE----eCccCceeEEEEeecCCCCc--EEEEeeCCCcEEE
Q 008717 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY----KGHKRARFVIRSCFGGFEQA--FIASGSEDSQNVP 513 (556)
Q Consensus 440 ~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~--~l~sgs~dg~v~i 513 (556)
....-.+.+|+.....+|++..||++.|||++....+.... ..|.+. ++.|-+++.|. +|+..-.=+.+.+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa---~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA---FRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc---eEEEEecCCCcceEEEEecCcceEEE
Confidence 34445678999999999999999999999998764443332 235555 44444466553 3444444578899
Q ss_pred EEcCCCceeeee
Q 008717 514 EILLSESVAAAA 525 (556)
Q Consensus 514 wd~~~~~~~~~~ 525 (556)
-|+++..-....
T Consensus 279 ~D~R~~~~~q~I 290 (344)
T KOG4532|consen 279 VDTRNYVNHQVI 290 (344)
T ss_pred EEcccCceeeEE
Confidence 999887654443
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=1e-06 Score=83.41 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=132.1
Q ss_pred CCcEEEEEeecCCeeEEEEEecC--CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 370 (556)
+|+|..||..++. .+....- -.....+. ..+++..+++++.++.+..||..+|+.+..+..... +.... ..+
T Consensus 2 ~g~l~~~d~~tG~---~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGK---ELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTE---EEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEE
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eec
Confidence 6788888887663 2233221 11222211 223577888888999999999999998887775322 11111 235
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEe-eccc---CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeee--eeecCCc-
Q 008717 371 GGGIFAGMTDKSICLWDLDGRELESW-KGQK---TLRISDMAITDDGKRIISICREAAILLLDREANFER--WIEEEEV- 443 (556)
Q Consensus 371 ~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~---~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~--~~~~~~~- 443 (556)
+..+++++.++.++.+|..++++.-. .... ...........++..++++..++.|..+|.++++.. .......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 66778888888999999877655433 2211 111223333334788888888999999999999822 2112211
Q ss_pred ---------eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 444 ---------ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 444 ---------i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
+..-.+..++ .+++++.++.+.-+|+.++ +.+.... ... ..... ..++..|+.++.++.|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg-~~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG-EKLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT-EEEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC-CEEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEE
Confidence 1222223344 6777777775444499998 5443332 222 11223 4577788888899999999
Q ss_pred EcCCCcee
Q 008717 515 ILLSESVA 522 (556)
Q Consensus 515 d~~~~~~~ 522 (556)
|+.+++..
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999875
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=3.7e-08 Score=93.81 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=112.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEECCCC
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSG 349 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~ 349 (556)
.++.+..+|++++||.+..+....++++....+ .++..... -...-+++.|..+......+.. ...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566788899999888888877888775433 23333322 2223344445444555544443 445666666555
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
.+. .+-+|-+.++.++|+||+++|+++..|..|++-... ...+..+.-+|..-|..++..++. .|++++.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 443 444788999999999999999999999999997765 455566666677789999988764 58999999999999
Q ss_pred ECCCCe
Q 008717 429 DREANF 434 (556)
Q Consensus 429 d~~~~~ 434 (556)
|+.+++
T Consensus 221 d~~sgk 226 (390)
T KOG3914|consen 221 DITSGK 226 (390)
T ss_pred ecccCC
Confidence 999987
No 295
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.7e-09 Score=110.16 Aligned_cols=218 Identities=14% Similarity=0.155 Sum_probs=156.9
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC--c
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--A 340 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~ 340 (556)
+..++++.|...-+|++|+-+.++|+.|+..|.|+++++.++. ......+|..+|+.+.-+.||..+++.+.-. .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~---~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS---MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc---ccccccccccccccccccCCcceeeeeccccCch
Confidence 4567788899999999999999999999999999999999873 4466789999999999999998887766543 4
Q ss_pred EEEEECCC-CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecc---cCCCeeEEEEccCCCE
Q 008717 341 IRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQ---KTLRISDMAITDDGKR 415 (556)
Q Consensus 341 i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~---~~~~v~~v~~s~~g~~ 415 (556)
..+|++.+ +...++|.. -.++.|+.....-+.|+......+||+.+... .++... ....-++..|+|+...
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 77999853 455555543 34678876555556666667789999987443 222221 1113478899999887
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
++ .|| .+||.+..+ ..+.... .-..-.|+|+|..++..+. |||+++. ++++....-.. .++.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF-~lLh~VP~Ldq----c~Vt 1308 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTF-KLLHSVPSLDQ----CAVT 1308 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHH-HHHhcCccccc----eEEE
Confidence 65 344 579999876 3332222 2223469999999999874 9999998 77777655444 4456
Q ss_pred ecCCCCcEEEE
Q 008717 494 FGGFEQAFIAS 504 (556)
Q Consensus 494 ~~s~~~~~l~s 504 (556)
| +..|..++.
T Consensus 1309 F-NstG~VmYa 1318 (1516)
T KOG1832|consen 1309 F-NSTGDVMYA 1318 (1516)
T ss_pred e-ccCccchhh
Confidence 6 556666553
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=6.4e-06 Score=78.15 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=137.9
Q ss_pred EEEEEEcc-CCCEEEEEeCCCc-EEEEEeecCCeeEEEEEecCCCCCe--EEEEeCCCCCEEEEEeCC-----CcEEEEE
Q 008717 275 VWFLQFSH-DGKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKPV--FTVSWSPNDHQLLTCGQE-----EAIRRWD 345 (556)
Q Consensus 275 V~~~~~sp-~g~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~d-----g~i~iwd 345 (556)
...++.+| .+..++.+-.-|+ ..+||..++... ..+....+.- -.-.||+||++|++.-.| |.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~---~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL---QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee---eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34577788 5566677766655 578898876432 3333222221 136899999999987543 7899999
Q ss_pred CC-CCcEEEEEecCCCceEEEEEecCCCeEEEEeC------------------CCcEEEEECCCCeEEEe--e--cccCC
Q 008717 346 VN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT------------------DKSICLWDLDGRELESW--K--GQKTL 402 (556)
Q Consensus 346 ~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~--~--~~~~~ 402 (556)
.. +-+.+..+..+.-....+.+.|||+.|+++.. +..+...|..++.+... . ..+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 98 56778888888777788999999988887642 22455556655554333 1 23444
Q ss_pred CeeEEEEccCCCEEEEEeCCCe-------EEEEECCCCe-------eeeeecCCceEEEEEcCCCCEEEEEEc-CCeEEE
Q 008717 403 RISDMAITDDGKRIISICREAA-------ILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHL 467 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~d~~-------I~i~d~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~l 467 (556)
.|..++++++|..++..-..|. |.+++..... .......+.+-+|++++++.++++.+- .+.+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 7999999999876665544332 4455444322 112234678999999999998876664 578999
Q ss_pred EEcCCCCcceeEEeCcc
Q 008717 468 WSIESDPKLVSRYKGHK 484 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~ 484 (556)
||..++ ..+....-..
T Consensus 244 ~d~~tg-~~~~~~~l~D 259 (305)
T PF07433_consen 244 WDAATG-RLLGSVPLPD 259 (305)
T ss_pred EECCCC-CEeeccccCc
Confidence 999998 7666654443
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=8.1e-08 Score=86.32 Aligned_cols=197 Identities=9% Similarity=0.029 Sum_probs=118.3
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecC---------CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKED---------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~---------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
|..+.++-+- .|+++..++.+.......+ ......+.+..|.++-.+-+.+--++-++++..||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555432 4555555555544443211 11122333334444333333344567899999999999999
Q ss_pred CCCCcE-EEEEecCCCceEEEEEecCCCeEEEEeC-----CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EEEE
Q 008717 346 VNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIIS 418 (556)
Q Consensus 346 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~ 418 (556)
.+.-.. .+.+......-.+.+....++.+.++.- -+..+.|+++..............|.+++-+|..+ .+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 764211 1111111111122233334555544332 23466777764332222222222599999999655 6778
Q ss_pred EeCCCeEEEEECCCCe---eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCC
Q 008717 419 ICREAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~ 472 (556)
|+.||.+.+||.+... ..+..|+.+|..+-|+| ++..|+++++||.+..||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8899999999999876 55668999999999999 568899999999999999874
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.81 E-value=1.2e-05 Score=79.17 Aligned_cols=221 Identities=8% Similarity=0.003 Sum_probs=132.0
Q ss_pred CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCC----
Q 008717 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTG---- 359 (556)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---- 359 (556)
++|.+.|..+. +.+..+.....+- .+ +|||++.|+.+.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999999875 4445554433333 24 9999998888766 6789999999999998887432
Q ss_pred ---CceEEEEEecCCCeEEEEe-C-CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC-
Q 008717 360 ---VGLISCGWFLDGGGIFAGM-T-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN- 433 (556)
Q Consensus 360 ---~~v~~i~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~- 433 (556)
.....++++|||+++++.. . +..|.+.|+.++++........ ...-+..+++..+ +-+.||......+.+.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence 2234788999999999877 3 6899999999877655443322 2222222222222 2233444333332221
Q ss_pred e-----eeeeec-CCce-EEEEEcC-CCCEEEEEEcCCeEEEEEcCCCC----cceeEEeCc-------cCceeEEEEee
Q 008717 434 F-----ERWIEE-EEVI-TSFSLSK-DNKYLLVNLINQEIHLWSIESDP----KLVSRYKGH-------KRARFVIRSCF 494 (556)
Q Consensus 434 ~-----~~~~~~-~~~i-~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~----~~~~~~~~~-------~~~~~~i~~~~ 494 (556)
+ ..++.. ..++ ..-.|++ +|+++.+... |.|.+.|+.... ..+..+... ...... +.+
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~ 255 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY 255 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE
Confidence 1 111111 0010 0014456 8888888776 999999964431 222222211 111112 444
Q ss_pred cCCCCcEEEEee----------CCCcEEEEEcCCCceeeeec
Q 008717 495 GGFEQAFIASGS----------EDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 495 ~s~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~ 526 (556)
+++++.++... ..+.|.++|..+++.+....
T Consensus 256 -~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 256 -HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred -cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 88998888743 12579999999988876543
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.78 E-value=3.6e-06 Score=85.72 Aligned_cols=226 Identities=10% Similarity=0.051 Sum_probs=139.6
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
.+..+++++.+|.+..+|..++. .+.............. .++..++.++.++.+..+|..+|+.+........ +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~---~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGK---RLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCc---EeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-e
Confidence 36678888889999999988763 2222222221111222 2567888889999999999999998776653322 2
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCe-----eEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q 008717 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDREANFERW 437 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~ 437 (556)
.+.-.. .+..++.++.+|.++.||.++++..-......... .+.... +..++.+..++.+..+|..+++...
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 211111 35577888889999999998765533222211111 111121 2467788888999999998887222
Q ss_pred ee---cCC---c---eEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 438 IE---EEE---V---ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 438 ~~---~~~---~---i~~v~~sp--~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
.. ... . ...+.-+| .+..+++++.+|.++.||..++ +.+....... . ... ..++..|+.++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~~-~-----~~p-~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASS-Y-----QGP-AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccCC-c-----cCc-eEeCCEEEEEC
Confidence 11 000 0 00011111 3557888888999999999988 6665554211 1 111 23566788888
Q ss_pred CCCcEEEEEcCCCceeeee
Q 008717 507 EDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 507 ~dg~v~iwd~~~~~~~~~~ 525 (556)
.||.|+.+|..+++.+-..
T Consensus 287 ~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCCeEEEEECCCCcEEEcc
Confidence 9999999999988765433
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=7.8e-08 Score=91.67 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=108.4
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCCceEEEEEecCCCeEEEEeCCCc---EEEEECCCCe
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS---ICLWDLDGRE 392 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~---i~vwd~~~~~ 392 (556)
...+..++.++++|.+..+....++++.... .+..+.. ...-+.+.|..+......+..-|. +.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445566777888877777776666664332 2222221 222345555556666665554454 4445444444
Q ss_pred EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
.....+|- +.+++++++||+++++++..|..|++-...... ....+|..-|..+++-++. .|++++.|++|++||
T Consensus 144 ~~~~lGhv-Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEPILGHV-SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhhh-hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 44444444 489999999999999999999999998876654 4556799999999998654 589999999999999
Q ss_pred cCCCCcceeEEe
Q 008717 470 IESDPKLVSRYK 481 (556)
Q Consensus 470 ~~~~~~~~~~~~ 481 (556)
+.++ +.+.++.
T Consensus 222 ~~sg-k~L~t~d 232 (390)
T KOG3914|consen 222 ITSG-KLLDTCD 232 (390)
T ss_pred cccC-Ccccccc
Confidence 9998 6665543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.8e-05 Score=75.43 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=128.9
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEeecc
Q 008717 322 TVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (556)
Q Consensus 322 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 399 (556)
++.|.+ ++.++++-...+.|..|+..+++.. .+.... ...+++. ++ ..++++...+ +.++|..++++..+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 5666666556889999999887643 333222 6777888 55 5566666544 55669988766554433
Q ss_pred -----cCCCeeEEEEccCCCEEEEEeCC--------CeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEE-EEcCCe
Q 008717 400 -----KTLRISDMAITDDGKRIISICRE--------AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLV-NLINQE 464 (556)
Q Consensus 400 -----~~~~v~~v~~s~~g~~l~~~~~d--------~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~-~~~dg~ 464 (556)
.....++++++|+|+..++.... |.|..++.. ++ ......-...+.++|+|+++.|++ -+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 33478999999999977765543 568888888 55 444445566889999999997764 556788
Q ss_pred EEEEEcCCCCcce---eEEe-CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 465 IHLWSIESDPKLV---SRYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 465 I~lwd~~~~~~~~---~~~~-~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
|..+++......+ ..+. ........-.++. ..+|++.++.-..+.|.+++.. |++......+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v-D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV-DSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE-BTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceE-cCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 9999986431211 2221 1111111222445 7799988887789999999988 6665554433
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=6.2e-06 Score=75.94 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=127.4
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCC--cEEEEEe---cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 323 VSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 323 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
++.+.||+.||. -.|..|.|=..++. .++.+.+ .....-..++|+||+..++.+...|+|++||+.+..+..+.
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 456778877765 45567776655432 2233332 22344577999999999999999999999999887665554
Q ss_pred ccc------CCCeeEEEEccC------CCEEEEEeCCCeEEEEECCCC--e-----eeee---ecCCceEEEEEcCCCCE
Q 008717 398 GQK------TLRISDMAITDD------GKRIISICREAAILLLDREAN--F-----ERWI---EEEEVITSFSLSKDNKY 455 (556)
Q Consensus 398 ~~~------~~~v~~v~~s~~------g~~l~~~~~d~~I~i~d~~~~--~-----~~~~---~~~~~i~~v~~sp~~~~ 455 (556)
... ...|..+.|.+- ...|++...+|.++-|-+..+ + ..+. .....|+++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 432 225666767543 224667778888887776432 1 1111 23678999999999999
Q ss_pred EEEEEcC-----------CeEEEEEcCCCCcceeE--------------------------Ee--C-ccCceeEEEEeec
Q 008717 456 LLVNLIN-----------QEIHLWSIESDPKLVSR--------------------------YK--G-HKRARFVIRSCFG 495 (556)
Q Consensus 456 l~~~~~d-----------g~I~lwd~~~~~~~~~~--------------------------~~--~-~~~~~~~i~~~~~ 495 (556)
|++|+.. .-+.-|.+-++ .+... +. + ....++ ++.-
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~-~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl- 237 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSD-SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL- 237 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCC-CCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE-
Confidence 8887632 13666765333 11000 00 1 122333 3444
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
||||++||+...+|.|.+|++.+-.+...
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 99999999999999999999987665443
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=9.4e-08 Score=97.29 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=144.0
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEec-CCCceEEEEEecCC--CeEEEEeCCCcEEEEECC---
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVYEK-TGVGLISCGWFLDG--GGIFAGMTDKSICLWDLD--- 389 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~--~~l~~~~~dg~i~vwd~~--- 389 (556)
.+++..+..+|.|+-++.++.-|. .+-|+.. +.+.+-+.. ..-.|-.+.|+|.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 456778899999999999888764 4456543 333222221 12335567787743 344444455667789984
Q ss_pred CCeEEEeecccCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeE
Q 008717 390 GRELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (556)
Q Consensus 390 ~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I 465 (556)
.+.+.-+..+|...|+++.|+|... .+++++-|-.+..||+++.. ..+..-....+.|.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 4566666677777999999999764 68889999999999999987 2233334556789999866666677778889
Q ss_pred EEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 466 ~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+||.+.+..++..+++|...++. +.|...-...+.+.+.||+|++||....
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~--~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNS--IDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EEEeccCCCcceEEecccceeeeh--HHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999888899999998877665 4443344556889999999999998753
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=5.4e-06 Score=89.68 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=139.9
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC---
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--- 347 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--- 347 (556)
..+.|.++.|.-++..++.+..+|.|.+-|..+.. ......-.+.|.+++||||+..++..+..+++.+.+-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE----LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc----eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 34689999999999999999999999999887542 22233356789999999999999998888887765421
Q ss_pred -C-------------------CcEEEEEecC---------------------CCceEEEEEecCCCeEEEEe----CC-C
Q 008717 348 -S-------------------GECLHVYEKT---------------------GVGLISCGWFLDGGGIFAGM----TD-K 381 (556)
Q Consensus 348 -~-------------------~~~~~~~~~~---------------------~~~v~~i~~~~~~~~l~~~~----~d-g 381 (556)
. |+.-..|.+. .+.=+++.|--||.++++.. .+ .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 0 1111112110 11224589999999999843 23 7
Q ss_pred cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe---CCCeEEEEECCCCee-----eeeecCCceEEEEEcCCC
Q 008717 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANFE-----RWIEEEEVITSFSLSKDN 453 (556)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~---~d~~I~i~d~~~~~~-----~~~~~~~~i~~v~~sp~~ 453 (556)
.|++||-+ +.+........+.-.+++|-|.|..+++.. .|+.|.+|....-.+ .......++..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999987 445444444444567899999999988754 456799998766541 122233449999999999
Q ss_pred CEEEE---EEcCCeEEEEEcCCC
Q 008717 454 KYLLV---NLINQEIHLWSIESD 473 (556)
Q Consensus 454 ~~l~~---~~~dg~I~lwd~~~~ 473 (556)
..|++ ......|++|-+.+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99998 454556999998765
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.5e-07 Score=92.10 Aligned_cols=180 Identities=11% Similarity=0.140 Sum_probs=127.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
.+.+.|++++ +++|+.|+.+|.|++.+.... + .+...|... ..+|.++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3456677775 678999999999999998732 1 233344443 55899999999999999999988887
Q ss_pred EEEEecCCCceEEEEEecC-----CCeEEEEeCCCcEEEEECC--CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 352 LHVYEKTGVGLISCGWFLD-----GGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 352 ~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
..++.- ..++.+++++|+ .+.+++|+..| +.++.-+ ++..........++|.++.|. |+++|.++.+|
T Consensus 106 ~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred ceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence 776653 457899999997 67899999988 7776543 222222344445699999996 66888876665
Q ss_pred EEEEECCCCe-eeeeec-------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 425 ILLLDREANF-ERWIEE-------EEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 425 I~i~d~~~~~-~~~~~~-------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
|++||+.+.+ ...+.. ..-...+.|.++.+ |+.|- ..+|+|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 9999999887 333221 12234677876654 44444 4568888887
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.66 E-value=7.6e-08 Score=62.46 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.3
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd 300 (556)
+++.++++|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-05 Score=75.16 Aligned_cols=243 Identities=15% Similarity=0.110 Sum_probs=140.9
Q ss_pred eeEEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAI 341 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i 341 (556)
..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+++. .....+..| ..+++++|.-|. ++|+.|..+|.|
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3456677888999999999766 7888999999999999976 455666666 889999998865 567778889999
Q ss_pred EEEECCCCcE-EEEEec--CCCceEEEEEe------cCCCeEEEEeCCCcEEEEECCC--C-eEEEeecccCCCeeEEEE
Q 008717 342 RRWDVNSGEC-LHVYEK--TGVGLISCGWF------LDGGGIFAGMTDKSICLWDLDG--R-ELESWKGQKTLRISDMAI 409 (556)
Q Consensus 342 ~iwd~~~~~~-~~~~~~--~~~~v~~i~~~------~~~~~l~~~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~v~~ 409 (556)
.|||++..+- +..+.. ...+|..++.- +.|..++.... .+..|++.. . ..........+...++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999976542 222221 23344444332 23444444443 356676642 1 112222222335667777
Q ss_pred ccCCCEEEEEeCCC-------eEEE-EECCCCe---eeeeec-CCc------eEEEEEcCCCCEEEE-EEcCCeEEEEEc
Q 008717 410 TDDGKRIISICREA-------AILL-LDREANF---ERWIEE-EEV------ITSFSLSKDNKYLLV-NLINQEIHLWSI 470 (556)
Q Consensus 410 s~~g~~l~~~~~d~-------~I~i-~d~~~~~---~~~~~~-~~~------i~~v~~sp~~~~l~~-~~~dg~I~lwd~ 470 (556)
.+..+.++.....+ .|-. -|..++. .....+ .+. -..+.-.++.++++. +...+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 77656555443321 1111 1112221 000011 110 011222345555543 445578999999
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcC
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILL 517 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~ 517 (556)
.+. +.++++.-. .++.. ++...-++. +|+.- .|..++||...
T Consensus 419 ~s~-evvQ~l~~~-epv~D--icp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSF-EVVQTLALS-EPVLD--ICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred chh-heeeecccC-cceee--cceeecCCcchhhhe-ecceEEEEecC
Confidence 998 888888655 45444 444344444 55544 46678887644
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.7e-06 Score=86.34 Aligned_cols=202 Identities=14% Similarity=0.242 Sum_probs=139.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCC-----cEEEEECCC----
Q 008717 279 QFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE-----AIRRWDVNS---- 348 (556)
Q Consensus 279 ~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg-----~i~iwd~~~---- 348 (556)
+|++.+..+|.|+.+|.|.+.+-. .+..+.+..+...+...-|.-++ .+|++.+.|+ .++||+++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 467889999999999998877643 34557777777773333344444 6888877764 489999853
Q ss_pred --CcEE---EEEe----cCCCceEEEEEecCCCeEEEEeCCCcEEEEECC---C-CeEEEeecccCCCeeEEEEccCCCE
Q 008717 349 --GECL---HVYE----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD---G-RELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 349 --~~~~---~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
..++ +.+. ....++.+++.+.+-+.+|+|-.+|.|..+.=+ . +.-.........+|+.+++..+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2334 2222 125678899999999999999999999988532 1 1112222233348999999999987
Q ss_pred EEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe-CccCc
Q 008717 416 IISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRA 486 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~-~~~~~ 486 (556)
++.+.....|.+|.+.... .....+.....|.++++....+++++ +..+.+|+.... .+...|. ||...
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEKKE 258 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCeEE
Confidence 4444555689999998554 33556778899999997665466655 567999998766 6666776 66543
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.61 E-value=1.2e-06 Score=91.76 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=131.7
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
++..++.|+-...+..+|+.+. +..+...-..+.|.-+.. +++++.+|...|+|.+-|.++.+.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccc---eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 4556777777778888898864 222333323334555554 68899999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeC---------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCC-CEEEEEeCCCeEEEEE---
Q 008717 363 ISCGWFLDGGGIFAGMT---------DKSICLWDLDGRELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLD--- 429 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~I~i~d--- 429 (556)
..+.. .|+.+++++. |..|+|||++.-....-...+. ...-+.|.|.- ..+++++..|...+-|
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccc
Confidence 76655 6899999875 5568999998644333222222 23556677753 4688888999999999
Q ss_pred CCCCe--eeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 430 REANF--ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 430 ~~~~~--~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
+.... .... .....+..+.+|++|+.++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44443 3333 3345599999999999999999999999997
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=2.5e-05 Score=73.88 Aligned_cols=189 Identities=16% Similarity=0.175 Sum_probs=118.3
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-ecCC-
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-EKTG- 359 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~- 359 (556)
+++.++++++.++.+..||..++ +....+.. .+.+.... ..++..++.++.++.+..+|..+|+.+... ....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCC---CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 35667777789999999999876 33333332 22211111 224567777778889999999999998874 3221
Q ss_pred --CceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCC----------eeEEEEccCCCEEEEEeCCCeEEE
Q 008717 360 --VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR----------ISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 360 --~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
..........++..++++..++.|..+|++++++.-........ +..-....++ .++.++.++.+.-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 11223333345888999998999999999877664333222211 1122222244 6777777775444
Q ss_pred EECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 428 ~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
+|..+++.........+.. ....++..|++++.++.|..||++++ +.+.
T Consensus 188 ~d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG-~~~W 236 (238)
T PF13360_consen 188 VDLATGEKLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG-KVVW 236 (238)
T ss_dssp EETTTTEEEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTT-EEEE
T ss_pred EECCCCCEEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCC-CEEe
Confidence 4999998334333333333 14567788888889999999999998 5543
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.7e-06 Score=89.51 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=125.6
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
..++|++++ ++.|+.|+-+|.|++.+.. |.. .+...|... .-+|.++++|+.||+|.+-.+-+.......
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456777775 6799999999999999975 333 333334432 458999999999999999888654443333
Q ss_pred cccCCCeeEEEEccC-----CCEEEEEeCCCeEEEEECCCC--e--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 398 GQKTLRISDMAITDD-----GKRIISICREAAILLLDREAN--F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~-----g~~l~~~~~d~~I~i~d~~~~--~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
..+. ++.+++++|+ .+.+++|+..| +.++...-- + .......++|.++.|. |.++|-++.+| |++|
T Consensus 110 df~r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 DFKR-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred ecCC-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 3333 8999999998 46789998888 777764322 1 3455678999999995 88999888666 9999
Q ss_pred EcCCCCcceeEEeCccCc----eeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 469 SIESDPKLVSRYKGHKRA----RFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 469 d~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
|+.+. +.+..+...... .+....+| .++.++++ | ..-+|+|..++
T Consensus 185 d~~~~-~~l~~i~~p~~~~R~e~fpphl~W-~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTR-QRLTNIPPPSQSVRPELFPPHLHW-QDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred ecccc-ceeeccCCCCCCCCcccCCCceEe-cCCCeEEE-e-cCCeEEEEEEe
Confidence 99887 555555433221 12233444 55555444 3 34468888877
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.2e-07 Score=86.74 Aligned_cols=157 Identities=13% Similarity=0.209 Sum_probs=115.8
Q ss_pred EEeCCC--CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC----eEEEe
Q 008717 323 VSWSPN--DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR----ELESW 396 (556)
Q Consensus 323 l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~ 396 (556)
++|+-+ +-+ ++.+.+-.|-+-|+.||-. +.|. ..+.|.+..|...++.++.|..+|.|..+|++.+ .-...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 366543 223 5566777889999988753 3444 5677889999988999999999999999999753 22222
Q ss_pred ecccCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCe-----eeeeecCCc--eEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 397 KGQKTLRISDMAITD-DGKRIISICREAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~--i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
.-.|.+.|+++..-. ++.+|.+.+.+|+|++||.+.-+ ..+.+|-.. -.-+-+.+....+++++.|...+||
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 223444899988877 78899999999999999998654 445555332 2334556777889999999999999
Q ss_pred EcCCCCcceeEEeCc
Q 008717 469 SIESDPKLVSRYKGH 483 (556)
Q Consensus 469 d~~~~~~~~~~~~~~ 483 (556)
.++.+ .++.++.-.
T Consensus 374 sl~~g-hLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSG-HLLCTIPFP 387 (425)
T ss_pred ecccC-ceeeccCCC
Confidence 99998 777776543
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=3.4e-05 Score=73.27 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=127.6
Q ss_pred EEEccCCCEEEEEe-----CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC---------------
Q 008717 278 LQFSHDGKYLASSS-----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--------------- 337 (556)
Q Consensus 278 ~~~sp~g~~las~s-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--------------- 337 (556)
-.||+||++|++.- ..|.|-|||.. ..+..+..+..|--.-..+.+.|||+.|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 56999999999863 45889999998 345777888888777788999999987777531
Q ss_pred ---CCcEEEEECCCCcEEEEEe----cCCCceEEEEEecCCCeEEEEeCCC-------cEEEEECCCCeEEEeec-----
Q 008717 338 ---EEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDK-------SICLWDLDGRELESWKG----- 398 (556)
Q Consensus 338 ---dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~----- 398 (556)
+.++...|..+|+.+.... .|..+|..+++.++|..++..-..| -|-+++-.. .+..+..
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~ 212 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQW 212 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHH
Confidence 2346677788888776633 3677899999999987666654433 234444322 1221111
Q ss_pred -ccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeE
Q 008717 399 -QKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (556)
Q Consensus 399 -~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I 465 (556)
.-.+.+-+|++++++..+++.+ ..+.+.+||..++...-...-..+..++-.+++ ++++.+ .|.+
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccE
Confidence 1123799999999999876655 567899999999985444455567778887777 555544 4543
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=8.9e-07 Score=81.61 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=130.9
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEecC------------CCceEEEEEecCC--CeEEEE
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKT------------GVGLISCGWFLDG--GGIFAG 377 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~------------~~~v~~i~~~~~~--~~l~~~ 377 (556)
...|+++.|...|.|+++|...|.|.++.-.... ....|+.| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754322 12224443 2457788888654 457888
Q ss_pred eCCCcEEEEECCCCeEEEe-------------------------------------------ecccCCCeeEEEEccCCC
Q 008717 378 MTDKSICLWDLDGRELESW-------------------------------------------KGQKTLRISDMAITDDGK 414 (556)
Q Consensus 378 ~~dg~i~vwd~~~~~~~~~-------------------------------------------~~~~~~~v~~v~~s~~g~ 414 (556)
+.|.+|++|.+..+.++.. ...|...++++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999999854311100 012333578889998888
Q ss_pred EEEEEeCCCeEEEEECCCCe--e---eeeec-----CCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCC-----ccee
Q 008717 415 RIISICREAAILLLDREANF--E---RWIEE-----EEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDP-----KLVS 478 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~--~---~~~~~-----~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~-----~~~~ 478 (556)
.++++ .|-.|.+|++.-.. . -..+| ..-|++..|+|.. ..+...+..|.|++-|++... +.+.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77764 67789999987543 1 11222 3458899999954 555566778999999998431 1111
Q ss_pred EE--eC-----ccCceeEEE-EeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 479 RY--KG-----HKRARFVIR-SCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 479 ~~--~~-----~~~~~~~i~-~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.. .+ ....+.+|+ ..| +++|++|++-+. -+|+|||+...
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kF-s~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKF-SDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEE-cCCCcEEEEecc-ceEEEEecccc
Confidence 11 11 111222233 344 999999986554 58999998854
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=3.2e-05 Score=79.19 Aligned_cols=229 Identities=10% Similarity=0.074 Sum_probs=136.9
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE-EEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCc
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (556)
++..++.++.+|.+..+|..++.. ....... +.+.+ ... .+..++.+..++.+..+|..+|+.+-.+......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEV---AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCC---cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 355677788899999999987632 2222211 12211 111 2456777888999999999999988777543111
Q ss_pred e-----EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc-c-C--C---CeeEEEEcc--CCCEEEEEeCCCeEEE
Q 008717 362 L-----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-K-T--L---RISDMAITD--DGKRIISICREAAILL 427 (556)
Q Consensus 362 v-----~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~-~--~---~v~~v~~s~--~g~~l~~~~~d~~I~i 427 (556)
+ .+... .+..++.++.+|.+..+|..+++..-.... . . . ....+..+| .+..+++++.++.+..
T Consensus 193 ~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 193 LTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred ccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 0 01111 234577788889999999876554221110 0 0 0 011111122 2456777788999999
Q ss_pred EECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 428 ~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
+|..+++............+.. ++..+++++.+|.+..+|..++ +.+-........... .... .+..|+.++.
T Consensus 271 ld~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~-sp~v---~~g~l~v~~~ 343 (394)
T PRK11138 271 LDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLT-APVL---YNGYLVVGDS 343 (394)
T ss_pred EECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCccc-CCEE---ECCEEEEEeC
Confidence 9999987333322222222222 4667888888999999999988 554433221111111 0111 3456788999
Q ss_pred CCcEEEEEcCCCceeeeec
Q 008717 508 DSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 508 dg~v~iwd~~~~~~~~~~~ 526 (556)
||.|++.|..+|+.+....
