Query 008717
Match_columns 556
No_of_seqs 807 out of 4115
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 9E-47 3.1E-51 387.9 37.0 381 62-517 7-410 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 1E-40 3.5E-45 328.6 39.5 260 263-529 4-270 (304)
3 1vyh_C Platelet-activating fac 100.0 1.5E-40 5.2E-45 341.5 34.2 263 264-533 100-384 (410)
4 3ow8_A WD repeat-containing pr 100.0 1.6E-39 5.4E-44 322.5 38.6 266 262-532 22-293 (321)
5 3ow8_A WD repeat-containing pr 100.0 3.3E-39 1.1E-43 320.2 38.6 268 238-517 51-320 (321)
6 4ery_A WD repeat-containing pr 100.0 6.9E-39 2.4E-43 316.4 38.7 268 262-533 13-283 (312)
7 1got_B GT-beta; complex (GTP-b 100.0 2E-38 6.8E-43 317.3 40.9 267 260-532 43-315 (340)
8 1got_B GT-beta; complex (GTP-b 100.0 3.5E-38 1.2E-42 315.6 39.3 266 238-515 70-340 (340)
9 3frx_A Guanine nucleotide-bind 100.0 6.7E-38 2.3E-42 310.6 39.4 249 263-518 8-267 (319)
10 4gqb_B Methylosome protein 50; 100.0 2.8E-38 9.6E-43 316.3 36.3 247 269-521 79-334 (344)
11 2pbi_B Guanine nucleotide-bind 100.0 1.7E-37 5.7E-42 312.4 38.9 267 261-532 53-329 (354)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-37 5E-42 311.7 34.8 255 262-519 5-284 (345)
13 2xzm_R RACK1; ribosome, transl 100.0 1.4E-36 4.8E-41 304.3 38.6 273 237-519 41-341 (343)
14 3iz6_a 40S ribosomal protein R 100.0 3.8E-37 1.3E-41 312.9 34.8 253 261-520 55-377 (380)
15 2pbi_B Guanine nucleotide-bind 100.0 5.9E-37 2E-41 308.3 35.8 266 239-515 80-354 (354)
16 1erj_A Transcriptional repress 100.0 2.3E-36 7.9E-41 308.6 39.2 241 274-519 125-390 (393)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-36 6.5E-41 303.6 35.8 251 268-522 57-339 (345)
18 2ynn_A Coatomer subunit beta'; 100.0 2.2E-36 7.4E-41 297.6 35.6 274 238-519 20-303 (304)
19 1erj_A Transcriptional repress 100.0 3E-36 1E-40 307.7 37.7 256 270-533 62-356 (393)
20 1nr0_A Actin interacting prote 100.0 4.5E-36 1.5E-40 324.3 39.9 277 239-528 164-579 (611)
21 2xzm_R RACK1; ribosome, transl 100.0 1.4E-35 4.6E-40 297.1 40.2 257 262-523 11-290 (343)
22 2pm7_B Protein transport prote 100.0 3.5E-36 1.2E-40 295.1 33.6 250 265-518 2-285 (297)
23 1nr0_A Actin interacting prote 100.0 3.2E-36 1.1E-40 325.4 36.2 256 262-524 49-361 (611)
24 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.3E-40 290.9 38.1 264 240-517 40-311 (312)
25 2hes_X YDR267CP; beta-propelle 100.0 1.5E-35 5E-40 295.2 36.5 252 262-520 4-282 (330)
26 4gqb_B Methylosome protein 50; 100.0 8.3E-37 2.8E-41 305.6 27.4 256 270-532 28-302 (344)
27 4g56_B MGC81050 protein; prote 100.0 2.3E-36 7.8E-41 304.4 30.6 250 265-520 87-345 (357)
28 2hes_X YDR267CP; beta-propelle 100.0 7.9E-36 2.7E-40 297.1 34.1 272 238-518 27-328 (330)
29 3bg1_A Protein SEC13 homolog; 100.0 2.3E-36 7.9E-41 299.1 29.3 247 267-517 8-292 (316)
30 2ymu_A WD-40 repeat protein; u 100.0 1.8E-35 6.1E-40 317.2 37.5 266 239-515 311-577 (577)
31 2ymu_A WD-40 repeat protein; u 100.0 6.3E-35 2.1E-39 313.0 40.3 282 239-532 270-552 (577)
32 4g56_B MGC81050 protein; prote 100.0 1.6E-36 5.4E-41 305.6 25.5 258 269-532 39-314 (357)
33 4aow_A Guanine nucleotide-bind 100.0 1.8E-34 6.3E-39 287.4 40.1 253 263-520 29-339 (340)
34 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-34 4E-39 288.7 34.0 257 265-524 4-343 (351)
35 3jrp_A Fusion protein of prote 100.0 1.1E-34 3.9E-39 293.1 34.0 253 263-519 2-288 (379)
36 1gxr_A ESG1, transducin-like e 100.0 9.6E-34 3.3E-38 281.5 40.1 253 266-524 45-302 (337)
37 3zwl_B Eukaryotic translation 100.0 8.8E-34 3E-38 285.3 38.4 250 264-521 24-349 (369)
38 1gxr_A ESG1, transducin-like e 100.0 2E-33 6.9E-38 279.2 39.9 263 244-517 71-336 (337)
39 3dm0_A Maltose-binding peripla 100.0 9.4E-34 3.2E-38 310.9 39.6 249 263-517 421-692 (694)
40 1k8k_C P40, ARP2/3 complex 41 100.0 6.6E-34 2.3E-38 287.1 34.1 245 268-518 4-274 (372)
41 3ei3_B DNA damage-binding prot 100.0 8.5E-34 2.9E-38 288.2 34.3 260 262-528 63-349 (383)
42 1sq9_A Antiviral protein SKI8; 100.0 5E-34 1.7E-38 291.0 32.1 278 237-520 28-397 (397)
43 3dm0_A Maltose-binding peripla 100.0 1.5E-33 5.1E-38 309.3 37.7 257 264-526 374-640 (694)
44 1k8k_C P40, ARP2/3 complex 41 100.0 7.3E-34 2.5E-38 286.8 32.3 253 264-520 44-363 (372)
45 3vl1_A 26S proteasome regulato 100.0 4.3E-34 1.5E-38 293.8 30.6 245 267-519 93-366 (420)
46 4aez_A CDC20, WD repeat-contai 100.0 3E-33 1E-37 286.3 36.3 270 240-525 108-387 (401)
47 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-33 5.4E-38 314.6 37.2 260 263-529 4-270 (814)
48 4e54_B DNA damage-binding prot 100.0 1.9E-34 6.6E-39 298.5 27.1 259 264-526 111-395 (435)
49 1sq9_A Antiviral protein SKI8; 100.0 9.2E-34 3.1E-38 289.0 31.4 257 263-526 7-330 (397)
50 1yfq_A Cell cycle arrest prote 100.0 8.3E-34 2.8E-38 283.1 30.1 261 265-533 4-298 (342)
51 3k26_A Polycomb protein EED; W 100.0 4.8E-34 1.6E-38 287.1 28.1 239 271-518 68-366 (366)
52 3gre_A Serine/threonine-protei 100.0 7.6E-34 2.6E-38 293.9 29.4 267 258-528 48-369 (437)
53 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-32 4.3E-37 270.6 36.3 257 262-532 8-269 (313)
54 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-32 5.1E-37 270.0 36.8 269 237-524 31-302 (313)
55 3dwl_C Actin-related protein 2 100.0 1.5E-34 5.2E-39 292.9 22.2 245 267-517 6-280 (377)
56 4gga_A P55CDC, cell division c 100.0 1.9E-32 6.6E-37 282.1 37.3 270 240-525 120-402 (420)
57 2pm9_A Protein WEB1, protein t 100.0 1.2E-33 4.1E-38 289.9 27.9 249 270-522 65-341 (416)
58 2pm9_A Protein WEB1, protein t 100.0 2E-34 6.7E-39 295.7 21.9 253 263-519 104-415 (416)
59 1r5m_A SIR4-interacting protei 100.0 3.5E-33 1.2E-37 286.5 30.9 240 271-520 107-363 (425)
60 3dwl_C Actin-related protein 2 100.0 4.7E-34 1.6E-38 289.2 24.0 262 251-516 31-377 (377)
61 3dw8_B Serine/threonine-protei 100.0 4.5E-33 1.6E-37 288.5 31.9 251 270-523 26-378 (447)
62 3ei3_B DNA damage-binding prot 100.0 7E-33 2.4E-37 281.5 32.6 240 269-518 115-382 (383)
63 1r5m_A SIR4-interacting protei 100.0 4E-33 1.4E-37 286.1 31.1 259 250-517 127-424 (425)
64 3i2n_A WD repeat-containing pr 100.0 2.4E-33 8.2E-38 281.2 28.6 253 262-520 8-293 (357)
65 4a11_B DNA excision repair pro 100.0 2.8E-32 9.5E-37 278.5 36.8 260 262-525 33-372 (408)
66 4h5i_A Guanine nucleotide-exch 100.0 1.9E-32 6.4E-37 276.6 34.6 197 317-519 133-344 (365)
67 3i2n_A WD repeat-containing pr 100.0 3E-33 1E-37 280.4 28.4 247 269-521 62-356 (357)
68 3k26_A Polycomb protein EED; W 100.0 1.2E-32 4.2E-37 276.8 32.5 252 266-522 12-322 (366)
69 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-32 3.5E-37 282.3 29.8 276 241-524 53-348 (402)
70 3v7d_B Cell division control p 100.0 2.1E-31 7.1E-36 277.8 39.9 266 238-524 135-427 (464)
71 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-33 1.2E-37 293.6 26.0 273 241-520 179-519 (524)
72 3vl1_A 26S proteasome regulato 100.0 4.5E-32 1.6E-36 278.7 32.9 250 262-518 129-419 (420)
73 3jro_A Fusion protein of prote 100.0 1E-32 3.5E-37 304.8 29.5 252 265-520 2-287 (753)
74 3mmy_A MRNA export factor; mRN 100.0 3.6E-32 1.2E-36 273.4 30.8 253 259-517 26-345 (368)
75 3v7d_B Cell division control p 100.0 3.1E-31 1.1E-35 276.5 37.9 248 263-524 112-387 (464)
76 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-32 4.4E-37 289.4 25.8 252 262-519 124-429 (524)
77 4ggc_A P55CDC, cell division c 100.0 8.5E-31 2.9E-35 258.3 36.2 264 241-520 41-317 (318)
78 4e54_B DNA damage-binding prot 100.0 1.9E-32 6.4E-37 283.5 25.3 252 264-521 156-433 (435)
79 2xyi_A Probable histone-bindin 100.0 1.7E-31 5.8E-36 275.9 30.6 253 265-521 121-413 (430)
80 3sfz_A APAF-1, apoptotic pepti 100.0 4.7E-31 1.6E-35 308.1 38.1 248 264-518 607-913 (1249)
81 1pgu_A Actin interacting prote 100.0 7.4E-31 2.5E-35 283.0 35.4 264 263-532 54-342 (615)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-30 4E-35 270.8 35.1 266 264-547 110-377 (445)
83 3gre_A Serine/threonine-protei 100.0 2.1E-31 7.2E-36 275.5 28.9 243 270-515 109-437 (437)
84 3frx_A Guanine nucleotide-bind 100.0 1.2E-30 4E-35 258.5 32.9 217 306-526 6-235 (319)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.7E-30 2.6E-34 264.6 40.2 261 239-525 133-398 (445)
86 1p22_A F-BOX/WD-repeat protein 100.0 9.7E-31 3.3E-35 270.6 32.6 259 239-523 147-419 (435)
87 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-30 5.6E-35 268.9 33.6 248 266-532 127-388 (435)
88 4aez_A CDC20, WD repeat-contai 100.0 8.5E-31 2.9E-35 268.1 30.8 245 268-524 87-342 (401)
89 1yfq_A Cell cycle arrest prote 100.0 3.6E-31 1.2E-35 263.9 27.0 260 238-515 26-321 (342)
90 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-30 5.1E-35 290.5 33.9 275 239-521 21-305 (814)
91 3sfz_A APAF-1, apoptotic pepti 100.0 6.2E-30 2.1E-34 298.6 38.6 277 250-532 634-1006(1249)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-30 4.7E-35 266.5 29.0 245 274-521 36-302 (402)
93 3dw8_B Serine/threonine-protei 100.0 1.2E-30 4.2E-35 270.2 28.5 272 239-516 44-444 (447)
94 1pgu_A Actin interacting prote 100.0 5.3E-30 1.8E-34 276.4 34.4 251 270-528 16-293 (615)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-30 1.9E-34 266.2 33.1 244 272-519 4-342 (450)
96 2pm7_B Protein transport prote 100.0 1.9E-30 6.6E-35 254.2 27.9 228 239-472 25-285 (297)
97 3iz6_a 40S ribosomal protein R 100.0 1.3E-30 4.3E-35 264.8 27.0 232 239-473 124-376 (380)
98 2oaj_A Protein SNI1; WD40 repe 100.0 5.6E-30 1.9E-34 287.2 34.6 272 238-523 72-610 (902)
99 4gga_A P55CDC, cell division c 100.0 2.8E-29 9.4E-34 258.5 34.2 264 259-532 88-367 (420)
100 3bg1_A Protein SEC13 homolog; 100.0 1.3E-30 4.4E-35 257.8 22.5 240 232-472 14-293 (316)
101 1l0q_A Surface layer protein; 100.0 5.4E-28 1.8E-32 245.9 40.6 272 238-528 5-285 (391)
102 3lrv_A PRE-mRNA-splicing facto 100.0 6.6E-30 2.2E-34 255.7 24.5 232 278-520 42-294 (343)
103 4gq1_A NUP37; propeller, trans 100.0 1.3E-29 4.3E-34 258.6 24.3 243 270-517 87-388 (393)
104 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-28 5.2E-33 275.6 34.2 241 268-516 13-310 (902)
105 4ggc_A P55CDC, cell division c 100.0 1.5E-27 5.1E-32 234.9 36.8 265 259-533 8-288 (318)
106 4h5i_A Guanine nucleotide-exch 100.0 8E-29 2.7E-33 250.0 27.6 199 270-473 131-344 (365)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-28 6.6E-33 246.2 28.5 238 263-520 10-273 (355)
108 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-28 5.6E-33 244.1 27.5 238 239-480 27-344 (351)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-28 1.7E-32 251.5 31.7 245 268-518 98-391 (450)
110 3jrp_A Fusion protein of prote 100.0 3.3E-28 1.1E-32 245.6 29.5 211 262-473 45-288 (379)
111 2j04_A TAU60, YPL007P, hypothe 100.0 4E-29 1.4E-33 257.1 22.1 229 266-517 46-296 (588)
112 4aow_A Guanine nucleotide-bind 100.0 1.5E-27 5E-32 237.4 32.9 234 289-527 9-255 (340)
113 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-28 1.1E-32 250.4 28.2 189 270-470 83-295 (588)
114 3bws_A Protein LP49; two-domai 100.0 4.4E-27 1.5E-31 242.6 36.1 242 267-518 164-432 (433)
115 4a11_B DNA excision repair pro 100.0 6.5E-28 2.2E-32 246.0 28.7 239 269-517 96-404 (408)
116 3zwl_B Eukaryotic translation 100.0 2.8E-27 9.7E-32 237.7 32.9 215 308-526 23-257 (369)
117 2w18_A PALB2, fancn, partner a 100.0 5.9E-27 2E-31 226.7 32.5 248 263-516 26-355 (356)
118 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-27 6.4E-32 237.9 29.0 264 236-520 49-335 (343)
119 2xyi_A Probable histone-bindin 100.0 1.7E-27 5.7E-32 245.9 26.9 205 311-518 122-353 (430)
120 3bws_A Protein LP49; two-domai 100.0 2.8E-26 9.4E-31 236.6 32.1 258 263-527 114-399 (433)
121 3jro_A Fusion protein of prote 100.0 3.4E-27 1.2E-31 260.6 25.1 210 262-472 43-285 (753)
122 2w18_A PALB2, fancn, partner a 100.0 3E-26 1E-30 221.8 26.8 194 273-470 112-355 (356)
123 3mmy_A MRNA export factor; mRN 100.0 6.1E-26 2.1E-30 227.8 29.3 221 308-532 30-318 (368)
124 1l0q_A Surface layer protein; 99.9 5.9E-25 2E-29 223.4 34.5 232 285-527 3-242 (391)
125 4gq1_A NUP37; propeller, trans 99.9 1.7E-26 5.9E-31 235.4 22.6 229 237-471 103-388 (393)
126 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-25 5.5E-30 224.9 28.4 232 273-520 59-338 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.2E-25 2.5E-29 224.9 29.0 254 266-532 111-400 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.3E-23 1.1E-27 212.5 30.8 226 262-499 168-409 (415)
129 1ri6_A Putative isomerase YBHE 99.9 1.3E-21 4.5E-26 194.4 34.2 270 242-522 12-314 (343)
130 2ojh_A Uncharacterized protein 99.9 9.6E-23 3.3E-27 197.6 23.4 236 263-509 32-293 (297)
131 3u4y_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 194.9 30.6 270 240-523 15-309 (331)
132 1pby_B Quinohemoprotein amine 99.9 3.2E-22 1.1E-26 198.3 27.1 271 238-529 4-321 (337)
133 1nir_A Nitrite reductase; hemo 99.9 1.4E-21 4.9E-26 206.8 33.1 265 239-522 153-462 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2E-22 7E-27 222.5 26.1 240 272-517 36-366 (741)
135 3vgz_A Uncharacterized protein 99.9 6.7E-21 2.3E-25 190.3 33.0 246 271-526 39-311 (353)
136 1nir_A Nitrite reductase; hemo 99.9 2.7E-21 9.3E-26 204.6 30.4 240 280-529 145-420 (543)
137 3hfq_A Uncharacterized protein 99.9 1.2E-20 4.2E-25 188.3 32.2 252 269-525 36-326 (347)
138 2ojh_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 187.6 25.9 225 290-524 18-264 (297)
139 1jmx_B Amine dehydrogenase; ox 99.9 4.1E-21 1.4E-25 191.4 27.3 238 277-528 4-335 (349)
140 3o4h_A Acylamino-acid-releasin 99.9 2.4E-21 8.1E-26 207.8 24.5 237 271-522 20-278 (582)
141 3u4y_A Uncharacterized protein 99.9 1.9E-20 6.6E-25 185.4 28.5 233 279-521 4-255 (331)
142 2ecf_A Dipeptidyl peptidase IV 99.9 3.6E-21 1.2E-25 212.4 24.3 238 274-518 110-413 (741)
143 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-21 1.6E-25 211.0 24.7 251 263-518 48-393 (723)
144 3scy_A Hypothetical bacterial 99.9 1.9E-19 6.3E-24 180.9 34.0 260 271-539 48-358 (361)
145 1ri6_A Putative isomerase YBHE 99.9 7.9E-20 2.7E-24 181.4 30.3 227 286-517 7-261 (343)
146 2z3z_A Dipeptidyl aminopeptida 99.9 9E-21 3.1E-25 208.1 25.8 259 252-520 100-437 (706)
147 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-21 5.6E-26 214.5 18.9 239 274-520 18-347 (723)
148 3vgz_A Uncharacterized protein 99.9 1.2E-19 4E-24 181.2 30.3 237 263-509 80-335 (353)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-20 6.5E-25 192.8 23.4 201 272-473 36-279 (434)
150 2z3z_A Dipeptidyl aminopeptida 99.9 4.1E-20 1.4E-24 202.8 25.4 240 273-522 82-395 (706)
151 1k32_A Tricorn protease; prote 99.9 5.6E-20 1.9E-24 210.4 25.8 247 264-522 195-465 (1045)
152 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-19 1.4E-23 178.8 28.5 245 271-521 38-344 (365)
153 1k32_A Tricorn protease; prote 99.8 7.7E-20 2.6E-24 209.3 25.5 241 264-519 237-503 (1045)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 3.1E-19 1.1E-23 183.7 27.4 201 270-470 90-331 (434)
155 3o4h_A Acylamino-acid-releasin 99.8 1.6E-19 5.5E-24 193.6 22.7 280 220-518 10-315 (582)
156 3pe7_A Oligogalacturonate lyas 99.8 4E-19 1.4E-23 180.0 23.7 258 262-525 20-336 (388)
157 1pby_B Quinohemoprotein amine 99.8 6.2E-19 2.1E-23 174.5 21.8 230 285-526 2-277 (337)
158 4a5s_A Dipeptidyl peptidase 4 99.8 4.3E-19 1.5E-23 195.7 21.6 244 274-526 18-361 (740)
159 1q7f_A NHL, brain tumor CG1071 99.8 4.6E-17 1.6E-21 157.7 32.3 242 270-520 27-282 (286)
160 1z68_A Fibroblast activation p 99.8 2E-19 7E-24 197.7 17.2 237 277-521 20-349 (719)
161 3hfq_A Uncharacterized protein 99.8 5.6E-17 1.9E-21 161.7 29.9 210 264-473 77-320 (347)
162 1jmx_B Amine dehydrogenase; ox 99.8 2.9E-17 9.8E-22 163.4 25.7 227 240-483 16-335 (349)
163 1z68_A Fibroblast activation p 99.8 2.3E-18 8E-23 189.3 19.3 245 263-518 47-391 (719)
164 3c5m_A Oligogalacturonate lyas 99.8 8.9E-18 3E-22 170.3 19.1 250 263-524 21-335 (396)
165 3fvz_A Peptidyl-glycine alpha- 99.8 2.3E-16 7.9E-21 156.2 27.0 241 271-519 22-323 (329)
166 3pe7_A Oligogalacturonate lyas 99.8 3.6E-17 1.2E-21 165.6 21.5 245 263-516 71-380 (388)
167 3azo_A Aminopeptidase; POP fam 99.7 7.7E-17 2.6E-21 175.4 23.2 248 266-521 17-328 (662)
168 2xdw_A Prolyl endopeptidase; a 99.7 7.9E-16 2.7E-20 168.8 29.7 241 270-520 122-416 (710)
169 2oiz_A Aromatic amine dehydrog 99.7 8.3E-16 2.8E-20 154.2 27.2 248 263-525 42-343 (361)
170 3scy_A Hypothetical bacterial 99.7 2.7E-15 9.3E-20 150.3 30.5 205 265-471 92-336 (361)
171 2dg1_A DRP35, lactonase; beta 99.7 8.1E-15 2.8E-19 145.1 33.0 240 261-509 33-301 (333)
172 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.3E-15 8E-20 151.3 28.9 235 286-522 4-296 (365)
173 3e5z_A Putative gluconolactona 99.7 4.5E-15 1.6E-19 144.4 29.7 245 262-521 17-289 (296)
174 4a5s_A Dipeptidyl peptidase 4 99.7 4.9E-16 1.7E-20 171.2 24.9 249 262-521 46-403 (740)
175 3c5m_A Oligogalacturonate lyas 99.7 3.3E-16 1.1E-20 158.7 21.5 248 266-521 73-387 (396)
176 3azo_A Aminopeptidase; POP fam 99.7 7E-16 2.4E-20 167.8 24.4 253 264-525 59-376 (662)
177 2bkl_A Prolyl endopeptidase; m 99.7 9.7E-16 3.3E-20 167.6 24.2 242 270-522 118-401 (695)
178 2gop_A Trilobed protease; beta 99.7 3.9E-15 1.3E-19 148.1 26.1 224 273-525 15-298 (347)
179 2gop_A Trilobed protease; beta 99.7 6.3E-15 2.1E-19 146.7 27.1 222 273-521 59-333 (347)
180 2dg1_A DRP35, lactonase; beta 99.7 6.7E-15 2.3E-19 145.7 26.1 239 273-518 6-263 (333)
181 1rwi_B Serine/threonine-protei 99.7 8.7E-15 3E-19 140.1 25.2 239 274-521 25-267 (270)
182 3no2_A Uncharacterized protein 99.7 1.5E-13 5E-18 132.2 30.4 235 283-526 4-260 (276)
183 3dsm_A Uncharacterized protein 99.6 2.5E-13 8.7E-18 134.2 28.6 239 273-526 44-309 (328)
184 1q7f_A NHL, brain tumor CG1071 99.6 3.6E-13 1.2E-17 130.1 29.1 198 270-473 74-281 (286)
185 2xdw_A Prolyl endopeptidase; a 99.6 2E-13 7E-18 149.6 29.6 212 316-530 123-380 (710)
186 3fvz_A Peptidyl-glycine alpha- 99.6 3.1E-13 1E-17 133.7 27.2 205 317-525 23-284 (329)
187 2z2n_A Virginiamycin B lyase; 99.6 3.7E-12 1.3E-16 123.3 34.1 240 268-521 10-257 (299)
188 1yr2_A Prolyl oligopeptidase; 99.6 1.3E-13 4.5E-18 151.8 24.4 239 271-521 161-444 (741)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.2E-12 7.6E-17 126.1 29.4 241 269-518 14-299 (314)
190 1qks_A Cytochrome CD1 nitrite 99.6 1.4E-11 4.9E-16 130.0 36.8 273 242-527 174-547 (567)
191 3hrp_A Uncharacterized protein 99.6 4.1E-12 1.4E-16 129.3 31.2 236 273-516 131-408 (409)
192 2bkl_A Prolyl endopeptidase; m 99.6 3.1E-13 1.1E-17 147.7 24.5 230 282-517 77-348 (695)
193 2mad_H Methylamine dehydrogena 99.5 2E-11 7E-16 122.4 34.3 246 263-524 58-356 (373)
194 1qks_A Cytochrome CD1 nitrite 99.5 6.9E-12 2.4E-16 132.4 31.6 227 282-518 165-421 (567)
195 2z2n_A Virginiamycin B lyase; 99.5 5.9E-11 2E-15 114.8 34.6 236 271-520 55-297 (299)
196 3e5z_A Putative gluconolactona 99.5 2.1E-12 7.2E-17 125.4 23.9 203 265-473 61-287 (296)
197 3no2_A Uncharacterized protein 99.5 1.5E-12 5.1E-17 125.1 22.4 191 328-526 4-203 (276)
198 2qc5_A Streptogramin B lactona 99.5 9E-11 3.1E-15 113.5 33.6 239 270-521 17-262 (300)
199 2oiz_A Aromatic amine dehydrog 99.5 3.5E-12 1.2E-16 127.7 24.0 235 283-527 14-304 (361)
200 3g4e_A Regucalcin; six bladed 99.5 5.6E-11 1.9E-15 115.5 31.4 228 268-507 8-261 (297)
201 3sjl_D Methylamine dehydrogena 99.5 1.1E-11 3.8E-16 123.1 26.2 253 262-528 69-373 (386)
202 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8.1E-17 123.0 19.9 198 271-473 65-265 (270)
203 3iuj_A Prolyl endopeptidase; h 99.5 5.1E-12 1.7E-16 137.9 24.9 240 270-522 126-409 (693)
204 3dsm_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 122.0 25.1 218 292-522 15-257 (328)
205 3dr2_A Exported gluconolactona 99.5 1.6E-11 5.3E-16 119.9 25.2 236 263-515 35-303 (305)
206 1xip_A Nucleoporin NUP159; bet 99.4 2.7E-12 9.4E-17 127.9 18.8 173 274-460 39-232 (388)
207 3c75_H MADH, methylamine dehyd 99.4 1.9E-11 6.4E-16 123.6 25.0 250 262-525 109-409 (426)
208 1yr2_A Prolyl oligopeptidase; 99.4 2.8E-11 9.7E-16 133.2 25.8 229 282-517 116-392 (741)
209 2qc5_A Streptogramin B lactona 99.4 4.2E-10 1.4E-14 108.7 31.3 233 270-516 59-298 (300)
210 2ghs_A AGR_C_1268P; regucalcin 99.4 6.1E-10 2.1E-14 109.7 32.4 220 274-507 50-291 (326)
211 2qe8_A Uncharacterized protein 99.4 3.4E-10 1.2E-14 112.3 26.8 236 273-512 17-315 (343)
212 1xip_A Nucleoporin NUP159; bet 99.3 4.8E-11 1.6E-15 118.9 17.0 170 319-504 39-230 (388)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 9.5E-10 3.2E-14 107.2 26.0 202 316-524 16-262 (314)
214 1mda_H Methylamine dehydrogena 99.3 2.7E-10 9.3E-15 113.2 20.7 220 295-527 47-355 (368)
215 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.6E-14 111.4 25.5 192 278-470 176-408 (409)
216 3g4e_A Regucalcin; six bladed 99.3 4.7E-09 1.6E-13 101.8 29.1 205 316-528 11-239 (297)
217 2mad_H Methylamine dehydrogena 99.2 1.4E-08 4.8E-13 101.7 31.2 233 280-526 28-315 (373)
218 3iuj_A Prolyl endopeptidase; h 99.2 8.9E-10 3E-14 120.2 22.2 200 315-523 126-364 (693)
219 2ece_A 462AA long hypothetical 99.2 1.5E-08 5E-13 101.4 27.6 220 282-506 93-399 (462)
220 3dr2_A Exported gluconolactona 99.2 2.2E-09 7.6E-14 104.5 21.7 198 265-469 78-303 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.2 2.4E-08 8E-13 98.2 28.0 196 320-525 51-266 (326)
222 3sjl_D Methylamine dehydrogena 99.2 1.1E-08 3.7E-13 101.5 25.1 234 280-525 40-327 (386)
223 2hz6_A Endoplasmic reticulum t 99.1 1.7E-11 6E-16 122.9 3.6 189 283-482 8-201 (369)
224 1fwx_A Nitrous oxide reductase 99.1 1.8E-08 6.1E-13 104.2 24.8 237 282-524 99-437 (595)
225 1yiq_A Quinohemoprotein alcoho 99.1 1.2E-08 4.2E-13 110.6 24.9 237 283-528 120-515 (689)
226 1mda_H Methylamine dehydrogena 99.1 3.1E-09 1.1E-13 105.5 17.7 215 262-486 56-359 (368)
227 1kb0_A Quinohemoprotein alcoho 99.1 9.3E-09 3.2E-13 111.3 22.6 235 283-527 127-516 (677)
228 2hz6_A Endoplasmic reticulum t 99.1 4.8E-11 1.7E-15 119.7 4.2 186 328-525 8-199 (369)
229 3c75_H MADH, methylamine dehyd 99.1 2E-08 7E-13 101.4 22.9 232 283-526 83-367 (426)
230 1npe_A Nidogen, entactin; glyc 99.0 2.2E-07 7.4E-12 88.4 28.3 235 285-526 2-246 (267)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.0 3.1E-07 1.1E-11 91.9 30.5 231 283-527 102-346 (376)
232 2fp8_A Strictosidine synthase; 99.0 2.3E-07 8E-12 90.8 27.2 237 273-519 19-314 (322)
233 2qe8_A Uncharacterized protein 99.0 2.7E-08 9.4E-13 98.5 19.9 195 270-468 64-317 (343)
234 1npe_A Nidogen, entactin; glyc 99.0 7.9E-07 2.7E-11 84.4 29.1 204 273-482 36-247 (267)
235 1kb0_A Quinohemoprotein alcoho 98.9 1.6E-07 5.5E-12 101.6 24.5 194 322-518 247-567 (677)
236 1fwx_A Nitrous oxide reductase 98.9 2.6E-07 8.8E-12 95.6 23.6 186 328-518 100-361 (595)
237 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1E-06 3.6E-11 88.1 27.5 229 283-526 52-304 (376)
238 2iwa_A Glutamine cyclotransfer 98.9 1.1E-06 3.7E-11 82.6 25.5 200 263-473 10-238 (266)
239 1yiq_A Quinohemoprotein alcoho 98.9 2.4E-07 8.1E-12 100.5 24.2 181 322-505 239-536 (689)
240 3hxj_A Pyrrolo-quinoline quino 98.9 1.7E-07 5.8E-12 91.8 21.1 219 284-520 107-326 (330)
241 2p4o_A Hypothetical protein; p 98.8 5.1E-06 1.7E-10 80.6 30.0 236 262-509 22-279 (306)
242 2ece_A 462AA long hypothetical 98.8 1.2E-06 4E-11 87.7 25.4 183 274-460 139-399 (462)
243 2iwa_A Glutamine cyclotransfer 98.8 2.4E-06 8.4E-11 80.2 25.6 204 309-520 11-239 (266)
244 3hxj_A Pyrrolo-quinoline quino 98.8 1.5E-07 5.2E-12 92.1 17.9 231 270-524 57-289 (330)
245 2xtc_A F-box-like/WD repeat-co 98.7 3.1E-08 1.1E-12 73.9 7.4 38 60-97 2-39 (90)
246 3nol_A Glutamine cyclotransfer 98.7 2.8E-06 9.4E-11 78.9 21.5 189 263-461 32-244 (262)
247 2fp8_A Strictosidine synthase; 98.7 1.3E-05 4.4E-10 78.3 27.4 202 319-526 20-276 (322)
248 2xe4_A Oligopeptidase B; hydro 98.7 6.8E-06 2.3E-10 90.1 28.0 243 270-521 170-461 (751)
249 1kv9_A Type II quinohemoprotei 98.7 4.5E-06 1.5E-10 90.2 25.3 237 284-528 117-498 (668)
250 3nol_A Glutamine cyclotransfer 98.6 1.4E-05 4.7E-10 74.2 23.3 190 309-507 33-244 (262)
251 3v64_C Agrin; beta propeller, 98.6 9.4E-05 3.2E-09 73.0 31.2 236 275-521 36-278 (349)
252 2ad6_A Methanol dehydrogenase 98.6 1.5E-05 5.2E-10 84.3 26.0 237 284-527 115-503 (571)
253 1ijq_A LDL receptor, low-densi 98.6 0.00017 5.7E-09 70.1 31.6 224 287-521 4-241 (316)
254 3nok_A Glutaminyl cyclase; bet 98.6 5.3E-06 1.8E-10 77.0 19.5 187 264-460 45-253 (268)
255 4a2l_A BT_4663, two-component 98.5 0.00012 4.1E-09 80.9 32.7 236 272-522 309-575 (795)
256 1ijq_A LDL receptor, low-densi 98.5 0.0004 1.4E-08 67.4 32.6 208 272-481 29-246 (316)
257 3nok_A Glutaminyl cyclase; bet 98.5 2.4E-05 8E-10 72.6 22.1 166 308-482 44-219 (268)
258 1k3i_A Galactose oxidase precu 98.5 4.6E-06 1.6E-10 90.1 20.3 241 277-521 190-500 (656)
259 3v65_B Low-density lipoprotein 98.5 0.00017 5.7E-09 72.3 30.0 235 277-522 81-322 (386)
260 3v64_C Agrin; beta propeller, 98.5 0.00014 4.8E-09 71.8 29.0 205 272-481 72-283 (349)
261 3qqz_A Putative uncharacterize 98.5 0.00015 5.3E-09 67.5 27.4 201 266-470 20-251 (255)
262 3mbr_X Glutamine cyclotransfer 98.5 6.1E-05 2.1E-09 69.2 24.0 189 263-461 10-223 (243)
263 3tc9_A Hypothetical hydrolase; 98.5 5.3E-05 1.8E-09 77.1 26.1 153 274-432 138-301 (430)
264 3p5b_L Low density lipoprotein 98.5 0.00033 1.1E-08 70.5 31.6 227 286-522 85-324 (400)
265 1w6s_A Methanol dehydrogenase 98.5 2.1E-05 7.1E-10 83.3 23.6 241 278-526 111-511 (599)
266 3p5b_L Low density lipoprotein 98.5 0.00053 1.8E-08 69.0 32.7 212 270-483 109-330 (400)
267 4a2l_A BT_4663, two-component 98.5 0.00023 7.9E-09 78.6 32.7 235 272-521 356-617 (795)
268 1flg_A Protein (quinoprotein e 98.5 4.8E-05 1.6E-09 80.5 25.9 240 284-529 117-527 (582)
269 3mbr_X Glutamine cyclotransfer 98.5 7.4E-05 2.5E-09 68.7 23.6 166 308-481 10-187 (243)
270 3v65_B Low-density lipoprotein 98.4 0.00023 7.9E-09 71.3 28.3 206 271-481 114-326 (386)
271 4hw6_A Hypothetical protein, I 98.4 0.00017 5.9E-09 73.3 27.1 192 273-470 139-372 (433)
272 2xe4_A Oligopeptidase B; hydro 98.4 2.1E-05 7.2E-10 86.2 21.7 191 319-516 175-398 (751)
273 1kv9_A Type II quinohemoprotei 98.3 6.7E-05 2.3E-09 81.0 24.2 162 322-484 234-499 (668)
274 3qqz_A Putative uncharacterize 98.3 0.00033 1.1E-08 65.2 24.5 202 311-517 20-252 (255)
275 2p4o_A Hypothetical protein; p 98.3 0.00089 3E-08 64.5 28.7 202 308-521 23-244 (306)
276 3v9f_A Two-component system se 98.3 0.00043 1.5E-08 76.3 29.7 241 271-522 311-572 (781)
277 3sov_A LRP-6, low-density lipo 98.2 0.0019 6.6E-08 62.6 29.9 221 293-521 12-241 (318)
278 3sov_A LRP-6, low-density lipo 98.2 0.00062 2.1E-08 66.1 26.3 205 273-481 35-246 (318)
279 2ad6_A Methanol dehydrogenase 98.2 0.00012 4.2E-09 77.3 22.4 160 323-484 240-505 (571)
280 3v9f_A Two-component system se 98.2 0.00037 1.3E-08 76.8 26.8 236 272-521 362-614 (781)
281 3kya_A Putative phosphatase; s 98.2 0.00043 1.5E-08 70.7 25.0 204 274-482 140-417 (496)
282 1k3i_A Galactose oxidase precu 98.2 2.2E-05 7.4E-10 84.8 16.1 230 274-507 244-530 (656)
283 3amr_A 3-phytase; beta-propell 98.2 0.00089 3E-08 64.8 25.2 193 329-525 40-271 (355)
284 1w6s_A Methanol dehydrogenase 98.2 0.00031 1.1E-08 74.3 23.9 160 323-484 246-514 (599)
285 3m0c_C LDL receptor, low-densi 98.1 0.0029 1E-07 69.0 31.7 207 271-480 422-639 (791)
286 3tc9_A Hypothetical hydrolase; 98.1 0.00023 7.9E-09 72.3 21.0 151 319-472 138-301 (430)
287 2xbg_A YCF48-like protein; pho 98.1 0.0037 1.3E-07 60.8 28.8 230 272-515 79-319 (327)
288 3m0c_C LDL receptor, low-densi 98.1 0.0027 9.2E-08 69.3 30.2 224 293-523 403-637 (791)
289 2ism_A Putative oxidoreductase 98.1 0.0027 9.4E-08 62.5 27.0 196 272-473 30-298 (352)
290 1flg_A Protein (quinoprotein e 98.0 0.00036 1.2E-08 73.8 21.6 144 339-484 291-527 (582)
291 2p9w_A MAL S 1 allergenic prot 98.0 0.0017 5.9E-08 62.2 24.0 159 315-473 10-216 (334)
292 3sre_A PON1, serum paraoxonase 98.0 0.00081 2.8E-08 65.9 22.0 193 274-470 51-296 (355)
293 2p9w_A MAL S 1 allergenic prot 98.0 0.0029 1E-07 60.6 24.4 199 270-470 10-263 (334)
294 2xbg_A YCF48-like protein; pho 98.0 0.015 5E-07 56.5 30.8 238 272-522 35-282 (327)
295 4a0p_A LRP6, LRP-6, low-densit 98.0 0.025 8.6E-07 60.1 34.3 227 286-521 8-240 (628)
296 2xn4_A Kelch-like protein 2; s 97.9 0.0031 1.1E-07 60.4 24.6 231 284-524 16-282 (302)
297 2vpj_A Kelch-like protein 12; 97.9 0.00075 2.6E-08 64.8 19.9 230 283-522 14-282 (301)
298 3amr_A 3-phytase; beta-propell 97.9 0.0086 2.9E-07 57.9 26.7 190 283-481 39-272 (355)
299 4hw6_A Hypothetical protein, I 97.9 0.0019 6.6E-08 65.5 23.7 205 263-471 172-432 (433)
300 3a9g_A Putative uncharacterize 97.9 0.016 5.5E-07 56.9 29.1 228 272-506 28-330 (354)
301 1n7d_A LDL receptor, low-densi 97.8 7.9E-05 2.7E-09 80.7 12.1 223 293-525 385-621 (699)
302 1n7d_A LDL receptor, low-densi 97.8 0.00013 4.5E-09 78.9 13.7 207 273-481 406-622 (699)
303 4asc_A Kelch repeat and BTB do 97.8 0.0074 2.5E-07 58.2 25.0 228 287-524 8-283 (315)
304 3ii7_A Kelch-like protein 7; p 97.8 0.003 1E-07 60.7 22.0 228 286-523 14-277 (306)
305 4a0p_A LRP6, LRP-6, low-densit 97.8 0.017 5.9E-07 61.4 29.6 197 272-473 36-238 (628)
306 2xzh_A Clathrin heavy chain 1; 97.7 0.035 1.2E-06 52.8 31.3 235 277-525 71-339 (365)
307 3s94_A LRP-6, low-density lipo 97.7 0.018 6E-07 61.2 27.1 223 292-521 16-246 (619)
308 3s94_A LRP-6, low-density lipo 97.7 0.0094 3.2E-07 63.3 24.9 199 272-473 39-244 (619)
309 2g8s_A Glucose/sorbosone dehyd 97.6 0.018 6E-07 56.6 24.8 227 272-504 17-339 (353)
310 1bpo_A Protein (clathrin); cla 97.6 0.062 2.1E-06 53.1 29.4 236 277-524 70-337 (494)
311 1zgk_A Kelch-like ECH-associat 97.6 0.009 3.1E-07 57.4 21.9 232 283-524 24-293 (308)
312 3kya_A Putative phosphatase; s 97.6 0.03 1E-06 57.2 25.3 196 273-473 186-476 (496)
313 3s25_A Hypothetical 7-bladed b 97.5 0.011 3.9E-07 56.5 20.9 214 280-522 21-259 (302)
314 2woz_A Kelch repeat and BTB do 97.5 0.046 1.6E-06 52.6 24.8 227 287-524 19-293 (318)
315 2ism_A Putative oxidoreductase 97.4 0.041 1.4E-06 54.0 23.8 140 318-460 31-221 (352)
316 2vpj_A Kelch-like protein 12; 97.4 0.0093 3.2E-07 57.0 18.4 186 283-473 62-279 (301)
317 2uvk_A YJHT; unknown function, 97.4 0.012 4E-07 57.9 19.4 234 283-526 19-350 (357)
318 3sre_A PON1, serum paraoxonase 97.4 0.082 2.8E-06 51.6 24.9 134 337-472 81-252 (355)
319 3ii7_A Kelch-like protein 7; p 97.3 0.019 6.4E-07 55.0 19.2 184 283-473 55-273 (306)
320 2xn4_A Kelch-like protein 2; s 97.3 0.012 4.1E-07 56.3 17.6 185 283-473 61-277 (302)
321 1uuj_A Platelet-activating fac 97.2 0.0003 1E-08 52.1 4.3 53 63-116 10-62 (88)
322 3a9g_A Putative uncharacterize 97.2 0.065 2.2E-06 52.5 22.7 140 318-459 29-215 (354)
323 3pbp_A Nucleoporin NUP82; beta 97.0 0.064 2.2E-06 53.0 20.1 146 280-428 28-208 (452)
324 3ott_A Two-component system se 97.0 0.46 1.6E-05 51.7 29.4 231 272-521 21-263 (758)
325 3ei3_A DNA damage-binding prot 97.0 0.74 2.5E-05 52.4 32.8 246 272-523 553-878 (1158)
326 4asc_A Kelch repeat and BTB do 97.0 0.032 1.1E-06 53.6 17.4 189 279-473 41-278 (315)
327 3ei3_A DNA damage-binding prot 96.9 0.27 9.3E-06 56.0 27.1 174 340-518 808-999 (1158)
328 3s25_A Hypothetical 7-bladed b 96.9 0.29 1E-05 46.6 24.6 177 277-473 57-256 (302)
329 3pbp_A Nucleoporin NUP82; beta 96.9 0.082 2.8E-06 52.2 19.3 142 369-514 30-208 (452)
330 1zgk_A Kelch-like ECH-associat 96.8 0.029 1E-06 53.7 15.5 185 283-473 70-288 (308)
331 2xzh_A Clathrin heavy chain 1; 96.8 0.39 1.3E-05 45.7 29.0 222 293-525 48-297 (365)
332 2woz_A Kelch repeat and BTB do 96.8 0.074 2.5E-06 51.1 18.2 189 280-473 53-288 (318)
333 1tl2_A L10, protein (tachylect 96.6 0.091 3.1E-06 47.0 15.7 104 360-469 41-160 (236)
334 1bpo_A Protein (clathrin); cla 96.5 0.71 2.4E-05 45.7 29.2 222 293-525 47-296 (494)
335 3das_A Putative oxidoreductase 96.5 0.66 2.3E-05 44.9 27.4 207 264-473 23-293 (347)
336 1cru_A Protein (soluble quinop 96.5 0.27 9.2E-06 49.9 20.9 103 318-420 27-162 (454)
337 1cru_A Protein (soluble quinop 96.4 0.96 3.3E-05 45.8 30.2 145 272-418 26-244 (454)
338 3sbq_A Nitrous-oxide reductase 96.4 0.58 2E-05 47.8 21.9 227 287-518 73-408 (638)
339 3das_A Putative oxidoreductase 96.4 0.37 1.3E-05 46.7 20.2 145 315-459 29-219 (347)
340 1tl2_A L10, protein (tachylect 96.3 0.14 4.7E-06 45.9 15.1 139 319-465 42-203 (236)
341 1xi4_A Clathrin heavy chain; a 96.3 0.15 5.1E-06 58.0 18.5 235 278-524 71-337 (1630)
342 2zwa_A Leucine carboxyl methyl 96.2 0.23 8E-06 53.4 19.5 194 327-522 396-639 (695)
343 3ott_A Two-component system se 96.1 2 6.8E-05 46.6 30.0 188 272-473 62-261 (758)
344 2g8s_A Glucose/sorbosone dehyd 96.0 0.77 2.6E-05 44.7 20.8 139 319-458 19-214 (353)
345 2be1_A Serine/threonine-protei 95.8 0.16 5.6E-06 49.0 14.5 187 285-477 11-235 (339)
346 2uvk_A YJHT; unknown function, 95.8 0.3 1E-05 47.6 16.9 138 339-478 168-347 (357)
347 2be1_A Serine/threonine-protei 95.6 0.1 3.5E-06 50.4 12.0 189 330-523 11-236 (339)
348 2zwa_A Leucine carboxyl methyl 95.1 0.34 1.2E-05 52.2 15.5 150 283-434 451-637 (695)
349 1xi4_A Clathrin heavy chain; a 94.8 0.6 2.1E-05 53.2 16.3 220 293-523 47-294 (1630)
350 2wg3_C Hedgehog-interacting pr 94.2 5.2 0.00018 40.4 28.5 108 272-379 13-158 (463)
351 3qhy_B Beta-lactamase inhibito 92.7 5 0.00017 37.5 16.6 219 274-518 25-246 (282)
352 3uc1_A DNA gyrase subunit A; D 90.4 13 0.00043 35.5 21.4 198 273-472 42-279 (327)
353 3b7f_A Glycosyl hydrolase, BNR 88.2 20 0.00069 34.9 24.7 180 286-469 24-259 (394)
354 3sbq_A Nitrous-oxide reductase 87.7 4.1 0.00014 41.7 11.5 121 403-523 324-483 (638)
355 3ukx_C Bimax2 peptide; arm rep 87.0 0.24 8.3E-06 26.2 1.1 12 5-16 16-27 (28)
356 2d68_A FOP, FGFR1OP; alpha hel 86.3 0.77 2.6E-05 33.6 3.9 29 65-93 20-48 (82)
357 3ukw_C Bimax1 peptide; arm rep 85.8 0.2 6.9E-06 26.5 0.5 12 5-16 16-27 (28)
358 3b7f_A Glycosyl hydrolase, BNR 84.6 31 0.0011 33.5 23.7 186 272-460 54-297 (394)
359 3qhy_B Beta-lactamase inhibito 84.1 8.2 0.00028 35.9 11.2 181 274-473 64-247 (282)
360 3no0_A DNA gyrase subunit A; D 83.7 27 0.00093 32.2 20.7 195 273-472 24-246 (276)
361 2wg3_C Hedgehog-interacting pr 80.1 35 0.0012 34.3 14.8 50 403-452 15-79 (463)
362 3kci_A Probable E3 ubiquitin-p 79.1 49 0.0017 32.1 29.9 226 284-517 62-344 (389)
363 4gq2_M Nucleoporin NUP120; bet 78.5 32 0.0011 38.2 15.2 38 319-356 237-274 (950)
364 3no0_A DNA gyrase subunit A; D 78.0 43 0.0015 30.9 20.2 155 359-518 67-246 (276)
365 1zi0_A DNA gyrase subunit A; b 76.2 52 0.0018 30.9 21.0 198 273-472 42-277 (307)
366 1wp5_A Topoisomerase IV; broke 75.9 54 0.0019 31.0 22.3 234 282-518 3-277 (323)
367 3l6v_A GYRA, DNA gyrase subuni 75.9 59 0.002 31.4 24.1 191 280-472 3-265 (370)
368 3kci_A Probable E3 ubiquitin-p 75.5 61 0.0021 31.4 22.3 182 286-471 12-240 (389)
369 4hvt_A Ritya.17583.B, post-pro 75.4 90 0.0031 33.2 20.6 194 322-520 133-383 (711)
370 3l6v_A GYRA, DNA gyrase subuni 74.7 64 0.0022 31.2 22.7 198 272-471 45-315 (370)
371 1suu_A DNA gyrase subunit A; t 70.9 70 0.0024 30.0 24.8 189 282-472 6-231 (312)
372 1wp5_A Topoisomerase IV; broke 68.0 82 0.0028 29.7 22.8 198 273-472 39-277 (323)
373 1am7_A Lysozyme; glycosidase, 67.2 4.5 0.00015 33.8 3.6 56 110-165 73-128 (158)
374 3q6k_A 43.2 kDa salivary prote 65.0 1E+02 0.0036 29.8 24.2 132 340-472 124-306 (381)
375 4hvt_A Ritya.17583.B, post-pro 64.7 1.5E+02 0.0051 31.5 25.1 236 275-521 131-432 (711)
376 4fhn_B Nucleoporin NUP120; pro 63.6 22 0.00075 40.4 9.7 38 319-356 239-276 (1139)
377 4gq2_M Nucleoporin NUP120; bet 59.3 2.1E+02 0.0073 31.5 19.4 38 443-481 237-274 (950)
378 1suu_A DNA gyrase subunit A; t 56.8 1.3E+02 0.0044 28.2 24.1 158 273-432 47-231 (312)
379 2lni_A Stress-induced-phosphop 55.7 64 0.0022 24.4 9.9 95 61-161 14-111 (133)
380 3q6k_A 43.2 kDa salivary prote 54.5 1.6E+02 0.0054 28.5 20.3 165 295-459 124-341 (381)
381 4gco_A Protein STI-1; structur 53.2 37 0.0013 26.5 6.9 85 71-161 21-108 (126)
382 3mkr_A Coatomer subunit epsilo 52.4 81 0.0028 28.9 10.2 88 63-160 64-156 (291)
383 4a9v_A PHOX; hydrolase, beta-p 50.9 62 0.0021 33.3 9.4 59 403-461 477-550 (592)
384 3zwu_A Alkaline phosphatase PH 50.2 53 0.0018 34.0 9.0 58 403-460 477-549 (592)
385 1zvt_A Topoisomerase IV subuni 48.4 1.6E+02 0.0053 26.7 12.9 141 331-472 4-163 (256)
386 3uc1_A DNA gyrase subunit A; D 48.4 1.8E+02 0.0061 27.4 23.7 228 285-517 4-278 (327)
387 1sqj_A OXG-RCBH, oligoxylogluc 47.2 3E+02 0.01 29.6 23.7 146 272-422 14-190 (789)
388 3zwu_A Alkaline phosphatase PH 46.7 62 0.0021 33.6 8.8 58 320-377 478-548 (592)
389 3f7f_A Nucleoporin NUP120; nuc 46.3 32 0.0011 36.4 6.6 37 319-357 223-259 (729)
390 3lc0_A Histidyl-tRNA synthetas 45.7 65 0.0022 32.2 8.6 29 51-79 150-178 (456)
391 1zvt_A Topoisomerase IV subuni 45.3 1.7E+02 0.0059 26.3 13.8 142 373-517 4-162 (256)
392 3bqo_A Telomeric repeat-bindin 44.2 71 0.0024 27.6 7.2 84 98-181 67-164 (211)
393 4fhn_B Nucleoporin NUP120; pro 42.4 47 0.0016 37.7 7.8 38 443-481 239-276 (1139)
394 4a9v_A PHOX; hydrolase, beta-p 41.7 1.2E+02 0.004 31.3 9.7 60 319-378 477-549 (592)
395 3bu8_A Telomeric repeat-bindin 41.6 99 0.0034 27.1 7.7 85 98-182 61-162 (235)
396 1oyi_A Double-stranded RNA-bin 41.6 11 0.00036 27.6 1.5 33 61-95 13-45 (82)
397 1elw_A TPR1-domain of HOP; HOP 39.0 1.1E+02 0.0037 22.2 8.6 91 65-161 6-99 (118)
398 2k9m_A RNA polymerase sigma fa 35.4 29 0.001 27.9 3.4 28 64-91 22-50 (130)
399 1kdl_A YOPD protein; yersinia, 35.2 20 0.00068 19.3 1.5 14 64-77 5-18 (26)
400 2j4b_A TAF5, transcription ini 33.1 69 0.0024 25.9 5.3 50 127-176 28-77 (138)
401 2lfh_A DNA-binding protein inh 33.0 20 0.0007 24.9 1.8 54 1-76 11-64 (68)
402 2dba_A Smooth muscle cell asso 31.4 1.7E+02 0.006 22.3 10.6 93 63-161 28-126 (148)
403 3f7f_A Nucleoporin NUP120; nuc 31.2 65 0.0022 34.2 6.0 37 443-482 223-259 (729)
404 1zi0_A DNA gyrase subunit A; b 31.1 3.2E+02 0.011 25.3 27.9 232 282-518 1-277 (307)
405 2qfc_A PLCR protein; TPR, HTH, 30.3 2E+02 0.0069 25.9 9.1 98 64-161 76-182 (293)
406 2jvf_A De novo protein M7; tet 30.0 24 0.00081 24.4 1.7 27 55-81 54-80 (96)
407 3upv_A Heat shock protein STI1 28.8 1.6E+02 0.0056 22.0 7.1 91 65-161 6-99 (126)
408 2cp8_A NEXT to BRCA1 gene 1 pr 27.7 57 0.0019 21.5 3.1 22 61-82 3-24 (54)
409 3qwp_A SET and MYND domain-con 27.6 3E+02 0.01 26.9 10.1 97 64-163 288-400 (429)
410 3qou_A Protein YBBN; thioredox 27.1 2.1E+02 0.0074 25.8 8.6 49 73-121 127-177 (287)
411 2xz2_A CSTF-50, isoform B; RNA 26.9 42 0.0015 23.0 2.5 39 56-94 8-47 (66)
412 3sz7_A HSC70 cochaperone (SGT) 26.6 1.9E+02 0.0066 23.0 7.5 91 65-161 13-106 (164)
413 3ct5_A Morphogenesis protein 1 26.2 48 0.0016 27.6 3.3 33 63-95 14-51 (159)
414 3him_A Probable transcriptiona 26.1 98 0.0033 26.1 5.7 60 61-120 16-81 (211)
415 1ug2_A 2610100B20RIK gene prod 26.0 2E+02 0.0068 21.2 6.2 17 63-79 37-53 (95)
416 4g26_A Pentatricopeptide repea 26.0 3.2E+02 0.011 27.3 10.2 88 65-159 107-200 (501)
417 2fbn_A 70 kDa peptidylprolyl i 25.4 2E+02 0.007 23.8 7.6 85 71-161 46-149 (198)
418 4f3v_A ESX-1 secretion system 24.7 4E+02 0.014 24.3 11.5 94 62-161 100-198 (282)
419 1v32_A AT5G08430, hypothetical 24.1 39 0.0013 25.7 2.2 23 59-81 33-55 (101)
420 2nxp_A Transcription initiatio 23.8 1.3E+02 0.0044 24.8 5.5 50 127-177 47-98 (156)
421 1na0_A Designed protein CTPR3; 23.6 2.1E+02 0.0072 20.7 7.7 89 67-161 13-104 (125)
422 1hxi_A PEX5, peroxisome target 22.6 1.5E+02 0.0051 22.6 5.6 91 65-161 19-112 (121)
423 3gyz_A Chaperone protein IPGC; 22.0 70 0.0024 26.0 3.6 114 56-178 1-114 (151)
424 1zvu_A Topoisomerase IV subuni 21.6 4.6E+02 0.016 27.6 10.1 75 441-518 553-633 (716)
425 2vgx_A Chaperone SYCD; alterna 21.4 2.6E+02 0.0091 22.0 7.2 90 66-161 24-116 (148)
426 3net_A Histidyl-tRNA synthetas 20.7 1.6E+02 0.0054 29.4 6.5 30 51-80 147-178 (465)
427 2j49_A Transcription initiatio 20.4 2.6E+02 0.009 22.7 6.7 34 126-160 29-62 (148)
428 1x2l_A CUT-like 2, homeobox pr 20.3 2.8E+02 0.0097 20.9 9.4 78 60-158 16-93 (101)
429 3mkq_B Coatomer subunit alpha; 20.2 1.7E+02 0.0057 24.8 5.5 54 96-159 6-59 (177)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9e-47 Score=387.91 Aligned_cols=381 Identities=17% Similarity=0.273 Sum_probs=240.6
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 008717 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKF 141 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~ 141 (556)
.++|++|+|+|||+|+||.+++.+|++|++++++. ....+...++++.|+.++.+-+++
T Consensus 7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~w~~~~~l~~~~-------------------- 65 (410)
T 1vyh_C 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-ELDKKYAGLLEKKWTSVIRLQKKV-------------------- 65 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-chhhhhhchhhhhhhheeeHHHHH--------------------
Confidence 47799999999999999999999999999988765 455677888999998866532221
Q ss_pred HHHHhcCChHHHHHHHhhcccccccChhhHHHhhhccccCCcccccCCCCCCchhHHHHHHHHHHHHhcCCCCccCCcch
Q 008717 142 LELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKLQKLLPASVVIPEKR 221 (556)
Q Consensus 142 ~ell~~~~~~~a~~~L~~~l~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~r 221 (556)
.++... ..+ +++++.... +.+ .. .....| .|... +...
T Consensus 66 ~~~~~~--~~~----~~~~~~~~~--~~~---------~~-----~~~~~~------------------~~~~~--~~~~ 103 (410)
T 1vyh_C 66 MELESK--LNE----AKEEFTSGG--PLG---------QK-----RDPKEW------------------IPRPP--EKYA 103 (410)
T ss_dssp ------------------------------------------------CCC------------------CCCSS--CSCE
T ss_pred HHHHHH--HHH----HHHHHhccC--Ccc---------cc-----CCcccc------------------ccCCC--ceEe
Confidence 111000 000 000000000 000 00 000000 00000 0000
Q ss_pred HHHHHHHHHhhccccceeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 008717 222 LEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (556)
Q Consensus 222 l~~ll~~~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd 300 (556)
+ ..+........|++.....++...|.....|+.. .+....+.+|.+.|.+++|+|+|++|++|+.|++|++||
T Consensus 104 l-----~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 L-----SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp E-----ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred e-----cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 0 0011122233344433333333344444333332 456788999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC
Q 008717 301 VKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380 (556)
Q Consensus 301 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 380 (556)
+.+. .....+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.++++|+.|
T Consensus 179 ~~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 179 FQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp TTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9865 4667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEeecccCCCeeEEEEccC--------------------CCEEEEEeCCCeEEEEECCCCe--eeee
Q 008717 381 KSICLWDLDGRELESWKGQKTLRISDMAITDD--------------------GKRIISICREAAILLLDREANF--ERWI 438 (556)
Q Consensus 381 g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~--------------------g~~l~~~~~d~~I~i~d~~~~~--~~~~ 438 (556)
+.|++||+++.........|...|.+++|+|+ |.++++|+.|+.|++||++++. ..+.