T Consensus 344 ~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCEEEEEECCCCCEEEEEE
Confidence 9999999999998876553
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.51 E-value=5.3e-07 Score=81.17 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=117.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE------------EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC------------LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
++.+.++- ...|+++..++.+......++.+ ...+..+..+-.+-+.+--++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 44455543 33455555565555444433332 233333333222223333567899999999999999
Q ss_pred CCCC-eE-EEeecccCCCeeEEEEccCCCEEEEEe-----CCCeEEEEECCCCe--eeeeecCCceEEEEEcCCC-CEEE
Q 008717 388 LDGR-EL-ESWKGQKTLRISDMAITDDGKRIISIC-----REAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLL 457 (556)
Q Consensus 388 ~~~~-~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~-----~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~-~~l~ 457 (556)
.+.- .+ .+....+. .-.+.++...++.+.++. .-+..+.|+++..+ .........|++++-+|.. ..++
T Consensus 118 ~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8641 11 11111111 122233334455444432 22456677776655 2222223349999999965 5567
Q ss_pred EEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+|+.||.+-+||.++...++..+..|...++- +.|-..++..|+++++||.+..||-.+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~e--V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWE--VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhh--eeccCCCchheeEecCCCcEEEEcCCC
Confidence 78889999999999886677888999998766 556334678899999999999999775
No 317
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.49 E-value=1.8e-07 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHhhhc
Q 008717 64 SEFIKIITRALYSLGYDKSGALLEEES 90 (556)
Q Consensus 64 ~e~~~lI~q~L~e~G~~~sa~~L~~Es 90 (556)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=5.9e-07 Score=58.19 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=35.9
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
+++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46688999999999999999999999999999999997
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.1e-05 Score=77.24 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=127.8
Q ss_pred EEEEecCCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEE
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLW 386 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vw 386 (556)
....+.+|...|..++|||..+ ++..++.+..|+|.|+.+..++..+..+ ..+++++|.-| .++|+.|..+|.|.+|
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3445677888999999999776 7888899999999999999999999877 68999999975 4567778899999999
Q ss_pred ECCCC--eEEEeec-ccCCCeeEEEE------ccCCCEEEEEeCCCeEEEEECCCCe-----eeeeecCCceEEEEEcCC
Q 008717 387 DLDGR--ELESWKG-QKTLRISDMAI------TDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKD 452 (556)
Q Consensus 387 d~~~~--~~~~~~~-~~~~~v~~v~~------s~~g~~l~~~~~d~~I~i~d~~~~~-----~~~~~~~~~i~~v~~sp~ 452 (556)
|++.. .+..+.. ....+|..++. .+.|..++....+ +..|...... ..-.+..+...++..++-
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 99742 2222111 11113433332 3334445544433 4555554332 122334556667777776
Q ss_pred CCEEEEEEcCC-------eEEE-EEcCCCCcceeEE-eCc----cCceeEEEEeecCCCCcEEE-EeeCCCcEEEEEcCC
Q 008717 453 NKYLLVNLINQ-------EIHL-WSIESDPKLVSRY-KGH----KRARFVIRSCFGGFEQAFIA-SGSEDSQNVPEILLS 518 (556)
Q Consensus 453 ~~~l~~~~~dg-------~I~l-wd~~~~~~~~~~~-~~~----~~~~~~i~~~~~s~~~~~l~-sgs~dg~v~iwd~~~ 518 (556)
.++++.....+ .|-. -|-.++ ..+..- .++ ......-...+-.++.++|+ .|.+.+.+.+||..+
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66666554321 0111 111222 222111 111 11111111223245666655 455667899999999
Q ss_pred Cceeeeec
Q 008717 519 ESVAAAAS 526 (556)
Q Consensus 519 ~~~~~~~~ 526 (556)
.+++....
T Consensus 421 ~evvQ~l~ 428 (463)
T KOG1645|consen 421 FEVVQTLA 428 (463)
T ss_pred hheeeecc
Confidence 98876553
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=4.9e-05 Score=82.55 Aligned_cols=199 Identities=12% Similarity=0.089 Sum_probs=133.3
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-----C
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-----G 390 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-----~ 390 (556)
.++.|.++.|..+++.++.+..+|.|.+-|..+... .....-...|.+++|+||+..++..+..+++.+.+-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 346899999999999999999999999998877643 3333446789999999999999999888887764321 1
Q ss_pred CeE-------------------EEeecc--------------------cCCCeeEEEEccCCCEEEEEe----CC-CeEE
Q 008717 391 REL-------------------ESWKGQ--------------------KTLRISDMAITDDGKRIISIC----RE-AAIL 426 (556)
Q Consensus 391 ~~~-------------------~~~~~~--------------------~~~~v~~v~~s~~g~~l~~~~----~d-~~I~ 426 (556)
+.+ ..+.+. ....-+++.|--||+++++.. .+ ..|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111 011100 001234589999999998732 23 7899
Q ss_pred EEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEE---cCCeEEEEEcCCCCcceeEEe--CccCceeEEEEeecCCCC
Q 008717 427 LLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRYK--GHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 427 i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~---~dg~I~lwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~ 499 (556)
+||.. +. .......+.-.+++|-|.|..+++-. +|+.|.+|.- +| -.-..|. -..+...+..++| +.++
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NG-L~hg~f~l~~p~de~~ve~L~W-ns~s 301 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NG-LRHGEFVLPFPLDEKEVEELAW-NSNS 301 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CC-ccccccccCCcccccchheeee-cCCC
Confidence 99988 43 33333445567899999999998764 4567989884 33 2222221 1112221344667 7788
Q ss_pred cEEEE---eeCCCcEEEEEcCCC
Q 008717 500 AFIAS---GSEDSQNVPEILLSE 519 (556)
Q Consensus 500 ~~l~s---gs~dg~v~iwd~~~~ 519 (556)
..||+ ..+...|++|-+.+-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 88887 455556999987664
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.0005 Score=69.84 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=84.4
Q ss_pred ceEEEEEec-CCCeEEEE----eCCCc----EEEEECCCCeEEE---eecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 361 GLISCGWFL-DGGGIFAG----MTDKS----ICLWDLDGRELES---WKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 361 ~v~~i~~~~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~---~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
...++.|+- +...+.+. +.+|. -++|++..++++. ..-.....|.+++++|+...++.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345677776 44555543 33443 4567765443322 222333489999999999999999999999999
Q ss_pred ECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 429 d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
|...+........-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998887555566677899999999999999999999999998644
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.40 E-value=1.6e-05 Score=80.83 Aligned_cols=194 Identities=18% Similarity=0.145 Sum_probs=131.5
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEe---CC-CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSS---KD-QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ- 337 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~- 337 (556)
...+.+..-...+..-+|+|++..++..+ .. ..+.++++.++... .+..+.++. ....|+|||++|+.+..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~---~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNN---GAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCcc---CCccCCCCCCEEEEEECC
Confidence 34455555666788889999999877653 22 46899999876443 333444444 35689999998877654
Q ss_pred CC--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-C--cEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 338 EE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 338 dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
|| .|.++|+.++... .+....+.-+.-.|+|||+.++..+.. | .|.++|.+++....+..... .-..-.|+||
T Consensus 259 dg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~~p~~Spd 336 (425)
T COG0823 259 DGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNSNPVWSPD 336 (425)
T ss_pred CCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCcCccCCCC
Confidence 55 4777788766633 344444434466899999998887653 3 58888888877655554443 2237889999
Q ss_pred CCEEEEEeCC-Ce--EEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcC
Q 008717 413 GKRIISICRE-AA--ILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 413 g~~l~~~~~d-~~--I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~d 462 (556)
|++++..+.. |. |.++|+.++. .+..........-+|.++|+.+...+..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 9998877643 43 7777776666 5555556666677889999887765543
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=5.3e-05 Score=79.35 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=124.9
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCC-CeEEEEeCCC-----cEEEEECCC---Ce--
Q 008717 324 SWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDK-----SICLWDLDG---RE-- 392 (556)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg-----~i~vwd~~~---~~-- 392 (556)
+|++.+..++.|+.+|.|.+.+- .-+.++.++.+...+...-|.-++ +++++.+.|+ .+++||++. +.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788899999999999988873 334457777776663333444444 5777766654 489999952 11
Q ss_pred -EE---Eeec----ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEE
Q 008717 393 -LE---SWKG----QKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLV 458 (556)
Q Consensus 393 -~~---~~~~----~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~ 458 (556)
.. .... ....++.+++++.+-+.+++|-.+|.|..+.-.--+ ........+||.+++..+++-++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 11 1111 123478999999999999999999999998633211 233345789999999999987444
Q ss_pred EEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC-CcEEEEeeCCCcEEEEEcCCCcee
Q 008717 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 459 ~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
...-..|.+|.+.........+..|..+..+ +.+ ++. +.+|+++ +..|++|+.....+-
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC--ss~-~~~t~qfIca~--~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNC--SSF-SDGTYQFICAG--SEFLYFYDSDGRGPC 248 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCcccee--eec-CCCCccEEEec--CceEEEEcCCCccee
Confidence 4446679999998552123445555555333 444 333 3344443 346888887755543
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=7.9e-06 Score=85.74 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=132.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEE
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 407 (556)
++..++.|+....+..+|+++.+..+......+.+.-+. .+++.+.+|...|+|.+-|.++.+.......|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 445677777777888999999888777766555555444 368899999999999999999877777777777677765
Q ss_pred EEccCCCEEEEEeC---------CCeEEEEECCCCe-eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCc-
Q 008717 408 AITDDGKRIISICR---------EAAILLLDREANF-ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPK- 475 (556)
Q Consensus 408 ~~s~~g~~l~~~~~---------d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~- 475 (556)
.. .|+.|++++. |..|+|||++..+ ..-+.......-+.|.|. ...+++++..|...+-|..+...
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 54 6888988875 5569999999877 322222223345677885 35688888899999999433212
Q ss_pred ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
....+.-+.........++ +++++.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDi-Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDI-SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEe-cCCCceEEEecccCcEeeec
Confidence 2344443433333444666 89999999999999999997
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.8e-06 Score=83.46 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=143.4
Q ss_pred CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC--C-cEEEEEecCCCceEEEEEecCCCeEEEEeC-CCcEEEEECCC
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--G-ECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG 390 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~ 390 (556)
-|...|+.+... -.+++.+++.||.++.|.-.. | +.+..+..|...+.+++.+.++..+.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777776554 467999999999999998643 1 344556677888899999999999999777 99999999976
Q ss_pred CeEEEeecccCC-CeeEEEEccCC--CEEE-EEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcC
Q 008717 391 RELESWKGQKTL-RISDMAITDDG--KRII-SICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 391 ~~~~~~~~~~~~-~v~~v~~s~~g--~~l~-~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~d 462 (556)
-..........- ...+...++.. ..++ +.-.++.|.++|-.... ....-|..+|..+.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 433222211110 11111122211 1233 33467889999987654 3344588999999999999999999999
Q ss_pred CeEEEEEcCCCC-----cceeEEeCcc-------CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 463 QEIHLWSIESDP-----KLVSRYKGHK-------RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 463 g~I~lwd~~~~~-----~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
|.|.-|...... +....++... .........| +|+|..+.+-+.|..|+++++.+|+++....
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEE-ccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999999876310 1111111110 1111233566 9999999999999999999999999865443
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.37 E-value=0.0001 Score=75.50 Aligned_cols=219 Identities=14% Similarity=0.147 Sum_probs=130.5
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeE-EEEeCC--CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV 360 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 360 (556)
+..++.++.++.+..+|..++.. ..........+. ...-+| .+..++.++.+|.+..+|..+|+.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAV---KWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCE---eeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 34566677888999999987632 222221110000 000112 234577778889999999999987655432110
Q ss_pred -------ceEEEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q 008717 361 -------GLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (556)
Q Consensus 361 -------~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~ 431 (556)
....+.-+| .+..+++++.+|.+..+|..+++..-.... . ....+. ..+..++.++.++.+..+|..
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-G-SVNDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-C-CccCcE--EECCEEEEEcCCCeEEEEECC
Confidence 001111122 355777788899999999987655322221 1 122222 245678888899999999999
Q ss_pred CCeeeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 432 ANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 432 ~~~~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
+++...... .....+..+ .+.++++++.+|.|++.|..++ +.+.+.+.....+.. .... .+..|+.++.|
T Consensus 313 tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s-~P~~---~~~~l~v~t~~ 385 (394)
T PRK11138 313 GGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLS-EPVV---ADDKLLIQARD 385 (394)
T ss_pred CCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccee-CCEE---ECCEEEEEeCC
Confidence 887332211 111222222 2567888999999999999998 777777544333222 1112 23467888999
Q ss_pred CcEEEEEc
Q 008717 509 SQNVPEIL 516 (556)
Q Consensus 509 g~v~iwd~ 516 (556)
|.|+.+++
T Consensus 386 G~l~~~~~ 393 (394)
T PRK11138 386 GTVYAITR 393 (394)
T ss_pred ceEEEEeC
Confidence 99998764
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.3e-07 Score=95.24 Aligned_cols=197 Identities=18% Similarity=0.202 Sum_probs=130.8
Q ss_pred CcEEEEEEccCC--CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeC----CCcEEEEE
Q 008717 273 DEVWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQ----EEAIRRWD 345 (556)
Q Consensus 273 ~~V~~~~~sp~g--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~----dg~i~iwd 345 (556)
..+.|++++-+. ..++.|..+|.|.+-.+..... .......+|..++++++|++ |.++||+|-. |..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 346677766643 4688899999999988764321 22344567888999999998 5566666632 46799999
Q ss_pred CCCC--cEE--EEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc-CCCEEEEE
Q 008717 346 VNSG--ECL--HVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISI 419 (556)
Q Consensus 346 ~~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~ 419 (556)
+.++ .+. ..|.. ......+++|..+.+.+.+|.....+.++|++........... ..+..+.++| .+.++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecc
Confidence 9876 221 12222 3344568899988889999999889999999843322222111 1577788888 66777665
Q ss_pred eCCCeEEEEE-CCCCe--eeeeec-----CCceEEEEEcCCCC-EEEEEEc-CCeEEEEEcCC
Q 008717 420 CREAAILLLD-REANF--ERWIEE-----EEVITSFSLSKDNK-YLLVNLI-NQEIHLWSIES 472 (556)
Q Consensus 420 ~~d~~I~i~d-~~~~~--~~~~~~-----~~~i~~v~~sp~~~-~l~~~~~-dg~I~lwd~~~ 472 (556)
.||.|.+|| .+.-+ ...+.+ ...+..++|+|... .+++... .++|+++|+..
T Consensus 215 -~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 -SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred -ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 499999999 43333 122222 23489999999542 4555554 46899999853
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=0.00087 Score=61.01 Aligned_cols=84 Identities=10% Similarity=0.013 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
-|++++.|...|.+++.+++++.+.- .+..-..-=......+++..|..|+.|++.+..|.++..++.+.+...+..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w---~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIW---NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhee---eeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 46788999999999999999875432 222211111223456789999999999999999999888877765443333
Q ss_pred EEEEEec
Q 008717 363 ISCGWFL 369 (556)
Q Consensus 363 ~~i~~~~ 369 (556)
.+-+..|
T Consensus 139 ~sP~i~~ 145 (354)
T KOG4649|consen 139 VSPVIAP 145 (354)
T ss_pred ccceecC
Confidence 3333333
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=8.7e-05 Score=77.02 Aligned_cols=217 Identities=11% Similarity=0.051 Sum_probs=129.2
Q ss_pred EEccCCCEEEE-EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC----CcEEEEECCCCcEEE
Q 008717 279 QFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNSGECLH 353 (556)
Q Consensus 279 ~~sp~g~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 353 (556)
-++|||+.+.. .-..+.+.+.|..+. +...++.-. +....+.++|+|+++++++.+ .++...+..+...+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccc---eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 35567765533 233456677777643 333333222 244667899999999888743 233333333222222
Q ss_pred EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-----CeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEE
Q 008717 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i 427 (556)
.+.... + -.+.++|++...+ ++.|.+.|.++ ..+........ ....+.++|||+++++++ .+.+|.|
T Consensus 275 vfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 275 VFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred EEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEE
Confidence 222111 0 1234577776663 57899999987 34443333332 789999999999877665 4889999
Q ss_pred EECCCCee-------------eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC---------CcceeEEeCccC
Q 008717 428 LDREANFE-------------RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---------PKLVSRYKGHKR 485 (556)
Q Consensus 428 ~d~~~~~~-------------~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~---------~~~~~~~~~~~~ 485 (556)
+|+.+.+. ............+|+++|....+-.-|..|..||+... ...+.++.-|-+
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 99987541 11112333456789999987778888999999998761 134555554444
Q ss_pred ceeEEE--EeecCCCCcEEEEee
Q 008717 486 ARFVIR--SCFGGFEQAFIASGS 506 (556)
Q Consensus 486 ~~~~i~--~~~~s~~~~~l~sgs 506 (556)
+..... .-.-.|||++|++..
T Consensus 428 pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 428 PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cceeeecCCCcCCCCCCEEEEcc
Confidence 322211 011167888888764
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.30 E-value=0.0011 Score=63.95 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=142.4
Q ss_pred EEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecC-CCC----CeEEEEeCCCCCEEEEEeC--CC
Q 008717 277 FLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSG-HRK----PVFTVSWSPNDHQLLTCGQ--EE 339 (556)
Q Consensus 277 ~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~-h~~----~v~~l~~s~~~~~l~s~~~--dg 339 (556)
.+..||||+.+++++ ..-.|.+||..+-..... ..+.. |.. ......++.|+++++.... .-
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-EecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 366899999888753 234689999886422111 12222 111 2234678889998887654 45
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECC--CCeEEE---eec-ccCCCeeEEEEccC
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLD--GRELES---WKG-QKTLRISDMAITDD 412 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~--~~~~~~---~~~-~~~~~v~~v~~s~~ 412 (556)
.|.|.|+..++.+..+.... + ..+ .| ....|.+-+.||.+....+. ++.... .+. .....+..-++...
T Consensus 119 SVtVVDl~~~kvv~ei~~PG-C-~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG-C-WLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS-E-EEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeecCCC-E-EEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 79999999999888776433 1 122 23 23568888899999888885 332211 111 11112234455566
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeee--------------cCCceEEEEEcCCCCEEEEEEc---CC-------eEEEE
Q 008717 413 GKRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKYLLVNLI---NQ-------EIHLW 468 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~~~~~~--------------~~~~i~~v~~sp~~~~l~~~~~---dg-------~I~lw 468 (556)
+..++..+.+|.|+-.|+......+.. ..+...-+++++..+.|++--. ++ .|.++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 667777899999999999877621111 0122345788876665555322 11 48888
Q ss_pred EcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe-eCCCcEEEEEcCCCceeeeecCC
Q 008717 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
|+.++ +.+.++.... .+.+|.+.- .+..+|++. ..++.+.+||..+++++......
T Consensus 275 D~~t~-krv~Ri~l~~-~~~Si~Vsq--d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 275 DLKTH-KRVARIPLEH-PIDSIAVSQ--DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp ETTTT-EEEEEEEEEE-EESEEEEES--SSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred ECCCC-eEEEEEeCCC-ccceEEEcc--CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 99998 8888886422 233454433 233466554 46899999999999998776543
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.28 E-value=0.00021 Score=74.25 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=117.1
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCcEEEEEecC-CCceEEEE-------------------EecCCCeEEEE-eCCCcEEE
Q 008717 328 NDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT-GVGLISCG-------------------WFLDGGGIFAG-MTDKSICL 385 (556)
Q Consensus 328 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~-------------------~~~~~~~l~~~-~~dg~i~v 385 (556)
||++|+.-.. +..|-..+++..++-+.++-. ...+..+. +.|||+.+... -..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6677777654 455666666655544433311 11122222 23355444322 23345667
Q ss_pred EECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe----------------------------------------CCCeE
Q 008717 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISIC----------------------------------------REAAI 425 (556)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~----------------------------------------~d~~I 425 (556)
.|.++.++........ ....++++|+|+++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 7777655433222222 456778888888877765 12458
Q ss_pred EEEECCC----C-e-eeeeecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCc-----------ceeEEeCccCce
Q 008717 426 LLLDREA----N-F-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPK-----------LVSRYKGHKRAR 487 (556)
Q Consensus 426 ~i~d~~~----~-~-~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~~~-----------~~~~~~~~~~~~ 487 (556)
.+.|.++ + . ...+.-......+.++|||+++++++. ++++.+.|+.+... .+....--.++
T Consensus 299 ~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP- 377 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP- 377 (635)
T ss_pred EEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-
Confidence 8888887 2 3 666677788899999999999887765 78999999987521 23333333334
Q ss_pred eEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 488 FVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 488 ~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+...| .++|....|---|..|..|++..
T Consensus 378 --LHTaF-Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 --LHTAF-DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --ceEEE-CCCCCEEEeEeecceeEEEehHH
Confidence 44567 78888777888899999999876
No 332
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.2e-05 Score=76.30 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcc-cCC----HHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHH
Q 008717 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP-MHS----SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLI 136 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~-~~~----~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i 136 (556)
.+.-+.|+|..||.-+||..||..|.++|.+. +-. ..+...++++++|+...|+.-.+.-+..-...-..+-|.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 47789999999999999999999999999976 222 2577889999999999988776643222112223456889
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccccccc-ChhhHHHhhhccccCCc
Q 008717 137 LEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELASCIISPSK 183 (556)
Q Consensus 137 ~~q~~~ell~~~~~~~a~~~L~~~l~pl~~-~~~~~~~l~~~l~~~~~ 183 (556)
..|+|.||++.+++.+|+.+.++++.|... ..+++.....++.++..
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999875 55677777777776643
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00033 Score=71.68 Aligned_cols=226 Identities=13% Similarity=0.119 Sum_probs=121.2
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.+....-....+.++|+|++++.+ .||.-.|+..... .... .+.-....|.+.+ .+|+-..+++|.|+.-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEc
Confidence 333444557889999999999985 5788888874322 2212 1334567898844 5676677889999642
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
-..+....++.. ..+..+-. |..|...+.+ .|.+||+.++.+....... +|..+.|+++|++++..+.+ .+.
T Consensus 97 ~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 97 FKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp TEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred CccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 222222233322 12333322 7777777664 8999999987766655554 48999999999999988755 677
Q ss_pred EEECCCC------------eeeeeec-CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 427 LLDREAN------------FERWIEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 427 i~d~~~~------------~~~~~~~-~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++.... ....... ...|.+..|..+ .++-.+.. .|+. +-++ ....+..-..+.+.+..
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy- 240 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGY- 240 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEE-
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEE-
Confidence 7766554 3333333 788999999866 44444434 6666 3333 23333333456666444
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.++.+.|+....|+.|..+.+....
T Consensus 241 --~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 241 --LPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --ETTTTEEEEE-TT--EEEEE--HHH
T ss_pred --EccCCEEEEEECCCCEEEEEECHHH
Confidence 4566778888899999888776443
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.23 E-value=8.3e-05 Score=75.71 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=120.4
Q ss_pred EecCCCCCeEEEEeCCCCCEEEEEeC---C-CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-CCC--cEE
Q 008717 312 RLSGHRKPVFTVSWSPNDHQLLTCGQ---E-EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDK--SIC 384 (556)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg--~i~ 384 (556)
.+..-...+..-+|+|++..++..+. . ..+.++|+.+++...... ..+.-..-.|+|||++++.+. .|| .|+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 33444556777899999987665432 2 359999999887655544 222334568999999887655 455 577
Q ss_pred EEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE
Q 008717 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-~--~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
++|+.++....+..... .-..-.|+|||++++..+.. | .|.++|..... .........-..-.|+|||++|+..+
T Consensus 266 ~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 266 LMDLDGKNLPRLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EEcCCCCcceecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 88888877666444333 34477899999998876543 3 48888888776 33333333333788999999998877
Q ss_pred cC-Ce--EEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 461 IN-QE--IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 461 ~d-g~--I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
.. |. |.+.|+.++.. .+.+...... -...+ .++|+.+...+.
T Consensus 345 ~~~g~~~i~~~~~~~~~~-~~~lt~~~~~---e~ps~-~~ng~~i~~~s~ 389 (425)
T COG0823 345 SSGGQWDIDKNDLASGGK-IRILTSTYLN---ESPSW-APNGRMIMFSSG 389 (425)
T ss_pred ccCCceeeEEeccCCCCc-EEEccccccC---CCCCc-CCCCceEEEecc
Confidence 43 43 67777766632 3333322111 11333 677777665544
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.00026 Score=71.23 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=130.6
Q ss_pred ccCCCEEEEE---------eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 281 SHDGKYLASS---------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 281 sp~g~~las~---------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
|||+++++.. +..+.+.|||+.++. ...+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6888887764 234678899998742 223332357789999999999999876 57899999887754
Q ss_pred EEEEecC-----------------CCceEEEEEecCCCeEEEEeCC-Cc-------------------------------
Q 008717 352 LHVYEKT-----------------GVGLISCGWFLDGGGIFAGMTD-KS------------------------------- 382 (556)
Q Consensus 352 ~~~~~~~-----------------~~~v~~i~~~~~~~~l~~~~~d-g~------------------------------- 382 (556)
.+.-... -..-..+-|+|||++|+....| ..
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4322111 1123567899999998865322 12
Q ss_pred ----EEEEECCCCeEEEee-----cccCCCeeEEEEccCCCEEEEE--eCCC---eEEEEECCCCe---eeeeecCCce-
Q 008717 383 ----ICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISI--CREA---AILLLDREANF---ERWIEEEEVI- 444 (556)
Q Consensus 383 ----i~vwd~~~~~~~~~~-----~~~~~~v~~v~~s~~g~~l~~~--~~d~---~I~i~d~~~~~---~~~~~~~~~i- 444 (556)
+.++|+.+++...+. ......+..+.|.+++..++.. ..+. .+.++|..++. .........|
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 333444433321111 1122357889999998844433 3332 37778887765 1222223333
Q ss_pred --EEEEEc-CCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEE-EEeeCCC----cEEEEE
Q 008717 445 --TSFSLS-KDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI-ASGSEDS----QNVPEI 515 (556)
Q Consensus 445 --~~v~~s-p~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~sgs~dg----~v~iwd 515 (556)
....+. +++ .++.....+|.-+||-+.........+....-.+.. ...++++++.| +++..++ .|+.-+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~--i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTS--ILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEE--EEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecc--cceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 245554 555 455555567765554443322334455544444323 33346666654 4555432 566667
Q ss_pred cC-CCceeeeec
Q 008717 516 LL-SESVAAAAS 526 (556)
Q Consensus 516 ~~-~~~~~~~~~ 526 (556)
+. ++.+.....
T Consensus 314 ~~~~~~~~~LT~ 325 (353)
T PF00930_consen 314 LDSGGEPKCLTC 325 (353)
T ss_dssp TTETTEEEESST
T ss_pred eCCCCCeEeccC
Confidence 77 666654443
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=2.7e-05 Score=81.09 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=84.7
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 276 WFLQFSHDGKYLASSS----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 276 ~~~~~sp~g~~las~s----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
+-..|+|...++|.++ ..|+|.||--. +. ...-.+.+ -.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GE-PQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecC-CC-CCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3456888888888775 35788887433 22 11111222 2356799999888888888899999999988877
Q ss_pred EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC
Q 008717 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (556)
Q Consensus 352 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~ 389 (556)
......|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999999999999999999999775
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0041 Score=63.11 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=159.2
Q ss_pred cEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEECCCCcE
Q 008717 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGEC 351 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~ 351 (556)
....+...++|..+.... ....+.+.+.. ..... .....-...-..++.++.+..++.. ..+..|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~--~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVT--QSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceee--eeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677888885444332 22245554444 21111 1111111334567888888755544 4458999999888777
Q ss_pred EEEEecCCCceEEEEEecCCCeEEEEeC---CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEE
Q 008717 352 LHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (556)
Q Consensus 352 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i 427 (556)
........ ....++++|+++.+.++.. ++.+.+.|-.+..+........ ....++++|+|+.++... .++.|.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCCCeEEEEecCCCeEEE
Confidence 77665444 5678999999988888766 6788888988766655533332 238999999999766555 7889999
Q ss_pred EECCCCeeee------eecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCCcceeE-EeCccCceeEEEEeecCC
Q 008717 428 LDREANFERW------IEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGF 497 (556)
Q Consensus 428 ~d~~~~~~~~------~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~ 497 (556)
.|..+..... .........+.++|+|.++.+.... +.+...|..++ ..... +...... ...... .|
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~--~~~v~~-~p 262 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGA--PRGVAV-DP 262 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCC--CCceeE-CC
Confidence 9977766332 3334445678999999977766544 48999998887 44443 2222211 122344 89
Q ss_pred CCcEEEEeeC-CCcEEEEEcCCCceeeeec
Q 008717 498 EQAFIASGSE-DSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 498 ~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~ 526 (556)
+|+++.+... .+.+.+-|..+..+.....
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 9999888855 4889999988877766543
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=1.9e-05 Score=79.78 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=83.7
Q ss_pred cEEEEEEcc-CCCEEEEE----eCCCcE----EEEEeecCCeeEEEE-EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 274 EVWFLQFSH-DGKYLASS----SKDQSA----IIWEVKEDGQVSLKH-RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 274 ~V~~~~~sp-~g~~las~----s~dg~i----~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
...++.||. ++..+.|. +.+|.+ .+|++..+ +.+.+. +--.....|.+++++|+.+.++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 446778887 34444443 334443 46776643 232222 22356788999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~ 392 (556)
||...+.. .+....-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99876633 333445667889999999999999999999999986433
No 339
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.17 E-value=2.6e-06 Score=53.16 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcc
Q 008717 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP 93 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~ 93 (556)
.+.+++++|+|||...||..|+.+|++|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36799999999999999999999999999874
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=5.5e-05 Score=78.89 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=125.6
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcE--
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GEC-- 351 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~-- 351 (556)
+.+++|+|..-.|+.|-.-|.+.+|...+. +.......|+.+|..+.||++|..++++..-|.|.+|...- |+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 456999999989999999999999998754 23344457999999999999999999999999999998752 110
Q ss_pred -----------E----EEEe---------------cCCCceE-EEEE-------------ecCCCeEEEEeCCCcEEEEE
Q 008717 352 -----------L----HVYE---------------KTGVGLI-SCGW-------------FLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 352 -----------~----~~~~---------------~~~~~v~-~i~~-------------~~~~~~l~~~~~dg~i~vwd 387 (556)
+ ..+. +....+- -.-| .|+|..|+.++.+|+|+-.|
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd 218 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD 218 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc
Confidence 0 0000 0000000 0011 25677888999999998887
Q ss_pred CCCCeEEEeec---------------------------------------------------------------------
Q 008717 388 LDGRELESWKG--------------------------------------------------------------------- 398 (556)
Q Consensus 388 ~~~~~~~~~~~--------------------------------------------------------------------- 398 (556)
-.++.......
T Consensus 219 q~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKy 298 (1416)
T KOG3617|consen 219 QNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKY 298 (1416)
T ss_pred CCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcch
Confidence 54422111100
Q ss_pred --ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---------ee---eeecCCceEEEEEcCCCCEEEEEEcCC
Q 008717 399 --QKTLRISDMAITDDGKRIISICREAAILLLDREANF---------ER---WIEEEEVITSFSLSKDNKYLLVNLINQ 463 (556)
Q Consensus 399 --~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---------~~---~~~~~~~i~~v~~sp~~~~l~~~~~dg 463 (556)
.....++|+++...+..+..|...|.+.+|--.... .. .....+.|+.+.|.|--..+++.+...
T Consensus 299 g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~ 377 (1416)
T KOG3617|consen 299 GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEED 377 (1416)
T ss_pred hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhh
Confidence 112257899999888889999999999999644321 11 122357799999998766666655433
No 341
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.17 E-value=3.5e-06 Score=72.97 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=92.3
Q ss_pred HHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccccccc-ChhhHHHhhh
Q 008717 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELAS 176 (556)
Q Consensus 98 ~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~-~~~~~~~l~~ 176 (556)
+...++++|++|+++.|++.+......-......+.|.++.|+|+|++..++..+|+.+.|+.+.|... ..+.+..+..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456889999999999999999886422222234688999999999999999999999999999876665 5667777777
Q ss_pred ccccCCcccc-cCCCCCCchhHHHHHHHHHHHHhcCCCCccCC-cchHHHHHHHHHh
Q 008717 177 CIISPSKSLT-LGDSGQDTEDEKSRSKFLAKLQKLLPASVVIP-EKRLEHLVEKALD 231 (556)
Q Consensus 177 ~l~~~~~~~~-~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~rl~~ll~~~~~ 231 (556)
++.....+.. .....+ --....|.++++.+...+-.....| ...|..++.+...
T Consensus 84 lL~~~~~~~~~~s~~~~-l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~ 139 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKE-LLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLS 139 (145)
T ss_pred HHHcCCcccccchHHHH-HhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 7776654320 001111 1122567888888877654444444 4566666666544
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.12 E-value=0.0042 Score=64.15 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=132.7
Q ss_pred cEEEEEEccCCCEEEEE-eCCC----cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC---------
Q 008717 274 EVWFLQFSHDGKYLASS-SKDQ----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--------- 339 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~-s~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--------- 339 (556)
.+...++||||+++|.+ +..| .++++|+.++... ...+... ....+.|.+|++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--CCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34468899999999865 3333 4999999876322 1222221 122499999988877665433
Q ss_pred --cEEEEECCCCcE--EEEEecCCCc--eEEEEEecCCCeEEEEeCC----CcEEEEECCCC-----eEEEeecccCCCe
Q 008717 340 --AIRRWDVNSGEC--LHVYEKTGVG--LISCGWFLDGGGIFAGMTD----KSICLWDLDGR-----ELESWKGQKTLRI 404 (556)
Q Consensus 340 --~i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~l~~~~~d----g~i~vwd~~~~-----~~~~~~~~~~~~v 404 (556)
.|+.|++.++.. ...+...... ...+..++|+++++..... ..+.+.|+... ....+.....+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 378888877642 3555544333 5678899999998865432 35788888763 4444444433233
Q ss_pred eEEEEccCCCEEEEEe---CCCeEEEEECCCCe-----eeeeecCCc--eEEEEEcCCCCEEEEEEc-CC--eEEEEEcC
Q 008717 405 SDMAITDDGKRIISIC---REAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNKYLLVNLI-NQ--EIHLWSIE 471 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~---~d~~I~i~d~~~~~-----~~~~~~~~~--i~~v~~sp~~~~l~~~~~-dg--~I~lwd~~ 471 (556)
..+... .+.+++... ..+.|.-.++.... ..+..+... +..+.. .+.+|+.... ++ .|+++++.
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 333333 443444332 23668888887764 245555553 444444 4555555543 43 48899988
Q ss_pred CCCcceeEEeCccC-ceeEEEEeecCCCCcEE-EEee-C--CCcEEEEEcCCCceee
Q 008717 472 SDPKLVSRYKGHKR-ARFVIRSCFGGFEQAFI-ASGS-E--DSQNVPEILLSESVAA 523 (556)
Q Consensus 472 ~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l-~sgs-~--dg~v~iwd~~~~~~~~ 523 (556)
.+ ........... .+..+.. .++++.+ ++.+ . -++++-||+.+++...
T Consensus 358 ~~-~~~~~~~~p~~g~v~~~~~---~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 358 DG-KESREIPLPEAGSVSGVSG---DFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp -T-EEEEEEESSSSSEEEEEES----TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CC-cEEeeecCCcceEEeccCC---CCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33 34444433332 2333222 3344332 2222 2 4689999999988754
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.11 E-value=0.002 Score=65.07 Aligned_cols=231 Identities=13% Similarity=0.122 Sum_probs=129.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee----------------------------------------EEEEEe
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------------------------------------SLKHRL 313 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 313 (556)
.|..+.|+++..-|+.|...|.|.||.+..++.. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999889999999999999987643111 222233
Q ss_pred cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--c------CCCceEEEEEec-----CC---CeEEEE
Q 008717 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE--K------TGVGLISCGWFL-----DG---GGIFAG 377 (556)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~i~~~~-----~~---~~l~~~ 377 (556)
....++|++++.| |=-+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4457889999997 55699999999999999998877765522 2 234677888873 22 458889
Q ss_pred eCCCcEEEEECC--C-Ce----EEEeecccCCCeeEEE-EccC-----------------C---CEEEEEeCCCeEEEEE
Q 008717 378 MTDKSICLWDLD--G-RE----LESWKGQKTLRISDMA-ITDD-----------------G---KRIISICREAAILLLD 429 (556)
Q Consensus 378 ~~dg~i~vwd~~--~-~~----~~~~~~~~~~~v~~v~-~s~~-----------------g---~~l~~~~~d~~I~i~d 429 (556)
+..|.+.+|.+. . +. .......+.++|..+. ++.+ | .-++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999873 1 11 1111112233555544 3221 1 2245555678899999
Q ss_pred CCCCe--eeeeecCCceEEEEEc-----CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC--ceeEEEEeecCCCCc
Q 008717 430 REANF--ERWIEEEEVITSFSLS-----KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQA 500 (556)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~v~~s-----p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~ 500 (556)
..+.+ .+..........+.+- ..+..|++-..+|.|++|.+..- +.+..+.-... ....-.+++ +++|.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssi-s~~Gd 319 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSI-SRNGD 319 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE--TTS-
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEE-CCCCC
Confidence 98877 3333221223334442 35667888889999999999987 67766655321 000111344 67787
Q ss_pred EEEEeeC
Q 008717 501 FIASGSE 507 (556)
Q Consensus 501 ~l~sgs~ 507 (556)
.++-.+.
T Consensus 320 i~~~~gp 326 (395)
T PF08596_consen 320 IFYWTGP 326 (395)
T ss_dssp EEEE-SS
T ss_pred EEEEeCc
Confidence 6655543
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00018 Score=74.04 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=90.5
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
|...|.--+++..+++++.|+.-|.+++|+-..+. .......+..+.+..+..|++..++|+|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 44455566677789999999999999999987542 1222333455667778889999999999999999999886643
Q ss_pred EE-----EEE-ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 008717 351 CL-----HVY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (556)
Q Consensus 351 ~~-----~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~ 390 (556)
.. ... +.|...|++++|++|+..+++|...|+|..-.++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 111 13678899999999999999999999999888776
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.0017 Score=63.07 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=134.0
Q ss_pred EEccCCCEE-EEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 008717 279 QFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (556)
Q Consensus 279 ~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 357 (556)
.|.++...| .+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 466666644 4444677888888875421 2222 3333445444444556665543 466677666655333321
Q ss_pred -----CCCceEEEEEecCCCeEEEEeC-----------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 358 -----TGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 358 -----~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
.....+.....|+|.+.++... -|.|+.+|..+..... ...+-...+.++||||++.++.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-LDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-ecCcEEecCceEECCCCCEEEEEeC
Confidence 1245567888899877666444 1345555553344333 3332336789999999987777655
Q ss_pred -CCeEEEEECCC--Ce-------eeeeecCCceEEEEEcCCCCEEEEEEcCC-eEEEEEcCCCCcceeEEeCccCceeEE
Q 008717 422 -EAAILLLDREA--NF-------ERWIEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVI 490 (556)
Q Consensus 422 -d~~I~i~d~~~--~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg-~I~lwd~~~~~~~~~~~~~~~~~~~~i 490 (556)
.+.|+-|++.. +. .......+..-.++...+|.+.+++..+| .|.+|+.. + +++..+....... .
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~--t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRP--T 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCCC--c
Confidence 47888888763 11 11112346677888999998886555554 89999987 6 7888887775443 3
Q ss_pred EEeecCCCCcEEEEeeCC
Q 008717 491 RSCFGGFEQAFIASGSED 508 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~d 508 (556)
.++|.+++.+.|+..+..
T Consensus 259 ~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 259 NPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cceEeCCCcCEEEEEecC
Confidence 488988888776655543
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0023 Score=65.01 Aligned_cols=205 Identities=9% Similarity=0.085 Sum_probs=143.7
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEECCCC
Q 008717 274 EVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSG 349 (556)
Q Consensus 274 ~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~ 349 (556)
.-..+++++.+..+. +...++.|.+.|..+.. .......-. ....++++|+++.+..+.. ++++.+.|..++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 345678888888554 44456899999976542 222222111 5568899999988877766 688999999999
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEee----cccCCCeeEEEEccCCCEEEEEeCC--
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWK----GQKTLRISDMAITDDGKRIISICRE-- 422 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~----~~~~~~v~~v~~s~~g~~l~~~~~d-- 422 (556)
+..........+ ..+++.|+|+.++++. .++.|.+.|..+..+.... .........+.++|+|.++.+....
T Consensus 151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 888875544444 8899999999777766 6789999998876665300 1111256789999999977665544
Q ss_pred -CeEEEEECCCCe-eee-eecCC-ceEEEEEcCCCCEEEEEEcC-CeEEEEEcCCCCcceeEEeCcc
Q 008717 423 -AAILLLDREANF-ERW-IEEEE-VITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 423 -~~I~i~d~~~~~-~~~-~~~~~-~i~~v~~sp~~~~l~~~~~d-g~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+.+...|..++. ... ..... ....+.++|+|+++.+.... +.+.+.|..+. ..........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~ 295 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGN 295 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeecccc
Confidence 589999998887 222 12122 56778999999999888544 78999998886 5555554433
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.0066 Score=62.14 Aligned_cols=195 Identities=11% Similarity=0.177 Sum_probs=104.0
Q ss_pred EEEccCCCEEEEEeCC----------C-cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 278 LQFSHDGKYLASSSKD----------Q-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 278 ~~~sp~g~~las~s~d----------g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
++.+|.|.-+|....+ . .|.||+.. + . .+..+.-..+.|.++.|+.+ ..|+....||.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G-~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-G-K--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-C-C--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 4455555555554333 2 48888876 2 2 22333222388999999875 45666779999999998
Q ss_pred CCCcEEEEEe--cCCCceE-----EEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEeecccC--------CCeeE-EE
Q 008717 347 NSGECLHVYE--KTGVGLI-----SCGWFLDGGGIFAGMTDKSICLWDLDGREL--ESWKGQKT--------LRISD-MA 408 (556)
Q Consensus 347 ~~~~~~~~~~--~~~~~v~-----~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~--------~~v~~-v~ 408 (556)
. |+....+. .....|. ...+..+| ++.-..++.+.+.+--.... ........ ..... ..
T Consensus 109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 F-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred C-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6 44311111 0111222 22222244 33333445554443222111 11100000 00111 23
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 409 ~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
++.+....+....++.+.+.+-.... .....+++..+++||+|+++|.-..+|.+.+.+..-. +....+...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~--~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK--QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc--cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecC
Confidence 44455555555556666644433321 1233568999999999999999999999988876544 455555443
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=1.6e-06 Score=87.46 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=130.6
Q ss_pred CCeEEEEeCCCC--CEEEEEeCCCcEEEEECCCCcE--EEEEecCCCceEEEEEec-CCCeEEEEe----CCCcEEEEEC
Q 008717 318 KPVFTVSWSPND--HQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGM----TDKSICLWDL 388 (556)
Q Consensus 318 ~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~----~dg~i~vwd~ 388 (556)
..+.|+++.-+. ..++.|..+|.|.+-.++...- .....++..+.++++|++ |.+.|++|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677765533 4778888899999988764322 234456678899999998 666777764 3567999999
Q ss_pred CCC-----eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcC-CCCEEEEEEc
Q 008717 389 DGR-----ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSK-DNKYLLVNLI 461 (556)
Q Consensus 389 ~~~-----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp-~~~~l~~~~~ 461 (556)
.++ +...+.........+++|..+.+.+++|.....++++|++... ....-....+..+.++| .+.|+++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 754 1122222223356789999899999999999999999998654 22223345677888999 778888777
Q ss_pred CCeEEEEE-cCCCCcceeEEeCccC----ceeEEEEeecCCCCcEEEEee-CCCcEEEEEcC
Q 008717 462 NQEIHLWS-IESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGS-EDSQNVPEILL 517 (556)
Q Consensus 462 dg~I~lwd-~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~~ 517 (556)
||.|-+|| .++-..++..+..... ..+.+..|.+. .|. +++.+ ..++|+.+++.
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tgl-la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGL-LAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cch-hhhhccCcceEEEeccc
Confidence 99999999 3333244444432222 24444455422 444 44444 45789999875
No 349
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.02 E-value=3.8e-06 Score=59.85 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCh
Q 008717 97 SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKV 150 (556)
Q Consensus 97 ~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~~ell~~~~~ 150 (556)
.++..+++.|+.|+|++|++.+...........+.+.|.+++|+|+|+++.++.
T Consensus 3 ~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 3 DERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 357889999999999999999998865444445578999999999999988764
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.99 E-value=0.00071 Score=73.01 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=96.3
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCc-eEEEEEec-----CCCeEEEEeCCCcEEEEECCC--CeEEEee---cccCCCee
Q 008717 337 QEEAIRRWDVNSGECLHVYEKTGVG-LISCGWFL-----DGGGIFAGMTDKSICLWDLDG--RELESWK---GQKTLRIS 405 (556)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~l~~~~~dg~i~vwd~~~--~~~~~~~---~~~~~~v~ 405 (556)
....|+-.|+.+|+.+..+..+... |..++-.. ....-++|-.+..+..||.+- .++.... ........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999987643 54443211 234567888889999999973 2222111 11223678
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
|++-+.+| +||+|+.+|.||+||.-..+ ..+.+...+|..|..+.||+|+++.+ +..|.|++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 88888777 68999999999999954433 44446689999999999999998877 667888875
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.0037 Score=65.77 Aligned_cols=232 Identities=13% Similarity=0.124 Sum_probs=132.9
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC--CeEEEEeCC--CCCEEEEEe---------CCCcEEEEECCCCcE
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK--PVFTVSWSP--NDHQLLTCG---------QEEAIRRWDVNSGEC 351 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~ 351 (556)
..++.++.++.|.-+|..++.. +-.+..... .-..+.-+| .+..++.++ .+|.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~---~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ---VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE---eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5777888899999999987632 233222111 000111122 124455543 367899999999998
Q ss_pred EEEEecCCC--------------------ce-EEEEEecCCCeEEEEeCCC------------------cEEEEECCCCe
Q 008717 352 LHVYEKTGV--------------------GL-ISCGWFLDGGGIFAGMTDK------------------SICLWDLDGRE 392 (556)
Q Consensus 352 ~~~~~~~~~--------------------~v-~~i~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~ 392 (556)
+-.++.... .+ ...++.+.+..++.++.++ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877654211 01 1234444567788887665 68888998766
Q ss_pred EEEeecccCCCe------eEEEEc----cCCC---EEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEE
Q 008717 393 LESWKGQKTLRI------SDMAIT----DDGK---RIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 393 ~~~~~~~~~~~v------~~v~~s----~~g~---~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
..-......... ....+. -+|. .+++++.+|.+...|.++++........ ...++.+| ..++++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~ 344 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLG 344 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEc
Confidence 543322110011 111111 1333 5778889999999999999833322111 12234444 233332
Q ss_pred ------------------EcCCeEEEEEcCCCCcceeEEeCcc--------CceeEEEEeecCCCCcEEEEeeCCCcEEE
Q 008717 460 ------------------LINQEIHLWSIESDPKLVSRYKGHK--------RARFVIRSCFGGFEQAFIASGSEDSQNVP 513 (556)
Q Consensus 460 ------------------~~dg~I~lwd~~~~~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~sgs~dg~v~i 513 (556)
..+|.+.-.|+.++ +.+-+..... .....-.. ...+.+|+.++.||.|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~---~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSL---ATAGNLVFAGAADGYFRA 420 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcce---EecCCeEEEECCCCeEEE
Confidence 13577888898888 6665554321 01000001 125678889999999999
Q ss_pred EEcCCCceeeeec
Q 008717 514 EILLSESVAAAAS 526 (556)
Q Consensus 514 wd~~~~~~~~~~~ 526 (556)
+|..+|+++....
T Consensus 421 ld~~tG~~lW~~~ 433 (488)
T cd00216 421 FDATTGKELWKFR 433 (488)
T ss_pred EECCCCceeeEEE
Confidence 9999999876543
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.97 E-value=0.011 Score=57.16 Aligned_cols=225 Identities=14% Similarity=0.146 Sum_probs=128.1
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE------
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY------ 355 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 355 (556)
..++.|+.|+.+| +.+++...... ..... +...|..+...|+-+.+++-+ |+.+.++++.+-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3678899999888 89999832221 22221 223399999999877777665 499999998754332210
Q ss_pred --------ecCCCceEEEE--EecCCCeEEEEeCCCcEEEEECCC------CeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 356 --------EKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 356 --------~~~~~~v~~i~--~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
......+..++ -...+...++......|.+|.... ...+.+... ..+.+++|. ++.++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 01122344333 112344444444446888887753 233333333 378999998 4567776
Q ss_pred eCCCeEEEEECCCCe-eeeeec-------------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee--EEeCc
Q 008717 420 CREAAILLLDREANF-ERWIEE-------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--RYKGH 483 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~-~~~~~~-------------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~--~~~~~ 483 (556)
.. ....+.|+.++. ..+... ..++..+.+. ++.+|++- |..-.+.|... +..+ .+.-.
T Consensus 155 ~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G--~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 TS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNG--EPSRKSTIQWS 228 (275)
T ss_pred eC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCC--CcCcccEEEcC
Confidence 64 458889998766 322211 1223333333 45666543 33444455433 2222 33222
Q ss_pred cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 484 KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
..+ ..+.+ ...||++.+. +.|.||++.++++++......
T Consensus 229 ~~p---~~~~~---~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 229 SAP---QSVAY---SSPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred Cch---hEEEE---ECCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 222 22333 2347776666 459999999999988776544
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.96 E-value=0.0004 Score=69.88 Aligned_cols=194 Identities=16% Similarity=0.094 Sum_probs=114.1
Q ss_pred CCCCCEEEEEe---------CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 008717 326 SPNDHQLLTCG---------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (556)
Q Consensus 326 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 396 (556)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++.... +.|++++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence 57777777642 236799999999775544333 556788999999999998864 7899999877665554
Q ss_pred eccc-----------------CCCeeEEEEccCCCEEEEEeCC------------------------------------C
Q 008717 397 KGQK-----------------TLRISDMAITDDGKRIISICRE------------------------------------A 423 (556)
Q Consensus 397 ~~~~-----------------~~~v~~v~~s~~g~~l~~~~~d------------------------------------~ 423 (556)
.... -+.-..+-|||||++|+....| -
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 4322 1234678899999998876433 1
Q ss_pred eEEEEECCCCee-eee------ecCCceEEEEEcCCCCEEEEEEcC--C---eEEEEEcCCCCcceeEEeCcc-Ccee-E
Q 008717 424 AILLLDREANFE-RWI------EEEEVITSFSLSKDNKYLLVNLIN--Q---EIHLWSIESDPKLVSRYKGHK-RARF-V 489 (556)
Q Consensus 424 ~I~i~d~~~~~~-~~~------~~~~~i~~v~~sp~~~~l~~~~~d--g---~I~lwd~~~~~~~~~~~~~~~-~~~~-~ 489 (556)
.+.++|+.+++. ... .....+..+.|.++++.|++.-.+ . .+.++|..++ .....+.... ..+. .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg-~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG-ETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT-TCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC-ceeEEEEecCCcceeee
Confidence 255566666652 111 234558889999999844443322 2 4777888776 3322222111 1110 0
Q ss_pred EEEeec-CCCCcEEEEeeCCCc--EEEEEcCCCcee
Q 008717 490 IRSCFG-GFEQAFIASGSEDSQ--NVPEILLSESVA 522 (556)
Q Consensus 490 i~~~~~-s~~~~~l~sgs~dg~--v~iwd~~~~~~~ 522 (556)
-...++ ..++.+|.....||- |+..+..++...
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~ 273 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR 273 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccccee
Confidence 113332 344556666667774 555566666544
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00014 Score=74.79 Aligned_cols=154 Identities=13% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE-EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-- 392 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~-- 392 (556)
|...|.--+++..+++++.|+.-|.+++|+-.+++.... ..+..+.+..+..+++..+++.|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344555566777899999999999999999776654322 22345566777888888899999999999999885321
Q ss_pred --EE--EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEEEEcC
Q 008717 393 --LE--SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 393 --~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~~~d 462 (556)
.. .....|...|++++|++++..+++|...|+|..-.+.+.. ..+....+.|..+... ..+|++++.-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 11 1122235589999999999999999999999998887722 4455667778777665 3344444433
Q ss_pred CeEEEEEcCC
Q 008717 463 QEIHLWSIES 472 (556)
Q Consensus 463 g~I~lwd~~~ 472 (556)
.. .+++++.
T Consensus 190 r~-~Lc~tE~ 198 (726)
T KOG3621|consen 190 RC-ILCQTEA 198 (726)
T ss_pred hh-heeecch
Confidence 32 3556554
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.0034 Score=58.93 Aligned_cols=199 Identities=14% Similarity=0.145 Sum_probs=109.3
Q ss_pred EEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
+.+.+-...+..++|+|+.+ ++++....+.|..++.. +.+.....+.+ .+..-.+++..++.++++--.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 45666777899999999766 45555566666666643 43333333444 3567889998888777776678999999
Q ss_pred ECCCCc------EEEEEe-----cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC----CeEEEee-------cccCC
Q 008717 345 DVNSGE------CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELESWK-------GQKTL 402 (556)
Q Consensus 345 d~~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~-------~~~~~ 402 (556)
++.... ....+. .++..+-.++|+|.++.|+++-...-..+|.++. ..+.... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 883321 112222 2355689999999888888887766666665543 1111110 11223
Q ss_pred CeeEEEEccCC-CEEEEEeCCCeEEEEECCCCeeeeeecC----------CceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 403 RISDMAITDDG-KRIISICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 403 ~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~~~~~~~~----------~~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
.+.+++++|.. .+++....+..|..+|............ ...-.|+|+++|++.++ ++-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 57899999965 4566666778899999554432222211 24778999999965544 456655554
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.014 Score=53.34 Aligned_cols=226 Identities=12% Similarity=0.050 Sum_probs=123.2
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEE
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLIS 364 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 364 (556)
.+++.|+..+.+.--|..+++- .-.. + -...|.+-+.- -|++++.|+..|.+++.+.++|.....+..-..--..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~-~We~-i--lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL-IWEA-I--LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE-Eeeh-h--hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 4566677777777777766521 1111 1 11222222211 4778999999999999999999877776644332233
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eee--eecC
Q 008717 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW--IEEE 441 (556)
Q Consensus 365 i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~--~~~~ 441 (556)
....+++..+..|+.|++.+..|.++........-..+...+-+..|-...+..+...|.|.--...... ..+ ....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~ 178 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF 178 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence 4456789999999999999999998754332222222234455666633344455555666555555443 111 1122
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcE--------EE
Q 008717 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQN--------VP 513 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v--------~i 513 (556)
++|.+--.. -+..+..++-||.+.-+| ..+ +.+.++. ..++++. ..|-..|..+.|..+.++..+ .+
T Consensus 179 ~PiF~splc-v~~sv~i~~VdG~l~~f~-~sG-~qvwr~~-t~GpIf~-~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 179 GPIFASPLC-VGSSVIITTVDGVLTSFD-ESG-RQVWRPA-TKGPIFM-EPCESRPSCQQISLENENCFCAPLPIAGHLL 253 (354)
T ss_pred CccccCcee-ccceEEEEEeccEEEEEc-CCC-cEEEeec-CCCceec-ccccCCCcceEEEEecCCeEEEeccccceEE
Confidence 333211000 134555566677777776 445 4555443 2223322 122213544555555555433 34
Q ss_pred EEcCCCc
Q 008717 514 EILLSES 520 (556)
Q Consensus 514 wd~~~~~ 520 (556)
|..++|.
T Consensus 254 w~~~~g~ 260 (354)
T KOG4649|consen 254 WATQSGT 260 (354)
T ss_pred EEecCCc
Confidence 6555553
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.0027 Score=62.47 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=108.5
Q ss_pred EEeCCCCCEEEEEeC-C--CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc
Q 008717 323 VSWSPNDHQLLTCGQ-E--EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (556)
Q Consensus 323 l~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 399 (556)
=+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+.........++|+++.++-......|.-.|+++.+...+...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 367889987777665 4 4688889999887665554333333566778888877666667899999998877666665
Q ss_pred cCCCeeEEEEc--cCCCEEEEEeC----------------------CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCC
Q 008717 400 KTLRISDMAIT--DDGKRIISICR----------------------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNK 454 (556)
Q Consensus 400 ~~~~v~~v~~s--~~g~~l~~~~~----------------------d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~ 454 (556)
....+....|. .|+..++-.-. ...|.-.|+.+++ .........+..+.|||...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 55455555554 45655443211 2457778888888 66677788899999999765
Q ss_pred EEEEEEcCC-----eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee-----CCCcEEEEEcCCCce
Q 008717 455 YLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-----EDSQNVPEILLSESV 521 (556)
Q Consensus 455 ~l~~~~~dg-----~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs-----~dg~v~iwd~~~~~~ 521 (556)
-+++=+..| .-+||-+.+.......+..+.. ...+.--||.|||..|.--+ .+..|.-+|+.+++.
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 555544333 2367777655455666665554 34455677899998765432 244566677777654
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.031 Score=52.54 Aligned_cols=199 Identities=10% Similarity=0.075 Sum_probs=112.3
Q ss_pred EEecCCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 311 HRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45666667799999999866 5555566788888886 58888877644 356788999877766666656899999988
Q ss_pred CC--Ce-----EEEee--c--ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC--C-e-eee---------eecCCce
Q 008717 389 DG--RE-----LESWK--G--QKTLRISDMAITDDGKRIISICREAAILLLDREA--N-F-ERW---------IEEEEVI 444 (556)
Q Consensus 389 ~~--~~-----~~~~~--~--~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~--~-~-~~~---------~~~~~~i 444 (556)
.. .. ...+. . .+...+-.++|+|.++.|+++-...-..+|.+.. . . ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 32 11 11121 1 1233689999999988888887777777777654 1 1 111 0123457
Q ss_pred EEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccC------c-eeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 445 TSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------A-RFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 445 ~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~------~-~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
.+++++|.. .+++....+..|..+| .++ +++..+.-..+ . ...=.+++ .++|+ |+..++-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~-d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQG-RVVSSLSLDRGFHGLSKDIPQPEGIAF-DPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE--TT---EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCC-CEEEEEEeCCcccCcccccCCccEEEE-CCCCC-EEEEcCCceEEEe
Confidence 889999964 5666666678888898 444 55554432220 0 00122555 77775 4456677766665
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.029 Score=55.45 Aligned_cols=234 Identities=14% Similarity=0.079 Sum_probs=121.1
Q ss_pred EEccCCCEEEEEe-CCCc--EEEEEeecCCeeEEEEEecCCCC-CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 279 QFSHDGKYLASSS-KDQS--AIIWEVKEDGQVSLKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 279 ~~sp~g~~las~s-~dg~--i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
+|.+||+.|+.++ .||. +.+.|+.++ .+..+..+.+ ......++|+++.++-...+..|+-.|+.+.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 5788998766654 4555 455555543 2334444332 233567788888887666667899999999987777
Q ss_pred EecCCCceEEEEEec--CCCeEEEEe----------------------CCCcEEEEECCCCeEEEeecccCCCeeEEEEc
Q 008717 355 YEKTGVGLISCGWFL--DGGGIFAGM----------------------TDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (556)
Q Consensus 355 ~~~~~~~v~~i~~~~--~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s 410 (556)
+......+-...|.. |+..++-.- ..+.|...|+++++...+..... .+..+.|+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fs 196 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFS 196 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccC
Confidence 777766665566643 555544321 12246667888888777766554 78999999
Q ss_pred cCCCEEEEEeCCCe-----EEEEECCC--Ce-eeeee--cCCceEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCCc
Q 008717 411 DDGKRIISICREAA-----ILLLDREA--NF-ERWIE--EEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDPK 475 (556)
Q Consensus 411 ~~g~~l~~~~~d~~-----I~i~d~~~--~~-~~~~~--~~~~i~~v~~sp~~~~l~~~~~-----dg~I~lwd~~~~~~ 475 (556)
|....+++-|..|- -+||-+.+ .. ..... ....+..=-|.|||..|..-+. +..|.-+|+.++ +
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~-~ 275 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG-E 275 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-C
Confidence 97766666555431 25555443 32 22221 2333555679999987765332 335777788776 3
Q ss_pred ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC----------------cEEEEEcCCCceee
Q 008717 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS----------------QNVPEILLSESVAA 523 (556)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg----------------~v~iwd~~~~~~~~ 523 (556)
....... .. +..... ++||++++.=+.|. -|+++++..+....
T Consensus 276 ~~~~~~~--p~--~~H~~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 276 RRRLMEM--PW--CSHFMS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp EEEEEEE---S--EEEEEE--TTSSEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred ceEEEeC--Cc--eeeeEE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 3222221 11 223333 78999887544432 46677887766543
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.0041 Score=63.73 Aligned_cols=144 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEE-ECCCC
Q 008717 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW-DLDGR 391 (556)
Q Consensus 313 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vw-d~~~~ 391 (556)
+.........+.++|+|+.++.+ .||...|+.....+... + +.-...+|.+ .+.+++-..++.|.++ +++..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c----CceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 33344557899999999999984 56778888754443322 2 2334678988 4456776668889996 44332
Q ss_pred eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 392 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
....+.... .+..+-. |..|...+. +.|.+||+.+++ ...+.. .+|..+.|+++|.+++..+.+ .+.|++.
T Consensus 101 ~~k~i~~~~--~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLPF--SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TT-----SS---EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcCCc--ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 222222221 2444433 776766654 489999999998 444433 348999999999999999854 6777764
Q ss_pred C
Q 008717 471 E 471 (556)
Q Consensus 471 ~ 471 (556)
.
T Consensus 173 ~ 173 (443)
T PF04053_consen 173 N 173 (443)
T ss_dssp -
T ss_pred c
Confidence 3
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.72 E-value=0.019 Score=58.17 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=116.2
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------EEEEE
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-------------------------------------------CLHVY 355 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------~~~~~ 355 (556)
.|+.+.|+++..-|+.+...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888888888888888888888888653211 11112
Q ss_pred ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec--------ccCCCeeEEEEcc-----CC---CEEEEE
Q 008717 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG--------QKTLRISDMAITD-----DG---KRIISI 419 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~v~~s~-----~g---~~l~~~ 419 (556)
....++|++++.+ |-.++++|..+|.+.+.|+++..+..... .....|+++.|+. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346889999887 77799999999999999999866543321 1223678888862 33 368889
Q ss_pred eCCCeEEEEECCC---Ce--eee----eecCCceEEEE-EcCC-C-------------------CEEEEEEcCCeEEEEE
Q 008717 420 CREAAILLLDREA---NF--ERW----IEEEEVITSFS-LSKD-N-------------------KYLLVNLINQEIHLWS 469 (556)
Q Consensus 420 ~~d~~I~i~d~~~---~~--~~~----~~~~~~i~~v~-~sp~-~-------------------~~l~~~~~dg~I~lwd 469 (556)
+..|.+.+|.+.- +. ..+ ..+.++|..+. |+.+ | ..+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998752 11 111 13455655554 3221 0 1234444588899999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeec----CCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFG----GFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~----s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
..+. +..++.. .....+-.+++. ...+..|++-..+|.|+++.+..-+.+.
T Consensus 242 ~~~~-k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 242 PPKS-KGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp TT----EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred CCCC-cccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 8877 5544443 222222223332 2356778889999999999998765543
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.027 Score=54.58 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=119.9
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC-CCcEEE
Q 008717 277 FLQFSHDGKYLASS--SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLH 353 (556)
Q Consensus 277 ~~~~sp~g~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~ 353 (556)
..++|.||++++.. +-..+|.|-|+... +.+..+. -.+ +..+--++ ..-+.+.|.||.+.-..+. .|+...
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---kvv~ei~-~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAK---KVVGEID-TPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTT---EEEEEEE-GTS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCC---ceeeeec-CCC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeE
Confidence 45788888887764 34457888888754 3334433 222 22222222 2457888899999888887 566543
Q ss_pred EEe----cCCCceE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEE---eecc---------cCCCeeEEEEccCCCEE
Q 008717 354 VYE----KTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELES---WKGQ---------KTLRISDMAITDDGKRI 416 (556)
Q Consensus 354 ~~~----~~~~~v~-~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~---------~~~~v~~v~~s~~g~~l 416 (556)
+.. ....++. .-++...+..++..+.+|.|+-.|+.+..... +... ..+.-.-+++++..+.|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 321 1122222 33455566677778889999999997644322 2110 01133457787766555
Q ss_pred EEEeC---C-------CeEEEEECCCCe-eeeeecCCceEEEEEcCCCC-EEEEEE-cCCeEEEEEcCCCCcceeEEeCc
Q 008717 417 ISICR---E-------AAILLLDREANF-ERWIEEEEVITSFSLSKDNK-YLLVNL-INQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 417 ~~~~~---d-------~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~-~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
++.-. + ..|.+||+.+++ ...+....++.++.++.+.+ +|++.+ .++.|.+||..++ +.++++..-
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~~~~l 331 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRSIEQL 331 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEeehhcc
Confidence 44322 1 238899999998 55555567788999999876 554443 5789999999999 888888654
Q ss_pred cC
Q 008717 484 KR 485 (556)
Q Consensus 484 ~~ 485 (556)
..