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 99999999887766666666679999999996 6789999999999999999987 6677
Q ss_pred ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+|...|++++|+|+|++|++|+.|+.|++||+.++ +++..+.+|...+.. +.| +|++.+|++|+.||+|++|+++
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~--l~~-~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTS--LDF-HKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEE--EEE-CSSSSCEEEEETTSEEEEEC--
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEE--EEE-cCCCCEEEEEeCCCcEEEEeCC
Confidence 89999999999999999999999999999999988 889999999988655 556 9999999999999999999863
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-40 Score=328.56 Aligned_cols=260 Identities=15% Similarity=0.178 Sum_probs=233.3
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
+..+++++|.+.|.+++|+|+|++|++|+.||+|++||+.++ .....+..|..+|.+++|+|++++|++|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 456789999999999999999999999999999999999876 56678889999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEcc-CCCEEEEEe
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITD-DGKRIISIC 420 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~ 420 (556)
+||+.+++++..+..|...|.+++|+|+++++++|+.|++|++||++++ .+......|...|.+++|+| ++..+++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999864 55555566666999999999 678999999
Q ss_pred CCCeEEEEECCCCe--eee-eecCCceEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 421 REAAILLLDREANF--ERW-IEEEEVITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 421 ~d~~I~i~d~~~~~--~~~-~~~~~~i~~v~~sp--~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
.|++|++||+++.. ... ..+...+..+.|+| ++.+|++++.|+.|++||++++ +++.++.+|...+.. +.|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~--~~~- 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSF--AVF- 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEE--EEE-
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEE--EEE-
Confidence 99999999998766 233 34567899999987 7789999999999999999998 899999999998655 556
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
+|++.+|++|+.||+|++||+.++++......+.
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence 9999999999999999999999999887766554
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-40 Score=341.47 Aligned_cols=263 Identities=18% Similarity=0.275 Sum_probs=238.6
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+.+|.++|++++|+|++.+|++|+.||+|+|||+.++ .....+.+|.+.|.+++|+|++++|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 35568899999999999999999999999999999999876 455788999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
||+.+++++..+.+|...|.+++|+|+++++++|+.|+.|++||++++........|...|.+++++|++.++++++.|+
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999987665555555666899999999999999999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCC--------------------CCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKD--------------------NKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~--------------------~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
+|++||+.++. ..+..|...|.+++|+|+ |.+|++|+.|+.|++||++++ .++..+.
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~ 335 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 335 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEE
Confidence 99999999887 566789999999999996 679999999999999999998 8999999
Q ss_pred CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
+|...+.. +.| +|+|++|++|+.||.|++||+.+++.......|.+.+.
T Consensus 336 ~h~~~v~~--v~~-~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 336 GHDNWVRG--VLF-HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp CCSSCEEE--EEE-CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEE
T ss_pred CCCCcEEE--EEE-cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE
Confidence 99988655 556 99999999999999999999999988888777776543
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=322.54 Aligned_cols=266 Identities=17% Similarity=0.244 Sum_probs=236.1
Q ss_pred cceeEEecccCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 337 (556)
....+.+++|.+.|++++|+|+ +.+|++|+.|++|+||++.+. .......+.+|...|.+++|++++..+++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 3455677899999999999985 679999999999999999854 34456678999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
|++|++||+.+++.+..+..+...+.+++|+|+++++++|+.||.|++||+++.........+...|.+++|+|+|++|+
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 99999999999999999999988999999999999999999999999999987655544445555899999999999999
Q ss_pred EEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
+++.|+.|++||+++++ ..+.+|..+|++++|+|++++|++++.|+.|++||++++ +.+..+.+|...+.. ++|
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~--~~~- 256 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLN--VAF- 256 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEE--EEE-
T ss_pred EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEE--EEE-
Confidence 99999999999999988 556678999999999999999999999999999999988 889999999988655 566
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
+|++.+|++|+.|++|++||+.+++.+.....+.+.+
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v 293 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV 293 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE
Confidence 9999999999999999999999999888777776544
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-39 Score=320.22 Aligned_cols=268 Identities=15% Similarity=0.199 Sum_probs=238.0
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
+++.+.|..+.+|+-... .......+.+|...|.+++|+|++.++++++.|++|++||+.++ +....+..|.
T Consensus 51 l~tgs~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---~~~~~~~~~~ 122 (321)
T 3ow8_A 51 VVTGSLDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---KQIKSIDAGP 122 (321)
T ss_dssp EEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCT
T ss_pred EEEEcCCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---CEEEEEeCCC
Confidence 455566666666653211 12345578999999999999999999999999999999999876 4567788899
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
..+.+++|+|++++|++++.||.|++||+.+++....+..+...+.+++|+|++++|++|+.||.|++||+++++.....
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987776666
Q ss_pred cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008717 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~ 475 (556)
..+...|.+++|+|++++|++++.|+.|++||+++.. ..+.+|...|.+++|+|++++|++++.|+.|++||+.++ +
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~ 281 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-T 281 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-E
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-E
Confidence 6666699999999999999999999999999999877 566789999999999999999999999999999999998 8
Q ss_pred ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
++.++.+|...+.. +.| +|++++|++++.||.|++||..
T Consensus 282 ~~~~~~~h~~~v~~--v~~-s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 282 CVHTFFDHQDQVWG--VKY-NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECCCSSCEEE--EEE-CTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEcCCCCcEEE--EEE-CCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999988655 566 9999999999999999999963
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.9e-39 Score=316.40 Aligned_cols=268 Identities=23% Similarity=0.418 Sum_probs=238.9
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
......+.+|.+.|.+++|+|+|++|++|+.||.|++|+..++ .....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 3556788999999999999999999999999999999999865 4557788999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
++||+.+++++..+..|...|.+++|+|+++++++|+.|+.|++||++++........+...|.+++|+|+++++++++.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999876665555556668999999999999999999
Q ss_pred CCeEEEEECCCCe--eee-eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC
Q 008717 422 EAAILLLDREANF--ERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (556)
Q Consensus 422 d~~I~i~d~~~~~--~~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (556)
|+.|++||+++++ ... ..+...+..++|+|++++|++++.|+.|++||++++ +.+..+.+|......+...+..++
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCC
Confidence 9999999999887 222 345678999999999999999999999999999998 889999999876555545554678
Q ss_pred CcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 499 QAFIASGSEDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
+.+|++|+.||.|++||+.++++.....++.+.+.
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 283 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEE
Confidence 99999999999999999999999888887776554
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-38 Score=317.34 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=232.7
Q ss_pred CCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
.+.+...++.+|.+.|++++|+|++++|++|+.||+|+|||+.++ .....+..|...|.+++|+|++++|++|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 345677889999999999999999999999999999999999876 45577788999999999999999999999999
Q ss_pred cEEEEECCCC----cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCE
Q 008717 340 AIRRWDVNSG----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 340 ~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
.|++|++.++ .....+.+|...|.++.|++++ .+++++.|+.|++||++++........|...|.+++|+|++++
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999999875 3567788999999999999876 4899999999999999987776666666679999999999999
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++++.|+.|++||++++. ..+..|...|++++|+|++++|++|+.|+.|++||++++ +.+..+..+.....+..+.
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEE
Confidence 9999999999999999887 566789999999999999999999999999999999987 6666665332211223356
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
| +|+|++|++|+.||.|++||+.+++......+|.+.+
T Consensus 278 ~-s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 278 F-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp E-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred E-CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 6 9999999999999999999999998888877777654
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-38 Score=315.58 Aligned_cols=266 Identities=18% Similarity=0.229 Sum_probs=231.6
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC-eeEEEEEecCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGH 316 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~h 316 (556)
++..+.+..+.+|+.. ..+.+..+..|...|.+++|+|+|++|++|+.|+.|++|++.+.. .......+.+|
T Consensus 70 l~s~s~Dg~v~iWd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 70 LLSASQDGKLIIWDSY-------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp EEEEETTTEEEEEETT-------TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC
T ss_pred EEEEeCCCcEEEEECC-------CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC
Confidence 3445556666666433 245678889999999999999999999999999999999997643 23456778899
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 396 (556)
.+.|.++.|++++ .+++++.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++++.....
T Consensus 143 ~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 143 TGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp SSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 9999999999876 489999999999999999999999999999999999999999999999999999999987766655
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
...|...|.+++|+|++++|++++.|++|++||+++.. .....+ ...|++++|+|+|++|++|+.|+.|++||+.+
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 66666699999999999999999999999999999887 333333 34799999999999999999999999999998
Q ss_pred CCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+ +.+..+.+|...+.. +.| +|+|.+|++|+.||.|++||
T Consensus 302 ~-~~~~~~~~h~~~v~~--~~~-s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 A-DRAGVLAGHDNRVSC--LGV-TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp C-CEEEEEECCSSCEEE--EEE-CTTSSCEEEEETTSCEEEEC
T ss_pred C-cEeeEeecCCCcEEE--EEE-cCCCCEEEEEcCCccEEecC
Confidence 8 889999999998665 556 99999999999999999996
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.7e-38 Score=310.59 Aligned_cols=249 Identities=20% Similarity=0.285 Sum_probs=214.1
Q ss_pred ceeEEecccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
....++++|.+.|++++|+|++ ++|++|+.|++|++|++..... ......+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4556789999999999999965 8999999999999999974322 245678899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccC------C
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD------G 413 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~------g 413 (556)
+|++||+.+++++..+.+|...|.+++|+|++.++++|+.|+.|++||+++..+..+..+. ..|.+++|+|. +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHN-DWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCS-SCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccC-CcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999987777666554 48999999985 4
Q ss_pred CEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
..+++++.|+.|++||+++.. ..+.+|...|++++|+|+|++|++++.||.|++||+.++ +.+..+..+. .+ ..
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~-~v--~~ 242 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD-EV--FS 242 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS-CE--EE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC-cE--EE
Confidence 589999999999999999887 566789999999999999999999999999999999988 7777776553 32 33
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
++| +|++.+|++++.+ .+++|++..
T Consensus 243 ~~~-sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 243 LAF-SPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp EEE-CSSSSEEEEEETT-EEEEEEETT
T ss_pred EEE-cCCCCEEEEEcCC-CcEEEEeCc
Confidence 455 7777777666544 377776654
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=316.28 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=207.9
Q ss_pred cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE-EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
..|...|.+++|+|++ .|++|+.||+|+|||+.++.... ....+.+|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3467889999999986 68899999999999999765432 234466899999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEee--cccCCCeeEEEEccC-CCEEEEEeCCC
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDD-GKRIISICREA 423 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~s~~-g~~l~~~~~d~ 423 (556)
+++++..+.+|...|.+++|+|++. .+++++.|+.|++||+++.+..... ..+...+.+++|+|+ ++++++|+.|+
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 9999999999999999999999875 6889999999999999875543332 233347899999995 56889999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
+|++||+++++ ..+.+|...|++++|+|++ ++|++|+.|++|+|||+.++ + +..+.+|...+.. ++| +|++.
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~~~~~H~~~V~~--v~~-sp~~~ 312 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-E-LFRSQAHRDFVRD--ATW-SPLNH 312 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-E-EEEECCCSSCEEE--EEE-CSSST
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-c-EEEEcCCCCCEEE--EEE-eCCCC
Confidence 99999999887 6778899999999999998 57999999999999999887 5 4567899998655 566 88876
Q ss_pred -EEEEeeCCCcEEEEEcCCCce
Q 008717 501 -FIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 501 -~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+|++|+.||+|++|++.++.+
T Consensus 313 ~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEcCCCeEEEEECCCCCC
Confidence 678999999999999988655
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-37 Score=312.36 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=230.9
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
..+....+++|.+.|++++|+|++++||+|+.||+|+|||..++ .....+..|...|.+++|+|++.+|++++.|+.
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 35677889999999999999999999999999999999998866 345667788999999999999999999999999
Q ss_pred EEEEECCCC------cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc--C
Q 008717 341 IRRWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD--D 412 (556)
Q Consensus 341 i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~--~ 412 (556)
+++|++... .....+..|...|.+++|+|++..+++++.|++|++||++++........|...|.+++|+| +
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999998643 34566778999999999999999999999999999999987766555555666899999987 5
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEE
Q 008717 413 GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i 490 (556)
++++++++.|+.|++||+++++ ..+..|...|++++|+|++.+|++++.|+.|++||+++. +.+..+..+.......
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGAS 288 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCccccee
Confidence 7899999999999999999987 556678999999999999999999999999999999987 6676666544322233
Q ss_pred EEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 491 RSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
.+.| +|++.+|++|+.|+.|++||+.++.......+|.+.+
T Consensus 289 ~~~~-s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 289 SVDF-SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329 (354)
T ss_dssp EEEE-CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred EEEE-eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE
Confidence 4566 9999999999999999999999998887777777654
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=311.66 Aligned_cols=255 Identities=20% Similarity=0.309 Sum_probs=216.5
Q ss_pred cceeEEecccCC-cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 262 SQTLQILEAHSD-EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 262 ~~~~~~l~~h~~-~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
..++..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999998 9999999999999999999999999999865322222334789999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC---eEEEeecccCCCeeEEEEccCCCE
Q 008717 341 IRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 341 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
|++||+.++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||+++. ........|...|.+++|+|++++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 999999876 467788899999999999999999999999999999999753 233344455668999999999999
Q ss_pred EEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC--------------cce
Q 008717 416 IISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--------------KLV 477 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~--------------~~~ 477 (556)
|++++.|+.|++||..+.. ..+.+|...|++++|+|+|++|++++.|+.|++||..... +++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999998875 4566789999999999999999999999999999974321 123
Q ss_pred eEEeC-ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 478 SRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 478 ~~~~~-~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
..+.+ |...++. +.| +|++..|++++.|+.|++|+...+
T Consensus 245 ~~~~~~h~~~v~~--v~~-~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 245 CTLSGFHSRTIYD--IAW-CQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEECSSCSSCEEE--EEE-CTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEecCCCCCcEEE--EEE-ecCCCEEEEEeCCCeEEEEEeCCC
Confidence 34444 6666554 556 899999999999999999998754
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-36 Score=304.30 Aligned_cols=273 Identities=16% Similarity=0.252 Sum_probs=221.6
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
.+++.+.+..+.+|+............+...+.+|...|.+++|+|++.+|++|+.|++|++||+.++ .....+.+|
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h 117 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGH 117 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---CEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEEEcCC
Confidence 45566777788888654322222234567789999999999999999999999999999999999876 456778899
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---cCCCceEEEEEecCC----------CeEEEEeCCCcE
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE---KTGVGLISCGWFLDG----------GGIFAGMTDKSI 383 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~----------~~l~~~~~dg~i 383 (556)
...|.+++|+|++++|++++.|++|++||+.. ....... .|...|.+++|+|++ .++++++.||.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999999999999999999999974 4444443 678889999999987 789999999999
Q ss_pred EEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEc
Q 008717 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 384 ~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
++||........+. .|...|.+++|+|+|++|++++.|+.|++||+.... .....+...|.+++|+|++.+++++ .
T Consensus 197 ~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~ 274 (343)
T 2xzm_R 197 KVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T 274 (343)
T ss_dssp EEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E
T ss_pred EEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C
Confidence 99996655444444 445599999999999999999999999999995443 4444566789999999999988765 4
Q ss_pred CCeEEEEEcCCCCccee--EEe-----------CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 462 NQEIHLWSIESDPKLVS--RYK-----------GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 462 dg~I~lwd~~~~~~~~~--~~~-----------~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
|+.|++||+.+. +... .+. +|...+.. ++| +|+|++|++|+.||.|++|++.++
T Consensus 275 d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 275 DQGVKIFNLMTQ-SKAPVCTIEAEPITKAEGQKGKNPQCTS--LAW-NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEESSSC-CSCSEEECCCCSGGGBTTBCCSCCCEEE--EEE-CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEEeCCC-CCCceEEeecCcchhhhhhcCCCCceEE--EEE-CCCCCeEEEecCCceEEEEEEEcc
Confidence 888999999876 4333 333 56555433 566 999999999999999999998764
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-37 Score=312.95 Aligned_cols=253 Identities=18% Similarity=0.299 Sum_probs=205.3
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC----------
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH---------- 330 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~---------- 330 (556)
...+.+++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++ .....+..|...|.+++|+|+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 35677889999999999999999999999999999999998765 33344455555555555554443
Q ss_pred ----------------------------------------EEEEEeCCCcEEEEECCCCcEEEEE-----ecCCCceEEE
Q 008717 331 ----------------------------------------QLLTCGQEEAIRRWDVNSGECLHVY-----EKTGVGLISC 365 (556)
Q Consensus 331 ----------------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i 365 (556)
.|++|+.|++|++||+.+++.+..+ .+|...|.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 4666677777777777777777766 5678889999
Q ss_pred EEec-CCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-ee-eeec-
Q 008717 366 GWFL-DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ER-WIEE- 440 (556)
Q Consensus 366 ~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~-~~~~- 440 (556)
+|++ +++++++|+.|+.|++||++ +.........|...|.+++|+|++++|++++.|++|++||++++. .. +..+
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 9987 88999999999999999997 334444444555699999999999999999999999999999987 22 2221
Q ss_pred ------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE----eCccCceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 441 ------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY----KGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 441 ------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
...|++++|+|+|++|++|+.||.|++||+.++ +.+..+ .+|...+.. +.| +|+|++|++|+.||+
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~v~~--l~~-s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTLQNSHEGRISC--LGL-SSDGSALCTGSWDKN 367 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCSCSSCCCCCCE--EEE-CSSSSEEEEECTTSC
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecccCCCCCceEE--EEE-CCCCCEEEEeeCCCC
Confidence 234899999999999999999999999999887 777666 678888665 555 999999999999999
Q ss_pred EEEEEcCCCc
Q 008717 511 NVPEILLSES 520 (556)
Q Consensus 511 v~iwd~~~~~ 520 (556)
|++|++.+.+
T Consensus 368 i~iW~~~~~~ 377 (380)
T 3iz6_a 368 LKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSSS
T ss_pred EEEEecCCCc
Confidence 9999998754
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-37 Score=308.34 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=228.0
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC---eeEEEEEecC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG---QVSLKHRLSG 315 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~ 315 (556)
++.+.|..+.+|+. .+.+....+..|...|.+++|+|+|.+|++|+.|+.+++|++.... .......+.+
T Consensus 80 ~s~s~Dg~v~vWd~-------~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~ 152 (354)
T 2pbi_B 80 VSSSQDGKVIVWDS-------FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM 152 (354)
T ss_dssp EEEETTSEEEEEET-------TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE
T ss_pred EEEeCCCeEEEEEC-------CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec
Confidence 34444555555542 2356677888899999999999999999999999999999986431 1123456678
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCCCeE
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
|...|.+++|+|++..|++++.|++|++||+.+++++..+.+|...|.+++|+| +++.|++|+.||.|++||++++..
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999999999999999999999999999999999999999999999987 578999999999999999998776
Q ss_pred EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee---cCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
......|...|++++|+|++..+++++.|++|++||+++.. ..... +...+++++|+|++++|++|+.|+.|++||
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEE
Confidence 66666666699999999999999999999999999999887 32222 234689999999999999999999999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
+.++ +.+..+.+|...+.. +.| +|+|++|++|+.||+|++|+
T Consensus 313 ~~~~-~~~~~l~~h~~~v~~--l~~-spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 313 VLKG-SRVSILFGHENRVST--LRV-SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTTC-SEEEEECCCSSCEEE--EEE-CTTSSCEEEEETTSEEEEEC
T ss_pred CCCC-ceEEEEECCCCcEEE--EEE-CCCCCEEEEEcCCCCEEecC
Confidence 9988 888999999998665 556 99999999999999999995
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-36 Score=308.58 Aligned_cols=241 Identities=20% Similarity=0.385 Sum_probs=210.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (556)
.|.+++|+|+|++||+|+.|++|+|||+.++ +....+.+|...|.+++|+|++++|++++.|++|++||+.++++..
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 4999999999999999999999999999865 5667889999999999999999999999999999999999999888
Q ss_pred EEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEee-------cccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 354 VYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK-------GQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
.+. +...+.+++|+| +++++++|+.|+.|++||++++...... ..|...|.+++|+|+|+++++++.|+.|
T Consensus 202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 776 556799999999 8999999999999999999876544332 3455689999999999999999999999
Q ss_pred EEEECCCCe--------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 426 LLLDREANF--------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 426 ~i~d~~~~~--------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++||+++.. ..+.+|...|.+++|+|++.+|++|+.|+.|++||+.++ +.+..+.+|...+..+.
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~ 359 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVA 359 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEE
Confidence 999997632 355678899999999999999999999999999999998 88999999999877654
Q ss_pred Eee---cCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 492 SCF---GGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 492 ~~~---~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+.. ++|++.+|++|+.||+|++|++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 432 2468999999999999999998654
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=303.56 Aligned_cols=251 Identities=18% Similarity=0.268 Sum_probs=208.8
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
..+|.+.|.+++|+|+|++||+|+.|++|++|++.++ .......+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 4789999999999999999999999999999999854 345677889999999999999999999999999999999998
Q ss_pred CC---cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE--EEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 348 SG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL--ESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 348 ~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
++ .++..+..|...|.+++|+|++++|++++.|+.|++||.++... ......|...|.+++|+|+|++|++++.|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 76 35667888999999999999999999999999999999986542 23344555699999999999999999999
Q ss_pred CeEEEEECCCCe-----------------eeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc---c-----
Q 008717 423 AAILLLDREANF-----------------ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK---L----- 476 (556)
Q Consensus 423 ~~I~i~d~~~~~-----------------~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~---~----- 476 (556)
++|++||..... .... .|...|.+++|+|++..|++++.|+.|++|+...... .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 999999964321 1111 2778899999999999999999999999999875411 1
Q ss_pred eeEEeCccCceeEEEEeecCCCC-cEEEEeeCCCcEEEEEcCCCcee
Q 008717 477 VSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~-~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
.....+|...+.. +.| +|++ .+|++|+.||+|++|++.+++..
T Consensus 296 ~~~~~~h~~~V~~--v~~-~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 296 AHLHQAHSQDVNC--VAW-NPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEETTSSSSCEEE--EEE-CSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeecccccCcEeE--eEE-eCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 1223578877555 556 8887 59999999999999999887653
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-36 Score=297.61 Aligned_cols=274 Identities=10% Similarity=0.130 Sum_probs=225.5
Q ss_pred eeecCCCCceeeecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
.|++.....++...|.....|+.. ...+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++ .....+.+|
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h 96 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAH 96 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC---cEEEEEeCC
Confidence 344443333333334443333333 4567889999999999999999999999999999999999876 456778899
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCC-eE
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR-EL 393 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~ 393 (556)
...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+++|+| ++..|++|+.|+.|++||++.. ..
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 999999999999999999999999999999887 45677889999999999999 6789999999999999999753 33
Q ss_pred EEeecccCCCeeEEEEcc--CCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 394 ESWKGQKTLRISDMAITD--DGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~--~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
......+...+..+.|+| ++.++++++.|++|++||++++. ..+.+|...|++++|+|++++|++|+.||.|++||
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 444455555899999987 67899999999999999999988 66778999999999999999999999999999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCc--EEEEeeCCCcEEEEEcCCC
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQA--FIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~sgs~dg~v~iwd~~~~ 519 (556)
+.++ +++..+..|...++. +.+ +|++. ++++|+.|| +.+|++.+.
T Consensus 257 ~~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 257 SSTY-KVEKTLNVGLERSWC--IAT-HPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp TTTC-CEEEEECCSSSSEEE--EEE-CTTCGGGCEEEEETTE-EEEEECC--
T ss_pred CCCC-ceeeeccCCCccEEE--EEE-CCCCCceEEEEecCCc-eEEEEeccC
Confidence 9998 899999999888665 555 56554 577776555 777777653
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-36 Score=307.72 Aligned_cols=256 Identities=23% Similarity=0.390 Sum_probs=218.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC------------------CCeEEEEeCCCCCE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR------------------KPVFTVSWSPNDHQ 331 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~l~~s~~~~~ 331 (556)
+|.+.|.+++|+|||++||+|+ ++++++|++.++. ....+..|. ..|.+++|+|++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS---LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC---EEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC---EEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 6999999999999999999986 7899999998763 333444332 34999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++........+. .+.+++|+|
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~~~ 216 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSP 216 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEECS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC-CcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999876655444443 799999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCe--eee-------eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC--------
Q 008717 412 -DGKRIISICREAAILLLDREANF--ERW-------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-------- 473 (556)
Q Consensus 412 -~g~~l~~~~~d~~I~i~d~~~~~--~~~-------~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~-------- 473 (556)
+++++++++.|+.|++||++++. ..+ .+|...|++++|+|+|++|++++.|+.|++||+++.
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 89999999999999999999876 222 467889999999999999999999999999999753
Q ss_pred ---CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 474 ---PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 474 ---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
..+...+.+|...+.. ++| +|++.+|++|+.||.|++||+.+++......+|.+.+.
T Consensus 297 ~~~~~~~~~~~~h~~~v~~--~~~-~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVLS--VAT-TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp ----CEEEEEECCSSCEEE--EEE-CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCcceEEEecccCcEEE--EEE-CCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 1345677889887554 556 89999999999999999999999998888877776553
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-36 Score=324.25 Aligned_cols=277 Identities=15% Similarity=0.245 Sum_probs=224.4
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec----
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS---- 314 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~---- 314 (556)
...+.+..+.+|+. .+.++...+.+|.+.|++++|+|+|++||+|+.|++|++||+.++. ....+.
T Consensus 164 ~s~s~D~~v~lwd~-------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~---~~~~~~~~~~ 233 (611)
T 1nr0_A 164 ISGSDDNTVAIFEG-------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSL 233 (611)
T ss_dssp EEEETTSCEEEEET-------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTS
T ss_pred EEEeCCCeEEEEEC-------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc---Eeeeeccccc
Confidence 34444555555542 2356778899999999999999999999999999999999998663 344553
Q ss_pred ---CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE------------------------------------
Q 008717 315 ---GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY------------------------------------ 355 (556)
Q Consensus 315 ---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------ 355 (556)
+|.+.|.+++|+|++++|++++.|++|++||+.+++++..+
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 79999999999999999999999999999999987765433
Q ss_pred -------ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee-c-----------------------------
Q 008717 356 -------EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-G----------------------------- 398 (556)
Q Consensus 356 -------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~----------------------------- 398 (556)
.+|...|++++|+|++++|++++.|+.|++||+.++...... .
T Consensus 314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w 393 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEe
Confidence 467889999999999999999999999999998754322110 0
Q ss_pred ----------------------------------------------------ccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 399 ----------------------------------------------------QKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 399 ----------------------------------------------------~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
.+...+.+++|+|||+++++|+.|++|+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~ 473 (611)
T 1nr0_A 394 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH 473 (611)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred ecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEE
Confidence 0112478899999999999999999999
Q ss_pred EEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE--EeCccCceeEEEEeecCCCCcE
Q 008717 427 LLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR--YKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 427 i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
+||+.+.. .....|...|++++|+|+|++|++++.|+.|++||+.+..+++.. +.+|...+.. ++| +|||++
T Consensus 474 lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~--v~f-spdg~~ 550 (611)
T 1nr0_A 474 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC--VSW-SPDNVR 550 (611)
T ss_dssp EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE--EEE-CTTSSE
T ss_pred EEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE--EEE-CCCCCE
Confidence 99998765 233678999999999999999999999999999999873255543 3458888655 666 999999
Q ss_pred EEEeeCCCcEEEEEcCCCc-ee-eeecCC
Q 008717 502 IASGSEDSQNVPEILLSES-VA-AAASSL 528 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~-~~-~~~~~~ 528 (556)
|++|+.|++|++|++.++. .. ....+|
T Consensus 551 lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 551 LATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred EEEEECCCcEEEEECCCcccccchhhccC
Confidence 9999999999999998765 22 344455
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-35 Score=297.12 Aligned_cols=257 Identities=19% Similarity=0.257 Sum_probs=217.0
Q ss_pred cceeEEecccCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEEeecCC----eeEEEEEecCCCCCeEEEEeCCCCCE
Q 008717 262 SQTLQILEAHSDEVWFLQF-----SH-DGKYLASSSKDQSAIIWEVKEDG----QVSLKHRLSGHRKPVFTVSWSPNDHQ 331 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~-----sp-~g~~las~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~ 331 (556)
......+++|.+.|++++| ++ ++++|++|+.|++|++||+.+.. .......+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4567789999999999999 77 99999999999999999997532 12456778999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee--cccCCCeeEEEE
Q 008717 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAI 409 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~ 409 (556)
+++++.|++|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+....... ..+...|.+++|
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999865544433 244558999999
Q ss_pred ccCC----------CEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 410 TDDG----------KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 410 s~~g----------~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
+|++ .++++++.|+.|++||..... ..+..|...|++++|+|+|++|++|+.|+.|++||+.+......
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 9987 789999999999999955444 56678999999999999999999999999999999965424555
Q ss_pred EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
.+. +...+. .++| +|++.+++++ .|+.|++|++.+++...
T Consensus 251 ~~~-~~~~v~--~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 251 EFD-AGSTIN--QIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EEE-CSSCEE--EEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred eec-CCCcEE--EEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence 553 333433 3566 9999988755 57889999998776543
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.5e-36 Score=295.09 Aligned_cols=250 Identities=13% Similarity=0.240 Sum_probs=208.6
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeCCCcEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIR 342 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~ 342 (556)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+. .......+.+|.++|.+++|+|+ +++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 3467899999999999999999999999999999999743 22456788999999999999874 89999999999999
Q ss_pred EEECCCCc--EEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCCe--EEEeecccCCCeeEEEEccC----
Q 008717 343 RWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDD---- 412 (556)
Q Consensus 343 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~v~~s~~---- 412 (556)
+||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++.. .......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56677889999999999997 8999999999999999997542 12233445558999999997
Q ss_pred ---------CCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCC---CEEEEEEcCCeEEEEEcCCCC
Q 008717 413 ---------GKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDN---KYLLVNLINQEIHLWSIESDP 474 (556)
Q Consensus 413 ---------g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~---~~l~~~~~dg~I~lwd~~~~~ 474 (556)
+++|++++.|++|++||+++.. ..+.+|...|.+++|+|++ .+|++++.|++|++||+++..
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998753 3456789999999999985 899999999999999998741
Q ss_pred c--ceeEE--eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 475 K--LVSRY--KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 475 ~--~~~~~--~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
. ....+ ..|...++. +.| +|+|++|++++.||.|++|+...
T Consensus 241 ~~~~~~~~~~~~~~~~v~~--~~~-s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDVLWR--ASW-SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEESSSSCCSSCEEE--EEE-CSSSCCEEEEETTSCEEEEEECT
T ss_pred CccceeeeecccCCCcEEE--EEE-CCCCCEEEEEcCCCcEEEEEECC
Confidence 1 11223 456665444 666 99999999999999999999763
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-36 Score=325.38 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=219.8
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 338 (556)
.+....+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|.+++|+|++++|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence 467788999999999999999999999999999999999975432 3456788999999999999999999998875
Q ss_pred -CcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEE
Q 008717 339 -EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 339 -g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
+.|++|| +++....+.+|...|.+++|+|++. .|++|+.|++|++||..+.+.......|...|.+++|+|+|++|
T Consensus 128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence 3677777 5667778889999999999999987 59999999999999998877666666677799999999999999
Q ss_pred EEEeCCCeEEEEECCCCe-e-eee-------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee---------
Q 008717 417 ISICREAAILLLDREANF-E-RWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--------- 478 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~-~-~~~-------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~--------- 478 (556)
++++.|++|++||..+++ . .+. +|...|.+++|+|+|++|++++.|++|++||+.++ +.+.
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE 284 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc
Confidence 999999999999998876 2 231 68999999999999999999999999999999876 4433
Q ss_pred ----------------------------------EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 479 ----------------------------------RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 479 ----------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
.+.+|...+.. ++| +|+|++|++++.|++|++||+.++.....
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~--l~~-spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA--LSS-SADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE--EEE-CTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE--EEE-eCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 33467766544 556 99999999999999999999998876543
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=290.95 Aligned_cols=264 Identities=18% Similarity=0.316 Sum_probs=225.2
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (556)
..+.+..+.+|+.. ..+....+.+|...|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...
T Consensus 40 s~~~dg~i~iw~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~ 109 (312)
T 4ery_A 40 SSSADKLIKIWGAY-------DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNY 109 (312)
T ss_dssp EEETTSCEEEEETT-------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred EeeCCCeEEEEeCC-------CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---cEEEEEcCCCCC
Confidence 34444555555422 35667788999999999999999999999999999999999876 456778899999
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe-EEEeec
Q 008717 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWKG 398 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 398 (556)
|.+++|+|++++|++|+.|+.|++||+++++++..+..|..+|.+++|+|+++++++++.||.|++||++++. +..+..
T Consensus 110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 189 (312)
T 4ery_A 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189 (312)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654 444445
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCce---EEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVI---TSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i---~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.+...+..++|+|+++++++++.|+.|++||+++++ ..+..|...+ ......+++.+|++|+.||.|++||+.++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 555589999999999999999999999999999987 4444554433 22333467899999999999999999998
Q ss_pred CcceeEEeCccCceeEEEEeecCCCCcEEEEee--CCCcEEEEEcC
Q 008717 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS--EDSQNVPEILL 517 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~ 517 (556)
+.+..+.+|...+.. +.| +|++.++++++ .|++|++|+..
T Consensus 270 -~~~~~~~~h~~~v~~--~~~-~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 -EIVQKLQGHTDVVIS--TAC-HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -CEEEEECCCSSCEEE--EEE-CSSSSEEEEEECTTTCCEEEEECC
T ss_pred -hhhhhhhccCCcEEE--Eee-cCcCCceEEEEccCCccEEEecCC
Confidence 899999999988554 566 99999999987 69999999864
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=295.19 Aligned_cols=252 Identities=19% Similarity=0.265 Sum_probs=205.9
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe-cC-CCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SG-HRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
.+++..+++|.++|++++|+|+ +||+|+.|++|++||+.++. ......+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 3567889999999999999988 99999999999999998542 2344455 44 999999999999999999999999
Q ss_pred cEEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-C---eEEEeecccCCCeeEEE
Q 008717 340 AIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-R---ELESWKGQKTLRISDMA 408 (556)
Q Consensus 340 ~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~---~~~~~~~~~~~~v~~v~ 408 (556)
+|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++. + +.......|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999843 456778889999999999999999999999999999999942 1 33344455566899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCC--CCEEEEEEcCCeEEEEEcCCCC-------c
Q 008717 409 ITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDP-------K 475 (556)
Q Consensus 409 ~s~~g~~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~--~~~l~~~~~dg~I~lwd~~~~~-------~ 475 (556)
|+|++.+|++++.|++|++||..+.. ..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++. .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 99999999999999999999988763 456679999999999998 7789999999999999986531 1
Q ss_pred ceeEEeC-ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 476 LVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 476 ~~~~~~~-~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
....+.+ |...++. +.| ++++ +|++++.||.|++|+..++.
T Consensus 241 ~~~~~~~~h~~~v~~--v~~-s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 241 CEAILPDVHKRQVYN--VAW-GFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEEECCSCCSSCEEE--EEE-CTTS-CEEEEETTSCEEEEEEETTE
T ss_pred EeeecccccccceEE--EEE-cCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 2344444 7777655 555 6555 89999999999999998774
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=305.60 Aligned_cols=256 Identities=17% Similarity=0.172 Sum_probs=206.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC--------CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.|...|.+++|+|||++|++++ |+++++||.... ...........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677899999999999999887 778888874310 0000111123356789999999985 78899999999
Q ss_pred EEEECCCCcEEEE----EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EE
Q 008717 342 RRWDVNSGECLHV----YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RI 416 (556)
Q Consensus 342 ~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l 416 (556)
+|||+.+++.+.. ..+|...|++++|+|++++|++|+.|+.|++||+++++.......|...|++++|+|++. .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999999875443 347899999999999999999999999999999998877776667777999999999985 78
Q ss_pred EEEeCCCeEEEEECCCCe-e-ee--eecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 417 ISICREAAILLLDREANF-E-RW--IEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~-~-~~--~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++++.|++|++||+++++ . .+ ..+...+++++|+|+ +++|++|+.||.|++||++++ +++.++.+|...+..
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~-- 262 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTG-- 262 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEE--
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEE--
Confidence 999999999999999887 2 22 345667999999995 578899999999999999998 899999999998665
Q ss_pred EeecCCCC-cEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 492 SCFGGFEQ-AFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 492 ~~~~s~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
++| +|++ ++|++|+.|++|+|||+.++++.. ..+|.+.|
T Consensus 263 v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~~V 302 (344)
T 4gqb_B 263 LVF-SPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRDFV 302 (344)
T ss_dssp EEE-CSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSSCE
T ss_pred EEE-ccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCCCE
Confidence 566 8987 589999999999999999987654 45565544
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-36 Score=304.40 Aligned_cols=250 Identities=12% Similarity=0.103 Sum_probs=204.9
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE-EEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
.....+|...|.+++|+|++.+ ++++.||+|+|||+.++.... ......+|...|.+++|+|++++|++|+.|+.|++
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3445579999999999999864 567789999999998654321 12345689999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEee--cccCCCeeEEEEccCC-CEEEEE
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDDG-KRIISI 419 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~s~~g-~~l~~~ 419 (556)
||+.+++++..+..|...|.+++|+|++. .+++++.||.|++||+++.+..... ..+...+.+++|+|++ .++++|
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence 99999999999999999999999999875 7899999999999999865443322 2344479999999975 688999
Q ss_pred eCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 420 CREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
+.|+.|++||+++++ ..+..|...|++++|+|++ ++|++|+.|++|+|||++++ +++.. .+|...+.. ++| +
T Consensus 246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~~-~~H~~~V~~--vaf-s 320 (357)
T 4g56_B 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFRD-LSHRDFVTG--VAW-S 320 (357)
T ss_dssp ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEEE-CCCSSCEEE--EEE-C
T ss_pred ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeEE-CCCCCCEEE--EEE-e
Confidence 999999999999887 6677889999999999987 67999999999999999987 66654 479888655 566 8
Q ss_pred C-CCcEEEEeeCCCcEEEEEcCCCc
Q 008717 497 F-EQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 497 ~-~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
| ++.+|++|+.||+|++|++.+..
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCC
Confidence 7 89999999999999999997643
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-36 Score=297.13 Aligned_cols=272 Identities=15% Similarity=0.215 Sum_probs=207.6
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEe-cc-cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC----eeEEEE
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQIL-EA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----QVSLKH 311 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l-~~-h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~----~~~~~~ 311 (556)
+...+.+..+.+|+.... .......+ .+ |.+.|.+++|+|++++||+|+.|++|+|||+.... ......
T Consensus 27 las~~~D~~i~lw~~~~~-----~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~ 101 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYD-----DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101 (330)
T ss_dssp EEEEESSSCEEEEECSSS-----CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE
T ss_pred EEEEcCCCEEEEEEecCC-----CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE
Confidence 344555666666653321 12344555 44 99999999999999999999999999999985321 234567
Q ss_pred EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC----CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS----GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
.+.+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+..|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 7899999999999999999999999999999999943 256788889999999999999999999999999999999
Q ss_pred CCCC--eEEEeecccCCCeeEEEEccC--CCEEEEEeCCCeEEEEECCCC--------e--eeeee-cCCceEEEEEcCC
Q 008717 388 LDGR--ELESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREAN--------F--ERWIE-EEEVITSFSLSKD 452 (556)
Q Consensus 388 ~~~~--~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~d~~I~i~d~~~~--------~--~~~~~-~~~~i~~v~~sp~ 452 (556)
..+. ........|...|.+++|+|+ +..+++++.|++|++||+.+. . ..+.. |...|.+++|+++
T Consensus 182 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 182 DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred CCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC
Confidence 8754 333444556669999999998 678999999999999998764 1 12222 7889999999976
Q ss_pred CCEEEEEEcCCeEEEEEcCCCC-cce-eEEeCccC-ceeEEEEeecCC--CCcEEEEeeCCCcEEEEEcCC
Q 008717 453 NKYLLVNLINQEIHLWSIESDP-KLV-SRYKGHKR-ARFVIRSCFGGF--EQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 453 ~~~l~~~~~dg~I~lwd~~~~~-~~~-~~~~~~~~-~~~~i~~~~~s~--~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+ +|++++.||.|++||..++. +.. ..+.+|.. .+.. +.| +| ++++|++|+.||+|++|++.+
T Consensus 262 ~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~--v~~-~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 G-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV--VKW-LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp S-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE--EEE-C-----CCEEEEETTSEEEEEEC--
T ss_pred C-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE--EEE-ecCCCceEEEEecCCCcEEEEEecc
Confidence 5 79999999999999998751 122 23356765 5544 455 77 789999999999999999865
No 29
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-36 Score=299.12 Aligned_cols=247 Identities=18% Similarity=0.253 Sum_probs=205.4
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEE
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw 344 (556)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.++|.+++|+| ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 467899999999999999999999999999999998643 245677899999999999986 48999999999999999
Q ss_pred ECCCC--cEEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCCe-E--EEeecccCCCeeEEEEccC-----
Q 008717 345 DVNSG--ECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE-L--ESWKGQKTLRISDMAITDD----- 412 (556)
Q Consensus 345 d~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~~-~--~~~~~~~~~~v~~v~~s~~----- 412 (556)
|+.++ +....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++.. . ......|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99887 466778889999999999997 7899999999999999998642 2 2334455568999999997
Q ss_pred ------------CCEEEEEeCCCeEEEEECCCC---e--eeeeecCCceEEEEEcCCC----CEEEEEEcCCeEEEEEcC
Q 008717 413 ------------GKRIISICREAAILLLDREAN---F--ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 413 ------------g~~l~~~~~d~~I~i~d~~~~---~--~~~~~~~~~i~~v~~sp~~----~~l~~~~~dg~I~lwd~~ 471 (556)
+++|++++.|++|++||++.. . ..+.+|...|.+++|+|++ .+|++++.|++|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 468999999999999999754 2 4456789999999999986 899999999999999997
Q ss_pred CC---CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 472 SD---PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 472 ~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+. ......+..|...++. ++| +|++++|++++.||+|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~--v~~-sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWH--VSW-SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEE--EEE-CTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEE--EEE-cCCCCEEEEEcCCCeEEEEEEC
Confidence 62 1123456677777554 666 9999999999999999999976
No 30
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-35 Score=317.19 Aligned_cols=266 Identities=23% Similarity=0.401 Sum_probs=231.6
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
|++.....++...|.....|+.....+..+.+|...|.+++|+|+|++|++|+.|+.|++||.. + .....+.+|..
T Consensus 311 ~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~---~~~~~~~~~~~ 386 (577)
T 2ymu_A 311 FSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSS 386 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C---CEEEEEECCSS
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C---CEEEEecCCCC
Confidence 3333333334444555555566677788899999999999999999999999999999999964 3 45677889999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
.|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+||++++++++.|+.|++||..++.+..+..
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~ 465 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG 465 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcC
Confidence 9999999999999999999999999995 678888999999999999999999999999999999999987777666665
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
+. ..|.+++|+|++++|++++.|+.|++||..... ..+.+|...|++++|+|+|++|++++.|+.|++||. ++ +++
T Consensus 466 ~~-~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~-~~~ 542 (577)
T 2ymu_A 466 HS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLL 542 (577)
T ss_dssp CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS-CEE
T ss_pred CC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC-CEE
Confidence 54 499999999999999999999999999976554 677789999999999999999999999999999996 45 789
Q ss_pred eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
..+.+|...+.. +.| +|||++|++++.|++|++||
T Consensus 543 ~~~~~h~~~v~~--~~f-s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 543 QTLTGHSSSVWG--VAF-SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECCSSCEEE--EEE-CTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCCEEE--EEE-cCCCCEEEEEeCCCEEEEeC
Confidence 999999998665 566 99999999999999999997
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.3e-35 Score=312.96 Aligned_cols=282 Identities=21% Similarity=0.371 Sum_probs=241.8
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
|++.....++...+.....|..+.+.+..+.+|.+.|++++|+|++++|++++.|++|++||.... ....+.+|..
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~~~~~~ 345 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTLTGHSS 345 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----EEEEECCCSS
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEEeCCCC
Confidence 333333333344444555555667888899999999999999999999999999999999998642 3466789999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
.|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||..++.+..+..
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~ 424 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 424 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC
Confidence 9999999999999999999999999995 678889999999999999999999999999999999999987766666555
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
+ ...|++++|+|+++++++++.|+.|++||..... ..+..|...|++++|+|++++|++++.|+.|++||. ++ +++
T Consensus 425 ~-~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~-~~~ 501 (577)
T 2ymu_A 425 H-SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLL 501 (577)
T ss_dssp C-SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS-CEE
T ss_pred C-CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC-CEE
Confidence 4 4599999999999999999999999999986665 677789999999999999999999999999999995 45 789
Q ss_pred eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
..+.+|...+.. ++| +|+|++|++++.||.|++||. +++......+|.+.+
T Consensus 502 ~~~~~h~~~v~~--l~~-s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v 552 (577)
T 2ymu_A 502 QTLTGHSSSVRG--VAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 552 (577)
T ss_dssp EEEECCSSCEEE--EEE-CTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCE
T ss_pred EEEeCCCCCEEE--EEE-cCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCE
Confidence 999999998655 566 999999999999999999996 566666777776554
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-36 Score=305.59 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=207.7
Q ss_pred cccCCcEEEEEEccCCCEEEEEeC------CCcEEEEEeecCCee-EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSK------DQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~------dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+|...|++++|||||++||+|+. |+.|++|+..++... .......+|...|.+++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 579999999999999999999997 778999987654221 12233456889999999999875 5667889999
Q ss_pred EEEECCCCcEEE----EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EE
Q 008717 342 RRWDVNSGECLH----VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RI 416 (556)
Q Consensus 342 ~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l 416 (556)
++||+.+++... ...+|...|.+++|+|++++|++|+.|+.|++||++++........|...|++++|+|++. .+
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998887543 3346889999999999999999999999999999998877766666777999999999885 78
Q ss_pred EEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 417 ISICREAAILLLDREANF----ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++++.|+.|++||+++++ .....+...+++++|+|+ +.+|++|+.|+.|++||++++ +.+..+.+|...+..
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~-- 274 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITG-- 274 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEE--
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEE--
Confidence 999999999999999877 223346778999999997 468999999999999999998 899999999998665
Q ss_pred EeecCCCC-cEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 492 SCFGGFEQ-AFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 492 ~~~~s~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
++| +|++ ++|++|+.||+|+|||+.++++.... +|.+.|
T Consensus 275 l~~-sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V 314 (357)
T 4g56_B 275 LAY-SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFV 314 (357)
T ss_dssp EEE-CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCE
T ss_pred EEE-cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCE
Confidence 566 8876 68999999999999999998876543 455443
No 33
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-34 Score=287.41 Aligned_cols=253 Identities=17% Similarity=0.253 Sum_probs=191.0
Q ss_pred ceeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC
Q 008717 263 QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (556)
....+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+... ......+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 445679999999999999997 68999999999999999985432 245677899999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCe---------------------------------------------E
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG---------------------------------------------I 374 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~---------------------------------------------l 374 (556)
.|++|+...+........+...+..+.+++++.. +
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999999887766555444444444444444444 4
Q ss_pred EEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCC
Q 008717 375 FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDN 453 (556)
Q Consensus 375 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~ 453 (556)
++++.|+.|++||+++.........+...|++++|+|++++|++++.|+.|++||+++.. .....+...+.++.|+|++
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 268 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 268 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred EEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence 455555555555555544444444555678888888888888888888888888888877 5555566778888888877
Q ss_pred CEEEEEEcCCeEEEEEcCCCCcceeEEe---------CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 454 KYLLVNLINQEIHLWSIESDPKLVSRYK---------GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 454 ~~l~~~~~dg~I~lwd~~~~~~~~~~~~---------~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.++ +++.|+.|++||+++. ..+..+. +|...+.. ++| +|+|++|++|+.||.|+|||+.+|.
T Consensus 269 ~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~--l~~-s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 269 YWL-CAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTS--LAW-SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEE-EEEETTEEEEEETTTT-EEEEEECCC-------CCCCCEEE--EEE-CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cee-eccCCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEE--EEE-CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 654 4455888888888776 5554443 45556444 566 9999999999999999999999875
No 34
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-34 Score=288.71 Aligned_cols=257 Identities=14% Similarity=0.196 Sum_probs=219.4
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC-eeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeCCCcE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAI 341 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 341 (556)
...+.+|.+.|.+++|+|++++||+|+.||.|++||+.++. .......+.+|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35678999999999999999999999999999999998643 2356677889999999999999 69999999999999
Q ss_pred EEEECCCC---------cEEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCCeEE-Ee------------e
Q 008717 342 RRWDVNSG---------ECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRELE-SW------------K 397 (556)
Q Consensus 342 ~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~-~~------------~ 397 (556)
++||+.++ +.+..+..|...|.+++|+|+ +.++++++.||.|++||+++.... .+ .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888899999999999999 999999999999999999753321 11 1
Q ss_pred cccCCCeeEEEEccC---CCEEEEEeCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCC----CEEEEEEcCCeEE
Q 008717 398 GQKTLRISDMAITDD---GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIH 466 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~---g~~l~~~~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~----~~l~~~~~dg~I~ 466 (556)
..+...+.+++|+|+ +..+++++.++.+.+|+...+. ..+..|...|++++|+|++ ++|++++.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 134458999999997 8999999999999888887765 3445688999999999998 8999999999999
Q ss_pred EEEcCCC---------------------------------------------CcceeEEeCccCceeEEEEeecCCCCcE
Q 008717 467 LWSIESD---------------------------------------------PKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 467 lwd~~~~---------------------------------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
+||++++ .+.+..+.+|...+.. +.| +|++++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~-s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS--VSW-NLTGTI 320 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE--EEE-CSSSCC
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE--EEE-cCCCCE
Confidence 9999763 1456777889888655 556 999999
Q ss_pred EEEeeCCCcEEEEEcCCCceeee
Q 008717 502 IASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
|++|+.||.|++|++.++.....
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEecCCCcEEEEecCcCcchhh
Confidence 99999999999999998776443
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=293.13 Aligned_cols=253 Identities=14% Similarity=0.246 Sum_probs=213.9
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeCCCc
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEA 340 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~ 340 (556)
+++..+.+|.+.|.+++|+|++++||+|+.||.|+|||+... .......+.+|...|.+++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 356778999999999999999999999999999999999842 34677788999999999999987 999999999999
Q ss_pred EEEEECCCCc--EEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCC--eEEEeecccCCCeeEEEEcc---
Q 008717 341 IRRWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITD--- 411 (556)
Q Consensus 341 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~s~--- 411 (556)
|++||+.+++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||++.. ........+...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77788889999999999999 999999999999999999764 22223334555899999999
Q ss_pred ----------CCCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCC---CCEEEEEEcCCeEEEEEcCC
Q 008717 412 ----------DGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 412 ----------~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~---~~~l~~~~~dg~I~lwd~~~ 472 (556)
++.++++++.|+.|++||+++.. ..+..|...|++++|+|+ +++|++++.||.|++||+++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998764 344568899999999999 89999999999999999987
Q ss_pred CCcc--eeE--EeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 473 DPKL--VSR--YKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 473 ~~~~--~~~--~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+... ... ...|...+.. ++| +|++++|++++.||.|++|++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~--~~~-s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWR--ASW-SLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEE--EEE-CSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCccceeeeeccccCCCcEEE--EEE-cCCCCEEEEecCCCcEEEEeCCCC
Confidence 6211 122 2335555443 566 999999999999999999999854
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.6e-34 Score=281.49 Aligned_cols=253 Identities=13% Similarity=0.168 Sum_probs=221.7
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec--CCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+|.+.|.+++|+|++++|++++ ||.|++||+.++........+. .|...|.+++|+|++++|++++.||.|++
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34457999999999999999999998 9999999998765433334444 79999999999999999999999999999
Q ss_pred EECCCCc--EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 344 WDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 344 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
||+.+++ ....+..|...+.+++|+|+++++++++.||.|++||+++.+.......+...|.+++|+|+++++++++.
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 9999887 66777888999999999999999999999999999999987766666666669999999999999999999
Q ss_pred CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 422 d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
|+.|++||+++++ .....+...+.+++|+|+++++++++.++.|++||+.+. + ...+..|...+.. +.| +|+++
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~v~~--~~~-~~~~~ 278 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLS--LKF-AYCGK 278 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEE--EEE-CTTSS
T ss_pred CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-C-eEEEcCCccceeE--EEE-CCCCC
Confidence 9999999999988 556678889999999999999999999999999999886 4 4567788887554 556 99999
Q ss_pred EEEEeeCCCcEEEEEcCCCceeee
Q 008717 501 FIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
+|++++.||.|++|++.+++....
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEecCCCcEEEEECCCCeEEEE
Confidence 999999999999999999887643
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-34 Score=285.33 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=218.2
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+.+|.+.|++++|+|+|++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 34568899999999999999999999999999999999876 466788899999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCC------------------------------------------------------------ceE
Q 008717 344 WDVNSGECLHVYEKTGV------------------------------------------------------------GLI 363 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~------------------------------------------------------------~v~ 363 (556)
||+.+++.+..+. +.. .+.
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 9999887766553 211 677
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecC
Q 008717 364 SCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEE 441 (556)
Q Consensus 364 ~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~ 441 (556)
+++|+|+++++++++.||.|++||+++ .........+...|.+++|+|++++|++++.|+.|++||++++. .....+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 259 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD 259 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC
Confidence 777778888888888889999999986 55555555556689999999999999999999999999999988 5556688
Q ss_pred CceEEEEEcCCCCEEEEEEcCC--------------eEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 442 EVITSFSLSKDNKYLLVNLINQ--------------EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~~dg--------------~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
..+.+++|+|+++++++++.++ .+++||+.++ +.+..+.+|...+.. +.| +|++++|++++.
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~--~~~-s~~~~~l~s~~~ 335 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNT--VAI-SPQGTSYASGGE 335 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEE--EEE-CTTSSEEEEEET
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEE--EEE-CCCCCEEEEEcC
Confidence 9999999999999999999888 8999999998 899999999988655 555 999999999999
Q ss_pred CCcEEEEEcCCCce
Q 008717 508 DSQNVPEILLSESV 521 (556)
Q Consensus 508 dg~v~iwd~~~~~~ 521 (556)
||.|++|++.++..
T Consensus 336 dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 336 DGFIRLHHFEKSYF 349 (369)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCeEEEEECccccc
Confidence 99999999987654
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-33 Score=279.15 Aligned_cols=263 Identities=13% Similarity=0.232 Sum_probs=224.7
Q ss_pred CCceeeecCCCCCCCCCCcceeEEec--ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeE
Q 008717 244 DSDFSLYSDHQCGRNRIPSQTLQILE--AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF 321 (556)
Q Consensus 244 ~~~~~~~~d~~~~~~~~~~~~~~~l~--~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 321 (556)
+..+.+|+..... ....+..+. +|...|.+++|+|++++|++++.|+.|++||+.++. ......+..|...|.
T Consensus 71 dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 71 KGCVKVWDISHPG----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACY 145 (337)
T ss_dssp BSEEEEEETTSTT----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEE
T ss_pred CCeEEEEECCCCC----ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-cceeeecccCCCceE
Confidence 5666666543321 112333333 799999999999999999999999999999998653 235667888999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC
Q 008717 322 TVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (556)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 401 (556)
+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|+++++++++.||.|++||+++..........
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~- 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT- 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887665555443
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEE
Q 008717 402 LRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~ 480 (556)
..+.+++|+|+++++++++.++.|++||+.+.. .....|...|++++|+|++++|++++.||.|++||+.++ +.+..
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-~~~~~- 302 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQ- 302 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEE-
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEE-
Confidence 489999999999999999999999999999988 667788999999999999999999999999999999988 55544
Q ss_pred eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
..|...+.. +.| +|++++|++++.||.|++|++.
T Consensus 303 ~~~~~~v~~--~~~-s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 303 SKESSSVLS--CDI-SVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECSSCEEE--EEE-CTTSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEE--EEE-CCCCCEEEEecCCCeEEEEEEe
Confidence 346666444 556 9999999999999999999963
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.4e-34 Score=310.90 Aligned_cols=249 Identities=21% Similarity=0.288 Sum_probs=212.8
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
.....+.+|.+.|.+++|+|+|++|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 421 ~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 456788999999999999999999999999999999999876 56678889999999999999999999999999999
Q ss_pred EEECCCCcEEEEE---ecCCCceEEEEEecCC--CeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 343 RWDVNSGECLHVY---EKTGVGLISCGWFLDG--GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 343 iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
+||.......... ..|...|.+++|+|++ ..+++++.|+.|++||+++.........|...|++++|+|++++++
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 9998655433332 3577889999999986 5799999999999999998777766666777999999999999999
Q ss_pred EEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC-----------
Q 008717 418 SICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR----------- 485 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~----------- 485 (556)
+++.|+.|++||+++++ .....+...|.+++|+|++.++++++ ++.|++||++++ ..+..+..+..
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC-----------
T ss_pred EEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcccccccccccccccc
Confidence 99999999999999988 44455677899999999998887766 677999999988 77777654321
Q ss_pred ------ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 486 ------ARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 486 ------~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
.+++..+.| +|+|++|++|+.||.|++|++.
T Consensus 656 ~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 656 AATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred ccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence 112344566 9999999999999999999985
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.6e-34 Score=287.09 Aligned_cols=245 Identities=12% Similarity=0.141 Sum_probs=215.3
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
+..|.++|++++|+|++++|++|+.|+.|++||+.++ .......+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 4569999999999999999999999999999999864 334778888999999999999999999999999999999999
Q ss_pred CCcEEEEE--ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 348 SGECLHVY--EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 348 ~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
+++....+ ..|...|.+++|+|+++++++++.|+.|++||++... .......+...|.+++|+|+++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88755444 5688899999999999999999999999999997644 34444555668999999999999999999
Q ss_pred CCeEEEEECC------------------CCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 422 EAAILLLDRE------------------ANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 422 d~~I~i~d~~------------------~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
|+.|++||++ .+. ..+..|...|++++|+|++++|++++.|+.|++||++++ +.+..+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~ 241 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLA 241 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEEc
Confidence 9999999964 333 445578899999999999999999999999999999998 8999999
Q ss_pred CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.|...+.. +.| +|++.+|++| .|+.|++|++.+
T Consensus 242 ~~~~~v~~--~~~-~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 242 SETLPLLA--VTF-ITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CSSCCEEE--EEE-EETTEEEEEE-TTSSCEEEEEET
T ss_pred cCCCCeEE--EEE-ecCCCEEEEE-eCCeEEEEEccC
Confidence 99887555 555 8899988887 999999999988
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.5e-34 Score=288.21 Aligned_cols=260 Identities=15% Similarity=0.096 Sum_probs=217.0
Q ss_pred cceeEEecccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 339 (556)
.+....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.. .......+|...|.+++|+| ++++|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 34566788999999999999999 9999999999999999986543 23333457999999999999 789999999999
Q ss_pred cEEEEECCCCcEEEEEecC---CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-E
Q 008717 340 AIRRWDVNSGECLHVYEKT---GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-R 415 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~ 415 (556)
.|++||+.+ ..+..+..+ ...|.+++|+|+++++++++.|+.|++||+++..+..+..+. ..|.+++|+|+++ +
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~-~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHK-AKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSS-SCEEEEEECSSCTTE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCC-CcEEEEEECCCCCCE
Confidence 999999985 555666544 378999999999999999999999999999877766666544 5999999999999 9
Q ss_pred EEEEeCCCeEEEEECCC----Ce-eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCc---
Q 008717 416 IISICREAAILLLDREA----NF-ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA--- 486 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~----~~-~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~--- 486 (556)
+++++.|+.|++||+++ .. .....|...|++++|+| ++++|++++.|+.|++||++++ +....+.+|...
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccccc
Confidence 99999999999999997 44 45558999999999999 9999999999999999999988 677777665421
Q ss_pred ----e--------eEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 487 ----R--------FVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 487 ----~--------~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
+ ..+.+.+ +|++++ +|+.||.|++||+.+++.+.....+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~-s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGR-YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp TSCCCCCEECSSSSEEEEEC-BCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred cccceEEeccCCCCceEEEe-cCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 1 1122334 667766 7789999999999999987777653
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-34 Score=290.96 Aligned_cols=278 Identities=10% Similarity=0.105 Sum_probs=229.3
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccC----C---CEEEEEeCCCcEEEEEeecCCe--e
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHD----G---KYLASSSKDQSAIIWEVKEDGQ--V 307 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~----g---~~las~s~dg~i~iwd~~~~~~--~ 307 (556)
.++..+.+..+.+|+..... ...+...+..+.+|...|.+++|+|+ | ++|++++.||.|++|++.++.. .