T Consensus 332 G~ 333 (342)
T PF06433_consen 332 GE 333 (342)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0049 Score=66.77 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=94.1
Q ss_pred CEEEEE-eCCCcEEEEEeecCCeeEEEEEecCCCCC-eEEEEeCC-----CCCEEEEEeCCCcEEEEECCCCc--EEEE-
Q 008717 285 KYLASS-SKDQSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGE--CLHV- 354 (556)
Q Consensus 285 ~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~~- 354 (556)
++|+.- .....|+-.|++.+ +.+..+..|... |..++-.. +...-+.|-.+..+..||.+-.. ++..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ceEeecCCCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 344432 34567888888876 566677666643 55544321 13345667777899999997532 2211
Q ss_pred Ee--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q 008717 355 YE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (556)
Q Consensus 355 ~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~ 430 (556)
.. .......|++-+.+| +||+|+.+|.|++||--+...++....-+.+|..|..+.||+++++.|. ..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 11 234556777776554 8999999999999996665555555555569999999999999887665 46667764
No 364
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.66 E-value=0.035 Score=56.13 Aligned_cols=83 Identities=14% Similarity=0.010 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC----------------CcE-EEE
Q 008717 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE----------------QAF-IAS 504 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----------------~~~-l~s 504 (556)
..+.+++.+|++++.++...=|.|.++|+.++ ..++.++|..+.-...--.. ... ..+ ++-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~-~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVP-EEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEee-cccccccccccccCCCCcceEEEEEE
Confidence 44788999999999998877799999999998 88888888766432211111 111 112 333
Q ss_pred eeCCCcEEEEEcCCCceeeeec
Q 008717 505 GSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~~~~ 526 (556)
+-.-|.|-||.++++..+....
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5568999999999988766554
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.66 E-value=0.0074 Score=59.91 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=107.9
Q ss_pred CcEEEEECCCCcEEEEEecC-CCceEEEEEec---C----CCeEEEEeC---------C-CcEEEEECCCC-----eEEE
Q 008717 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWFL---D----GGGIFAGMT---------D-KSICLWDLDGR-----ELES 395 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~---~----~~~l~~~~~---------d-g~i~vwd~~~~-----~~~~ 395 (556)
..|++.|..+.+.+..+.-. ...+++++... + ..++++|+. . |.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888898888877666533 33445444322 2 466777653 2 88999999773 3332
Q ss_pred ee-cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-ee---eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 396 WK-GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ER---WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 396 ~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~---~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
.. ....++|++++-- ++ .++++ .++.|.+|++.... .. .......++++... ++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 21 2224588888876 33 44443 45899999998776 22 22233456555554 669999998888888866
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+.....+..+.....+.++..+.|. ++++.++.+..+|.+.++....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECC
Confidence 5432435555444455566667774 3446899999999999998763
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.63 E-value=0.021 Score=56.72 Aligned_cols=179 Identities=17% Similarity=0.214 Sum_probs=109.7
Q ss_pred CCEEEEEeC----------CCcEEEEEeecC----CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 284 GKYLASSSK----------DQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 284 g~~las~s~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
..+|+.|+. .|.|.++++... .+++.+... ...++|++++-- ++. |+.+. ++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence 467777643 288999999863 244444443 347889998876 344 44433 479999999877
Q ss_pred c-EEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEE--ECCCCeEEEeec-ccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 350 E-CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLW--DLDGRELESWKG-QKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 350 ~-~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
+ ....-.. ....+.++... ++++++|.....+.++ +-....+..... .....++++.|-++++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 4433322 23456666554 6699999988888877 443443433332 22336888889877779999999999
Q ss_pred EEEEECCCC---------e---eeeeecCCceEEE---EEcC--CCC------EEEEEEcCCeEEEE
Q 008717 425 ILLLDREAN---------F---ERWIEEEEVITSF---SLSK--DNK------YLLVNLINQEIHLW 468 (556)
Q Consensus 425 I~i~d~~~~---------~---~~~~~~~~~i~~v---~~sp--~~~------~l~~~~~dg~I~lw 468 (556)
+.++..... . .........|+++ ++.| .+. .++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999987631 2 2223345667777 5555 222 47788889988743
No 367
>PHA02713 hypothetical protein; Provisional
Probab=97.62 E-value=0.0035 Score=66.89 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=118.2
Q ss_pred cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC------CcEEEEECCCCcEEEE--EecCCCceEEEE
Q 008717 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDVNSGECLHV--YEKTGVGLISCG 366 (556)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~ 366 (556)
.+..||..++ .+..+..+...... .+++. -++..++.||.+ ..+..||..++..... +....... +++
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 4667777654 22222222211111 12222 256677777753 3477889877653221 11111111 222
Q ss_pred EecCCCeEEEEeCCC-----cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-------------------
Q 008717 367 WFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE------------------- 422 (556)
Q Consensus 367 ~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d------------------- 422 (556)
.-+|...+.|+.++ .+..||..++.-..............+..-+|...+.|+.+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 23677888888764 48889988764433322221111111223367777777754
Q ss_pred ----CeEEEEECCCCe-eeeeec-CCceEEEEEcCCCCEEEEEEcC------CeEEEEEcCC-C-CcceeEEeCccCcee
Q 008717 423 ----AAILLLDREANF-ERWIEE-EEVITSFSLSKDNKYLLVNLIN------QEIHLWSIES-D-PKLVSRYKGHKRARF 488 (556)
Q Consensus 423 ----~~I~i~d~~~~~-~~~~~~-~~~i~~v~~sp~~~~l~~~~~d------g~I~lwd~~~-~-~~~~~~~~~~~~~~~ 488 (556)
..+..||..+.+ ...... ......-...-+|+..++|+.+ ..+..||..+ . ...+..+......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-- 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-- 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--
Confidence 247889988877 222111 1111111122256666777654 2467899886 3 2333333322222
Q ss_pred EEEEeecCCCCcEEEEeeCCC--cEEEEEcCCCceeeeecCCCc
Q 008717 489 VIRSCFGGFEQAFIASGSEDS--QNVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 489 ~i~~~~~s~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~~ 530 (556)
..++ .-+|++.++|+.|| .+..||..+.+-......|.+
T Consensus 506 -~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 506 -LHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred -ceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 2222 23788889999888 788888888877655555554
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0013 Score=65.78 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-------eEEEEeCCCcEEEEECC--CCeEEEee
Q 008717 328 NDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-------GIFAGMTDKSICLWDLD--GRELESWK 397 (556)
Q Consensus 328 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~dg~i~vwd~~--~~~~~~~~ 397 (556)
+.+.|+ ++.....++-.|+..|+.+.....+.. |+-+.+.|+.+ .-+.|-.|..|+-||.+ +.....+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 334433 444456788899999999999987766 67777777643 23456778899999997 33222222
Q ss_pred ccc----CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 398 GQK----TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 398 ~~~----~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
..+ .....|.+-..+| ++++|+.+|.|++||.-... ..+.+...+|..+..+.+|++|+..+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 211 1256677776666 68999999999999984433 55667789999999999999998776 6777777764
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.008 Score=64.10 Aligned_cols=184 Identities=11% Similarity=0.089 Sum_probs=107.2
Q ss_pred CcEEEEEEccCCCEEEEEe------CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--------
Q 008717 273 DEVWFLQFSHDGKYLASSS------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-------- 338 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-------- 338 (556)
..+...++||||+.+|... .|..-.||-...++....+ ..+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999999988765 3544555654433332222 2222 37888999999888776532
Q ss_pred ----CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEE---EECCCCeEE-----EeecccCCCeeE
Q 008717 339 ----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL---WDLDGRELE-----SWKGQKTLRISD 406 (556)
Q Consensus 339 ----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~-----~~~~~~~~~v~~ 406 (556)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|++ -....+... .+...-...+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444433322 2345699999999999988876 477777 333344311 122222224688
Q ss_pred EEEccCCCEEEEEeCCCe--EEEEECCCCeeee-ee--cCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 407 MAITDDGKRIISICREAA--ILLLDREANFERW-IE--EEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~~--I~i~d~~~~~~~~-~~--~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
+.|..++.++ ++..++. +...++....... .. ...++..++-+++ -+++...++.+.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 9999999854 4444444 4444444433222 12 2556777777753 4555566664433
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0004 Score=70.72 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=77.4
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeE-EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
-...|..+.|+|.-.++|++..+|.|.+..++ . +.+.++..|...++ +++|.|||+.|+.|-.||+|++.|+.++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-W---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-c---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44568889999999999999999999999887 2 45677776777777 9999999999999999999999999998
Q ss_pred cEEEEEe-cCCCceEEEEEe
Q 008717 350 ECLHVYE-KTGVGLISCGWF 368 (556)
Q Consensus 350 ~~~~~~~-~~~~~v~~i~~~ 368 (556)
..+..+. .....|.++-|.
T Consensus 95 ~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred Cceeccccccccchheeecc
Confidence 8776632 224567777775
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.049 Score=55.80 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=92.9
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEE---EEEecCCCCCeEEEEeCCCCCEEEEEeC
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 337 (556)
.++.+..+.--.+.|.++.|+.+.. |+.-..||.++++|+....++.. .....-....+....+..+|-.++ ..
T Consensus 69 sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~ 145 (410)
T PF04841_consen 69 SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TG 145 (410)
T ss_pred CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE--CC
Confidence 3445555443337889999988655 45556899999999862210000 011111112222333333553333 33
Q ss_pred CCcEEEEECCCCc-EEEEEecCCC---------ceEE-EEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeE
Q 008717 338 EEAIRRWDVNSGE-CLHVYEKTGV---------GLIS-CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD 406 (556)
Q Consensus 338 dg~i~iwd~~~~~-~~~~~~~~~~---------~v~~-i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 406 (556)
++.+.+.+-.... ..+.+..-.. .... ..++.+....+....++.+.+.+-..- .... ..+++..
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--~~i~--~~~~i~~ 221 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--KQID--SDGPIIK 221 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--cccc--CCCCeEE
Confidence 4444443322211 1111111000 0000 123334444444444455553332211 0111 1247999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC
Q 008717 407 MAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN 453 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~ 453 (556)
|++||+|++++.-..+|.+.+.+..-.+ ............+.|+-+.
T Consensus 222 iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 9999999999999999999998765544 1122224556677777554
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.51 E-value=0.13 Score=53.13 Aligned_cols=200 Identities=14% Similarity=0.161 Sum_probs=113.1
Q ss_pred eEEEEeCCCCCEEEEE-eCCC----cEEEEECCCCcEEEEE-ecCCCceEEEEEecCCCeEEEEeCCC-----------c
Q 008717 320 VFTVSWSPNDHQLLTC-GQEE----AIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDK-----------S 382 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg-----------~ 382 (556)
+....+||||++++.+ +..| .++++|+.+|+.+... .... ...+.|.+|++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999988865 3344 5999999999776532 2221 23499999988877665333 3
Q ss_pred EEEEECCCCe---EEEeecccCCC-eeEEEEccCCCEEEEEeC---C-CeEEEEECCCC-----e-eeeeecCCceEEEE
Q 008717 383 ICLWDLDGRE---LESWKGQKTLR-ISDMAITDDGKRIISICR---E-AAILLLDREAN-----F-ERWIEEEEVITSFS 448 (556)
Q Consensus 383 i~vwd~~~~~---~~~~~~~~~~~-v~~v~~s~~g~~l~~~~~---d-~~I~i~d~~~~-----~-~~~~~~~~~i~~v~ 448 (556)
|+.|.+.+.. ...+....... ...+..++|+++++..+. + ..+.+.|+... . ..+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 7888886532 12222222223 678889999998775432 2 45899999875 2 33344333443333
Q ss_pred EcCCCCEEEEEE---cCCeEEEEEcCCCCc--ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC--cEEEEEcC-CCc
Q 008717 449 LSKDNKYLLVNL---INQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--QNVPEILL-SES 520 (556)
Q Consensus 449 ~sp~~~~l~~~~---~dg~I~lwd~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg--~v~iwd~~-~~~ 520 (556)
-+..+.+++... .++.|.-.++.+... ....+..+...+....+.. ..+.+++....++ .|+++++. +..
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE
Confidence 233444444332 235677778776621 1225555655433332322 1344556666665 58888998 544
Q ss_pred eee
Q 008717 521 VAA 523 (556)
Q Consensus 521 ~~~ 523 (556)
...
T Consensus 362 ~~~ 364 (414)
T PF02897_consen 362 SRE 364 (414)
T ss_dssp EEE
T ss_pred Eee
Confidence 433
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00028 Score=44.24 Aligned_cols=38 Identities=42% Similarity=0.716 Sum_probs=34.1
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd 300 (556)
++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.014 Score=62.27 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCeEEEEeCCCCCEEEEEe------CCC--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC---------
Q 008717 318 KPVFTVSWSPNDHQLLTCG------QEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD--------- 380 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------- 380 (556)
..+...+.+|||+.++... .|+ .|.+++. .+.. ..+... ...+.-.|+|||..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887765 243 4555554 2333 333222 237788999998877776432
Q ss_pred ---CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE---EECCCCeeee------ee-cCCceEEE
Q 008717 381 ---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL---LDREANFERW------IE-EEEVITSF 447 (556)
Q Consensus 381 ---g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i---~d~~~~~~~~------~~-~~~~i~~v 447 (556)
+.+.+.++++..... ...+.|..+.|+|||..++... ++.|.+ -....+...+ .. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 234444554444333 1123799999999999988766 477777 4434443222 12 23346889
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 448 SLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 448 ~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
.|.+++.++ ++..++...+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEe
Confidence 999999854 65555555555543
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=0.017 Score=61.72 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=129.6
Q ss_pred cCCCEEEEEeCC------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-C-----cEEEEECCCC
Q 008717 282 HDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E-----AIRRWDVNSG 349 (556)
Q Consensus 282 p~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-----~i~iwd~~~~ 349 (556)
..+..++.|+.+ ..+..+|..++ .+.....+... ..-.+++.. ++...++||.| | ++..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 345566677666 35778888754 23333333322 223344443 45778888888 3 5788898877
Q ss_pred cEEEE--EecCCCceEEEEEecCCCeEEEEeCCC-----cEEEEECCCCeEEEeecccCCCeeEEE-EccCCCEEEEEeC
Q 008717 350 ECLHV--YEKTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMA-ITDDGKRIISICR 421 (556)
Q Consensus 350 ~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~v~-~s~~g~~l~~~~~ 421 (556)
+.... +........ ++. -+|...++|+.|| +|-.||.++.+-........ .....+ ..-+|...++|+.
T Consensus 360 ~W~~~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred ceeccCCccCccccce-eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCc
Confidence 64431 111222111 121 2788889999887 47788887765444333322 222222 2336777778775
Q ss_pred C------CeEEEEECCCCeeeeee-c---CCceEEEEEcCCCCEEEEEEcCC-----eEEEEEcCCCC-cceeEEeCccC
Q 008717 422 E------AAILLLDREANFERWIE-E---EEVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDP-KLVSRYKGHKR 485 (556)
Q Consensus 422 d------~~I~i~d~~~~~~~~~~-~---~~~i~~v~~sp~~~~l~~~~~dg-----~I~lwd~~~~~-~~~~~~~~~~~ 485 (556)
+ .++..||..++.-.... . ..... ++. -++...++|+.|+ +|..||..+.. ..+........
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 5 45889999988722221 1 11122 222 2577778888776 37788887651 12221222222
Q ss_pred ceeEEEEeecCCCCcEEEEeeCCC-----cEEEEEcCCCceeeeec
Q 008717 486 ARFVIRSCFGGFEQAFIASGSEDS-----QNVPEILLSESVAAAAS 526 (556)
Q Consensus 486 ~~~~i~~~~~s~~~~~l~sgs~dg-----~v~iwd~~~~~~~~~~~ 526 (556)
. ..++ .-++...+.|+.|| +|-.||..+.+-.....
T Consensus 515 ~---~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 515 A---VGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred c---ccEE--EECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 2 2122 23677788888887 57778887776544443
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0007 Score=69.02 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
...|..+.|+|.-..||.+..+|.|.+..++ .+.+.++..++..++ +++|.|||+.+++|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999987 777888887777777 99999999999999999999999998654332
Q ss_pred e-ecccCCCeeEEEEcc
Q 008717 396 W-KGQKTLRISDMAITD 411 (556)
Q Consensus 396 ~-~~~~~~~v~~v~~s~ 411 (556)
- .......|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 2 222223677777764
No 377
>PRK10115 protease 2; Provisional
Probab=97.41 E-value=0.31 Score=53.57 Aligned_cols=239 Identities=9% Similarity=0.006 Sum_probs=123.8
Q ss_pred cEEEEEEccCCCEEEEEeC-----CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC------CcEE
Q 008717 274 EVWFLQFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIR 342 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~ 342 (556)
.+..+.|||||++|+.+.. ...|++.|+.++.. ....+.+ .-..++|++|++.|+.+..+ ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4677899999999887532 23477888875421 1112221 11469999999877665442 3688
Q ss_pred EEECCCC--cEEEEEecCCCceEEEEEec-CCCeEEEEeC---CCcEEEEECC--CCeEEEeecccCCCeeEEEEccCCC
Q 008717 343 RWDVNSG--ECLHVYEKTGVGLISCGWFL-DGGGIFAGMT---DKSICLWDLD--GRELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 343 iwd~~~~--~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~---dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
.+++.++ +-...+........-..+.+ ++++++..+. ++.+.+++.. .................+. +. +.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 280 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QH 280 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CC
Confidence 8899888 44445554433333233434 7887766543 4578888853 2222222222222233332 22 33
Q ss_pred EEEEEeCC----CeEEEEECCC-Ce-eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe-CccC
Q 008717 415 RIISICRE----AAILLLDREA-NF-ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKR 485 (556)
Q Consensus 415 ~l~~~~~d----~~I~i~d~~~-~~-~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~-~~~~ 485 (556)
.+...+.. ..|...++.. .. ..+..+ ...|..+.++ .+.++++...++.-+++-+......+..+. ....
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 359 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPA 359 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCc
Confidence 33333322 2355555552 33 445555 2468888887 334455555566644444332112344433 2221
Q ss_pred ceeEEEEeecCCCC-cEEEEeeC---CCcEEEEEcCCCce
Q 008717 486 ARFVIRSCFGGFEQ-AFIASGSE---DSQNVPEILLSESV 521 (556)
Q Consensus 486 ~~~~i~~~~~s~~~-~~l~sgs~---dg~v~iwd~~~~~~ 521 (556)
.+..+.... .+++ .++++.+. -+.++.+|+.+++.
T Consensus 360 ~~~~~~~~~-~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~ 398 (686)
T PRK10115 360 YVTWIAYNP-EPETSRLRYGYSSMTTPDTLFELDMDTGER 398 (686)
T ss_pred eEeeecccC-CCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence 111111111 2333 34444433 56788899887654
No 378
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.40 E-value=0.015 Score=61.21 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=114.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCC------ceE--EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc
Q 008717 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV------GLI--SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~--~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 400 (556)
+..++.++.++.+.-.|..+|+.+-.+..... .+. .+... ++..++.++.++.|+-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45677778889999999999988766653322 010 11111 2268888889999999999876654333222
Q ss_pred CCC-----e-eEEEEccCCCEEEEEe---------CCCeEEEEECCCCeeeeee---cC-------------------Cc
Q 008717 401 TLR-----I-SDMAITDDGKRIISIC---------REAAILLLDREANFERWIE---EE-------------------EV 443 (556)
Q Consensus 401 ~~~-----v-~~v~~s~~g~~l~~~~---------~d~~I~i~d~~~~~~~~~~---~~-------------------~~ 443 (556)
... + ....+. +..++.++ .++.|..+|..+++..... .. ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 110 1 111222 23455543 3678999999998822221 11 00
Q ss_pred e-EEEEEcCCCCEEEEEEcCC------------------eEEEEEcCCCCcceeEEeCccCceeEEEE----ee--c-CC
Q 008717 444 I-TSFSLSKDNKYLLVNLINQ------------------EIHLWSIESDPKLVSRYKGHKRARFVIRS----CF--G-GF 497 (556)
Q Consensus 444 i-~~v~~sp~~~~l~~~~~dg------------------~I~lwd~~~~~~~~~~~~~~~~~~~~i~~----~~--~-s~ 497 (556)
+ .+.++++.+..+++++.++ .|.-+|..++ +.+-.++.-....+.... .. . .-
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1345565667788887665 7999999998 777665422111000000 00 0 01
Q ss_pred CCc---EEEEeeCCCcEEEEEcCCCceeee
Q 008717 498 EQA---FIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 498 ~~~---~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
++. .++.++.+|.++..|..+|+++-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 333 688889999999999999987654
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.35 E-value=0.17 Score=53.75 Aligned_cols=236 Identities=12% Similarity=0.096 Sum_probs=131.8
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC---CCCEEEEEe------CCCcEEEEECCCCcEEEE
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCG------QEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~ 354 (556)
+..++.++.|+.+.-.|..++... -......+... ..+.-+| ++ .++.+. .+|.|..+|.++|+.+-.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~-W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVV-WSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEE-eeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 345777788999999998876422 11111111110 0111122 34 455543 268999999999987765
Q ss_pred EecCC-------------------------------CceE-EEEEecCCCeEEEEeCC-----C-----------cEEEE
Q 008717 355 YEKTG-------------------------------VGLI-SCGWFLDGGGIFAGMTD-----K-----------SICLW 386 (556)
Q Consensus 355 ~~~~~-------------------------------~~v~-~i~~~~~~~~l~~~~~d-----g-----------~i~vw 386 (556)
+..-. ..++ .+.+.|....++.+..+ + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 43211 1111 23555656666665522 2 56667
Q ss_pred ECCCCeEEEeecccCCCe---------eEEEEccCCC---EEEEEeCCCeEEEEECCCCeee----ee---------e-c
Q 008717 387 DLDGRELESWKGQKTLRI---------SDMAITDDGK---RIISICREAAILLLDREANFER----WI---------E-E 440 (556)
Q Consensus 387 d~~~~~~~~~~~~~~~~v---------~~v~~s~~g~---~l~~~~~d~~I~i~d~~~~~~~----~~---------~-~ 440 (556)
|+++++++-......+.+ .-+.+..+|+ .++.++.+|.+++.|..+++.. +. . .
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 888777653332211111 2223334666 6778999999999999988721 00 0 0
Q ss_pred C-Cce----------------------------EEEEEcCCCCEEEEEEcC-----------------------------
Q 008717 441 E-EVI----------------------------TSFSLSKDNKYLLVNLIN----------------------------- 462 (556)
Q Consensus 441 ~-~~i----------------------------~~v~~sp~~~~l~~~~~d----------------------------- 462 (556)
. .++ ..++++|+..++++...+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 000 125677766666554433
Q ss_pred ----CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecC
Q 008717 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 463 ----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 527 (556)
|.|.-+|+.++ +..-+........- ... ...+.+++.++.||.++.+|..+|+++-...-
T Consensus 437 ~~~~g~l~AiD~~tG-k~~W~~~~~~p~~~---~~l-~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 437 DDHMGSLIAWDPITG-KIVWEHKEDFPLWG---GVL-ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCceeEEEEeCCCC-ceeeEecCCCCCCC---cce-EECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 34677777777 55554432221100 101 12455777888899999999999998765543
No 380
>PHA03098 kelch-like protein; Provisional
Probab=97.35 E-value=0.08 Score=56.67 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=92.4
Q ss_pred cCCCEEEEEeCCC------cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCc
Q 008717 282 HDGKYLASSSKDQ------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE 350 (556)
Q Consensus 282 p~g~~las~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 350 (556)
.++..++.|+.++ .+..||..++ .+.....+.........+.+ ++..++.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556666776542 4667777653 22222212211122222222 56777777765 357788887765
Q ss_pred EEEE--EecCCCceEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 351 CLHV--YEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 351 ~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
.... +...... .+++ .-++..++.|+.+ ..+..||..+..-..............+...++..++.|+.+
T Consensus 370 W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 4321 1111111 1122 2366777777732 358889987655433322211111112233456666666543
Q ss_pred --------CeEEEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008717 423 --------AAILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (556)
Q Consensus 423 --------~~I~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~ 473 (556)
..+.+||..+.+ ...... ......+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 238899998877 222111 111111222 56667777654 35777877654
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.23 E-value=0.25 Score=49.50 Aligned_cols=211 Identities=15% Similarity=0.195 Sum_probs=99.6
Q ss_pred ceeEEec-ccC-CcEEEEEEc-----------cCCCEEEEEe-CCCcEEEEEeecCC-eeEEEEEecC---CC----CCe
Q 008717 263 QTLQILE-AHS-DEVWFLQFS-----------HDGKYLASSS-KDQSAIIWEVKEDG-QVSLKHRLSG---HR----KPV 320 (556)
Q Consensus 263 ~~~~~l~-~h~-~~V~~~~~s-----------p~g~~las~s-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~v 320 (556)
+.++.+. .+. ++....-|+ .+.++|+..+ .++.|+|.|+.++. ..++.+.+.. +. ..-
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P 132 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP 132 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC
Confidence 4555543 332 455555565 2456777765 77899999998543 2344444432 11 112
Q ss_pred EEEEeCCCCCEEEEEeC--C----CcEEEEECCCCcEEEEEecC---CCceEEEEEecCCCeEEEEeC------------
Q 008717 321 FTVSWSPNDHQLLTCGQ--E----EAIRRWDVNSGECLHVYEKT---GVGLISCGWFLDGGGIFAGMT------------ 379 (556)
Q Consensus 321 ~~l~~s~~~~~l~s~~~--d----g~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~------------ 379 (556)
..+-.-|+|+.++++-. + |-+.+.|-++.+.....+.. ...-+.+-|.|..+.++++..
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 22333478888887632 2 45888888887777766543 233467778888888887642
Q ss_pred --------CCcEEEEECCCCeEEEeecccC--CCeeEEEEccC--CCE-EEEEeCCCeEEEE-ECCCCe---eeeeec--
Q 008717 380 --------DKSICLWDLDGRELESWKGQKT--LRISDMAITDD--GKR-IISICREAAILLL-DREANF---ERWIEE-- 440 (556)
Q Consensus 380 --------dg~i~vwd~~~~~~~~~~~~~~--~~v~~v~~s~~--g~~-l~~~~~d~~I~i~-d~~~~~---~~~~~~-- 440 (556)
..++.+||+.++++.+...... ..+..+.|..+ ..+ ++.+.-.++|..| ....+. ...+.-
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 3479999999887766554332 13566777554 443 3333334445444 334443 111110
Q ss_pred ------------------CCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCC
Q 008717 441 ------------------EEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESD 473 (556)
Q Consensus 441 ------------------~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~ 473 (556)
..-|+.+.+|.|.++|.+++. +|.|+.||+...
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 345799999999999988765 799999999865
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.22 E-value=0.035 Score=44.40 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=67.4
Q ss_pred eEEEEEec---C-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeee
Q 008717 362 LISCGWFL---D-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW 437 (556)
Q Consensus 362 v~~i~~~~---~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~ 437 (556)
|+++++.. | .+.|++|+.|..|++|+-+ ..+..+.... .|.+++-... ..++.+..+|+|-+|+-....-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~--~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETD--KVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEeccc--ceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence 55666554 2 2679999999999999854 2333333333 7888887776 568889999999999875544222
Q ss_pred eecCCceEEEEEcC---CC-CEEEEEEcCCeEE
Q 008717 438 IEEEEVITSFSLSK---DN-KYLLVNLINQEIH 466 (556)
Q Consensus 438 ~~~~~~i~~v~~sp---~~-~~l~~~~~dg~I~ 466 (556)
. ....++++.+.. || .-|++|-.+|.|-
T Consensus 78 K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 334466665544 33 4688888888764
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.20 E-value=0.035 Score=44.44 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=67.7
Q ss_pred eEEEEeCC---CC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 320 VFTVSWSP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 320 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|++++-... ..|+.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-eeee
Confidence 55666544 32 68999999999999984 466666664 445777776644 6799999999999998533 2222
Q ss_pred eecccCCCeeEEEEcc---CC-CEEEEEeCCCeEE
Q 008717 396 WKGQKTLRISDMAITD---DG-KRIISICREAAIL 426 (556)
Q Consensus 396 ~~~~~~~~v~~v~~s~---~g-~~l~~~~~d~~I~ 426 (556)
.... ..+.++++.. || .-|++|-.+|.|-
T Consensus 77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2333 3577766554 23 2588888888764
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.11 Score=48.85 Aligned_cols=167 Identities=10% Similarity=0.139 Sum_probs=112.0
Q ss_pred ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 008717 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (556)
Q Consensus 313 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~ 391 (556)
+.+-...+.++.|+|+.+.|++......-.+|=..+|+.++++.-. -...-.+.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999999999888888888877889998887632 233456788877777777778888888877532
Q ss_pred -eEE-----Eee----cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeee-----eec-------CCceEEEEE
Q 008717 392 -ELE-----SWK----GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW-----IEE-------EEVITSFSL 449 (556)
Q Consensus 392 -~~~-----~~~----~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~-----~~~-------~~~i~~v~~ 449 (556)
.+. .+. .........++|+|....+..+-...-+.||......... ..+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 111 111 1113367899999999988888887777777765433111 111 134677888
Q ss_pred cCC-CCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 450 SKD-NKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 450 sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
++. +.+|+-+.+++.+.-.|.... ++..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~--~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE--VIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC--eeeeEE
Confidence 874 455666666777777776543 444443
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.033 Score=51.81 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=113.2
Q ss_pred EEccCCCEEEEEeC-----CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC------C---------
Q 008717 279 QFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ------E--------- 338 (556)
Q Consensus 279 ~~sp~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d--------- 338 (556)
.|||||.+|...-+ -|.|-|||.. ..+..+-.+..|.-.-..+.|.+||+.++.+.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 59999999987643 3779999998 445677778888888889999999999887643 1
Q ss_pred ---CcEEEEECCCCcEEEEEe----cCCCceEEEEEecCCCeEEEEeCCCcE-----EE-EECCCCeEEEeecc------
Q 008717 339 ---EAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKSI-----CL-WDLDGRELESWKGQ------ 399 (556)
Q Consensus 339 ---g~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~i-----~v-wd~~~~~~~~~~~~------ 399 (556)
-++.+.|..+|+.+.+.. .+.-.|..++..+||...+-+-..|.- .+ .-..++.+..+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 134455555665443322 234557777777777655554332210 00 01112222221111
Q ss_pred cCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 400 KTLRISDMAITDDGKRIISICR-EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~-d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
-...|-+++.+.+..+++..+. .+...+||..++.......-.....++-...| +++.+.+|.+.++.-
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~g--f~vssg~G~~~~~s~ 347 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGG--FAVSSGQGRIIFYSR 347 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCc--eEEecCCceEEeccc
Confidence 0125778888876666665554 45578999999884443333333444443333 555666888887743
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.096 Score=51.08 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=108.0
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe-cCC-CCCeEEEEeCCCCCEEEEEeC-----------CCcE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGH-RKPVFTVSWSPNDHQLLTCGQ-----------EEAI 341 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~h-~~~v~~l~~s~~~~~l~s~~~-----------dg~i 341 (556)
+.++..-..+..|+++. .-+.+++..++......... .+. ....+.+...|+|.+.++... -|.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 34444444444555553 24666777544331222221 111 234567788899887766444 1334
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-CcEEEEECCC-------CeEEEeecccCCCeeEEEEccCC
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-KSICLWDLDG-------RELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~vwd~~~-------~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
+.+|. .+..++.+..+-..-+.++|+||++.++.+... +.|.-|++.. ...........+..-.++...+|
T Consensus 146 yr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 146 YRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 44443 566666666655556789999999888877654 7788887751 11122222334567788889999
Q ss_pred CEEEEEeCCC-eEEEEECCCCeeeee-ecCCceEEEEEc-CCCCEEEEEE
Q 008717 414 KRIISICREA-AILLLDREANFERWI-EEEEVITSFSLS-KDNKYLLVNL 460 (556)
Q Consensus 414 ~~l~~~~~d~-~I~i~d~~~~~~~~~-~~~~~i~~v~~s-p~~~~l~~~~ 460 (556)
.+.+++..+| .|.+|+........+ -....+++++|- |+.+.|++.+
T Consensus 225 ~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 8876555554 899999994443333 333777888874 3445555444
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.15 E-value=0.0013 Score=40.97 Aligned_cols=37 Identities=35% Similarity=0.713 Sum_probs=32.9
Q ss_pred EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4456678889999999999999999999999999996
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.091 Score=49.01 Aligned_cols=230 Identities=15% Similarity=0.152 Sum_probs=128.5
Q ss_pred EEEEccC-CCEEEEEeCCCc-EEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCCC
Q 008717 277 FLQFSHD-GKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSG 349 (556)
Q Consensus 277 ~~~~sp~-g~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 349 (556)
.++|+|. ..-++.+-.-|+ ..++|.........+....+ ..-.-.=.|||||.+|+..-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 4677774 345666655555 46788775543322211110 0111123699999999987554 67999999754
Q ss_pred -cEEEEEecCCCceEEEEEecCCCeEEEEeC------C-C-----------cEEEEECCCCeEEEee--c--ccCCCeeE
Q 008717 350 -ECLHVYEKTGVGLISCGWFLDGGGIFAGMT------D-K-----------SICLWDLDGRELESWK--G--QKTLRISD 406 (556)
Q Consensus 350 -~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------d-g-----------~i~vwd~~~~~~~~~~--~--~~~~~v~~ 406 (556)
+.+..+..|.-....+.|.+||+.++.+.. | | ++.+.|..++.+.... . .+...|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 456677778777888999999999988653 0 1 2223332222221111 1 12226788
Q ss_pred EEEccCCCEEEEEeCCCe-----EEEEECCCCe-eee--------eecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 008717 407 MAITDDGKRIISICREAA-----ILLLDREANF-ERW--------IEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE 471 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~~-----I~i~d~~~~~-~~~--------~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~ 471 (556)
++..+||..++.+-..|. -.+=-...++ ..+ ......|-+++.+.+..+++..+- .+...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888875554433221 0010111111 111 122455778888876666666554 4568899999
Q ss_pred CCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
++ ..+..-.-.... . + .+...-++..+.+|.+.++.