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp EEEEEETTSEEEEEESBCCT-TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred eEEEEcCCCEEEEEECCCcc-cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 44556667777777654322 12234468888899999999999999 9 9999999999999999987642 0
Q ss_pred EEEEEecCC-----CCCeEEEEeC----CCCCE-EEEEeCCCcEEEEECCC------CcEEE-----EEe-------cCC
Q 008717 308 SLKHRLSGH-----RKPVFTVSWS----PNDHQ-LLTCGQEEAIRRWDVNS------GECLH-----VYE-------KTG 359 (556)
Q Consensus 308 ~~~~~~~~h-----~~~v~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~-------~~~ 359 (556)
.....+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+. .|.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 115667778 5899999999 99999 99999999999999988 66555 664 478
Q ss_pred CceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc---c---CCCeeEEEEccCCCEEEEEeCC---CeEEEEEC
Q 008717 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---K---TLRISDMAITDDGKRIISICRE---AAILLLDR 430 (556)
Q Consensus 360 ~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~---~~~v~~v~~s~~g~~l~~~~~d---~~I~i~d~ 430 (556)
..|.+++|+|++ .+++++.||.|++||+++......... + ...|.+++|+|++++|++++.| +.|++||+
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 899999999999 999999999999999987665554444 4 5689999999999999999999 99999999
Q ss_pred CCCe--eeeee-------------cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe------Cc------
Q 008717 431 EANF--ERWIE-------------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK------GH------ 483 (556)
Q Consensus 431 ~~~~--~~~~~-------------~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~------~~------ 483 (556)
++++ ..+.. |...|.+++|+|++++|++++.||.|++||+.++ +.+..+. +|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILA 344 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCC
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhc
Confidence 9887 44555 8899999999999999999999999999999998 8899998 77
Q ss_pred ---------cCceeEEEEeecCCCC----------cEEEEeeCCCcEEEEEcCCCc
Q 008717 484 ---------KRARFVIRSCFGGFEQ----------AFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 484 ---------~~~~~~i~~~~~s~~~----------~~l~sgs~dg~v~iwd~~~~~ 520 (556)
...+.. +.| +|++ ++|++++.||.|++|++.+++
T Consensus 345 g~~~~~~~~~~~v~~--~~~-~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 345 VDEHGDSLAEPGVFD--VKF-LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp BCTTSCBCSSCCEEE--EEE-ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccccCCceeE--EEe-ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 777555 555 8898 799999999999999998764
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-33 Score=309.26 Aligned_cols=257 Identities=18% Similarity=0.265 Sum_probs=221.2
Q ss_pred eeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
....+++|.+.|++++|+|+ +++|+||+.|++|++|++.+... ......+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 34568899999999999986 47999999999999999975432 1345678899999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee---cccCCCeeEEEEccCC--CE
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITDDG--KR 415 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~s~~g--~~ 415 (556)
|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+....... ..|...|.+++|+|++ ..
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999999776554443 2355579999999987 58
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++++.|++|++||+++.+ ..+.+|...|++++|+|++++|++++.||.|++||++++ +.+..+..+. .+ ..++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~-~v--~~~~ 609 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANS-VI--HALC 609 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSS-CE--EEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC-cE--EEEE
Confidence 9999999999999999887 566789999999999999999999999999999999998 7777766543 33 3356
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
| +|++.++++++ |+.|++||+.++..+....
T Consensus 610 ~-sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 610 F-SPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp E-CSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred E-cCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 6 99999887765 5669999999988765443
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.3e-34 Score=286.80 Aligned_cols=253 Identities=12% Similarity=0.128 Sum_probs=213.0
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
.+..+.+|...|.+++|+|++++|++++.||.|++||+.++ .......+..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 77888999999999999999999999999999999999865 33344556789999999999999999999999999999
Q ss_pred EECCCCcE---EEE-EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC------------------CCeEEEeecccC
Q 008717 344 WDVNSGEC---LHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD------------------GRELESWKGQKT 401 (556)
Q Consensus 344 wd~~~~~~---~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~~~ 401 (556)
||+.++.. ... ...|...|.+++|+|+++++++++.||.|++||++ .+........+.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 99988762 333 35678899999999999999999999999999963 344444444555
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC--CC---
Q 008717 402 LRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES--DP--- 474 (556)
Q Consensus 402 ~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~--~~--- 474 (556)
..|.+++|+|+++++++++.|+.|++||+++++ ..+..|..+|.+++|+|++++++++ .|+.|++|++.+ +.
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 689999999999999999999999999999887 5666788899999999999988888 899999999987 30
Q ss_pred ----------------------------cce------eEE-eCccCceeEEEEeecCCCC---cEEEEeeCCCcEEEEEc
Q 008717 475 ----------------------------KLV------SRY-KGHKRARFVIRSCFGGFEQ---AFIASGSEDSQNVPEIL 516 (556)
Q Consensus 475 ----------------------------~~~------~~~-~~~~~~~~~i~~~~~s~~~---~~l~sgs~dg~v~iwd~ 516 (556)
... ..+ .+|...+.. +.|.+++| .+|++|+.||.|++|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ--ISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE--EEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcce--eEEecCCCcceeeEEEecCCCceEEEEe
Confidence 000 223 488888666 44546787 99999999999999999
Q ss_pred CCCc
Q 008717 517 LSES 520 (556)
Q Consensus 517 ~~~~ 520 (556)
.+++
T Consensus 360 ~~~~ 363 (372)
T 1k8k_C 360 RSLE 363 (372)
T ss_dssp HHHH
T ss_pred cChh
Confidence 8754
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-34 Score=293.81 Aligned_cols=245 Identities=12% Similarity=0.142 Sum_probs=207.3
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.+..| ..+....|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 34445 55666688999999999999999999999865 456677899999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc---cC---------------------C
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---KT---------------------L 402 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~---------------------~ 402 (556)
.+++.+..+..|...|.+++|+|++++|++++.||.|++||++++........ +. .
T Consensus 169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 99999999999999999999999999999999999999999987665444332 11 2
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eee-eecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCCccee
Q 008717 403 RISDMAITDDGKRIISICREAAILLLDREANF--ERW-IEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~-~~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
.+.+++|+|+++++++++.||.|++||++++. ... ..|...|++++|+|+++ +|++++.||.|++||++++..++.
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 45556668899999999999999999999887 222 34678999999999998 999999999999999998745578
Q ss_pred EEeCc-cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 479 RYKGH-KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 479 ~~~~~-~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+.+| ...+ ...+ .+++++|++++.||.|++|++.+.
T Consensus 329 ~~~~~~~~~v---~~~~-~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 329 EFLINEGTPI---NNVY-FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEESTTSCE---EEEE-EETTEEEEEETTTEEEEEEEECCT
T ss_pred hhhccCCCCc---eEEE-eCCCCEEEEecCCccEEEEeccCC
Confidence 88774 4443 3444 458889999999999999998873
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-33 Score=286.28 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=220.5
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecc-cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~-h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
..+.+..+.+|+... .+....+.. |.+.|.+++|+|++++|++|+.||.|++||+.++ .....+.+|..
T Consensus 108 ~~~~d~~v~lw~~~~-------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 177 (401)
T 4aez_A 108 AVALERNVYVWNADS-------GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQA 177 (401)
T ss_dssp EEEETTEEEEEETTT-------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSS
T ss_pred EEECCCeEEEeeCCC-------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCCCC
Confidence 334444555554322 344445544 8999999999999999999999999999999876 45677889999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 397 (556)
.|.+++| ++++|++++.||.|++||++ .+..+..+..|...|.+++|+|++++|++|+.||.|++||+++.......
T Consensus 178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 9999999 56799999999999999998 56778889999999999999999999999999999999999976665555
Q ss_pred cccCCCeeEEEEccCCC-EEEEEe--CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE--cCCeEEEEEcC
Q 008717 398 GQKTLRISDMAITDDGK-RIISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--INQEIHLWSIE 471 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~g~-~l~~~~--~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~--~dg~I~lwd~~ 471 (556)
..+...|.+++|+|++. .+++++ .|+.|++||+.++. .....+...|++++|+|+++++++++ .||.|++||+.
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 55666999999999775 555554 69999999999888 55667888999999999999999954 89999999998
Q ss_pred CCCcce--eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 472 SDPKLV--SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 472 ~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
++ ... ..+.+|...+.. +.| +|++++|++++.||.|++|++.+++.....
T Consensus 336 ~~-~~~~~~~~~~h~~~v~~--~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 336 SS-GLTKQVDIPAHDTRVLY--SAL-SPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp TT-EEEEEEEEECCSSCCCE--EEE-CTTSSEEEEECTTSEEEEEECCC-------
T ss_pred Cc-cceeEEEecCCCCCEEE--EEE-CCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 86 443 346788888665 566 999999999999999999999988876543
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-33 Score=314.58 Aligned_cols=260 Identities=16% Similarity=0.180 Sum_probs=232.5
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
+..+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++ .....+.+|..+|.+++|+|++++|++++.||.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456788999999999999999999999999999999999876 56678889999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEcc-CCCEEEEEe
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITD-DGKRIISIC 420 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~ 420 (556)
+||+.+++.+..+..|...|.+++|+|+++++++++.||.|++||++++ ........+...|.+++|+| ++..+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999864 55555555666899999999 889999999
Q ss_pred CCCeEEEEECCCCe--eeeee-cCCceEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 421 REAAILLLDREANF--ERWIE-EEEVITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 421 ~d~~I~i~d~~~~~--~~~~~-~~~~i~~v~~sp--~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
.||.|++||+.++. ..... +...+.+++|+| ++.++++++.||.|++||+.++ +.+..+.+|...+.. ++|
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~--~~~- 236 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSF--AVF- 236 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEE--EEE-
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEE--EEE-
Confidence 99999999998776 33433 348899999999 9999999999999999999998 889999999888555 555
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCC
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSESVAAAASSLD 529 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 529 (556)
+|++++|++++.||.|++||+.+++.......+.
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 9999999999999999999999988766655443
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-34 Score=298.46 Aligned_cols=259 Identities=14% Similarity=0.100 Sum_probs=210.7
Q ss_pred eeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcE
Q 008717 264 TLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 341 (556)
......+|...|+|++|+| ++++||+|+.||+|+|||+.++.. .....+.+|.+.|++++|+| ++++|++|+.||+|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3445678999999999999 677999999999999999986543 34556778999999999998 68999999999999
Q ss_pred EEEECCCCcEEEEEecC--CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC-EEEE
Q 008717 342 RRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIIS 418 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~ 418 (556)
++||++++........+ ...+.+++|+|++.+|++|+.||.|++||++++.+..+..+ ...|.+++|+|++. ++++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH-KKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCC-SSCEEEEEECTTCSSEEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecc-cceEEeeeecCCCceEEEE
Confidence 99999876544333333 44578899999999999999999999999988776665544 45899999999986 7889
Q ss_pred EeCCCeEEEEECCCCe-----eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC----ceeE
Q 008717 419 ICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR----ARFV 489 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~-----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~----~~~~ 489 (556)
++.|+.|++||+++.. ....+|...|++++|+|+|++|++++.||.|++||+.++ .....+..|.. ....
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEeccccccccccee
Confidence 9999999999998865 233568899999999999999999999999999999988 77777766643 1223
Q ss_pred EEEeecCCCCcEEEEee------------CCCcEEEEEcCCCceeeeec
Q 008717 490 IRSCFGGFEQAFIASGS------------EDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs------------~dg~v~iwd~~~~~~~~~~~ 526 (556)
+...| +|++.++++++ .++.|++||..+++++....
T Consensus 348 ~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 348 IKAAW-HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp CBCEE-CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred EEEEE-cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 34455 66776666654 34679999999999877664
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.2e-34 Score=288.98 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=221.5
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC---eeEEEEEecCCCCCeEEEEeCCC----C---CEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG---QVSLKHRLSGHRKPVFTVSWSPN----D---HQL 332 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~~----~---~~l 332 (556)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.++. .......+.+|..+|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677889999999999998 799999999999999998753 01245677799999999999999 9 999
Q ss_pred EEEeCCCcEEEEECCCCcE-----EEEEecC-----CCceEEEEEe----cCCCe-EEEEeCCCcEEEEECCC------C
Q 008717 333 LTCGQEEAIRRWDVNSGEC-----LHVYEKT-----GVGLISCGWF----LDGGG-IFAGMTDKSICLWDLDG------R 391 (556)
Q Consensus 333 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~dg~i~vwd~~~------~ 391 (556)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ +++++.||.|++||+++ .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999998887 8888888 4899999999 99999 99999999999999976 3
Q ss_pred e-EE-----Eee------cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeee---c---CCceEEEEEcC
Q 008717 392 E-LE-----SWK------GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIE---E---EEVITSFSLSK 451 (556)
Q Consensus 392 ~-~~-----~~~------~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~---~---~~~i~~v~~sp 451 (556)
. +. .+. ..+...|.+++|+|++ .+++++.|+.|++||+++.+ ..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 2 22 332 3345589999999999 99999999999999999887 44555 7 89999999999
Q ss_pred CCCEEEEEEcC---CeEEEEEcCCCCcceeEEeC-------------ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 452 DNKYLLVNLIN---QEIHLWSIESDPKLVSRYKG-------------HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 452 ~~~~l~~~~~d---g~I~lwd~~~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
++++|++++.| +.|++||++++ +.+..+.+ |...+.. ++| +|++++|++++.||.|++||
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMS--LSF-NDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEE--EEE-CSSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEE--EEE-CCCCCEEEEEeCCCeEEEEE
Confidence 99999999999 99999999998 88999988 8887555 566 99999999999999999999
Q ss_pred cCCCceeeeec
Q 008717 516 LLSESVAAAAS 526 (556)
Q Consensus 516 ~~~~~~~~~~~ 526 (556)
+.+++......
T Consensus 320 ~~~~~~~~~~~ 330 (397)
T 1sq9_A 320 VKTKERITTLN 330 (397)
T ss_dssp TTTTEEEEEEE
T ss_pred cCCCceeEEEe
Confidence 99998877776
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.3e-34 Score=283.07 Aligned_cols=261 Identities=12% Similarity=0.059 Sum_probs=222.5
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC-EEEEEeCCCcEEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRR 343 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~i 343 (556)
+....+|.+.|.+++|+|++++|++++.|+.|++|++.++........+..|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 344568999999999999999999999999999999997653334455668999999999999999 9999999999999
Q ss_pred EEC-CCCcEEEEEec--CCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---------CeEEEeecccCCCeeEEEEcc
Q 008717 344 WDV-NSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---------RELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 344 wd~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~v~~s~ 411 (556)
||+ .+++. ..+.. |...|.+++|+| ++.+++++.|+.|++||+++ ........ +...|.+++|+|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 87765 67778 999999999999 99999999999999999875 44333333 445899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-Ce----eeeeecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCC-----CcceeEE
Q 008717 412 DGKRIISICREAAILLLDREA-NF----ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESD-----PKLVSRY 480 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~-~~----~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~-----~~~~~~~ 480 (556)
++ +++++.|+.|++||+++ .. .....+...+.+++|+| +++++++++.||.|++|++... .+....+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999998 44 34456788999999999 9999999999999999999775 3778888
Q ss_pred eCccC---------ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC-Ccccc
Q 008717 481 KGHKR---------ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL-DNFVS 533 (556)
Q Consensus 481 ~~~~~---------~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~ 533 (556)
..|.. .+.. ++| +|++++|++|+.||.|++||+.+++.......+ .+.+.
T Consensus 239 ~~~~~~~~~~~~~~~i~~--~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 298 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNS--IEF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298 (342)
T ss_dssp ECCCCCTTCCSSCCCEEE--EEE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred ecccccccccccceeEEE--EEE-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCce
Confidence 88865 5433 566 999999999999999999999999988877766 65443
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-34 Score=287.11 Aligned_cols=239 Identities=17% Similarity=0.232 Sum_probs=205.5
Q ss_pred cCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEE
Q 008717 271 HSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 271 h~~~V~~~~~sp~----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd 345 (556)
|...|.+++|+|+ |.+|++|+.||.|++||+.++ .....+.+|...|.+++|+| ++++|++++.||.|++||
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 6688999999999 679999999999999999876 45677889999999999999 999999999999999999
Q ss_pred CCCCcEEEEE---ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe--------------------------
Q 008717 346 VNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-------------------------- 396 (556)
Q Consensus 346 ~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------- 396 (556)
+.+++.+..+ ..|...|.+++|+|+++++++++.||.|++||+++......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 9999999888 67899999999999999999999999999999986432211
Q ss_pred --ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe----------------eeeeecCCceEEEEEcCC--CCEE
Q 008717 397 --KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----------------ERWIEEEEVITSFSLSKD--NKYL 456 (556)
Q Consensus 397 --~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~----------------~~~~~~~~~i~~v~~sp~--~~~l 456 (556)
...+...|.+++|+ ++++++++.|+.|++||+.+.. ..+..|...|++++|+|+ +++|
T Consensus 225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 11255689999998 7799999999999999988752 344567888999999999 9999
Q ss_pred EEEEcCCeEEEEEcCCCCcc----eeEEeCc--cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 457 LVNLINQEIHLWSIESDPKL----VSRYKGH--KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~----~~~~~~~--~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
++++.||.|++||+.++ +. ...+.+| ...+.. ++| +|++++|++++.||.|++||+.+
T Consensus 303 ~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEVE-DPHKAKCTTLTHHKCGAAIRQ--TSF-SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECTTSCEEEEECCSS-SGGGCEEEEECCTTCCSCEEE--EEE-CTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEecCCcEEEEECCCC-CCccccceEEcccccCCceEE--EEe-CCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999887 43 3477777 455433 666 99999999999999999999863
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-34 Score=293.90 Aligned_cols=267 Identities=14% Similarity=0.127 Sum_probs=215.1
Q ss_pred CCCCcceeEEe-cccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeec---CCeeEEEEEecCCCCCeEEEEeCCCCCEE
Q 008717 258 NRIPSQTLQIL-EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (556)
Q Consensus 258 ~~~~~~~~~~l-~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 332 (556)
|....+.+..+ ++|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ .|...|.+++|+|++++|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence 45567788888 89999999999999 999999999999999999986 3222223333 499999999999999999
Q ss_pred EEEeCCCcEEEEECC---CCcEEEEEec------------CCCceEEEE--EecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 333 LTCGQEEAIRRWDVN---SGECLHVYEK------------TGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 333 ~s~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
++++.||.|++||+. +++....+.. +...+.++. +++++.++++++.||.|++||+++.....
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999994 5655544332 345566666 55789999999999999999998765544
Q ss_pred eecc--cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-ee-ee-ecCCceEEEEEcC----CCCEEEEEEcCCeEE
Q 008717 396 WKGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANF-ER-WI-EEEEVITSFSLSK----DNKYLLVNLINQEIH 466 (556)
Q Consensus 396 ~~~~--~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~-~~-~~~~~i~~v~~sp----~~~~l~~~~~dg~I~ 466 (556)
.... +...|++++|+|+++++++++.||.|++||++++. .. +. .+...|++++|+| ++.+|++++.||.|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 4433 55699999999999999999999999999999987 33 22 6777899996654 688999999999999
Q ss_pred EEEcCCCCcceeEEeCccCcee------------------------EEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 467 LWSIESDPKLVSRYKGHKRARF------------------------VIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 467 lwd~~~~~~~~~~~~~~~~~~~------------------------~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
+||++++ +.+..+.+|...+. +..++| + ++++|++|+.||.|++||+.+++..
T Consensus 287 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~-~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 287 IWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV-S-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE-E-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE-C-CceEEEecCCCCeEEEEECCCcccc
Confidence 9999988 78888876643221 111344 5 6689999999999999999999877
Q ss_pred eeecCC
Q 008717 523 AAASSL 528 (556)
Q Consensus 523 ~~~~~~ 528 (556)
....++
T Consensus 364 ~~~~~~ 369 (437)
T 3gre_A 364 KAVISP 369 (437)
T ss_dssp EEEECC
T ss_pred eEEecc
Confidence 766654
No 53
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=270.61 Aligned_cols=257 Identities=15% Similarity=0.193 Sum_probs=221.3
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+....+.+|.+.|.+++| |++++|++|+.||.|++||+.++ .....+..|...|.+++|+|++++|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4678889999999999999 99999999999999999999765 4567778899999999999999999999999999
Q ss_pred EEEECCCC---cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc-CCCEEE
Q 008717 342 RRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRII 417 (556)
Q Consensus 342 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~ 417 (556)
++|++... +.+..+..|...|.++.| +++.+++++.||.|++|| .......+ ..+...+.+++|+| +++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL-QAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE-ECCSSCEEEEEEEETTTTEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec-ccCCCceeEEEEccCCCCEEE
Confidence 99998654 567788889999999999 578999999999999999 33334444 44555999999998 899999
Q ss_pred EEeCCCeEEEEECCCCeeeeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 418 SICREAAILLLDREANFERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
+++.|+.|++||.......+.. +...+.+++|+|++. +++++.|+.|++||++++ +.+..+.+|...+.. +.| +
T Consensus 160 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~--~~~-~ 234 (313)
T 3odt_A 160 TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYC--IKL-L 234 (313)
T ss_dssp EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE--EEE-C
T ss_pred EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEE--EEE-e
Confidence 9999999999995544444554 889999999999998 999999999999999998 899999999988655 556 8
Q ss_pred CCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 497 FEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 497 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
|++ .|++++.||.|++||+.+++.......+.+.+
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i 269 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE
Confidence 898 58899999999999999998887776665433
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=270.05 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=229.1
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
.++..+.+..+.+|+.. ..+....+..|.+.|.+++|+|++++|++|+.||.|++|++...........+.+|
T Consensus 31 ~l~s~~~dg~v~vw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKD-------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp EEEEEETTSEEEEEEES-------SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC
T ss_pred EEEEEEcCCcEEEEECC-------CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc
Confidence 34555566666666542 24567788899999999999999999999999999999999865544566778899
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
...|.++.| +++++++++.||.|++|| .++....+..|...+.+++|+| +++.+++++.||.|++||. ......
T Consensus 104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 178 (313)
T 3odt_A 104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN-DKVIKT 178 (313)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET-TEEEEE
T ss_pred ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec-CceEEE
Confidence 999999999 578999999999999999 7788889999999999999998 9999999999999999993 344445
Q ss_pred eecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 396 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
+...+...+.+++|+|++. +++++.|+.|++||+++++ ..+..|...|++++|+|++ .|++++.||.|++||+.++
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 5554666999999999998 9999999999999999887 5566799999999999999 5889999999999999998
Q ss_pred CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
+.+..+..|...+.. +.| +|+++ +++++.||.|++|++.+++....
T Consensus 257 -~~~~~~~~~~~~i~~--~~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 257 -SLKQVITLPAISIWS--VDC-MSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -CEEEEEECSSSCEEE--EEE-CTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred -ceeEEEeccCceEEE--EEE-ccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 899999999887555 555 89998 55799999999999998876543
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=292.91 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=203.1
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
.++.|.++|++++|+|+|++||+|+.|+.|++||+.++ .......+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 34557789999999999999999999999999999854 33466778899999999999999999999999999999999
Q ss_pred CCCc---EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe----EEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 347 NSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 347 ~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++.. ...+...+...|.+++|+|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 9877 677788899999999999999999999999999999998764 445555366699999999999999999
Q ss_pred eCCCeEEEEECCC------------------Ce-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc----
Q 008717 420 CREAAILLLDREA------------------NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL---- 476 (556)
Q Consensus 420 ~~d~~I~i~d~~~------------------~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~---- 476 (556)
+.|+.|++||+.. +. .....|...|++++|+|++++|++++.|+.|++||+.++ +.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP-EQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST-TSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC-CCccee
Confidence 9999999999852 22 222278899999999999999999999999999999988 66
Q ss_pred eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+..+.+|...+.. +.| +|++++|++|+.|+.+ +|+..
T Consensus 244 ~~~~~~~~~~v~~--~~~-s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 244 LITVKLSQLPLRS--LLW-ANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CCCEECSSSCEEE--EEE-EETTEEEEEESSSSEE-EECCC
T ss_pred eEeecCCCCceEE--EEE-cCCCCEEEEEcCCcEE-EEEeC
Confidence 7889999988655 556 8999999999877666 66654
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-32 Score=282.09 Aligned_cols=270 Identities=16% Similarity=0.209 Sum_probs=222.6
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEE--ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQI--LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
..+.+..+.+|+..+ .+..+. +.+|.+.|++++|+|+|++||+|+.||+|+|||+.++ +.+..+.+|.
T Consensus 120 Avgld~tV~lWd~~t-------g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~h~ 189 (420)
T 4gga_A 120 AVALDNSVYLWSASS-------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHS 189 (420)
T ss_dssp EEEETTEEEEEETTT-------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred EEEeCCEEEEEECCC-------CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeCCC
Confidence 334455666665433 344444 4578889999999999999999999999999999876 5678889999
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe----
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---- 392 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~---- 392 (556)
..+.+++|+ +..|++|+.|+.+++||.... ..+..+..|...+..+.|+|++.++++++.|+.|++||.....
T Consensus 190 ~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~ 267 (420)
T 4gga_A 190 ARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267 (420)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred CceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence 999998885 679999999999999999764 5667888999999999999999999999999999999997532
Q ss_pred EEEeecccCCCeeEEEEccCCC-EEEE--EeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE--cCCeEE
Q 008717 393 LESWKGQKTLRISDMAITDDGK-RIIS--ICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--INQEIH 466 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~-~l~~--~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~--~dg~I~ 466 (556)
.......+...|.+++|+|++. .+++ |+.|++|++||+.++. .....+...+.++.|+|+++.+++++ .|+.|+
T Consensus 268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~ 347 (420)
T 4gga_A 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347 (420)
T ss_dssp CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEE
Confidence 2233344555899999999765 4544 3579999999999998 56666778899999999999998876 689999
Q ss_pred EEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 467 lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
|||+.++ +++.++.+|...|.. ++| +|||++|+||+.||+|+|||+.........
T Consensus 348 iwd~~~~-~~v~~l~gH~~~V~~--l~~-spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 348 IWKYPTM-AKVAELKGHTSRVLS--LTM-SPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEETTTC-CEEEEECCCSSCEEE--EEE-CTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEECCCC-cEEEEEcCCCCCEEE--EEE-cCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 9999998 899999999998665 566 999999999999999999999876554433
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=289.88 Aligned_cols=249 Identities=19% Similarity=0.249 Sum_probs=216.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEECC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~ 347 (556)
.|...|.+++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5899999999999999999999999999999986211 1366788899999999999998 8999999999999999998
Q ss_pred CCc------EEEE---EecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeeccc------CCCeeEEEEcc
Q 008717 348 SGE------CLHV---YEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQK------TLRISDMAITD 411 (556)
Q Consensus 348 ~~~------~~~~---~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~v~~s~ 411 (556)
+++ .... +..|...|.+++|+|+ +..+++++.||.|++||+++.........+ ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 3322 3568889999999998 789999999999999999876655544443 55899999999
Q ss_pred CC-CEEEEEeCCC---eEEEEECCCCe---eeee-ecCCceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 412 DG-KRIISICREA---AILLLDREANF---ERWI-EEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 412 ~g-~~l~~~~~d~---~I~i~d~~~~~---~~~~-~~~~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
++ .++++++.|+ .|++||+++.. ..+. .|...|++++|+| ++++|++++.|+.|++||++++ +.+..+.+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecC
Confidence 97 6899999998 99999999863 4455 7899999999999 9999999999999999999998 89999999
Q ss_pred ccCceeEEEEeecCCCC-cEEEEeeCCCcEEEEEcCCCcee
Q 008717 483 HKRARFVIRSCFGGFEQ-AFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~-~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
|...+.. +.| +|++ .+|++++.||.|++|++.+....
T Consensus 304 ~~~~v~~--~~~-s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 304 RGNWCFK--TKF-APEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SSSCCCC--EEE-CTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CCCceEE--EEE-CCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9988665 556 8998 89999999999999999877643
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=295.74 Aligned_cols=253 Identities=13% Similarity=0.190 Sum_probs=213.6
Q ss_pred ceeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCC------eeEEEEEecCCCCCeEEEEeCCC-CCEEEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDG------QVSLKHRLSGHRKPVFTVSWSPN-DHQLLT 334 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s 334 (556)
+.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||+.+.. .......+..|...|.+++|+|+ +.+|++
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence 478889999999999999998 8999999999999999998764 22222345679999999999999 789999
Q ss_pred EeCCCcEEEEECCCCcEEEEEecC------CCceEEEEEecCC-CeEEEEeCCC---cEEEEECCCC-eEEEeec-ccCC
Q 008717 335 CGQEEAIRRWDVNSGECLHVYEKT------GVGLISCGWFLDG-GGIFAGMTDK---SICLWDLDGR-ELESWKG-QKTL 402 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~-~~l~~~~~dg---~i~vwd~~~~-~~~~~~~-~~~~ 402 (556)
++.||.|++||+++++.+..+..+ ...+.+++|+|++ .++++++.|+ .|++||+++. ....... .+..
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~ 263 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence 999999999999999999988876 7889999999997 6899999998 9999999864 3333333 4556
Q ss_pred CeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCccee
Q 008717 403 RISDMAITD-DGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 403 ~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
.|.+++|+| ++.++++++.|+.|++||+++++ ..+..|...|++++|+|++ .+|++++.|+.|++||+.+. ....
T Consensus 264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~-~~~~ 342 (416)
T 2pm9_A 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL-TNTL 342 (416)
T ss_dssp CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC-CCSS
T ss_pred ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC-CCCc
Confidence 999999999 89999999999999999999887 5666789999999999999 89999999999999999876 3222
Q ss_pred EEeC-----------------------------------ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 479 RYKG-----------------------------------HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 479 ~~~~-----------------------------------~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.... |...+. .++| +|+|++|++|+.||.|+||++.++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSP--AAHW-AFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSC--CCEE-ETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCcc--ceEE-eeCCeEEEEeCCCCeEEEEEeccC
Confidence 1111 333322 2556 999999999999999999999875
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=286.54 Aligned_cols=240 Identities=18% Similarity=0.276 Sum_probs=212.8
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
|.+.|.+++|+|++++|++|+.||.|++||.. + .....+..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 78899999999999999999999999999933 3 4567788999999999999999999999999999999999999
Q ss_pred EEEEEecCCCc---------------eEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCE
Q 008717 351 CLHVYEKTGVG---------------LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 351 ~~~~~~~~~~~---------------v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
.+..+..+... +.+++|+|+ ..+++++.||.|++||+++.........+...|.+++|+|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence 99988877766 899999987 46889999999999999876655555556669999999999999
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEe
Q 008717 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (556)
+++++.|+.|++||+.++. ..+..|...|.+++|+|++ ++++++.|+.|++||++++ +.+..+..|...+.. +.
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~--~~ 337 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFA--GR 337 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEE--EE
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEE--EE
Confidence 9999999999999999877 5566789999999999999 9999999999999999998 889999999887555 55
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
| +|++++|++++.||.|++||+.++.
T Consensus 338 ~-s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 338 I-SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp E-CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred E-cCCCCEEEEEECCCeEEEEECCCCc
Confidence 5 9999999999999999999999887
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-34 Score=289.25 Aligned_cols=262 Identities=13% Similarity=0.128 Sum_probs=200.1
Q ss_pred cCCCCCCCCCCc---ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC
Q 008717 251 SDHQCGRNRIPS---QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327 (556)
Q Consensus 251 ~d~~~~~~~~~~---~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 327 (556)
.|.....|.... +.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++........+.+|...|.+++|+|
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 344444444433 56778899999999999999999999999999999999987642345677888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc---EEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-------------
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGE---CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG------------- 390 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~------------- 390 (556)
++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|++++.|+.|++||++.
T Consensus 111 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 190 (377)
T 3dwl_C 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG 190 (377)
T ss_dssp TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence 99999999999999999999887 3677777 899999999999999999999999999999852
Q ss_pred -----CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 391 -----RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 391 -----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
+...... .+...|.+++|+|++++|++++.|+.|++||+.++. ..+..|...|++++|+|++++|+++
T Consensus 191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 2233333 556689999999999999999999999999999875 3456788899999999999999998
Q ss_pred EcCCeEEEEEcCCCC-cce----------------------------------eEE----------------eCccCcee
Q 008717 460 LINQEIHLWSIESDP-KLV----------------------------------SRY----------------KGHKRARF 488 (556)
Q Consensus 460 ~~dg~I~lwd~~~~~-~~~----------------------------------~~~----------------~~~~~~~~ 488 (556)
+.++.+ +|+..... +.. ..+ ..|...+.
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 270 YNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp SSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred cCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 866655 77664220 000 111 12777766
Q ss_pred EEEEeecCCCCc---EEEEeeCCCcEEEEEc
Q 008717 489 VIRSCFGGFEQA---FIASGSEDSQNVPEIL 516 (556)
Q Consensus 489 ~i~~~~~s~~~~---~l~sgs~dg~v~iwd~ 516 (556)
.+.. +.+++. .|+||+.||.|++||+
T Consensus 349 ~~~~--~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRP--YAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEE--EEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEec--cCCCCCceEEEEeecCCCcEEEecC
Confidence 6443 233333 6999999999999985
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=288.51 Aligned_cols=251 Identities=17% Similarity=0.301 Sum_probs=207.4
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC--------eeEEEEEecCCC------------CCeEEEEeCCCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--------QVSLKHRLSGHR------------KPVFTVSWSPND 329 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~------------~~v~~l~~s~~~ 329 (556)
.|.+.|++++|+|+|++||+|+.||.|+|||+.++. .......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998653 223567888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCcEE---------------------------------------EE-EecCCCceEEEEE
Q 008717 330 --HQLLTCGQEEAIRRWDVNSGECL---------------------------------------HV-YEKTGVGLISCGW 367 (556)
Q Consensus 330 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~ 367 (556)
.+|++++.|++|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999764432 12 3578899999999
Q ss_pred ecCCCeEEEEeCCCcEEEEECC-CCeEEEe-------ecccCCCeeEEEEccCC-CEEEEEeCCCeEEEEECCCCe----
Q 008717 368 FLDGGGIFAGMTDKSICLWDLD-GRELESW-------KGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF---- 434 (556)
Q Consensus 368 ~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~-------~~~~~~~v~~v~~s~~g-~~l~~~~~d~~I~i~d~~~~~---- 434 (556)
+|++++|++| .|+.|++||++ +...... ...+...|.+++|+|++ +++++++.|+.|++||++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 79999999998 3333331 33455589999999998 999999999999999998865
Q ss_pred --eeeeecCC------------ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCcee------------
Q 008717 435 --ERWIEEEE------------VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF------------ 488 (556)
Q Consensus 435 --~~~~~~~~------------~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~------------ 488 (556)
..+..+.. .|++++|+|+|++|++++. +.|++||+++..+++..+.+|...+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 23334443 8999999999999999998 99999999973388999999864221
Q ss_pred -EEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 489 -VIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 489 -~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
...++| +|++++|++|+.||.|++||+.+++...
T Consensus 344 ~~~~~~~-s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 344 DKFECCW-NGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp CCCCEEE-CTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred cceEEEE-CCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 112556 9999999999999999999999988754
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7e-33 Score=281.46 Aligned_cols=240 Identities=11% Similarity=0.062 Sum_probs=198.2
Q ss_pred cccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 269 EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 269 ~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
.+|.+.|.+++|+| ++++|++++.|+.|++||+.+ ...........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~- 192 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL- 192 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence 47999999999999 789999999999999999984 333333333455688999999999999999999999999999
Q ss_pred CCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCC----CeEEEeecccCCCeeEEEEcc-CCCEEEEEeC
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDG----RELESWKGQKTLRISDMAITD-DGKRIISICR 421 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~ 421 (556)
+++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++ ........ +...|.+++|+| ++++|++++.
T Consensus 193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEEES
T ss_pred CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEEcC
Confidence 5788899999999999999999999 899999999999999975 44444443 455999999999 9999999999
Q ss_pred CCeEEEEECCCCe--eeeeec-------C----------CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 422 EAAILLLDREANF--ERWIEE-------E----------EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 422 d~~I~i~d~~~~~--~~~~~~-------~----------~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
|+.|++||+++.. ..+..| . ..+..++|+|++++ +++.|+.|++||+.++ +.+..+.+
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-~~~~~l~~ 348 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-GLVHQLRD 348 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC-CEEEEECB
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC-ceeeeecC
Confidence 9999999999876 333322 2 33444666666665 6678999999999998 88899987
Q ss_pred cc--CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 483 HK--RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 483 ~~--~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
|. ..+.. ++| +|++++|++|+ ||.|++||+.+
T Consensus 349 ~~~~~~~~~--~~~-s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 349 PNAAGIISL--NKF-SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTBCSCCCE--EEE-CTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCceEEE--EEE-ecCccEEEEec-CCcEEEEecCC
Confidence 53 43222 356 99999999997 99999999875
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=286.11 Aligned_cols=259 Identities=12% Similarity=0.170 Sum_probs=224.0
Q ss_pred ecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC----------
Q 008717 250 YSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP---------- 319 (556)
Q Consensus 250 ~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~---------- 319 (556)
..+.....|....+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++ .....+..+...
T Consensus 127 ~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 VENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG---TVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp ETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT---EEEEEECCC-------------
T ss_pred eCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC---cEEEEeeccccCccceeecccc
Confidence 3333334444557788899999999999999999999999999999999999866 455667777766
Q ss_pred -----eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 008717 320 -----VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 320 -----v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 394 (556)
+.+++|+|++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+++....
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 9999999875 6888999999999999999999999999999999999999999999999999999999876655
Q ss_pred EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
.....+...|.+++|+|++ .+++++.|+.|++||++++. ..+..|...|++++|+|++++|++++.||.|++||+.+
T Consensus 283 ~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 5555556699999999999 99999999999999999888 55567889999999999999999999999999999987
Q ss_pred CCc--------------------ceeEEeCccC--ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 473 DPK--------------------LVSRYKGHKR--ARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 473 ~~~--------------------~~~~~~~~~~--~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
. . .+..+.+|.. .+.. +.| +|++++|++++.||.|++|++.
T Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 362 L-NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD--LSW-NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp H-HC--------------CEECCEEEEECCTTCCCCEEE--EEE-CTTSSEEEEEESSSCCEEEECC
T ss_pred C-ccceeeeecccccccCcccchhhhhhcCcccCCceEE--EEc-cCCCceEEEEecCceEEEEeec
Confidence 7 6 7888999866 6444 566 9999999999999999999986
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=281.16 Aligned_cols=253 Identities=10% Similarity=0.097 Sum_probs=210.3
Q ss_pred cceeEEecccCCcEEEEEEccCCCEE-EEEeC---CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC---CCEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYL-ASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN---DHQLLT 334 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~l-as~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s 334 (556)
......+++|.+.|.+++|+|++..+ ++|+. |+.|++||+.++.. .. ....+|..+|.+++|+|+ +++|++
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL-KL-LREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE-EE-EEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc-cc-eeeecccCcEEEEEEcCCCCCCceEEE
Confidence 34455678899999999999999655 55665 99999999996542 22 223378999999999998 699999
Q ss_pred EeCCCcEEEEECCCCc-EEEEEecCCCceEEEEE------ecCCCeEEEEeCCCcEEEEECCCCe--EEEeeccc---CC
Q 008717 335 CGQEEAIRRWDVNSGE-CLHVYEKTGVGLISCGW------FLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQK---TL 402 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~---~~ 402 (556)
++.||.|++||+.+++ .+..+..|...|.++.| +|+++++++++.||.|++||+++.. +..+..+. ..
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999999988 88899999999999965 6789999999999999999998643 34433222 23
Q ss_pred CeeEEE----EccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcC---CCCEEEEEEcCCeEEEEEcCCCC
Q 008717 403 RISDMA----ITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSK---DNKYLLVNLINQEIHLWSIESDP 474 (556)
Q Consensus 403 ~v~~v~----~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp---~~~~l~~~~~dg~I~lwd~~~~~ 474 (556)
.+.+++ |+|+++++++++.|+.|++||++++. .....+...|.+++|+| ++.++++++.||.|++||++++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 244 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ- 244 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-
Confidence 788888 78899999999999999999999988 66677899999999999 9999999999999999999887
Q ss_pred cceeEEe-----CccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCCCc
Q 008717 475 KLVSRYK-----GHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 475 ~~~~~~~-----~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~~~ 520 (556)
+.+..+. +|...+.. +.| +|+++ +|++|+.||.|++||+.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQ--VRH-LPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEE--EEE-ETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CcccceeeeccCCCcCCEEE--EEE-CCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 6665554 88888655 555 89998 89999999999999998653
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=278.47 Aligned_cols=260 Identities=15% Similarity=0.204 Sum_probs=213.1
Q ss_pred cceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEE----------ecCCCCCeEEEEeCC-CC
Q 008717 262 SQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHR----------LSGHRKPVFTVSWSP-ND 329 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~----------~~~h~~~v~~l~~s~-~~ 329 (556)
.+....+.+|.+.|.+++|+| ++++||+|+.||.|++||+.++........ ..+|...|.+++|+| ++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345567888999999999999 999999999999999999986543222111 135999999999999 77
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC---CCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeE
Q 008717 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD 406 (556)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 406 (556)
.+|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||++++........+...|.+
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 899999999999999999999888876 6778999999984 459999999999999999876655555556669999
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEECCCCe---eee---------------eecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 407 MAITDDGK-RIISICREAAILLLDREANF---ERW---------------IEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 407 v~~s~~g~-~l~~~~~d~~I~i~d~~~~~---~~~---------------~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
++|+|++. .+++++.||.|++||+++.. ..+ ..|...|++++|+|++++|++++.||.|++
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 99999998 58899999999999998764 222 467889999999999999999999999999
Q ss_pred EEcCCCC----------------------------------------------cceeEEeCccCceeEEEEeecCCCCcE
Q 008717 468 WSIESDP----------------------------------------------KLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 468 wd~~~~~----------------------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
||+.++. +.+..+.+|...+.. +.| +|++++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~ 348 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC--CVF-QSNFQE 348 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE--EEE-ETTTTE
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE--EEE-cCCCCE
Confidence 9987641 345566778877555 555 899999
Q ss_pred EEEeeCCCcEEEEEcCCCceeeee
Q 008717 502 IASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
|++|+.||.|++|++.+++.....
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EEEEETTSCEEEEEECC-------
T ss_pred EEEECCCCeEEEEeCCCCCccCCC
Confidence 999999999999999998776543
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-32 Score=276.60 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=164.9
Q ss_pred CCCeEEEEeCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeE
Q 008717 317 RKPVFTVSWSPNDHQLLTCG--QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GREL 393 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~ 393 (556)
...+.+++|||||+++++++ .|++|+|||+.+++++..+. |...|.+++|+|||+++++++.++ +.+|+.. +..+
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~ 210 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCI 210 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcce
Confidence 34578899999999987554 68999999999999988886 677899999999999999998665 5555554 4443
Q ss_pred EE-eecccCCCeeEEEEccCCCEEEEEeCCC----eEEEEECCCCe------eeeeecCCceEEEEEcCCCCEEEEEEcC
Q 008717 394 ES-WKGQKTLRISDMAITDDGKRIISICREA----AILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 394 ~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~----~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~~~d 462 (556)
.. ....+...|.+++|+|+++.+++++.|+ .+++||..... ..+..|...|++++|+|||++||+|+.|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 32 3344555899999999999999999887 68899987765 2345688899999999999999999999
Q ss_pred CeEEEEEcCCCCcceeEE-eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 463 QEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 463 g~I~lwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+.|+|||++++ +++.++ .+|...++. ++| +|||++||+||.|++|+||++...
T Consensus 291 ~~V~iwd~~~~-~~~~~~~~gH~~~V~~--v~f-Spdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 291 NSIALVKLKDL-SMSKIFKQAHSFAITE--VTI-SPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEETTTT-EEEEEETTSSSSCEEE--EEE-CTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCC-cEEEEecCcccCCEEE--EEE-CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999998 888775 789998666 667 999999999999999999999654
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=280.42 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=209.0
Q ss_pred cccCCcEEEEEEccC---CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE------eCCCCCEEEEEeCCC
Q 008717 269 EAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS------WSPNDHQLLTCGQEE 339 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~---g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~------~s~~~~~l~s~~~dg 339 (556)
.+|.+.|.+++|+|+ |.+|++|+.||.|++||+.++. .....+.+|...|.++. |+|++++|++++.||
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence 379999999999998 7999999999999999998663 24567889999999995 578999999999999
Q ss_pred cEEEEECCCCc-EEEEEecCCC----ceEEEE----EecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEc
Q 008717 340 AIRRWDVNSGE-CLHVYEKTGV----GLISCG----WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (556)
Q Consensus 340 ~i~iwd~~~~~-~~~~~~~~~~----~v~~i~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s 410 (556)
.|++||+.+++ .+..+..+.. .+.+++ |+|+++++++++.||.|++||+++........+ ...|.+++|+
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~ 218 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-KNGVCSLEFD 218 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEES
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC-CCceEEEEcC
Confidence 99999999887 6777766544 788888 678999999999999999999998877555444 4489999999
Q ss_pred c---CCCEEEEEeCCCeEEEEECCCCe--eee-----eecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCC-----
Q 008717 411 D---DGKRIISICREAAILLLDREANF--ERW-----IEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDP----- 474 (556)
Q Consensus 411 ~---~g~~l~~~~~d~~I~i~d~~~~~--~~~-----~~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~----- 474 (556)
| ++.++++++.|+.|++||+++.. ..+ ..|...|++++|+|+++ +|++++.||.|++||+++..
T Consensus 219 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 219 RKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp CSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 9 99999999999999999998876 222 37899999999999998 89999999999999997642
Q ss_pred -------------cceeEEeCccCceeEEEEeecCCCCcEEE-EeeCCCcEEEEEcCCCce
Q 008717 475 -------------KLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDSQNVPEILLSESV 521 (556)
Q Consensus 475 -------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-sgs~dg~v~iwd~~~~~~ 521 (556)
+.+..+.+|...+.. +.| +|++++|+ +++.||.|++||+.+...
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISS--LDW-SPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEE--EEE-CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCccccccccceeeccccCCCCeeE--EEE-cCCCCeEEEEecCCCcEEEEECCCccc
Confidence 246778889888655 556 99999998 899999999999987543
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-32 Score=276.77 Aligned_cols=252 Identities=14% Similarity=0.220 Sum_probs=212.6
Q ss_pred EEecccCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCCeeEEEEEec--CCCCCeEEEEeCCC----CCEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLLTC 335 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~----g~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 335 (556)
....+|.++|++++|+|+ ...+++++.++.|++||+.++........+. .|...|.+++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345589999999999984 4456666677799999999765544444333 37789999999998 6799999
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEee---cccCCCeeEEEEcc
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITD 411 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~s~ 411 (556)
+.||.|++||+.+++.+..+..|...|.+++|+| +++++++++.||.|++||++++...... ..+...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 8999999999999999999987666555 45666999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe--eeee----------------------------ecCCceEEEEEcCCCCEEEEEEc
Q 008717 412 DGKRIISICREAAILLLDREANF--ERWI----------------------------EEEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~--~~~~----------------------------~~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
+++++++++.|+.|++||+++++ ..+. .|...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 99999999999999999998765 1111 288899999999 779999999
Q ss_pred CCeEEEEEcCCCCc-------------ceeEEeCccCceeEEEEeecCCC--CcEEEEeeCCCcEEEEEcCCCcee
Q 008717 462 NQEIHLWSIESDPK-------------LVSRYKGHKRARFVIRSCFGGFE--QAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 462 dg~I~lwd~~~~~~-------------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
|+.|++||+.+... .+..+.+|...+.. +.| +|+ +++|++|+.||.|++||+.+++..
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY--MRF-SMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC--CCC-EECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE--EEE-cCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 99999999987621 26777888877655 444 778 999999999999999999987653
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-32 Score=282.31 Aligned_cols=276 Identities=17% Similarity=0.242 Sum_probs=224.4
Q ss_pred cCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCee----EEEEEecC
Q 008717 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV----SLKHRLSG 315 (556)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~ 315 (556)
.+.++.+.+|+...... ....+..+.+|.+.|.+++|+| ++++|++|+.||+|+|||+.++... .....+.+
T Consensus 53 ~~~~g~i~v~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp CSSSCCEEEEETTCCEE---CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EcCCCEEEEEECccCCC---CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 45567777776433211 1234556889999999999999 9999999999999999999865321 34567889
Q ss_pred CCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEE--ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe
Q 008717 316 HRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (556)
Q Consensus 316 h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~ 392 (556)
|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||++++.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 99999999999998 69999999999999999999999999 7899999999999999999999999999999998766
Q ss_pred EEEee-cccCC-CeeEEEEccCCCEEEEE---eCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEE-EcC
Q 008717 393 LESWK-GQKTL-RISDMAITDDGKRIISI---CREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVN-LIN 462 (556)
Q Consensus 393 ~~~~~-~~~~~-~v~~v~~s~~g~~l~~~---~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~-~~d 462 (556)
..... ..+.+ .+.+++|+|++.+++++ +.|+.|++||+++.. .....+...+.+++|+|++++|+++ +.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 55443 34433 48999999999999998 799999999999865 2333577889999999999999755 469
Q ss_pred CeEEEEEcCCCCcceeEEeCcc--CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 463 QEIHLWSIESDPKLVSRYKGHK--RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 463 g~I~lwd~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
+.|++||+.++...+..+..|. ..+.. ++| +|++.++++ .++.+++|++.++.....
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~--~~~-sp~~~~~~s--~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKESQRG--MGY-MPKRGLEVN--KCEIARFYKLHERKCEPI 348 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSCCSE--EEE-CCGGGSCGG--GTEEEEEEEEETTEEEEE
T ss_pred CeEEEEEecCCCcceEeecccccCCcccc--eEE-eccccccee--cceeEEEEEcCCCcEEEE
Confidence 9999999998732366665554 55444 566 899998764 567999999998776544
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.1e-31 Score=277.79 Aligned_cols=266 Identities=21% Similarity=0.322 Sum_probs=223.4
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
++..+.+..+.+|+.. ..+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++ .....+.+|.
T Consensus 135 l~sgs~dg~i~vwd~~-------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~ 203 (464)
T 3v7d_B 135 VITGADDKMIRVYDSI-------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHN 203 (464)
T ss_dssp EEEEETTSCEEEEETT-------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred EEEEcCCCcEEEEECC-------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---cEEEEECCCC
Confidence 3445555666666533 356788899999999999999988 9999999999999999876 5667888999
Q ss_pred CCeEEEEeC--CCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecCCCceEEEEEecCCC
Q 008717 318 KPVFTVSWS--PNDHQLLTCGQEEAIRRWDVNSGE-----------------------CLHVYEKTGVGLISCGWFLDGG 372 (556)
Q Consensus 318 ~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~v~~i~~~~~~~ 372 (556)
..|.+++|+ +++.++++++.||+|++||+.++. .+..+.+|...+.++ +++++
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 281 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN 281 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence 999999998 578999999999999999998765 255677788888776 67899
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEc
Q 008717 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS 450 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~s 450 (556)
++++|+.||.|++||+++.........+...|.+++|+|+++++++++.|+.|++||+++++ ..+..|...|.+++|+
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 99999999999999999877666666666799999999999999999999999999999988 5666899999999997
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
+.+|++++.||.|++||+.+. .....+. +...+.. .++ ++++++|++|+ ||.|++||+.+++++..
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~-~~~~~~~-~~~~~~~--~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDY-SRKFSYH-HTNLSAI--TTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTC-CEEEEEE-CTTCCCE--EEE-EECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred --CCEEEEEeCCCcEEEEECCCC-ceeeeec-CCCCccE--EEE-EeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 589999999999999999987 5444443 3333333 344 88999999998 89999999999998765
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-33 Score=293.63 Aligned_cols=273 Identities=11% Similarity=0.060 Sum_probs=207.8
Q ss_pred cCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccC------CCEEEEEeCCCcEEEEEeecCCee-------
Q 008717 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHD------GKYLASSSKDQSAIIWEVKEDGQV------- 307 (556)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~------g~~las~s~dg~i~iwd~~~~~~~------- 307 (556)
.+.+..+.+|+..... .......++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.++...
T Consensus 179 ~s~D~tI~iWd~~~~~---~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 179 EKHSSCIQIFKMNTST---LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ---CEEEEEEEEETTT---CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred CCCCceEEEEEccCCC---CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 4455566677533211 111123457788999999999997 579999999999999999754311
Q ss_pred -EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCceEEE--EEecCC-CeEEEEeCCCc
Q 008717 308 -SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CLHVYEKTGVGLISC--GWFLDG-GGIFAGMTDKS 382 (556)
Q Consensus 308 -~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~dg~ 382 (556)
.+...+.+|...|.+++|+++ ..|++|+.||+|++||++++. +...+..|...|.++ +|+|++ .+|++|+.|++
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred cCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 123467889999999999986 489999999999999998774 456688999999999 567887 89999999999
Q ss_pred EEEEECCCCeE-EEeecccC-CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEE
Q 008717 383 ICLWDLDGREL-ESWKGQKT-LRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLV 458 (556)
Q Consensus 383 i~vwd~~~~~~-~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~ 458 (556)
|++||+++... ..+..+.. ..|.+++|+|++..+++++.|++|++||++++. ..+.+|...|++++|+|+|++|++
T Consensus 335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 99999986432 22222221 258899999999999999999999999999877 667789999999999999999999
Q ss_pred EEcCCeEEEEEcCCC-------------------------------------------CcceeEEeCccCceeEEEEeec
Q 008717 459 NLINQEIHLWSIESD-------------------------------------------PKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 459 ~~~dg~I~lwd~~~~-------------------------------------------~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
|+.|++|++||+... ...+.++.+|...++. ++|
T Consensus 415 gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~--Vaf- 491 (524)
T 2j04_B 415 GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC--TKW- 491 (524)
T ss_dssp EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC--EEE-
T ss_pred EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE--EEC-
Confidence 999999999985321 0112233455555554 556
Q ss_pred CCCC---cEEEEeeCCCcEEEEEcCCCc
Q 008717 496 GFEQ---AFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 496 s~~~---~~l~sgs~dg~v~iwd~~~~~ 520 (556)
+|++ .++|+|+.||.|+||++..+.
T Consensus 492 sp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 492 NETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CCCCCccHHHHhhccCceEEEEEccccc
Confidence 8885 499999999999999988654
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.5e-32 Score=278.72 Aligned_cols=250 Identities=18% Similarity=0.232 Sum_probs=207.7
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+....+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC---cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 4556677899999999999999999999999999999999876 3456778999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEec---CCCceEEEE---------------------EecCCCeEEEEeCCCcEEEEECCCCe-EEEe
Q 008717 342 RRWDVNSGECLHVYEK---TGVGLISCG---------------------WFLDGGGIFAGMTDKSICLWDLDGRE-LESW 396 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~---~~~~v~~i~---------------------~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~ 396 (556)
++||+++++.+..+.. +...+.+++ |+|+++++++|+.||.|++||+++.. +...
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 285 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL 285 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence 9999999999988875 344455555 46789999999999999999998654 4455
Q ss_pred ecccCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 397 KGQKTLRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~---~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
...+...|.+++|+|++. ++++++.||.|++||++++. ..+.. +...|+++.+ +++++|++++.|+.|++||+.
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 555666899999999999 99999999999999999864 44444 6777888855 578899999999999999997
Q ss_pred CCC--------cceeEEeCccCceeEEEEeecCCCCc---EEEEeeCCCcEEEEEcCC
Q 008717 472 SDP--------KLVSRYKGHKRARFVIRSCFGGFEQA---FIASGSEDSQNVPEILLS 518 (556)
Q Consensus 472 ~~~--------~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~sgs~dg~v~iwd~~~ 518 (556)
... .....+.+|...+.. ++| +|+++ .|++++.+|.+.+|++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 365 DPESERPAIEFETPTFLVSNDDAVSQ--FCY-VSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTCCSCEECTTSCEEECCSSCCCCE--EEE-ECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCCCccceeccCccEEccCCcceEE--EEE-ccCCCCcceEEEEcCCceEEEEeccC
Confidence 631 122345566666555 566 88998 777888899999999875
No 73
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=304.82 Aligned_cols=252 Identities=14% Similarity=0.256 Sum_probs=212.1
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeCCCcEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIR 342 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~ 342 (556)
+.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++ .......+.+|.++|.+++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3568899999999999999999999999999999999843 34677888999999999999988 99999999999999
Q ss_pred EEECCCCc--EEEEEecCCCceEEEEEecC--CCeEEEEeCCCcEEEEECCCC--eEEEeecccCCCeeEEEEcc-----
Q 008717 343 RWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITD----- 411 (556)
Q Consensus 343 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~s~----- 411 (556)
+||+.+++ .+..+..|...|.+++|+|+ ++.+++|+.||.|++||+++. ........+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 67788889999999999999 999999999999999999765 22223334455899999999
Q ss_pred --------CCCEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCC---CCEEEEEEcCCeEEEEEcCCCC
Q 008717 412 --------DGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESDP 474 (556)
Q Consensus 412 --------~g~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~---~~~l~~~~~dg~I~lwd~~~~~ 474 (556)
++..+++++.||.|++||++++. ..+..|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 58999999999999999998763 345578999999999999 9999999999999999998761
Q ss_pred c----ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 475 K----LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 475 ~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
. .+....+|...+.. ++| +|+|++|++|+.||.|++|++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~v~~--l~~-spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWR--ASW-SLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCC--EEE-CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CcceeEEeccCCCCCceEE--EEE-cCCCCEEEEEcCCCEEEEEecCCCC
Confidence 1 33334456666554 566 9999999999999999999998543
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=273.39 Aligned_cols=253 Identities=15% Similarity=0.263 Sum_probs=210.1
Q ss_pred CCCcceeEEecccCCcEEEEEEccC---CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE
Q 008717 259 RIPSQTLQILEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (556)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~~~~sp~---g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 335 (556)
..|.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+.+. .....+.+|...|.+++|+|++++|+++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 4567788899999999999999999 69999999999999999986332 3446778899999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEEecCCCceEEEEE--ecCCCeEEEEeCCCcEEEEECCCCeEEEeecc--------------
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--FLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-------------- 399 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------- 399 (556)
+.||.|++||+.+++.+. +..|...|.+++| +|++.++++++.||.|++||++++........
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 999999999999988776 5568999999999 88999999999999999999975432211111
Q ss_pred ---------------------------cCCCeeEEEEccCCCE----EEEEeCCCeEEEEECCCCe-----eeeeecCC-
Q 008717 400 ---------------------------KTLRISDMAITDDGKR----IISICREAAILLLDREANF-----ERWIEEEE- 442 (556)
Q Consensus 400 ---------------------------~~~~v~~v~~s~~g~~----l~~~~~d~~I~i~d~~~~~-----~~~~~~~~- 442 (556)
....+.++++.++... +++++.|+.|++||+.... ..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 1124556666655544 9999999999999998863 34444443
Q ss_pred -----------ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcE
Q 008717 443 -----------VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQN 511 (556)
Q Consensus 443 -----------~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v 511 (556)
.|++++|+|++++|++++.||.|++||+.++ +++..+.+|...+.. ++| +|+|++|++++.|+..
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~--~~~-s~~g~~l~~~s~d~~~ 339 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISA--CCF-NHNGNIFAYASSYDWS 339 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEE--EEE-CTTSSCEEEEECCCST
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCCceE--EEE-CCCCCeEEEEeccccc
Confidence 7999999999999999999999999999998 899999999988655 566 9999999999999866
Q ss_pred EEEEcC
Q 008717 512 VPEILL 517 (556)
Q Consensus 512 ~iwd~~ 517 (556)
+.|++.
T Consensus 340 ~~~~~~ 345 (368)
T 3mmy_A 340 KGHEFY 345 (368)
T ss_dssp TCGGGC
T ss_pred cccccc
Confidence 655544
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.1e-31 Score=276.48 Aligned_cols=248 Identities=17% Similarity=0.283 Sum_probs=213.7
Q ss_pred ceeEEecccCCcE-EEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 263 QTLQILEAHSDEV-WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 263 ~~~~~l~~h~~~V-~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.....+.+|.+.| .++.+ ++++|++|+.||+|++||+.++ +....+.+|.+.|.+++|+|++ .+++|+.||+|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3456788999885 55555 6789999999999999999876 5678889999999999999988 99999999999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCCCeE-----------------------EEe
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGREL-----------------------ESW 396 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~ 396 (556)
++||+.+++++..+..|...|.+++|++ ++.++++|+.||.|++||+++... ...
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 9999999999999999999999999994 778999999999999999976431 223
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008717 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~ 474 (556)
...+...|.++ +++++++++++.|+.|++||+.+++ ..+.+|...|++++|+|+++++++|+.||.|++||++++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~- 342 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG- 342 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Confidence 33444466665 6789999999999999999999988 556678999999999999999999999999999999998
Q ss_pred cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
+++..+.+|...+.. +.+ ++.+|++|+.||.|++||+.++.....
T Consensus 343 ~~~~~~~~h~~~v~~--~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 343 ELMYTLQGHTALVGL--LRL---SDKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp EEEEEECCCSSCEEE--EEE---CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEeCCCCcEEE--EEE---cCCEEEEEeCCCcEEEEECCCCceeee
Confidence 899999999998655 444 368999999999999999998765433
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=289.38 Aligned_cols=252 Identities=9% Similarity=0.048 Sum_probs=200.9
Q ss_pred cceeEEecccCCcEEEEEEccCC---------CEEEE-------------------EeCCCcEEEEEeecCCe-eEEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDG---------KYLAS-------------------SSKDQSAIIWEVKEDGQ-VSLKHR 312 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g---------~~las-------------------~s~dg~i~iwd~~~~~~-~~~~~~ 312 (556)
.+....+. +.+.|++++|+|++ ++||+ ++.|++|+||++.++.. ......
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~ 202 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT 202 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence 34444444 67888888888876 56666 45788999999986542 122345
Q ss_pred ecCCCCCeEEEEeCCC------CCEEEEEeCCCcEEEEECCCCcE-----------EEEEecCCCceEEEEEecCCCeEE
Q 008717 313 LSGHRKPVFTVSWSPN------DHQLLTCGQEEAIRRWDVNSGEC-----------LHVYEKTGVGLISCGWFLDGGGIF 375 (556)
Q Consensus 313 ~~~h~~~v~~l~~s~~------~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~ 375 (556)
+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|...|++++|+++ ..|+
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~la 281 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVV 281 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEE
Confidence 6778899999999996 57999999999999999987642 2467788999999999986 4899
Q ss_pred EEeCCCcEEEEECCCC-eEEEeecccCCCeeEE--EEccCC-CEEEEEeCCCeEEEEECCCCe--eeeeecC--CceEEE
Q 008717 376 AGMTDKSICLWDLDGR-ELESWKGQKTLRISDM--AITDDG-KRIISICREAAILLLDREANF--ERWIEEE--EVITSF 447 (556)
Q Consensus 376 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v--~~s~~g-~~l~~~~~d~~I~i~d~~~~~--~~~~~~~--~~i~~v 447 (556)
+|+.||+|++||+++. ........|...|.++ +|+|+| .+|++++.|++|++||+++.+ ..+.+|. ..|.++
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV 361 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence 9999999999999854 3333334455699999 578888 899999999999999999876 4445554 358899
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 448 ~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
+|+|+++.+++++.|++|++||++++ .++.++.+|...++. +.| +|+|++|++|+.||+|++||+..+
T Consensus 362 ~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~s--va~-Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 362 VYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITA--IGV-SRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEE--EEC-CSSCCBCEEEETTTEEECCBSCSS
T ss_pred EeCCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEE--EEe-CCCCCeEEEEECCCEEEEEechHh
Confidence 99999999999999999999999998 778889999998766 566 999999999999999999998654
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.5e-31 Score=258.25 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=219.3
Q ss_pred cCCCCceeeecCCCCCCCCCCcceeEEe--cccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 241 NTSDSDFSLYSDHQCGRNRIPSQTLQIL--EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l--~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
.+.+..+.+|+..+ .++++.+ .+|...|.+++|+|+|++||+|+.||+|++||+.++ +.+..+.+|..
T Consensus 41 vg~D~tV~iWd~~t-------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~~~~~~h~~ 110 (318)
T 4ggc_A 41 VALDNSVYLWSASS-------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSA 110 (318)
T ss_dssp EEETTEEEEEETTT-------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSS
T ss_pred EEeCCEEEEEECCC-------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeEEEecCccc
Confidence 33455666665332 4455554 578889999999999999999999999999999876 56678889999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCe----E
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----L 393 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~----~ 393 (556)
.+.++.+ ++..+++++.++.+++|+..++ ..+..+..|...+..+.+.++++++++++.||.|++||+++++ .
T Consensus 111 ~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 111 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred eEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc
Confidence 8887665 5679999999999999999775 4567788999999999999999999999999999999997532 2
Q ss_pred EEeecccCCCeeEEEEccCCCEE---EEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE--cCCeEEE
Q 008717 394 ESWKGQKTLRISDMAITDDGKRI---ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--INQEIHL 467 (556)
Q Consensus 394 ~~~~~~~~~~v~~v~~s~~g~~l---~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~--~dg~I~l 467 (556)
......+.+.|.+++++|++..+ ++++.++.|++||..... .....+...+..+.|+|++..+++++ .|+.|++
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 268 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEE
Confidence 22333444589999999987643 356678999999999888 66677888899999999999988765 7899999
Q ss_pred EEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
||++++ +++.++.+|...+.. ++| +|+|++|+||+.||+|+|||+....
T Consensus 269 wd~~~~-~~~~~l~gH~~~V~~--l~~-spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 269 WKYPTM-AKVAELKGHTSRVLS--LTM-SPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTC-CEEEEECCCSSCEEE--EEE-CTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EECCCC-cEEEEEcCCCCCEEE--EEE-cCCCCEEEEEecCCeEEEEECCCCC
Confidence 999998 899999999998665 566 9999999999999999999987543
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-32 Score=283.51 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=196.1
Q ss_pred eeEEecccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 008717 264 TLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (556)
....+.+|.+.|++++|+| ++++|++|+.||+|++||+.+. ..........+...+.+++|+|++.+|++|+.||.|+
T Consensus 156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 4456779999999999998 7899999999999999999753 2233333334555688999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEE---EeecccCCCeeEEEEccCCCEEEE
Q 008717 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELE---SWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
+||++ ++.+..+..|...|.+++|+|++. ++++|+.|+.|++||+++.... .....|...|++++|+|+|++|++
T Consensus 235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp EEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred eeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE
Confidence 99986 456777889999999999999876 6778999999999999753321 122345568999999999999999
Q ss_pred EeCCCeEEEEECCCCe--eeeeecCC------ceEEEEEcCCCCEEEEEEc------------CCeEEEEEcCCCCccee
Q 008717 419 ICREAAILLLDREANF--ERWIEEEE------VITSFSLSKDNKYLLVNLI------------NQEIHLWSIESDPKLVS 478 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--~~~~~~~~------~i~~v~~sp~~~~l~~~~~------------dg~I~lwd~~~~~~~~~ 478 (556)
++.|+.|++||+.++. .....|.. .+....|+|++.+++++.. ++.|++||..++ +.+.
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-~~~~ 392 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG-KMMC 392 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-CEEE
T ss_pred EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-cEEE
Confidence 9999999999999876 33333321 2345678888877777642 357999999998 7777
Q ss_pred EEe-CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 479 RYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 479 ~~~-~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.+. +|...+.. ++.|+|+|++|++|+ |+.|+||++.+++.
T Consensus 393 ~l~~~~~~~v~s--~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 393 QLYDPESSGISS--LNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EECCSSCCCCCC--EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEeCCCCCcEEE--EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 664 66666544 333399999999876 88999999998765
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-31 Score=275.88 Aligned_cols=253 Identities=17% Similarity=0.277 Sum_probs=212.6
Q ss_pred eEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecC-------CeeEEEEEecCCCCCeEEEEeCCCCC-EEEEE
Q 008717 265 LQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKED-------GQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTC 335 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~ 335 (556)
.....+|.+.|++++|+|+ +.+||+++.||.|++|++.+. +.......+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3456689999999999997 789999999999999999861 22356677889999999999999988 99999
Q ss_pred eCCCcEEEEECCCCcE-------EEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCC----eEEEeecccCCC
Q 008717 336 GQEEAIRRWDVNSGEC-------LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR----ELESWKGQKTLR 403 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~ 403 (556)
+.||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.||.|++||+++. .+..+. .+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCC
Confidence 9999999999987421 456678899999999999 6788999999999999999864 333333 45558
Q ss_pred eeEEEEccCCC-EEEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCCC----
Q 008717 404 ISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDP---- 474 (556)
Q Consensus 404 v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~---- 474 (556)
|++++|+|++. .+++++.||.|++||+++.. ..+..|...|++++|+|+++ +|++++.|+.|++||+....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 99999999987 68899999999999999843 56667999999999999985 69999999999999998621
Q ss_pred ---------cceeEEeCccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCCCce
Q 008717 475 ---------KLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 475 ---------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.++..+.+|...+.. +.| +|++. +|++++.||.|+||++..+..
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~--~~~-~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISD--FSW-NPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEE--EEE-CSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred ccccccCCcceEEEcCCCCCCceE--EEE-CCCCCCEEEEEECCCCEEEeEcccccc
Confidence 566777888887555 555 89998 999999999999999976543
No 80
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.7e-31 Score=308.11 Aligned_cols=248 Identities=19% Similarity=0.315 Sum_probs=223.2
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+.+|.+.|++++|+|+|++||+|+.||+|++||+.++ .....+.+|.+.|.+++|+|++++|++++.||.|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 44578899999999999999999999999999999999876 456778899999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
||+.+++.+..+..|...|.+++|+| ++..+++|+.|+.|++||++++........|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999999999999999999999 5568999999999999999987766666666679999999999999999999
Q ss_pred CCeEEEEECCCCe--ee-------------------------------------------------------eeecCCce
Q 008717 422 EAAILLLDREANF--ER-------------------------------------------------------WIEEEEVI 444 (556)
Q Consensus 422 d~~I~i~d~~~~~--~~-------------------------------------------------------~~~~~~~i 444 (556)
||.|++||+.++. .. ..+|...|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 9999999987654 11 01456789
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.+++|+|+++++++++.|+.|++||+.++ ..+..+.+|...+.. +.| +|+|++|++++.||.|++|++.+
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~--v~~-spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHG--VMF-SPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEE--EEE-CTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEE--EEE-CCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999999999998 889999999998655 556 99999999999999999999764
No 81
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.4e-31 Score=283.04 Aligned_cols=264 Identities=18% Similarity=0.240 Sum_probs=228.8
Q ss_pred ceeEEecccCCc-EEEEEEcc--CCCEEEEEeCCCcEEEEEeecCC-----eeEEEEEecCCCCCeEEEEeCCCCCEEEE
Q 008717 263 QTLQILEAHSDE-VWFLQFSH--DGKYLASSSKDQSAIIWEVKEDG-----QVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (556)
Q Consensus 263 ~~~~~l~~h~~~-V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 334 (556)
+....+.+|.+. |.+++|+| ++++||+|+.||.|++||+.++. .......+..|..+|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 678899999999 99999999 99999999999999999997431 23566788889999999999999999999
Q ss_pred EeCC----CcEEEEECCCCcEEEEEecCCCceEEEEEecCCC-eEEEEeCCCcEEEEECCCCeEEEeecccCC---CeeE
Q 008717 335 CGQE----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTL---RISD 406 (556)
Q Consensus 335 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~ 406 (556)
++.+ +.|++|| +++.+..+..|...|.+++|+|+++ .+++++.|+.|++||+++.........+.. .|.+
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 211 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence 9987 6888888 6788899999999999999999998 799999999999999998777666666766 7999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEECCCCe-eeee-----ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE
Q 008717 407 MAITDD-GKRIISICREAAILLLDREANF-ERWI-----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (556)
Q Consensus 407 v~~s~~-g~~l~~~~~d~~I~i~d~~~~~-~~~~-----~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~ 479 (556)
++|+|+ ++++++++.|+.|++||+.+++ .... .|...|.+++|+ ++++|++++.|+.|++||++++ +.+..
T Consensus 212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~ 289 (615)
T 1pgu_A 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQK 289 (615)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEE
Confidence 999999 9999999999999999999887 3333 789999999999 9999999999999999999988 88888
Q ss_pred EeCccC--ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 480 YKGHKR--ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 480 ~~~~~~--~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
+..+.. ......+.+ + ++.++++++.||.|++||+.+++.......+.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 290 WTLDKQQLGNQQVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EECCTTCGGGCEEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EcCCCCcccCceeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 887731 112233444 3 89999999999999999999988877776666443
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-30 Score=270.75 Aligned_cols=266 Identities=16% Similarity=0.316 Sum_probs=222.3
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+.+|.+.|.. +++++|++|++|+.||+|++||+.++ +....+.+|.+.|.+++|+ ++.+++|+.||+|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34678899987543 35567999999999999999999876 4667889999999999997 679999999999999
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
||+.+++.+..+..|...|.++.|+ ++.+++|+.||.|++||++++........+...|.++++ +++.+++++.|+
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred EECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 9999999999999999999999995 678999999999999999876665555556669999999 788999999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcE
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (556)
.|++||++++. ..+..|...|.++.| ++.++++++.|+.|++||++++ +.+..+.+|...+.. + .+++++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~--~---~~~~~~ 331 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSG--M---ELKDNI 331 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEE--E---EEETTE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEE--E---EEeCCE
Confidence 99999999887 556678899999999 7899999999999999999998 889999999887544 3 236789
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeecCCCcccccceeeEeEeehhhh
Q 008717 502 IASGSEDSQNVPEILLSESVAAAASSLDNFVSSYFCLHLFSFYLYS 547 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 547 (556)
+++|+.||.|++||+.+++.......+......+.|+.....++++
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 377 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVIT 377 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEE
Confidence 9999999999999999998877776643333334444333333333
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=275.55 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=198.4
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee---cCCeeE-----EEEEe--cC--CCCCeEEEE--eCCCCCEEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK---EDGQVS-----LKHRL--SG--HRKPVFTVS--WSPNDHQLLTC 335 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~---~~~~~~-----~~~~~--~~--h~~~v~~l~--~s~~~~~l~s~ 335 (556)
+|.+.|.+++|+|++++|++|+.||+|++||+. ++.... .+..+ .. +...+.++. +++++.+|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999999999999999999999999995 332211 11111 12 566777877 66899999999
Q ss_pred eCCCcEEEEECCCCcEEEEEec--CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe-ecccCCCeeEEEEc--
Q 008717 336 GQEEAIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISDMAIT-- 410 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~s-- 410 (556)
+.||.|++||+++++++..+.. |...|++++|+|+++++++|+.||.|++||++++..... ...+...|.+++|+
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 9999999999999999999988 788999999999999999999999999999987665443 32444589999665
Q ss_pred --cCCCEEEEEeCCCeEEEEECCCCe--eeeee--------------------------cCCceEEEEEcCCCCEEEEEE
Q 008717 411 --DDGKRIISICREAAILLLDREANF--ERWIE--------------------------EEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 411 --~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~--------------------------~~~~i~~v~~sp~~~~l~~~~ 460 (556)
|++.++++++.|+.|++||++++. ..+.. |...|++++|+ ++++|++++
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 467799999999999999999877 22221 55668899999 789999999
Q ss_pred cCCeEEEEEcCCCCcceeEEeC-------------------------------------ccCceeEEEEeecCCCCcEEE
Q 008717 461 INQEIHLWSIESDPKLVSRYKG-------------------------------------HKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 461 ~dg~I~lwd~~~~~~~~~~~~~-------------------------------------~~~~~~~i~~~~~s~~~~~l~ 503 (556)
.|+.|++||+.++ +....+.+ |...+..+.+.. .+++.+|+
T Consensus 348 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~-~~~~~~l~ 425 (437)
T 3gre_A 348 ATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE-VDETPLLV 425 (437)
T ss_dssp GGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE-SSSSEEEE
T ss_pred CCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec-cCCceEEE
Confidence 9999999999988 77777766 667766655444 33488999
Q ss_pred EeeCCCcEEEEE
Q 008717 504 SGSEDSQNVPEI 515 (556)
Q Consensus 504 sgs~dg~v~iwd 515 (556)
+|+.||.|+||+
T Consensus 426 s~~~dG~I~iw~ 437 (437)
T 3gre_A 426 ACDNSGLIGIFQ 437 (437)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCceEEEeC
Confidence 999999999995
No 84
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-30 Score=258.48 Aligned_cols=217 Identities=16% Similarity=0.242 Sum_probs=192.3
Q ss_pred eeEEEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCC-----CcEEEEEecCCCceEEEEEecCCCeEEEEeC
Q 008717 306 QVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS-----GECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 306 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 379 (556)
.+.+..++.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+ +.++..+.+|...|.+++|+|+++++++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345667899999999999999965 8999999999999999864 3457788999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCC------
Q 008717 380 DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKD------ 452 (556)
Q Consensus 380 dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~------ 452 (556)
|++|++||+++++.......|...|.+++|+|++.++++++.|++|++||++... ..+.+|...|.++.|+|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 9999999999877666555666699999999999999999999999999998776 677789999999999995
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 453 NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 453 ~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
+.++++++.|+.|++||+++. +....+.+|...+.. ++| +|+|++|++|+.||.|++||+.+++......
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~--~~~-sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINT--LTA-SPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEE--EEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEE--EEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 458999999999999999988 888899999998665 556 9999999999999999999999887765544
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.7e-30 Score=264.60 Aligned_cols=261 Identities=20% Similarity=0.384 Sum_probs=223.9
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
+..+.+..+.+|+.. ..+.+..+.+|.+.|++++|+ +++|++|+.||+|++||+.++ .....+.+|..
T Consensus 133 ~sg~~dg~i~vwd~~-------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~ 200 (445)
T 2ovr_B 133 VSGSDDNTLKVWSAV-------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYGHTS 200 (445)
T ss_dssp EEEETTSCEEEEETT-------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECCCSS
T ss_pred EEEECCCcEEEEECC-------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECCCCC
Confidence 344555556666433 256788899999999999997 669999999999999999876 56678889999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
.|.++.|+ ++.+++|+.||.|++||+.+++.+..+..|...|.++.| +++.+++|+.||.|++||+++........
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 99999995 678999999999999999999999999999999999998 78999999999999999998777666566
Q ss_pred ccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008717 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~ 476 (556)
.+...|.+++| ++.++++++.|+.|++||+++++ ..+..|...+.++.+ +++++++++.||.|++||++++ +.
T Consensus 277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~ 351 (445)
T 2ovr_B 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QC 351 (445)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CE
T ss_pred CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cE
Confidence 66668999999 78899999999999999999887 556678888888877 4679999999999999999988 88
Q ss_pred eeEEeC---ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 477 VSRYKG---HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 477 ~~~~~~---~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
+..+.+ |...+.. +.| ++++|++|+.||.|++||+.+++.....
T Consensus 352 ~~~~~~~~~~~~~v~~--~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTC--LQF---NKNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEECSTTSCSSCEEE--EEE---CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEccCCCCCCCEEE--EEE---CCCEEEEEeCCCeEEEEECCCCceeeee
Confidence 888887 6666544 444 5789999999999999999999887665
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.7e-31 Score=270.63 Aligned_cols=259 Identities=19% Similarity=0.335 Sum_probs=214.1
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
+.++.+..+.+|+.. ..+....+.+|.+.|.+++| ++++|++|+.||+|++||+.++ .....+.+|..
T Consensus 147 ~~g~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~ 214 (435)
T 1p22_A 147 VSGLRDNTIKIWDKN-------TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCE 214 (435)
T ss_dssp EEEESSSCEEEEESS-------SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCS
T ss_pred EEEeCCCeEEEEeCC-------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCC
Confidence 344445555555432 25677889999999999999 7899999999999999999876 45678889999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE---EEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 395 (556)
.|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++|+.||.|++||+++.....
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 99999997 459999999999999999887654 677789999999999 78899999999999999998776655
Q ss_pred eecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 396 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
....+...|.++++ ++.++++++.||.|++||++++. ..+..|...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 291 ~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 55566668999998 46799999999999999999887 566678999999999 7899999999999999999765
Q ss_pred Cc---------ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 474 PK---------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 474 ~~---------~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
. .+..+.+|...+.. +.| ++.+|++|+.||.|++||+.++....
T Consensus 367 -~~~~~~~~~~~~~~~~~h~~~v~~--l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 367 -LDPRAPAGTLCLRTLVEHSGRVFR--LQF---DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp -TSTTSCTTTTEEEEECCCSSCCCC--EEE---CSSCEEECCSSSEEEEEC--------
T ss_pred -CCccccccchheeeccCCCCCeEE--EEe---CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 3 68889999998766 444 78899999999999999998876543
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-30 Score=268.94 Aligned_cols=248 Identities=20% Similarity=0.312 Sum_probs=213.6
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
....+|...|.+++| ++++|++|+.||.|++||+.++ +....+.+|.+.|.+++| ++++|++|+.||+|++||
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE
Confidence 334567788999887 7999999999999999999876 456778899999999999 788999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE---EeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE---SWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
+.+++.+..+..|...|.+++|+ +..+++|+.||.|++||+++.... .....+...|.+++| +++++++++.|
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 99999999999999999999996 469999999999999999764322 444556668999999 78899999999
Q ss_pred CeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 423 ~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
+.|++||++++. ..+..|...|.++.+ +++++++|+.||.|++||++++ +.+..+.+|...+.. +.+ ++.
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~--~~~---~~~ 347 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRC--IRF---DNK 347 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEE--EEC---CSS
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEE--EEe---cCC
Confidence 999999999987 566678999999999 4789999999999999999998 899999999988655 344 789
Q ss_pred EEEEeeCCCcEEEEEcCCCc---------eeeeecCCCccc
Q 008717 501 FIASGSEDSQNVPEILLSES---------VAAAASSLDNFV 532 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~~~~---------~~~~~~~~~~~v 532 (556)
+|++|+.||.|++||+.++. .......+.+.+
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v 388 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe
Confidence 99999999999999998765 555555665544
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-31 Score=268.07 Aligned_cols=245 Identities=13% Similarity=0.155 Sum_probs=201.7
Q ss_pred ecccCCcE--EEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 268 LEAHSDEV--WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 268 l~~h~~~V--~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
..+|.+.+ .+++|+ +..+++++.|+.|++||+.++.. ...+. .|...|.+++|+|++++|++|+.||.|++|
T Consensus 87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSV---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCE---EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcE---eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 34677654 445555 45688888999999999987643 23333 388999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
|+.+++.+..+..|...|.+++| +++.+++++.||.|++||++ ..........+...|.+++|+|+++++++++.|+
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999999 46799999999999999998 4444444445556999999999999999999999
Q ss_pred eEEEEECCCCe--eeeeecCCceEEEEEcCCCC-EEEEEE--cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC
Q 008717 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (556)
Q Consensus 424 ~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~-~l~~~~--~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (556)
.|++||+++.. ..+..|...|.+++|+|++. ++++++ .|+.|++||+.++ +.+..+..+ ..+. .++| +|+
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~-~~v~--~~~~-s~~ 314 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAG-SQVT--SLIW-SPH 314 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECS-SCEE--EEEE-CSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCC-CcEE--EEEE-CCC
Confidence 99999999877 45667899999999999774 555554 6999999999998 788888644 4433 3556 999
Q ss_pred CcEEEE--eeCCCcEEEEEcCCCceeee
Q 008717 499 QAFIAS--GSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 499 ~~~l~s--gs~dg~v~iwd~~~~~~~~~ 524 (556)
++++++ |+.||.|++|++.++.....
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeE
Confidence 999999 55899999999998765443
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.6e-31 Score=263.92 Aligned_cols=260 Identities=10% Similarity=0.097 Sum_probs=214.1
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEe-ecCCeeEEEEEecC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEV-KEDGQVSLKHRLSG 315 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~-~~~~~~~~~~~~~~ 315 (556)
++..+.+..+.+|+..... +......+.+|...|.+++|+|+++ +|++|+.||.|++||+ .++. ...+.+
T Consensus 26 l~~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~ 97 (342)
T 1yfq_A 26 LLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS----FQALTN 97 (342)
T ss_dssp EEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS----EEECBS
T ss_pred EEEEcCCCeEEEEEeCCCC----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc----eEeccc
Confidence 3444555566666533211 1123566679999999999999999 9999999999999999 7542 266788
Q ss_pred --CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC---------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEE
Q 008717 316 --HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS---------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384 (556)
Q Consensus 316 --h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 384 (556)
|...|.+++|+| +++|++++.|+.|++||+++ ++++..+. +...+.+++|+|++ +++++.|+.|+
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~ 173 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQ 173 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEE
Confidence 999999999999 99999999999999999987 66666665 78899999999887 99999999999
Q ss_pred EEECCC-Ce--EEEeecccCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCC------e--eeeeecCC---------c
Q 008717 385 LWDLDG-RE--LESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREAN------F--ERWIEEEE---------V 443 (556)
Q Consensus 385 vwd~~~-~~--~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~------~--~~~~~~~~---------~ 443 (556)
+||+++ .. .......+...|.+++|+| +++++++++.||.|++||+... . ..+..|.. .
T Consensus 174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T 1yfq_A 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccccee
Confidence 999987 32 3444445556899999999 9999999999999999999876 3 45555544 9
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc-cCceeEEEEeecCCCCcEEEEeeCCCc-EEEEE
Q 008717 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFIASGSEDSQ-NVPEI 515 (556)
Q Consensus 444 i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~sgs~dg~-v~iwd 515 (556)
|++++|+|++++|++++.||.|++||+.++ +.+..+.+| ...+..+. |++++|++++.||. .+.|.
T Consensus 254 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~-----~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIA-----CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEE-----ECSSEEEEEEECTHHHHCSS
T ss_pred EEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhhhhcccCCCceEec-----CCCCeEEEEecCCccccccc
Confidence 999999999999999999999999999998 889999998 88765533 79999999999998 44444
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.98 E-value=1.5e-30 Score=290.54 Aligned_cols=275 Identities=11% Similarity=0.131 Sum_probs=229.4
Q ss_pred eecCCCCceeeecCCCCCCCCC-CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRI-PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
|++.....+....+.....|.. ..+.+..+.+|.+.|.+++|+|+|++|++|+.||.|++||+.++ .....+.+|.
T Consensus 21 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~ 97 (814)
T 3mkq_A 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHP 97 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEecCC
Confidence 4443333333333333333332 35678889999999999999999999999999999999999876 4567788999
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-cEEEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCe-EE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE-LE 394 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~ 394 (556)
+.|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.||.|++||+++.. ..
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 99999999999999999999999999999887 67788889999999999999 89999999999999999997543 34
Q ss_pred EeecccCCCeeEEEEcc--CCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 395 SWKGQKTLRISDMAITD--DGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~--~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
....++...+.+++|+| ++.++++++.|+.|++||+.++. ..+..|...|++++|+|+++++++++.||.|++||+
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44455546899999999 99999999999999999999887 556678899999999999999999999999999999
Q ss_pred CCCCcceeEEeCccCceeEEEEeecCCCCc--EEEEeeCCCcEEEEEcCCCce
Q 008717 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQA--FIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.++ +.+..+..|...+.. ++| +|++. +++++ .|+.+.+|++..+..
T Consensus 258 ~~~-~~~~~~~~~~~~v~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 258 STY-KVEKTLNVGLERSWC--IAT-HPTGRKNYIASG-FDNGFTVLSLGNDEP 305 (814)
T ss_dssp TTC-SEEEEECCSSSSEEE--EEE-CTTCGGGEEEEE-ETTEEEEEECSCCSC
T ss_pred CCC-cEEEEeecCCCcEEE--EEE-ccCCCceEEEEE-eCCCEEEEEcCCCCc
Confidence 998 889999999887655 555 88887 45544 567789999876544
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=6.2e-30 Score=298.64 Aligned_cols=277 Identities=19% Similarity=0.253 Sum_probs=228.5
Q ss_pred ecCCCCCCCCCC-cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-
Q 008717 250 YSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP- 327 (556)
Q Consensus 250 ~~d~~~~~~~~~-~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~- 327 (556)
..|.....|+.. .+.+..+.+|.+.|.+++|+|+|++||+|+.||+|+|||+.++ .....+.+|...|.+++|+|
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecC
Confidence 344444444443 5678889999999999999999999999999999999999876 56678889999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEE-----------
Q 008717 328 -NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----------- 395 (556)
Q Consensus 328 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------- 395 (556)
++..+++|+.||.|++||+.+++++..+.+|...|.+++|+|+++++++++.||.|++||+++.....
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 55689999999999999999999999999999999999999999999999999999999986532211
Q ss_pred --------------------------------------------eecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q 008717 396 --------------------------------------------WKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (556)
Q Consensus 396 --------------------------------------------~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~ 431 (556)
....+...|.+++|+|++.++++++.|+.|++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 111445589999999999999999999999999999
Q ss_pred CCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc----------------------------ceeEEe
Q 008717 432 ANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK----------------------------LVSRYK 481 (556)
Q Consensus 432 ~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~----------------------------~~~~~~ 481 (556)
++. ..+.+|...|++++|+|+|++|++++.|+.|++||+.+... .+....
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 988 66678999999999999999999999999999999753100 001111
Q ss_pred C--------ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 482 G--------HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 482 ~--------~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
+ +... ...+++ +|+++++++|+.||.|++|++.++.......++.+.+
T Consensus 951 ~~~~~~~~~~~~~--i~~~~~-sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQ--VSCCCL-SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp ESSCCEEEECCSC--EEEEEE-CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred cCcceEEEcccCc--EEEEEE-cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 1 1122 223455 9999999999999999999999988877666665544
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.4e-30 Score=266.50 Aligned_cols=245 Identities=16% Similarity=0.263 Sum_probs=202.1
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCee-EEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCCC-
Q 008717 274 EVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG- 349 (556)
Q Consensus 274 ~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~- 349 (556)
....++++|+...++ +++.||.|+||++...+.. .....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688888776444 5789999999999654322 23345778999999999999 9999999999999999999987
Q ss_pred ------cEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEee--cccCCCeeEEEEccCCCEEEEEe
Q 008717 350 ------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 350 ------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
+.+..+.+|...|.+++|+|++ +.+++++.||.|++||++++...... ..+...|.+++|+|++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6678899999999999999998 69999999999999999887665555 55666999999999999999999
Q ss_pred CCCeEEEEECCCCe--eee-eecCCc-eEEEEEcCCCCEEEEE---EcCCeEEEEEcCCCCcceeEEe-CccCceeEEEE
Q 008717 421 REAAILLLDREANF--ERW-IEEEEV-ITSFSLSKDNKYLLVN---LINQEIHLWSIESDPKLVSRYK-GHKRARFVIRS 492 (556)
Q Consensus 421 ~d~~I~i~d~~~~~--~~~-~~~~~~-i~~v~~sp~~~~l~~~---~~dg~I~lwd~~~~~~~~~~~~-~~~~~~~~i~~ 492 (556)
.|+.|++||++++. ..+ ..|... +.++.|+|++++|++| +.|+.|++||+++....+.... .|...+.. +
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~--~ 273 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL--P 273 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE--E
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE--E
Confidence 99999999999988 333 456655 8999999999999999 6899999999988734344443 45555433 5
Q ss_pred eecCCCCcEEE-EeeCCCcEEEEEcCCCce
Q 008717 493 CFGGFEQAFIA-SGSEDSQNVPEILLSESV 521 (556)
Q Consensus 493 ~~~s~~~~~l~-sgs~dg~v~iwd~~~~~~ 521 (556)
.| +|++++|+ +|+.||.|++|++.+++.
T Consensus 274 ~~-s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 274 FF-DPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EE-ETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EE-cCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 55 99999986 555799999999998873
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=270.17 Aligned_cols=272 Identities=11% Similarity=0.207 Sum_probs=203.8
Q ss_pred eecCCCCceeeecCCCCCC----CCCCcceeEEecccC------------CcEEEEEEccCC--CEEEEEeCCCcEEEEE
Q 008717 239 FHNTSDSDFSLYSDHQCGR----NRIPSQTLQILEAHS------------DEVWFLQFSHDG--KYLASSSKDQSAIIWE 300 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~l~~h~------------~~V~~~~~sp~g--~~las~s~dg~i~iwd 300 (556)
+..+.+..+.+|+-..... .....+....+.+|. +.|.+++|+|++ .+|++++.|++|++||
T Consensus 44 a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~ 123 (447)
T 3dw8_B 44 ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK 123 (447)
T ss_dssp EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEE
T ss_pred EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEe
Confidence 3444555666665443221 111223577889998 889999999998 7999999999999999
Q ss_pred eecCCee------------------------------------EEEEE-ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 301 VKEDGQV------------------------------------SLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 301 ~~~~~~~------------------------------------~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
+.++... ..... ..+|...|.+++|+|++++|++| .|+.|++
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~i 202 (447)
T 3dw8_B 124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINL 202 (447)
T ss_dssp EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEE
T ss_pred cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEE
Confidence 9753210 01112 36899999999999999999998 7999999
Q ss_pred EECCC-CcEEEE-------EecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeE-----EEeecccC--------
Q 008717 344 WDVNS-GECLHV-------YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGREL-----ESWKGQKT-------- 401 (556)
Q Consensus 344 wd~~~-~~~~~~-------~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~-------- 401 (556)
||+.+ ++.+.. +..|...|.+++|+|++ ++|++|+.||.|++||+++... ..+..+..
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (447)
T 3dw8_B 203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFS 282 (447)
T ss_dssp EETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHH
T ss_pred EECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccccc
Confidence 99984 444442 45788999999999998 9999999999999999987653 34433322
Q ss_pred ---CCeeEEEEccCCCEEEEEeCCCeEEEEECCC-Ce--eeeeecCCc---------------eEEEEEcCCCCEEEEEE
Q 008717 402 ---LRISDMAITDDGKRIISICREAAILLLDREA-NF--ERWIEEEEV---------------ITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 402 ---~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~-~~--~~~~~~~~~---------------i~~v~~sp~~~~l~~~~ 460 (556)
..|.+++|+|+|++|++++. +.|++||+++ +. ..+..|... +..++|+|++++|++|+
T Consensus 283 ~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 283 EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 27999999999999999999 9999999987 54 444444321 33499999999999999
Q ss_pred cCCeEEEEEcCCCCcceeEEeCccC-------------------------------ceeEEEEeecCCCCcEEEEeeCCC
Q 008717 461 INQEIHLWSIESDPKLVSRYKGHKR-------------------------------ARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 461 ~dg~I~lwd~~~~~~~~~~~~~~~~-------------------------------~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
.||.|++||+.++ +.+ .+.+|.. ...+..+.| +|++++||+++.++
T Consensus 362 ~dg~v~iwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 362 YNNFFRMFDRNTK-RDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW-HPKENIIAVATTNN 438 (447)
T ss_dssp STTEEEEEETTTC-CEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEE-CSSSSEEEEECSSC
T ss_pred cCCEEEEEEcCCC-cce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEE-CCCCCEEEEEecce
Confidence 9999999999987 443 3333321 011233566 99999999998876
Q ss_pred cEEEEEc
Q 008717 510 QNVPEIL 516 (556)
Q Consensus 510 ~v~iwd~ 516 (556)
+++|.-
T Consensus 439 -~~~~~~ 444 (447)
T 3dw8_B 439 -LYIFQD 444 (447)
T ss_dssp -EEEEEC
T ss_pred -eeeecc
Confidence 888864
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=5.3e-30 Score=276.37 Aligned_cols=251 Identities=12% Similarity=0.173 Sum_probs=217.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCC-eEEEEeCC--CCCEEEEEeCCCcEEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKP-VFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~-v~~l~~s~--~~~~l~s~~~dg~i~iwd 345 (556)
.|.+.|.+++|+|+|++|++++ ++.|++||+.++.. ......+.+|... |.+++|+| ++++|++++.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 5889999999999999999998 88999999986511 1345778899999 99999999 999999999999999999
Q ss_pred CCCC--------cEEEEEecCCCceEEEEEecCCCeEEEEeCC----CcEEEEECCCCeEEEeecccCCCeeEEEEccCC
Q 008717 346 VNSG--------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTD----KSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 346 ~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
+.++ +....+..|...|.+++|+|+++++++++.+ +.|++|| .+..+..+ ..+...|.+++|+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~-~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEV-SGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEEC-CSCSSCEEEEEECSSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceee-ecCCccEEEEEECCCC
Confidence 9755 6777888899999999999999999999988 6899998 33444444 4555699999999999
Q ss_pred C-EEEEEeCCCeEEEEECCCCe--eeeeecCC---ceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCcceeEE-e---C
Q 008717 414 K-RIISICREAAILLLDREANF--ERWIEEEE---VITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRY-K---G 482 (556)
Q Consensus 414 ~-~l~~~~~d~~I~i~d~~~~~--~~~~~~~~---~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~-~---~ 482 (556)
+ .+++++.|+.|++||..+.+ ..+..|.. .|++++|+|+ +++|++++.|+.|++||+.++ +.+..+ . +
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 251 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEP 251 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBC
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccc
Confidence 8 89999999999999999887 55566888 8999999999 999999999999999999998 888888 6 8
Q ss_pred ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 483 HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
|...+.. +.| + ++.+|++++.||.|++||+.+++.......+
T Consensus 252 ~~~~v~~--~~~-~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 252 VQGGIFA--LSW-L-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp CCSCEEE--EEE-S-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred cCCceEE--EEE-c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 8888655 566 6 9999999999999999999998877666544
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-30 Score=266.20 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=200.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec-------------------------------------
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS------------------------------------- 314 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~------------------------------------- 314 (556)
..++.+++|+|+|++|+++ .++.|++||+.++.....+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999976666 57899999998876322333333
Q ss_pred -----------------CCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEECC--CCcEEEEEe--cCCCceEEEEEecCCC
Q 008717 315 -----------------GHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVN--SGECLHVYE--KTGVGLISCGWFLDGG 372 (556)
Q Consensus 315 -----------------~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 372 (556)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 344579999999999996 889999999999999 888888886 5678899999999999
Q ss_pred eEEEEeCCCcEEEEECCCCeEEE----eecccCCCeeEEEEccC---CCEEEEEeCCCeEEEEECCCCe--ee-eeecCC
Q 008717 373 GIFAGMTDKSICLWDLDGRELES----WKGQKTLRISDMAITDD---GKRIISICREAAILLLDREANF--ER-WIEEEE 442 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~v~~s~~---g~~l~~~~~d~~I~i~d~~~~~--~~-~~~~~~ 442 (556)
+|++|+.+|.|++|++.+..... ....+...|.+++|+|+ +++|++++.|+.|++||+.++. .. ..+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999997644321 33344558999999999 9999999999999999999877 33 447899
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc-----------------------CceeEEEEeecCCCC
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-----------------------RARFVIRSCFGGFEQ 499 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-----------------------~~~~~i~~~~~s~~~ 499 (556)
.|++++|+ ++++|++++.|+.|++||+.++ +++..+..+. ....+..+.+ +|++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~ 319 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK-SKNL 319 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE-CSSS
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE-eCCC
Confidence 99999999 9999999999999999999998 7787776432 1122333555 8999
Q ss_pred cEEEEee-CCCcEEEEEc--CCC
Q 008717 500 AFIASGS-EDSQNVPEIL--LSE 519 (556)
Q Consensus 500 ~~l~sgs-~dg~v~iwd~--~~~ 519 (556)
++|++++ .|+.|++|++ .++
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSST
T ss_pred CEEEEEECCCCeEEEEEeccCCC
Confidence 9999999 8999999999 554
No 96
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.9e-30 Score=254.15 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=185.9
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
+..+.+..+.+|+... ...+++.++.+|.++|++++|+| +|++||+|+.|++|+|||+.++. ......+.+|
T Consensus 25 as~s~D~~v~iw~~~~-----~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~h 98 (297)
T 2pm7_B 25 ATCSSDKTIKIFEVEG-----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR-WSQIAVHAVH 98 (297)
T ss_dssp EEEETTSCEEEEEBCS-----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC-BCCCEEECCC
T ss_pred EEEeCCCEEEEEecCC-----CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc-eEEEEEeecC
Confidence 3444555566654321 12356788999999999999986 48999999999999999998642 2344567889
Q ss_pred CCCeEEEEeCCC--CCEEEEEeCCCcEEEEECCCCc--EEEEEecCCCceEEEEEecC-------------CCeEEEEeC
Q 008717 317 RKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLD-------------GGGIFAGMT 379 (556)
Q Consensus 317 ~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~-------------~~~l~~~~~ 379 (556)
...|.+++|+|+ +.+|++++.|++|++||++++. ....+..|...|.+++|+|+ +++|++|+.
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~ 178 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence 999999999997 8999999999999999998763 24567789999999999997 579999999
Q ss_pred CCcEEEEECCCCe----EEEeecccCCCeeEEEEccCC---CEEEEEeCCCeEEEEECCCCe----eee---eecCCceE
Q 008717 380 DKSICLWDLDGRE----LESWKGQKTLRISDMAITDDG---KRIISICREAAILLLDREANF----ERW---IEEEEVIT 445 (556)
Q Consensus 380 dg~i~vwd~~~~~----~~~~~~~~~~~v~~v~~s~~g---~~l~~~~~d~~I~i~d~~~~~----~~~---~~~~~~i~ 445 (556)
|+.|++||+++.. .......|...|.+++|+|++ .+|++++.|++|++||+.+.. ... ..+...|.
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 9999999997533 333344566699999999985 799999999999999998742 122 35678899
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 446 SFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 446 ~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
+++|+|+|++|++++.|+.|++|+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999999864
No 97
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=1.3e-30 Score=264.79 Aligned_cols=232 Identities=18% Similarity=0.276 Sum_probs=190.9
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCeeEEEEEe----
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRL---- 313 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~---- 313 (556)
+..+.+..+.+|+........-.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.. ...+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~ 200 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR---ISIFGSEF 200 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE---EEEECCCS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE---EEEeeccc
Confidence 344555566666543322212223455678999999999999996 45799999999999999987643 3333
Q ss_pred -cCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECC-CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 008717 314 -SGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (556)
Q Consensus 314 -~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~ 390 (556)
.+|...|.+++|++ ++++|++|+.|++|++||++ +++.+..+.+|...|.+++|+|++++|++|+.||+|++||+++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 67999999999987 88999999999999999997 5577888999999999999999999999999999999999987
Q ss_pred CeEEEeeccc-------CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eee----eecCCceEEEEEcCCCCEEE
Q 008717 391 RELESWKGQK-------TLRISDMAITDDGKRIISICREAAILLLDREANF--ERW----IEEEEVITSFSLSKDNKYLL 457 (556)
Q Consensus 391 ~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~----~~~~~~i~~v~~sp~~~~l~ 457 (556)
+........+ ...|.+++|+|+|+++++|+.||.|++||..+++ ..+ .+|...|++++|+|+|++|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 6654433222 1248999999999999999999999999998876 222 46889999999999999999
Q ss_pred EEEcCCeEEEEEcCCC
Q 008717 458 VNLINQEIHLWSIESD 473 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~ 473 (556)
+|+.|+.|++|++...
T Consensus 361 sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EeeCCCCEEEEecCCC
Confidence 9999999999999865
No 98
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-30 Score=287.19 Aligned_cols=272 Identities=11% Similarity=0.115 Sum_probs=208.5
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEE-------
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK------- 310 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~------- 310 (556)
++..+.+..+.+|+-.. .+++..+. |.+.|++++|+|++++|++|+.||+|++||+.++.. ...
T Consensus 72 L~S~s~D~~v~lWd~~~-------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~-~~~~i~~~~~ 142 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYS-------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL-SSFKLDNLQK 142 (902)
T ss_dssp EEEEETTCEEEEEETTT-------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE-EEEEECCHHH
T ss_pred EEEEECcCeEEEEECCC-------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc-ccceeccccc
Confidence 33444455555554322 35566665 778999999999999999999999999999986522 111
Q ss_pred --EEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEecC------------------CCceEEEEEec
Q 008717 311 --HRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKT------------------GVGLISCGWFL 369 (556)
Q Consensus 311 --~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~~~ 369 (556)
..+.+|.++|.+++|+|+ +..+++|+.||.| +||+++++++..+..| ...|++++|+|
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999996 5789999999999 9999999998888765 46799999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEEEeec------c------------cC------------------------------
Q 008717 370 DGGGIFAGMTDKSICLWDLDGRELESWKG------Q------------KT------------------------------ 401 (556)
Q Consensus 370 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~------------~~------------------------------ 401 (556)
+|.+|++|+.||.|++||+++++...... + +.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 99999999999999999986422111000 0 00
Q ss_pred --------------------------------------------------------------------------------
Q 008717 402 -------------------------------------------------------------------------------- 401 (556)
Q Consensus 402 -------------------------------------------------------------------------------- 401 (556)
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence
Q ss_pred --------------------CCeeEE----------------------------------EEccCCCEEEEEeCCCeEEE
Q 008717 402 --------------------LRISDM----------------------------------AITDDGKRIISICREAAILL 427 (556)
Q Consensus 402 --------------------~~v~~v----------------------------------~~s~~g~~l~~~~~d~~I~i 427 (556)
..|+++ +|+|+++++++|+.|++|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 001111 22456778888899999999
Q ss_pred EECCCCee----ee---------eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC--------------------
Q 008717 428 LDREANFE----RW---------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-------------------- 474 (556)
Q Consensus 428 ~d~~~~~~----~~---------~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~-------------------- 474 (556)
||+.++.. .+ .+|...|++++|+|||++||+|+.||+|+|||+.++.
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence 99877641 11 1677899999999999999999999999999997651
Q ss_pred ------------------------cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 475 ------------------------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 475 ------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
+++..+.+|...++. ++| +||| +||+|+.|++|++||+.++.++.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~s--vaf-SpdG-~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA--INN-SNIG-FVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEE--EEE-CBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEE--EEe-cCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence 236778889998766 556 9999 99999999999999998877653
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.8e-29 Score=258.48 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=214.0
Q ss_pred CCCcceeEEecccC----CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE
Q 008717 259 RIPSQTLQILEAHS----DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (556)
Q Consensus 259 ~~~~~~~~~l~~h~----~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 334 (556)
.+|..+.+++.+.. -.++.++||++ +.||+|. |++|+|||..++.. .....+.+|...|++++|+|+|++|++
T Consensus 88 ~i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~-~~~~~~~~~~~~V~sv~fspdg~~las 164 (420)
T 4gga_A 88 YIPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAV 164 (420)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ccCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCE-EEEEEecCCCCcEEEEEECCCCCEEEE
Confidence 34455555555422 24778999975 4777775 99999999997643 334456678889999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCC
Q 008717 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
|+.||+|++||+.+++++..+.+|...+.++.|+ +..+++|+.|+.+++||... .........+...+..+.++|++
T Consensus 165 gs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 9999999999999999999999999999888774 67999999999999999975 23333334455589999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCC-CEEEEE--EcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 414 KRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDN-KYLLVN--LINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~-~~l~~~--~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
.++++++.|+.|++||..++. .....|...|.+++|+|++ .+++++ +.|+.|++||+.++ +++..+..|.
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~ 321 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHS 321 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSS
T ss_pred CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeecccc
Confidence 999999999999999998765 4456788899999999976 455554 47999999999998 8888888776
Q ss_pred CceeEEEEeecCCCCcEEEEee--CCCcEEEEEcCCCceeeeecCCCccc
Q 008717 485 RARFVIRSCFGGFEQAFIASGS--EDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
.. ....| +++++.+++++ .||.|+|||+.+++.+....+|.+.|
T Consensus 322 ~v---~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V 367 (420)
T 4gga_A 322 QV---CSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367 (420)
T ss_dssp CE---EEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred ce---eeeee-cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 53 44566 88888887765 79999999999999988888887654
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.3e-30 Score=257.80 Aligned_cols=240 Identities=19% Similarity=0.238 Sum_probs=188.8
Q ss_pred hccccceeecCCCCceeeecCCCCCCCCCCc---ceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCCe
Q 008717 232 VQRDSCLFHNTSDSDFSLYSDHQCGRNRIPS---QTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQ 306 (556)
Q Consensus 232 ~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~~ 306 (556)
.....+.|++.....++...|.....|+... ..+..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~- 92 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT- 92 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC-
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc-
Confidence 3333444444433333334444444443332 35678999999999999986 48999999999999999998642
Q ss_pred eEEEEEecCCCCCeEEEEeCCC--CCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCceEEEEEecC-----------
Q 008717 307 VSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGEC---LHVYEKTGVGLISCGWFLD----------- 370 (556)
Q Consensus 307 ~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~----------- 370 (556)
......+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++.. ...+..|...+.+++|+|+
T Consensus 93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 172 (316)
T 3bg1_A 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 172 (316)
T ss_dssp CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CC
T ss_pred ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccc
Confidence 2355678899999999999998 78999999999999999987632 3445678888999999997
Q ss_pred ------CCeEEEEeCCCcEEEEECCCC---eEEEeecccCCCeeEEEEccCC----CEEEEEeCCCeEEEEECCCC---e
Q 008717 371 ------GGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREAN---F 434 (556)
Q Consensus 371 ------~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~s~~g----~~l~~~~~d~~I~i~d~~~~---~ 434 (556)
+.+|++|+.|+.|++||+++. ........|...|.+++|+|++ .+|++++.|++|++||+.+. .
T Consensus 173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~ 252 (316)
T 3bg1_A 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT 252 (316)
T ss_dssp SCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC
T ss_pred ccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc
Confidence 478999999999999999743 2333344555689999999986 78999999999999999862 1
Q ss_pred ---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 435 ---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 435 ---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
..+..|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 253 ~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 34456789999999999999999999999999999764
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.4e-28 Score=245.90 Aligned_cols=272 Identities=11% Similarity=0.104 Sum_probs=219.7
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCCeeEEEEEecCC
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (556)
++....+..+.+|+... .+.+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.++ +....+..+
T Consensus 5 ~vs~~~d~~v~v~d~~~-------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~ 73 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS-------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAG 73 (391)
T ss_dssp EEEETTTTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECS
T ss_pred EEEcCCCCEEEEEECCC-------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECC
Confidence 34556677788886443 45666777665 48999999999987 67779999999999865 445555544
Q ss_pred CCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEE
Q 008717 317 RKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~ 394 (556)
. .+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++..
T Consensus 74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 4 899999999999886555 5799999999999988888754 468999999999987 67778999999999887765
Q ss_pred EeecccCCCeeEEEEccCCCEE-EEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE---cCCeEEEEE
Q 008717 395 SWKGQKTLRISDMAITDDGKRI-ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL---INQEIHLWS 469 (556)
Q Consensus 395 ~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~---~dg~I~lwd 469 (556)
.....+. .+.+++|+|+++.+ ++++.++.|++||+++++ .....+...+.+++|+|+++++++++ .++.|++||
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 5554443 78999999999987 567788999999999988 55666778899999999999999988 689999999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEE-EEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI-ASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
+.++ +.+..+..|... ..+.| +|++++| ++++.|+.|++||+.++++......+
T Consensus 231 ~~~~-~~~~~~~~~~~~---~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 231 TGTN-KITARIPVGPDP---AGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp TTTT-EEEEEEECCSSE---EEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCC-eEEEEEecCCCc---cEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 9988 888888877652 33566 9999877 67788999999999998887655433
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-30 Score=255.72 Aligned_cols=232 Identities=9% Similarity=0.029 Sum_probs=185.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC---------C
Q 008717 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---------S 348 (556)
Q Consensus 278 ~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~ 348 (556)
..+.+++.+|++|+.||+|++||+.++... ..+. ...|.++.|+|+ +++++.|++|++|+.. +
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI---TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE---EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE---EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCC
Confidence 345568889999999999999999976443 3332 456788889988 9999999999999665 5
Q ss_pred CcEEEEEe-cCCCceEEEEEec--CCCeEEEEeCCCcEEEEECCCCeEEEee-cccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 349 GECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 349 ~~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
++.+..+. .|...|.+++|+| +++++++++.||.|++||++++...... ..+...+.+++|+|+|.++++|+.|+.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 55555554 5667899999999 9999999999999999999876664443 444457999999999999999999999
Q ss_pred EEEEECCCCe-e--eeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC---ccCceeEEEEeecCC
Q 008717 425 ILLLDREANF-E--RWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---HKRARFVIRSCFGGF 497 (556)
Q Consensus 425 I~i~d~~~~~-~--~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~---~~~~~~~i~~~~~s~ 497 (556)
|++||++++. . .+.. |..+|++++|+|+|.+|++++ ++.|++||+++. +.+..+.. |...+....++| +|
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 270 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDI-DD 270 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEE-CT
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEE-CC
Confidence 9999999887 3 4555 899999999999999999999 559999999987 66655554 333222122566 99
Q ss_pred CCcEEEEeeC-CCcEEEEEcCCCc
Q 008717 498 EQAFIASGSE-DSQNVPEILLSES 520 (556)
Q Consensus 498 ~~~~l~sgs~-dg~v~iwd~~~~~ 520 (556)
+|++|++++. |+.|++|++.++.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCEEEEecCCCCcEEEEEEcccc
Confidence 9999999998 9999999996543
No 103
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.3e-29 Score=258.61 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=176.5
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCee--EEEEEecCCCCCeEEEEeCC--------CCCEEEEEeCCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSP--------NDHQLLTCGQEE 339 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~~~dg 339 (556)
.|...+....+++++.+||+|+.|++|+|||..++... .....+.+|.+.|.+++|+| |+++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 34444555555667788999999999999999875332 23345789999999999998 789999999999
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEe----------------------
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESW---------------------- 396 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~---------------------- 396 (556)
+|+|||+.++.++..+..|...+.+++|+|++ .+|++++.|+.|++||++++.....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999988888888899999999999987 4799999999999999976432111
Q ss_pred ---ecccCCCeeEEEEc-cCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceEE------------------EEEcC-
Q 008717 397 ---KGQKTLRISDMAIT-DDGKRIISICREAAILLLDREANF--ERWIEEEEVITS------------------FSLSK- 451 (556)
Q Consensus 397 ---~~~~~~~v~~v~~s-~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~~------------------v~~sp- 451 (556)
...+...+.++.|+ |+++.+++++.|+++++||+.... ..+..+...+.. ..++|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 11334478889887 799999999999999999998765 222233222222 23333
Q ss_pred -CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 452 -DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 452 -~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
++.++++|+.||.|++||+.++ +.+..+.+|...+.. ++| +|||++||++++|| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~s--vaf-spdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVD--FCW-HQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEE--EEE-CTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEE--EEE-cCCCCEEEEEeCCC-eEEEEEe
Confidence 3456777888999999999988 777888888887554 667 99999999999776 5556543
No 104
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=275.58 Aligned_cols=241 Identities=10% Similarity=0.069 Sum_probs=194.8
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
..+|.+.|++++|+|+|++||+|+.||+|+||+..+. ..... ..|..+|.+++|+| +++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 3589999999999999999999999999999998743 23333 35788999999999 8899999999999999999
Q ss_pred CCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe-----------ecccCCCeeEEEEccC-CCE
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-----------KGQKTLRISDMAITDD-GKR 415 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~v~~v~~s~~-g~~ 415 (556)
+++++..+. +...|++++|+|+++++++|+.||.|++||+++..+..+ ...|.+.|.+++|+|+ +..
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 999998886 667899999999999999999999999999988765321 2335568999999996 468
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeec------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008717 416 IISICREAAILLLDREANF--ERWIEE------------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~--~~~~~~------------------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~ 475 (556)
+++++.|+.| +||+++++ ..+..+ ...|++++|+|+|++|++++.||.|++||++++ +
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~ 244 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-H 244 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-C
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-c
Confidence 9999999999 99999987 333323 467999999999999999999999999999987 6
Q ss_pred ceeE--E---eCc-------------cCceeEEEEee-cCCCC-cEEEEeeCC-----CcEEEEEc
Q 008717 476 LVSR--Y---KGH-------------KRARFVIRSCF-GGFEQ-AFIASGSED-----SQNVPEIL 516 (556)
Q Consensus 476 ~~~~--~---~~~-------------~~~~~~i~~~~-~s~~~-~~l~sgs~d-----g~v~iwd~ 516 (556)
++.. + .+| ...++.+.++. .+|++ .+|++|+.| +.+.+|++
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 6543 2 123 23444433221 13554 577888776 37899985
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.5e-27 Score=234.95 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=207.2
Q ss_pred CCCcceeEEecc--cCC--cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE
Q 008717 259 RIPSQTLQILEA--HSD--EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (556)
Q Consensus 259 ~~~~~~~~~l~~--h~~--~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 334 (556)
.+|..+.++|.+ ..+ ..++++||+++ +||+| .|++|+|||+.++... ....+.+|...|.+++|+|++++|++
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-EEEEecCCCCeEEEEEECCCCCEEEE
Confidence 345556566653 222 35789999986 67766 5999999999976432 33445678889999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC-eEEEeecccCCCeeEEEEccCC
Q 008717 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~s~~g 413 (556)
|+.||+|++||+.+++++..+..|...+.++. +++..+++++.++.+++|+.... ........+...+..+.+++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999988877655 45789999999999999998753 3333344455589999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe------eeeeecCCceEEEEEcCCCCEE---EEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 414 KRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYL---LVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~------~~~~~~~~~i~~v~~sp~~~~l---~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+++++++.|+.|++||+++++ .....+...|.++.++|++..+ ++++.++.|++||.... ....... +.
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~-~~ 240 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AH 240 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEE-CS
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccccc-ce
Confidence 999999999999999998765 3445677889999999977543 35567899999999887 5554444 44
Q ss_pred CceeEEEEeecCCCCcEEEEee--CCCcEEEEEcCCCceeeeecCCCcccc
Q 008717 485 RARFVIRSCFGGFEQAFIASGS--EDSQNVPEILLSESVAAAASSLDNFVS 533 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v~ 533 (556)
..+.. .+| ++++..+++++ .|+.|++||+.+++++....+|.+.|.
T Consensus 241 ~~v~~--~~~-~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 241 SQVCS--ILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp SCEEE--EEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred eeeee--eee-cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 44333 555 77888776654 799999999999999988888876543
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8e-29 Score=249.98 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=164.2
Q ss_pred ccCCcEEEEEEccCCCEEEEE--eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 270 AHSDEVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
.+...+.+++|||||+++|++ +.|++|+|||+.+. .....+. |.+.|.+++|+|||+++++++.+ .+.+|+..
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEec
Confidence 455679999999999998754 47899999999876 3445554 77889999999999999998855 67777777
Q ss_pred CCcEEEE--EecCCCceEEEEEecCCCeEEEEeCCC----cEEEEECCCCeEE----EeecccCCCeeEEEEccCCCEEE
Q 008717 348 SGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTDK----SICLWDLDGRELE----SWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 348 ~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~----~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
+++.+.. ...|...|.+++|+|+++.+++++.|+ .++.||+...... .....+...|++++|+|+|++|+
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 7776543 346788899999999999999999887 5888988654321 22234445899999999999999
Q ss_pred EEeCCCeEEEEECCCCe--eee-eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 418 SICREAAILLLDREANF--ERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~--~~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
+|+.|++|+|||+++++ ..+ .+|...|++++|+|||++|++|+.|++|+|||+...
T Consensus 286 sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 286 LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999988 333 479999999999999999999999999999999654
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.9e-28 Score=246.25 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=183.2
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEE-EEEeCCCcE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAI 341 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i 341 (556)
+++..+++|.+.|++++|+|||++||+|+.++ ++||++.+. ....... ...+..+++.++++.+ ++++.|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEE
Confidence 44556788999999999999999999998765 789998753 2222222 2357888999988887 567778999
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC--eEEEeecccCCCeeEEEEccCCCEEEE-
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITDDGKRIIS- 418 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~- 418 (556)
++||+.+++++..+. +...|.+++|+++ .++++ .|+.|++||+.+. .+..+.. ....+++++ ..+++
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEE
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEe
Confidence 999999999998887 5668999999875 34444 4789999999865 3322222 344566676 56666
Q ss_pred -EeCCCeEEEEECCCCe------------------eeeeecCCceEEEEEcCCCCEEEEEEcCCe-EEEEEcCCCCccee
Q 008717 419 -ICREAAILLLDREANF------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVS 478 (556)
Q Consensus 419 -~~~d~~I~i~d~~~~~------------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~-I~lwd~~~~~~~~~ 478 (556)
|+.||.|++||+.++. ..+.+|...|++++|+|+|++|++|+.|++ |++||++++ +.+.