T Consensus 311 tG-~vv~~a~l~daa--G--v---a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TG-AVVSEAALPDAA--G--V---AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CC-cEEecccccccc--c--c---eeccCceEEecCCceEEecc
Confidence 98 555443322211 1 1 12333355667788888774
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.12 E-value=0.12 Score=46.89 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=118.1
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC---CEEEEEeCCCcEEEEECCC--CcEEEEEe---
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQEEAIRRWDVNS--GECLHVYE--- 356 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~--~~~~~~~~--- 356 (556)
.++..--..|.|.-||...+.- ....+.+. ++.++.+--.+ .+.+.++..-.|.-||... ....+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v--~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKV--YRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhhe--EEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3444444556777798875321 11222222 13333332222 3444444444455677432 22233321
Q ss_pred --cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC--------CCeeEEEEccCCCEEE-EEeCCCeE
Q 008717 357 --KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT--------LRISDMAITDDGKRII-SICREAAI 425 (556)
Q Consensus 357 --~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~-~~~~d~~I 425 (556)
......+.-..+|+|++++-...|-.- .+....+.+..+...|. .--+.++|+.+.+.+. +-+.+-.|
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred chHHhcccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 113455666788999984433222111 22222344444443332 1235788888877655 44556678
Q ss_pred EEEE--CCCCe----eeeee-------cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEE
Q 008717 426 LLLD--REANF----ERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (556)
Q Consensus 426 ~i~d--~~~~~----~~~~~-------~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (556)
.-|| ..++. ...+. .....-.+++..+|.+.++.-+.++|...|..++ +.+.+++-....+++ +
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qits--c 259 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITS--C 259 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEE--E
Confidence 7777 55543 11111 1122345666778998888888999999999999 899999888777555 8
Q ss_pred eecCCCCcEEEEee
Q 008717 493 CFGGFEQAFIASGS 506 (556)
Q Consensus 493 ~~~s~~~~~l~sgs 506 (556)
||..++-..+++..
T Consensus 260 cFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 260 CFGGKNLDILYVTT 273 (310)
T ss_pred EecCCCccEEEEEe
Confidence 99888666555443
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.11 E-value=0.3 Score=47.39 Aligned_cols=230 Identities=15% Similarity=0.121 Sum_probs=106.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE-E
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-L 352 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~ 352 (556)
...++.|..+ ..+++| ..+ +.+...+.+.....+..-..-++....+....++ ....++..|.|..=. +.|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCee
Confidence 3566777643 344444 344 3333333343343332111222333344433333 333334445543322 33432 3
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 353 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
.......+.+..+.-++||.+++++..-....-||--...-.........+|.+|.|.|++...+. ...|.|++=+...
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC
Confidence 334445677888888999998888876555667776432222222333448999999999876554 4888998887332
Q ss_pred Ceeee----ee---cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-ccCceeEEEEeecCCCCcEEEE
Q 008717 433 NFERW----IE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 433 ~~~~~----~~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s 504 (556)
..... .. ....+..++|.+++...++|+ .|.+ +.....+ +.-++... ..-+-...++.|.+++.- +.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~g--f~ 291 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDKG--FV 291 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTEE--EE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCce--EE
Confidence 22111 11 223478999999988777766 5544 3344445 44444432 222223455777555433 33
Q ss_pred eeCCCcEEEE
Q 008717 505 GSEDSQNVPE 514 (556)
Q Consensus 505 gs~dg~v~iw 514 (556)
-+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 4678877655
No 391
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.019 Score=61.45 Aligned_cols=184 Identities=10% Similarity=0.048 Sum_probs=98.1
Q ss_pred CCCEEEEEeCC------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC-----cEEEEECCCCcE
Q 008717 283 DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGEC 351 (556)
Q Consensus 283 ~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 351 (556)
++...+.||.+ ..+..||..++ .+.....+.........+. -+|+..+.||.++ ++..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56666777653 34677887654 2222222211111122222 2577777787754 488899887654
Q ss_pred EE--EEecCCCceEEEEEecCCCeEEEEeCCC-----------------------cEEEEECCCCeEEEeecccCCCeeE
Q 008717 352 LH--VYEKTGVGLISCGWFLDGGGIFAGMTDK-----------------------SICLWDLDGRELESWKGQKTLRISD 406 (556)
Q Consensus 352 ~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~v~~ 406 (556)
.. .+.........+ .-+|...+.|+.++ .+..||.++..-.............
T Consensus 380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 32 111111111112 22677777787542 4777888765543333222212222
Q ss_pred EEEccCCCEEEEEeCC------CeEEEEECCC-Ce-eeeeec---CCceEEEEEcCCCCEEEEEEcCC--eEEEEEcCCC
Q 008717 407 MAITDDGKRIISICRE------AAILLLDREA-NF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESD 473 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d------~~I~i~d~~~-~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg--~I~lwd~~~~ 473 (556)
-+..-+|+..+.|+.+ ..+..||..+ .+ ...... ......+.+ +|+..++|+.++ .+..||..+.
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 2233456777777654 2477899998 55 222211 111222222 688888998888 6788888775
No 392
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.005 Score=59.76 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHhhhcCcccC-C------HHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHH
Q 008717 63 KSEFIKIITRALYSLGYDKSGALLEEESGIPMH-S------SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFL 135 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~-~------~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~ 135 (556)
.+.++.+|..|+...|..+.+..|-+|+|.... . .++.++.+++..|+-.-|++.+..-.-.-......+.|.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~ 195 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHH
Confidence 334699999999999999999999999998864 2 258889999999999999988876431111223467799
Q ss_pred HHHHHHHHHHhcCChH--HHHHHHhhcccccccCh
Q 008717 136 ILEQKFLELLRRDKVS--AALNSLRSEIVPLQINM 168 (556)
Q Consensus 136 i~~q~~~ell~~~~~~--~a~~~L~~~l~pl~~~~ 168 (556)
+..+.|++++..|... +|++..|+.++|+..+.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 9999999999998777 99999999999997644
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.96 E-value=0.49 Score=51.65 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=135.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
.|.-..|--|..+|.++..||.+.-+.+... +...-.+...-...|+.--.|+..++.-+.+..|.-..+|.-+ ++.+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEE
Confidence 4555566667889999999999987766532 1222222223345667777787766666666677777777653 3332
Q ss_pred -EEEecCCCceE-EEEEecC--CCeEEEEeCCCcEEEEECCC---CeEEEeecccCCCeeEEEEccCCCEEEEEeCC---
Q 008717 353 -HVYEKTGVGLI-SCGWFLD--GGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICRE--- 422 (556)
Q Consensus 353 -~~~~~~~~~v~-~i~~~~~--~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d--- 422 (556)
..+... .+. -+.|+.+ ...++++.. +.+.+..++. -.+++...+. .+..+++.+....+.+.+..
T Consensus 664 ~spls~k--ev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~--~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 664 YSPLSLK--EVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGE--SPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred EeccchH--HhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCC--ChhheEecccceEEEEEeccccc
Confidence 222111 111 1223321 233444443 5577766642 2233322222 57778887754444443321
Q ss_pred -----------CeEEEEECCCCe-eee--eec---CCceEEEEEcCC-CCEEEEEEc----------CCeEEEEEcCCCC
Q 008717 423 -----------AAILLLDREANF-ERW--IEE---EEVITSFSLSKD-NKYLLVNLI----------NQEIHLWSIESDP 474 (556)
Q Consensus 423 -----------~~I~i~d~~~~~-~~~--~~~---~~~i~~v~~sp~-~~~l~~~~~----------dg~I~lwd~~~~~ 474 (556)
..++++|-.+.+ ... ... ...|.++.|..| +.++++|+. .|.|.+|.....
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~- 817 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL- 817 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-
Confidence 237777777665 111 111 223555668887 788888863 578999988774
Q ss_pred cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecC
Q 008717 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 527 (556)
..+.....+.-...+...+- -+|++||+- ...|++|++.+++....-.+
T Consensus 818 ~~L~~v~e~~v~Gav~aL~~--fngkllA~I--n~~vrLye~t~~~eLr~e~~ 866 (1096)
T KOG1897|consen 818 NSLELVAETVVKGAVYALVE--FNGKLLAGI--NQSVRLYEWTTERELRIECN 866 (1096)
T ss_pred Cceeeeeeeeeccceeehhh--hCCeEEEec--CcEEEEEEccccceehhhhc
Confidence 44554444432222222332 278888744 56899999998855444333
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0029 Score=68.52 Aligned_cols=102 Identities=16% Similarity=0.288 Sum_probs=77.6
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
.+..++.|+..|.+-..|+..+ +.....=..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4567888999999998888732 22223323446799999999999999999999999999999999999888776655
Q ss_pred EEE---EEecCCCeEEEEeCCCcEEEEEC
Q 008717 363 ISC---GWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 363 ~~i---~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
+.+ .+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 554 44556667888887776 4544
No 395
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.93 E-value=0.5 Score=46.97 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=113.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe----cCCCCCeEEEEeCCC---CCEEEEEeC-C-------
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----SGHRKPVFTVSWSPN---DHQLLTCGQ-E------- 338 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s~~~-d------- 338 (556)
..+.|+|.|||+++++ ...|.|++++ ..+.....+..+ .........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4688999999987775 5699999998 322211222222 234557899999994 334433332 1
Q ss_pred -CcEEEEECCCC--c-----EE-EEEec---CCCceEEEEEecCCCeEEEEeCCC-------------cEEEEECCCCe-
Q 008717 339 -EAIRRWDVNSG--E-----CL-HVYEK---TGVGLISCGWFLDGGGIFAGMTDK-------------SICLWDLDGRE- 392 (556)
Q Consensus 339 -g~i~iwd~~~~--~-----~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg-------------~i~vwd~~~~~- 392 (556)
..|.-|....+ . .+ ..+.. .......+.|.|||.+.++.+..+ .|.-.+..+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23555554433 1 11 11222 234456799999997766655432 33333433220
Q ss_pred ------------EEEeecccCCCeeEEEEccC-CCEEEEE-eCCCeEEEEECCCCe------------------------
Q 008717 393 ------------LESWKGQKTLRISDMAITDD-GKRIISI-CREAAILLLDREANF------------------------ 434 (556)
Q Consensus 393 ------------~~~~~~~~~~~v~~v~~s~~-g~~l~~~-~~d~~I~i~d~~~~~------------------------ 434 (556)
...+.... .....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 01111111 14678999998 6544432 222222222222111
Q ss_pred ------eeeeecCCceEEEEEcC-------CCCEEEEEEcCCeEEEEEcCCCCcceeE--Ee-CccCceeEEEEeecCCC
Q 008717 435 ------ERWIEEEEVITSFSLSK-------DNKYLLVNLINQEIHLWSIESDPKLVSR--YK-GHKRARFVIRSCFGGFE 498 (556)
Q Consensus 435 ------~~~~~~~~~i~~v~~sp-------~~~~l~~~~~dg~I~lwd~~~~~~~~~~--~~-~~~~~~~~i~~~~~s~~ 498 (556)
.....+...++.+.|.. .|.++++.-..+.|....+......... +. ..... .+.+.+ .||
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r--~~~v~~-~pD 316 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGR--PRDVAQ-GPD 316 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS---EEEEEE-ETT
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCC--ceEEEE-cCC
Confidence 11122334566677764 3455655555667877777644222111 11 11112 234555 788
Q ss_pred CcEEEEeeCCCcEE
Q 008717 499 QAFIASGSEDSQNV 512 (556)
Q Consensus 499 ~~~l~sgs~dg~v~ 512 (556)
|.+.++-+.+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 88777777777764
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.0053 Score=66.55 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=77.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCcee
Q 008717 412 DGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~ 488 (556)
.+..++.|+..|.|...|....- ..-....++|++++|+.+|+.++.|-.+|.|.+||+..+ +.++.+..|..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 45578888899999999987753 233345789999999999999999999999999999998 78888877766543
Q ss_pred E-EEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 489 V-IRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 489 ~-i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
. +.+.+ ..++..+.++..-|. +|.+
T Consensus 177 ~vi~v~~-t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGR-TSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEE-eCCCcEEEEccCCCc--eEEE
Confidence 3 33444 445667888877776 5554
No 397
>PHA03098 kelch-like protein; Provisional
Probab=96.73 E-value=0.093 Score=56.15 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=95.0
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEec--CCCceEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEE
Q 008717 328 NDHQLLTCGQEE------AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELE 394 (556)
Q Consensus 328 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 394 (556)
++..++.||.++ .+..||..+++....-.. ..... +++ .-++..++.|+.+ ..+..||..++.-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776542 577888877765322111 11111 222 2367777888765 25778888765443
Q ss_pred EeecccCCCeeEEEEccCCCEEEEEeCC------CeEEEEECCCCe-eeeeecCCc--eEEEEEcCCCCEEEEEEcC---
Q 008717 395 SWKGQKTLRISDMAITDDGKRIISICRE------AAILLLDREANF-ERWIEEEEV--ITSFSLSKDNKYLLVNLIN--- 462 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d------~~I~i~d~~~~~-~~~~~~~~~--i~~v~~sp~~~~l~~~~~d--- 462 (556)
.............+..-+++..+.|+.+ +.+..||..+.+ ........+ -.++ ...++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCC
Confidence 3322211111111223356667777632 458899998876 222111111 1122 22356666666543
Q ss_pred -----CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC-----CcEEEEEcCCCce
Q 008717 463 -----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQNVPEILLSESV 521 (556)
Q Consensus 463 -----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d-----g~v~iwd~~~~~~ 521 (556)
..+.+||..+. + -..+.....+.....++. .++++++.|+.+ +.|.+||..+..-
T Consensus 451 ~~~~~~~v~~yd~~~~-~-W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 451 NIKVYNIVESYNPVTN-K-WTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCcccceEEEecCCCC-c-eeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 23888998765 2 111211111111111222 267777777764 4688888887654
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.0029 Score=56.83 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=80.2
Q ss_pred EEEEeCCCcEEEEECCCCeEE--EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCce-EEE
Q 008717 374 IFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVI-TSF 447 (556)
Q Consensus 374 l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i-~~v 447 (556)
+...+.||.|.-++++..++. ....... . ...-.-+..+++|+.+|.|.+|.....- .........| +.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e-~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDE-G---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhc-c---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 444566777777777543221 1111111 1 1112234679999999999999877322 1112222222 223
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-CceeEEEEeecCCCCcEEEEe--eCCCcEEEEEcCC
Q 008717 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASG--SEDSQNVPEILLS 518 (556)
Q Consensus 448 ~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~sg--s~dg~v~iwd~~~ 518 (556)
.--.++.+..+++.||.|+.|++.-. +.+.....|. .+... ... ...+++|+++ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~--~iv-v~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEE--LIV-VGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcce--eEE-ecCCceEEeeccccchhhhhcchhh
Confidence 33345668899999999999999877 6666665565 22211 122 3355667777 7788888887753
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.63 E-value=0.14 Score=54.68 Aligned_cols=190 Identities=11% Similarity=0.014 Sum_probs=104.7
Q ss_pred CCEEEEEeCC------CcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCC-C-----cEEEEECCCCeEEE
Q 008717 329 DHQLLTCGQE------EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTD-K-----SICLWDLDGRELES 395 (556)
Q Consensus 329 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d-g-----~i~vwd~~~~~~~~ 395 (556)
+..++.||.+ ..+..+|..++.....-.-. ...-.+++.. ++...++|+.| | .+..||.++++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3344455544 35778888777543322211 1223344444 56788889988 3 57788887765333
Q ss_pred eecccCCCeeEEEEccCCCEEEEEeCCCe-----EEEEECCCCe-eeeeecCCceEEEEE-cCCCCEEEEEEcCC-----
Q 008717 396 WKGQKTLRISDMAITDDGKRIISICREAA-----ILLLDREANF-ERWIEEEEVITSFSL-SKDNKYLLVNLINQ----- 463 (556)
Q Consensus 396 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-----I~i~d~~~~~-~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg----- 463 (556)
...-...+...-...-+|...++|+.||. |-.||..+.+ ...-.......+.+. .-+|+..++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 22222211111122236778888988864 8889999887 222222222222222 22677778887554
Q ss_pred -eEEEEEcCCC-CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC-----cEEEEEcCCCceeee
Q 008717 464 -EIHLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QNVPEILLSESVAAA 524 (556)
Q Consensus 464 -~I~lwd~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg-----~v~iwd~~~~~~~~~ 524 (556)
++..||..++ ...+..+..... ...++ .-++.+.+.|+.|+ +|..||..+.+-...
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~---~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRS---GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccc---cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 4778887765 111111111111 11122 23778888888876 377788888776544
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.048 Score=54.99 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=95.5
Q ss_pred CCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC-------EEEEEeCCCcEEEEECCCC-c-EE
Q 008717 283 DGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-------QLLTCGQEEAIRRWDVNSG-E-CL 352 (556)
Q Consensus 283 ~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~~~dg~i~iwd~~~~-~-~~ 352 (556)
+.++|+ ++.....++--|++.+ +.+....-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 344444 4455566777788776 56666666666 77777777643 2244566788999998632 2 22
Q ss_pred EEEecC----CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 353 HVYEKT----GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 353 ~~~~~~----~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
...+.| .....|.+-.. ..+|++|+.+|.|++||--+...++..+.-..+|..+..+.+|++|++.+ +..+.+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeeeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 222222 23455555554 45899999999999999866655666666666999999999999988765 4566666
Q ss_pred ECC
Q 008717 429 DRE 431 (556)
Q Consensus 429 d~~ 431 (556)
|+.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 654
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.76 Score=43.43 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=101.4
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
+.|-...|.++.|+|+.+.|++......-.||=..++ ++-....+.+- ...-.+.|..++.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G-dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG-DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCC-ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455666999999999998888877776666654444 33222333332 233567888888888887778888888876
Q ss_pred CCcEEEEE----------ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--E--EEeecc------cCCCeeEE
Q 008717 348 SGECLHVY----------EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--L--ESWKGQ------KTLRISDM 407 (556)
Q Consensus 348 ~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~--~--~~~~~~------~~~~v~~v 407 (556)
....+... ...+...-.++|.|....|+.+=...-+.+|.+.... + ...... .-..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 55322211 1225567889999998888888877777777664211 0 000000 01145666
Q ss_pred EEccC-CCEEEEEeCCCeEEEEECCCC
Q 008717 408 AITDD-GKRIISICREAAILLLDREAN 433 (556)
Q Consensus 408 ~~s~~-g~~l~~~~~d~~I~i~d~~~~ 433 (556)
.|++. +..++.+..++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 77754 344555555666666666554
No 402
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.41 E-value=0.56 Score=49.81 Aligned_cols=189 Identities=12% Similarity=0.101 Sum_probs=113.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CceE---E-------EEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLI---S-------CGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~---~-------i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
+..++.++.++.|.-.|..+|+.+-.+.... ..+. + +++ .+..++.++.|+.+.-+|.+++++.-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577777888899999999999887765321 1111 1 122 2456778888999999999876654332
Q ss_pred cccC-CCeeEEEEcc---CCCEEEEEe------CCCeEEEEECCCCeeeee----ecC----------------------
Q 008717 398 GQKT-LRISDMAITD---DGKRIISIC------REAAILLLDREANFERWI----EEE---------------------- 441 (556)
Q Consensus 398 ~~~~-~~v~~v~~s~---~g~~l~~~~------~d~~I~i~d~~~~~~~~~----~~~---------------------- 441 (556)
.... ..-..+.-+| ++ .++++. .+|.|.-+|..+++.... ...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 2111 0001111112 33 455543 268999999999872221 110
Q ss_pred -------Cce-EEEEEcCCCCEEEEEEcC-----C-----------eEEEEEcCCCCcceeEEeCccCceeE-------E
Q 008717 442 -------EVI-TSFSLSKDNKYLLVNLIN-----Q-----------EIHLWSIESDPKLVSRYKGHKRARFV-------I 490 (556)
Q Consensus 442 -------~~i-~~v~~sp~~~~l~~~~~d-----g-----------~I~lwd~~~~~~~~~~~~~~~~~~~~-------i 490 (556)
..+ ..+++.|...+++.+..+ + .|.-.|++++ +..-.|+......+- +
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccCCCCcE
Confidence 011 134777777777766522 2 5777888888 777666542221111 1
Q ss_pred EEeecCCCCc---EEEEeeCCCcEEEEEcCCCcee
Q 008717 491 RSCFGGFEQA---FIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 491 ~~~~~s~~~~---~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
-+.. ..+|+ .|+.+..+|.+++.|..+++++
T Consensus 305 l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDL-KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEe-ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1111 23665 7889999999999999999885
No 403
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.35 E-value=1.1 Score=43.27 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=115.9
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE-----------EecCCCCCeEEEE--eCCCCCEEEEEeCCCcE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH-----------RLSGHRKPVFTVS--WSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-----------~~~~h~~~v~~l~--~s~~~~~l~s~~~dg~i 341 (556)
|..+...|+-+.|++-+ |+.+.++++..-....... ........+...+ -...+...+.+.....|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 99999999877776654 5999999987432211000 0111223344444 11233344444445588
Q ss_pred EEEECCCC-----cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC------------CCe
Q 008717 342 RRWDVNSG-----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT------------LRI 404 (556)
Q Consensus 342 ~iwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~v 404 (556)
.+|..... +..+.+.- ...+.+++|. ++.++.|..+ ...+.|+.++....+..... .++
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 88887653 34445443 4678899998 5678888764 47888998665555442221 123
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCe-e-eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 405 SDMAITDDGKRIISICREAAILLLDREANF-E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
..+.. +++.+|++ .+..-.+.|..... . ..+.-...+.++++. ..||++.+. +.|.||++.++ ++++.+..
T Consensus 193 ~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~ 265 (275)
T PF00780_consen 193 GIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPL 265 (275)
T ss_pred EEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEEC
Confidence 33333 34455554 34444455554433 1 233334456667774 457777664 56999999999 88888875
Q ss_pred cc
Q 008717 483 HK 484 (556)
Q Consensus 483 ~~ 484 (556)
..
T Consensus 266 ~~ 267 (275)
T PF00780_consen 266 PN 267 (275)
T ss_pred CC
Confidence 44
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.30 E-value=0.37 Score=49.73 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=101.1
Q ss_pred cccCCcEEEEEEccCCCEEE-EEe--CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC----CCEEEEEeCCCcE
Q 008717 269 EAHSDEVWFLQFSHDGKYLA-SSS--KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN----DHQLLTCGQEEAI 341 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~la-s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~i 341 (556)
..--.+|..++|. ||+.++ |.- .+|.+++=|. .. -+.-..|..+.|.|- ...+++.-....|
T Consensus 16 ~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 16 HQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred HhhhccccceEec-CCCEEEEEeeeeeCCccccCCc------cE----eeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 3344578889997 555443 331 2333333211 12 223345889999984 3345555666799
Q ss_pred EEEECC-----CCcEEEEEecC---CC--ceEEEEEecCCCeEEEEeCCCcEEEEECC--CCeEEEeecccCCCeeEEEE
Q 008717 342 RRWDVN-----SGECLHVYEKT---GV--GLISCGWFLDGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAI 409 (556)
Q Consensus 342 ~iwd~~-----~~~~~~~~~~~---~~--~v~~i~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~ 409 (556)
.+|.+. +++.+.....+ .- -...+.|+|....+++-.....-.+++++ +..++.-. ...+.|.|.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEe
Confidence 999884 22222221111 11 12457899988888776655544556664 34443333 33348999999
Q ss_pred ccCCCEEEEEeC-CCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 410 TDDGKRIISICR-EAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 410 s~~g~~l~~~~~-d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
.+||+.++++-. .=.-++||-.... ...+.-.+.|.++.-.-|. .+|++
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds-qVAva 219 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS-QVAVA 219 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc-eEEEE
Confidence 999998776543 3346788865543 3344556667666554433 34433
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.25 E-value=0.34 Score=49.96 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCCeEEEEeCCCCCEEEEEe---CCCcEEEEECCCCcEEEEEecCCCceEEEEEecC----CCeEEEEeCCCcEEEEECC
Q 008717 317 RKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD----GGGIFAGMTDKSICLWDLD 389 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~dg~i~vwd~~ 389 (556)
-.+|..++|. ||+.++-.. .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899997 666554332 234444322 2233334 35888999983 3345566667899999984
Q ss_pred --C----CeEEEeecc----cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEE
Q 008717 390 --G----RELESWKGQ----KTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYL 456 (556)
Q Consensus 390 --~----~~~~~~~~~----~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l 456 (556)
+ +.+...... -.--...+.|+|....+++-.....=.+++++... ..-+...+.|.|.+|.+||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 1 112111111 11123567899998888777666555667766554 3335667889999999999988
Q ss_pred EEEEcC-CeEEEEEcC
Q 008717 457 LVNLIN-QEIHLWSIE 471 (556)
Q Consensus 457 ~~~~~d-g~I~lwd~~ 471 (556)
+++-.. =.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 877533 235788853
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.20 E-value=0.15 Score=51.53 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=85.5
Q ss_pred CcEEEEEEccCCCEEEEEe-----------CCC-cEEEEEeec-CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 273 DEVWFLQFSHDGKYLASSS-----------KDQ-SAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++.......+...-.....+++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3466789999999777642 223 676665432 23333334444444456889999888 444 44443
Q ss_pred cEEEEECCC-----CcEEEE---Eec----CCCceEEEEEecCCCeEEEEeC-------------------CCcEEEEEC
Q 008717 340 AIRRWDVNS-----GECLHV---YEK----TGVGLISCGWFLDGGGIFAGMT-------------------DKSICLWDL 388 (556)
Q Consensus 340 ~i~iwd~~~-----~~~~~~---~~~----~~~~v~~i~~~~~~~~l~~~~~-------------------dg~i~vwd~ 388 (556)
..++.|... ++.... +.. +......++|.|||.+.++-+. .|.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 121111 222 1234678999999987665441 145667777
Q ss_pred CCCeEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 389 DGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
++..+..+.... .....++|+++|+++++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 776665554443 3678999999998876644
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.19 E-value=1.3 Score=49.08 Aligned_cols=194 Identities=9% Similarity=0.045 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCc--------eEEEEEe----------------cCCCeEEEEeCCCcEE
Q 008717 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG--------LISCGWF----------------LDGGGIFAGMTDKSIC 384 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~----------------~~~~~l~~~~~dg~i~ 384 (556)
+..++.++.++.|.-.|..+|+.+-.+...... ...+.+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988777643210 1112222 1345788899999999
Q ss_pred EEECCCCeEEEeecccCCCe-------------eEEEEcc--CCCEEEEEeC----------CCeEEEEECCCCeeeeee
Q 008717 385 LWDLDGRELESWKGQKTLRI-------------SDMAITD--DGKRIISICR----------EAAILLLDREANFERWIE 439 (556)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~v-------------~~v~~s~--~g~~l~~~~~----------d~~I~i~d~~~~~~~~~~ 439 (556)
-.|.++++......... .| ..+.-.| .+..+++++. +|.|+-+|.++++....-
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99998766553322111 11 0111112 1345666642 688999999999822221
Q ss_pred cC-----------C--------ce-EEEEEcCCCCEEEEEE------------------cCCeEEEEEcCCCCcceeEEe
Q 008717 440 EE-----------E--------VI-TSFSLSKDNKYLLVNL------------------INQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 440 ~~-----------~--------~i-~~v~~sp~~~~l~~~~------------------~dg~I~lwd~~~~~~~~~~~~ 481 (556)
+. + .+ ..+++++....++.+. ..+.|.-.|++++ +..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEEec
Confidence 10 0 11 2345666555554432 1245777788888 7666665
Q ss_pred CccCcee-------EEEEeecCCCCc---EEEEeeCCCcEEEEEcCCCceeee
Q 008717 482 GHKRARF-------VIRSCFGGFEQA---FIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 482 ~~~~~~~-------~i~~~~~s~~~~---~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
......+ .+-...-..+|+ .|+.++.+|.+++.|.++|+++..
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 4111000 010111012553 789999999999999999988654
No 408
>PHA02790 Kelch-like protein; Provisional
Probab=96.15 E-value=0.39 Score=50.51 Aligned_cols=184 Identities=9% Similarity=-0.084 Sum_probs=91.9
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCC--CcEEEEECCCCeEEEeec
Q 008717 328 NDHQLLTCGQEE-----AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKG 398 (556)
Q Consensus 328 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 398 (556)
++..+++||.++ .+..||..+++....-. ...... +++ .-++...++|+.+ ..+..||..++.-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345556666542 47778887765433221 111111 222 2367777777754 358888876654433332
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCC---eEEEEECCCCe-eeeeecCCce-EEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 399 QKTLRISDMAITDDGKRIISICREA---AILLLDREANF-ERWIEEEEVI-TSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~---~I~i~d~~~~~-~~~~~~~~~i-~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.........+..-+|+..+.|+.++ .+..||..+.. ........+. ...+..-+|+..+.|+ .+.+||..++
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC
Confidence 2221222222334677777777553 47789988877 2221111111 1111223566666653 5678888765
Q ss_pred CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC-----CcEEEEEcCCCc
Q 008717 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQNVPEILLSES 520 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d-----g~v~iwd~~~~~ 520 (556)
+ -..+..-..+.....++. .+|+..+.|+.+ ..|.+||..+++
T Consensus 426 -~-W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 -T-WTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -c-EeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 2 112211111111111222 377777777754 356677776654
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.13 E-value=1.3 Score=42.12 Aligned_cols=146 Identities=15% Similarity=0.095 Sum_probs=89.6
Q ss_pred cEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE-CCCCcE
Q 008717 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSGEC 351 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd-~~~~~~ 351 (556)
.+.+.+++++|+.+|... .++.-.+|-...++..... +. ...+....|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--LT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--cc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 2333344444433322222 12 23678889999987777766666666663 333332
Q ss_pred E-EEEecC--CCceEEEEEecCCCeEEEEe---CCCcEEEEECC---CC---e---EEEeecccCCCeeEEEEccCCCEE
Q 008717 352 L-HVYEKT--GVGLISCGWFLDGGGIFAGM---TDKSICLWDLD---GR---E---LESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 352 ~-~~~~~~--~~~v~~i~~~~~~~~l~~~~---~dg~i~vwd~~---~~---~---~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
. ...... ...|..+.++|||..++... .++.|.+--+. .+ . ...........+.+++|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 2 122222 22799999999999988765 34677776552 12 1 112222223378999999999877
Q ss_pred EEEeCCC
Q 008717 417 ISICREA 423 (556)
Q Consensus 417 ~~~~~d~ 423 (556)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665443
No 410
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.12 E-value=1.3 Score=42.15 Aligned_cols=213 Identities=10% Similarity=0.100 Sum_probs=124.3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----CeeEEEEEecC-----CCCCeEEEEeCCCCC------------E
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQVSLKHRLSG-----HRKPVFTVSWSPNDH------------Q 331 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~ 331 (556)
..-|.++++|.+.+-++....+...+||.... ....+.-++.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 35689999999988888778889999998621 11123333332 234567777774322 3
Q ss_pred EEEEeCCCcEEEEECCCCcE-----EEEEecC-CCc-eEEEEEec--CCCeEEEEe-CCCcEEEEECCCCeEEEe---ec
Q 008717 332 LLTCGQEEAIRRWDVNSGEC-----LHVYEKT-GVG-LISCGWFL--DGGGIFAGM-TDKSICLWDLDGRELESW---KG 398 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-~~~-v~~i~~~~--~~~~l~~~~-~dg~i~vwd~~~~~~~~~---~~ 398 (556)
++.++.||+|.-|...-+.. ...+... ... ...+++-. .+.+|+.+. ..++|.+||-.-.++..- ..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67889999999998532221 1222211 222 23445443 356666654 578899998653332110 00
Q ss_pred c----cCC-----------CeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecC---CceEEEEEcC------CCC
Q 008717 399 Q----KTL-----------RISDMAITDDGKRIISICREAAILLLDREANFERWIEEE---EVITSFSLSK------DNK 454 (556)
Q Consensus 399 ~----~~~-----------~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~---~~i~~v~~sp------~~~ 454 (556)
. ... .|+-..-.+++..=+.+..-|.|-+||+...-.+...+. .....|+..| .|.