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~ 232 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVR 232 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEE
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEE
Confidence 5789999999998743 456679999999999999999999999998 999999998 8889
Q ss_pred EEe-C-ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 479 RYK-G-HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 479 ~~~-~-~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+. + |...+.. ++| +|++++|++++.|++|++||+..+.
T Consensus 233 ~~~~g~h~~~v~~--~~~-s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 233 EFRRGLDRADVVD--MKW-STDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEECTTCCSCEEE--EEE-CTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEcCCCCCcEEE--EEE-CCCCCEEEEEECCCEEEEEEccCCC
Confidence 998 5 8887655 566 9999999999999999999998654
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.7e-28 Score=244.14 Aligned_cols=238 Identities=13% Similarity=0.180 Sum_probs=192.6
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCC------eeEEE
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDG------QVSLK 310 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--~g~~las~s~dg~i~iwd~~~~~------~~~~~ 310 (556)
+..+.+..+.+|+-... ....+....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++. .....
T Consensus 27 ~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 27 ATCSSDQHIKVFKLDKD---TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEETTSEEEEEEECSS---SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEeeCCCeEEEEECCCC---CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 34444555666643321 111246778889999999999999 69999999999999999998642 12456
Q ss_pred EEecCCCCCeEEEEeCCC--CCEEEEEeCCCcEEEEECCCCcEEEEEe-------------cCCCceEEEEEecC---CC
Q 008717 311 HRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGECLHVYE-------------KTGVGLISCGWFLD---GG 372 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~~~~---~~ 372 (556)
..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. .+...+.+++|+|+ +.
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC
T ss_pred eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc
Confidence 778899999999999999 9999999999999999998876543332 46778999999997 99
Q ss_pred eEEEEeCCCcEEEEECCCCeE--EEeecccCCCeeEEEEccCC----CEEEEEeCCCeEEEEECCCC-------------
Q 008717 373 GIFAGMTDKSICLWDLDGREL--ESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREAN------------- 433 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~s~~g----~~l~~~~~d~~I~i~d~~~~------------- 433 (556)
.+++++.++.+.+|+...... ......|...|++++|+|++ ++|++++.||.|++||+++.
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 999999999998888876554 33344455699999999998 89999999999999999874
Q ss_pred ---------------------------------e--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 434 ---------------------------------F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 434 ---------------------------------~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
. ..+.+|...|++++|+|++++|++++.||.|++||+.++ +.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~ 342 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS-NEFK 342 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC-cchh
Confidence 1 334468889999999999999999999999999999887 4444
Q ss_pred EE
Q 008717 479 RY 480 (556)
Q Consensus 479 ~~ 480 (556)
.+
T Consensus 343 ~~ 344 (351)
T 3f3f_A 343 CM 344 (351)
T ss_dssp EE
T ss_pred he
Confidence 33
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-28 Score=251.49 Aligned_cols=245 Identities=12% Similarity=0.043 Sum_probs=195.8
Q ss_pred ecccCCcEEEEEEccCCCEE-EEEeCCCcEEEEEee--cCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 268 LEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVK--EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~l-as~s~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
..+|.+.|++++|+|+|++| ++|+.||.|+|||+. ++.....+. ...|...|.+++|+|++++|++++.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 45788999999999999996 899999999999998 554332222 13678899999999999999999999999999
Q ss_pred ECCCCcEEE----EEecCCCceEEEEEecC---CCeEEEEeCCCcEEEEECCCCe-EEEeecccCCCeeEEEEccCCCEE
Q 008717 345 DVNSGECLH----VYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRI 416 (556)
Q Consensus 345 d~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~s~~g~~l 416 (556)
++.+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||++++. +..+...|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 998876543 77789999999999999 9999999999999999998654 444455666699999999 99999
Q ss_pred EEEeCCCeEEEEECCCCe-e-eee-------------------------ecCCceEEEEEcCCCCEEEEEE-cCCeEEEE
Q 008717 417 ISICREAAILLLDREANF-E-RWI-------------------------EEEEVITSFSLSKDNKYLLVNL-INQEIHLW 468 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~-~-~~~-------------------------~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lw 468 (556)
++++.|+.|++||+.+++ . .+. .....|.+++|+|++++|++++ .++.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 999999999999999887 2 222 2235689999999999999999 89999999
Q ss_pred Ec--CCCC--cceeEEeCccCceeEEEEeecCCCCcEEEEeeC------CCcEEEEEcCC
Q 008717 469 SI--ESDP--KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQNVPEILLS 518 (556)
Q Consensus 469 d~--~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~------dg~v~iwd~~~ 518 (556)
++ .++. ..+..+.+| ..+ ..++| +|++.++++++. +..|.+|.+..
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v--~~~~~-~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNV--ISLSA-HNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCE--EEEEE-ETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeccCCCCceeeccEeccC-Cce--EEEEe-cCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99 3321 456667777 443 34666 786555555443 45588887653
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-28 Score=245.59 Aligned_cols=211 Identities=18% Similarity=0.331 Sum_probs=183.0
Q ss_pred cceeEEecccCCcEEEEEEccC--CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~ 337 (556)
.+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++ .......+..|...|.+++|+|+ +.+|++++.
T Consensus 45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 4567788999999999999987 999999999999999999965 33466778889999999999999 999999999
Q ss_pred CCcEEEEECCCCc--EEEEEecCCCceEEEEEec-------------CCCeEEEEeCCCcEEEEECCCCe----EEEeec
Q 008717 338 EEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFL-------------DGGGIFAGMTDKSICLWDLDGRE----LESWKG 398 (556)
Q Consensus 338 dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~ 398 (556)
|+.|++||+.++. ....+..|...|.+++|+| ++.++++++.||.|++||+++.. ......
T Consensus 124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 9999999998873 4556778899999999999 69999999999999999997532 333344
Q ss_pred ccCCCeeEEEEccC---CCEEEEEeCCCeEEEEECCCCe-------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 399 QKTLRISDMAITDD---GKRIISICREAAILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 399 ~~~~~v~~v~~s~~---g~~l~~~~~d~~I~i~d~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
.|...|.+++|+|+ +.++++++.||.|++||+.++. .....+...|++++|+|++++|++++.||.|++|
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 55568999999999 8999999999999999999863 1222378889999999999999999999999999
Q ss_pred EcCCC
Q 008717 469 SIESD 473 (556)
Q Consensus 469 d~~~~ 473 (556)
|+...
T Consensus 284 ~~~~~ 288 (379)
T 3jrp_A 284 KENLE 288 (379)
T ss_dssp EEEET
T ss_pred eCCCC
Confidence 99854
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-29 Score=257.07 Aligned_cols=229 Identities=9% Similarity=0.040 Sum_probs=182.5
Q ss_pred EEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
+.+++|...|++++|+|+| .++.+.+|+.... ....+ .|...|.+++|||+|+.||+++.||.|++||
T Consensus 46 ~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd 113 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFK 113 (588)
T ss_dssp SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc----eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 4447888888888888887 4666666654321 11122 5678899999999999999999999999999
Q ss_pred CCCCcEEEEEecCCC-----ceEEEEEecCCCeEEEEeCCCcEEEEECCCCe--------EEEee---cccCCCeeEEEE
Q 008717 346 VNSGECLHVYEKTGV-----GLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--------LESWK---GQKTLRISDMAI 409 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~---~~~~~~v~~v~~ 409 (556)
..+ ++..+. |.. .+.+++|+|||++|++|+.||+|++||+.++. +..+. ..|...|.+++|
T Consensus 114 ~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw 190 (588)
T 2j04_A 114 DNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW 190 (588)
T ss_dssp TTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred CCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence 644 666676 654 49999999999999999999999999998764 34442 445569999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCee-----ee-eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 410 TDDGKRIISICREAAILLLDREANFE-----RW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 410 s~~g~~l~~~~~d~~I~i~d~~~~~~-----~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
+|+| +++++.|++|++||+.++.. .+ ..|...|.+++|+ |+.||+++ ++.|++||+.++ +......+|
T Consensus 191 SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~-~~~~~~~gh 264 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY-SISSLKTGS 264 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT-EEEEEECSC
T ss_pred cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC-eEEEEEcCC
Confidence 9999 88899999999999988772 23 2677899999999 68999887 799999999987 543333389
Q ss_pred cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 484 KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
...++.+.+.- +|++..|+++++||+ ++|.+.
T Consensus 265 ~~~V~~va~~~-s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 265 LENFHIIPLNH-EKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSCCCEEEETT-CSSCEEEEECSSCEE-EEEESS
T ss_pred CceEEEEEeee-CCCCCEEEEEcCCCC-EEEeec
Confidence 99877754322 789999999999999 999876
No 112
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1.5e-27 Score=237.36 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=191.8
Q ss_pred EEeCCCc--EEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEECCCCc-----EEEEEecCCC
Q 008717 289 SSSKDQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTGV 360 (556)
Q Consensus 289 s~s~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~ 360 (556)
+|...|+ ++++... .++..+..++.+|.+.|++++|+|+ +++|+||+.|++|++||+.+++ +...+.+|..
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 3434444 3344443 2455677789999999999999997 6899999999999999987643 5677889999
Q ss_pred ceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---eee
Q 008717 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERW 437 (556)
Q Consensus 361 ~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~~~ 437 (556)
.|.+++|+|+++++++++.|+.|++|+............+...+..+.+++++..+++++.|+.+++||..... ...
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 99999999999999999999999999998877766666666689999999999999999999999999998776 334
Q ss_pred eecCCceEEEEEcCCC--CEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 438 IEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 438 ~~~~~~i~~v~~sp~~--~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
..|...+..++|++++ .++++++.|+.|++||++++ +.+..+.+|...+.. ++| +|++++|++|+.||.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~--~~~-s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNT--VTV-SPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEE--EEE-CTTSSEEEEEETTCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEE--EEE-CCCCCEEEEEeCCCeEEEEE
Confidence 5678899999999865 57889999999999999998 899999999998665 556 99999999999999999999
Q ss_pred cCCCceeeeecC
Q 008717 516 LLSESVAAAASS 527 (556)
Q Consensus 516 ~~~~~~~~~~~~ 527 (556)
+.+.+.......
T Consensus 244 ~~~~~~~~~~~~ 255 (340)
T 4aow_A 244 LNEGKHLYTLDG 255 (340)
T ss_dssp TTTTEEEEEEEC
T ss_pred eccCceeeeecC
Confidence 998877655443
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=250.37 Aligned_cols=189 Identities=11% Similarity=0.167 Sum_probs=163.2
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC-----CeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK-----PVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
+|...|.+++|||+|++||+++.||.|+|||... ....+. |.. .|.+++|||||++|++|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5688999999999999999999999999999542 555566 665 49999999999999999999999999
Q ss_pred ECCCCc-------EEEEE----ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE----EEeecccCCCeeEEEE
Q 008717 345 DVNSGE-------CLHVY----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL----ESWKGQKTLRISDMAI 409 (556)
Q Consensus 345 d~~~~~-------~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~v~~ 409 (556)
|+.++. .+.++ .+|...|.+++|+||| +++++.|+.|++||+.++.. ..+...|...|.+++|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 999885 36776 5667899999999999 88999999999999987653 2343455568999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCee-eee-ecCCceEEEEE--cCCCCEEEEEEcCCeEEEEEc
Q 008717 410 TDDGKRIISICREAAILLLDREANFE-RWI-EEEEVITSFSL--SKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 410 s~~g~~l~~~~~d~~I~i~d~~~~~~-~~~-~~~~~i~~v~~--sp~~~~l~~~~~dg~I~lwd~ 470 (556)
+ |+.+++++ +++|++||+.++.. ... +|...+.+++| +|++..+++++.||+ ++|..
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9 68888887 69999999999883 444 89999999999 999999999999999 99986
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.4e-27 Score=242.60 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=203.9
Q ss_pred EecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEE
Q 008717 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWD 345 (556)
Q Consensus 267 ~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd 345 (556)
.+.+|.+.|++++|+|++.++++++.|+.|++||+.++ .....+..|...+.+++|+|+++++++++ .|+.|++||
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 45689999999999999999999999999999999865 34566778899999999999999886554 799999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEe--------CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEE-
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM--------TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI- 416 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l- 416 (556)
+.+++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+++++......+.. .+.+++|+|+++.+
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKRHIVSGNTENKIY 318 (433)
T ss_dssp TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEEEEEECSSTTEEE
T ss_pred CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC-CcceEEECCCCCEEE
Confidence 9999988887654 4589999999999999988 58899999998877665554433 78999999999755
Q ss_pred EEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEc---------------CCeEEEEEcCCCCcceeEE
Q 008717 417 ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI---------------NQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~---------------dg~I~lwd~~~~~~~~~~~ 480 (556)
++++.++.|++||+.+++ .....+...+.+++|+|+|+++++++. ||.|++||+.++ +.+..+
T Consensus 319 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~ 397 (433)
T 3bws_A 319 VSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFW 397 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEE
T ss_pred EEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEe
Confidence 566899999999999887 555667888999999999999998886 469999999988 888888
Q ss_pred eCccCceeEEEEeecCCCCcEEEEeeC-CCcEEEEEcCC
Q 008717 481 KGHKRARFVIRSCFGGFEQAFIASGSE-DSQNVPEILLS 518 (556)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~l~sgs~-dg~v~iwd~~~ 518 (556)
..+.. + ..+.| +|+|++|++++. |+.|++|++.+
T Consensus 398 ~~~~~-~--~~~~~-s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 398 EAGNQ-P--TGLDV-SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECSSS-E--EEEEE-CTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCCCC-C--ceEEE-cCCCCEEEEEECCCCeEEEEEecC
Confidence 76543 2 33566 999999988875 99999999863
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=6.5e-28 Score=245.99 Aligned_cols=239 Identities=14% Similarity=0.201 Sum_probs=172.4
Q ss_pred cccCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC---CCEEEEEeCCCcEEEE
Q 008717 269 EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRW 344 (556)
Q Consensus 269 ~~h~~~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iw 344 (556)
.+|...|.+++|+| ++.+|++++.||.|++||+.++ .....+. +...+.++.|+|. +.++++++.||.|++|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 36999999999999 7889999999999999999875 3334443 7788999999984 4599999999999999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEecCCCe-EEEEeCCCcEEEEECCCCe--EEEee--------------cccCCCeeEE
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWDLDGRE--LESWK--------------GQKTLRISDM 407 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~vwd~~~~~--~~~~~--------------~~~~~~v~~v 407 (556)
|+.+++.+..+..|...|.+++|+|++.+ +++++.||.|++||++... +..+. ..+...|.++
T Consensus 172 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp ESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred eCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999999999985 8899999999999997532 22221 3455589999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCe-------------------------------------------------eeee
Q 008717 408 AITDDGKRIISICREAAILLLDREANF-------------------------------------------------ERWI 438 (556)
Q Consensus 408 ~~s~~g~~l~~~~~d~~I~i~d~~~~~-------------------------------------------------~~~~ 438 (556)
+|+|+++++++++.|+.|++||+.++. ..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 999999999999999999999987643 1224
Q ss_pred ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+|...|++++|+|++++|++++.||.|++||+.+. +.+.....+... ..+.........+.+.|+.+++|+..
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY-EPVPDDDETTTK-----SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC-CccCCCCceEec-----cccccccceeecccCccCceeecCCc
Confidence 57889999999999999999999999999999988 666655444332 11212344456677889999999764
No 116
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-27 Score=237.66 Aligned_cols=215 Identities=17% Similarity=0.239 Sum_probs=189.1
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
.....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-----CeEEEEECCCCe-------------eeeeecCC--ceEEE
Q 008717 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANF-------------ERWIEEEE--VITSF 447 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~I~i~d~~~~~-------------~~~~~~~~--~i~~v 447 (556)
++++....... +...|.+++|+|+++++++++.+ +.|++||+.... .....+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 98766555444 44489999999999999999999 999999997653 22333444 89999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 448 ~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
+|+|++++|++++.||.|++||+++....+..+..|...+.. +.| +|++++|++++.||.|++||+.+++......
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD--MQF-SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE--EEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE--EEE-CCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 999999999999999999999999843888999999888655 555 9999999999999999999999987765543
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.9e-27 Score=226.74 Aligned_cols=248 Identities=10% Similarity=0.109 Sum_probs=180.7
Q ss_pred ceeEEecccCC----cEEEEEEccCCC---EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC----------------
Q 008717 263 QTLQILEAHSD----EVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP---------------- 319 (556)
Q Consensus 263 ~~~~~l~~h~~----~V~~~~~sp~g~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~---------------- 319 (556)
+.+..++...+ .+.++.|-..|- -+++++. ..|++|+..++.+.+..+++..|..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 34444554433 355666655443 5667764 69999999987777888888888764
Q ss_pred ---------eEEEEeCCC----CCEEEEEeC--------------------CCcEEEEEC-CCCcEEEEEecCCCceEEE
Q 008717 320 ---------VFTVSWSPN----DHQLLTCGQ--------------------EEAIRRWDV-NSGECLHVYEKTGVGLISC 365 (556)
Q Consensus 320 ---------v~~l~~s~~----~~~l~s~~~--------------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~i 365 (556)
|..++++|| ++++++++. |+.|++|++ .+|+.+..+..|...+..+
T Consensus 105 ~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL 184 (356)
T ss_dssp EECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred eeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence 445666677 667776553 888999999 4588888888888888889
Q ss_pred EEec---CCCeEEEEeCCCcEEEEECCCCeE-EEeecccC--CCeeEEEEccCCCEE------------EEEeCCCeEEE
Q 008717 366 GWFL---DGGGIFAGMTDKSICLWDLDGREL-ESWKGQKT--LRISDMAITDDGKRI------------ISICREAAILL 427 (556)
Q Consensus 366 ~~~~---~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~--~~v~~v~~s~~g~~l------------~~~~~d~~I~i 427 (556)
+|+| ++..|++++.|++|++||+++++. ..+..++. ..+.+++|+|+|.++ ++|+.|++|++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 9998 779999999999999999997654 55544332 367788999999876 56778999999
Q ss_pred EECCCCe-eeee------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc
Q 008717 428 LDREANF-ERWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 428 ~d~~~~~-~~~~------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
||..+++ .... +|...+.+..+ ++.++++++.|++|+|||+.++ +++.++.+|...+.. .++| +|||+
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs-~vaf-SPDG~ 339 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWS-FVKW-SGTDS 339 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCC-EEEE-CSSSS
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEE-EEEE-CCCCC
Confidence 9999987 2221 34444444444 3889999999999999999999 999999999876432 1456 99999
Q ss_pred EEEEeeCCCcEEEEEc
Q 008717 501 FIASGSEDSQNVPEIL 516 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~ 516 (556)
+|++|+.|++|+|||+
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999985
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=237.86 Aligned_cols=264 Identities=8% Similarity=0.060 Sum_probs=196.1
Q ss_pred cceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCC------eeEE
Q 008717 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------QVSL 309 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~------~~~~ 309 (556)
..++.++.+..+.+|+... .+.+..+. ...|.++.|+|+ +++++.|++|++|+..... ....
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~-------~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKD-------SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp EEEEEEEETTEEEEEEESS-------SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred CEEEEECCCCcEEEEECCC-------CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455667777788876543 23344444 467888889988 9999999999999765210 1121
Q ss_pred EEE-ecCCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEE
Q 008717 310 KHR-LSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICL 385 (556)
Q Consensus 310 ~~~-~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~v 385 (556)
... ..+|.++|.+++|+| +++++++++.||+|++||+.++++...... +...+.+++|+|++.++++|+.||.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 222 236778999999999 999999999999999999999998776643 4557999999999999999999999999
Q ss_pred EECCCCeEE--EeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeee---ecCCce--EEEEEcCCCCEE
Q 008717 386 WDLDGRELE--SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI---EEEEVI--TSFSLSKDNKYL 456 (556)
Q Consensus 386 wd~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~---~~~~~i--~~v~~sp~~~~l 456 (556)
||++++... .+...|...|++++|+|+|.+|++++ ++.|++||+++.. ..+. .+...+ .+++|+|+|++|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 999876543 44443667999999999999999999 5599999999876 1121 133334 369999999999
Q ss_pred EEEEc-CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC---CCcEEEEeeCCCcEEEEEcCCCc
Q 008717 457 LVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF---EQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 457 ~~~~~-dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
++++. |+.|++|++.+. ...... .. .....| ++ +...+++++.||.+.++-.....
T Consensus 276 ~~~s~~d~~i~v~~~~~~-~~~~~~----~~--~~~~~~-~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKK-TKNWTK----DE--ESALCL-QSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EEEETTTTEEEEEEECTT-TCSEEE----EE--EEECCC-----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred EEecCCCCcEEEEEEccc-ccceEe----cC--ceeEec-CccccccceeEEEecCCceEEEEecCCe
Confidence 99998 999999999765 322222 22 122444 77 88899999999999988655443
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.7e-27 Score=245.92 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=176.3
Q ss_pred EEecCCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEECCC----------CcEEEEEecCCCceEEEEEecCCC-eEEEEe
Q 008717 311 HRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNS----------GECLHVYEKTGVGLISCGWFLDGG-GIFAGM 378 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~ 378 (556)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+..|...+++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999976 567788889999999999999988 999999
Q ss_pred CCCcEEEEECCCCe----E---EEeecccCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCC---e--eeeeecCCceE
Q 008717 379 TDKSICLWDLDGRE----L---ESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREAN---F--ERWIEEEEVIT 445 (556)
Q Consensus 379 ~dg~i~vwd~~~~~----~---~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~---~--~~~~~~~~~i~ 445 (556)
.||.|++||+.... . ......+...|.+++|+| ++..+++++.|+.|++||+++. . ..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999997621 1 223334556899999999 6789999999999999999976 2 55568899999
Q ss_pred EEEEcCCCC-EEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCC
Q 008717 446 SFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLS 518 (556)
Q Consensus 446 ~v~~sp~~~-~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~ 518 (556)
+++|+|++. ++++|+.||.|++||+++...++..+.+|...+.. +.| +|+++ +|++++.||.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~--i~~-sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ--VQW-SPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE--EEE-CSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE--EEE-CCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999987 68899999999999999854788999999988655 556 88884 799999999999999987
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.8e-26 Score=236.60 Aligned_cols=258 Identities=8% Similarity=0.026 Sum_probs=209.3
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE--EecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH--RLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
+.+..+..+ ..+.+++|+|++.++++++.++.|++||+.++....... .+.+|...|.+++|+|++..+++++.|+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 344555544 445699999988888888889999999998764321111 34588999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
|++||+.+++.+..+..+...+.+++|+|+++.+++++ .|+.|++||++++........+. .+.+++|+|+|+.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEE
Confidence 99999999999999988899999999999999886555 79999999998877655555443 69999999999999988
Q ss_pred e--------CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCCcceeEEeCccCceeE
Q 008717 420 C--------REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYL-LVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (556)
Q Consensus 420 ~--------~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~ 489 (556)
+ .|+.|++||+.+++ .....+...+.+++|+|+++++ ++++.++.|++||+.++ +.+..+. +...+.
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~- 348 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDKPN- 348 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEE-
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCCCC-
Confidence 8 48899999999887 5555666789999999999765 55688999999999987 7777776 444433
Q ss_pred EEEeecCCCCcEEEEeeC---------------CCcEEEEEcCCCceeeeecC
Q 008717 490 IRSCFGGFEQAFIASGSE---------------DSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~---------------dg~v~iwd~~~~~~~~~~~~ 527 (556)
.++| +|+|++|++++. ||.|++||+.+++.......
T Consensus 349 -~~~~-s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 349 -TIAL-SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp -EEEE-CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred -eEEE-cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 3566 999999888876 57999999999887766544
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-27 Score=260.65 Aligned_cols=210 Identities=19% Similarity=0.327 Sum_probs=184.1
Q ss_pred cceeEEecccCCcEEEEEEccC--CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC--CCEEEEEeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~ 337 (556)
.+....+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++ .......+.+|...|.+++|+|+ ++.+++|+.
T Consensus 43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence 4667789999999999999998 999999999999999999964 33467788899999999999999 999999999
Q ss_pred CCcEEEEECCCC--cEEEEEecCCCceEEEEEec-------------CCCeEEEEeCCCcEEEEECCCC----eEEEeec
Q 008717 338 EEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFL-------------DGGGIFAGMTDKSICLWDLDGR----ELESWKG 398 (556)
Q Consensus 338 dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~ 398 (556)
||.|++||+.++ .....+..|...|.+++|+| ++..+++|+.||.|++||+++. .......
T Consensus 122 dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec
Confidence 999999999877 34456678899999999999 5899999999999999999754 3444445
Q ss_pred ccCCCeeEEEEccC---CCEEEEEeCCCeEEEEECCCCe-------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 008717 399 QKTLRISDMAITDD---GKRIISICREAAILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 399 ~~~~~v~~v~~s~~---g~~l~~~~~d~~I~i~d~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lw 468 (556)
.|...|.+++|+|+ +.++++++.||.|++||+.++. .....+...|++++|+|+|+++++++.||.|++|
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vw 281 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECC
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 56669999999999 8999999999999999999863 2233478889999999999999999999999999
Q ss_pred EcCC
Q 008717 469 SIES 472 (556)
Q Consensus 469 d~~~ 472 (556)
|+.+
T Consensus 282 d~~~ 285 (753)
T 3jro_A 282 KENL 285 (753)
T ss_dssp BCCS
T ss_pred ecCC
Confidence 9975
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=3e-26 Score=221.78 Aligned_cols=194 Identities=14% Similarity=0.050 Sum_probs=148.1
Q ss_pred CcEEEEEEccC----CCEEEEEeC--------------------CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-
Q 008717 273 DEVWFLQFSHD----GKYLASSSK--------------------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP- 327 (556)
Q Consensus 273 ~~V~~~~~sp~----g~~las~s~--------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~- 327 (556)
..|++++|+|| ++++++++. |+.|++|++..++ +.+..+..|...+..++|+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeecc
Confidence 36778888888 778887653 8888888885433 34456667888888888888
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC---CceEEEEEecCCCeE------------EEEeCCCcEEEEECCC
Q 008717 328 --NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG---VGLISCGWFLDGGGI------------FAGMTDKSICLWDLDG 390 (556)
Q Consensus 328 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------~~~~~dg~i~vwd~~~ 390 (556)
++..|++++.|++|+|||+.+|++++++..|. ..+.+++|+|+|.++ ++|+.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 77999999999999999999999999998653 367788999999887 5677899999999988
Q ss_pred CeEEEee-----cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe--eeeeecCCceE-EEEEcCCCCEEEEEEcC
Q 008717 391 RELESWK-----GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVIT-SFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 391 ~~~~~~~-----~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~~~~i~-~v~~sp~~~~l~~~~~d 462 (556)
++..... ..+...+.+. +.++..+++++.|++|+|||+.+++ ..+.+|...+. +++|+|||++|++|+.|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred CEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 7654332 2333334433 3347899999999999999999998 45556766554 68999999999999999
Q ss_pred CeEEEEEc
Q 008717 463 QEIHLWSI 470 (556)
Q Consensus 463 g~I~lwd~ 470 (556)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999996
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.1e-26 Score=227.82 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=181.0
Q ss_pred EEEEEecCCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEECCC-CcEE-EEEecCCCceEEEEEecCCCeEEEEeCCCc
Q 008717 308 SLKHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRWDVNS-GECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 382 (556)
.....+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 59999999999999999987 5554 788889999999999999999999999999
Q ss_pred EEEEECCCCeEEEeecccCCCeeEEEE--ccCCCEEEEEeCCCeEEEEECCCCe--eeeeec------------------
Q 008717 383 ICLWDLDGRELESWKGQKTLRISDMAI--TDDGKRIISICREAAILLLDREANF--ERWIEE------------------ 440 (556)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~v~~v~~--s~~g~~l~~~~~d~~I~i~d~~~~~--~~~~~~------------------ 440 (556)
|++||+++........+ ...|.+++| +|++.++++++.|+.|++||+++++ ..+..+
T Consensus 110 v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA 188 (368)
T ss_dssp EEEEETTTTEEEEEEEC-SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred EEEEEcCCCCceeeccc-cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence 99999998887766554 459999999 8999999999999999999998775 222111
Q ss_pred -----------------------CCceEEEEEcCCCCE----EEEEEcCCeEEEEEcCCCC--cceeEEeCccC------
Q 008717 441 -----------------------EEVITSFSLSKDNKY----LLVNLINQEIHLWSIESDP--KLVSRYKGHKR------ 485 (556)
Q Consensus 441 -----------------------~~~i~~v~~sp~~~~----l~~~~~dg~I~lwd~~~~~--~~~~~~~~~~~------ 485 (556)
...+.++.+.++... +++++.|+.|++||++... ..+..+.+|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 133445555554443 9999999999999998752 35667777765
Q ss_pred ------ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCCCccc
Q 008717 486 ------ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 486 ------~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
.+.. ++| +|++++|++|+.||.|++||+.+++.+.....+.+.+
T Consensus 269 ~~~~~~~v~~--~~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 269 APQDIYAVNG--IAF-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp CCEEECCEEE--EEE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred ccccccceEE--EEE-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence 3333 556 9999999999999999999999998887777666543
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.9e-25 Score=223.43 Aligned_cols=232 Identities=8% Similarity=0.078 Sum_probs=189.0
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEECCCCcEEEEEecCCCceE
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 363 (556)
.++++++.|+.|++||+.++ +....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence 46788899999999999876 4556666664 58999999999987 566789999999999999988887665 899
Q ss_pred EEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEE-EEEeCCCeEEEEECCCCe-eeeeec
Q 008717 364 SCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI-ISICREAAILLLDREANF-ERWIEE 440 (556)
Q Consensus 364 ~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~I~i~d~~~~~-~~~~~~ 440 (556)
+++|+|+++++++++ .++.|++||+.+++.......+. .+.+++|+|+++.+ ++++.++.|++||+.+++ ......
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 999999999886555 67999999999877665555544 79999999999977 677889999999999988 444555
Q ss_pred CCceEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee---CCCcEEEEEc
Q 008717 441 EEVITSFSLSKDNKYL-LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS---EDSQNVPEIL 516 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l-~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs---~dg~v~iwd~ 516 (556)
...+.+++|+|+++++ ++++.++.|++||++++ +.+..+..+. .+ ..++| +|++++|++++ .++.|++||+
T Consensus 157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~~--~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEA-AP--SGIAV-NPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSS-EE--EEEEE-CTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCC-Cc--cceEE-CCCCCEEEEEecCcCCCcEEEEEC
Confidence 6678999999999988 56677899999999988 7777766443 32 33556 99999999888 6899999999
Q ss_pred CCCceeeeecC
Q 008717 517 LSESVAAAASS 527 (556)
Q Consensus 517 ~~~~~~~~~~~ 527 (556)
.+++.......
T Consensus 232 ~~~~~~~~~~~ 242 (391)
T 1l0q_A 232 GTNKITARIPV 242 (391)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCeEEEEEec
Confidence 98877655443
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.7e-26 Score=235.38 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=166.6
Q ss_pred ceeecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEcc--------CCCEEEEEeCCCcEEEEEeecCCeeE
Q 008717 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--------DGKYLASSSKDQSAIIWEVKEDGQVS 308 (556)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--------~g~~las~s~dg~i~iwd~~~~~~~~ 308 (556)
.+...+.|..+.+|+..... ......+..+.||.+.|++++|+| ||++||+|+.|++|+|||+.++ .
T Consensus 103 ~las~~~d~~v~lw~~~~~~--~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~ 177 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNET--IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---G 177 (393)
T ss_dssp EEEEEETTSCEEEEEEETTE--EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---E
T ss_pred EEEEEeCCCcEEEEECCCCc--cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---c
Confidence 34556667777887643211 111234556889999999999998 8999999999999999999866 3
Q ss_pred EEEEecCCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEECCCCcEEEEE-------------------------ecCCCce
Q 008717 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVY-------------------------EKTGVGL 362 (556)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~v 362 (556)
....+..|..+|.+++|+|++ .+|++++.|++|++||+.+++..... .+|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 445667789999999999987 48999999999999999887654322 2456778
Q ss_pred EEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCe------------------eEEEEcc--CCCEEEEEeC
Q 008717 363 ISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI------------------SDMAITD--DGKRIISICR 421 (556)
Q Consensus 363 ~~i~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------~~v~~s~--~g~~l~~~~~ 421 (556)
.++.|+ |+++.+++++.|+.+++||+...........+...+ ....++| ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 889987 799999999999999999997543322221111122 2233333 3346677889
Q ss_pred CCeEEEEECCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 422 EAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 422 d~~I~i~d~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
||.|++||..++. .....|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999999887 66778889999999999999999998655 6677653
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.6e-25 Score=224.92 Aligned_cols=232 Identities=12% Similarity=0.106 Sum_probs=176.7
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-c
Q 008717 273 DEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-E 350 (556)
Q Consensus 273 ~~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~ 350 (556)
..+..+++.++++.++ +++.|++|++||..++ +.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~---~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK---QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK 131 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC---cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce
Confidence 3588899999988874 6778899999999876 3445554 66799999998764 4443 4789999999988 6
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEE--EeCCCcEEEEECCCCe-----------------EEEeecccCCCeeEEEEcc
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFA--GMTDKSICLWDLDGRE-----------------LESWKGQKTLRISDMAITD 411 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~--~~~dg~i~vwd~~~~~-----------------~~~~~~~~~~~v~~v~~s~ 411 (556)
.+..+.. +...+++++ ..+++ |+.||.|++||+++.. +..+ ..|...|++++|+|
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNR 205 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECT
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECC
Confidence 6555554 444566776 56666 5789999999998654 3334 45556999999999
Q ss_pred CCCEEEEEeCCCe-EEEEECCCCe--eeee-e-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc-ceeEEeC---
Q 008717 412 DGKRIISICREAA-ILLLDREANF--ERWI-E-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKG--- 482 (556)
Q Consensus 412 ~g~~l~~~~~d~~-I~i~d~~~~~--~~~~-~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~-~~~~~~~--- 482 (556)
+|++|++++.|++ |++||+++++ ..+. + |...|++++|+|+|++|++++.|+.|++||++.... ....+.+
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 9999999999998 9999999887 4444 3 899999999999999999999999999999976511 1111111
Q ss_pred ------------------ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 483 ------------------HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 483 ------------------~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
+...... ++| ++++++|++++.||.+++|++..+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~--~a~-~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCK--IAW-ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCE--EEE-SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccccccccceeEEEeccCCCCCceE--EEE-eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111122 455 9999999999999999999987543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7.2e-25 Score=224.89 Aligned_cols=254 Identities=11% Similarity=0.064 Sum_probs=199.6
Q ss_pred EEecccCCcEEEEEEcc--------------CCCEEEEEeCC------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEe
Q 008717 266 QILEAHSDEVWFLQFSH--------------DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp--------------~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 325 (556)
..+.+|...+..+++++ .+..+++++.+ +.|++||+... ....+..|...|.+++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~----~~~~l~~~~~~v~~~~~ 186 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY----NQFVVHRSPQPLMSPAW 186 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC----SCEEEEEESSCEEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC----CCEEEeCCCCcceeeEE
Confidence 45888998888888875 16677766654 79999999743 23566678899999999
Q ss_pred CCCCCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEE-EEeCCCc--EEEEECCCCeEEEeecc
Q 008717 326 SPNDHQLLTCGQEE---AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF-AGMTDKS--ICLWDLDGRELESWKGQ 399 (556)
Q Consensus 326 s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~ 399 (556)
+|||++|++++.++ .|++||+.+++.. .+..+...+.+++|+|||+.|+ +++.++. |++||+++++...+..+
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~ 265 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 265 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC
Confidence 99999999999875 9999999999875 4666778899999999999888 5666554 99999998877665554
Q ss_pred cCCCeeEEEEccCCCEEEEEeCC-C--eEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcC---CeEEEEEcCC
Q 008717 400 KTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIES 472 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d-~--~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~d---g~I~lwd~~~ 472 (556)
. ..+.+++|+|||++|++++.+ + .|++||+.++. ..+..+...+.+++|+|+|++|++++.+ ..|++||+.+
T Consensus 266 ~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 266 R-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp S-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred C-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 4 489999999999999888764 4 68888998877 4555667789999999999999988875 5899999998
Q ss_pred CCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC---cEEEEEcCCCceeeeecCCCccc
Q 008717 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QNVPEILLSESVAAAASSLDNFV 532 (556)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg---~v~iwd~~~~~~~~~~~~~~~~v 532 (556)
+ +. ..+..+. .+ ....| +|+|++|++++.++ .|++||+.++.. ..+..+.+.+
T Consensus 345 ~-~~-~~l~~~~-~~--~~~~~-spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~l~~~~~~v 400 (415)
T 2hqs_A 345 G-GV-QVLSSTF-LD--ETPSL-APNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQV 400 (415)
T ss_dssp C-CE-EECCCSS-SC--EEEEE-CTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEE
T ss_pred C-CE-EEecCCC-Cc--CCeEE-cCCCCEEEEEEcCCCccEEEEEECCCCcE-EEeeCCCCCC
Confidence 7 44 4555554 33 33566 99999999998877 799999986554 4445555444
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.3e-23 Score=212.48 Aligned_cols=226 Identities=12% Similarity=0.137 Sum_probs=182.8
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCC---cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE-EEeC
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQ---SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQ 337 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~ 337 (556)
....+.+.+|...|.+++|||||++|++++.++ .|++||+.++.. ..+..|...+.+++|+|||++|+ +++.
T Consensus 168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~~~~~~~~~spdg~~la~~~~~ 243 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPAFSPDGSKLAFALSK 243 (415)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----EEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----EEeecCCCcccCEEEcCCCCEEEEEEec
Confidence 445678888999999999999999999999875 999999986532 34667888999999999999888 6666
Q ss_pred CCc--EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CC--cEEEEECCCCeEEEeecccCCCeeEEEEccC
Q 008717 338 EEA--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 338 dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
++. |++||+.+++. ..+..+...+.+++|+|||++|++++. ++ .|++||+.++....+..+ ...+.+++|+|+
T Consensus 244 ~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~spd 321 (415)
T 2hqs_A 244 TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSD 321 (415)
T ss_dssp TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTT
T ss_pred CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC-CCcccCeEECCC
Confidence 654 99999998876 566678888999999999999998886 44 688889988766554433 347899999999
Q ss_pred CCEEEEEeCC---CeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEEcCCCCcceeEEeCccC
Q 008717 413 GKRIISICRE---AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 413 g~~l~~~~~d---~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
|++|++++.+ ..|++||+.++. ..+..+ ..+.+++|+|+|++|++++.++ .|++||+.+ .....+.+|..
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g--~~~~~l~~~~~ 398 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDG 398 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS--CCEEECCCSSS
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC--CcEEEeeCCCC
Confidence 9999988764 589999999887 333333 4899999999999999988877 799999875 46788888887
Q ss_pred ceeEEEEeecCCCC
Q 008717 486 ARFVIRSCFGGFEQ 499 (556)
Q Consensus 486 ~~~~i~~~~~s~~~ 499 (556)
.+.. .+| +|..
T Consensus 399 ~v~~--~~~-~~~~ 409 (415)
T 2hqs_A 399 QVKF--PAW-SPYL 409 (415)
T ss_dssp EEEE--EEE-CCCC
T ss_pred CCcC--Ccc-cccc
Confidence 7544 555 7754
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.3e-21 Score=194.36 Aligned_cols=270 Identities=9% Similarity=0.091 Sum_probs=189.7
Q ss_pred CCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCC-CcEEEEEeec-CCeeEEEEEecCCCCC
Q 008717 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKD-QSAIIWEVKE-DGQVSLKHRLSGHRKP 319 (556)
Q Consensus 242 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~d-g~i~iwd~~~-~~~~~~~~~~~~h~~~ 319 (556)
..+..+.+|+..... ..+.+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++.. .+.......+..+. .
T Consensus 12 ~~~~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 12 PESQQIHVWNLNHEG----ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp GGGTEEEEEEECTTS----CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred CCCCeEEEEEECCCC----cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 456677777543211 0122222 3477789999999999999988876 9999999972 23344455555444 7
Q ss_pred eEEEEeCCCCCEEEEEeC-CCcEEEEECC---CCcEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCC-CeE
Q 008717 320 VFTVSWSPNDHQLLTCGQ-EEAIRRWDVN---SGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG-REL 393 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~ 393 (556)
+..++|+|++++|++++. ++.|.+||+. +++.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.+ +.+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 899999999998877765 7889999994 3344445443 34588899999999888887 889999999986 544
Q ss_pred E-----EeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC--Cee---eeee-------cCCceEEEEEcCCCCE
Q 008717 394 E-----SWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA--NFE---RWIE-------EEEVITSFSLSKDNKY 455 (556)
Q Consensus 394 ~-----~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~--~~~---~~~~-------~~~~i~~v~~sp~~~~ 455 (556)
. .........+.+++|+|+|+++++++ .++.|.+||+.. +.. .... ....+..++|+|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 3 22333334788999999999776555 789999999954 331 1111 1235678999999998
Q ss_pred EEEEE-cCCeEEEEEcCC--C-CcceeEEeCccCceeEEEEeecCCCCcEEEEee-CCCcEEEEEcC--CCcee
Q 008717 456 LLVNL-INQEIHLWSIES--D-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQNVPEILL--SESVA 522 (556)
Q Consensus 456 l~~~~-~dg~I~lwd~~~--~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~~--~~~~~ 522 (556)
|+++. .++.|.+||+.. + .+.+..+..+.. + ..++| +|+|++|++++ .++.|.+|++. ++++.
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~--~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-P--RGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-C--CCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-c--ceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 87555 689999999983 2 134444544443 2 23556 99999888887 68999999554 66543
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=9.6e-23 Score=197.62 Aligned_cols=236 Identities=13% Similarity=0.069 Sum_probs=176.2
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CCeeEEEEEecCC-CCCeEEEEeCCCCCEEEEEeC--C
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQ--E 338 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~--d 338 (556)
.....+..|...|.+++|+|+|++|++++ ++.|++||+.+ +. .......| ...+.+++|+|++++|++++. +
T Consensus 32 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 107 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---PEKVDTGFATICNNDHGISPDGALYAISDKVEF 107 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred CceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---ceEeccccccccccceEECCCCCEEEEEEeCCC
Confidence 33455667899999999999999999986 78999999986 53 22334444 467899999999999999983 3
Q ss_pred CcEEE--EECCCCcEEEEEecCCCceEEEEEecCCCeEE-EEeCCCcEEEEEC--CCCeEEEeecccCCCeeEEEEccCC
Q 008717 339 EAIRR--WDVNSGECLHVYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDL--DGRELESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 339 g~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~v~~s~~g 413 (556)
+...| |+..+++ ...+..+. .+..++|+|+++.++ +++.++.+.+|++ .++....+..+ ...+.+++|+|+|
T Consensus 108 ~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg 184 (297)
T 2ojh_A 108 GKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG-EGRNDGPDYSPDG 184 (297)
T ss_dssp SSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS-SSCEEEEEECTTS
T ss_pred CcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC-CCccccceECCCC
Confidence 44444 5555555 34444333 488899999999887 6778898999985 45555544443 3489999999999
Q ss_pred CEEEEEe-CCCeEEEEECC--CCe-eeeeecCCceEEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCCCcc--
Q 008717 414 KRIISIC-REAAILLLDRE--ANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN-----------QEIHLWSIESDPKL-- 476 (556)
Q Consensus 414 ~~l~~~~-~d~~I~i~d~~--~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~d-----------g~I~lwd~~~~~~~-- 476 (556)
+.+++++ .++.+.+|++. ... ..+..+...+.+++|+|+|++|++++.+ +.|++||+.++ +.
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~ 263 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVET 263 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-Ccee
Confidence 9888766 58889999876 233 4555567789999999999999988866 56999999876 44
Q ss_pred eeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
+..+.+|...+.. +.| +|++++|++++.|.
T Consensus 264 ~~~~~~~~~~~~~--~~~-spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 264 LFDLFGGQGTMNS--PNW-SPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEESTTTSCS--CCB-CTTSSEEEEEEECC
T ss_pred eeccCCCCccccc--ceE-CCCCCEEEEEEecc
Confidence 3344466665443 455 99999998887754
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=9.4e-22 Score=194.92 Aligned_cols=270 Identities=12% Similarity=0.105 Sum_probs=191.1
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCCeeEEEEEecCCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRK 318 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (556)
....+..+.+|+..+ .+....+..+...+ +++|+|+|+++++++. ++.|.+||..++.. ....+..+..
T Consensus 15 ~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~ 84 (331)
T 3u4y_A 15 VEQHLRRISFFSTDT-------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQEGQS 84 (331)
T ss_dssp EEGGGTEEEEEETTT-------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEEECSS
T ss_pred EecCCCeEEEEeCcc-------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecccCCC
Confidence 344455666665332 44555666666677 9999999997776655 88999999987632 1455566666
Q ss_pred CeEEEEeCCCCCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEE-eCCCc-EEEEECCC-Ce
Q 008717 319 PVFTVSWSPNDHQLLTCGQEE---AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG-MTDKS-ICLWDLDG-RE 392 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~-i~vwd~~~-~~ 392 (556)
+..+++|+|++++++++..++ .|.+||+.+++.+..+..+. ...+++|+|+|++++++ ..++. |.+|++.. +.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~ 163 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV 163 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence 666699999999999555553 89999999999888876544 46899999999866655 45578 99999864 22
Q ss_pred E----EEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEE-cC
Q 008717 393 L----ESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNL-IN 462 (556)
Q Consensus 393 ~----~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~-~d 462 (556)
+ .... .....+..++|+|+|+++++++ .++.|.+||+.+++ .........+..++|+|+|+++++++ .+
T Consensus 164 ~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 164 LFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp EEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred EeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 2 1112 2223689999999999665554 68899999998766 33344567788999999999877665 46
Q ss_pred CeEEEEEcCCCCcc--eeEEeCc----cCceeE-EEEeecCCCCcEEEEeeC-CCcEEEEEcCCCceee
Q 008717 463 QEIHLWSIESDPKL--VSRYKGH----KRARFV-IRSCFGGFEQAFIASGSE-DSQNVPEILLSESVAA 523 (556)
Q Consensus 463 g~I~lwd~~~~~~~--~~~~~~~----~~~~~~-i~~~~~s~~~~~l~sgs~-dg~v~iwd~~~~~~~~ 523 (556)
+.|.+||+.++ +. +..+..+ ...... -.+.| +|||++|++++. ++.|.+||+.+.....
T Consensus 243 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 243 VDVFNFNQLSG-TLSFVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEEEETTTT-EEEEEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CEEEEEECCCC-ceeeecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 78999999887 55 3333322 111111 11355 999998866555 6699999998766543
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.2e-22 Score=198.28 Aligned_cols=271 Identities=10% Similarity=0.082 Sum_probs=197.6
Q ss_pred eeecCCCCceeeecCCCCCCCCCCcceeEEec-ccCC-cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEec
Q 008717 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSD-EVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLS 314 (556)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~-~h~~-~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~ 314 (556)
++....+..+.+|+..+ .+.+..+. ++.. .+.+++|+|+|++++ +++.++.|.+||+.++. ....+.
T Consensus 4 ~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~ 73 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE---TLGRID 73 (337)
T ss_dssp EEEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC---EEEEEE
T ss_pred EEEcCCCCeEEEEECCC-------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC---eEeeEE
Confidence 34455566777775432 34445554 2222 478899999998765 55567899999998653 223333
Q ss_pred C-C----CCCeEEEEeCCCCCEEEEEe------------CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEE
Q 008717 315 G-H----RKPVFTVSWSPNDHQLLTCG------------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG 377 (556)
Q Consensus 315 ~-h----~~~v~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 377 (556)
. + ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe
Confidence 2 1 12577899999999999886 579999999999988877765 4457889999999998888
Q ss_pred eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC------------------------eEEEEECCCC
Q 008717 378 MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA------------------------AILLLDREAN 433 (556)
Q Consensus 378 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~------------------------~I~i~d~~~~ 433 (556)
++.|.+||+.+++......... ....+.|+|+|..++..+.++ .|.+||+.++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred --CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 6899999998877654443322 112347899988665544322 4789999988
Q ss_pred ee---eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 434 FE---RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 434 ~~---~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
+. ....+...+.+++|+|+|++++++ ++.|.+||+.++ +.+..+..+... ..++| +|+|++|++++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~---~~~~~-s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHSY---YSVNV-STDGSTVWLGGALGD 302 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSCC---CEEEE-CTTSCEEEEESBSSE
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCce---eeEEE-CCCCCEEEEEcCCCc
Confidence 72 233455678899999999999988 789999999988 777777654332 23566 999999999999999
Q ss_pred EEEEEcCCCceeeeecCCC
Q 008717 511 NVPEILLSESVAAAASSLD 529 (556)
Q Consensus 511 v~iwd~~~~~~~~~~~~~~ 529 (556)
|++||+.+++.+.......
T Consensus 303 i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 303 LAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEEETTTCCEEEEEECGG
T ss_pred EEEEECcCCcEEEEEEcCC
Confidence 9999999998877665443
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.4e-21 Score=206.76 Aligned_cols=265 Identities=10% Similarity=0.056 Sum_probs=199.9
Q ss_pred eecCCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEe--ecCCeeEEEEEecCC
Q 008717 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV--KEDGQVSLKHRLSGH 316 (556)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~--~~~~~~~~~~~~~~h 316 (556)
..+..+..+.+|+.. ..+++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+. +.+..+. +
T Consensus 153 vs~~~d~~V~v~D~~-------t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~ 220 (543)
T 1nir_A 153 VTLRDAGQIALVDGD-------SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-I 220 (543)
T ss_dssp EEEGGGTEEEEEETT-------TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-C
T ss_pred EEEcCCCeEEEEECC-------CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-c
Confidence 344445566666433 2456777773333 899999999999999999999999999 554 4556666 3
Q ss_pred CCCeEEEEeCC----CCCEEEEEeC-CCcEEEEECCCCcEEEEEecC-----------CCceEEEEEecCCCeE-EEEeC
Q 008717 317 RKPVFTVSWSP----NDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT-----------GVGLISCGWFLDGGGI-FAGMT 379 (556)
Q Consensus 317 ~~~v~~l~~s~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l-~~~~~ 379 (556)
...+..++|+| ||+++++++. +++|.+||..+++++..+..+ ...+..+.++|++..+ ++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 45679999999 9999999885 899999999999999888642 2368899999977665 45567
Q ss_pred CCcEEEEECCCCe-EE--EeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe-eeeee-----cCCceEEEEE
Q 008717 380 DKSICLWDLDGRE-LE--SWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-ERWIE-----EEEVITSFSL 449 (556)
Q Consensus 380 dg~i~vwd~~~~~-~~--~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~-~~~~~-----~~~~i~~v~~ 449 (556)
++.|.+||..+.. +. .+. ....+.+++|+|+|+++++++ .+++|.+||..+++ ..... |.+....+ +
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~ 377 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V 377 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred CCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence 8999999997532 22 222 233688999999999876554 58999999999988 22222 43333333 5
Q ss_pred cCC-CCEEEEEE-cCCeEEEEEcCC-------CCcceeEEeCccCceeEEEEeecCCCCcEEEEee-------CCCcEEE
Q 008717 450 SKD-NKYLLVNL-INQEIHLWSIES-------DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-------EDSQNVP 513 (556)
Q Consensus 450 sp~-~~~l~~~~-~dg~I~lwd~~~-------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs-------~dg~v~i 513 (556)
+|+ +..++++. .|++|.+||+.+ . ++++++.+|...... +.+ +|++++|++++ .+++|.+
T Consensus 378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~-~~v~~l~~~g~~~~~--v~~-~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 378 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW-KKVAELQGQGGGSLF--IKT-HPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT-SEEEEEECSCSCCCC--EEC-CTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred CCCCccEEEeccCCCceEEEEEeCCCCCchhcC-eEEEEEEcCCCCceE--EEc-CCCCCcEEEecCCCCCcccCceEEE
Confidence 777 56666665 579999999987 5 889999998766444 445 99999999987 2789999
Q ss_pred EEcCCCcee
Q 008717 514 EILLSESVA 522 (556)
Q Consensus 514 wd~~~~~~~ 522 (556)
||+.+++..
T Consensus 454 ~d~~~~~~~ 462 (543)
T 1nir_A 454 FDLKNLDAK 462 (543)
T ss_dssp EETTCTTSC
T ss_pred EECCCCCCC
Confidence 999988765
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2e-22 Score=222.45 Aligned_cols=240 Identities=9% Similarity=0.019 Sum_probs=184.9
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----cEEEEEeecCCeeEEEEEecCCC----------------------CCeEEE
Q 008717 272 SDEVWFLQFSHDGKYLASSSK-DQ-----SAIIWEVKEDGQVSLKHRLSGHR----------------------KPVFTV 323 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~-dg-----~i~iwd~~~~~~~~~~~~~~~h~----------------------~~v~~l 323 (556)
...|.+++|||||++|++++. |+ .|++||+.++.. ........+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-EEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-eEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999999999998 88 899999987532 2222222222 237899
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCc--EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccC
Q 008717 324 SWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (556)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 401 (556)
+|||||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|++++. +.|++||+.++....+...+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence 99999999999887 899999999882 34456667788999999999999999875 689999999877766554433
Q ss_pred CC----------------eeEEEEccCCCEEEEEeCCC---------------------------------eEEEEECCC
Q 008717 402 LR----------------ISDMAITDDGKRIISICREA---------------------------------AILLLDREA 432 (556)
Q Consensus 402 ~~----------------v~~v~~s~~g~~l~~~~~d~---------------------------------~I~i~d~~~ 432 (556)
.. +.+++|+|||++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 22 47899999999999987765 899999988
Q ss_pred -Ce-eeee---ecCCceEEEEEcCCCCEEEEEEc-----CCeEEEEEcCCCCcceeEEeCccCc-e-eEEEEeecCCCCc
Q 008717 433 -NF-ERWI---EEEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDPKLVSRYKGHKRA-R-FVIRSCFGGFEQA 500 (556)
Q Consensus 433 -~~-~~~~---~~~~~i~~v~~sp~~~~l~~~~~-----dg~I~lwd~~~~~~~~~~~~~~~~~-~-~~i~~~~~s~~~~ 500 (556)
++ .... .+...+.+++| |||++|++++. +..|++||+.++ +....+..+... + ......| +|||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~-spdg~ 349 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRF-LDDGS 349 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEE-CTTSC
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEE-CCCCe
Confidence 77 2222 36678999999 99999998764 467999999988 666666555431 1 0012455 99999
Q ss_pred EEEEeeCCCcEEEEEcC
Q 008717 501 FIASGSEDSQNVPEILL 517 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd~~ 517 (556)
++++++.||.+.+|.+.
T Consensus 350 ~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 350 ILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEECTTSSCEEEEEC
T ss_pred EEEEecCCCccEEEEEc
Confidence 99999999988888665
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=6.7e-21 Score=190.25 Aligned_cols=246 Identities=10% Similarity=0.056 Sum_probs=191.4
Q ss_pred cCCcEEEEEEccCCCEEEEEeC-------CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSK-------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIR 342 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~-------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~ 342 (556)
....+..++|+|+|+++++++. ++.|.+||..++. ....+.. ...+..++|+|++++++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE---VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC---EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe---EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4456889999999999888774 5689999998763 3333332 3447789999999966555 4578999
Q ss_pred EEECCCCcEEEEEecCCC---------ceEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 343 RWDVNSGECLHVYEKTGV---------GLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
+||..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||..+.+...........+.+++|+|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 999999998888876432 268899999999888776 478899999998777665553343689999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-eeeee-----cCCceEEEEEcCCCCEEEEEEcC-CeEEEEEcCCCCcceeEEeCcc
Q 008717 412 DGKRIISICREAAILLLDREANF-ERWIE-----EEEVITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~~~-~~~~~-----~~~~i~~v~~sp~~~~l~~~~~d-g~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+|+++++++.++.|.+||..+++ ..... +...+.+++|+|+|+++++++.+ +.|.+||+.++ +.+..+....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 273 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE 273 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC
Confidence 99999999999999999999987 22222 35568889999999988777654 89999999988 7777776544
Q ss_pred CceeEEEEeecCCCCcEEEEee-CCCcEEEEEcCCCceeeeec
Q 008717 485 RARFVIRSCFGGFEQAFIASGS-EDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~ 526 (556)
. ..+.| +|+|++++.++ .++.|.+||..+++......
T Consensus 274 ~----~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 274 S----LAVLF-NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp C----CCEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred C----ceEEE-CCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 3 22555 89999665555 69999999999988766554
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=2.7e-21 Score=204.61 Aligned_cols=240 Identities=10% Similarity=0.062 Sum_probs=189.2
Q ss_pred EccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC--CCCcEEEEEec
Q 008717 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV--NSGECLHVYEK 357 (556)
Q Consensus 280 ~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~ 357 (556)
|+|++.++++++.|++|.+||..++ +.+.++..+.. +..++|+|||++|++++.|++|.+||+ .+++++..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 7889999999999999999999876 44566663333 889999999999999999999999999 8899888887
Q ss_pred CCCceEEEEEec----CCCeEEEEeC-CCcEEEEECCCCeEEEeecc-----------cCCCeeEEEEccCCCE-EEEEe
Q 008717 358 TGVGLISCGWFL----DGGGIFAGMT-DKSICLWDLDGRELESWKGQ-----------KTLRISDMAITDDGKR-IISIC 420 (556)
Q Consensus 358 ~~~~v~~i~~~~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~-l~~~~ 420 (556)
+...+..++|+| ||+++++++. +++|.+||..+.+....... ....+..+.++|++.. +++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 455679999999 9999999884 89999999987655433321 2236899999998765 56667
Q ss_pred CCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeC----ccCceeEEEE
Q 008717 421 REAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG----HKRARFVIRS 492 (556)
Q Consensus 421 ~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~----~~~~~~~i~~ 492 (556)
.++.|.+||..+.. ...+.+...+.++.|+|+|+++++++ .+++|.+||+.++ +++..+.. |.....
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~---- 374 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGA---- 374 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCE----
T ss_pred CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCc----
Confidence 88999999998865 23455677788999999999877665 5889999999998 88888874 443221
Q ss_pred eecCCC-CcEEEEee-CCCcEEEEEcCC-------CceeeeecCCC
Q 008717 493 CFGGFE-QAFIASGS-EDSQNVPEILLS-------ESVAAAASSLD 529 (556)
Q Consensus 493 ~~~s~~-~~~l~sgs-~dg~v~iwd~~~-------~~~~~~~~~~~ 529 (556)
.|.+|+ +.++++++ .|++|.+||+.+ .+.+.....+.
T Consensus 375 ~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 375 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred ccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 123676 66677765 689999999988 66666666554
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.2e-20 Score=188.35 Aligned_cols=252 Identities=12% Similarity=0.118 Sum_probs=178.1
Q ss_pred cccCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEE
Q 008717 269 EAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRW 344 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw 344 (556)
..+...+..++|+|||+ |++++. ++.|.+|++.+ +....+..+..+...+..++|+|||++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 34567788899999999 555543 68999999975 34445555566777889999999999998888 67899999
Q ss_pred ECC-CCc--EEEEEecC---------CCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeEEEe---ecccCCCeeEEE
Q 008717 345 DVN-SGE--CLHVYEKT---------GVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESW---KGQKTLRISDMA 408 (556)
Q Consensus 345 d~~-~~~--~~~~~~~~---------~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~---~~~~~~~v~~v~ 408 (556)
++. ++. .+..+... ...+.+++|+|+|+.+++...++.|.+||+. ++.+... .......+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 995 333 23333221 1247889999999966666678899999998 4444322 222233688999
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCC--Ceee----eeecC------CceEEEEEcCCCCEEEE-EEcCCeEEEEEcCCCC
Q 008717 409 ITDDGKRIIS-ICREAAILLLDREA--NFER----WIEEE------EVITSFSLSKDNKYLLV-NLINQEIHLWSIESDP 474 (556)
Q Consensus 409 ~s~~g~~l~~-~~~d~~I~i~d~~~--~~~~----~~~~~------~~i~~v~~sp~~~~l~~-~~~dg~I~lwd~~~~~ 474 (556)
|+|||+++++ ...++.|.+|++.. +... ..... ..+..++|+|||++|++ +..++.|.+|++....