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 000 011111122222223333447899999988774444333 3355677755 567
Q ss_pred EEEEEEcCCeEEEEEcCCCCcceeEEeCccCc
Q 008717 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (556)
Q Consensus 455 ~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~ 486 (556)
+|+-.-.||+|..||..++ +.+..+....+.
T Consensus 263 lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~ 293 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSG-AQLGQLLDPDNH 293 (336)
T ss_pred eEEeecCCceeEEecCCCC-ceeeeecCCCCC
Confidence 7877778999999999888 777777665543
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.08 E-value=3 Score=45.87 Aligned_cols=236 Identities=15% Similarity=0.101 Sum_probs=130.2
Q ss_pred CCcEEEEEEccC----CCEEEEEe---CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE--eCCC-CCEEEEEeCCCcE
Q 008717 272 SDEVWFLQFSHD----GKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS--WSPN-DHQLLTCGQEEAI 341 (556)
Q Consensus 272 ~~~V~~~~~sp~----g~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~-~~~l~s~~~dg~i 341 (556)
-++|..++.-.+ +..++|++ .||+++|..-.-+-.......+.| -..++.+. +.++ .++|+.+-.+ .-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ce
Confidence 347777776542 23566654 689999986542211122233444 45567777 4432 2355554443 34
Q ss_pred EEEECCCCcEEEEEe--cCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEE
Q 008717 342 RRWDVNSGECLHVYE--KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
++..+. ++ +.... +-......+..+- .++.++=... ..|++++-. +....|.... .++..+.+.+...++.
T Consensus 431 rvl~i~-~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~--~~ti~~~~~n~sqVvv 504 (1096)
T KOG1897|consen 431 RVLNIS-EE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPG--KITIGVVSANASQVVV 504 (1096)
T ss_pred EEEEEc-cc-eEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCC--ceEEEEEeecceEEEE
Confidence 444543 22 11111 1112222233322 3444333332 457777755 3445555544 4565566666667888
Q ss_pred EeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCC------CEEEEEEcCCeEEEEEc-CCCCcceeE--EeCccCc
Q 008717 419 ICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN------KYLLVNLINQEIHLWSI-ESDPKLVSR--YKGHKRA 486 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~------~~l~~~~~dg~I~lwd~-~~~~~~~~~--~~~~~~~ 486 (556)
++.++.+...+..... .........|.|+.++|-| +++++|..+..+.+.-. .+. ..+.. +.+..-+
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iP 583 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIP 583 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccc
Confidence 8887888777777665 2223446789999999842 37888988776544433 333 33322 2333334
Q ss_pred eeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 487 RFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 487 ~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
...+-.++ ..|..+|.++..||.+.-+.+.
T Consensus 584 RSIl~~~~-e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 584 RSILLTTF-EGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred hheeeEEe-eccceEEEEEcCCceEEEEEEE
Confidence 44454556 5568899999999998877554
No 412
>PRK10115 protease 2; Provisional
Probab=96.04 E-value=3.1 Score=45.78 Aligned_cols=193 Identities=9% Similarity=0.026 Sum_probs=100.1
Q ss_pred CCeEEEEeCCCCCEEEEEeC-C----CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC------CcEEEE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQ-E----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLW 386 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~vw 386 (556)
-.+..+.||||+++|+.+.. + ..|++.|+.+|..+...-.... ..++|.+|++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999998887643 2 3588999988864322211111 458999999877665442 367888
Q ss_pred ECCCC--eEEEeecccCCCee-EEEEccCCCEEEEEeC---CCeEEEEECCC--Ce-eeeeecCCc-eEEEEEcCCCCEE
Q 008717 387 DLDGR--ELESWKGQKTLRIS-DMAITDDGKRIISICR---EAAILLLDREA--NF-ERWIEEEEV-ITSFSLSKDNKYL 456 (556)
Q Consensus 387 d~~~~--~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~---d~~I~i~d~~~--~~-~~~~~~~~~-i~~v~~sp~~~~l 456 (556)
++.+. +-..+......... .+..+.++++++..+. ++.+.+|+... +. ......... ...+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88765 22223322222233 3344558887665443 35688888532 22 222333222 22222 3233333
Q ss_pred EEEEcC---CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 457 LVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 457 ~~~~~d---g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
+....+ ..|...++.+. .....+..+......-.+.+ . .+.++++...+|.-.++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~-~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTL-F-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEE-E-CCEEEEEEEeCCEEEEEEE
Confidence 322221 23444455422 22344545532222222333 3 4466777777776555543
No 413
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.94 E-value=1.2 Score=41.74 Aligned_cols=190 Identities=12% Similarity=-0.036 Sum_probs=125.9
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG- 398 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 398 (556)
-..++-+|||..-+++...+.|--.|..+|+....--+.......+..-|||..-++-+.. .|.-.|-++.++..+.-
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567788899888888888889889999998766555566666778888998877765443 56666776666555442
Q ss_pred --ccCCCeeEEEEccCCCEEEEEeCC---------CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 399 --QKTLRISDMAITDDGKRIISICRE---------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 399 --~~~~~v~~v~~s~~g~~l~~~~~d---------~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
+.........|++.|+.-+++... +.|++|+.. .......|+..|||..-++.-.++.|-.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEeccccceEE
Confidence 333467889999999988876532 334444432 2345678899999998888777888888
Q ss_pred EEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.|..++ .-..+..........+-.+.+|.|..-++-...+.++.+|-.+..
T Consensus 215 idp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 215 IDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 887665 122222111101112233447777777776677777777665443
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.92 E-value=1.8 Score=42.06 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=110.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCC--CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (556)
...+..|.|..+.+-+++|. .+. |+....++. ......-... .-...++.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 45788999996666566654 454 455544332 2222211111 123567777643 3344 44444 44444455
Q ss_pred CcEEEEEe---cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 349 GECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 349 ~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
|+.-..+. .-......+....++ .....+..|.|+.=.=.+..-........+.+..+.-++||++++++......
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 55433332 122334444444444 44444555665443222333334344444579999999999999888776667
Q ss_pred EEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE--EeCccCceeEEEEeecCCCCcE
Q 008717 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR--YKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
.-||.-... .........|.++.|+|++...+++ ..|.|++=+.....+.... ..........+.+.| .+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~-~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY-RPPNEI 246 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE-SSSS-E
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe-cCCCCE
Confidence 788866543 3444457889999999998876654 7888888772221011111 111122333466777 666665
Q ss_pred EEEeeCCCcEEEEEcCCCce
Q 008717 502 IASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~ 521 (556)
.++ +..|.+++ ....|+-
T Consensus 247 wa~-gg~G~l~~-S~DgGkt 264 (302)
T PF14870_consen 247 WAV-GGSGTLLV-STDGGKT 264 (302)
T ss_dssp EEE-ESTT-EEE-ESSTTSS
T ss_pred EEE-eCCccEEE-eCCCCcc
Confidence 554 44555443 3344443
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=95.90 E-value=0.47 Score=49.91 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=89.9
Q ss_pred CCCEEEEEeCCC-----cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--CcEEEEECCCCcEEEE-
Q 008717 283 DGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHV- 354 (556)
Q Consensus 283 ~g~~las~s~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~- 354 (556)
++..++.|+.++ ++..||..++ .......+.........+. -++...+.||.+ ..+..||..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667776543 4667777653 2222222221111122222 366677777754 3588888876643321
Q ss_pred -EecCCCceEEEEEecCCCeEEEEeCCC---cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q 008717 355 -YEKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (556)
Q Consensus 355 -~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~ 430 (556)
+....... +++ .-+|...+.|+.++ .+..||.++..-..........-...+..-+|...+.| |.+.+||.
T Consensus 348 ~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecC
Confidence 11111111 222 23677778877654 47788887655433322221111122223456666665 45788999
Q ss_pred CCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008717 431 EANF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (556)
Q Consensus 431 ~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~ 473 (556)
.+.+ ....... ..-.+++. -+|+..++|+.+ ..+..||..++
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8877 2222111 11112222 266777777654 24566665543
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.89 E-value=0.87 Score=43.31 Aligned_cols=142 Identities=14% Similarity=0.106 Sum_probs=88.9
Q ss_pred CeEEEEeCCCCCEEEEEe--C-CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE-CCCC--e
Q 008717 319 PVFTVSWSPNDHQLLTCG--Q-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD-LDGR--E 392 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~--~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd-~~~~--~ 392 (556)
.+.+.+++++++.++... . ...+.++.. +....... ....+..-.|++++...+....+....++. .... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2 234555554 33222222 233677889999977777766666666663 2221 1
Q ss_pred EEEeecccCC-CeeEEEEccCCCEEEEEe---CCCeEEEEECCC---C--e-----eeee-ecCCceEEEEEcCCCCEEE
Q 008717 393 LESWKGQKTL-RISDMAITDDGKRIISIC---REAAILLLDREA---N--F-----ERWI-EEEEVITSFSLSKDNKYLL 457 (556)
Q Consensus 393 ~~~~~~~~~~-~v~~v~~s~~g~~l~~~~---~d~~I~i~d~~~---~--~-----~~~~-~~~~~i~~v~~sp~~~~l~ 457 (556)
.......... .|..+.++|||..++... .++.|.+--+.. + . .... .....++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222111 799999999999887765 356777765432 2 1 1111 2356789999999998877
Q ss_pred EEEcCC
Q 008717 458 VNLINQ 463 (556)
Q Consensus 458 ~~~~dg 463 (556)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 766544
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.86 E-value=0.027 Score=50.80 Aligned_cols=104 Identities=10% Similarity=0.071 Sum_probs=67.5
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEe-CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-Cc
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VG 361 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 361 (556)
+..++.|+.+|.|.+|+...-+. ....+..-...|.++.- -.++.+..+++.||.|+.|++.-++.+.....|. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA--HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccch--HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 45688899999999999873221 11111222233333322 2345688899999999999999888877777676 45
Q ss_pred eEEEEEecCCCeEEEE--eCCCcEEEEECC
Q 008717 362 LISCGWFLDGGGIFAG--MTDKSICLWDLD 389 (556)
Q Consensus 362 v~~i~~~~~~~~l~~~--~~dg~i~vwd~~ 389 (556)
+........+..+.++ +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 5555555556666666 666677777764
No 418
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.85 E-value=2.5 Score=43.07 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=92.2
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCC-----CCCEEEEEeCCCcEEEEECC--CCc----
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVN--SGE---- 350 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~--~~~---- 350 (556)
+...|++||.+|.++||+...++. ...+..-..-..+|..+..-+ +...||. -.-..+.+|.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999864331 111111122456777776532 2234444 334577788772 111
Q ss_pred ---EEEEEecC--CCceEEEEEec----C-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe
Q 008717 351 ---CLHVYEKT--GVGLISCGWFL----D-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 351 ---~~~~~~~~--~~~v~~i~~~~----~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
.+..+..| ......+++-| . -.++.+-+.||.+.+|+-+.-......... --...++|.+....+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEEec
Confidence 12222223 22334444444 1 357888999999999998776655554442 2567788999888999999
Q ss_pred CCCeEEEEECC
Q 008717 421 REAAILLLDRE 431 (556)
Q Consensus 421 ~d~~I~i~d~~ 431 (556)
.+..|..|...
T Consensus 194 ss~~l~~Yky~ 204 (418)
T PF14727_consen 194 SSWTLECYKYQ 204 (418)
T ss_pred CceeEEEecHH
Confidence 99999988763
No 419
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.82 E-value=1.8 Score=43.62 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=85.0
Q ss_pred EccCCCEEEEE--eCC----CcEEEEEeecCCeeEEEEEecCC---CCCeEEEEeCCCCCEEEEEeC-------------
Q 008717 280 FSHDGKYLASS--SKD----QSAIIWEVKEDGQVSLKHRLSGH---RKPVFTVSWSPNDHQLLTCGQ------------- 337 (556)
Q Consensus 280 ~sp~g~~las~--s~d----g~i~iwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~------------- 337 (556)
--|+|..++++ ..+ |-+.+.|-++- ......... ..--+.+.|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 34688888874 222 34555554432 333333321 223456778888888887642
Q ss_pred -------CCcEEEEECCCCcEEEEEecCC--CceEEEEEec--CCCeEEE-EeCCCcEEEEEC-CC-----CeEEEeecc
Q 008717 338 -------EEAIRRWDVNSGECLHVYEKTG--VGLISCGWFL--DGGGIFA-GMTDKSICLWDL-DG-----RELESWKGQ 399 (556)
Q Consensus 338 -------dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~--~~~~l~~-~~~dg~i~vwd~-~~-----~~~~~~~~~ 399 (556)
..++.+||+.+.+.++++.-.. .....+.|.. +..+=++ +.-.++|..|-- +. +++..+...
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 2579999999999999987543 2345666654 4445443 334455555543 22 222222211
Q ss_pred --------c--------CCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe-ee-----eeec---------------C
Q 008717 400 --------K--------TLRISDMAITDDGKRIISIC-REAAILLLDREANF-ER-----WIEE---------------E 441 (556)
Q Consensus 400 --------~--------~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~-~~-----~~~~---------------~ 441 (556)
. ..-|+++.+|.|.++|..++ .+|.|+.||+.... .+ .++. .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 0 12579999999999987766 58999999998754 11 1111 1
Q ss_pred CceEEEEEcCCCCEEEEEE
Q 008717 442 EVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~ 460 (556)
+...-+.+|.||+.|.+.+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2235578888998887654
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.81 E-value=0.46 Score=48.07 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=82.3
Q ss_pred CCeEEEEeCCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--EEEEEecCCCceEEEEEecCCCeEEEEeCCC
Q 008717 318 KPVFTVSWSPNDHQLLTCG-----------QEE-AIRRWDVNS--GE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 381 (556)
.....++|.++|+.+++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ ++++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456789999998777653 223 677776533 33 234444344456789998888 44455544
Q ss_pred cEEEEECCCC-----e---EEE-eecc---cCCCeeEEEEccCCCEEEEEeC-------------------CCeEEEEEC
Q 008717 382 SICLWDLDGR-----E---LES-WKGQ---KTLRISDMAITDDGKRIISICR-------------------EAAILLLDR 430 (556)
Q Consensus 382 ~i~vwd~~~~-----~---~~~-~~~~---~~~~v~~v~~s~~g~~l~~~~~-------------------d~~I~i~d~ 430 (556)
..++.|..+. + +.. +... +......++|.|||.+.++.+. .+.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 1 111 1111 1235789999999987665441 145667777
Q ss_pred CCCeeeeee-cCCceEEEEEcCCCCEEEEEE
Q 008717 431 EANFERWIE-EEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 431 ~~~~~~~~~-~~~~i~~v~~sp~~~~l~~~~ 460 (556)
.+....... .-.....++|+|+|+++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 666633332 234467899999998877644
No 421
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.77 E-value=0.03 Score=37.37 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~ 302 (556)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.75 E-value=0.035 Score=37.04 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
....|.+++|+|..+.||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 4543
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.79 Score=48.69 Aligned_cols=181 Identities=13% Similarity=0.271 Sum_probs=96.7
Q ss_pred CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE----ecCCCceEEEEE
Q 008717 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY----EKTGVGLISCGW 367 (556)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~i~~ 367 (556)
.-..|+|++.. + ..+..+.-..+.+..+.|+.+. .|+....+|++++|++. |+.+... ......|..+.+
T Consensus 62 a~~~I~If~~s--G--~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 62 ARPYIRIFNIS--G--QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred cceeEEEEecc--c--cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEE
Confidence 34468888876 2 2333333334478899999655 56667899999999985 4333331 223344666666
Q ss_pred ecCCCeEEEEeCCCcEEEE-ECCCCeEEEeecccCCCe--eEEEEccCCC---EEEEEeCCCeEEEEECCCCe---eeee
Q 008717 368 FLDGGGIFAGMTDKSICLW-DLDGRELESWKGQKTLRI--SDMAITDDGK---RIISICREAAILLLDREANF---ERWI 438 (556)
Q Consensus 368 ~~~~~~l~~~~~dg~i~vw-d~~~~~~~~~~~~~~~~v--~~v~~s~~g~---~l~~~~~d~~I~i~d~~~~~---~~~~ 438 (556)
..+|-.++ ..+|.+.+- +...-............. .|-+..+++. .++-....-...++-..... ..+.
T Consensus 136 f~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~ 213 (829)
T KOG2280|consen 136 FHNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALS 213 (829)
T ss_pred ecCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccC
Confidence 65553333 334555443 333323333333222122 2222222221 11111100001122222222 2333
Q ss_pred ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
...+.+..+++||+.++|+--...|.|.+-++... +....+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~-~~lce~~ 255 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS-QILCEFN 255 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchh-hhhhccC
Confidence 33467888999999999999999999999888766 5555554
No 424
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.52 E-value=2.2 Score=40.03 Aligned_cols=240 Identities=12% Similarity=0.022 Sum_probs=145.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
+.-..++-+|||..-.++...+.|--.|..++. ....--+....-..+..-|||..-++-+.. -|.-.|-++.+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE---VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCc---eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 345677888899888888877777777777653 222222333344567778888766654433 5555666555432
Q ss_pred EEE----ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 353 HVY----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 353 ~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
.| +..........|.+.|+.-+++.. |.---.|-.++.+..+........+.|+.+|||...++.-.++.|...
T Consensus 138 -~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 138 -RFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred -EeecccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 22 223556778889999988888752 322223444555555555555578999999999988887788888888
Q ss_pred ECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEE
Q 008717 429 DREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 429 d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
|..++. ..+... ...-..+.-+|.|+.-++....+.++.+|-.+..-.-..+.+....-+.+++ ...++.-.+
T Consensus 216 dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grVW~s 292 (353)
T COG4257 216 DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRVWLS 292 (353)
T ss_pred ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcEEee
Confidence 888776 222221 2334556678888888887778888888876641111222333333333333 334443333
Q ss_pred eeCCCcEEEEEcCCCce
Q 008717 505 GSEDSQNVPEILLSESV 521 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~ 521 (556)
--..|.|.-+|-.+...
T Consensus 293 ea~agai~rfdpeta~f 309 (353)
T COG4257 293 EADAGAIGRFDPETARF 309 (353)
T ss_pred ccccCceeecCcccceE
Confidence 33345555555554443
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.44 E-value=0.99 Score=48.13 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCceEEEEEe--cCCCeEEEEeCCCcEEEEECC-----
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLD----- 389 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~dg~i~vwd~~----- 389 (556)
....-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|.++.|. |+++.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444445544444443344579999998876433222 346789999997 589999999999999998542
Q ss_pred C-----CeEE--EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 390 G-----RELE--SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 390 ~-----~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
. ..+. .+......+|.+..|.++|..++.+ ++.+.|+|-.-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 1 1111 2233344589999999999766544 45788887543
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.37 E-value=1.1 Score=45.35 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=92.8
Q ss_pred CCCEEEE-EeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-------eEEEEeCCCcEEEEECC--CCeEEEee
Q 008717 328 NDHQLLT-CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-------GIFAGMTDKSICLWDLD--GRELESWK 397 (556)
Q Consensus 328 ~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~dg~i~vwd~~--~~~~~~~~ 397 (556)
|...|+. |+....++-.|+..|+.+.....+..- -+.|.|+.+ .-++|-.+..|.-.|.+ ++++....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4444443 444457888899999999988877664 466777432 23455556666666765 44433322
Q ss_pred ccc---CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 398 GQK---TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 398 ~~~---~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
... .....+..-. ...++++++..|.|++||.-... ..+.+....|..+..+.+|+++++.+ ...+.+.|++
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 211 1123333333 34589999999999999977665 44556678899999999999998877 5677788874
No 427
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.35 E-value=3.2 Score=41.04 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=56.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEE---EEEecCCCce--EEEEEecCCCeEEEEeC-----CCcEEEEECCCCe
Q 008717 328 NDHQLLTCGQE-----EAIRRWDVNSGECL---HVYEKTGVGL--ISCGWFLDGGGIFAGMT-----DKSICLWDLDGRE 392 (556)
Q Consensus 328 ~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~v--~~i~~~~~~~~l~~~~~-----dg~i~vwd~~~~~ 392 (556)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666777754 35677787766531 2222111111 12222 25667777764 2368889987655
Q ss_pred EEEeeccc-CCCeeEEEEccCCCEEEEEeCCC----eEEEEECCCCe
Q 008717 393 LESWKGQK-TLRISDMAITDDGKRIISICREA----AILLLDREANF 434 (556)
Q Consensus 393 ~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~----~I~i~d~~~~~ 434 (556)
-....... .......+...+++..+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 44333211 11222333345677777777653 35789998877
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.27 Score=54.26 Aligned_cols=144 Identities=8% Similarity=0.062 Sum_probs=90.3
Q ss_pred cEEEEEEccCCCEEEEE--eCCCcEEEEEeecCCe-----eEEE---EEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEE
Q 008717 274 EVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQ-----VSLK---HRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIR 342 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~--s~dg~i~iwd~~~~~~-----~~~~---~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~ 342 (556)
+|..+...+|+...+.. +.+-.|..||+.+-.. ..++ .+......-..++.|+|.- ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56666677787755443 3444788899874211 0111 1111222345678898853 3456677888888
Q ss_pred EEECCCCcE-EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec---ccCCCeeEEEEccCCCEEEE
Q 008717 343 RWDVNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 343 iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~ 418 (556)
+..+..-.. +..+ .-....++++|+|.|+.+++|-..|++.-|.........+.. .....|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887643222 2222 235568999999999999999999999988775433222222 22347999999887766654
No 429
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=4.2 Score=40.91 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=88.1
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE----EEEecC
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL----HVYEKT 358 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~ 358 (556)
|.+..+.+...|.+.=|.+...+.--++..-....++|.++.||+|.+.||.--.+++|.+.+....+.. .+.+..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 3333333334556666766533321222223345679999999999999999999999999997433222 222334
Q ss_pred CCceEEEEEecCCCeEEEEeCCCcEEEEECC--CCeEEEeecccCCCeeEEEEccCCCEEEEEe--CCCeEEEEECCCC
Q 008717 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISIC--REAAILLLDREAN 433 (556)
Q Consensus 359 ~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d~~I~i~d~~~~ 433 (556)
...|....|..+ .-++.-...| +-+|... .+.++....+.. .|.-..|.++.+.++.++ ..+++.=+-++++
T Consensus 112 ~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 112 NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEEeec
Confidence 566899999855 5555555544 5555543 344444444433 788888888877644433 3344444444443
No 430
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=3.4 Score=39.16 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=96.0
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe---E
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---L 393 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~---~ 393 (556)
.+-+..+.++ +++...+..+.-++|.|+.+.........-...-..-.|.-.|++..++..|.-+.+.|+..-. +
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3456667776 5577777777889999998765433332211111223344568999999866667788986422 2
Q ss_pred EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
.-...........++.| |++-..+..|+-+.+.|+.... ..+.++ ...+.++..+++..+++... --+.+-|
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd 239 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVD 239 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence 22222222234566665 6677777899999999999877 444443 33688888888877776654 3366667
Q ss_pred cCCC
Q 008717 470 IESD 473 (556)
Q Consensus 470 ~~~~ 473 (556)
..+.
T Consensus 240 ~s~~ 243 (370)
T COG5276 240 VSGP 243 (370)
T ss_pred cCCC
Confidence 6654
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.92 E-value=7.8 Score=43.04 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=87.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce-------------EEEEEec--CCCeEEEEeC----------CCcE
Q 008717 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL-------------ISCGWFL--DGGGIFAGMT----------DKSI 383 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-------------~~i~~~~--~~~~l~~~~~----------dg~i 383 (556)
+..++.++.|+.+.-.|.++|+.+..+... +.+ ..+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 457888899999999999999988766421 111 0011111 2346666643 6889
Q ss_pred EEEECCCCeEEEeec-c----------------cCCCe-eEEEEccCCCEEEEEe------------------CCCeEEE
Q 008717 384 CLWDLDGRELESWKG-Q----------------KTLRI-SDMAITDDGKRIISIC------------------REAAILL 427 (556)
Q Consensus 384 ~vwd~~~~~~~~~~~-~----------------~~~~v-~~v~~s~~g~~l~~~~------------------~d~~I~i 427 (556)
+-+|.+++++.-... . ....+ ..++++++...++.+. ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999998766532211 0 00011 2345555544444322 1255777
Q ss_pred EECCCCeee----eeecCC-------ceEEEEEcC-CCC---EEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 428 LDREANFER----WIEEEE-------VITSFSLSK-DNK---YLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 428 ~d~~~~~~~----~~~~~~-------~i~~v~~sp-~~~---~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
.|.++++.. ...|+- ...-+.+.. +|+ .++.++.+|.++++|-+++ +.+...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEeec
Confidence 788888722 222211 111122333 563 7889999999999999998 665543
No 432
>PLN02153 epithiospecifier protein
Probab=94.88 E-value=4.6 Score=40.29 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=72.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEE--Eec---CCCc-eEEEEEecCCCeEEEEeCC-----------CcEEE
Q 008717 328 NDHQLLTCGQE-----EAIRRWDVNSGECLHV--YEK---TGVG-LISCGWFLDGGGIFAGMTD-----------KSICL 385 (556)
Q Consensus 328 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~---~~~~-v~~i~~~~~~~~l~~~~~d-----------g~i~v 385 (556)
+++.++.|+.+ ..+.+||..+.+.... +.. .... -.+++ .-+++.++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 46667777753 3578899887654321 110 1111 12222 2356677777753 24778
Q ss_pred EECCCCeEEEeeccc---CCCe-eEEEEccCCCEEEEEeCC-------------CeEEEEECCCCe-eeeee----cCCc
Q 008717 386 WDLDGRELESWKGQK---TLRI-SDMAITDDGKRIISICRE-------------AAILLLDREANF-ERWIE----EEEV 443 (556)
Q Consensus 386 wd~~~~~~~~~~~~~---~~~v-~~v~~s~~g~~l~~~~~d-------------~~I~i~d~~~~~-~~~~~----~~~~ 443 (556)
||.++..-..+.... ..+- .+++ .-+++.++.++.+ ..|.+||..+.+ ..... ....
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 898765543332211 0011 1222 2355665655431 468999998887 32221 1111
Q ss_pred eEEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCC
Q 008717 444 ITSFSLSKDNKYLLVNLIN--------------QEIHLWSIESD 473 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~d--------------g~I~lwd~~~~ 473 (556)
....+..-++++++.|+.. +.+..+|..+.
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 1111222356777777742 25778887654
No 433
>PLN02153 epithiospecifier protein
Probab=94.75 E-value=3.6 Score=41.05 Aligned_cols=147 Identities=12% Similarity=0.017 Sum_probs=73.7
Q ss_pred CCCeEEEEeCC-----CcEEEEECCCCeEEEeecc-----cCCCeeEEEEccCCCEEEEEeCC-----------CeEEEE
Q 008717 370 DGGGIFAGMTD-----KSICLWDLDGRELESWKGQ-----KTLRISDMAITDDGKRIISICRE-----------AAILLL 428 (556)
Q Consensus 370 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~~~~~d-----------~~I~i~ 428 (556)
++..++.|+.+ ..+.+||+.+..-...... ........+..-+++.++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56677777753 2578899877554433211 11112222223456666776643 257889
Q ss_pred ECCCCe-eeeeecC----Cc-eEEEEEcCCCCEEEEEEcC-------------CeEEEEEcCCCCcceeEEeC--c-cCc
Q 008717 429 DREANF-ERWIEEE----EV-ITSFSLSKDNKYLLVNLIN-------------QEIHLWSIESDPKLVSRYKG--H-KRA 486 (556)
Q Consensus 429 d~~~~~-~~~~~~~----~~-i~~v~~sp~~~~l~~~~~d-------------g~I~lwd~~~~~~~~~~~~~--~-~~~ 486 (556)
|..+.+ ....... .. -.+++. -+++.++.++.+ ..+.+||..+. + -..+.. . ...
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~-~-W~~~~~~g~~P~~ 241 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG-K-WTEVETTGAKPSA 241 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC-c-EEeccccCCCCCC
Confidence 998877 3222111 11 112222 255665555422 45888998765 2 122211 0 111
Q ss_pred eeEEEEeecCCCCcEEEEeeCC--------------CcEEEEEcCCCce
Q 008717 487 RFVIRSCFGGFEQAFIASGSED--------------SQNVPEILLSESV 521 (556)
Q Consensus 487 ~~~i~~~~~s~~~~~l~sgs~d--------------g~v~iwd~~~~~~ 521 (556)
.....++ ..++++++.|+.. +.|+.+|+.+..-
T Consensus 242 r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 242 RSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred cceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 1111122 2356777777752 2578888876654
No 434
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=94.62 E-value=0.04 Score=48.50 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH
Q 008717 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS 97 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~ 97 (556)
...|.+||++.||+..||.++..+||+.+++.++++
T Consensus 164 re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE~p 199 (199)
T PF06588_consen 164 REKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLEHP 199 (199)
T ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCCCC
Confidence 477899999999999999999999999999999864
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.52 E-value=4.3 Score=38.29 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=95.3
Q ss_pred eEEEEeCCCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCC-CceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 008717 320 VFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 396 (556)
...+.|..+|.++-+.+.-| .|+.+|+.+|+......-.. ----.++.. +++.....-.++...+||.++-+....
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45678867888888888776 69999999999876655332 112334443 344555566789999999987544333
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----eeeeecC---CceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEE---EVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~~---~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
..... .=+.++ .|++.|+.+.....|+++|..+.+ ....... ..++-+.+- +|...|=.-....|...|
T Consensus 126 ~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 32221 445555 567788888888899999988765 2222222 235566665 565555445566788889
Q ss_pred cCCCCcceeEE
Q 008717 470 IESDPKLVSRY 480 (556)
Q Consensus 470 ~~~~~~~~~~~ 480 (556)
..++ +.+..+
T Consensus 202 p~tG-~V~~~i 211 (264)
T PF05096_consen 202 PETG-KVVGWI 211 (264)
T ss_dssp TTT--BEEEEE
T ss_pred CCCC-eEEEEE
Confidence 8888 766655
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.35 Score=53.47 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=88.8
Q ss_pred CeEEEEeCCCCCEEEEE--eCCCcEEEEECCCCcEE-----EEE------ecCCCceEEEEEecCC-CeEEEEeCCCcEE
Q 008717 319 PVFTVSWSPNDHQLLTC--GQEEAIRRWDVNSGECL-----HVY------EKTGVGLISCGWFLDG-GGIFAGMTDKSIC 384 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~-----~~~------~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~ 384 (556)
+|..+...+|+...+.. +.+-.|..||+++-..- ..+ ........++.|+|.- ...+++..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676554433 33347889998653211 111 1223445678898852 3456677888888
Q ss_pred EEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee-----ecCCceEEEEEcCCCCEEEEE
Q 008717 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-----EEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~-----~~~~~i~~v~~sp~~~~l~~~ 459 (556)
+..+.-.........-...+++++|+|.|+.+++|-..|++.-|-..-.....+ .....|.+++|-....++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 887753211111112223789999999999999999999999998665431111 125779999998877777654
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.38 E-value=2.6 Score=35.11 Aligned_cols=113 Identities=8% Similarity=0.073 Sum_probs=70.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCe---------eeeeecCCceEEEEEcC-----CCCEEEEEEcCCeEEEEEcCC
Q 008717 407 MAITDDGKRIISICREAAILLLDREANF---------ERWIEEEEVITSFSLSK-----DNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~~I~i~d~~~~~---------~~~~~~~~~i~~v~~sp-----~~~~l~~~~~dg~I~lwd~~~ 472 (556)
-.|......|++++..|.|.|++..... ..+......|++++-.+ +...|+.|+ ...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 3555566678889999999999876432 46667778888886544 345677776 66799999987
Q ss_pred CCcceeEEeCccCceeEEEE-eecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 473 DPKLVSRYKGHKRARFVIRS-CFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
...... +.-.+.+..+-+ .+...+..+++ .+.+..|.-||....+...