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9999996665 45688999999875 4311 11111 45888999999998855 4558999999997321
Q ss_pred --cceeEEeCccCceeEEEEeecCCCCcEEEEeeCC-CcEEEE--EcCCCceeeee
Q 008717 475 --KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-SQNVPE--ILLSESVAAAA 525 (556)
Q Consensus 475 --~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d-g~v~iw--d~~~~~~~~~~ 525 (556)
+.+..+..+...... ++| +|||++|++++.+ +.|.+| |..++++....
T Consensus 274 ~~~~~~~~~~~~~~~~~--~~~-spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRD--FDL-DPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp CEEEEEEEECSSSCCCE--EEE-CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred cEEEeEEEecCCCCcCe--EEE-CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 344555554443333 566 9999988888764 899999 55567765443
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.5e-21 Score=187.59 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=173.9
Q ss_pred EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecC-CCceEEEEE
Q 008717 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVYEKT-GVGLISCGW 367 (556)
Q Consensus 290 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~i~~ 367 (556)
++.|+.|++||+.++. . ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 18 ~~~~~~i~~~d~~~~~---~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRK---M-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTTE---E-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCCc---e-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 4678999999998652 2 24456888999999999999999987 78999999999 8877666555 367889999
Q ss_pred ecCCCeEEEEeC--CC--cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE-EEeCCCeEEEEECC--CCe-eeeee
Q 008717 368 FLDGGGIFAGMT--DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SICREAAILLLDRE--ANF-ERWIE 439 (556)
Q Consensus 368 ~~~~~~l~~~~~--dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~I~i~d~~--~~~-~~~~~ 439 (556)
+|+++++++++. ++ .|..|++.++....+.... .+..++|+|+++.++ +++.++.+.+|++. ++. ..+..
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999983 33 4555555666655544443 589999999999877 77789999999854 444 55556
Q ss_pred cCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC----------
Q 008717 440 EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---------- 508 (556)
Q Consensus 440 ~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d---------- 508 (556)
+...+.+++|+|+|++|++++ .++.+++|++......+..+..|...+. .+.| +|+|++|++++.+
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~-s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW--FPHP-SPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE--EEEE-CTTSSEEEEEEEETTCCSCCSSE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC--CeEE-CCCCCEEEEEEcCCCCCcccccC
Confidence 778899999999999888776 4889999998632256677777765433 3555 9999999988876
Q ss_pred -CcEEEEEcCCCceeee
Q 008717 509 -SQNVPEILLSESVAAA 524 (556)
Q Consensus 509 -g~v~iwd~~~~~~~~~ 524 (556)
+.|++||+.+++....
T Consensus 248 ~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EEEEEEEETTSCSCEEE
T ss_pred ceEEEEEecCCCCceee
Confidence 5699999998876443
No 139
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=4.1e-21 Score=191.39 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=177.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEeCCCCCEEEE-EeCCCcEEEEECCCCcEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLT-CGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~ 354 (556)
.+++++++.++++++.+++|.+||..++ +....+..+. ..+..++|+|++++++. +..++.|.+||+.+++.+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4567889999999999999999999865 3444444332 25789999999987654 45688999999999988877
Q ss_pred EecCC------CceEEEEEecCCCeEEEEeCC------------CcEEEEECCCCeE---EEeecccCCCeeEEEEccCC
Q 008717 355 YEKTG------VGLISCGWFLDGGGIFAGMTD------------KSICLWDLDGREL---ESWKGQKTLRISDMAITDDG 413 (556)
Q Consensus 355 ~~~~~------~~v~~i~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v~~v~~s~~g 413 (556)
+.... ..+..++|+|||+++++++.+ +.|.+||+.++.. ........ .+.+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-cccceeECCCC
Confidence 76432 226789999999999998865 8999999976322 12222222 68899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCe-eeeeecC---------------------------------------------------
Q 008717 414 KRIISICREAAILLLDREANF-ERWIEEE--------------------------------------------------- 441 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~-~~~~~~~--------------------------------------------------- 441 (556)
+ +++++. .|.+||..+++ .......
T Consensus 160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 555543 49999998876 2221111
Q ss_pred ------------------CceEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEE
Q 008717 442 ------------------EVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (556)
Q Consensus 442 ------------------~~i~~v~~sp-~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 502 (556)
..+.+++|+| ++++++++ ++.|.+||+.++ +.+..+...... . .+.| +|+|++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~-~--~~~~-s~dg~~l 309 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANLDHTY-Y--CVAF-DKKGDKL 309 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEECSSCC-C--EEEE-CSSSSCE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcCCCCc-c--ceEE-CCCCCEE
Confidence 1345677889 99999888 889999999988 777777644332 2 3566 9999998
Q ss_pred EEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 503 ASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 503 ~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
++++.++.|++||+.+++.+......
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEecCCCeEEEEeccccceeeeeecC
Confidence 88888999999999998887665544
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=2.4e-21 Score=207.85 Aligned_cols=237 Identities=14% Similarity=0.070 Sum_probs=178.7
Q ss_pred cCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEeCCCCCEEEEEeC---CCcEEEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQ---EEAIRRWD 345 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~i~iwd 345 (556)
+..+|++++|+|||++||+++. ||++.||++.++ . ...+..|. ..+..+.|+|| +.+++++. +....+|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~---~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-E---TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-E---EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-C---cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999999999887 999999998643 2 24455555 68999999999 77777765 45556655
Q ss_pred CCC---CcEEEEEecCCCceEEEEEecCCCe-EEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 346 VNS---GECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 346 ~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
+.. +... .+.... .+...+|+||++. +++++.++.+.+||+.+++...+...+. .+++|+|||+++++++.
T Consensus 95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEE
T ss_pred EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEE
Confidence 432 3322 333222 3446789998864 3444455556699999888777665542 89999999999998887
Q ss_pred C----CeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCC--eEEEEEcCCCCcceeEEeCccCceeEE----
Q 008717 422 E----AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESDPKLVSRYKGHKRARFVI---- 490 (556)
Q Consensus 422 d----~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg--~I~lwd~~~~~~~~~~~~~~~~~~~~i---- 490 (556)
+ +.|++||+.++. ..+..+...+.+++|||||++|+++..++ .|++||+.++ +.. .+.+|...+..+
T Consensus 170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CEE-ECCCSCSHHHHHCCSE
T ss_pred cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cEE-EccCCCcChhhhhhcc
Confidence 7 789999999888 66677888899999999999999888888 8999999987 555 666766543321
Q ss_pred --EEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 491 --RSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 491 --~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
..+| +|||.++++++.||++++|++ ++..
T Consensus 248 ~~~~~~-spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 248 ITWLGY-LPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEEEE-CTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred ccceeE-cCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 1115 999999999999999999999 5443
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.9e-20 Score=185.44 Aligned_cols=233 Identities=8% Similarity=0.045 Sum_probs=174.2
Q ss_pred EEccCCCE-EEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEEECCCCcE-EEEE
Q 008717 279 QFSHDGKY-LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGEC-LHVY 355 (556)
Q Consensus 279 ~~sp~g~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~ 355 (556)
.|.+++.+ +++++.++.|.+||..++. ....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 45565554 6778889999999998763 334444556666 9999999997777766 88999999999987 7777
Q ss_pred ecCCCceEEEEEecCCCeEEEEeCCC---cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE-eCCCe-EEEEEC
Q 008717 356 EKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI-CREAA-ILLLDR 430 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~-I~i~d~ 430 (556)
..+..+..+++|+|++++++++..++ .|.+||+++++......... .+.+++|+|+|++++++ ..++. |.+|++
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 76666665599999999999655553 89999998877655544433 68999999999865554 55578 999998
Q ss_pred CCCe------eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcc---eeEEeCccCceeEEEEeecCCCCc
Q 008717 431 EANF------ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 431 ~~~~------~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~ 500 (556)
.... .........+..++|+|+|+++++++ .++.|.+||+.++ +. +..+..+... ..+.| +|||+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~---~~~~~-spdg~ 233 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNLP---GTIVV-SRDGS 233 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSCC---CCEEE-CTTSS
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCCC---ceEEE-CCCCC
Confidence 7543 12223456689999999999776655 5889999999987 66 6677655332 23556 99999
Q ss_pred EEEEee-CCCcEEEEEcCCCce
Q 008717 501 FIASGS-EDSQNVPEILLSESV 521 (556)
Q Consensus 501 ~l~sgs-~dg~v~iwd~~~~~~ 521 (556)
+|+.++ .++.|.+||+.++++
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCEEEEEECCCCce
Confidence 776554 578899999998877
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=3.6e-21 Score=212.42 Aligned_cols=238 Identities=12% Similarity=0.073 Sum_probs=180.3
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (556)
.|.+++|||||++|++++. +.|++||+.++... ....+..|...+.+++|||||++|++++. +.|++||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-AVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-SCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-eEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 3889999999999999886 89999999865100 12356678888999999999999999874 699999999887765
Q ss_pred EEecCCCc----------------eEEEEEecCCCeEEEEeCCC---------------------------------cEE
Q 008717 354 VYEKTGVG----------------LISCGWFLDGGGIFAGMTDK---------------------------------SIC 384 (556)
Q Consensus 354 ~~~~~~~~----------------v~~i~~~~~~~~l~~~~~dg---------------------------------~i~ 384 (556)
....+... +.+++|+|||++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 54443332 46799999999999988765 789
Q ss_pred EEECCC-CeEEEeec--ccCCCeeEEEEccCCCEEEEEeC-----CCeEEEEECCCCe-eeee-ecCC----ceEEEEEc
Q 008717 385 LWDLDG-RELESWKG--QKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF-ERWI-EEEE----VITSFSLS 450 (556)
Q Consensus 385 vwd~~~-~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~-----d~~I~i~d~~~~~-~~~~-~~~~----~i~~v~~s 450 (556)
+||+.+ ++...... .+...+..++| |||++|++++. +..|++||+.+++ .... .+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77655542 24447899999 99999987764 5679999999887 3222 2322 45689999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE-EeeCCC--cEEEEEcCC
Q 008717 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDS--QNVPEILLS 518 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-sgs~dg--~v~iwd~~~ 518 (556)
|||+++++++.||.++||.+..... ...+..|...+.. +..++|+|+.|+ +++.++ .+++|++..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~--~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE--LLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE--EEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe--EeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999999999888888763325 7777777665433 432399998775 455555 899998763
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=4.5e-21 Score=211.00 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=178.1
Q ss_pred ceeEEecccCC---cEEEEEEccCCCEEEEEeCC---------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC
Q 008717 263 QTLQILEAHSD---EVWFLQFSHDGKYLASSSKD---------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330 (556)
Q Consensus 263 ~~~~~l~~h~~---~V~~~~~sp~g~~las~s~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 330 (556)
+....+.+|.. .|.+++|||||++|++++.+ +.+.+||+.++.. ..+.....|...+..++|||||+
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC
Confidence 44556666665 49999999999999999764 7888999986532 22333344555689999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEecCCCce------------------EEEEEecCCCeEEEEeCCC-----------
Q 008717 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL------------------ISCGWFLDGGGIFAGMTDK----------- 381 (556)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~i~~~~~~~~l~~~~~dg----------- 381 (556)
.|++++. +.|++||+.+++.......+...+ .+++|+|||+.|++++.|+
T Consensus 127 ~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~ 205 (723)
T 1xfd_A 127 QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (723)
T ss_dssp CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeecc
Confidence 9999886 799999999988776665443323 7899999999999987543
Q ss_pred -----------------------cEEEEECCCCeE-EEeecc-----cCCCeeEEEEccCCCEEEEEeC----CCeEEEE
Q 008717 382 -----------------------SICLWDLDGREL-ESWKGQ-----KTLRISDMAITDDGKRIISICR----EAAILLL 428 (556)
Q Consensus 382 -----------------------~i~vwd~~~~~~-~~~~~~-----~~~~v~~v~~s~~g~~l~~~~~----d~~I~i~ 428 (556)
.|++||+.++.. ..+..+ +...+..++|+|||+++++.+. +..|++|
T Consensus 206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence 799999987663 444332 1347899999999998877653 3579999
Q ss_pred ECCCCe-eeee--ecCCce----EEEEEcCCCCEEEEE--EcCC------eEEEEEc-CCCCc--ceeEEeCccCceeEE
Q 008717 429 DREANF-ERWI--EEEEVI----TSFSLSKDNKYLLVN--LINQ------EIHLWSI-ESDPK--LVSRYKGHKRARFVI 490 (556)
Q Consensus 429 d~~~~~-~~~~--~~~~~i----~~v~~sp~~~~l~~~--~~dg------~I~lwd~-~~~~~--~~~~~~~~~~~~~~i 490 (556)
|+.+++ .... .+...+ ..++|+|||+.|+.. ..++ .|++||+ .++ . ....+..+...+..
T Consensus 286 d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~- 363 (723)
T 1xfd_A 286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-SNDNIQSITSGDWDVTK- 363 (723)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-SSCCCCBSCCSSSCEEE-
T ss_pred eCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-CccceeEeecCCeEEEe-
Confidence 999887 2222 233443 378999999977754 4566 4777773 343 3 14455433333221
Q ss_pred EEeecCCCCcEEEEeeCC---CcEEEEEcCC
Q 008717 491 RSCFGGFEQAFIASGSED---SQNVPEILLS 518 (556)
Q Consensus 491 ~~~~~s~~~~~l~sgs~d---g~v~iwd~~~ 518 (556)
...| +|||+.|+..+.+ +.+++|++..
T Consensus 364 ~~~~-spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 364 ILAY-DEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEE-ETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeEE-cCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 1345 9999999766555 7899998864
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.9e-19 Score=180.89 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=180.5
Q ss_pred cCCcEEEEEEccCCCEEEEEeCC----CcEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKD----QSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRW 344 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw 344 (556)
+...+..++|+|||++|++++.+ +.|.+|++... +....+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788889999999999998875 79999999864 555556666656667778888 888887776 47899999
Q ss_pred ECCCCcEEEE----Ee--c--------CCCceEEEEEecCCCeEEEEe-CCCcEEEEECCCCe-------E------EEe
Q 008717 345 DVNSGECLHV----YE--K--------TGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRE-------L------ESW 396 (556)
Q Consensus 345 d~~~~~~~~~----~~--~--------~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~-------~------~~~ 396 (556)
++.+...+.. .. + +...+.+++|+|+|+++++++ .++.|.+|+++... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 11 1 122357899999999776665 47899999986322 2 122
Q ss_pred ecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCeee-e--e----ecCCceEEEEEcCCCCEEEEEEcC--CeEE
Q 008717 397 KGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFER-W--I----EEEEVITSFSLSKDNKYLLVNLIN--QEIH 466 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~~~-~--~----~~~~~i~~v~~sp~~~~l~~~~~d--g~I~ 466 (556)
.......+..++|+|+|+++++++ .++.|.+||+.++... . . .+...+..++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233334688999999999887777 6899999999876521 1 1 122446799999999999777665 8899
Q ss_pred EEEcC--CCCc--ceeEEeCccCceeEEEEeecCCCCcEEEEee-CCCcEEEEEc--CCCceeeeecCCCcccccceeeE
Q 008717 467 LWSIE--SDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQNVPEIL--LSESVAAAASSLDNFVSSYFCLH 539 (556)
Q Consensus 467 lwd~~--~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs-~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~ 539 (556)
+|++. ++ + .+..+.. .... ..+.| +|||++|++++ .++.|.+|++ .++++...... ..+....|+.
T Consensus 286 v~~~~~~~g-~~~~~~~~~~-g~~~--~~~~~-spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~ 358 (361)
T 3scy_A 286 IFKVDETNG-TLTKVGYQLT-GIHP--RNFII-TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLK 358 (361)
T ss_dssp EEEECTTTC-CEEEEEEEEC-SSCC--CEEEE-CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEE
T ss_pred EEEEcCCCC-cEEEeeEecC-CCCC--ceEEE-CCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEE
Confidence 99996 33 3 3344443 2222 23566 99999888887 6789999654 56766544322 2233455553
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=7.9e-20 Score=181.44 Aligned_cols=227 Identities=12% Similarity=0.158 Sum_probs=164.3
Q ss_pred EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-CcEEEEECC--CCcE--EEEEecCCC
Q 008717 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-EAIRRWDVN--SGEC--LHVYEKTGV 360 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~~~~~~~~ 360 (556)
.+++++.|+.|++|++...+.......+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 3444578999999999744444444443 477789999999999999998886 899999997 5553 34454434
Q ss_pred ceEEEEEecCCCeEEEEeC-CCcEEEEECC---CCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC-Ce
Q 008717 361 GLISCGWFLDGGGIFAGMT-DKSICLWDLD---GRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA-NF 434 (556)
Q Consensus 361 ~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~-~~ 434 (556)
.+..++|+|+++++++++. ++.|.+||+. ............ .+.+++|+|+|+++++++ .++.|.+||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877765 7889999993 333333333333 689999999999888877 899999999987 54
Q ss_pred e------eeee-cCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCC--CCcc--eeEEe----CccCceeEEEEeecCCC
Q 008717 435 E------RWIE-EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIES--DPKL--VSRYK----GHKRARFVIRSCFGGFE 498 (556)
Q Consensus 435 ~------~~~~-~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~--~~~~--~~~~~----~~~~~~~~i~~~~~s~~ 498 (556)
. .... ....+..++|+|+++++++++ .++.|.+||+.. + +. ...+. ++........++| +|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~-s~d 241 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-NIECVQTLDMMPENFSDTRWAADIHI-TPD 241 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-CCEEEEEEECSCTTCCSCCCEEEEEE-CTT
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-cEEEEeeccccCccccccCCccceEE-CCC
Confidence 2 2222 345788999999999876665 789999999954 3 22 22222 1122222334566 999
Q ss_pred CcEEEE-eeCCCcEEEEEcC
Q 008717 499 QAFIAS-GSEDSQNVPEILL 517 (556)
Q Consensus 499 ~~~l~s-gs~dg~v~iwd~~ 517 (556)
|++|++ +..++.|++|++.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEecCCCEEEEEEEc
Confidence 988774 4579999999998
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=9e-21 Score=208.11 Aligned_cols=259 Identities=11% Similarity=0.071 Sum_probs=187.5
Q ss_pred CCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-----CCeeEEEEEecCCCCC-------
Q 008717 252 DHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-----DGQVSLKHRLSGHRKP------- 319 (556)
Q Consensus 252 d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~h~~~------- 319 (556)
+.....++........+..+...+.+++|||||++||++ .|+.|++|++.+ +.. ......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~---~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA---IAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC---EESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc---EEeccCCCCCeEcccch
Confidence 333334444444555666677889999999999999995 689999999986 532 2222233332
Q ss_pred -------eEEEEeCCCCCEEEEEe---------------------------------CCCcEEEEECCCCcEEEEEe--c
Q 008717 320 -------VFTVSWSPNDHQLLTCG---------------------------------QEEAIRRWDVNSGECLHVYE--K 357 (556)
Q Consensus 320 -------v~~l~~s~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~--~ 357 (556)
+.++.|||||++|++++ .+..|++||+.+++...... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 48899999999999987 34679999999888655442 3
Q ss_pred CCCceEEEEEecCCCeEEEEeCCC-----cEEEEECCCC-eEEEeeccc-CC---CeeEEEEcc--CCCEEEEEeCCCeE
Q 008717 358 TGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGR-ELESWKGQK-TL---RISDMAITD--DGKRIISICREAAI 425 (556)
Q Consensus 358 ~~~~v~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~~-~~~~~~~~~-~~---~v~~v~~s~--~g~~l~~~~~d~~I 425 (556)
+...+.+++|+|||+.+++++.++ .|++||+.++ ......... .. .+.+++|+| ||+++++++.|+.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 567789999999999999987765 8999999887 554443222 11 246789999 99999999999998
Q ss_pred EEEECC-CCe--eeeeecCCceEE-EEEcCCCCEEEEEEcC-C----eEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 426 LLLDRE-ANF--ERWIEEEEVITS-FSLSKDNKYLLVNLIN-Q----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 426 ~i~d~~-~~~--~~~~~~~~~i~~-v~~sp~~~~l~~~~~d-g----~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
++|++. ++. ..+..+...+.+ ++|+|+|+.|++++.+ + .|..||+.++ + ...+. +...+. .+.| +
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~-~~~~~~--~~~~-s 409 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-K-TKDLT-PESGMH--RTQL-S 409 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-C-CEESC-CSSSEE--EEEE-C
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-C-ceecc-CCCceE--EEEE-C
Confidence 888775 333 444556666776 7999999988776654 3 5777777765 3 34443 444443 3566 9
Q ss_pred CCCcEEEEeeCC----CcEEEEEcCCCc
Q 008717 497 FEQAFIASGSED----SQNVPEILLSES 520 (556)
Q Consensus 497 ~~~~~l~sgs~d----g~v~iwd~~~~~ 520 (556)
|||++|+.+..+ +.|++||+.+++
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999988776443 569999998876
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.6e-21 Score=214.53 Aligned_cols=239 Identities=10% Similarity=0.066 Sum_probs=176.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC---CeEEEEeCCCCCEEEEEeCC---------CcE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQE---------EAI 341 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~i 341 (556)
.+.+++|+|||+++++ +.||+|++||+.++. ....+..|.. .|.+++|||||++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 3667899999998776 789999999999763 3345555654 49999999999999999774 678
Q ss_pred EEEECCCCcEEEEEec---CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCC---------------
Q 008717 342 RRWDVNSGECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR--------------- 403 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------- 403 (556)
.+||+.+++. ..+.. +...+..++|+|||+.|++++. +.|++||+.++....+...+...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 8999999876 33432 3334788999999999999887 79999999877665555433222
Q ss_pred ---eeEEEEccCCCEEEEEeCCC----------------------------------eEEEEECCCCe--eeeeec----
Q 008717 404 ---ISDMAITDDGKRIISICREA----------------------------------AILLLDREANF--ERWIEE---- 440 (556)
Q Consensus 404 ---v~~v~~s~~g~~l~~~~~d~----------------------------------~I~i~d~~~~~--~~~~~~---- 440 (556)
+.+++|+|||+.|++++.++ .|++||+.++. ..+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 37899999999999887553 79999998876 333322
Q ss_pred --CCceEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCCcceeEEeCc-cCceeE--EEEeecCCCCcEEEE--eeCCC
Q 008717 441 --EEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDPKLVSRYKGH-KRARFV--IRSCFGGFEQAFIAS--GSEDS 509 (556)
Q Consensus 441 --~~~i~~v~~sp~~~~l~~~~~d----g~I~lwd~~~~~~~~~~~~~~-~~~~~~--i~~~~~s~~~~~l~s--gs~dg 509 (556)
...+.+++|||||+++++.+.. ..|++||+.++ +....+..+ ...+.. ....| +|||+.|+. +..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEEEEECCS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceE-cCCCCeEEEEEecccC
Confidence 5678999999999998777543 57999999988 665555433 222110 12455 999997765 45667
Q ss_pred ------cEEEEE-cCCCc
Q 008717 510 ------QNVPEI-LLSES 520 (556)
Q Consensus 510 ------~v~iwd-~~~~~ 520 (556)
.|++|| ..++.
T Consensus 330 ~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp SSSCEEEEEEECSSCCSS
T ss_pred CCcceeEEEEEeccCCCC
Confidence 577788 44544
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.2e-19 Score=181.23 Aligned_cols=237 Identities=11% Similarity=0.080 Sum_probs=178.9
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEE-EeCCCcEEEEEeecCCeeEEEEEecCCCC---------CeEEEEeCCCCCEE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLSGHRK---------PVFTVSWSPNDHQL 332 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~~~~~l 332 (556)
+.+..+.. ...+..++|+|+|++++. +..++.|.+||..++. ....+..+.. .+.+++|+|+++++
T Consensus 80 ~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 155 (353)
T 3vgz_A 80 EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTV 155 (353)
T ss_dssp CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence 34444443 345788999999996655 4557999999998763 3344444332 27889999999988
Q ss_pred EEEe--CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc----cCCCeeE
Q 008717 333 LTCG--QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ----KTLRISD 406 (556)
Q Consensus 333 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~ 406 (556)
++++ .++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++....... +...+..
T Consensus 156 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 3vgz_A 156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN 235 (353)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE
T ss_pred EEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce
Confidence 8776 478899999999999888875666688899999999999999999999999988766544332 3336788
Q ss_pred EEEccCCCEEEEEeC-CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCc
Q 008717 407 MAITDDGKRIISICR-EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 407 v~~s~~g~~l~~~~~-d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
++|+|+|+++++++. ++.|.+||..+++ ........ ...++|+|+|++++++. .++.|.+||+.++ +.+..+...
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~ 313 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP 313 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC
Confidence 999999998776665 4899999999887 33333223 36799999999776666 6899999999988 777777655
Q ss_pred cCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 484 KRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
... ..+.| +|+|++|+.+..++
T Consensus 314 ~~~---~~~~~-s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THP---NSLAL-SADGKTLYVSVKQK 335 (353)
T ss_dssp SEE---EEEEE-CTTSCEEEEEEECC
T ss_pred CCC---CeEEE-cCCCCEEEEEEccc
Confidence 432 34566 99999877776653
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=1.9e-20 Score=192.80 Aligned_cols=201 Identities=10% Similarity=0.063 Sum_probs=153.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCe--------eEEE----EEecCCCCCeEEEEeCCCCCEEE----EE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--------VSLK----HRLSGHRKPVFTVSWSPNDHQLL----TC 335 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~--------~~~~----~~~~~h~~~v~~l~~s~~~~~l~----s~ 335 (556)
...+..+++++++.++++++.|+ ++||+...... .... .....|...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678999999999999999887 89987642100 0000 01123567899999999999999 78
Q ss_pred eCCCcEEEEECCCC--------c---EEEEEecCCCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeecccCCC
Q 008717 336 GQEEAIRRWDVNSG--------E---CLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLR 403 (556)
Q Consensus 336 ~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 403 (556)
+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++........+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998654 2 24556678899999999997 889999999999999999876544333344558
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeec-------CCceEEEEEcCCCCEEEEEE-cCC------eEEEE
Q 008717 404 ISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE-------EEVITSFSLSKDNKYLLVNL-INQ------EIHLW 468 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~-------~~~i~~v~~sp~~~~l~~~~-~dg------~I~lw 468 (556)
|.+++|+|+|++|++|+.||.|++||.+... .....+ ...+.+++|++++.++++.+ .+| .+++|
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 9999999999999999999999999998332 222222 23799999999988876543 333 38999
Q ss_pred EcCCC
Q 008717 469 SIESD 473 (556)
Q Consensus 469 d~~~~ 473 (556)
+++..
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99764
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=4.1e-20 Score=202.83 Aligned_cols=240 Identities=8% Similarity=0.049 Sum_probs=180.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC----
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS---- 348 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---- 348 (556)
..|.+++|||| ..++.+ .++.|++||+.++ . . ..+..+...+.+++|||||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~-~--~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR-K--V-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT-E--E-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC-c--e-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 666655 3599999999865 2 2 3345567788999999999999985 679999999998
Q ss_pred -CcEEEEEecCCCc--------------eEEEEEecCCCeEEEEe---------------------------------CC
Q 008717 349 -GECLHVYEKTGVG--------------LISCGWFLDGGGIFAGM---------------------------------TD 380 (556)
Q Consensus 349 -~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~---------------------------------~d 380 (556)
++.......+... +.++.|+|||++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 8766544433332 47899999999999987 44
Q ss_pred CcEEEEECCCCeEEEeec--ccCCCeeEEEEccCCCEEEEEeCCC-----eEEEEECCCC-e-eeee--ecCC---ceEE
Q 008717 381 KSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIISICREA-----AILLLDREAN-F-ERWI--EEEE---VITS 446 (556)
Q Consensus 381 g~i~vwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~d~-----~I~i~d~~~~-~-~~~~--~~~~---~i~~ 446 (556)
..|++||+.++....... .+...+.+++|+|||+.+++++.++ .|++||..++ . .... .+.. .+.+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 679999999877655542 2334689999999999999887775 8999999998 4 2222 2222 2467
Q ss_pred EEEcC--CCCEEEEEEcCCeEEEEEcC-CCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC-CC----cEEEEEcCC
Q 008717 447 FSLSK--DNKYLLVNLINQEIHLWSIE-SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DS----QNVPEILLS 518 (556)
Q Consensus 447 v~~sp--~~~~l~~~~~dg~I~lwd~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~-dg----~v~iwd~~~ 518 (556)
++|+| ||++++++..|+.++||++. ++ ..+..+..+...+..+ ..| +|+|+.|+.++. ++ .|+.||+.+
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~~v~~~-~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTG-RLIRQVTKGEWEVTNF-AGF-DPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTS-CEEEECCCSSSCEEEE-EEE-CTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCC-CEEEecCCCCeEEEee-eEE-cCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 89999 99999999999999999886 44 6677777776653321 345 999987765554 44 677778877
Q ss_pred Ccee
Q 008717 519 ESVA 522 (556)
Q Consensus 519 ~~~~ 522 (556)
+...
T Consensus 392 ~~~~ 395 (706)
T 2z3z_A 392 GKTK 395 (706)
T ss_dssp CCCE
T ss_pred CCce
Confidence 6643
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=5.6e-20 Score=210.44 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=197.3
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....+.+|.+.+.++.|+++ .++++++.|+.+.||.+...+. ....+..|. .+...+|+|||++|+++ .++.|++
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEE
Confidence 34556899999999999998 6667788889999999875332 234455554 46778999999999987 4889999
Q ss_pred EECCCCcEEEEEec-----------CCCceEEEEEe-cCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 344 WDVNSGECLHVYEK-----------TGVGLISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 344 wd~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
||+...+ +..+.. +...+.+++|+ |||+.+++++ ++.|.+|++.++....+..+....+..++|+
T Consensus 270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence 9995444 335443 23468899999 9999999988 7899999998877666544433278999999
Q ss_pred CCCEEEEEeCCCeEE-EEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeE
Q 008717 412 DGKRIISICREAAIL-LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~-i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~ 489 (556)
||+.+++++.++.+. +||+.++. ..+..+...+..++|+|||++|++++.++.|++||+.++ +....+.+|...+..
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITD 425 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccc
Confidence 999999999888899 99998877 444467788999999999999999999999999999988 777777688776544
Q ss_pred EEEeecCCCCcEEEEeeCCC----------cEEEEEcCCCcee
Q 008717 490 IRSCFGGFEQAFIASGSEDS----------QNVPEILLSESVA 522 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~dg----------~v~iwd~~~~~~~ 522 (556)
+.| +|||++|++++.++ .|++||+.+++..
T Consensus 426 --~~~-SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 426 --FTI-SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp --EEE-CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred --eEE-CCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 556 99999999887754 8999999987743
No 152
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=4.1e-19 Score=178.79 Aligned_cols=245 Identities=9% Similarity=0.045 Sum_probs=170.6
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCE--EEEEe------------
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ--LLTCG------------ 336 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~------------ 336 (556)
+...+..++|+|+|++|++++.+ .|.+|++...+..........+ +.+.+++|+|||++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34468889999999999998887 9999999722333222222212 23566899999994 45553
Q ss_pred -CCCcEEEEECC-CCcEEEEEe----cCCCceEEEEEecCCCeEEEEeC-CCcEEEEECC-CCeEEEe---ec-ccCCCe
Q 008717 337 -QEEAIRRWDVN-SGECLHVYE----KTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLD-GRELESW---KG-QKTLRI 404 (556)
Q Consensus 337 -~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~-~~~~~~~---~~-~~~~~v 404 (556)
.+|.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||++ ++++... .. .+...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466554443 24567899999999998888764 6799999998 5554322 21 123469
Q ss_pred eEEEEccCCCEEEEEeC-CCeEEEEECC--CCeee----eee--------cCC------ceEEEE-EcCCCCEEEEEEcC
Q 008717 405 SDMAITDDGKRIISICR-EAAILLLDRE--ANFER----WIE--------EEE------VITSFS-LSKDNKYLLVNLIN 462 (556)
Q Consensus 405 ~~v~~s~~g~~l~~~~~-d~~I~i~d~~--~~~~~----~~~--------~~~------~i~~v~-~sp~~~~l~~~~~d 462 (556)
..++|+|||+++++++. ++.|.+|++. +++.. ... +.. .+..++ |+|||++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999887775 6899999875 34321 111 111 588999 99999998877653
Q ss_pred C------eEEEEEcC-CCCccee---EEeCccCceeEEEEeecCC---CCcEEEEeeCC-CcEEEEEcCCCce
Q 008717 463 Q------EIHLWSIE-SDPKLVS---RYKGHKRARFVIRSCFGGF---EQAFIASGSED-SQNVPEILLSESV 521 (556)
Q Consensus 463 g------~I~lwd~~-~~~~~~~---~~~~~~~~~~~i~~~~~s~---~~~~l~sgs~d-g~v~iwd~~~~~~ 521 (556)
. .|.+|++. ++ +... ....+...... ++| +| ||++|++++.+ +.|.+|++..+.+
T Consensus 276 ~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~--~a~-sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHS--NAV-SPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp SSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTC--CCE-EECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCCCeEEEEEECCCC-CEEEeeeeeecCCCCccc--cee-cCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 2 89999996 44 4432 13223222222 445 88 89999998864 8999999987744
No 153
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=7.7e-20 Score=209.29 Aligned_cols=241 Identities=14% Similarity=0.176 Sum_probs=194.6
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC-----------CCCCeEEEEeC-CCCCE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG-----------HRKPVFTVSWS-PNDHQ 331 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-----------h~~~v~~l~~s-~~~~~ 331 (556)
....+..|. .+...+|+|||++|+++ .++.|.+|++.. ..+ ..+.. |...+.+++|+ |||++
T Consensus 237 ~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l---~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~ 310 (1045)
T 1k32_A 237 DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKI---EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL 310 (1045)
T ss_dssp SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCE---EECCCCCCCBCCSEEEECGGGGEEEEEECGGGC
T ss_pred cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEe---eeeccCcccccccccccccccceeeecCCCCCE
Confidence 445555555 36677999999999988 489999999842 222 24443 34468999999 99999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCC-ceEEEEEecCCCeEEEEeCCCcEE-EEECCCCeEEEeecccCCCeeEEEE
Q 008717 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGV-GLISCGWFLDGGGIFAGMTDKSIC-LWDLDGRELESWKGQKTLRISDMAI 409 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~v~~ 409 (556)
|++++ ++.|.+|++.+++... +..+.. .+..++|+ ||+.+++++.++.+. +||+.++....+. .+...+..++|
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~ 386 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGV 386 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEE
Confidence 99988 7899999998877544 555666 89999999 999999999888898 9999887776666 45458999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCe-eeee-ecCCceEEEEEcCCCCEEEEEEcCC----------eEEEEEcCCCCcce
Q 008717 410 TDDGKRIISICREAAILLLDREANF-ERWI-EEEEVITSFSLSKDNKYLLVNLINQ----------EIHLWSIESDPKLV 477 (556)
Q Consensus 410 s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg----------~I~lwd~~~~~~~~ 477 (556)
+|||++|++++.++.|++||+.+++ .... .+...+.+++|||||++|++++.++ .|++||+.++ + +
T Consensus 387 SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~ 464 (1045)
T 1k32_A 387 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-I 464 (1045)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-E
T ss_pred CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-E
Confidence 9999999999999999999999887 3333 6788899999999999999887654 8999999987 5 6
Q ss_pred eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
..+..|...+.. ..| +|||++|++++.++...+|+....
T Consensus 465 ~~l~~~~~~~~~--~~~-spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 465 FAATTENSHDYA--PAF-DADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EECSCSSSBEEE--EEE-CTTSCEEEEEESCCCCCEECSSSS
T ss_pred EEeeCCCcccCC--ceE-cCCCCEEEEEecccCCcCcchhcc
Confidence 677777665443 556 999999999999888888876543
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=3.1e-19 Score=183.68 Aligned_cols=201 Identities=14% Similarity=0.157 Sum_probs=150.8
Q ss_pred ccCCcEEEEEEccCCCEEE----EEeCCCcEEEEEeecC--------CeeEEEEEecCCCCCeEEEEeCCC-CCEEEEEe
Q 008717 270 AHSDEVWFLQFSHDGKYLA----SSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCG 336 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~la----s~s~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~ 336 (556)
.|.+.|.+++|+|+|++|| +|+.|++|+|||+.+. ..+.....+.+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3677899999999999999 7889999999999754 222335667789999999999998 78999999
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc------cCCCeeEEEEc
Q 008717 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ------KTLRISDMAIT 410 (556)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~v~~s 410 (556)
.||+|++||++++..+.....|...|.+++|+|+|++|++|+.||.|++||+++.....+..+ +...|.+++|+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEe
Confidence 999999999999977777777888999999999999999999999999999985444333322 12278999999
Q ss_pred cCCCEEEEE-eCCC------eEEEEECCCCe----eeeee----------cCCceEEEEEcCCCCEEEEEEc-CCeEEEE
Q 008717 411 DDGKRIISI-CREA------AILLLDREANF----ERWIE----------EEEVITSFSLSKDNKYLLVNLI-NQEIHLW 468 (556)
Q Consensus 411 ~~g~~l~~~-~~d~------~I~i~d~~~~~----~~~~~----------~~~~i~~v~~sp~~~~l~~~~~-dg~I~lw 468 (556)
+++.++++. +.+| .+++||++... ..+.. ...+...+..-++.+++++++. .+.|.++
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 988776543 3443 39999998652 11111 1222223344477777776654 3445555
Q ss_pred Ec
Q 008717 469 SI 470 (556)
Q Consensus 469 d~ 470 (556)
..
T Consensus 330 ~~ 331 (434)
T 2oit_A 330 AR 331 (434)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.6e-19 Score=193.58 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=194.5
Q ss_pred chHHHHHHHHHhhccccceeecCCCCceeeec-CCCCCCCCCCcceeEEecccC-CcEEEEEEccCCCEEEEEeC---CC
Q 008717 220 KRLEHLVEKALDVQRDSCLFHNTSDSDFSLYS-DHQCGRNRIPSQTLQILEAHS-DEVWFLQFSHDGKYLASSSK---DQ 294 (556)
Q Consensus 220 ~rl~~ll~~~~~~q~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~l~~h~-~~V~~~~~sp~g~~las~s~---dg 294 (556)
.++...++...........|++++...+.... +.+...|.+.......+..|. ..|.+++|||| +.+++++. +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSC
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCc
Confidence 34444444444555555556655543333332 444445555555566666666 68999999999 77777765 56
Q ss_pred cEEEEEeec--CCeeEEEEEecCCCCCeEEEEeCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCC
Q 008717 295 SAIIWEVKE--DGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (556)
Q Consensus 295 ~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 371 (556)
...+|.+.. .+... .+..+ ..+...+|+||++. +++.+.++.+.+||+.+++.......+. .+++|+|||
T Consensus 89 ~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG 161 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRG 161 (582)
T ss_dssp CEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEET
T ss_pred ceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCC
Confidence 677877765 33322 33322 23456788888863 3344444556699999988765554433 789999999
Q ss_pred CeEEEEeCC----CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCe-eeeeecCCce
Q 008717 372 GGIFAGMTD----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA--AILLLDREANF-ERWIEEEEVI 444 (556)
Q Consensus 372 ~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--~I~i~d~~~~~-~~~~~~~~~i 444 (556)
+++++++.+ +.|++||+.+++...+..+. ..+..++|+|||+.|+++..++ .|++||+.++. .....+...+
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 240 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDF 240 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCEEECCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHH
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcCh
Confidence 999988876 78999999988777665443 4789999999999999888888 89999999887 4333455566
Q ss_pred EEEE--------EcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC---cEEE
Q 008717 445 TSFS--------LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QNVP 513 (556)
Q Consensus 445 ~~v~--------~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg---~v~i 513 (556)
..++ |+|||.++++++.++.+++|++ + +.... +...+. .+.| + +++++++++.+. .+++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~---~~~~v~--~~~~-s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEA---PQGNHG--RVVL-W-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECC---CSSEEE--EEEE-E-TTEEEEEEEETTEEEEEEE
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceecc---CCCceE--EEEe-c-CCEEEEEEcCCCCCCeEEE
Confidence 6666 9999998999999999999999 5 54442 223332 3556 7 999999888875 4777
Q ss_pred EEcCC
Q 008717 514 EILLS 518 (556)
Q Consensus 514 wd~~~ 518 (556)
|+..+
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 77654
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=4e-19 Score=180.02 Aligned_cols=258 Identities=13% Similarity=0.004 Sum_probs=181.5
Q ss_pred cceeEEecccCCcEEE-----EEEccCCCEEEEEeC-CCc--EEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE
Q 008717 262 SQTLQILEAHSDEVWF-----LQFSHDGKYLASSSK-DQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL 333 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~-----~~~sp~g~~las~s~-dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 333 (556)
...+..+..|...... .+|||||++|++++. ++. |.+||+.++ .......++...+..+.|+|||+.|+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCCCEEE
Confidence 4566777777777766 899999999999887 674 777777654 33344445555555778999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEEecCCCceEEEE--EecCCCeEEEE----------------------eCCCcEEEEECC
Q 008717 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCG--WFLDGGGIFAG----------------------MTDKSICLWDLD 389 (556)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~----------------------~~dg~i~vwd~~ 389 (556)
.++.++.|++||+.+++....+..+...+.... ++|++..++.. ..+..|.+||+.
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 999999999999999988777776666554444 47899888743 234679999999
Q ss_pred CCeEEEeecccCCCeeEEEEcc-CCCEEEEEeCC------CeEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEE
Q 008717 390 GRELESWKGQKTLRISDMAITD-DGKRIISICRE------AAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 390 ~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d------~~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~ 459 (556)
+++...+..... .+..++|+| ||+.|+.+..+ ..|.++|..+.. ..+..+. ..+..+.|+|||+.|+..
T Consensus 177 ~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 177 TGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp TCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence 887776665443 789999999 99988877653 378888987766 3333333 357889999999987665
Q ss_pred Ec-CC----eEEEEEcCCCCcc--eeEEeCccCceeEEE-EeecCCCCcEEEEe---------eCCCcEEEEEcCCCcee
Q 008717 460 LI-NQ----EIHLWSIESDPKL--VSRYKGHKRARFVIR-SCFGGFEQAFIASG---------SEDSQNVPEILLSESVA 522 (556)
Q Consensus 460 ~~-dg----~I~lwd~~~~~~~--~~~~~~~~~~~~~i~-~~~~s~~~~~l~sg---------s~dg~v~iwd~~~~~~~ 522 (556)
+. ++ .|++||+.++ +. +..+.++........ ..| +|||+.|+.. ..+..|++||+.+++..
T Consensus 256 ~~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETL-ENRQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp EEETTCCCEEEEEECTTTC-CEEEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred ecCCCCCcceEEEEecCCC-ceEEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 43 22 3999999887 42 223333111000000 134 8999988754 45678999999988765
Q ss_pred eee
Q 008717 523 AAA 525 (556)
Q Consensus 523 ~~~ 525 (556)
...
T Consensus 334 ~l~ 336 (388)
T 3pe7_A 334 RVA 336 (388)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=6.2e-19 Score=174.47 Aligned_cols=230 Identities=10% Similarity=0.069 Sum_probs=167.0
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-C-CeEEEEeCCCCCEEEE-EeCCCcEEEEECCCCcEEEEEecCC--
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-K-PVFTVSWSPNDHQLLT-CGQEEAIRRWDVNSGECLHVYEKTG-- 359 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~-~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~-- 359 (556)
++|++++.++.|.+||..++ +....+.... . .+..++|+|+++++++ ++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 47899999999999999865 3444444222 1 4788999999987654 4557899999999999887776321
Q ss_pred ---CceEEEEEecCCCeEEEEe------------CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 360 ---VGLISCGWFLDGGGIFAGM------------TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 360 ---~~v~~i~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
..+.+++|+|+|+++++++ .++.|.+||+.+.+........ ..+.+++|+|+|++++++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCe
Confidence 2467899999999999886 5799999999887665444333 368899999999988887 688
Q ss_pred EEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCC------------------------eEEEEEcCCCCcce-e
Q 008717 425 ILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ------------------------EIHLWSIESDPKLV-S 478 (556)
Q Consensus 425 I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg------------------------~I~lwd~~~~~~~~-~ 478 (556)
|.+||+.+++ ............+.|+|+++++++.+.++ .|.+||+.++ +.. .
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~ 234 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG-EMAMR 234 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC-CEEEE
T ss_pred EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC-CceEe
Confidence 9999999887 33332222112347899998776554332 4789999887 443 2
Q ss_pred EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
.+..+.... ..+.| +|+|++++++ ++.|++||+.+++......
T Consensus 235 ~~~~~~~~~--~~~~~-s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 277 (337)
T 1pby_B 235 EVRIMDVFY--FSTAV-NPAKTRAFGA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EEEECSSCE--EEEEE-CTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred ecCCCCCce--eeEEE-CCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence 233343332 33566 9999999988 7999999999887765543
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4.3e-19 Score=195.69 Aligned_cols=244 Identities=9% Similarity=0.037 Sum_probs=175.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCC-----eEEEEeCCCCCEEEEEeCC---------C
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP-----VFTVSWSPNDHQLLTCGQE---------E 339 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~~~~l~s~~~d---------g 339 (556)
...+++|+|||++++++ |++|++||+.++.. ...+.+|... ...+.|||||++|++++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 35578999999999886 99999999987743 3445666533 2347899999999998876 5
Q ss_pred cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-CC----------------
Q 008717 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TL---------------- 402 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~---------------- 402 (556)
.+.+||+.+++.. .+..+...+...+|+|||+.|+.+. ++.|++||+.++....+.... ..
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 6779999998754 4556677899999999999999885 689999999876655543221 11
Q ss_pred -CeeEEEEccCCCEEEEEeCCC------------------------------------eEEEEECCC---C---e-eeee
Q 008717 403 -RISDMAITDDGKRIISICREA------------------------------------AILLLDREA---N---F-ERWI 438 (556)
Q Consensus 403 -~v~~v~~s~~g~~l~~~~~d~------------------------------------~I~i~d~~~---~---~-~~~~ 438 (556)
....+.|||||+.|+.++.|. .|++||+.+ + . ..+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 123589999999998875321 588899988 6 4 2332
Q ss_pred e------cCCceEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCCc------ceeEE--eCccCcee---EEEEeecCC
Q 008717 439 E------EEEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDPK------LVSRY--KGHKRARF---VIRSCFGGF 497 (556)
Q Consensus 439 ~------~~~~i~~v~~sp~~~~l~~~~~d----g~I~lwd~~~~~~------~~~~~--~~~~~~~~---~i~~~~~s~ 497 (556)
. +...+..++|+|||+.++..... ..|++||+.++ + .+..+ .+|...+. .....| +|
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg-~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f-sp 328 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES-SGRWNCLVARQHIEMSTTGWVGRFRPSEPHF-TL 328 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT-TTEEEECGGGCEEEECSSSCSSSSSCCCCEE-CT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC-ccccceeEEEEeeeccCCceEccCcCCCceE-cC
Confidence 2 66779999999999977765443 36999999887 4 12222 44544322 112456 99
Q ss_pred CCcEEE-EeeC-C--CcEEEEEcCCCceeeeec
Q 008717 498 EQAFIA-SGSE-D--SQNVPEILLSESVAAAAS 526 (556)
Q Consensus 498 ~~~~l~-sgs~-d--g~v~iwd~~~~~~~~~~~ 526 (556)
||+.|+ ..++ + ..|++|++.++.......
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~ 361 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFITK 361 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEESCC
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEeccc
Confidence 999877 6654 3 368888988877655443
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=4.6e-17 Score=157.65 Aligned_cols=242 Identities=10% Similarity=0.124 Sum_probs=180.7
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec------CCCCCeEEEEe-CCCCCEEEEEeC-CCcE
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS------GHRKPVFTVSW-SPNDHQLLTCGQ-EEAI 341 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~-s~~~~~l~s~~~-dg~i 341 (556)
+|-..+.+++++++|+++++...++.|.+||.. +. ....+. +|...+..+++ .+++..+++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 466789999999999988888889999999976 32 223332 24457889999 567766666543 7899
Q ss_pred EEEECCCCcEEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-ccCCCeeEEEEccCCCEEEEE
Q 008717 342 RRWDVNSGECLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~ 419 (556)
.+|| .+++.+..+.. +...+.+++++|+|+.+++...++.|.+||..+..+..+.. .....+..++++++|+.+++.
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 9999 56777776653 34568899999999887777788999999987766655532 223368999999999988877
Q ss_pred eCCCeEEEEECCCCeeeeeec---CCceEEEEEcCCCCEEEEEEcCC-eEEEEEcCCCCcceeEEeCccCceeEEEEeec
Q 008717 420 CREAAILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg-~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
..++.|++||........... ...+..++++++|+++++...++ .|.+||.. + +.+..+..+........+++
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~~i~~- 258 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVKHAQCFDVAL- 258 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSCCSCEEEEEE-
T ss_pred CCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCCCCcceeEEE-
Confidence 789999999986554333322 25789999999999888887776 99999954 4 56777766544322334556
Q ss_pred CCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 496 GFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
+|+|+++++ +.|++|++|++....
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcEEEE-CCCCeEEEEEccccc
Confidence 889987776 679999999986543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=197.74 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=167.5
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC---CeEEEEeCCCCCEEEEEeC---------CCcEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQ---------EEAIRRW 344 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~---------dg~i~iw 344 (556)
+++|+|||++++++ .|++|++||+.++. ....+..|.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ---SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCC---EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCc---EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 67899999765554 69999999998763 2333443432 4899999999999999876 6899999
Q ss_pred ECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-ccCC-----------------CeeE
Q 008717 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTL-----------------RISD 406 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~-----------------~v~~ 406 (556)
|+.+++.+... .....+..++|+|||+.|+.+. ++.|++||+.++....+.. .+.. ...+
T Consensus 96 d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 96 DLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 99998762101 1124578899999999999986 6899999998766554432 2211 1258
Q ss_pred EEEccCCCEEEEEeCCC----------------------------------eEEEEECCCCee----ee------eecCC
Q 008717 407 MAITDDGKRIISICREA----------------------------------AILLLDREANFE----RW------IEEEE 442 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d~----------------------------------~I~i~d~~~~~~----~~------~~~~~ 442 (556)
++|+|||++|++++.|. .|++||+.++.. .. ..+..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999887652 789999988752 11 23667
Q ss_pred ceEEEEEcCCCCEEEEEEcCC----eEEEEE----cCCCCcceeEE----eCccCcee---EEEEeecCCCCcEEEE--e
Q 008717 443 VITSFSLSKDNKYLLVNLINQ----EIHLWS----IESDPKLVSRY----KGHKRARF---VIRSCFGGFEQAFIAS--G 505 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg----~I~lwd----~~~~~~~~~~~----~~~~~~~~---~i~~~~~s~~~~~l~s--g 505 (556)
.+.+++||||++++++....+ .|.+|| +.++ +....+ .+|...+. .....| +|||+.|+. +
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~ 331 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVF-SYDAISYYKIFS 331 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEE-CTTSSCEEEEEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEE-CCCCCeEEEEEE
Confidence 789999999988777754332 488999 7766 554444 35555432 002445 999996544 4
Q ss_pred eCCC--cEEEEEcCCCce
Q 008717 506 SEDS--QNVPEILLSESV 521 (556)
Q Consensus 506 s~dg--~v~iwd~~~~~~ 521 (556)
..+| .|++|++.+++.
T Consensus 332 ~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp CTTSCEEEEEESSCSTTC
T ss_pred ccCCceEEEEEECCCCce
Confidence 4555 577778777654
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=5.6e-17 Score=161.68 Aligned_cols=210 Identities=14% Similarity=0.204 Sum_probs=150.6
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCC---------CCCeEEEEeCCCCCEEE
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGH---------RKPVFTVSWSPNDHQLL 333 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h---------~~~v~~l~~s~~~~~l~ 333 (556)
.+..+..+...+..++|+|||++|++++ .++.|.+|++...+....+..+... ...+.+++|+|+|+.++
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 3444456788899999999999998887 6799999999755554444444321 23488999999999666
Q ss_pred EEeCCCcEEEEECC-CCcEEE--EEec-CCCceEEEEEecCCCeEEEE-eCCCcEEEEECCC--CeEEEe---ecccC--
Q 008717 334 TCGQEEAIRRWDVN-SGECLH--VYEK-TGVGLISCGWFLDGGGIFAG-MTDKSICLWDLDG--RELESW---KGQKT-- 401 (556)
Q Consensus 334 s~~~dg~i~iwd~~-~~~~~~--~~~~-~~~~v~~i~~~~~~~~l~~~-~~dg~i~vwd~~~--~~~~~~---~~~~~-- 401 (556)
+...++.|.+|++. +++... .+.. ....+..++|+|||++++++ ..++.|.+|+++. +.+... .....
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 236 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY 236 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence 66668899999998 565332 2222 23367889999999976664 5678999999863 443222 11111
Q ss_pred ---CCeeEEEEccCCCEEE-EEeCCCeEEEEECCCC-e----eeeeecCCceEEEEEcCCCCEEEEEEcC-CeEEEEEc-
Q 008717 402 ---LRISDMAITDDGKRII-SICREAAILLLDREAN-F----ERWIEEEEVITSFSLSKDNKYLLVNLIN-QEIHLWSI- 470 (556)
Q Consensus 402 ---~~v~~v~~s~~g~~l~-~~~~d~~I~i~d~~~~-~----~~~~~~~~~i~~v~~sp~~~~l~~~~~d-g~I~lwd~- 470 (556)
..+..++|+|||++++ +...++.|.+||+... . .....+...+..++|+|||++|++++.+ +.|.+|++
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 2588999999999874 5556899999998732 2 2222345568899999999999888765 89999955
Q ss_pred -CCC
Q 008717 471 -ESD 473 (556)
Q Consensus 471 -~~~ 473 (556)
.++
T Consensus 317 ~~tg 320 (347)
T 3hfq_A 317 LTSG 320 (347)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 455
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=2.9e-17 Score=163.40 Aligned_cols=227 Identities=7% Similarity=0.009 Sum_probs=163.4
Q ss_pred ecCCCCceeeecCCCCCCCCCCcceeEEecccC-CcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCC
Q 008717 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHS-DEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (556)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~-~~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (556)
....+..+.+|+..+ .+.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.++ +....+..+.
T Consensus 16 ~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~~~~~~ 85 (349)
T 1jmx_B 16 VTNYPNNLHVVDVAS-------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFHANLSS 85 (349)
T ss_dssp EEETTTEEEEEETTT-------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEESCC
T ss_pred EeCCCCeEEEEECCC-------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEEEEccc
Confidence 344555666665432 34455555433 2578899999998665 4557899999999865 3333333222
Q ss_pred ------CCeEEEEeCCCCCEEEEEeCC------------CcEEEEECCCCcE---EEEEecCCCceEEEEEecCCCeEEE
Q 008717 318 ------KPVFTVSWSPNDHQLLTCGQE------------EAIRRWDVNSGEC---LHVYEKTGVGLISCGWFLDGGGIFA 376 (556)
Q Consensus 318 ------~~v~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~ 376 (556)
..+.+++|+|||+++++++.+ +.|.+||+.+++. +..+.. ...+.+++|+|+|+ +++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYV 163 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEE
Confidence 237889999999999998865 8999999988543 334443 33588899999999 666
Q ss_pred EeCCCcEEEEECCCCeEEEeeccc--------------------------------------------------------
Q 008717 377 GMTDKSICLWDLDGRELESWKGQK-------------------------------------------------------- 400 (556)
Q Consensus 377 ~~~dg~i~vwd~~~~~~~~~~~~~-------------------------------------------------------- 400 (556)
++. .|.+||+.+++........
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 4999999765543322111
Q ss_pred ------------CCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEE
Q 008717 401 ------------TLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (556)
Q Consensus 401 ------------~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~ 466 (556)
...+..++|+| +|++++++ ++.|.+||+.+++ .........+.+++|+|+|++|++++.++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEE
Confidence 01345677889 99998887 8899999999988 44455556688999999999999888899999
Q ss_pred EEEcCCCCcceeEEeCc
Q 008717 467 LWSIESDPKLVSRYKGH 483 (556)
Q Consensus 467 lwd~~~~~~~~~~~~~~ 483 (556)
+||+.++ +.+..+...
T Consensus 320 v~d~~~~-~~~~~~~~~ 335 (349)
T 1jmx_B 320 VFNPDTL-EKVKNIKLP 335 (349)
T ss_dssp EEETTTT-EEEEEEECS
T ss_pred EEecccc-ceeeeeecC
Confidence 9999988 777777654
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=189.29 Aligned_cols=245 Identities=12% Similarity=0.057 Sum_probs=167.8
Q ss_pred ceeEEecccCC---cEEEEEEccCCCEEEEEeC---------CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCC
Q 008717 263 QTLQILEAHSD---EVWFLQFSHDGKYLASSSK---------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH 330 (556)
Q Consensus 263 ~~~~~l~~h~~---~V~~~~~sp~g~~las~s~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 330 (556)
+....+.+|.. .|.+++|||||++||+++. ++.|++||+.++... ....+ ...+..++|||||+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-~~~~l---~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-RGNEL---PRPIQYLCWSPVGS 122 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC---CSSBCCEEECSSTT
T ss_pred cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-cceec---CcccccceECCCCC
Confidence 44455555544 4899999999999999876 789999999865210 00112 35688999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEEe-cCCCce-----------------EEEEEecCCCeEEEEeCCC-----------
Q 008717 331 QLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGL-----------------ISCGWFLDGGGIFAGMTDK----------- 381 (556)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~i~~~~~~~~l~~~~~dg----------- 381 (556)
.|+++. ++.|++||+.+++...... ++...+ .+++|+|||++|++++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999986 7899999999887654332 222222 4799999999999987552
Q ss_pred -----------------------cEEEEECCCCeEE---Eee-----cccCCCeeEEEEccCCCEEEEEeCC----CeEE
Q 008717 382 -----------------------SICLWDLDGRELE---SWK-----GQKTLRISDMAITDDGKRIISICRE----AAIL 426 (556)
Q Consensus 382 -----------------------~i~vwd~~~~~~~---~~~-----~~~~~~v~~v~~s~~g~~l~~~~~d----~~I~ 426 (556)
.|++||+.++... .+. ..+...+.+++|+||++.+++.... ..|.
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~ 281 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLS 281 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEE
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEE
Confidence 7889999876531 221 1244478999999998776664432 2488
Q ss_pred EEE----CCCCe-eee-----eecCCceE-----EEEEcCCCCEEEE--EEcCC--eEEEEEcCCCCcceeEEeCccCce
Q 008717 427 LLD----REANF-ERW-----IEEEEVIT-----SFSLSKDNKYLLV--NLINQ--EIHLWSIESDPKLVSRYKGHKRAR 487 (556)
Q Consensus 427 i~d----~~~~~-~~~-----~~~~~~i~-----~v~~sp~~~~l~~--~~~dg--~I~lwd~~~~~~~~~~~~~~~~~~ 487 (556)
+|| ..+++ ... ..+...+. .+.|+|||+.++. ...+| .|.+||+.++ + ...+..+...+
T Consensus 282 ~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~lt~~~~~v 359 (719)
T 1z68_A 282 ICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQITSGKWEA 359 (719)
T ss_dssp EEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-T-CEECSCSSSCE
T ss_pred EEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-c-eEecccCceEE
Confidence 999 77766 222 34566666 8899999996654 33455 5777787665 4 45565555443
Q ss_pred eEEEEeecCCCCcEEEEeeCC-----CcEEEEEcCC
Q 008717 488 FVIRSCFGGFEQAFIASGSED-----SQNVPEILLS 518 (556)
Q Consensus 488 ~~i~~~~~s~~~~~l~sgs~d-----g~v~iwd~~~ 518 (556)
. ...++ +++.|+..+.+ +.+.+|.+..
T Consensus 360 ~--~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 360 I--NIFRV--TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp E--EEEEE--CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred E--EEEEE--eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 3 34553 66666655554 7888887653
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=8.9e-18 Score=170.32 Aligned_cols=250 Identities=12% Similarity=0.006 Sum_probs=170.6
Q ss_pred ceeEEecccCCc-----EEEEEEccCCCEEEEEeCC---CcEEEEEeecCCeeEEEEEecCCCCCe-EEEEeCCCCCEEE
Q 008717 263 QTLQILEAHSDE-----VWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPV-FTVSWSPNDHQLL 333 (556)
Q Consensus 263 ~~~~~l~~h~~~-----V~~~~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~ 333 (556)
..+..+..+... +.+++|||||++|+.+... ..|.+||+.++ .. ..+..+...+ ..+.|+|||++|+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~-~~l~~~~~~~~~~~~~spdg~~l~ 96 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QA-VQLTEGKGDNTFGGFISTDERAFF 96 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EE-EECCCSSCBCTTTCEECTTSSEEE
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cE-EEeecCCCCccccceECCCCCEEE
Confidence 344555544333 6788999999998877543 36777887754 22 2333333333 3478999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEEecCCCceEE-------------------EEEecCCCeEEEE-----eCCCcEEEEECC
Q 008717 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLIS-------------------CGWFLDGGGIFAG-----MTDKSICLWDLD 389 (556)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~-----~~dg~i~vwd~~ 389 (556)
.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|++||+.
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~ 176 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE 176 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence 9999999999999998876666544432222 3456777766554 356689999998
Q ss_pred CCeEEEeecccCCCeeEEEEcc-CCCEEEEEeCC------CeEEEEECCCCe-eeeeec--CCceEEEEEcCCCCEEEEE
Q 008717 390 GRELESWKGQKTLRISDMAITD-DGKRIISICRE------AAILLLDREANF-ERWIEE--EEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 390 ~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d------~~I~i~d~~~~~-~~~~~~--~~~i~~v~~sp~~~~l~~~ 459 (556)
+++...+... ...+..+.|+| +++.++..+.+ ..|.+||+.++. ..+..+ ...+..++|+|||++|+.+
T Consensus 177 ~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 177 TGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYV 255 (396)
T ss_dssp TCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEE
Confidence 8776655543 33789999999 78877766543 468999987765 333332 2357889999999988877
Q ss_pred EcC-----CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCC-CCcEEEEee----------------CCCcEEEEEcC
Q 008717 460 LIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIASGS----------------EDSQNVPEILL 517 (556)
Q Consensus 460 ~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~sgs----------------~dg~v~iwd~~ 517 (556)
+.+ +.|++||+.++ +...... ... . . ..| +| ||+++++++ .++.|++||+.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g-~~~~l~~-~~~-~-~--~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 256 SYFKGQTDRVIYKANPETL-ENEEVMV-MPP-C-S--HLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EEETTTCCEEEEEECTTTC-CEEEEEE-CCS-E-E--EEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred ecCCCCccceEEEEECCCC-CeEEeee-CCC-C-C--CCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 654 45999999887 4333222 222 1 1 455 78 999888765 34789999998
Q ss_pred CCceeee
Q 008717 518 SESVAAA 524 (556)
Q Consensus 518 ~~~~~~~ 524 (556)
+++....
T Consensus 329 ~~~~~~l 335 (396)
T 3c5m_A 329 AKSAQKL 335 (396)
T ss_dssp TTBCCEE
T ss_pred cCceEEc
Confidence 8876443
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.3e-16 Score=156.25 Aligned_cols=241 Identities=10% Similarity=0.036 Sum_probs=177.8
Q ss_pred cCCcEEEEEEccCCCEEEEEeCC------------------------CcEEEEEeecCCeeEEEEEec-CCCCCeEEEEe
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKD------------------------QSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSW 325 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~ 325 (556)
--+.|.+++++|+|+++++.+.+ +.|.+||..++. ....+. ++-.....+++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---ILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC---EEEEECTTTCSSEEEEEE
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe---EEeccCCCccCCceEEEE
Confidence 34679999999999999888777 479999987653 233332 44567899999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe---------cCCCceEEEEEec-CCCeEEEEe-CCCcEEEEECCCCeE
Q 008717 326 SPNDHQLLTCGQEEAIRRWDVNSGE-CLHVYE---------KTGVGLISCGWFL-DGGGIFAGM-TDKSICLWDLDGREL 393 (556)
Q Consensus 326 s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~i~~~~-~~~~l~~~~-~dg~i~vwd~~~~~~ 393 (556)
+|+|+.+++...++.|++||..... .+..+. .+-.....++++| ++..+++.+ .++.|++||.++..+
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~ 178 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFV 178 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEE
Confidence 9999988888888999999986442 455552 3334688999999 777777776 689999999766655
Q ss_pred EEeecc---------cCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCe-eeee---ecCCceEEEEEcCCCCEEEEE
Q 008717 394 ESWKGQ---------KTLRISDMAITDD-GKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 394 ~~~~~~---------~~~~v~~v~~s~~-g~~l~~~~~d~~I~i~d~~~~~-~~~~---~~~~~i~~v~~sp~~~~l~~~ 459 (556)
..+... +...+..++++|+ +..+++...++.|++||..+++ .... .+...+..++++| +..+++.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 544321 1124899999998 6777777788999999998666 3332 3456788999999 4333333
Q ss_pred -------EcCCeEEEEEcCCCCcceeEEe---CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 460 -------LINQEIHLWSIESDPKLVSRYK---GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 460 -------~~dg~I~lwd~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
..+..|++||..++ +.+..+. ++...... +++ +|+|.++++...+++|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~--ia~-~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHD--IVA-SEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEE--EEE-CTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeE--EEE-CCCCCEEEEECCCCEEEEEeCCcc
Confidence 33458999999988 7888774 44444333 555 899988888899999999998753
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=3.6e-17 Score=165.60 Aligned_cols=245 Identities=12% Similarity=0.049 Sum_probs=167.6
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEE--eCCCCCEEEEE-----
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS--WSPNDHQLLTC----- 335 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~s~----- 335 (556)
+..+...+|...+..++|+|||+.|++++.++.|++||+.++.. ...+..+...+.... ++|++.+++..
T Consensus 71 ~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 147 (388)
T 3pe7_A 71 VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE---NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE 147 (388)
T ss_dssp EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE---EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG
T ss_pred ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeeeechhhcccccceeECCCCCeeccccccCc
Confidence 44445556666666788999999999999999999999987633 223344555454444 48999988743
Q ss_pred -----------------eCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCC------CcEEEEECCCC
Q 008717 336 -----------------GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTD------KSICLWDLDGR 391 (556)
Q Consensus 336 -----------------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~vwd~~~~ 391 (556)
..+..|.+||+.+++..... .+...+..+.|+| ||+.|+.+..+ ..|.++|..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 23467999999998755444 4566789999999 99999887753 37888998877
Q ss_pred eEEEeecccC-CCeeEEEEccCCCEEEEEeC-CC----eEEEEECCCCee-eeeecCCc------eEEEEEcCCCCEEEE
Q 008717 392 ELESWKGQKT-LRISDMAITDDGKRIISICR-EA----AILLLDREANFE-RWIEEEEV------ITSFSLSKDNKYLLV 458 (556)
Q Consensus 392 ~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~-d~----~I~i~d~~~~~~-~~~~~~~~------i~~v~~sp~~~~l~~ 458 (556)
....+..... ..+..++|+|||+.|+..+. ++ .|++||+.+++. .+...... .....|+|||+.|+.
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 6666655442 25788999999997765443 22 399999998872 22222220 122379999998886
Q ss_pred E---------EcCCeEEEEEcCCCCcceeEEeCccC-----------ceeEEEEeecCCCCcEEEEeeC-CCcEEEEEc
Q 008717 459 N---------LINQEIHLWSIESDPKLVSRYKGHKR-----------ARFVIRSCFGGFEQAFIASGSE-DSQNVPEIL 516 (556)
Q Consensus 459 ~---------~~dg~I~lwd~~~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~sgs~-dg~v~iwd~ 516 (556)
. ..+..|++||+.++ + +..+..+.. .+ ....| +|||+.|+.++. +|...+|.+
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~--~~~~~-spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNG-T-QHRVARHDTSWKVFEGDRQVTH--PHPSF-TPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ----------CCCCEEEEEETTTT-E-EEEEEECCCCCCCBTTBSSTTC--CCCEE-CTTSSEEEEEECTTSSCEEEEE
T ss_pred EeeeccccccCCCCEEEEEeccCC-c-eEEeccccCcccccccccccCC--CCccC-CCCCCEEEEEecCCCceeEEEE
Confidence 4 34568999999886 4 345555544 22 22455 999998876664 666666644
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=7.7e-17 Score=175.41 Aligned_cols=248 Identities=9% Similarity=0.070 Sum_probs=178.8
Q ss_pred EEecccCCcEEEEEEccCCCEEEEE--eCCCcEEEEEeecCCeeEEEEEecCCCCCeE---------EEEeC--CCCCE-
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF---------TVSWS--PNDHQ- 331 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~~~~~- 331 (556)
..+.+|...|..++|++++-++++. +.++...||....++. ...+..|...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3567899999999999887777776 5688999999754432 355666766665 56665 99998
Q ss_pred EEEEeC-CCcEEEEECC--C-CcEEEEEec-----CCCceEEEEEecCCCeEEEEeCC----------CcEEEEECCC--
Q 008717 332 LLTCGQ-EEAIRRWDVN--S-GECLHVYEK-----TGVGLISCGWFLDGGGIFAGMTD----------KSICLWDLDG-- 390 (556)
Q Consensus 332 l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d----------g~i~vwd~~~-- 390 (556)
|+.++. +..|.+|++. + ++ ...+.. +...+.+++|+|||+.|++++.+ ..|++||+.+
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 776654 5667777775 3 44 344544 56678899999999999998876 5899999988
Q ss_pred ----CeEEEee-cccCCCeeEEEEccCCCEEEEEeCC--------CeEEEEECC-CC---e-eeeee-cCCceEEEEEcC
Q 008717 391 ----RELESWK-GQKTLRISDMAITDDGKRIISICRE--------AAILLLDRE-AN---F-ERWIE-EEEVITSFSLSK 451 (556)
Q Consensus 391 ----~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d--------~~I~i~d~~-~~---~-~~~~~-~~~~i~~v~~sp 451 (556)
+....+. .++ ..+..++|+|||++|+.++.+ ..|++||+. ++ . ..+.. +...+..+.|+|
T Consensus 173 ~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 173 AADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred cccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 6666655 433 378889999999999987755 379999999 56 4 33333 467899999999
Q ss_pred CCCEEEEEEcCC--eEEEEEcCCCCcceeEEeCccCce---e---EEEEeecCCCCcEEEEeeCCCcEEEE--EcCCCce
Q 008717 452 DNKYLLVNLINQ--EIHLWSIESDPKLVSRYKGHKRAR---F---VIRSCFGGFEQAFIASGSEDSQNVPE--ILLSESV 521 (556)
Q Consensus 452 ~~~~l~~~~~dg--~I~lwd~~~~~~~~~~~~~~~~~~---~---~i~~~~~s~~~~~l~sgs~dg~v~iw--d~~~~~~ 521 (556)
||++++++..++ .|.+||+.++ +.......+.... + ...+.| +++++++++++. +.+++| |+.++++
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCeEEEEEECCCC-ceeecccccccccCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence 999777877777 6777776565 4333333222110 0 112344 789999999999 999999 5555654
No 168
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=7.9e-16 Score=168.78 Aligned_cols=241 Identities=12% Similarity=0.086 Sum_probs=172.2
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc----
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 340 (556)
+|...+..++|||||++||.++.++ .|++||+.++.... ..+.. ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~--~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc--ccccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555789999999999999876543 89999998763221 12221 22677999999999999988766
Q ss_pred ------------EEEEECCCCcE--EEEEec--CCCceEEEEEecCCCeEEEEeC-----CCcEEEEECCC------C--
Q 008717 341 ------------IRRWDVNSGEC--LHVYEK--TGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLDG------R-- 391 (556)
Q Consensus 341 ------------i~iwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~l~~~~~-----dg~i~vwd~~~------~-- 391 (556)
|++|++.+++. ...+.. +...+..+.|+|||++|+.++. +..|++||+.+ +
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999988762 233333 3455788999999999988764 56899999975 4
Q ss_pred eEEEeecccCCCeeEEEEccCCCEEEEEeCC----CeEEEEECCCCe----eeeeecCC--ceEEEEEcCCCCEEEEEEc
Q 008717 392 ELESWKGQKTLRISDMAITDDGKRIISICRE----AAILLLDREANF----ERWIEEEE--VITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 392 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----~~I~i~d~~~~~----~~~~~~~~--~i~~v~~sp~~~~l~~~~~ 461 (556)
....+..+.. .+.. .|+|+|+.|+..+.. +.|.+||+.++. ..+..+.. .+..++|++++.++++...
T Consensus 278 ~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 278 KWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 3555554443 3443 588999988776653 369999998763 44555544 6888999988888888888
Q ss_pred CCe--EEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEe-e---CCCcEEEEEcCCCc
Q 008717 462 NQE--IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-S---EDSQNVPEILLSES 520 (556)
Q Consensus 462 dg~--I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sg-s---~dg~v~iwd~~~~~ 520 (556)
++. |++||+.++ +.+..+..+...+. .+.+ +|+++.++.. + ..++|+.||+.+++
T Consensus 356 ~g~~~l~~~~~~~g-~~~~~l~~~~~~v~--~~~~-s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATG-ALLKIFPLEVGSVV--GYSG-QKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTC-CEEEEECCCSSEEE--EEEC-CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCC-CEEEecCCCCceEE--EEec-CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 885 666777666 66777777744432 2444 7888765533 2 35789999998877
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=8.3e-16 Score=154.22 Aligned_cols=248 Identities=11% Similarity=0.058 Sum_probs=177.1
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecC------CCCCeEEEEeC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSG------HRKPVFTVSWS 326 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s 326 (556)
+.+..+..+..+ .++|+|||+++++++ .++.|.+||..+.. ....+.. +......++++
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~---~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT---FEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---EEEEEEECTTBCCBCCCGGGEEEC
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc---EEEEEEcCccccccCCCcceEEEC
Confidence 445566666555 899999999999886 36789999987653 3333332 22456789999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCcEEEE-EecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCC-CeEE-Ee----
Q 008717 327 PNDHQLLTCGQ--EEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDG-RELE-SW---- 396 (556)
Q Consensus 327 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~-~~---- 396 (556)
|||++|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|++.. +.+. ..
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 99999998874 57899999999988877 54322 2335677765 6778888999999999864 3332 11
Q ss_pred -ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee----------cC----CceEEEEEcCCCCEEEEEEc
Q 008717 397 -KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE----------EE----EVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 397 -~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~----------~~----~~i~~v~~sp~~~~l~~~~~ 461 (556)
..... ....+.+++++..++..+.++.|.++|+......... .. .....++|+|+++.++++..
T Consensus 195 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKD-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTT-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCC-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 11111 2223445788888888889999999999765411110 00 11123789999988887654
Q ss_pred -----------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC--ceeeee
Q 008717 462 -----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE--SVAAAA 525 (556)
Q Consensus 462 -----------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~ 525 (556)
.+.|.+||+.+. +.+.++..+. ... +.| +|||++|++++. +.|.+||..++ +++...
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~--ia~-spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALS--MTI-DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCE--EEE-ETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred cCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeE--EEE-CCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 348999999998 8899988777 333 566 999999998887 99999999999 776664
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=2.7e-15 Score=150.34 Aligned_cols=205 Identities=15% Similarity=0.234 Sum_probs=142.9
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEE---ecC--------CCCCeEEEEeCCCCCEE
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHR---LSG--------HRKPVFTVSWSPNDHQL 332 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~---~~~--------h~~~v~~l~~s~~~~~l 332 (556)
+.....+...+..+++ +|++|++++ .++.|.+|++...+....... ..+ +...+.+++|+|+|+++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 3344445667778888 888877766 578999999976543321111 111 12345889999999977
Q ss_pred EEEeC-CCcEEEEECCCCc-------E------EEEEecCCCceEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEee
Q 008717 333 LTCGQ-EEAIRRWDVNSGE-------C------LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWK 397 (556)
Q Consensus 333 ~s~~~-dg~i~iwd~~~~~-------~------~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 397 (556)
++++. ++.|.+|++.... . ..........+..++|+|||+++++++ .++.|.+||++++.+....
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 76654 7899999887543 1 111223355678999999999888877 6899999999866543322
Q ss_pred c-----ccCCCeeEEEEccCCCEEEEEeCC--CeEEEEECC--CCe---eeeeecCCceEEEEEcCCCCEEEEEE-cCCe
Q 008717 398 G-----QKTLRISDMAITDDGKRIISICRE--AAILLLDRE--ANF---ERWIEEEEVITSFSLSKDNKYLLVNL-INQE 464 (556)
Q Consensus 398 ~-----~~~~~v~~v~~s~~g~~l~~~~~d--~~I~i~d~~--~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~ 464 (556)
. .+...+..++|+|||++++++..+ +.|.+|++. ++. .........+.+++|+|||++|++++ .++.
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence 1 112357899999999998776654 899999996 333 22222245688999999999998888 5689
Q ss_pred EEEEEcC
Q 008717 465 IHLWSIE 471 (556)
Q Consensus 465 I~lwd~~ 471 (556)
|.+|++.
T Consensus 330 v~v~~~d 336 (361)
T 3scy_A 330 IQIFERD 336 (361)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9997554
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=8.1e-15 Score=145.09 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=171.4
Q ss_pred CcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--
Q 008717 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-- 338 (556)
Q Consensus 261 ~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-- 338 (556)
.......+.++...+.+++|+|+|++++++..++.|.+||..++. .......+...+.+++|+|+|+++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~ 109 (333)
T 2dg1_A 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK 109 (333)
T ss_dssp ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---EEEEeeCCCCCcceEEECCCCcEEEEeCCCCC
Confidence 345566677777888999999999988888889999999987642 222222466789999999999988877666
Q ss_pred --CcEEEEECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeC------CCcEEEEECCCCeEEEeecccCCCeeEEE
Q 008717 339 --EAIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLRISDMA 408 (556)
Q Consensus 339 --g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~ 408 (556)
+.|.+||..++.....+. .....+.+++++|+|+.+++... .+.|..+|.+++.+..+.... ..+..++
T Consensus 110 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~i~ 188 (333)
T 2dg1_A 110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-SVANGIA 188 (333)
T ss_dssp SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-SSEEEEE
T ss_pred CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-CcccceE
Confidence 689999998877654443 23456899999999987776654 356777777765555443322 2688999
Q ss_pred EccCCCEEEE-EeCCCeEEEEECCC-Ce-ee------eeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 409 ITDDGKRIIS-ICREAAILLLDREA-NF-ER------WIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 409 ~s~~g~~l~~-~~~d~~I~i~d~~~-~~-~~------~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
|+|+|+.++. .+.++.|.+||..+ +. .. .... ...+..++++++|+++++...++.|.+||.. + +.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~~~ 266 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-YPI 266 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-CEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-C-CEE
Confidence 9999986654 45678999999964 22 11 1111 1367889999999988887778999999984 4 566
Q ss_pred eEEeCccC------ceeEEEEeecCCCCcEEEEeeCCC
Q 008717 478 SRYKGHKR------ARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 478 ~~~~~~~~------~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
..+..+.. .. ..++| +||++.|+.++.++
T Consensus 267 ~~~~~~~~~~g~~~~~--~~~~~-~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRS--THPQF-IPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTGGGTCSCBC--CEEEE-CTTSCEEEEEEECG
T ss_pred EEEEcCCCccccccCc--ceEEE-CCCCCEEEEEeCcc
Confidence 66654432 22 33566 78987776666553
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=2.3e-15 Score=151.25 Aligned_cols=235 Identities=11% Similarity=0.085 Sum_probs=156.9
Q ss_pred EEEEEeCC--CcEEEEEeec-CCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEecC-C
Q 008717 286 YLASSSKD--QSAIIWEVKE-DGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKT-G 359 (556)
Q Consensus 286 ~las~s~d--g~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~ 359 (556)
+++.|+.. +.|.+|+++. .+.+..+.... .....+..++|+||+++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 5688888753 23343333322 234568899999999999999888 99999997 78765443311 1
Q ss_pred CceEEEEEecCCCe--EEEEe-------------CCCcEEEEECC-CCeEEE-eec---ccCCCeeEEEEccCCCEEEEE
Q 008717 360 VGLISCGWFLDGGG--IFAGM-------------TDKSICLWDLD-GRELES-WKG---QKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 360 ~~v~~i~~~~~~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~-~~~---~~~~~v~~v~~s~~g~~l~~~ 419 (556)
+.+..++|+|||++ +++++ .++.+.+|+++ .+.+.. ... .+...+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23456889999995 44543 68999999996 343322 221 233479999999999988876
Q ss_pred eC-CCeEEEEECC-CCeee---eee---cCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcC--CCCcce---eEEeCcc-
Q 008717 420 CR-EAAILLLDRE-ANFER---WIE---EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE--SDPKLV---SRYKGHK- 484 (556)
Q Consensus 420 ~~-d~~I~i~d~~-~~~~~---~~~---~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~--~~~~~~---~~~~~~~- 484 (556)
+. ++.|++||+. +++.. ... +...+..++|+|||+++++++. ++.|.+|++. ++ +.. ..+....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPP 241 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCC
Confidence 64 6799999998 66521 121 3566899999999999988775 6899999875 44 332 1222111
Q ss_pred ---Cce-------eEEEEeecCCCCcEEEEeeCCC------cEEEEEcC-CCcee
Q 008717 485 ---RAR-------FVIRSCFGGFEQAFIASGSEDS------QNVPEILL-SESVA 522 (556)
Q Consensus 485 ---~~~-------~~i~~~~~s~~~~~l~sgs~dg------~v~iwd~~-~~~~~ 522 (556)
... ....++|++|||++|++++.+. .|.+|++. ++++.
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 101 2344662399999988776432 89999996 66654
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=4.5e-15 Score=144.42 Aligned_cols=245 Identities=10% Similarity=0.023 Sum_probs=178.7
Q ss_pred cceeEEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (556)
...+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 344555666777889999999998 7778888999999998753 2445567788999999999998887777789
Q ss_pred EEEEECCCCcEEEEEecC----CCceEEEEEecCCCeEEEE----e-------------CCCcEEEEECCCCeEEEeecc
Q 008717 341 IRRWDVNSGECLHVYEKT----GVGLISCGWFLDGGGIFAG----M-------------TDKSICLWDLDGRELESWKGQ 399 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~----~-------------~dg~i~vwd~~~~~~~~~~~~ 399 (556)
|.+||..+++........ ...+..++++|+|+.+++. + ..+.|..++.. +.+......
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD 170 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC
Confidence 999999888765443321 2345679999999988873 2 13467777766 444444433
Q ss_pred cCCCeeEEEEccCCCEEEEEeCCCeEEEEECC-CCee-----eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 400 KTLRISDMAITDDGKRIISICREAAILLLDRE-ANFE-----RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~-~~~~-----~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
. ..+..++|+|+|+.+++.+.++.|.+||+. ++.. .+..+...+.+++++++|+++++. ++.|.+||.. +
T Consensus 171 ~-~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 171 R-VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp C-SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred C-CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 3 368999999999988777778999999986 3322 122234556789999999866655 8899999986 4
Q ss_pred CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.+..+..+.. +.. ++|.+|+++.|++++.+ .++-++..++.+
T Consensus 247 -~~~~~~~~~~~-~~~--~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 -DELGRVLTPQT-TSN--LCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp -CEEEEEECSSC-CCE--EEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred -CEEEEEECCCC-cee--EEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 67778877665 433 56656899989888876 455566666655
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.72 E-value=4.9e-16 Score=171.24 Aligned_cols=249 Identities=10% Similarity=0.047 Sum_probs=164.9
Q ss_pred cceeEEecccCCc-----EEEEEEccCCCEEEEEeCC---------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC
Q 008717 262 SQTLQILEAHSDE-----VWFLQFSHDGKYLASSSKD---------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327 (556)
Q Consensus 262 ~~~~~~l~~h~~~-----V~~~~~sp~g~~las~s~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 327 (556)
.++...+.+|... ...++|||||++|++++.+ +.+.+||+.++. ...+..|.+.+..++|||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~----~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 46 GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----ECCSSCCCTTEEEEEECS
T ss_pred CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----EEEcccCCCcceeeEECC
Confidence 3445566766643 2447899999999998876 566799998752 234677888999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCce-----------------EEEEEecCCCeEEEEeCCC--------
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGL-----------------ISCGWFLDGGGIFAGMTDK-------- 381 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~i~~~~~~~~l~~~~~dg-------- 381 (556)
||+.||.+. ++.|++|++.+++..+... ++...+ ..+.|+|||+.|+.++.|.
T Consensus 122 dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 122 VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 999999884 6899999998887554221 222222 2489999999999875321
Q ss_pred ----------------------------cEEEEECCC---C---eEEEeec-----ccCCCeeEEEEccCCCEEEEEeC-
Q 008717 382 ----------------------------SICLWDLDG---R---ELESWKG-----QKTLRISDMAITDDGKRIISICR- 421 (556)
Q Consensus 382 ----------------------------~i~vwd~~~---~---~~~~~~~-----~~~~~v~~v~~s~~g~~l~~~~~- 421 (556)
.|++||+.+ + ....+.. .+...+..++|+|||+.++....
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r 280 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR 280 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 488899987 6 4444443 14447899999999997665543
Q ss_pred ---CCeEEEEECCCCe--------eee--eecCCceE-----EEEEcCCCCEEE-EEEc-CC--eEEEEEcCCCCcceeE
Q 008717 422 ---EAAILLLDREANF--------ERW--IEEEEVIT-----SFSLSKDNKYLL-VNLI-NQ--EIHLWSIESDPKLVSR 479 (556)
Q Consensus 422 ---d~~I~i~d~~~~~--------~~~--~~~~~~i~-----~v~~sp~~~~l~-~~~~-dg--~I~lwd~~~~~~~~~~ 479 (556)
+..|.+||+.+++ ... ..+...+. .+.|+|||+.++ ..+. +| .|++||+.++ .. ..
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~-~~ 358 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DC-TF 358 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SC-EE
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ce-Ee
Confidence 2379999998764 112 33454444 789999999877 6653 33 5888898775 43 34
Q ss_pred EeCccCceeEEEEeecCCCCcEEE-EeeC----CC--cEEEEEcCCCce
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIA-SGSE----DS--QNVPEILLSESV 521 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~-sgs~----dg--~v~iwd~~~~~~ 521 (556)
+......+.. .. ++|++.|+ +++. .+ .|+..++.++..
T Consensus 359 lT~g~~~v~~--~~--~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~ 403 (740)
T 4a5s_A 359 ITKGTWEVIG--IE--ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTK 403 (740)
T ss_dssp SCCSSSCEEE--EE--EECSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred cccCCEEEEE--EE--EEeCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence 4433333322 22 23455554 4443 23 455556655443
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=3.3e-16 Score=158.72 Aligned_cols=248 Identities=9% Similarity=-0.017 Sum_probs=164.8
Q ss_pred EEecccCCc-EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEE-------------------EEe
Q 008717 266 QILEAHSDE-VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-------------------VSW 325 (556)
Q Consensus 266 ~~l~~h~~~-V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~ 325 (556)
..+..+... ...+.|+|||++|++++.++.|++||+.++.. . .....+...... +.|
T Consensus 73 ~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 73 VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q--VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E--EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E--EEEecccccCCCCCEEEeccCCcccccccccccc
Confidence 333333333 33478999999999999999999999986532 2 222223332222 356
Q ss_pred CCCCCEEEEE-----eCCCcEEEEECCCCcEEEEEecCCCceEEEEEec-CCCeEEEEeCC------CcEEEEECCCCeE
Q 008717 326 SPNDHQLLTC-----GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTD------KSICLWDLDGREL 393 (556)
Q Consensus 326 s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~ 393 (556)
+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++..++..+.+ ..|.+||+.++..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 7888877654 35668999999988865554 4566789999999 88877776543 3689999987665
Q ss_pred EEeeccc-CCCeeEEEEccCCCEEEEEeCC-----CeEEEEECCCCeeeeeecCCceEEEEEcC-CCCEEEEEE------
Q 008717 394 ESWKGQK-TLRISDMAITDDGKRIISICRE-----AAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNL------ 460 (556)
Q Consensus 394 ~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d-----~~I~i~d~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~------ 460 (556)
..+.... ...+..++|+|+|+.|+.++.+ +.|++||+.++............ +.|+| ||+++++++
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 229 RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC---
T ss_pred eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCccee
Confidence 5554432 2257889999999987776544 45999999888732222222233 89999 999888764
Q ss_pred ----------cCCeEEEEEcCCCCcceeEEeCccCce---------eEEEEeecCCCCcEEEEeeC-CCc--EEEEEcCC
Q 008717 461 ----------INQEIHLWSIESDPKLVSRYKGHKRAR---------FVIRSCFGGFEQAFIASGSE-DSQ--NVPEILLS 518 (556)
Q Consensus 461 ----------~dg~I~lwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~sgs~-dg~--v~iwd~~~ 518 (556)
.+..|++||+.++ +. ..+..+.... ......| +|||+.|+.++. ++. |+.+++.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAK-SA-QKLCKHSTSWDVLDGDRQITHPHPSF-TPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp -------CCCCCCEEEEEETTTT-BC-CEEEECCCCCCCBTTBSSTTCCCCEE-CTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred eccccccccCCCCcEEEEecccC-ce-EEccCCCCccccccccccCCCCCceE-ccCCCeEEEEecCCCCceEEEEEEcc
Confidence 2478999999876 43 4454444310 0122455 999998887765 454 44445555
Q ss_pred Cce
Q 008717 519 ESV 521 (556)
Q Consensus 519 ~~~ 521 (556)
+..
T Consensus 385 ~~~ 387 (396)
T 3c5m_A 385 SYK 387 (396)
T ss_dssp TCC
T ss_pred ccc
Confidence 544
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=7e-16 Score=167.83 Aligned_cols=253 Identities=12% Similarity=-0.010 Sum_probs=172.2
Q ss_pred eeEEecccCCcEE---------EEEEc--cCCCE-EEEEeC-CCcEEEEEee--cCCeeEEEEEecC-----CCCCeEEE
Q 008717 264 TLQILEAHSDEVW---------FLQFS--HDGKY-LASSSK-DQSAIIWEVK--EDGQVSLKHRLSG-----HRKPVFTV 323 (556)
Q Consensus 264 ~~~~l~~h~~~V~---------~~~~s--p~g~~-las~s~-dg~i~iwd~~--~~~~~~~~~~~~~-----h~~~v~~l 323 (556)
..+.+..|...+. ...|+ |||++ |+.++. +..|.+|++. ..+. ...+.. |...+..+
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~ 135 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADP 135 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEE
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCc
Confidence 3455666666655 56665 99998 776654 4445555543 1022 234444 66778999
Q ss_pred EeCCCCCEEEEEeCC----------CcEEEEECCC------CcEEEEEe-cCCCceEEEEEecCCCeEEEEeCC------
Q 008717 324 SWSPNDHQLLTCGQE----------EAIRRWDVNS------GECLHVYE-KTGVGLISCGWFLDGGGIFAGMTD------ 380 (556)
Q Consensus 324 ~~s~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d------ 380 (556)
+|+|||+.|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 999999999998876 5899999988 554 3444 555678889999999999987754
Q ss_pred --CcEEEEECC-CC---eEEEeecccCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCe-eeeeecCCc--------
Q 008717 381 --KSICLWDLD-GR---ELESWKGQKTLRISDMAITDDGKRIISICREA--AILLLDREANF-ERWIEEEEV-------- 443 (556)
Q Consensus 381 --g~i~vwd~~-~~---~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--~I~i~d~~~~~-~~~~~~~~~-------- 443 (556)
..|++||+. ++ ....+...+...+..++|+|||+++++++.++ .|.+||+.++. ..+..+...
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc
Confidence 379999998 45 55566555445899999999999777777787 67777776665 333322221
Q ss_pred -eEEEEEcCCCCEEEEEEcCCeEEEE--EcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC--cEEEEEcCC
Q 008717 444 -ITSFSLSKDNKYLLVNLINQEIHLW--SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--QNVPEILLS 518 (556)
Q Consensus 444 -i~~v~~sp~~~~l~~~~~dg~I~lw--d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg--~v~iwd~~~ 518 (556)
+.+++|+|+++++++++. +.++|| |+.++ .+..+..|...+..+. .+ +.+.-++++++.+. .|+.||+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~-s~-~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAGPWTEWAATL-TV-SGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCSSCCEEEEEE-EE-ETTEEEEEEEETTEEEEEEEEETTT
T ss_pred cCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecCCCCeEEEEE-ec-CCCEEEEEEcCCCCCCEEEEEECCC
Confidence 467899999999999988 999999 54444 4677777765533321 22 33333344445554 566667777
Q ss_pred Cceeeee
Q 008717 519 ESVAAAA 525 (556)
Q Consensus 519 ~~~~~~~ 525 (556)
++.....
T Consensus 370 g~~~~l~ 376 (662)
T 3azo_A 370 GRARTIG 376 (662)
T ss_dssp CCEEEEE
T ss_pred CceEEee
Confidence 7765543
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=9.7e-16 Score=167.62 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=167.7
Q ss_pred ccCCcEEEEEEccCCCEEEE-----EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc----
Q 008717 270 AHSDEVWFLQFSHDGKYLAS-----SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las-----~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 340 (556)
+|...+..++|||||++||. |+.+..|++||+.++.... ...+.. .....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence 46667999999999999994 3445689999998763210 011111 11267899999999999998776
Q ss_pred ---------EEEEECCCCc--EEEEEe--cCCCceEEEEEecCCCeEEEEeCCC----cEEEEECCCCeEEEeecccCCC
Q 008717 341 ---------IRRWDVNSGE--CLHVYE--KTGVGLISCGWFLDGGGIFAGMTDK----SICLWDLDGRELESWKGQKTLR 403 (556)
Q Consensus 341 ---------i~iwd~~~~~--~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~ 403 (556)
|++|++.++. ....+. .+...+..+.|+|||++++.++.++ .|++||..++....+..... .
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~ 273 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-A 273 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-C
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-c
Confidence 9999998876 223333 3445788999999999999887666 68888776666655555444 4
Q ss_pred eeEEEEccCCCEEEEEeC----CCeEEEEECCCCe----eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEEcC-C
Q 008717 404 ISDMAITDDGKRIISICR----EAAILLLDREANF----ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIE-S 472 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~----d~~I~i~d~~~~~----~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~-~ 472 (556)
+....+ ++|. ++..+. ++.|.+||+.++. ..+..+ ...+..++|+ ++.++++...|+..+||.+. +
T Consensus 274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 555556 6666 554443 5789999998764 344443 4458888998 67788888889988888765 3
Q ss_pred CCcceeEEeCc-cCceeEEEEeecCCCCcEEEE----eeCCCcEEEEEcCCCcee
Q 008717 473 DPKLVSRYKGH-KRARFVIRSCFGGFEQAFIAS----GSEDSQNVPEILLSESVA 522 (556)
Q Consensus 473 ~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s----gs~dg~v~iwd~~~~~~~ 522 (556)
+ .....+..+ ...+ ..+.+ +|+++.++. ....++|++||+.+++..
T Consensus 351 g-~~~~~l~~~~~~~v--~~~~~-s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 351 G-KPVRTVQLPGVGAA--SNLMG-LEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp C-CEEEECCCSSSSEE--CCCBS-CTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred C-CeeEEecCCCCeEE--EEeec-CCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 4 455556544 3322 22344 788877663 334578999999987753
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=3.9e-15 Score=148.15 Aligned_cols=224 Identities=12% Similarity=0.131 Sum_probs=156.1
Q ss_pred CcEEEEEEccCCCEEEEEe---------CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---C-
Q 008717 273 DEVWFLQFSHDGKYLASSS---------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---E- 339 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s---------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g- 339 (556)
..+..+++ ||++++... .++.|.+||+.++.. ..+ ..+..+.|||||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----RFI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 35667777 888887642 256788999886532 222 468899999999999988754 2
Q ss_pred -cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC---------------------------CcEEEEECCCC
Q 008717 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---------------------------KSICLWDLDGR 391 (556)
Q Consensus 340 -~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------------------------g~i~vwd~~~~ 391 (556)
.|.+||+.+++.......+ . +..+.|+|||+.|+.++.+ ..|++||+.++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred ceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 4888899888766555443 3 8999999999999887632 57999999887
Q ss_pred eE-EEeecccCCCeeEEEEccCCCEEEEEeCCC---------eEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE
Q 008717 392 EL-ESWKGQKTLRISDMAITDDGKRIISICREA---------AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 392 ~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~---------~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
+. ..+.. . .+..++|+||| +++++..+. .|.++| ++. ..+..+ ..+..+ +|||++|+.++
T Consensus 163 ~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp EEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEE
T ss_pred eEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEE
Confidence 76 55544 2 78899999999 777765542 455556 555 344444 445444 99999998877
Q ss_pred cC--------CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 461 IN--------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 461 ~d--------g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
.+ ..|.+|| ++ +......++...+.. ...| + |+ ++++++.++.+++| +.+++.....
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~-~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~ 298 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQ-AKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIKPIA 298 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEE-EEEE-T-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred ccccCCccccceEEEEC--CC-ceEeccccCCcccCC-ccEE-c-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence 54 3688888 44 444333444444221 1445 7 88 99999999999999 8766654433
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=6.3e-15 Score=146.66 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=152.9
Q ss_pred CcEEEEEEccCCCEEEEEeCC---Cc--EEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---------
Q 008717 273 DEVWFLQFSHDGKYLASSSKD---QS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------- 338 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~d---g~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------- 338 (556)
..+..++|||||++||.++.+ +. |.+|++.++ .. .. +..+.. +..+.|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~--~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SS--KK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EE--EE-EEEESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ce--EE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 467889999999999987654 34 666677653 22 22 222233 9999999999999888742
Q ss_pred ------------------CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC---------cEEEEECCCC
Q 008717 339 ------------------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK---------SICLWDLDGR 391 (556)
Q Consensus 339 ------------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---------~i~vwd~~~~ 391 (556)
..|.+||+.+++.+..+.. . .+..+.|+||| .++++..++ .|.++| ++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~ 208 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DG 208 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TT
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CC
Confidence 5699999998887455554 3 78899999999 777776542 455556 55
Q ss_pred eEEEeecccCCCeeEEEEccCCCEEEEEeCC--------CeEEEEECCCCe-eeee-ecCCceEE-EEEcCCCCEEEEEE
Q 008717 392 ELESWKGQKTLRISDMAITDDGKRIISICRE--------AAILLLDREANF-ERWI-EEEEVITS-FSLSKDNKYLLVNL 460 (556)
Q Consensus 392 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d--------~~I~i~d~~~~~-~~~~-~~~~~i~~-v~~sp~~~~l~~~~ 460 (556)
....+... ..+..+ +|||+.|+.++.+ ..|.+|| ++. ..+. .+...+.. +.|+ ++ ++++++
T Consensus 209 ~~~~l~~~--~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~ 280 (347)
T 2gop_A 209 KEEKMFEK--VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF 280 (347)
T ss_dssp EEEEEEEE--ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred ceEEeccC--cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEe
Confidence 55555443 355554 9999988877754 4688888 444 3332 34567876 8999 88 888999
Q ss_pred cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcE-EEEEcCCCce
Q 008717 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQN-VPEILLSESV 521 (556)
Q Consensus 461 ~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v-~iwd~~~~~~ 521 (556)
.++.++|| +.++ +. ..+..+...+.. +.+ +| .++++++.++.. .+|.+. ++.
T Consensus 281 ~~~~~~l~-~~~g-~~-~~~~~~~~~v~~--~~~-s~--~~~~~~~~~~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 281 EEGSVNLY-IWDG-EI-KPIAKGRHWIMG--FDV-DE--IVVYLKETATRLRELFTWD-GEE 333 (347)
T ss_dssp ETTEEEEE-EESS-SE-EEEECSSSEEEE--EEE-SS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred cCCcEEEE-EcCC-ce-EEEecCCCeEEe--eee-eC--cEEEEEcCCCChHHheEeC-CcE
Confidence 99999999 8854 44 444444444333 455 77 677777777664 777766 543
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=6.7e-15 Score=145.67 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=172.5
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
..|.+++|++++..++..+.++.++.|. + .....+..+...+.+++|+|+++.++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 3467788999888888778889999992 2 244556667778899999999998888888999999999988876
Q ss_pred EEEecCCCceEEEEEecCCCeEEEEeCC----CcEEEEECCCCeEEEeec--ccCCCeeEEEEccCCCEEEEEeC-----
Q 008717 353 HVYEKTGVGLISCGWFLDGGGIFAGMTD----KSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIISICR----- 421 (556)
Q Consensus 353 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~----- 421 (556)
.....+...+.+++|+|+|+.++++..+ +.|.+||.+++....... .....+.+++++|+|+.+++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 5554566779999999999887777666 689999998776553322 22347899999999987776653
Q ss_pred -CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCCcceeEEe-----CccCceeEEEEe
Q 008717 422 -EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYK-----GHKRARFVIRSC 493 (556)
Q Consensus 422 -d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~I~lwd~~~~~~~~~~~~-----~~~~~~~~i~~~ 493 (556)
.+.|..||..+++ ..+......+..++|+|+|++|+++ +.++.|.+||+.+....+..+. ........-.++
T Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred CCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 3567777776655 3333444567899999999866555 4578999999964213332211 001101122345
Q ss_pred ecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 494 FGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 494 ~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+ +++|++.++...++.|.+||...
T Consensus 240 ~-d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 240 I-DSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp E-BTTCCEEEEEETTTEEEEECTTS
T ss_pred E-CCCCCEEEEEcCCCEEEEECCCC
Confidence 5 88999888887889999999853
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=8.7e-15 Score=140.09 Aligned_cols=239 Identities=7% Similarity=-0.058 Sum_probs=168.0
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 274 EVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 274 ~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
...+++++++|++++ +.+.++.|.+|+..+.. .......+...+.+++++++++.+++.. ++.|.+||..++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 54678899999876431 1111123335678899999998666655 889999998765433
Q ss_pred EEEe-cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q 008717 353 HVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (556)
Q Consensus 353 ~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~ 431 (556)
.+. .....+..++++++|+.+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||..
T Consensus 101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp -ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred -eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 332 233568899999999877777778899999875543332222222368899999999977777778899999988
Q ss_pred CCeeee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 432 ANFERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 432 ~~~~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
+..... ......+.+++++++|.++++...++.|.+||..+. ........+.... ..+++ +++|+++++...++
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~p--~~i~~-~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTP--LAVAV-DSDRTVYVADRGND 255 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCSCSCE--EEEEE-CTTCCEEEEEGGGT
T ss_pred CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCCCCCc--eeEEE-CCCCCEEEEECCCC
Confidence 766222 223366899999999977777767889999998765 3222221222222 33555 88999888888999
Q ss_pred cEEEEEcCCCce
Q 008717 510 QNVPEILLSESV 521 (556)
Q Consensus 510 ~v~iwd~~~~~~ 521 (556)
.|+++++...+.
T Consensus 256 ~v~~~~~~~~~~ 267 (270)
T 1rwi_B 256 RVVKLTSLEHHH 267 (270)
T ss_dssp EEEEECCCGGGS
T ss_pred EEEEEcCCCccc
Confidence 999999887654
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=1.5e-13 Score=132.17 Aligned_cols=235 Identities=10% Similarity=0.054 Sum_probs=175.9
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CC
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GV 360 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 360 (556)
.++.|++++.|+.|.+||..++ +.+..+..+. ..+.++.++|+|+.++ +.++.|..||. +|+.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 4678999999999999998776 4556666665 4788999999999888 45778999999 89999988865 35
Q ss_pred ceEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEeecc-----cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 008717 361 GLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQ-----KTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (556)
Q Consensus 361 ~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~ 434 (556)
.+.++.+.++|+.+++.+. ++.|..+|.+++.+..+... +......+++.++|+++++...++.|..||.. ++
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 7889999999999999887 78888888877766555421 11245667889999999999999999999998 65
Q ss_pred -eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC----ceeEEEEeecCCCCcEEEEeeCC-
Q 008717 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSED- 508 (556)
Q Consensus 435 -~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~sgs~d- 508 (556)
.........+.++.+.++|+.++++..++.|..+|..++ +.+.++..+.. ......... .++|.++++....
T Consensus 157 ~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~-~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFP-LQNGGLYICNWQGH 234 (276)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEE-CTTSCEEEEEECTT
T ss_pred EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceE-cCCCCEEEEeccCc
Confidence 333443456777888999999999888889999999988 88888864421 112222333 6789888776311
Q ss_pred -------CcEEEEEc-CCCceeeeec
Q 008717 509 -------SQNVPEIL-LSESVAAAAS 526 (556)
Q Consensus 509 -------g~v~iwd~-~~~~~~~~~~ 526 (556)
+..+++.+ .+++++-...
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cccccccCCceEEEECCCCCEEEEec
Confidence 23456666 3566554443
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=2.5e-13 Score=134.19 Aligned_cols=239 Identities=8% Similarity=-0.042 Sum_probs=165.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
.....+++. +++..++...++.|.+||..++. .+.++. .......++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~---~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK---EVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC---EEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccE---EEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 446777774 45555566678999999998763 334443 3466889999998854444447899999999999988
Q ss_pred EEEecCC-----CceEEEEEecCCCeEEEEe--CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC---
Q 008717 353 HVYEKTG-----VGLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--- 422 (556)
Q Consensus 353 ~~~~~~~-----~~v~~i~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d--- 422 (556)
..+.... .....+++ ++..++++. .++.|.++|+.+.++........ ....++++|+|++++++..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccC
Confidence 7776433 14556777 455555555 48899999999876654443322 57889999999877666554
Q ss_pred -------CeEEEEECCCCe-eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee-E-EeCccCceeEE
Q 008717 423 -------AAILLLDREANF-ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS-R-YKGHKRARFVI 490 (556)
Q Consensus 423 -------~~I~i~d~~~~~-~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~-~-~~~~~~~~~~i 490 (556)
+.|.++|..+++ ...... ...+..++|+|++++|+++.. .|.+||..++ +... . +....... .
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~-~~~~~~~~~~~~~~p--~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD-RVPVRPFLEFRDTKY--Y 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS-SCCSSCSBCCCSSCE--E
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC-ceeeeeeecCCCCce--E
Confidence 789999999887 323322 346899999999999888754 8999999887 4432 1 12112222 2
Q ss_pred EEeecCC-CCcEEEEe----eCCCcEEEEEcCCCceeeeec
Q 008717 491 RSCFGGF-EQAFIASG----SEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 491 ~~~~~s~-~~~~l~sg----s~dg~v~iwd~~~~~~~~~~~ 526 (556)
.+++ +| ++.+.++. ..++.|.+||.. ++++....
T Consensus 271 gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 271 GLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 3455 87 56666665 578999999998 77665543
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=3.6e-13 Score=130.12 Aligned_cols=198 Identities=9% Similarity=0.079 Sum_probs=147.8
Q ss_pred ccCCcEEEEEE-ccCCCEEEEEeC-CCcEEEEEeecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 270 AHSDEVWFLQF-SHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 270 ~h~~~V~~~~~-sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
+|...+..+++ .+++.++++... ++.|.+||.. +. ....+. .+...+.+++++|+|+.+++...++.|.+||.
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 149 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ---FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ 149 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC---EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc---EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence 35567899999 577777666643 8899999943 32 233332 34457899999999998888778899999996
Q ss_pred CCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-CCCeeEEEEccCCCEEEEEeCCC
Q 008717 347 NSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 347 ~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
+++.+..+. .+...+..++++++|+.+++...++.|++||..+..+..+.... ...+..++++++|+++++...++
T Consensus 150 -~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 150 -NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp -TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred -CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 466666664 33456899999999987777778899999999877665554321 23789999999999888887776
Q ss_pred -eEEEEECCCCe-eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 424 -AILLLDREANF-ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 424 -~I~i~d~~~~~-~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.|.+||..... ..+..+ ...+.+++++|+|+++++ +.++.|++|++...
T Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999976544 333332 234779999999986666 67999999998654
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2e-13 Score=149.59 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=147.8
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCc--------
Q 008717 316 HRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS-------- 382 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-------- 382 (556)
|...+..++|||||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998776543 8999999999876543222 22567999999999999988765
Q ss_pred --------EEEEECCCCe---EEEeec-ccCCCeeEEEEccCCCEEEEEeC-----CCeEEEEECCC------C--e-ee
Q 008717 383 --------ICLWDLDGRE---LESWKG-QKTLRISDMAITDDGKRIISICR-----EAAILLLDREA------N--F-ER 436 (556)
Q Consensus 383 --------i~vwd~~~~~---~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~-----d~~I~i~d~~~------~--~-~~ 436 (556)
|++|++.+.. ...... .+...+..+.|+|||++|+.++. +..|++||+.+ + . ..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999997654 222222 22335789999999999887765 57899999986 4 3 44
Q ss_pred eeecCCceEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCCc-ceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCc-
Q 008717 437 WIEEEEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ- 510 (556)
Q Consensus 437 ~~~~~~~i~~v~~sp~~~~l~~~~~d----g~I~lwd~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~- 510 (556)
+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++.. ....+..|......-.+.+ ++++.++++...|+.
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC-VRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE-ETTTEEEEEEEETTEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE-EcCCEEEEEEEECCEE
Confidence 5555555544 588999988877653 3599999987621 3456666654222223455 677888899988985
Q ss_pred -EEEEEcCCCceeeeecCCCc
Q 008717 511 -NVPEILLSESVAAAASSLDN 530 (556)
Q Consensus 511 -v~iwd~~~~~~~~~~~~~~~ 530 (556)
|++|++.+++....+..+.+
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~ 380 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVG 380 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSS
T ss_pred EEEEEECCCCCEEEecCCCCc
Confidence 56677766665444443333
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=3.1e-13 Score=133.67 Aligned_cols=205 Identities=15% Similarity=0.086 Sum_probs=150.7
Q ss_pred CCCeEEEEeCCCCCEEEEEeCC------------------------CcEEEEECCCCcEEEEEe-cCCCceEEEEEecCC
Q 008717 317 RKPVFTVSWSPNDHQLLTCGQE------------------------EAIRRWDVNSGECLHVYE-KTGVGLISCGWFLDG 371 (556)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~ 371 (556)
-+.+.+++++|+|+.+++...+ +.|.+||..+++.+..+. .+-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999998888777 479999999999877665 334568899999999
Q ss_pred CeEEEEeCCCcEEEEECCCC--eEEEee--------cccCCCeeEEEEcc-CCCEEEEEe-CCCeEEEEECCCCeeeeee
Q 008717 372 GGIFAGMTDKSICLWDLDGR--ELESWK--------GQKTLRISDMAITD-DGKRIISIC-REAAILLLDREANFERWIE 439 (556)
Q Consensus 372 ~~l~~~~~dg~i~vwd~~~~--~~~~~~--------~~~~~~v~~v~~s~-~g~~l~~~~-~d~~I~i~d~~~~~~~~~~ 439 (556)
+.+++...++.|++||..+. .+..+. ..+...+..++++| ++..+++.+ .++.|++||..........
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 98888888899999999876 344432 12223689999999 788888876 6899999995544333332
Q ss_pred -c----------CCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCCcceeEEeC--ccCceeEEEEeecCC------CC
Q 008717 440 -E----------EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKG--HKRARFVIRSCFGGF------EQ 499 (556)
Q Consensus 440 -~----------~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~--~~~~~~~i~~~~~s~------~~ 499 (556)
. -..+..++++|+ +.++++...++.|++||..++ +.+..+.. +....+ .+.+ +| +|
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~--~~~~-~pg~~~~~~g 258 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVF--AISY-IPGFLFAVNG 258 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEE--EEEE-ETTEEEEEEC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcc--eeee-cCCEEEEeCC
Confidence 1 123889999998 677777777889999999877 77887753 333333 3555 67 33
Q ss_pred cEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 500 AFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
+..++...+..|++|++.+++++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 33333344568999999998887664
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=3.7e-12 Score=123.31 Aligned_cols=240 Identities=12% Similarity=0.074 Sum_probs=171.9
Q ss_pred ecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
+..+...+.+++++++|+++++...++.|.+||.. + .... .....+...+.+++++++|..+++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 34456789999999999987776668899999987 3 2221 2223355779999999999988887778899999986
Q ss_pred CCcEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee-cccCCCeeEEEEccCCCEEEEEeCCCe
Q 008717 348 SGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAA 424 (556)
Q Consensus 348 ~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~ 424 (556)
++. ..+. .....+..+++.+++..+++...++.|..||. ++...... ......+..++++++|..+++...++.
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 443 3332 24556889999999988777777889999999 44443332 223347899999999988777777789
Q ss_pred EEEEECCCCe-eee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC--ccCceeEEEEeecCCCC
Q 008717 425 ILLLDREANF-ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG--HKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 425 I~i~d~~~~~-~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~ 499 (556)
|..||. +++ ... ......+.+++++++|++.++...++.|.+||. ++ +. ..+.. +.... ..+++ +++|
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~~-~~~~~~~~~~~~--~~i~~-~~~g 236 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-EI-TEFKIPTPNARP--HAITA-GAGI 236 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CE-EEEECSSTTCCE--EEEEE-CSTT
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-cE-EEEECCCCCCCc--eeEEE-CCCC
Confidence 999999 555 222 223456889999999997776666789999998 55 33 33322 22332 33555 8899
Q ss_pred cEEEEeeCCCcEEEEEcCCCce
Q 008717 500 AFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
++.++...++.|..||. ++..
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~ 257 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNII 257 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEE
T ss_pred CEEEeccCCceEEEECC-CCce
Confidence 87766667889999998 4443
No 188
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=1.3e-13 Score=151.82 Aligned_cols=239 Identities=10% Similarity=0.071 Sum_probs=161.4
Q ss_pred cCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc-----
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA----- 340 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~----- 340 (556)
|...+..++|||||++||.++.+ ..|++||+.++..... .+ +...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 44578899999999999987643 4699999987643221 11 1122357899999 99998887654
Q ss_pred ---------EEEEECCCCcE--EEEEecC--CCceEEEEEecCCCeEEEEeCCC-----cEEEEECCCC--e-EEEeecc
Q 008717 341 ---------IRRWDVNSGEC--LHVYEKT--GVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGR--E-LESWKGQ 399 (556)
Q Consensus 341 ---------i~iwd~~~~~~--~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~~--~-~~~~~~~ 399 (556)
|++|++.++.. ...+... ...+..+.|+|||++|+..+.++ .|++||+.++ . ...+...
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 89999987752 3334332 23588999999999988877543 8999999776 4 5555544
Q ss_pred cCCCeeEEEEccCCCEEEEEeCC----CeEEEEECCCC--e-eeeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 400 KTLRISDMAITDDGKRIISICRE----AAILLLDREAN--F-ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 400 ~~~~v~~v~~s~~g~~l~~~~~d----~~I~i~d~~~~--~-~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
.. .+... ++|+|+.|+..+.+ +.|.+||+.+. . ..+.. +...+..++++ ++.++++...|+..+||.+.
T Consensus 316 ~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 316 LK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred CC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 43 34444 35899988887764 45999999874 3 33333 34456678887 56677888889987777654
Q ss_pred -CCCcceeEEeCc-cCceeEEEEeecCCCCcEEEE----eeCCCcEEEEEcCCCce
Q 008717 472 -SDPKLVSRYKGH-KRARFVIRSCFGGFEQAFIAS----GSEDSQNVPEILLSESV 521 (556)
Q Consensus 472 -~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s----gs~dg~v~iwd~~~~~~ 521 (556)
++ .....+..+ ...+ ..+.+ +|+++.|+. ....++|+.||+.+++.
T Consensus 393 ~~g-~~~~~l~~~~~~~v--~~~~~-s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDG-KPAGAVSLPGIGSA--SGLSG-RPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTS-CEEEECBCSSSCEE--EEEEC-CBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCC-CceeeccCCCCeEE--EEeec-CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 33 455555543 3332 22444 788876552 23357899999988764
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.2e-12 Score=126.08 Aligned_cols=241 Identities=10% Similarity=0.077 Sum_probs=165.6
Q ss_pred cccCCcEEEEEEccCCCEEEE-------EeCCCcEEEEEeecCCeeEEEEE--ecCCCCCeEEEEeCCC-CCEEEEEeCC
Q 008717 269 EAHSDEVWFLQFSHDGKYLAS-------SSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPN-DHQLLTCGQE 338 (556)
Q Consensus 269 ~~h~~~V~~~~~sp~g~~las-------~s~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~l~~s~~-~~~l~s~~~d 338 (556)
...-....+++|+++|.++++ +..++.|.+||..++. ...... ..++...+.+++++++ ++.+++. ..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-KTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-EEEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-EEEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence 334456789999999988887 5778899999976543 221111 0124467899999999 6655544 44
Q ss_pred CcEEEEECCCCcEEEE-Eec----CCCceEEEEEecCCCeEEEEeCC---------------CcEEEEECCCCeEEEeec
Q 008717 339 EAIRRWDVNSGECLHV-YEK----TGVGLISCGWFLDGGGIFAGMTD---------------KSICLWDLDGRELESWKG 398 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~ 398 (556)
+.|.+||.. ++.... ... ....+.+++++++|+.+++...+ +.|..||.. +.......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 579999998 765433 221 12357899999999877776654 568888876 44433332
Q ss_pred ccCCCeeEEEEc----cCCCEEEEE-eCCCeEEEEECC-CCe----eeeee---cC-CceEEEEEcCCCCEEEEEEcCCe
Q 008717 399 QKTLRISDMAIT----DDGKRIISI-CREAAILLLDRE-ANF----ERWIE---EE-EVITSFSLSKDNKYLLVNLINQE 464 (556)
Q Consensus 399 ~~~~~v~~v~~s----~~g~~l~~~-~~d~~I~i~d~~-~~~----~~~~~---~~-~~i~~v~~sp~~~~l~~~~~dg~ 464 (556)
.. .....++++ |+++.++++ ..++.|.+||.. ++. ..+.. +. ..+..++++++|+++++...++.
T Consensus 170 ~~-~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AF-QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EE-SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CC-CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 22 257899999 999765554 567899999986 343 11111 22 56889999999998888878899
Q ss_pred EEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEE-EeeCCCcEEEEEcCC
Q 008717 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDSQNVPEILLS 518 (556)
Q Consensus 465 I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-sgs~dg~v~iwd~~~ 518 (556)
|.+||..++ +.+..+..+...+ ..+++ +++++.|+ +...++.|..|++..
T Consensus 249 i~~~d~~~g-~~~~~~~~~~~~~--~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG-QPKMRIRCPFEKP--SNLHF-KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB-SCSEEEECSSSCE--EEEEE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC-cEeEEEeCCCCCc--eeEEE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998866 6667776664443 33566 89999554 445678999999875
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=1.4e-11 Score=129.99 Aligned_cols=273 Identities=10% Similarity=0.015 Sum_probs=182.6
Q ss_pred CCCCceeeecCCCCCCCCCCcceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEee--cCCeeEEEEEecCCCCC
Q 008717 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGHRKP 319 (556)
Q Consensus 242 ~~~~~~~~~~d~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~--~~~~~~~~~~~~~h~~~ 319 (556)
..+..+.+++..+ .+.+..+.. ...+..+.|||||+++++++.|+.|.+||+. +. +....+.... .
T Consensus 174 ~~~~~V~viD~~t-------~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G~-~ 241 (567)
T 1qks_A 174 RDAGQIALIDGST-------YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIGS-E 241 (567)
T ss_dssp TTTTEEEEEETTT-------CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECCS-E
T ss_pred CCCCeEEEEECCC-------CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecCC-C
Confidence 3444555554332 345555543 3356799999999999999999999999995 43 3445555433 3
Q ss_pred eEEEEeC----CCCCEEEEEeC-CCcEEEEECCCCcEEEEEecC------------------------------------
Q 008717 320 VFTVSWS----PNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT------------------------------------ 358 (556)
Q Consensus 320 v~~l~~s----~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------------------------------------ 358 (556)
...++|+ |||+++++++. +++|.++|..+.+.+..+...
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 5789999 69999888776 589999999888877665421
Q ss_pred -------------------CCceEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEeecc-cC--CCeeEEE-EccCCC
Q 008717 359 -------------------GVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ-KT--LRISDMA-ITDDGK 414 (556)
Q Consensus 359 -------------------~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~~--~~v~~v~-~s~~g~ 414 (556)
.....++.|+|++++++++. .++.|.++|+.++++...... .. .+-.... ++|++.