T Consensus 83 N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 83 NSDLFY--KEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred Cchhhh--hhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEE
Confidence 623222 222233333322 33222344444 4456778777777666543
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=1 Score=45.02 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=90.7
Q ss_pred cCCCeEEEEeCCCcEEEEECCC---CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeeee
Q 008717 369 LDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIE 439 (556)
Q Consensus 369 ~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~~ 439 (556)
.|.+..+.+...|.+.-|-..+ .....+.....++|.++.|++|.+.+++--.+++|.+++....+ .....
T Consensus 31 DDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 31 DDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred ccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 3555555555566677776653 22334444445589999999999999999999999999985544 22233
Q ss_pred cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee--CCCcEEEEEcC
Q 008717 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS--EDSQNVPEILL 517 (556)
Q Consensus 440 ~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~ 517 (556)
....|..+.|+.+ .-+|..+ +..+.+|-+......++..+.|.-. +.+..|.++.+.+.-++ ..+++.=+.+.
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekrslRlVks~~~n---vnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLN---VNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred CcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccC---ccEEEEccccceEeeeccccccccccEEEe
Confidence 4556899999976 4566655 3447777765543556666666655 33333366666543332 34444444444
Q ss_pred CC
Q 008717 518 SE 519 (556)
Q Consensus 518 ~~ 519 (556)
++
T Consensus 186 ~~ 187 (657)
T KOG2377|consen 186 AG 187 (657)
T ss_pred ec
Confidence 43
No 439
>PLN02193 nitrile-specifier protein
Probab=93.99 E-value=5.7 Score=41.66 Aligned_cols=188 Identities=12% Similarity=0.004 Sum_probs=94.5
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecC----C-CceEEEEEecCCCeEEEEeCC-----CcEEEEECCC
Q 008717 328 NDHQLLTCGQE-------EAIRRWDVNSGECLHVYEKT----G-VGLISCGWFLDGGGIFAGMTD-----KSICLWDLDG 390 (556)
Q Consensus 328 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~----~-~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~ 390 (556)
++..++.|+.+ ..+.+||+.+.+-.. .... . .........-++..++.|+.+ ..+..||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 34556666643 247788887765432 2111 0 011111122256666777654 3588899987
Q ss_pred CeEEEeecc---cCCCeeEEEEccCCCEEEEEeCC-----CeEEEEECCCCe-eeeeec------CCceEEEEEcCCCCE
Q 008717 391 RELESWKGQ---KTLRISDMAITDDGKRIISICRE-----AAILLLDREANF-ERWIEE------EEVITSFSLSKDNKY 455 (556)
Q Consensus 391 ~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~~d-----~~I~i~d~~~~~-~~~~~~------~~~i~~v~~sp~~~~ 455 (556)
.+-...... ....-...+..-++++++.|+.+ ..+..||+.+.+ ...... .... .++. -+++.
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gki 331 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKV 331 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcE
Confidence 654443322 11111111222355666666654 347788988876 221110 1111 1222 25677
Q ss_pred EEEEEcC----CeEEEEEcCCCCcceeEEeCc---cCceeEEEEeecCCCCcEEEEeeCC--------------CcEEEE
Q 008717 456 LLVNLIN----QEIHLWSIESDPKLVSRYKGH---KRARFVIRSCFGGFEQAFIASGSED--------------SQNVPE 514 (556)
Q Consensus 456 l~~~~~d----g~I~lwd~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~sgs~d--------------g~v~iw 514 (556)
++.++.+ ..+.+||+.+. + -..+... ..+.....++ ..++++++.|+.+ +.+.++
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~-~-W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQD-K-WTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEEECCCCCccCceEEEECCCC-E-EEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEE
Confidence 7777655 45899998875 2 2222211 1111111122 2366777778753 247888
Q ss_pred EcCCCcee
Q 008717 515 ILLSESVA 522 (556)
Q Consensus 515 d~~~~~~~ 522 (556)
|+.+..-.
T Consensus 408 D~~t~~W~ 415 (470)
T PLN02193 408 DTETLQWE 415 (470)
T ss_pred EcCcCEEE
Confidence 88876544
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.96 E-value=1.7 Score=46.50 Aligned_cols=111 Identities=13% Similarity=0.254 Sum_probs=72.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeC--CCCCEEEEEeCCCcEEEEECC----
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS--PNDHQLLTCGQEEAIRRWDVN---- 347 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~---- 347 (556)
.+.-+.-|.-++.-++-+....+.|||...+ ..+....+ ...+.|.++.|. |+++.+++.|....|.++.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444444444443333444557999999854 34444444 457889999995 589999999999999998542
Q ss_pred -C----CcEEEEE--ecC-CCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 348 -S----GECLHVY--EKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 348 -~----~~~~~~~--~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
. -..++.+ ..+ ..+|.+..|.++|..++.++ +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 1123332 223 36789999999887666554 46888874
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.95 E-value=12 Score=41.22 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECC---------CCcE---EEEE--------ecCCCceEEEEEecC---CCeE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---------SGEC---LHVY--------EKTGVGLISCGWFLD---GGGI 374 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~~~---~~~~--------~~~~~~v~~i~~~~~---~~~l 374 (556)
-.|..+..+|+|.+++..|..|.+.+.=.+ .|+. .+++ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468899999999999998887644332211 1111 1111 123567889999995 5889
Q ss_pred EEEeCCCcEEEEECCC
Q 008717 375 FAGMTDKSICLWDLDG 390 (556)
Q Consensus 375 ~~~~~dg~i~vwd~~~ 390 (556)
++-+.|+++++||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999963
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.84 E-value=7.3 Score=39.66 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=81.2
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-----e
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-----E 392 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-----~ 392 (556)
...+..++|+.+++.+.....++-||- |.. ...-......+..+.|.+++..++++ .+|.+..=+-.+. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccc
Confidence 445566778777776554433334443 322 22222335568899999888877665 5566544332222 2
Q ss_pred EEEeecc-cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeee---ecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 393 LESWKGQ-KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 393 ~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~---~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
....... ....+.++.|.+++..+++ +..|.+....-.... .... .-......+.|.++++.+++|. +|.|.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEE
Confidence 2222211 1125889999988776555 566766665433222 2211 2245688999988877666665 777654
Q ss_pred E
Q 008717 468 W 468 (556)
Q Consensus 468 w 468 (556)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.71 E-value=2.5 Score=35.17 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=67.3
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCC---------eEEEeecccCCCeeEEEEcc-----CCCEEEEEeCCCeEEEEECC
Q 008717 366 GWFLDGGGIFAGMTDKSICLWDLDGR---------ELESWKGQKTLRISDMAITD-----DGKRIISICREAAILLLDRE 431 (556)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~v~~s~-----~g~~l~~~~~d~~I~i~d~~ 431 (556)
.|......|++++.-|+|.+++.... .+..+.... .|++++-.+ +...|+.| ....+..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~--~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ--EITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC--ceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 45445556777888888999887532 222222222 677776544 23345555 55789999999
Q ss_pred CCe-eeeeecCCceEEEEEcC----CCCEEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 432 ANF-ERWIEEEEVITSFSLSK----DNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 432 ~~~-~~~~~~~~~i~~v~~sp----~~~~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
... ..+......+.++.+-. +..++++|+ +..|.-||.... +...+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~-e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN-EIFWTV 133 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc-EEEEEe
Confidence 888 44455556677776633 344555555 777888886654 544443
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=93.66 E-value=8.3 Score=38.38 Aligned_cols=150 Identities=10% Similarity=-0.007 Sum_probs=82.2
Q ss_pred CCceEEEEEecCCCeEEEEeCCCcEEE-EECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--e
Q 008717 359 GVGLISCGWFLDGGGIFAGMTDKSICL-WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--E 435 (556)
Q Consensus 359 ~~~v~~i~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~ 435 (556)
...+.++.+.|++.+++++ ..|.+.. +|-.+..-..........++++.+.++++.++++ ..|.+++=....+. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4568889999887666555 4465543 2322233333333444479999999999876665 55766532333333 1
Q ss_pred eeee----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-CceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 436 RWIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 436 ~~~~----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
.... ....+..+.+.|++..++++ .+|.|. .....+ +.-....... .+.....+.| ..+++. +..+..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~~~~~~~~~~~~~~~~-~~~~~~-~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKDPVGEEVPSNFYKIVF-LDPEKG-FVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeECCcCCCCCcceEEEEE-eCCCce-EEECCCce
Confidence 1111 12457889999988766555 467554 333433 3333332111 1112233555 334444 44667888
Q ss_pred EEEEE
Q 008717 511 NVPEI 515 (556)
Q Consensus 511 v~iwd 515 (556)
|.-|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 87775
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.56 E-value=6.9 Score=38.68 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=54.0
Q ss_pred CCCeEEEEeCCC-----cEEEEECCCCeE----EEeecccCCCeeEEEEccCCCEEEEEeC-----CCeEEEEECCCCe-
Q 008717 370 DGGGIFAGMTDK-----SICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF- 434 (556)
Q Consensus 370 ~~~~l~~~~~dg-----~i~vwd~~~~~~----~~~~~~~~~~v~~v~~s~~g~~l~~~~~-----d~~I~i~d~~~~~- 434 (556)
++..++.|+.++ .+..+|+.+..- ..........-...+..-+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 566667777543 567777765442 1111111111111122235666666664 2468899998877
Q ss_pred eeeeec--CCceEEEEEcCCCCEEEEEEcCC----eEEEEEcCCC
Q 008717 435 ERWIEE--EEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESD 473 (556)
Q Consensus 435 ~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg----~I~lwd~~~~ 473 (556)
...... .......+..-++++.+.|+.++ .+.+||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 322211 11222233334677777777653 3568888765
No 446
>PLN02193 nitrile-specifier protein
Probab=93.55 E-value=9.5 Score=40.03 Aligned_cols=145 Identities=8% Similarity=-0.022 Sum_probs=75.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEec---CC-CceEEEEEecCCCeEEEEeCCC-----cEEEEECCCCeE
Q 008717 328 NDHQLLTCGQE-----EAIRRWDVNSGECLHVYEK---TG-VGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGREL 393 (556)
Q Consensus 328 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~-~~v~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 393 (556)
++...+.|+.+ ..+.++|+.+.+....-.. .. ..-.+++ .-+++.++.|+.++ .+..||+.+..-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666777754 3588899887654332111 11 1111222 23566677776543 467888876554
Q ss_pred EEeeccc---CCCeeEEEEccCCCEEEEEeCC----CeEEEEECCCCe-eeeeec----CCceEEEEEcCCCCEEEEEEc
Q 008717 394 ESWKGQK---TLRISDMAITDDGKRIISICRE----AAILLLDREANF-ERWIEE----EEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 394 ~~~~~~~---~~~v~~v~~s~~g~~l~~~~~d----~~I~i~d~~~~~-~~~~~~----~~~i~~v~~sp~~~~l~~~~~ 461 (556)
....... ..+....+..-+++.++.++.+ ..+.+||+.+.+ ...... .......+..-++++++.|+.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 3332110 0011111122356777777655 468999999887 322211 111111122235677777774
Q ss_pred C--------------CeEEEEEcCCC
Q 008717 462 N--------------QEIHLWSIESD 473 (556)
Q Consensus 462 d--------------g~I~lwd~~~~ 473 (556)
+ +.+.+||+.+.
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcC
Confidence 3 24788888765
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.40 E-value=0.011 Score=58.97 Aligned_cols=136 Identities=13% Similarity=0.229 Sum_probs=97.2
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEeecc
Q 008717 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQ 399 (556)
Q Consensus 321 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~ 399 (556)
....|-|.+.-++.++.+..+..||- .|+...... ..+....++|..++..++. +-..+.+.+||+.+....++...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34578887777888888888999994 455444443 3344567888887776554 55678999999976444333333
Q ss_pred cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee-cCCceEEEEEcCCCCEEEE
Q 008717 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE-EEEVITSFSLSKDNKYLLV 458 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~-~~~~i~~v~~sp~~~~l~~ 458 (556)
....-.-+.|++.+..++.+...+.+.||+..+.+ ....+ |...++++++.+.+..+..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 22233347888988889999899999999998877 44444 8889999999998754443
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.35 E-value=0.086 Score=56.53 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=92.4
Q ss_pred ecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeec-CCeeE---EEEEecCCCCCeEEEEeCC---CCCEEEEEeCCC
Q 008717 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKE-DGQVS---LKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEE 339 (556)
Q Consensus 268 l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~-~~~~~---~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg 339 (556)
++|..+.|-.++|.. +...++ -.-|.+.||++.- .+++. .++....-...+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 466777788888755 222222 2336788998762 11111 1222222333445566665 666777777788
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEE-----------EEecCCCeEEEEeCCCcEEEEECC--C----CeEEEeecccCC
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISC-----------GWFLDGGGIFAGMTDKSICLWDLD--G----RELESWKGQKTL 402 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i-----------~~~~~~~~l~~~~~dg~i~vwd~~--~----~~~~~~~~~~~~ 402 (556)
.|++.++++... ..+..|...+..+ ..+|||+.+++++.||.+++|.+- + ..+..|..+..+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 888877754332 2333454433333 268999999999999999998773 2 233455555534
Q ss_pred CeeEEEEccC-------CC--EEEEEeC-CCeEEEEECCCCe
Q 008717 403 RISDMAITDD-------GK--RIISICR-EAAILLLDREANF 434 (556)
Q Consensus 403 ~v~~v~~s~~-------g~--~l~~~~~-d~~I~i~d~~~~~ 434 (556)
+-.|.-|+.+ +. ++++++. +..+++|.....+
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 4444444432 22 2333332 3457788765554
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.29 E-value=10 Score=38.40 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCcEEEEEecCCCce--EEEEEecCCCeEEEEeCC
Q 008717 328 NDHQLLTCGQE-----------EAIRRWDVNSGECLHVYEKTGVGL--ISCGWFLDGGGIFAGMTD 380 (556)
Q Consensus 328 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~~~~~d 380 (556)
++...+.|+.+ ..+..||..+.+....-....... .++...-+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56666777653 247788887765433211111111 112221367777777754
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.20 E-value=2.4 Score=46.58 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 359 ~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
...|..+..+|+|.+++..|..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 45688889999999999988855 555554
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.80 E-value=9.5 Score=36.62 Aligned_cols=210 Identities=11% Similarity=0.078 Sum_probs=119.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECC------CCc-EEEEEec-----CCCceEEEEEecCCC------------eEE
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVN------SGE-CLHVYEK-----TGVGLISCGWFLDGG------------GIF 375 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~~-~~~~~~~-----~~~~v~~i~~~~~~~------------~l~ 375 (556)
-+.|+++|.+..-++....+...+||.. ..+ .+-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888888888899999986 122 2233331 124567777774332 267
Q ss_pred EEeCCCcEEEEECCC------CeEEEeecccCCCe-eEEEEcc--CCCEEEEEe-CCCeEEEEECCCCeeee----eec-
Q 008717 376 AGMTDKSICLWDLDG------RELESWKGQKTLRI-SDMAITD--DGKRIISIC-REAAILLLDREANFERW----IEE- 440 (556)
Q Consensus 376 ~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v-~~v~~s~--~g~~l~~~~-~d~~I~i~d~~~~~~~~----~~~- 440 (556)
.+++||+|.-|...- .....+.....+.| ..+++.. .+.+|..+. ..++|.+||-.-..... ...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788899999998531 12222221111233 3444443 345555443 56888888865433111 000
Q ss_pred ---------------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc--CceeEEE---EeecCCCCc
Q 008717 441 ---------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK--RARFVIR---SCFGGFEQA 500 (556)
Q Consensus 441 ---------------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~--~~~~~i~---~~~~s~~~~ 500 (556)
.-.|+-..-.++.+.=+.|..-|.|-+||... ..++++.... ..-+.+. ..|....|.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00111111122222222233346899999765 6777773221 2222222 356667788
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeecCCCcc
Q 008717 501 FIASGSEDSQNVPEILLSESVAAAASSLDNF 531 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 531 (556)
+|+.-=.||+|..+|..+++.+-.+...++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 8887667999999999988876666555543
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.45 E-value=3.8 Score=41.76 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCC--------CEEEEEeCCCcEEEEECCC-CcEE
Q 008717 283 DGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND--------HQLLTCGQEEAIRRWDVNS-GECL 352 (556)
Q Consensus 283 ~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~-~~~~ 352 (556)
|..+|. .|+....++--|++-+ +.+..+..|... -+.|.|+. ..|+ |-.+..|.-.|.+- |..+
T Consensus 478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce
Confidence 444444 3444455666666654 555666666664 46677742 3344 44455555556543 3222
Q ss_pred EEEec----CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 353 HVYEK----TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 353 ~~~~~----~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
...+. ......+..-. .+.++++++..|.|++||--+....+..+.-+..|..+..+.+|+++++.|. ..+.+.
T Consensus 552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred eeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 22221 11222232222 4568999999999999997665555555555558999999999999888765 467777
Q ss_pred ECC
Q 008717 429 DRE 431 (556)
Q Consensus 429 d~~ 431 (556)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 775
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=6.9 Score=41.94 Aligned_cols=187 Identities=9% Similarity=0.083 Sum_probs=91.7
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEE-EEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK-HRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
++.+..+--..+++-.+.|+.+..+ +....+|+++||++-.. ..... .-+......|..+.+..+|-.+++ .+|.
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~ 148 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQ 148 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCceE-EEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEEe--cCCc
Confidence 3444444434458889999987765 44568999999998722 11110 011222334555555555544443 4455
Q ss_pred EEEEECCCCcEEEEEec-CCCceEEEEEe--cCCC---eEEEEe-CCC-cEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 341 IRRWDVNSGECLHVYEK-TGVGLISCGWF--LDGG---GIFAGM-TDK-SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~-~~~~v~~i~~~--~~~~---~l~~~~-~dg-~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
+.+-+-.......++.. ......+.+|. +++. .++--. ..+ .+..-+........+...+ ..+..+.+||+
T Consensus 149 v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~-~~~~ki~VS~n 227 (829)
T KOG2280|consen 149 VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPN-SSVVKISVSPN 227 (829)
T ss_pred EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCC-ceEEEEEEcCC
Confidence 54433221112223322 11111112232 2211 111111 001 0111111122233333333 37889999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--eee-eecCCceEEEEEcCCC
Q 008717 413 GKRIISICREAAILLLDREANF--ERW-IEEEEVITSFSLSKDN 453 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~--~~~-~~~~~~i~~v~~sp~~ 453 (556)
.++|+.-..+|.|.+-+....+ ..+ .+...+...++|..+.
T Consensus 228 ~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 228 RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 9999999999999998877665 222 1223333366676444
No 454
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.27 E-value=10 Score=35.80 Aligned_cols=168 Identities=12% Similarity=-0.044 Sum_probs=94.2
Q ss_pred EEEEEecC-CCceEEEEEecCCCeEEEEeCCC--cEEEEECCCCeEEEeeccc-CCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 351 CLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 351 ~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
.+.++... ..-...+.|..+|..+-+.+.-| .|+.+|+.++++.....-. ..--..++...| +.....=.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEE
Confidence 45555533 33345677767888888888766 6999999987654433222 112234444433 3334445788999
Q ss_pred EEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCc--eeEEE-EeecCCCCcEE
Q 008717 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA--RFVIR-SCFGGFEQAFI 502 (556)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~--~~~i~-~~~~s~~~~~l 502 (556)
+||..+.+ .......+.-..++ .|++.|+.......|+++|..+. +...++....+. +..+. .-+ -+|...
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~--i~G~Iy 188 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY--INGKIY 188 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE--ETTEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE--EcCEEE
Confidence 99999877 43444445556666 46777777776788999998876 666666544332 11111 222 255555
Q ss_pred EEeeCCCcEEEEEcCCCceeee
Q 008717 503 ASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 503 ~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
|=.=....|..-|..+|++...
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEE
Confidence 5444556677777777777653
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.03 E-value=6.5 Score=42.63 Aligned_cols=145 Identities=8% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEE---EEEec----------------CCCCCeEEEEeCC--CCCEEEEEeCCCcEE
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSL---KHRLS----------------GHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~---~~~~~----------------~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 342 (556)
..+++.|. .+.|.||+...-..... ...+. .....|+.+.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666664 67999999863222110 00110 0112344444432 456889999999999
Q ss_pred EEECCC-------C----c---------EEEEEecCCCceEEEEEe--cCCCeEEEEeCCCcEEEEECCC--CeE-EEee
Q 008717 343 RWDVNS-------G----E---------CLHVYEKTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLDG--REL-ESWK 397 (556)
Q Consensus 343 iwd~~~-------~----~---------~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~vwd~~~--~~~-~~~~ 397 (556)
+|.+++ . + +-..+ .-...+++++++ ...++||+++....|.||-... .+. ..-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 0 0 11111 124578999998 7788888888888888775532 111 1111
Q ss_pred cccCCCeeEEEEccCC---C---EEEEEeCCCeEEEEEC
Q 008717 398 GQKTLRISDMAITDDG---K---RIISICREAAILLLDR 430 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~g---~---~l~~~~~d~~I~i~d~ 430 (556)
..+...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1233479999997753 2 7888899999999887
No 456
>PRK13684 Ycf48-like protein; Provisional
Probab=91.95 E-value=14 Score=36.70 Aligned_cols=237 Identities=10% Similarity=0.056 Sum_probs=111.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC-eeEEEE-EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKH-RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~-~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
...+.+++|..+.+-+|+|. +|. ||...+++ ..+... .+......+.++.|.++ ..+++ +..+.|..- .+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666666664 443 44443332 222211 11112334677887643 33443 444443332 2233
Q ss_pred cEEEEEe---cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 350 ECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 350 ~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
+.-..+. ........+....++. +..++..|.|..=+=.++.-..........+.++.+.|++.+++++ ..|.+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~ 196 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFY 196 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEE
Confidence 3222221 0111122222222232 3333444544332222333233333334478999999998766554 445544
Q ss_pred E-EECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc-c-CceeEEEEeecCCCCcE
Q 008717 427 L-LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-K-RARFVIRSCFGGFEQAF 501 (556)
Q Consensus 427 i-~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~-~-~~~~~i~~~~~s~~~~~ 501 (556)
. +|-.... .........++++.+.++++.++++. .|.+.+=....+ ..-.....+ . .......+.+ .+++..
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~-~~~~~~ 273 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAY-RTPGEI 273 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-CccccccCCccccccceeeEEE-cCCCCE
Confidence 3 2322222 22233456789999999998877764 676643223333 222221111 0 1111222445 667765
Q ss_pred EEEeeCCCcEEEEEcCCCce
Q 008717 502 IASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~ 521 (556)
++ ++.+|.|+. ....++-
T Consensus 274 ~~-~G~~G~v~~-S~d~G~t 291 (334)
T PRK13684 274 WA-GGGNGTLLV-SKDGGKT 291 (334)
T ss_pred EE-EcCCCeEEE-eCCCCCC
Confidence 54 556776653 4444443
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.92 E-value=2.9 Score=39.17 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=86.9
Q ss_pred EEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC---CeEEEEECCC-Ce-ee------eeecCCceEEEEEcC
Q 008717 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE---AAILLLDREA-NF-ER------WIEEEEVITSFSLSK 451 (556)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---~~I~i~d~~~-~~-~~------~~~~~~~i~~v~~sp 451 (556)
-.+||+.+++++.+.........+-++.+||+++.+|+.. ..+++++... .. .. ......+-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578998887776665554445555778999999988752 3588888765 11 11 123344555667778
Q ss_pred CCCEEEEEEcCC-eEEEEEcCCC-CcceeE--EeC----ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 452 DNKYLLVNLINQ-EIHLWSIESD-PKLVSR--YKG----HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 452 ~~~~l~~~~~dg-~I~lwd~~~~-~~~~~~--~~~----~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
||+.|++|+.+. +..+|.-... ...... +.. ....-+- ..+.-|+|++++.+..+. .|||..+.+.+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 999999988764 3555554221 011111 110 1111121 445578999998887765 466888887765
Q ss_pred eecCCCc
Q 008717 524 AASSLDN 530 (556)
Q Consensus 524 ~~~~~~~ 530 (556)
......+
T Consensus 204 ~lP~lPg 210 (243)
T PF07250_consen 204 TLPDLPG 210 (243)
T ss_pred eCCCCCC
Confidence 5555444
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.87 E-value=3.7 Score=44.43 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCCeEEEEeCCCcEEEEECCC-------C--eEE----------EeecccCCCeeEEEEc--cCCCEEEEEeCCCeEEEE
Q 008717 370 DGGGIFAGMTDKSICLWDLDG-------R--ELE----------SWKGQKTLRISDMAIT--DDGKRIISICREAAILLL 428 (556)
Q Consensus 370 ~~~~l~~~~~dg~i~vwd~~~-------~--~~~----------~~~~~~~~~v~~v~~s--~~g~~l~~~~~d~~I~i~ 428 (556)
+...|+.+..||.|.+|.++. . ... .+...-...++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 556788899999999997731 1 000 0111122368899998 777888888888888877
Q ss_pred ECCCC--e---eeeeecCCceEEEEEcCCC---C---EEEEEEcCCeEEEEEc
Q 008717 429 DREAN--F---ERWIEEEEVITSFSLSKDN---K---YLLVNLINQEIHLWSI 470 (556)
Q Consensus 429 d~~~~--~---~~~~~~~~~i~~v~~sp~~---~---~l~~~~~dg~I~lwd~ 470 (556)
-.... + .....+...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65442 2 2233467789999997743 2 7788888999999888
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.54 E-value=1.5 Score=40.65 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=49.0
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCeeeee----------------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 409 ITDDGKRIISICREAAILLLDREANFERWI----------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 409 ~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~----------------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
+..++.++++.+.+|.+++||+.+.+..+. .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 445688999999999999999998872111 2456788999998988776655 68889998754
Q ss_pred C
Q 008717 473 D 473 (556)
Q Consensus 473 ~ 473 (556)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.52 E-value=15 Score=36.56 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe----cCCCceEEEEEecC---CCeEEEEeC-C--------
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC---LHVYE----KTGVGLISCGWFLD---GGGIFAGMT-D-------- 380 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~i~~~~~---~~~l~~~~~-d-------- 380 (556)
.+.|+|.|||+.+++ ...|.|++++ ..+.. +..+. ........++++|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999877665 6699999999 44543 22221 23456799999994 334444332 1
Q ss_pred CcEEEEECCCC--e------EE-Eeec--ccCCCeeEEEEccCCCEEEEEeC
Q 008717 381 KSICLWDLDGR--E------LE-SWKG--QKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 381 g~i~vwd~~~~--~------~~-~~~~--~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
..|.-|..... . +. .... ...+.-..|+|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13444444322 1 11 1111 12235778999999976666544
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.49 E-value=0.18 Score=54.18 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=89.3
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECC--CCcEE-----EEEecCCCceEE
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN--SGECL-----HVYEKTGVGLIS 364 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~v~~ 364 (556)
.+-+++-+..+.-. ....+++..+.|-.+.|.. +...+. -.-|.+.+||++ .|+.. .........+.-
T Consensus 110 ~~~vrvaN~~~sm~--~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR--HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhH--HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcce
Confidence 34566665543210 0122456677787888743 222222 223678899875 34432 222233444555
Q ss_pred EEEec---CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecC
Q 008717 365 CGWFL---DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEE 441 (556)
Q Consensus 365 i~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~ 441 (556)
+.|.| +.-++..+..++.|++.++++.....+.. |..++..++|-..|-.++.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rs-Hs~~~~d~a~~~~g~~~l~~---------------------- 242 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRS-HSQRVTDMAFFAEGVLKLAS---------------------- 242 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHHHHHHh-cCCCcccHHHHhhchhhhee----------------------
Confidence 56655 55666677778888888776533322333 55577777765554322211
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEEcC-----CCCcceeEEeCccCc
Q 008717 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIE-----SDPKLVSRYKGHKRA 486 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~-----~~~~~~~~~~~~~~~ 486 (556)
+||||..++..+.||.++.|-+. .. .++...+.|...
T Consensus 243 -------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~-rclhewkphd~~ 284 (1283)
T KOG1916|consen 243 -------LSPDGTVFAWAISDGSVGFYQIYITGKIVH-RCLHEWKPHDKH 284 (1283)
T ss_pred -------eCCCCcEEEEeecCCccceeeeeeeccccH-hhhhccCCCCCC
Confidence 77888888888888876666552 22 455666666643
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=3.8 Score=41.88 Aligned_cols=93 Identities=5% Similarity=-0.011 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeee
Q 008717 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI 438 (556)
Q Consensus 360 ~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~ 438 (556)
-.|..+..++.|..++..+.+|.+.++=.+ -+.-..+..+.. .|+|=.+.-+.+ +++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~-~v~CRt~~i~~~-~ftss------------------ 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKS-TVNCRTTPVAER-FFTSS------------------ 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCc-eEEEEeecccce-eeccC------------------
Confidence 346777788899999999988865543222 122222222221 455544443332 22221
Q ss_pred ecCCceEEEEEcCCC---CEEEEEEcCCeEEEEEcCCC
Q 008717 439 EEEEVITSFSLSKDN---KYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~---~~l~~~~~dg~I~lwd~~~~ 473 (556)
..-.+..++|+|+. ..|+.-++|+.|++||+...
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 12235678899975 67778888999999999876
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.30 E-value=0.74 Score=29.84 Aligned_cols=30 Identities=3% Similarity=0.090 Sum_probs=18.7
Q ss_pred CeeEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 008717 403 RISDMAITDDG---KRIISICREAAILLLDREA 432 (556)
Q Consensus 403 ~v~~v~~s~~g---~~l~~~~~d~~I~i~d~~~ 432 (556)
.|.++.|+|+. .+|+.+-..+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46667777533 3566666666677777664
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.25 E-value=0.99 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCC---CEEEEEeCCCcEEEEECCCC
Q 008717 318 KPVFTVSWSPND---HQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 318 ~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~ 349 (556)
++|.+++|||++ .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888777899999999853
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=8.2 Score=44.25 Aligned_cols=224 Identities=12% Similarity=0.020 Sum_probs=103.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC----CeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
....++|+|.-.++|.|+.+|.|+++-...- +. ...|.. .+..+.|-...........+..+.+|.....
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v---e~---~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 110 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV---EF---VGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIK 110 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce---EE---Eeccccccchhhhheeeeecccccceeecccceeeeccccc
Confidence 4557889999999999999999999976521 11 111211 1111112111112223333445556654322
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCee--E-EEEccCCCE-EEEEeCCCeE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS--D-MAITDDGKR-IISICREAAI 425 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~-v~~s~~g~~-l~~~~~d~~I 425 (556)
..+. ....+++..-.+--.+ ..+ ..+.+++||........+......... - ...++.-.. ......+ -
T Consensus 111 ~~~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~ 182 (993)
T KOG1983|consen 111 TGVF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLD--T 182 (993)
T ss_pred ceee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccc--c
Confidence 2111 1222333322222223 444 778888888754332222211100000 0 000000000 0000000 0
Q ss_pred EEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe
Q 008717 426 LLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (556)
Q Consensus 426 ~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg 505 (556)
.+|-+.........+..++.+..+....... .+...+.+-+|+.... .....+...... . +.++..++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~-~~~~~~~v~~ 252 (993)
T KOG1983|consen 183 VLISLPDAYLGLSLIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASK-YVQSAYLPNGQL-------E-SRDGSHFVSY 252 (993)
T ss_pred ceeecccccccccccccccceeeeecCCCcc-eeeeeeeeeehhcccc-cchhhccccccc-------C-ccCCceEEEE
Confidence 1111110001222234445555554444433 3333566667765443 333333322221 1 6789999999
Q ss_pred eCCCcEEEEEcCCCce
Q 008717 506 SEDSQNVPEILLSESV 521 (556)
Q Consensus 506 s~dg~v~iwd~~~~~~ 521 (556)
..||.+.+||...+++
T Consensus 253 h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 253 HTDGSYAFWDVSSGKL 268 (993)
T ss_pred EecCCEEeeecCCCce
Confidence 9999999999999876
No 466
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.11 E-value=18 Score=36.16 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCcEEEEEecCCCceEE--EEEecCCCeEEEEeCC
Q 008717 328 NDHQLLTCGQE-----------EAIRRWDVNSGECLHVYEKTGVGLIS--CGWFLDGGGIFAGMTD 380 (556)
Q Consensus 328 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~--i~~~~~~~~l~~~~~d 380 (556)
+++..+.|+.+ ..+..||..+.+-...-......... .+..-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56677777653 24778888776543321111111111 1112367777877754
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.79 E-value=22 Score=36.75 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=63.5
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe----c-CCCCCeEEEEeCCCC------CEEEEEe
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----S-GHRKPVFTVSWSPND------HQLLTCG 336 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~----~-~h~~~v~~l~~s~~~------~~l~s~~ 336 (556)
+-..-...+.|+|.|||++|++--..|.|++++..+... .....+ . ...+....|+++|+- .+|....
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 334456789999999998887765569999987553321 122111 1 135678899999874 2444432
Q ss_pred ----------CCCcEEEEECCCC--c---EEEEEecC----CCceEEEEEecCCCeEEEEeCC
Q 008717 337 ----------QEEAIRRWDVNSG--E---CLHVYEKT----GVGLISCGWFLDGGGIFAGMTD 380 (556)
Q Consensus 337 ----------~dg~i~iwd~~~~--~---~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~d 380 (556)
....|.-|.+... . ....+... ...-..+.|.|||.++++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223555554321 1 11122211 1123467899999877765543
No 468
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=90.69 E-value=0.5 Score=35.54 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccC
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~ 95 (556)
=++-||-.||+-+||+.|+.+|+-|+|.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 4688999999999999999999999998744
No 469
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.65 E-value=14 Score=34.06 Aligned_cols=132 Identities=10% Similarity=0.066 Sum_probs=82.3
Q ss_pred CCeEEEEeCCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEE-EeCCCcEEEEE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQE---------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWD 387 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~vwd 387 (556)
.....-..+|+|++++-.-.| |.++.|-.. + .+..+...-.--+.++|+.+.+.+.. -+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345566778999985433222 445555432 2 22222222233456889887776654 45566787787
Q ss_pred --CCCCe------EEEeec---ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcC
Q 008717 388 --LDGRE------LESWKG---QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK 451 (556)
Q Consensus 388 --~~~~~------~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp 451 (556)
..++. +..+.. ........+++..+|++.++.-..++|...|..+++ ..+.-....|+|++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44422 222221 112234567777889988888889999999999999 55555688899999964
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.11 E-value=12 Score=40.46 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=52.5
Q ss_pred EEEEEecCCCeEEEEeCCC-----cEEEEECCC---CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 363 ISCGWFLDGGGIFAGMTDK-----SICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
..+.|-|+|..+++-..|| .|.++.-++ ++... .......+..++|+-....++. ...+.|.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-r~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-RVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-cCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence 4578999999999977655 355555443 22211 1111224566677665544433 456789999887765
Q ss_pred --eeeeecCCceEEEEEcCCC
Q 008717 435 --ERWIEEEEVITSFSLSKDN 453 (556)
Q Consensus 435 --~~~~~~~~~i~~v~~sp~~ 453 (556)
......-..+.-+.|+|..
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEeecCCCcceeeecccc
Confidence 2222233446667888854
No 471
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.82 E-value=4.6 Score=41.09 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=62.5
Q ss_pred CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE-EEeC-CC---------
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWS-PN--------- 328 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s-~~--------- 328 (556)
.|......+......+.+++.+|++++.|+...=|.|.++|+.++ ..++.+++-.++=.. +... +.
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~---~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG---IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC---hhhhhhccCccceEEEEEeecccccccccccc
Confidence 344556677778888999999999999888888899999999865 233334443332110 0000 00
Q ss_pred ------CC--EEEEEeCCCcEEEEECCCCcEEEEEec
Q 008717 329 ------DH--QLLTCGQEEAIRRWDVNSGECLHVYEK 357 (556)
Q Consensus 329 ------~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 357 (556)
.. +++-+-.-|.|.||++++|..+..+..
T Consensus 372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 01 223345578999999999988877764
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.75 E-value=33 Score=37.05 Aligned_cols=159 Identities=13% Similarity=0.192 Sum_probs=84.3
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEec-CCC-ceEEEEEecC------CCeEEEEeC-CC---c
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVYEK-TGV-GLISCGWFLD------GGGIFAGMT-DK---S 382 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~-~~~-~v~~i~~~~~------~~~l~~~~~-dg---~ 382 (556)
...|..+.|.++++.+++.-.+|.|.+||...+.. +..+.. +.. -+.+ .|-++ ..++++-+. ++ .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 57899999999999999999999999999933321 112211 111 1111 22221 234444333 22 4
Q ss_pred EEEEEC--CCCeEEEee--cccCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCe-eeeee------cC-CceEEEEE
Q 008717 383 ICLWDL--DGRELESWK--GQKTLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWIE------EE-EVITSFSL 449 (556)
Q Consensus 383 i~vwd~--~~~~~~~~~--~~~~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~-~~~~~------~~-~~i~~v~~ 449 (556)
.+++.+ ++..+.... ..+........|.- +|. +..- .++.|.+|++...+ ...+. .. ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~- 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK- 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-
Confidence 667777 443333332 11111233333333 444 3332 67899999998766 22221 11 2233332
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 450 sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.|..+.++.+. ++.|++.|+.-. ..+..+.
T Consensus 285 ~~s~nRvLLs~-~nkIyLld~~~~-siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV-NNKIYLLDLKFE-SILSEFE 314 (670)
T ss_pred cCCCCeEEEEc-CCEEEEEeehhh-hhhhhhh
Confidence 22333344433 678999998765 4454443
No 473
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.57 E-value=0.044 Score=54.82 Aligned_cols=147 Identities=15% Similarity=0.209 Sum_probs=96.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE-EEeCCCcEEEEECCCCcEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~ 352 (556)
......|-|.+.-++.++.+..+..||-... ..... ..++....++|..++..++ .+-..+.+.+||+.+...
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq----~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ----VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcc----eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence 3345667887777888888889999987632 11222 2345567788888776554 445678999999975432
Q ss_pred EEEe-cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 353 HVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 353 ~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
..++ +....-.-..|++....++.+...|.+.+++..+.......+.|..+++++++.+.+. .+.++.|..+.+
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 1222 1111112267999888999999999999999876554444554555899999999865 444445544433
No 474
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.35 E-value=42 Score=37.78 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=100.5
Q ss_pred cEEEEECCCCcEEEEEecCC----CceEEEEEecCCC--eEEEEe-----------CCCcEEEEECC-CCeEEEeecccC
Q 008717 340 AIRRWDVNSGECLHVYEKTG----VGLISCGWFLDGG--GIFAGM-----------TDKSICLWDLD-GRELESWKGQKT 401 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~~--~l~~~~-----------~dg~i~vwd~~-~~~~~~~~~~~~ 401 (556)
.|++.|..+++.+..+.... -.+..+.|+.... ++++|. .+|.++.|++- .+.-..+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37788887777666554332 2455666665333 333332 23457777762 222112222221
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 402 LRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
-.-.-.++.|...++++| -...+++||+...+ .........|+++.+. +..+++|...-.+.++-.+...+.+
T Consensus 934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 122234556766666554 56799999998876 1222235567777774 6678888776666665554433566
Q ss_pred eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
..+....-+.++..+.+ -|...+|.+..=|.+.+-.+...
T Consensus 1011 ~~fadD~~pR~Vt~~~~--lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALEL--LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEEeCCCccceeeEEEE--ecCCceeeccccCcEEEEECCCc
Confidence 77766666666654544 35566777777777777665543
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.32 E-value=26 Score=35.35 Aligned_cols=195 Identities=11% Similarity=0.125 Sum_probs=97.0
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-Cc
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VG 361 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 361 (556)
+|+ +..+..+|.|.-.|..++... -...+......+..-.+..+|+ |+.++.++.+...|.++|+.+....... ..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEE-ecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 443 444467777777777655311 0001110011222222222565 7778889999999998999888777655 11
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc---CCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCeee
Q 008717 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK---TLRISDMAITDDGKRIISICR--EAAILLLDREANFER 436 (556)
Q Consensus 362 v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~~~ 436 (556)
+.......+ ..++.++.++.+...|..++...-..... ...+..-....+ ..++.+.. ++.+.-.|..++...
T Consensus 145 ~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEe
Confidence 111222223 34444446788888888765543222111 101111111222 34444444 566777777776621
Q ss_pred ee---ecC---CceEEEEEcCC-----CCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 437 WI---EEE---EVITSFSLSKD-----NKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 437 ~~---~~~---~~i~~v~~sp~-----~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
.. .+. ..+........ +.-+..++.++.+...|..++ +.+..+...
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G-~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG-ELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC-ceEEEEecc
Confidence 11 011 10100111111 122355666777888888888 777766653
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=3.5 Score=46.86 Aligned_cols=134 Identities=13% Similarity=0.237 Sum_probs=85.1
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEE--------ecCCCeEEEEeCCCcEEEEECC----CCeEEEee-----c
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--------FLDGGGIFAGMTDKSICLWDLD----GRELESWK-----G 398 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--------~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~-----~ 398 (556)
+.|..+.+|+.+++.....+.+-...|..+.. -|.=+++++-+.--.|.++-+. +.....+. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45778999999997777777766666655543 2333444444444556666542 11111111 1
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEEC----CCCe----------------------eeee-ecCCceEEEEEcC
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDR----EANF----------------------ERWI-EEEEVITSFSLSK 451 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~----~~~~----------------------~~~~-~~~~~i~~v~~sp 451 (556)
.....|+|+....+|+.+++| .||. +|.+ ..+- ..+. .+..+|..+++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 123378999988999877775 4553 4433 1110 1112 3466899999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 008717 452 DNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 452 ~~~~l~~~~~dg~I~lwd~~~ 472 (556)
....+.+-+..|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999976
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.20 E-value=25 Score=34.87 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=66.4
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCc------EEEEEeecC----CeeEEE--EEecCCCC--------CeEEEEeCCCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQS------AIIWEVKED----GQVSLK--HRLSGHRK--------PVFTVSWSPNDH 330 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~------i~iwd~~~~----~~~~~~--~~~~~h~~--------~v~~l~~s~~~~ 330 (556)
.-+.+..+.+.+++..+++.+.+|. +..+++... ...... ..+..-.+ ..-++++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3456788999876666666677777 655555431 111111 11222222 234778877888
Q ss_pred EEEEEeCC------CcEEEEECCCCcEEEEEe---------------cCCCceEEEEEecCCCeEEEEeC
Q 008717 331 QLLTCGQE------EAIRRWDVNSGECLHVYE---------------KTGVGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 331 ~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~l~~~~~ 379 (556)
++++.-.+ ..|..++.. |+....+. ..+..+-+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88877666 778888876 66544431 13456889999999997776543
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=21 Score=34.03 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=125.4
Q ss_pred EccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe
Q 008717 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC---LHVYE 356 (556)
Q Consensus 280 ~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~ 356 (556)
|.-.|++...+..|.-+.+.|+.+.....+.-.+......-..++.| |++-..+..|+-+.+.|+..... +....
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n 211 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN 211 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe
Confidence 33458888888767778888998766655666665555555667776 77778888999999999976532 22222
Q ss_pred cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-ccCCCeeEE-EEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDM-AITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 357 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v-~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
....+.++..+++-.+++. .+--+.+-|..+..-....+ .....+.++ .+.-.+++......+.-+-+-|..+..
T Consensus 212 -~g~g~~sv~vsdnr~y~vv--y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 212 -TGPGTYSVSVSDNRAYLVV--YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred -cCCceEEEEecCCeeEEEE--cccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 1235677766655444443 33446677776543222221 111123332 233345666666667777777776654
Q ss_pred -eeeee----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 435 -ERWIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 435 -~~~~~----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
..+.. .......+..+ +.++..+..+ ...+.+.... +......+...- +..|-.+-+.+.+.+...++
T Consensus 289 spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~-s~m~~~~g~~ti---~~s~~v~~~~q~~y~~d~~~ 361 (370)
T COG5276 289 SPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPP-SMMDKRPGRPTI---GQSCDVSVDTQIIYSTDYNG 361 (370)
T ss_pred CCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCCh-hhcccccCcceE---eeecceEEEeeEEEEeecCC
Confidence 11111 11123334443 4555555544 4455565443 322222222211 11222233556788888899
Q ss_pred cEEEEEcC
Q 008717 510 QNVPEILL 517 (556)
Q Consensus 510 ~v~iwd~~ 517 (556)
-+.||+..
T Consensus 362 gl~i~~~~ 369 (370)
T COG5276 362 GLSIIEYL 369 (370)
T ss_pred CEEEEEec
Confidence 99999864
No 479
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.03 E-value=3.3 Score=38.36 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=47.2
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCeEEEee-------c-------ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWK-------G-------QKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
+..+++++++-+.+|.+++||+.+++..... . .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999875442211 1 2334688888888887666654 46778888665
Q ss_pred Ce
Q 008717 433 NF 434 (556)
Q Consensus 433 ~~ 434 (556)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 54
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.96 E-value=2.2 Score=45.73 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=46.2
Q ss_pred cCCCEEEEEeCCCcEEEEEeec---CCeeEEEEEecC--------------------CCCCeEEEEeCC----CCCEEEE
Q 008717 282 HDGKYLASSSKDQSAIIWEVKE---DGQVSLKHRLSG--------------------HRKPVFTVSWSP----NDHQLLT 334 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~---~~~~~~~~~~~~--------------------h~~~v~~l~~s~----~~~~l~s 334 (556)
++...++.+..||.+....... .+..-....+.. ..+.+..++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888887764 111101111111 123456667766 7789999
Q ss_pred EeCCCcEEEEECCCCcEEEEEe
Q 008717 335 CGQEEAIRRWDVNSGECLHVYE 356 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~ 356 (556)
.+.|+++++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 481
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.89 E-value=27 Score=39.23 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=81.3
Q ss_pred CCCcceeEEecc---cCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCC----------CeEE
Q 008717 259 RIPSQTLQILEA---HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRK----------PVFT 322 (556)
Q Consensus 259 ~~~~~~~~~l~~---h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~----------~v~~ 322 (556)
.+...++..+.. -..+...++|+| +...||.....|.-.||++....+ .........+.+ .-..
T Consensus 129 ~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~r 208 (765)
T PF10214_consen 129 RIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKR 208 (765)
T ss_pred ccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCccee
Confidence 344455555553 234678899999 566899999999999999931111 011111111112 2347
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCcEEE-E-EecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCC
Q 008717 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-V-YEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDG 390 (556)
Q Consensus 323 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~-~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~ 390 (556)
+.|.++-+.|+.++.. .+.++|+++..... . .......|..+.-+|+ +..|+..+ ..|...|+..
T Consensus 209 I~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 209 ILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred eEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 8898888888887764 78999998876533 2 2234567888888776 33333333 5788888865
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.78 E-value=26 Score=34.66 Aligned_cols=142 Identities=14% Similarity=0.243 Sum_probs=85.3
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCc------EEEEECCC--C--cEEE-----EEecCCC--------ceEEEEEecCCCe
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEA------IRRWDVNS--G--ECLH-----VYEKTGV--------GLISCGWFLDGGG 373 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~------i~iwd~~~--~--~~~~-----~~~~~~~--------~v~~i~~~~~~~~ 373 (556)
-+.++.+.+.+++..+++.+.+|. +...++.. + ..+. .+....+ ..-++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788888876666777777777 65555543 1 1111 1111111 3447888778888
Q ss_pred EEEEeCC------CcEEEEECCCCeEEEee--------------cccCCCeeEEEEccCCCEEEEEeC-----CC-----
Q 008717 374 IFAGMTD------KSICLWDLDGRELESWK--------------GQKTLRISDMAITDDGKRIISICR-----EA----- 423 (556)
Q Consensus 374 l~~~~~d------g~i~vwd~~~~~~~~~~--------------~~~~~~v~~v~~s~~g~~l~~~~~-----d~----- 423 (556)
+++.-.+ ..|..++.++.....+. ........+|+++|+|+.|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 7777677 78999998754332221 112336889999999996666543 21
Q ss_pred ------eEEEEECCC-Ce----eeee-e------cCCceEEEEEcCCCCEEEE
Q 008717 424 ------AILLLDREA-NF----ERWI-E------EEEVITSFSLSKDNKYLLV 458 (556)
Q Consensus 424 ------~I~i~d~~~-~~----~~~~-~------~~~~i~~v~~sp~~~~l~~ 458 (556)
.|..||..+ +. ..+. . ....|+.+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 21 1111 1 3467889999999987764
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.49 E-value=12 Score=38.58 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.2
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
.|..+..++.|..++-.|.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788889999999888888766543
No 484
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.40 E-value=9.9 Score=41.06 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=45.0
Q ss_pred eeEEEEccCCCEEEEEeCCC-----eEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 404 ISDMAITDDGKRIISICREA-----AILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~-----~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
-..+.|-|+|..+++...|| .|.++....-. ....+....+..++|+-....++++. .+.|++|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 34589999999999877554 36666654433 12234455567777876665555544 667999987654
No 485
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.95 E-value=3.3 Score=41.51 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=96.9
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC----eE-EEEeCCCCCEEEEEeCCC
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP----VF-TVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~----v~-~l~~s~~~~~l~s~~~dg 339 (556)
+..+..-...|..+-..|||+.|..-+. .++.|+++.+. ..+..+......+. |+ .+..-..|..++.++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r-~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKR-SLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeeccc-ccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 3345556677888899999998877654 68889988742 22221222221221 11 111223466788889999
Q ss_pred cEEEE-ECCC-Cc----EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCC
Q 008717 340 AIRRW-DVNS-GE----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 340 ~i~iw-d~~~-~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
-|.-| |++. +. .++.++-...++.-+.-..+.+-+++-+.+|++.++.....+..-....-. .+.-+++||.+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCccc
Confidence 98887 4432 22 122233223333333222234557777788888877654433322222222 57788999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe
Q 008717 414 KRIISICREAAILLLDREANF 434 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~ 434 (556)
.++++ -..|.|+++.+++..
T Consensus 370 ~~Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 370 AYLLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred chhee-ecCCceEEEEecCCC
Confidence 98877 355789998887653
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.63 E-value=53 Score=36.87 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=93.9
Q ss_pred CCCCCeEEEEeC---C----CCCEEEEEeCCCcEEEEECC------C---------CcEEEEEec---CCCceEEEEEec
Q 008717 315 GHRKPVFTVSWS---P----NDHQLLTCGQEEAIRRWDVN------S---------GECLHVYEK---TGVGLISCGWFL 369 (556)
Q Consensus 315 ~h~~~v~~l~~s---~----~~~~l~s~~~dg~i~iwd~~------~---------~~~~~~~~~---~~~~v~~i~~~~ 369 (556)
....+|..|+|+ . ..++|++-. ...+.|+... . ..++..+.. .+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788889988 2 223555543 3456666611 1 022333332 245678899998
Q ss_pred -CCCeEEEEeCCCcEEEEECCC-----CeEEEeecccCC----------CeeEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 008717 370 -DGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTL----------RISDMAITDDGKRIISICREAAILLLDREAN 433 (556)
Q Consensus 370 -~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~----------~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~ 433 (556)
+...|++....|...|||+.. ...........+ .-..+.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 567899999999999999921 111111111111 2347788888777777644 57899999987
Q ss_pred e-ee-ee--ecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCC
Q 008717 434 F-ER-WI--EEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 434 ~-~~-~~--~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~ 472 (556)
. .. +. .....|..+.-+|.. .++++-+ ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 6 22 22 234678888888872 2333322 45687888876
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.40 E-value=39 Score=35.03 Aligned_cols=105 Identities=16% Similarity=0.244 Sum_probs=60.7
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEe-----cCCCceEEEEEecCC------CeEEEEe------
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVYE-----KTGVGLISCGWFLDG------GGIFAGM------ 378 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~v~~i~~~~~~------~~l~~~~------ 378 (556)
..-+.++|.|||+.|++--..|.|++++..++.. +..+. ........++++|+- .+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4567899999998777655469999998655432 11111 135678899999873 3444442
Q ss_pred ----CCCcEEEEECCC--Ce---EEEee-c---ccCCCeeEEEEccCCCEEEEEeCC
Q 008717 379 ----TDKSICLWDLDG--RE---LESWK-G---QKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 379 ----~dg~i~vwd~~~--~~---~~~~~-~---~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
....|.-|.+.. .. ...+. . ...+.-..|+|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 123455555431 11 11111 1 111245678899999876655443
No 488
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.17 E-value=37 Score=34.59 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=73.6
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-e---ee
Q 008717 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E---RW 437 (556)
Q Consensus 363 ~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~---~~ 437 (556)
..+...+|+..++.+..-..++-||- +... ..........+..+.+.+++..++++ .+|.+..= ...+. . .+
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~-G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f 318 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP-GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDF 318 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC-CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccce
Confidence 34455566666665554322233332 2221 22222333478999999999877665 55655432 22222 1 12
Q ss_pred ee-----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe---CccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 438 IE-----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK---GHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 438 ~~-----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
.. ....++++.|.+++..+++|. .|.+.... ..+ +.-.... .-....+ ++.| .++++. +..+.+|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly--~v~f-~~~~~g-~~~G~~G 391 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGG-KSWKRDKGADNIAANLY--SVKF-FDDKKG-FVLGNDG 391 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCC-cceeEccccCCCCccee--EEEE-cCCCce-EEEeCCc
Confidence 21 223588999998887666654 77665553 333 3333322 1122333 4555 444444 4456788
Q ss_pred cEEEE
Q 008717 510 QNVPE 514 (556)
Q Consensus 510 ~v~iw 514 (556)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77654
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.16 E-value=34 Score=34.10 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=20.6
Q ss_pred CcEEEEECCCCcEEEE--EecCCCceEEEEEecCCCeEEEEeCC
Q 008717 339 EAIRRWDVNSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTD 380 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d 380 (556)
..+.+||..+.+-... +......-.+++ ..+++.++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 4588899877654332 211111112222 2367777777753
No 490
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=86.82 E-value=32 Score=34.20 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=34.8
Q ss_pred eCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcC--CeEEEE
Q 008717 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN--QEIHLW 468 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~d--g~I~lw 468 (556)
..+|.+.-||..+.. ..+...-.-.+.++.|||+.+++++-.. ...+.|
T Consensus 196 ~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 356888889988877 4555555567889999999998887432 334555
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.81 E-value=37 Score=34.16 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=109.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEe----cCCCe--EEEEe-CC---CcEEEEECC--CCeEEE
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF----LDGGG--IFAGM-TD---KSICLWDLD--GRELES 395 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~----~~~~~--l~~~~-~d---g~i~vwd~~--~~~~~~ 395 (556)
...+|+....++-+.+||+. |+.+..+.. +.++.+..- -+|+. |++++ .+ ..|++|-+. ++.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45678888888899999985 666666642 334444332 23443 33443 32 469999775 455544
Q ss_pred eecc------cCCCeeEEEEc--c-CCC-EEEEEeCCCeEEEEECC---CCe-----eeeeecCCceEEEEEcCCCCEEE
Q 008717 396 WKGQ------KTLRISDMAIT--D-DGK-RIISICREAAILLLDRE---ANF-----ERWIEEEEVITSFSLSKDNKYLL 457 (556)
Q Consensus 396 ~~~~------~~~~v~~v~~s--~-~g~-~l~~~~~d~~I~i~d~~---~~~-----~~~~~~~~~i~~v~~sp~~~~l~ 457 (556)
+... ....++.+|+- + +|. +.+....+|.+.-|-+. .+. .+.+.....+..+.......+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 4321 11246777774 3 355 56667788988888765 222 34445567889999999889999
Q ss_pred EEEcCCeEEEEEcCCC----CcceeEEeC--ccCceeEEEEeecCCC--CcEEEEeeCCCcEEEEEcCC
Q 008717 458 VNLINQEIHLWSIESD----PKLVSRYKG--HKRARFVIRSCFGGFE--QAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~----~~~~~~~~~--~~~~~~~i~~~~~s~~--~~~l~sgs~dg~v~iwd~~~ 518 (556)
.+-++.-|.-|+.+.. ...+....+ ....+..+.+.. ..+ |-+|+|.-.+++..||+...
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~-~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYY-GSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE--CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEe-cCCCCeEEEEEcCCCCeEEEEecCC
Confidence 9999988888887522 122322222 234555665555 333 33555555688999999875
No 492
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.75 E-value=3.6 Score=32.09 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 008717 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQK 140 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~ 140 (556)
++++++-++++ ||+-.| ...-.++|.|+.+-+. .|+.|+++..+..-...+ .. --|-+.+
T Consensus 42 Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYptv----------R~kld~vlramgy~p~~e-~~-----~~i~~~~ 101 (122)
T COG3877 42 LTSDQLEFVEL-FLRCRG---NLKEVERELGISYPTV----------RTKLDEVLRAMGYNPDSE-NS-----VNIGKKK 101 (122)
T ss_pred cCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHHH----------HHHHHHHHHHcCCCCCCC-Ch-----hhhhHHH
Confidence 46777666665 777777 6778899999998766 466666555444322211 12 2377888
Q ss_pred HHHHHhcCC--hHHHHHHHh
Q 008717 141 FLELLRRDK--VSAALNSLR 158 (556)
Q Consensus 141 ~~ell~~~~--~~~a~~~L~ 158 (556)
.+.+++.|+ .++|+..|+
T Consensus 102 i~~qle~Gei~peeA~~~L~ 121 (122)
T COG3877 102 IIDQLEKGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHcCCCCHHHHHHHhc
Confidence 999999988 567888776
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.71 E-value=22 Score=34.21 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=59.5
Q ss_pred CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe------CCCeEEEEECCCCe-eeeee-----cCCceEEEE
Q 008717 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC------REAAILLLDREANF-ERWIE-----EEEVITSFS 448 (556)
Q Consensus 381 g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~------~d~~I~i~d~~~~~-~~~~~-----~~~~i~~v~ 448 (556)
..|++||..+.+-......-.+.|+++.|..+.+.++.|. ....+..||+.+.. ..+.. -.++++.+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999988777666655666899999986666666654 35568999999887 23332 247788887
Q ss_pred EcC-CC-CEEEEEE-cCC--eEEEEEc
Q 008717 449 LSK-DN-KYLLVNL-INQ--EIHLWSI 470 (556)
Q Consensus 449 ~sp-~~-~~l~~~~-~dg--~I~lwd~ 470 (556)
+.. |+ ++.+.|. .++ .|..||=
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcC
Confidence 743 33 3444443 233 4666763
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.55 E-value=14 Score=35.60 Aligned_cols=111 Identities=9% Similarity=0.144 Sum_probs=67.4
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe------CCCcEEEEECCCCeEEEeeccc----CCCeeEEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM------TDKSICLWDLDGRELESWKGQK----TLRISDMA 408 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~----~~~v~~v~ 408 (556)
..|++||..+.+....-..-.+.|+++.|..+.+.++.|. ....+..||+.+.....+.... .++|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 3599999987776555555678899999986655566554 3456889999887765555522 24788877
Q ss_pred Ecc-CCC-EEEEEe-CC--CeEEEEECCCCe-ee--eeecCCceEEEEE
Q 008717 409 ITD-DGK-RIISIC-RE--AAILLLDREANF-ER--WIEEEEVITSFSL 449 (556)
Q Consensus 409 ~s~-~g~-~l~~~~-~d--~~I~i~d~~~~~-~~--~~~~~~~i~~v~~ 449 (556)
+.. |+. ..+.|. .+ ..|..||-.... .. .......|..+.+
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 743 333 343433 23 346677655444 11 2223445555544
No 495
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.34 E-value=5.6 Score=30.74 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=30.7
Q ss_pred eCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE
Q 008717 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
..+|.+.-||..+++ ..+...-.-.+.+++++|+.+++++-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345889999999998 55555566789999999999888764
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=8.2 Score=44.11 Aligned_cols=166 Identities=19% Similarity=0.286 Sum_probs=93.5
Q ss_pred CCCCcceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEe--------CCC
Q 008717 258 NRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW--------SPN 328 (556)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--------s~~ 328 (556)
+.+|...+..+. |...-..+-+-| =++.-+ +.|+.+.+|+.++++.. ..+.+-...|..+.. -|.
T Consensus 65 ~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred ccCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhh
Confidence 556666665555 333233333334 233233 35889999999987554 334444445555442 222
Q ss_pred CCEEEEEeCCCcEEEEECC----CCcE-----EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEEC----CC----C
Q 008717 329 DHQLLTCGQEEAIRRWDVN----SGEC-----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL----DG----R 391 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~----~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~----~~----~ 391 (556)
=++++..+.--.|.++-+. ++.. ..++...+..|.++....+|+.|++| .|| .+|.+ .. +
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGS 215 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhc
Confidence 2344444444455555332 1111 12233346678888877677666665 455 34443 11 1
Q ss_pred ---e--------------EEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 392 ---E--------------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 392 ---~--------------~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
+ +..+.+.+..+|..+++...-..+.+-+..++|.+||+..
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 1122223344899999998888999999999999999987
No 497
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.65 E-value=40 Score=35.45 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCEEEEE---eCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc--CC
Q 008717 328 NDHQLLTC---GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK--TL 402 (556)
Q Consensus 328 ~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~ 402 (556)
++-++++. ...+...+.| ..|..+..+.........+...++|.+++... +.+..+|+.++.+....... ..
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccc
Q ss_pred CeeEEEEccCCCEEEEEeC-------------CCeEEEEECCCCe----eeeeecC------------------------
Q 008717 403 RISDMAITDDGKRIISICR-------------EAAILLLDREANF----ERWIEEE------------------------ 441 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~-------------d~~I~i~d~~~~~----~~~~~~~------------------------ 441 (556)
.-.++...|+|++|+.+.. ...|..+| .+++ ..+..|-
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Q ss_pred -CceEEEEEcCCCCEEEEEEcCC-eEEEEEcCCCCcceeEEeCccC
Q 008717 442 -EVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 442 -~~i~~v~~sp~~~~l~~~~~dg-~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
--++++.+.+....|++.+... .|...|.+++ +....+..+..
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~-~i~Wilg~~~~ 314 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG-KIKWILGPPGG 314 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS--EEEEES-STT
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCC-cEEEEeCCCCC
No 498
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.11 E-value=46 Score=33.69 Aligned_cols=39 Identities=5% Similarity=-0.141 Sum_probs=19.5
Q ss_pred cEEEEECCCCcEEEEEecCC--CceEEEEEecCCCeEEEEeC
Q 008717 340 AIRRWDVNSGECLHVYEKTG--VGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~ 379 (556)
.+.+||..+.+....-.... ..-.++... +++..+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 58889987765433211111 111233332 5666777764
No 499
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.98 E-value=30 Score=31.52 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEecCC-CeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEE---------EEECCCCe
Q 008717 366 GWFLDG-GGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAIL---------LLDREANF 434 (556)
Q Consensus 366 ~~~~~~-~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~---------i~d~~~~~ 434 (556)
++...| +.++.+...+.|.+|++. ........-..-+.|..+.++..|+++++--.+.... =|+.....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Q ss_pred -----eeeeec---------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce-----------
Q 008717 435 -----ERWIEE---------------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV----------- 477 (556)
Q Consensus 435 -----~~~~~~---------------------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~----------- 477 (556)
.+..+| ..++.+++..|-.--|++|+ ++.+.||.+.. ...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~--~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY--QTIQSEKFSFLDFE 178 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE--EEEecccccEEech
Q ss_pred eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEE
Q 008717 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVP 513 (556)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~i 513 (556)
..+-.|........+++ -+.|||..++.....+
T Consensus 179 ~~l~~~~~~~~p~~v~i---c~~yiA~~s~~ev~Vl 211 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAI---CEGYIAVMSDLEVLVL 211 (215)
T ss_pred hhhhheecCceEEEEEE---EeeEEEEecCCEEEEE
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.83 E-value=1.1 Score=44.77 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=96.9
Q ss_pred EEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE-EEE-ecCCC----ceE-EEEEecCCCeEEEEeCCCcE
Q 008717 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL-HVY-EKTGV----GLI-SCGWFLDGGGIFAGMTDKSI 383 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~~~----~v~-~i~~~~~~~~l~~~~~dg~i 383 (556)
..+......|..+-..|||+.+..-+. ..+.++++.+.... +++ ....+ .|+ .+..-..|..+++++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 335555677888899999998887665 57888888654311 111 11111 111 11122356678888999988
Q ss_pred EEE-ECCCC-e--EEEeec--ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEE
Q 008717 384 CLW-DLDGR-E--LESWKG--QKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYL 456 (556)
Q Consensus 384 ~vw-d~~~~-~--~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l 456 (556)
.-| |.+.. . +..... .....+..+.-..+.+-+++-+..|++.++.....+ .-+...-..+.-+++||.+.++
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence 877 54421 1 111111 111122222222233456777788888877765554 2222233456778999999999
Q ss_pred EEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 457 LVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
++-. .|.|+++.+++. .+--++.
T Consensus 373 l~e~-~gki~~~~l~Nr-~Peisws 395 (733)
T COG4590 373 LSED-QGKIRLAQLENR-NPEISWS 395 (733)
T ss_pred eeec-CCceEEEEecCC-CCCccHH
Confidence 8765 677999998876 4433333
Done!