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 00123567999999987766 578899999998776543322 11 0111222 578755
Q ss_pred EEE-EEe-CCCeEEEEECCC-------Ce-eeeee-cCCceEEEEEcCCCCEEEEEEc-------CCeEEEEEcCCC---
Q 008717 415 RII-SIC-REAAILLLDREA-------NF-ERWIE-EEEVITSFSLSKDNKYLLVNLI-------NQEIHLWSIESD--- 473 (556)
Q Consensus 415 ~l~-~~~-~d~~I~i~d~~~-------~~-~~~~~-~~~~i~~v~~sp~~~~l~~~~~-------dg~I~lwd~~~~--- 473 (556)
.+. ++. .++.|.++|..+ .+ ...+. ....-..+..+|+++++.+... .+.|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 481 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD 481 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence 544 443 468999999987 33 22322 2223344778999999998763 358999999765
Q ss_pred --CcceeEEeC-----c-cCceeEEEEeecCCCCcEEEEee-----CCCcEEEEEcCCCceeeeecC
Q 008717 474 --PKLVSRYKG-----H-KRARFVIRSCFGGFEQAFIASGS-----EDSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 474 --~~~~~~~~~-----~-~~~~~~i~~~~~s~~~~~l~sgs-----~dg~v~iwd~~~~~~~~~~~~ 527 (556)
.+.+..+.. - ..........| +++|+++..+. .++.|.|+|..+.++......
T Consensus 482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 482 GSDPEFKTLPIAEWAGITEGQPRVVQGEF-NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp SSCCCEEEECHHHHHTCCSSCCEEEEEEE-CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccCCCcEEeccccccccCCCCcceEeeeE-CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 222233321 0 12234566777 99999887763 379999999999998877764
No 191
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=4.1e-12 Score=129.31 Aligned_cols=236 Identities=10% Similarity=0.058 Sum_probs=163.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC--cEEEEECCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGE 350 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~ 350 (556)
...+.++|+++|+++++...++.|++||..++ . ....... ..... ++|+++++.|+++..++ .|.+|+..++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~--~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-K--VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT-E--EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC-E--EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998787777899999999754 2 2222222 22333 99999999999988866 79999987665
Q ss_pred EEEEE----ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe----ecccCCCe-e-EEEEccC-CCEEEEE
Q 008717 351 CLHVY----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW----KGQKTLRI-S-DMAITDD-GKRIISI 419 (556)
Q Consensus 351 ~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v-~-~v~~s~~-g~~l~~~ 419 (556)
....+ ......+.+++++|++..|+++..++.|+.||..++....+ ........ . .++|+|+ +..+++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 44444 22445678899999656666677888999999987655444 22221112 3 9999995 5555666
Q ss_pred eCCCeEEEEECCCCeeeeeecC---------------CceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCc
Q 008717 420 CREAAILLLDREANFERWIEEE---------------EVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 420 ~~d~~I~i~d~~~~~~~~~~~~---------------~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
..++.|+.||.......+.++. .....++++|+|+++++-. .++.|+.||+.++ . +.++.++
T Consensus 286 ~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEEEC
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEeCC
Confidence 6778999999876543333332 3478999999999777777 7889999998776 3 4555544
Q ss_pred cC-------------ceeEEEEeecCCCCcEEEEeeCCCcEEEEEc
Q 008717 484 KR-------------ARFVIRSCFGGFEQAFIASGSEDSQNVPEIL 516 (556)
Q Consensus 484 ~~-------------~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~ 516 (556)
.. -.....+++ +++|.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giav-d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICY-DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence 10 011233455 777777777777777777664
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=3.1e-13 Score=147.71 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=151.5
Q ss_pred cCCCEEEEEeCCC---cEEEEEeec-CCeeEEEEEe----cCCCCCeEEEEeCCCCCEEEE-----EeCCCcEEEEECCC
Q 008717 282 HDGKYLASSSKDQ---SAIIWEVKE-DGQVSLKHRL----SGHRKPVFTVSWSPNDHQLLT-----CGQEEAIRRWDVNS 348 (556)
Q Consensus 282 p~g~~las~s~dg---~i~iwd~~~-~~~~~~~~~~----~~h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~ 348 (556)
|+|++++....++ .-.+|-... ++....+... .+|...+..++|||||++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788777665543 355665542 2222222211 245557899999999999984 34456899999999
Q ss_pred CcEE-EEEecCCCceEEEEEecCCCeEEEEeCCCc-------------EEEEECCCCeE--EEee--cccCCCeeEEEEc
Q 008717 349 GECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKS-------------ICLWDLDGREL--ESWK--GQKTLRISDMAIT 410 (556)
Q Consensus 349 ~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~~--~~~~--~~~~~~v~~v~~s 410 (556)
++.+ .. .........++|+|||+.|+.++.|.. |++|++.+... ..+. ..+...+..+.|+
T Consensus 157 g~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 157 GEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp CCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 8864 11 111111267899999999999988776 99999986541 1222 2222368899999
Q ss_pred cCCCEEEEEeCCC----eEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEc----CCeEEEEEcCCCCcc--eeE
Q 008717 411 DDGKRIISICREA----AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI----NQEIHLWSIESDPKL--VSR 479 (556)
Q Consensus 411 ~~g~~l~~~~~d~----~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~----dg~I~lwd~~~~~~~--~~~ 479 (556)
|||++|+.++.++ .|++||..++. ..+..+...+....+ ++|. ++..+. ++.|.+||+.++ .. ...
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~-~~~~~~~ 312 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP-ARASWKE 312 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC-SGGGCEE
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC-CccCCeE
Confidence 9999988877666 68888766555 555566666666666 6666 555443 578999999776 32 344
Q ss_pred EeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+..+........+.+ + ++.++++...|+..++|.+.
T Consensus 313 l~~~~~~~~l~~~~~-~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 313 IVPEDSSASLLSVSI-V-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EECCCSSCEEEEEEE-E-TTEEEEEEEETTEEEEEEEE
T ss_pred EecCCCCCeEEEEEE-E-CCEEEEEEEECCEEEEEEEe
Confidence 444432222223455 4 77889999999988888654
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=2e-11 Score=122.43 Aligned_cols=246 Identities=10% Similarity=-0.068 Sum_probs=167.5
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEEe
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSW 325 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~ 325 (556)
+.+..+.....+ .+++||||++++.+. .++.|.+||..+.. ....+... ......+.|
T Consensus 58 ~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc---EEEEEECCCccccccCCCccceEE
Confidence 344555544444 899999999998875 36789999997653 22332211 123457899
Q ss_pred CCCCCEEEEEeC--CCcEEEEECCCCcEEEE-EecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEee----
Q 008717 326 SPNDHQLLTCGQ--EEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWK---- 397 (556)
Q Consensus 326 s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---- 397 (556)
+|||++|++++. ++.|.++| .+++.+.. +.... ++.+.|++ ..+++.+.||.+.++|. ++......
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 999999999875 47899999 99998877 54322 24455655 45666778999999999 55443211
Q ss_pred --cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCee---eeee-----------cCCceEEEEEcCCCCEEEEEEc
Q 008717 398 --GQKTLRISDMAITDDGKRIISICREAAILLLDREANFE---RWIE-----------EEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 398 --~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~---~~~~-----------~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
...........+.+++..++..+..+.+.+.|+.+... .... .......+.++|+++.++++..
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 11111123356677776665556788999999976531 1110 0122344789999998888653
Q ss_pred ----------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEee-CCCcEEEEEcCCCceeee
Q 008717 462 ----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQNVPEILLSESVAAA 524 (556)
Q Consensus 462 ----------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~ 524 (556)
.+.|.++|+.+. +.+.++.....+ ..+.+ +|||+ +++++. .++.|.+||..+++.+..
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~~p---~~i~~-s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHDV---DAISV-AQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCcccccCCCCeEEEEECCCC-EEEEEEECCCCc---CeEEE-CCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 357999999998 888888644332 33556 99999 777777 589999999999998876
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=6.9e-12 Score=132.37 Aligned_cols=227 Identities=13% Similarity=0.077 Sum_probs=166.0
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC--CCcEEEEEecCC
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTG 359 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 359 (556)
|.+.++++...+++|.++|..++ +.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~---~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY---EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC---CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCceEEEEeCCCCeEEEEECCCC---eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence 34456677778999999999876 344455433 356799999999999999999999999996 888888877543
Q ss_pred CceEEEEEe----cCCCeEEEEeC-CCcEEEEECCCCeEEEeecc-----------cCCCeeEEEEccCCCE-EEEEeCC
Q 008717 360 VGLISCGWF----LDGGGIFAGMT-DKSICLWDLDGRELESWKGQ-----------KTLRISDMAITDDGKR-IISICRE 422 (556)
Q Consensus 360 ~~v~~i~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~-l~~~~~d 422 (556)
....++|+ |||+++++++. ++.|.++|..+.++...... ....+..+..++++.. ++....+
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 46789999 69999888765 58999999987555433221 1226788888988765 4455567
Q ss_pred CeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeC-----ccCceeEEEEe
Q 008717 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG-----HKRARFVIRSC 493 (556)
Q Consensus 423 ~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~-----~~~~~~~i~~~ 493 (556)
|.|.++|..+.. ...+........+.|+|+|++++++. .++.|.++|+.++ +++..+.. |.+. .. .
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~--g~--~ 394 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGR--GA--N 394 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTT--CE--E
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcc--ce--e
Confidence 999999998754 33344555677899999999988776 4788999999998 77766654 3221 12 2
Q ss_pred ecCCCCcEE-EEee-CCCcEEEEEcCC
Q 008717 494 FGGFEQAFI-ASGS-EDSQNVPEILLS 518 (556)
Q Consensus 494 ~~s~~~~~l-~sgs-~dg~v~iwd~~~ 518 (556)
|++|++..+ +++. .++.|.++|..+
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 337875444 4443 468999999987
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=5.9e-11 Score=114.75 Aligned_cols=236 Identities=11% Similarity=0.028 Sum_probs=165.1
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
+...+.+++++++|.++++...++.|..|+.. +.... ..+......+.++++.+++..+++...++.|.+||. +++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 45789999999999988877778889999875 22222 223334567899999999988888777889999998 665
Q ss_pred EEEEE-ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe-ecccCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q 008717 351 CLHVY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISDMAITDDGKRIISICREAAILLL 428 (556)
Q Consensus 351 ~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~ 428 (556)
..... ......+..+++.++|+.+++...++.|..||. ++.+... .......+..++++++|..+++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 44322 223456889999999987777767789999999 5555443 22223468899999999977776678899999
Q ss_pred ECCCCe-eee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe--CccCceeEEEEeecCCCCcEEE
Q 008717 429 DREANF-ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK--GHKRARFVIRSCFGGFEQAFIA 503 (556)
Q Consensus 429 d~~~~~-~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~ 503 (556)
|. ++. ... ......+.+++++++|+++++...++.|..||. ++ . +..+. .+...... +.+ ++|.+.+
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~-~~~~~~~~~~~~~~~--i~~--~~g~l~v 281 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN-I-IEEYPIQIKSAEPHG--ICF--DGETIWF 281 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT-E-EEEEECSSSSCCEEE--EEE--CSSCEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC-c-eEEEeCCCCCCccce--EEe--cCCCEEE
Confidence 99 655 222 123467899999999986666656789999998 44 3 33442 22333322 333 6787666
Q ss_pred EeeCCCcEEEEEcCCCc
Q 008717 504 SGSEDSQNVPEILLSES 520 (556)
Q Consensus 504 sgs~dg~v~iwd~~~~~ 520 (556)
+.+ .+.|..++..+++
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 554 6778888877654
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=2.1e-12 Score=125.40 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=142.1
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC-CCCCeEEEEeCCCCCEEEEE----e---
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG-HRKPVFTVSWSPNDHQLLTC----G--- 336 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~----~--- 336 (556)
...+..+...+.+++++|+|+++++...++.|.+||..++........... ....+..++++|+|+++++. +
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 556666778899999999999888777778999999865532111111111 12346789999999988873 2
Q ss_pred ----------CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC-CCeE---EEeecccCC
Q 008717 337 ----------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GREL---ESWKGQKTL 402 (556)
Q Consensus 337 ----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~ 402 (556)
..+.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+||+. .+.+ .........
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred cccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 12456666654 443 4445556667899999999999777778999999996 3433 222233344
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCCceEEEEE-cCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 403 RISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSL-SKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.+..++++++|+++++. ++.|.+||..... ..+..+.. +++++| +|+++.|++++.+ .+.-++..+.
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 67899999999866655 8899999997554 33444445 899999 6899999998865 4555566554
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=1.5e-12 Score=125.08 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=150.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeE
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD 406 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 406 (556)
.++.|++++.++.|.+||..+|+.+..+..+. ..+.++.+.|+|+.++ +.++.|..||..++.+..+.......+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 46789999999999999999999999998765 4688999999999888 45778999999666666666543346889
Q ss_pred EEEccCCCEEEEEeC-CCeEEEEECCCCeeeeee-------cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee
Q 008717 407 MAITDDGKRIISICR-EAAILLLDREANFERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (556)
Q Consensus 407 v~~s~~g~~l~~~~~-d~~I~i~d~~~~~~~~~~-------~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~ 478 (556)
+.+.++|+.+++.+. ++.|..+|.......... +......+++.++|+++++...++.|..||.. + +.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CEEE
Confidence 999999999999887 788888887444322211 11235567889999999999999999999987 7 8888
Q ss_pred EEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
++...... +. +.. .++|+++++++.++.|+.+|..+++++....
T Consensus 160 ~~~~~~~~-~~--~~~-~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 160 SVKLSGTP-FS--SAF-LDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEECSSCC-CE--EEE-CTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEECCCCc-cc--eeE-cCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 88765433 22 344 6899999999999999999999888866553
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=9e-11 Score=113.52 Aligned_cols=239 Identities=11% Similarity=0.067 Sum_probs=169.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
.....+.++++.++|+..++...++.|.+||.. + .... ..+..+...+.++++.++++.+++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 345688999999999988877778999999977 3 3222 2233445678999999999888877667899999987 6
Q ss_pred cEEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEee-cccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 350 ECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 350 ~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
+.. .+. .....+.++++.++++.+++...++.|..||.. +....+. ......+.+++++++|+.+++...++.|.
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 543 332 234668899999999887777768899999988 4443332 22334789999999999766666678999
Q ss_pred EEECCCCe-eeee--ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeE-EeCccCceeEEEEeecCCCCcEE
Q 008717 427 LLDREANF-ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGFEQAFI 502 (556)
Q Consensus 427 i~d~~~~~-~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l 502 (556)
.||. ++. ..+. .....+..++++++|++.++....+.|.+||. ++ ..... ...+.... ..+++ +++|++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~--~~i~~-d~~g~l~ 244 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG-EISEYDIPTPNARP--HAITA-GKNSEIW 244 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCE--EEEEE-CSTTCEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC-cEEEEECCCCCCCc--eEEEE-CCCCCEE
Confidence 9998 444 3222 23456889999999987776666778999998 44 33222 22222332 33455 8889877
Q ss_pred EEeeCCCcEEEEEcCCCce
Q 008717 503 ASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 503 ~sgs~dg~v~iwd~~~~~~ 521 (556)
++...++.|..|+. ++..
T Consensus 245 v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp EEETTTTEEEEECT-TSCE
T ss_pred EeccCCCeEEEECC-CCcE
Confidence 76666789999998 4444
No 199
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.50 E-value=3.5e-12 Score=127.68 Aligned_cols=235 Identities=7% Similarity=-0.027 Sum_probs=159.6
Q ss_pred CCCEEEEEe------CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC----------CCcEEEEEC
Q 008717 283 DGKYLASSS------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDV 346 (556)
Q Consensus 283 ~g~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~ 346 (556)
++++++... .|+.|.+||..++ +....+..+..+ .++|+||++++++++. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNG---KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTC---CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCC---eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 455555442 4789999998765 344556666555 8999999999998863 567999999
Q ss_pred CCCcEEEEEecC------CCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEe-ecccCCCeeEEEEccCC-CEE
Q 008717 347 NSGECLHVYEKT------GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESW-KGQKTLRISDMAITDDG-KRI 416 (556)
Q Consensus 347 ~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~s~~g-~~l 416 (556)
.+++.+..+... ......++++|||++++++.. ++.|.+||+.+.++... .... ....+.+.|++ ..+
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSF 166 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeE
Confidence 999988887643 234567899999999999874 57899999998776554 3332 33446677876 577
Q ss_pred EEEeCCCeEEEEECCC-Ceee-e------eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc-ceeEEeCcc---
Q 008717 417 ISICREAAILLLDREA-NFER-W------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGHK--- 484 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~-~~~~-~------~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~-~~~~~~~~~--- 484 (556)
++.+.||.+.+|+... ++.. . .........+.++|++..++..+.++.|.++|+..... .+..+....
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 8889999999999865 3321 1 11111112334567788888888899999999875411 122221100
Q ss_pred -------CceeEEEEeecCCCCcEEEEeeC-----------CCcEEEEEcCCCceeeeecC
Q 008717 485 -------RARFVIRSCFGGFEQAFIASGSE-----------DSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 485 -------~~~~~i~~~~~s~~~~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~~ 527 (556)
..... ..+ +|+++.++++.. .+.|.+||+.+++.+.....
T Consensus 247 ~~~~~~p~g~~~--~a~-~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~ 304 (361)
T 2oiz_A 247 KAKNWVPGGYNL--VGL-HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG 304 (361)
T ss_dssp HHTTCEECCSSC--EEE-ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC
T ss_pred cccccccCCeeE--EEE-ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec
Confidence 00001 344 889888776643 34899999999988776543
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=5.6e-11 Score=115.50 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=154.6
Q ss_pred ecccCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 008717 268 LEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (556)
Q Consensus 268 l~~h~~~V~~~~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (556)
+..+..-..+..|+|++ .++++...++.|..||..++.. ..+ .....+.+++++++|+++++ . ++.|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 33444556688999954 4556666788999999885422 122 24567999999999995554 3 568999999
Q ss_pred CCCcEEEEEec----CCCceEEEEEecCCCeEEEEeC-----------CCcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 347 NSGECLHVYEK----TGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 347 ~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
.+++....... ....+..++++|+|+++++... .+.|+.+|..+ ......... ...+.++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-DISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE-SBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc-ccccceEEcC
Confidence 88875433322 1345788999999996665432 23455555443 332222222 2578999999
Q ss_pred CCCEEE-EEeCCCeEEEEECC--CCe----eeee---ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 412 DGKRII-SICREAAILLLDRE--ANF----ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 412 ~g~~l~-~~~~d~~I~i~d~~--~~~----~~~~---~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
+++.++ +.+.++.|.+||+. ++. ..+. .....+..++++++|++.++...++.|..||..++ +.+..+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEE
Confidence 998765 45567899999973 443 1111 22356889999999988877777889999999887 7888887
Q ss_pred CccCceeEEEEeecCCCCcEEEEeeC
Q 008717 482 GHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
.+...+ ..++|..|+++.|+.++.
T Consensus 238 ~p~~~~--t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKT--TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBE--EEEEEESGGGCEEEEEEB
T ss_pred CCCCCc--eEEEEeCCCCCEEEEEcC
Confidence 765543 347774588887665554
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.48 E-value=1.1e-11 Score=123.06 Aligned_cols=253 Identities=8% Similarity=0.025 Sum_probs=170.9
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVS 324 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~ 324 (556)
.+.+..+..-..+ . ++++|||+++++++ .++.|.+||..+.. ....+.-. ......+.
T Consensus 69 ~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~---v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 69 GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL---PTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGEE
T ss_pred CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe---EEEEEECCCccccccCCCCceEE
Confidence 4556666654555 4 99999999887765 36789999998763 33333211 12355789
Q ss_pred eCCCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeeccc-
Q 008717 325 WSPNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQK- 400 (556)
Q Consensus 325 ~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~- 400 (556)
|+|||++++++.. ++.|.++|+.+++.+.++..... ...+......+++.+.||.+.+.++.. +.+.......
T Consensus 144 ~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~ 220 (386)
T 3sjl_D 144 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF 220 (386)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee
Confidence 9999999998874 68999999999999988864321 223333556777888899999999864 4432211111
Q ss_pred ---CCCe-eEEEEc-cCCCEEEEEeCCCeEEEEECCCCeee----ee--e--------cCCceEEEEEcCCCCEEEEEEc
Q 008717 401 ---TLRI-SDMAIT-DDGKRIISICREAAILLLDREANFER----WI--E--------EEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 401 ---~~~v-~~v~~s-~~g~~l~~~~~d~~I~i~d~~~~~~~----~~--~--------~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
...+ ....|. ++|++++ .+.+|.|++.|..+.... .. . ....+..++++|+++.+++...
T Consensus 221 ~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~ 299 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 299 (386)
T ss_dssp SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence 1122 224664 6775444 667899999999776411 11 0 1223445788999998888753
Q ss_pred ----------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEe-eCCCcEEEEEcCCCceeeeecCC
Q 008717 462 ----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASG-SEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 462 ----------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sg-s~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
.+.|.++|+.+. +.+.++.... .. ..+.+ ++|++ +|+++ ..++.|.++|..+++++......
T Consensus 300 ~~~~~~hk~~~~~V~viD~~t~-kv~~~i~vg~-~~--~~lav-s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 300 QRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH-EI--DSINV-SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-EE--CEEEE-CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred cccccccCCCCCEEEEEECCCC-eEEEEEECCC-Cc--ceEEE-CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 257999999998 8888875433 22 23555 89987 66665 45899999999999998776543
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=2.4e-12 Score=122.98 Aligned_cols=198 Identities=5% Similarity=-0.055 Sum_probs=147.0
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
+...+.+++++++|+++++.. ++.|.+||..... . ..+. .....+..++++++|+.+++...++.|.+|+..+.
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 139 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-Q---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK 139 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-C---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-E---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc
Confidence 345688999999999666655 8899999976432 1 2222 23356899999999998777777889999987655
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
............+.+++++++|+.+++...++.|.+||..+.............+.+++++++|..+++...++.|.+||
T Consensus 140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 44332222334578899999998777776778999999987665444333324789999999998777777788999999
Q ss_pred CCCCeeeee--ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 430 REANFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 430 ~~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
..+...... .+...+.+++++++|+++++...++.|+++++...
T Consensus 220 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 220 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 977652222 22356899999999998888888999999998764
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=5.1e-12 Score=137.90 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=159.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEe-----CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCc----
Q 008717 270 AHSDEVWFLQFSHDGKYLASSS-----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 340 (556)
+|...+..++|||||++||.+. ....|++||+.++..... .+... ....++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 4666799999999999998542 235799999997643221 22211 13467899 9999999887743
Q ss_pred ---------EEEEECCCCcE--EEEEe--c-CCCceEEEEEecCCCeEEEEeC----CCcEEEEECCCC--eEEEeeccc
Q 008717 341 ---------IRRWDVNSGEC--LHVYE--K-TGVGLISCGWFLDGGGIFAGMT----DKSICLWDLDGR--ELESWKGQK 400 (556)
Q Consensus 341 ---------i~iwd~~~~~~--~~~~~--~-~~~~v~~i~~~~~~~~l~~~~~----dg~i~vwd~~~~--~~~~~~~~~ 400 (556)
|++|++.++.. ...+. . +...+..+.|+|||++++.... ++.|+++|+.+. ....+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999987642 33333 2 3445788999999998866442 248999999754 455555444
Q ss_pred CCCeeEEEEccCCCEEEEEeC----CCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEcCC---eEEEEE
Q 008717 401 TLRISDMAITDDGKRIISICR----EAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWS 469 (556)
Q Consensus 401 ~~~v~~v~~s~~g~~l~~~~~----d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~I~lwd 469 (556)
. ..... ++++|..|+..+. .+.|..+|+.++. ..+..+...+. .|++++++|+....++ .|++||
T Consensus 281 ~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 281 D-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp S-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred C-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 3 34444 6777776665543 2679999998764 35566666554 8999999888776554 689999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC----CcEEEEEcCCCcee
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED----SQNVPEILLSESVA 522 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d----g~v~iwd~~~~~~~ 522 (556)
+.++ ....+...... .+....+ +++++.|+....+ +.|+.||+.+++..
T Consensus 357 ~~g~--~~~~l~~p~~~-~~~~~~~-~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 357 YEGK--RVREVALPGLG-SVSGFNG-KHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TTSC--EEEEECCSSSS-EEEECCC-CTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCC--eeEEeecCCCc-eEEeeec-CCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8754 34444322211 2222344 6787766655444 88999999887654
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=1.2e-11 Score=122.02 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=152.5
Q ss_pred CCCcEEEEEeecCCeeEEEEEec------CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEE
Q 008717 292 KDQSAIIWEVKEDGQVSLKHRLS------GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (556)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 365 (556)
.+++|.+||..++ +....+. ........+.+. +++.+++...++.|.+||..+++.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~---~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATC---EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTT---EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCC---EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence 4889999999875 2222221 112345677774 34455555667899999999999988885 34567899
Q ss_pred EEecCCCeEEEEe-CCCcEEEEECCCCeEEEeec-ccC----CCeeEEEEccCCCEEEEEe--CCCeEEEEECCCCe-ee
Q 008717 366 GWFLDGGGIFAGM-TDKSICLWDLDGRELESWKG-QKT----LRISDMAITDDGKRIISIC--REAAILLLDREANF-ER 436 (556)
Q Consensus 366 ~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~-~~~----~~v~~v~~s~~g~~l~~~~--~d~~I~i~d~~~~~-~~ 436 (556)
++++++ .++++. .++.|.+||..+.++..... ... ..+..+++ . +..++++. .++.|.+||..+++ ..
T Consensus 90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 999998 455555 88999999999877654332 220 14567777 4 44555544 48899999999988 44
Q ss_pred eeecCCceEEEEEcCCCCEEEEEEcC----------CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 437 WIEEEEVITSFSLSKDNKYLLVNLIN----------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 437 ~~~~~~~i~~v~~sp~~~~l~~~~~d----------g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
.+........+.++|+|++++++..+ +.|.+||..++ +....+...... ....+++ +|+++.|+++.
T Consensus 167 ~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~-~p~~la~-~~d~~~lyv~~ 243 (328)
T 3dsm_A 167 ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGD-WPSEVQL-NGTRDTLYWIN 243 (328)
T ss_dssp EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTC-CCEEEEE-CTTSCEEEEES
T ss_pred EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCC-CceeEEE-ecCCCEEEEEc
Confidence 44445556789999999977776554 78999999887 776666532211 1133566 89999988876
Q ss_pred CCCcEEEEEcCCCcee
Q 008717 507 EDSQNVPEILLSESVA 522 (556)
Q Consensus 507 ~dg~v~iwd~~~~~~~ 522 (556)
. .|++||..++++.
T Consensus 244 ~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 244 N--DIWRMPVEADRVP 257 (328)
T ss_dssp S--SEEEEETTCSSCC
T ss_pred c--EEEEEECCCCcee
Confidence 5 8999999888764
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.46 E-value=1.6e-11 Score=119.91 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=160.4
Q ss_pred ceeEEecccCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
..+..+..+........|+|+|+ +++++..++.|..|+.. + .. ..+..+...+..++++++|+.+++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TV---DVLLDATAFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CE---EEEEESCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CE---EEEeCCCCccceeeECCCCCEEEEECCCCEE
Confidence 34444555566678899999998 56667778899999873 3 22 3344456778999999999977665566789
Q ss_pred EEEECCCCcEEEEEecC----CCceEEEEEecCCCeEEE----EeC-------------CCcEEEEECCCCeEEEeeccc
Q 008717 342 RRWDVNSGECLHVYEKT----GVGLISCGWFLDGGGIFA----GMT-------------DKSICLWDLDGRELESWKGQK 400 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~ 400 (556)
.+|+.. ++........ ...+..+++.|+|+..++ |.. .+.|+.||..++++.... .
T Consensus 110 ~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~ 186 (305)
T 3dr2_A 110 TRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D 186 (305)
T ss_dssp EEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred EEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence 999986 6543322211 234677999999998776 332 256888888666555444 2
Q ss_pred CCCeeEEEEccCCCEEEEEeCC------CeEEEEECCCCe---eeee--ecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 401 TLRISDMAITDDGKRIISICRE------AAILLLDREANF---ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 401 ~~~v~~v~~s~~g~~l~~~~~d------~~I~i~d~~~~~---~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
......++|+||++.++.+... +.|.+||+.... .... .....+..++++++|++. +++.+ .|.+||
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~ 264 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFD 264 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEEC
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEEC
Confidence 2367899999999988777665 789999987643 1111 123445678999999944 44444 599999
Q ss_pred cCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
.. + +.+..+..+.. . ..++| +++++.|+.++.++ ++.++
T Consensus 265 ~~-g-~~~~~~~~~~~-~--~~~~f-~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 265 SD-G-QLLGHIPTPGT-A--SNCTF-DQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TT-S-CEEEEEECSSC-C--CEEEE-CTTSCEEEEEETTE-EEEEE
T ss_pred CC-C-CEEEEEECCCc-e--eEEEE-eCCCCEEEEEcCCe-EEEEE
Confidence 74 4 67777765553 2 33677 68998888887764 44333
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=2.7e-12 Score=127.92 Aligned_cols=173 Identities=12% Similarity=0.106 Sum_probs=135.3
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCC--------eeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
.+..+++++...++++|+.+ .+.+|++.+-. ........ .+.+ |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68899999999999999987 56669976321 01221222 3666 999999 89999998 889999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeE
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I 425 (556)
+.+.........+...+.++.+.+. .+++++.||.|.+||+.++..... ...|+|++|+|+| ++.|..||++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~----~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL----AQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE----EESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc----cCCceEEEEcCCc--eEEEEcCCcE
Confidence 9877666666677778888877654 388899999999999987655432 2379999999999 6789999999
Q ss_pred EEEECCCCe---eeee----------ecCCceEEEEEcCCCCEEEEEE
Q 008717 426 LLLDREANF---ERWI----------EEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 426 ~i~d~~~~~---~~~~----------~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
++|+..... ...+ +|...|.++.|.+++.++++=.
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999988766 2223 2678899999999999988743
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.9e-11 Score=123.59 Aligned_cols=250 Identities=9% Similarity=0.021 Sum_probs=173.4
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVS 324 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~ 324 (556)
.+.+..+..-..+ .++++|||++|+.+. .++.|.++|..+.. ....+.-. ......+.
T Consensus 109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~---vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL---PIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGSE
T ss_pred CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc---EEEEEECCCccccccCCCcceEE
Confidence 4556666544455 899999999888775 36789999998763 33333211 12345789
Q ss_pred eCCCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCceEEEEEecCC-CeEEEEeCCCcEEEEECCCCeEEEe----e
Q 008717 325 WSPNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESW----K 397 (556)
Q Consensus 325 ~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~ 397 (556)
|+|||++++++.. ++.|.+.|+.+++.+..+..... ....|++ ..+++.+.||.+.+.++.++++... .
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~ 259 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVF 259 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeee
Confidence 9999999999874 57899999999999888874331 2334443 5566677788888888855443321 1
Q ss_pred cccCCC-eeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeee--------------cCCceEEEEEcCCCCEEEEEEc-
Q 008717 398 GQKTLR-ISDMAITDDGKRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKYLLVNLI- 461 (556)
Q Consensus 398 ~~~~~~-v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~--------------~~~~i~~v~~sp~~~~l~~~~~- 461 (556)
.....+ ...+.+.+++..++..+..+.|.+.|..+....... .......++++|+++.+++...
T Consensus 260 ~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~ 339 (426)
T 3c75_H 260 HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ 339 (426)
T ss_dssp SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence 111111 234578999998888888899999999765421111 0111223789999988777643
Q ss_pred ---------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEee-CCCcEEEEEcCCCceeeee
Q 008717 462 ---------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 462 ---------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~ 525 (556)
++.|.++|..+. +.+.++.....+ ..+.| +|||+ ++++.. .++.|.++|..+.+++...
T Consensus 340 ~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~~P---~gia~-spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 340 RDEWKHKAASRFVVVLNAETG-ERINKIELGHEI---DSINV-SQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCTTCTTSCEEEEEEEETTTC-CEEEEEEEEEEE---CEEEE-CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCEEEEEECCCC-eEEEEEECCCCc---CeEEE-ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999998 888888644322 33566 99999 888888 5999999999999998775
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=2.8e-11 Score=133.17 Aligned_cols=229 Identities=10% Similarity=0.046 Sum_probs=147.1
Q ss_pred cCCCEEEEEeCCCc---EEEEEeec----CCeeEEEEE----ecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEE
Q 008717 282 HDGKYLASSSKDQS---AIIWEVKE----DGQVSLKHR----LSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWD 345 (556)
Q Consensus 282 p~g~~las~s~dg~---i~iwd~~~----~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd 345 (556)
|+|++++....++. -.+|.... ++....+.. -.+|...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888876654433 56676653 222222211 12233468899999999999887654 3599999
Q ss_pred CCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCc--------------EEEEECCCCe---EEEeec-ccCCCeeEE
Q 008717 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS--------------ICLWDLDGRE---LESWKG-QKTLRISDM 407 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~--------------i~vwd~~~~~---~~~~~~-~~~~~v~~v 407 (556)
+.+|+.+... .+...+..++|+|| +.|+.++.++. |++|++.+.. ...... .+...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 12222357899999 99988876654 8999987543 122222 222258899
Q ss_pred EEccCCCEEEEEeCCC-----eEEEEECCCC--e--eeeeecCCceEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCC
Q 008717 408 AITDDGKRIISICREA-----AILLLDREAN--F--ERWIEEEEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDP 474 (556)
Q Consensus 408 ~~s~~g~~l~~~~~d~-----~I~i~d~~~~--~--~~~~~~~~~i~~v~~sp~~~~l~~~~~d----g~I~lwd~~~~~ 474 (556)
.|+|||++|+..+.++ .|++||+.++ . ..+..+...+... ++|+|+.|+..+.+ +.|.+||+.++.
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999988877543 8999999876 3 3344444444444 45899998888764 459999987741
Q ss_pred -cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 475 -KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 475 -~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
.....+..+...+ -.+.+ . ++.++++...|+..++|.+.
T Consensus 353 ~~~~~l~~~~~~~l--~~~~~-~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 353 PRFDTVVPESKDNL--ESVGI-A-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CEEEEEECCCSSEE--EEEEE-E-BTEEEEEEEETTEEEEEEEE
T ss_pred cccEEEecCCCCeE--EEEEE-E-CCEEEEEEEECCEEEEEEEe
Confidence 3333333333322 22344 3 66788888999987777554
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=4.2e-10 Score=108.72 Aligned_cols=233 Identities=12% Similarity=0.029 Sum_probs=160.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
.+...+.++++.++|.+.++...++.|..||.. + ... ..........+.++++.++++.+++...++.|..||.. +
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g-~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G-GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C-CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence 344679999999999987777667889999876 3 222 22333344678999999999988877778899999987 6
Q ss_pred cEEEE-EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec-ccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 350 ECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 350 ~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
+.... +......+..+++.++++..++...++.|..||..+ ....+.. .....+..++++++|..+++....+.|.+
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 65432 222345688999999998666666678899999844 3333322 22346899999999987777666788999
Q ss_pred EECCCCe-eeee--ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC--ccCceeEEEEeecCCCCcEE
Q 008717 428 LDREANF-ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG--HKRARFVIRSCFGGFEQAFI 502 (556)
Q Consensus 428 ~d~~~~~-~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l 502 (556)
||. ++. .... .....+.+++++++|++.++...++.|..||. ++ .. ..+.. ....... +.. .++|++.
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~-~~~~~~~~~~~~~~--i~~-~~~g~l~ 286 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN-TI-QEYQLQTENAEPHG--ITF-GKDGSVW 286 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS-CE-EEEECCSTTCCCCC--EEE-CTTSCEE
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC-cE-EEEECCccCCccce--eEe-CCCCCEE
Confidence 998 444 2221 23466889999999986666656789999998 33 32 23322 2222222 334 7788866
Q ss_pred EEeeCCCcEEEEEc
Q 008717 503 ASGSEDSQNVPEIL 516 (556)
Q Consensus 503 ~sgs~dg~v~iwd~ 516 (556)
++.. . .|..++.
T Consensus 287 v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 287 FALK-C-KIGKLNL 298 (300)
T ss_dssp EECS-S-EEEEEEE
T ss_pred EEcc-C-ceEEeCC
Confidence 6554 4 6776664
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=6.1e-10 Score=109.66 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=149.2
Q ss_pred cEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE
Q 008717 274 EVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (556)
Q Consensus 274 ~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (556)
-..+.+|+|++. ++++...++.|..||..++ .. ..+. ....+.++.|+++|+++++. .+ .|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~---~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-RK---TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE---EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cE---EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE
Confidence 456788999754 5566667889999998754 22 1222 34679999999999877764 44 4999999888764
Q ss_pred EEEecC----CCceEEEEEecCCCeEEEEeC------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE-eC
Q 008717 353 HVYEKT----GVGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI-CR 421 (556)
Q Consensus 353 ~~~~~~----~~~v~~i~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~ 421 (556)
...... ...+.+++++|+|+.+++... .+.|..+| ++.+..+.... .....++|+|+|+.++.+ +.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~-~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI-SIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE-SSEEEEEECTTSCEEEEEETT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC-cccCCeEEcCCCCEEEEEECC
Confidence 333211 245889999999987665542 24677777 45544443222 257899999999876555 45
Q ss_pred CCeEEEEECC--CC-e----eeeee---cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEE
Q 008717 422 EAAILLLDRE--AN-F----ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (556)
Q Consensus 422 d~~I~i~d~~--~~-~----~~~~~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~ 491 (556)
++.|.+||+. ++ . ..+.. ....+..++++++|.+.++...++.|.+||. ++ +.+..+..+...+. .
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~--~ 275 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTT--C 275 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEE--E
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcE--E
Confidence 7899999986 55 3 12221 2355788999999987777766789999998 45 66777766654433 3
Q ss_pred EeecCCCCcEEEEeeC
Q 008717 492 SCFGGFEQAFIASGSE 507 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~ 507 (556)
++|..++++.|+.++.
T Consensus 276 ~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 276 PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEESTTSCEEEEEEB
T ss_pred EEEecCCCCEEEEEec
Confidence 6663388776655544
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=3.4e-10 Score=112.34 Aligned_cols=236 Identities=9% Similarity=0.021 Sum_probs=155.3
Q ss_pred CcEEEEEEccCCCEEEEEe--CCCcEEEEEeecCCeeEEEE----EecCCCCCeEEEEeCCCCCEEEEEeC-----CCcE
Q 008717 273 DEVWFLQFSHDGKYLASSS--KDQSAIIWEVKEDGQVSLKH----RLSGHRKPVFTVSWSPNDHQLLTCGQ-----EEAI 341 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s--~dg~i~iwd~~~~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i 341 (556)
..+..++++|+|+.+++.. .++.++||.+. .+.....- ....|-..+..++++++++.+++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 23446777776 33321110 11234567999999999876665433 5789
Q ss_pred EEEECCCCcEEEEEecC------CCceEEEEEecCCCeEEEE-e---CCCcEEEEECCCCeEEEeeccc-----------
Q 008717 342 RRWDVNSGECLHVYEKT------GVGLISCGWFLDGGGIFAG-M---TDKSICLWDLDGRELESWKGQK----------- 400 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~-~---~dg~i~vwd~~~~~~~~~~~~~----------- 400 (556)
.+||+.+++.+..+... ...+..+++++++..++.+ . .++.|.+||+.++........+
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877776532 2346889999865555444 3 5789999999866554433210
Q ss_pred ------------------CCCeeEEEEccCCCEEEEEeCCC-eEEEEECC---CCe---------eeeeecCCceEEEEE
Q 008717 401 ------------------TLRISDMAITDDGKRIISICREA-AILLLDRE---ANF---------ERWIEEEEVITSFSL 449 (556)
Q Consensus 401 ------------------~~~v~~v~~s~~g~~l~~~~~d~-~I~i~d~~---~~~---------~~~~~~~~~i~~v~~ 449 (556)
...+..++|+|+|+.|+.+..++ .|..++.. ... ....++......+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 01368899999999888877665 56555532 110 122344556778999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEE
Q 008717 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNV 512 (556)
Q Consensus 450 sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~ 512 (556)
+++|.++++...++.|.+||..++ +...... .....+...+++ ++++.++++.+..+.+.
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G-~~~~~~~-~~~~~~p~~va~-~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADR-AYKLLVT-DEKLSWTDSFNF-GSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTT-EEEEEEE-CGGGSCEEEEEE-CTTSCEEEEECCGGGSG
T ss_pred CCCCCEEEEccCCCeEEEEECCCC-CEEEEEE-CCceecCCeeEE-CCCCcEEEEeCcccccc
Confidence 999999998888999999998555 4332222 211222334566 77888777776554443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=4.8e-11 Score=118.95 Aligned_cols=170 Identities=10% Similarity=0.086 Sum_probs=125.1
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEE
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd 387 (556)
++..+++++....+++|+.+ .+.+|++.+.+ ..... .... |+.++| |++.++++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999998 56669865332 11222 3455 999999 89999999 789999999
Q ss_pred CCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
+++.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|||+| +++|..||.+++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 9753322222233336777777654 38888999999999999876322 44689999999999 778999999999
Q ss_pred EEcCCCCcc--eeEE------e---CccCceeEEEEeecCCCCcEEEE
Q 008717 468 WSIESDPKL--VSRY------K---GHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 468 wd~~~~~~~--~~~~------~---~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
|+..+. .. ..++ . +|.. .++.++| .+++.++++
T Consensus 187 ~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~--~V~sI~w-l~~~~flv~ 230 (388)
T 1xip_A 187 FAWRNG-EMEKQFEFSLPSELEELPVEEY--SPLSVTI-LSPQDFLAV 230 (388)
T ss_dssp EEEETT-EEEEEEEECCCHHHHTSCTTTS--EEEEEEE-SSSSEEEEE
T ss_pred EcCCCc-cccccceecCCcccccccCCCe--eEEEEEE-ecCCeEEEE
Confidence 998876 43 4455 2 2443 3455666 778888876
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.30 E-value=9.5e-10 Score=107.20 Aligned_cols=202 Identities=12% Similarity=0.060 Sum_probs=139.4
Q ss_pred CCCCeEEEEeCCCCCEEEE-------EeCCCcEEEEECCCCcEEEEEe----cCCCceEEEEEecC-CCeEEEEeCCCcE
Q 008717 316 HRKPVFTVSWSPNDHQLLT-------CGQEEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLD-GGGIFAGMTDKSI 383 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~~~~~dg~i 383 (556)
.-....+++|++++..+++ ...++.|.+||..+++...... .+...+.+++++++ ++ +++++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCE
Confidence 3445689999999988877 5778899999988887643322 13456889999998 65 4444444579
Q ss_pred EEEECCCCeEEEe-ecc----cCCCeeEEEEccCCCEEEEEeCC---------------CeEEEEECCCCe-eeeeecCC
Q 008717 384 CLWDLDGRELESW-KGQ----KTLRISDMAITDDGKRIISICRE---------------AAILLLDREANF-ERWIEEEE 442 (556)
Q Consensus 384 ~vwd~~~~~~~~~-~~~----~~~~v~~v~~s~~g~~l~~~~~d---------------~~I~i~d~~~~~-~~~~~~~~ 442 (556)
.+||.+ +....+ ... ....+.+++++++|+.+++...+ +.|..||.. ++ ........
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 999998 655544 221 12358899999999887776654 578888876 44 33444445
Q ss_pred ceEEEEEc----CCCCEEEEE-EcCCeEEEEEcC-CCCc-----ceeEEeCcc-CceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 443 VITSFSLS----KDNKYLLVN-LINQEIHLWSIE-SDPK-----LVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 443 ~i~~v~~s----p~~~~l~~~-~~dg~I~lwd~~-~~~~-----~~~~~~~~~-~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
....++|+ |+++.++++ ..++.|.+||+. ++ + ....+.++. .. ...+++ +++|++.++...++.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~~~--p~~i~~-d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-KIENKKVWGHIPGTHEGG--ADGMDF-DEDNNLLVANWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-EEEEEEEEEECCCCSSCE--EEEEEE-BTTCCEEEEEETTTE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-ccccceEEEECCCCCCCC--CCceEE-CCCCCEEEEEcCCCE
Confidence 67889999 999766655 457899999986 33 3 222233332 22 233555 889998888878899
Q ss_pred EEEEEcCCCceeee
Q 008717 511 NVPEILLSESVAAA 524 (556)
Q Consensus 511 v~iwd~~~~~~~~~ 524 (556)
|.+||..+++....
T Consensus 249 i~~~d~~~g~~~~~ 262 (314)
T 1pjx_A 249 IEVFGPDGGQPKMR 262 (314)
T ss_dssp EEEECTTCBSCSEE
T ss_pred EEEEcCCCCcEeEE
Confidence 99999986665433
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=2.7e-10 Score=113.20 Aligned_cols=220 Identities=7% Similarity=-0.104 Sum_probs=145.7
Q ss_pred cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEecC------
Q 008717 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRWDVNSGECLHVYEKT------ 358 (556)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------ 358 (556)
+|.++|..+. +.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+..+...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889998876 455666555556 799999999999886 3678999999999999998643
Q ss_pred -CCceEEEEEecCCCeEEEEeC--CCcEEE--EECCCCeEEEeecccC------CCeeEEEE------------------
Q 008717 359 -GVGLISCGWFLDGGGIFAGMT--DKSICL--WDLDGRELESWKGQKT------LRISDMAI------------------ 409 (556)
Q Consensus 359 -~~~v~~i~~~~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~------~~v~~v~~------------------ 409 (556)
......++++|||++++++.. +..|.+ +|..+ +..+..... +.-.-+++
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 123457899999999999875 356888 88865 222211000 00000111
Q ss_pred -------------------ccCCCEEEEEeCCCeEEEEECCCCeeeeee-----------c---CCceEEEEEcCCCCEE
Q 008717 410 -------------------TDDGKRIISICREAAILLLDREANFERWIE-----------E---EEVITSFSLSKDNKYL 456 (556)
Q Consensus 410 -------------------s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~-----------~---~~~i~~v~~sp~~~~l 456 (556)
++++..++..+. +.|.+.|..+....... + ......++++||++.+
T Consensus 200 ~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred CeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 333333444444 66777777553311110 0 0111227899999988
Q ss_pred EEEEc-C--------CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEee-CCCcEEEEEcCCCceeeee
Q 008717 457 LVNLI-N--------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 457 ~~~~~-d--------g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sgs-~dg~v~iwd~~~~~~~~~~ 525 (556)
+++.. . +.+.++|+.+. +.+.++.....+ ..+.+ +|||+ ++++.. .++.|.++|+.+.+++...
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~~p---~gi~~-s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGHDS---DAIIA-AQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEEEE---CEEEE-CCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EEEeccccCcccccCCCEEEEECCCC-eEEEEEECCCCc---ceEEE-CCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 87654 2 35679999998 788877655432 33566 89998 456666 5999999999999988776
Q ss_pred cC
Q 008717 526 SS 527 (556)
Q Consensus 526 ~~ 527 (556)
..
T Consensus 354 ~v 355 (368)
T 1mda_H 354 EL 355 (368)
T ss_dssp CC
T ss_pred EC
Confidence 53
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.1e-09 Score=111.44 Aligned_cols=192 Identities=11% Similarity=0.097 Sum_probs=134.5
Q ss_pred EEEccCCCEEEEEeCCC--cEEEEEeecCCeeEEEEEecC-CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 008717 278 LQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (556)
Q Consensus 278 ~~~sp~g~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (556)
++|+|+++.|+++..++ .|.+|+...+........+.. ....+.+++++|++..|+.+..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999998888766 688888765432222222222 456678899999655666677788999999987764322
Q ss_pred ----EecCCCce--EEEEEecC-CCeEEEEeCCCcEEEEECCCCeEEEeeccc--------------CCCeeEEEEccCC
Q 008717 355 ----YEKTGVGL--ISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQK--------------TLRISDMAITDDG 413 (556)
Q Consensus 355 ----~~~~~~~v--~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~v~~v~~s~~g 413 (556)
.......- ..++|+|+ +..+++-..++.|+.|+.++. ...+.... -.....++++|+|
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 11121111 28999995 555555566789999998765 33332221 1258899999999
Q ss_pred CEEEEEe-CCCeEEEEECCCCe-eeeeec---------------CCceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 414 KRIISIC-REAAILLLDREANF-ERWIEE---------------EEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 414 ~~l~~~~-~d~~I~i~d~~~~~-~~~~~~---------------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
+++++-. .++.|+.||+.++. ..+.++ -.....++++++|.++++-..++.|+.+++
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9777777 78999999987777 444433 245889999999888877777888888875
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=4.7e-09 Score=101.76 Aligned_cols=205 Identities=10% Similarity=0.161 Sum_probs=137.1
Q ss_pred CCCCeEEEEeCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE
Q 008717 316 HRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (556)
Q Consensus 316 h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 394 (556)
+..-..+..|+|++.. +++...++.|..||..+++. ..+. ....+.+++++++|++++ +. ++.|.+||.+++.+.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEE
Confidence 3444568899996554 55555678999999988765 3333 356789999999999544 44 567999999887765
Q ss_pred Eeecc----cCCCeeEEEEccCCCEEEEEeC-----------CCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEE
Q 008717 395 SWKGQ----KTLRISDMAITDDGKRIISICR-----------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 395 ~~~~~----~~~~v~~v~~s~~g~~l~~~~~-----------d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
.+... ....+++++++|+|+++++... .+.|..+|...............+.++|+|+++.|+++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 54432 1225889999999996665432 23455555433223344445567899999999877554
Q ss_pred -EcCCeEEEEEcC--CCCcc-----eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 460 -LINQEIHLWSIE--SDPKL-----VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 460 -~~dg~I~lwd~~--~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
+.++.|.+||+. ++ .. ...+..+.... -.+++ .++|++.++...++.|..||..++++......+
T Consensus 167 ~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p--~g~~~-d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIP--DGMCI-DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEE--EEEEE-BTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred cCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCC--CeeEE-CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 457889999973 44 32 11222222222 22445 889988887778889999999988877665544
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.24 E-value=1.4e-08 Score=101.66 Aligned_cols=233 Identities=9% Similarity=-0.019 Sum_probs=153.5
Q ss_pred EccCCCEEEEEeC--CC---cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEE
Q 008717 280 FSHDGKYLASSSK--DQ---SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRW 344 (556)
Q Consensus 280 ~sp~g~~las~s~--dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw 344 (556)
..|++++++.... .. +|.+||..++ +.+..+.....+ .+.++|||++++.+. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467776666543 22 7899999865 344555544444 899999999999886 36789999
Q ss_pred ECCCCcEEEEEecC-------CCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEe-ecccCCCeeEEEEccCC-
Q 008717 345 DVNSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESW-KGQKTLRISDMAITDDG- 413 (556)
Q Consensus 345 d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~s~~g- 413 (556)
|..+.+.+..+... ......+.|+|||+++++++. ++.|.++| .++++... .... .++.+.|++
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~ 177 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAP 177 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCC
Confidence 99998888776532 123457899999999999874 47899999 88776544 3322 235556665
Q ss_pred CEEEEEeCCCeEEEEECCCCeee-ee------ecCCc-eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC-cceeEEeCc-
Q 008717 414 KRIISICREAAILLLDREANFER-WI------EEEEV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGH- 483 (556)
Q Consensus 414 ~~l~~~~~d~~I~i~d~~~~~~~-~~------~~~~~-i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~-~~~~~~~~~- 483 (556)
..+++.+.||.+.++|. +++.. .. ....+ .....+.+++..++..+..+.+.+.|+.+.. ..+..+...
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 35667788999999999 66522 11 11122 1334567766555555568899999986541 122222211
Q ss_pred ---------cCceeEEEEeecCCCCcEEEEeeC----------CCcEEEEEcCCCceeeeec
Q 008717 484 ---------KRARFVIRSCFGGFEQAFIASGSE----------DSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 484 ---------~~~~~~i~~~~~s~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~ 526 (556)
...... +.+ +|+++.++.+.. ++.|.++|..+++.+....
T Consensus 257 ~~~~~~~~~p~g~~~--~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~ 315 (373)
T 2mad_H 257 GGRKADTWRPGGWQQ--VAY-LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS 315 (373)
T ss_pred CcccccceecCceEe--EEE-CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE
Confidence 011111 334 889888877653 3579999999988866553
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=8.9e-10 Score=120.15 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=134.5
Q ss_pred CCCCCeEEEEeCCCCCEEEEEe-----CCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC--------
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCG-----QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-------- 381 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-------- 381 (556)
+|...+..++|||||++|+.+. .+..|++||+.+|+.+.... .......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999988543 23579999999998654311 11113467899 999999988774
Q ss_pred -----cEEEEECCCCe---EEEeec-c-cCCCeeEEEEccCCCEEEEEeC----CCeEEEEECCCCe---eeeeecCCce
Q 008717 382 -----SICLWDLDGRE---LESWKG-Q-KTLRISDMAITDDGKRIISICR----EAAILLLDREANF---ERWIEEEEVI 444 (556)
Q Consensus 382 -----~i~vwd~~~~~---~~~~~~-~-~~~~v~~v~~s~~g~~l~~~~~----d~~I~i~d~~~~~---~~~~~~~~~i 444 (556)
.|++|++.+.. ...... . +...+..+.|+|||++++.... ++.|+++|+.++. ..+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999997532 122222 2 2335788999999998765443 3589999998763 4455555555
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEEcCCCCcc--eeEEeCccCceeEEEEeecCCCCcEEEEeeC-CC--cEEEEE
Q 008717 445 TSFSLSKDNKYLLVNLI----NQEIHLWSIESDPKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DS--QNVPEI 515 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~----dg~I~lwd~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~-dg--~v~iwd 515 (556)
... ++++|..|+..+. .+.|..+|+.++ .. ...+..|...+ + .+ +++++.|+.... ++ .|++|+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~--~--~~-s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-GPAHWRDLIPERQQV--L--TV-HSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-CGGGCEEEECCCSSC--E--EE-EEETTEEEEEEEETTEEEEEEEC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-CccccEEEecCCCCE--E--EE-EEECCEEEEEEEECCeeEEEEEE
Confidence 554 6777776665553 257999999876 33 45666776653 2 34 778887776655 44 689999
Q ss_pred cCCCceee
Q 008717 516 LLSESVAA 523 (556)
Q Consensus 516 ~~~~~~~~ 523 (556)
+.++....
T Consensus 357 ~~g~~~~~ 364 (693)
T 3iuj_A 357 YEGKRVRE 364 (693)
T ss_dssp TTSCEEEE
T ss_pred CCCCeeEE
Confidence 88665433
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.5e-08 Score=101.36 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=147.9
Q ss_pred cCCCEEEE-EeCCCcEEEEEeecC-CeeEEEEEec-------CCCCCeEEEEeCCCCCEEEEEeCC------CcEEEEEC
Q 008717 282 HDGKYLAS-SSKDQSAIIWEVKED-GQVSLKHRLS-------GHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDV 346 (556)
Q Consensus 282 p~g~~las-~s~dg~i~iwd~~~~-~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~ 346 (556)
+++++|+. +..++.|.|+|+.+. ...+..+++. .....-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887765 557889999999643 3344555552 111234567788999 66666555 78999999
Q ss_pred CCCcEEEEEecCC---CceEEEEEecCCCeEEEEe-------------------CCCcEEEEECCCCeEEEeeccc--CC
Q 008717 347 NSGECLHVYEKTG---VGLISCGWFLDGGGIFAGM-------------------TDKSICLWDLDGRELESWKGQK--TL 402 (556)
Q Consensus 347 ~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~--~~ 402 (556)
.+++.+..+.... ..-+.+.|+|+++.++++. .+.+|.+||+.++++....... ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999999887432 2234688899999888885 3679999999876654433321 12
Q ss_pred CeeEEEE--ccCCCEEEEEe------CCCeEEEEECCCCe---eeee--ec-----------------CCceEEEEEcCC
Q 008717 403 RISDMAI--TDDGKRIISIC------REAAILLLDREANF---ERWI--EE-----------------EEVITSFSLSKD 452 (556)
Q Consensus 403 ~v~~v~~--s~~g~~l~~~~------~d~~I~i~d~~~~~---~~~~--~~-----------------~~~i~~v~~sp~ 452 (556)
....+.| +|+++++++++ .+++|.+|....+. ...+ .. ...+..+.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4556656 99999887776 45688877665543 1111 00 245788999999
Q ss_pred CCEEEEEEc-CCeEEEEEcCCC--CcceeEEeCc-----------c----CceeEEEEeecCCCCcEEEEee
Q 008717 453 NKYLLVNLI-NQEIHLWSIESD--PKLVSRYKGH-----------K----RARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 453 ~~~l~~~~~-dg~I~lwd~~~~--~~~~~~~~~~-----------~----~~~~~i~~~~~s~~~~~l~sgs 506 (556)
|++|.++.. .+.|.+||+... .+++..+... . .+ .. +.+ +|||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP-r~--~~l-SpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP-QM--LEI-SRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC-CC--EEE-CTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC-CE--EEE-cCCCCEEEEEc
Confidence 999988876 578999998632 1344444322 0 11 11 334 89999999888
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=2.2e-09 Score=104.52 Aligned_cols=198 Identities=8% Similarity=0.034 Sum_probs=133.0
Q ss_pred eEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE-EecCC-CCCeEEEEeCCCCCEEEE----EeC-
Q 008717 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH-RLSGH-RKPVFTVSWSPNDHQLLT----CGQ- 337 (556)
Q Consensus 265 ~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~h-~~~v~~l~~s~~~~~l~s----~~~- 337 (556)
...+..+...+..++++++|+++++...++.|.+|+.. + ...... ...+. ...+..++++|+|+.+++ |..
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g-~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~ 155 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G-QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK 155 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C-CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence 34555567789999999999977766566789999875 3 322221 11111 234678999999998886 332
Q ss_pred ------------CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEE---Ee
Q 008717 338 ------------EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELE---SW 396 (556)
Q Consensus 338 ------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~---~~ 396 (556)
.+.|..||..+++..... .......++|+||++.++++... +.|.+||+.+..+. .+
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred cccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence 246788887777654433 33456789999999988887765 68999998754321 12
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
.......+..++++++|++.+ ++. +.|.+||........+.....+.+++|+|+++.|++++.++ +..++
T Consensus 234 ~~~~~~~pdgi~~d~~G~lwv-~~~-~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 234 ASVPDGLPDGFCVDRGGWLWS-SSG-TGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECCSSSCCCSEEECTTSCEEE-CCS-SEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EECCCCCCCeEEECCCCCEEE-ecC-CcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 222233567899999999444 444 45999998655543343344688999999999888888654 44443
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=2.4e-08 Score=98.23 Aligned_cols=196 Identities=13% Similarity=0.018 Sum_probs=129.3
Q ss_pred eEEEEeCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 008717 320 VFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (556)
Q Consensus 320 v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 398 (556)
..+..|+|++. .+++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||.+++.+..+..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 45778999755 4555556789999999887643 333 34578999999998876654 44 49999998777655433
Q ss_pred cc----CCCeeEEEEccCCCEEEEEeC------CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEE
Q 008717 399 QK----TLRISDMAITDDGKRIISICR------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIH 466 (556)
Q Consensus 399 ~~----~~~v~~v~~s~~g~~l~~~~~------d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~ 466 (556)
.. ...+++++++|+|+++++... .+.|..+| +++ ............++|+|+++.++++. .++.|.
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 21 125889999999997665432 24666777 455 33333444578899999998776654 468899
Q ss_pred EEEcC--CC-C----cceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 467 LWSIE--SD-P----KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 467 lwd~~--~~-~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
+||+. ++ . +.+..+....... -.+++ .++|.+.++...++.|.+|+. +++.....
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p--~gi~~-d~~G~lwva~~~~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGM--DGSVC-DAEGHIWNARWGEGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEE--EEEEE-CTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred EEEcccccCCcccCceEEEECCCCCCCC--CeeEE-CCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence 99986 33 1 1111222122221 22444 889987777767789999998 45544433
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.15 E-value=1.1e-08 Score=101.54 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=154.7
Q ss_pred EccCCCEEEEEeC-----CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEE
Q 008717 280 FSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRW 344 (556)
Q Consensus 280 ~sp~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw 344 (556)
..|+++.++.... ++.|.+.|..+. +.+..+.....+ . +.++|||+++++++ .++.|.+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 4578887777654 678999999876 455555554555 4 99999999988776 35789999
Q ss_pred ECCCCcEEEEEecCC-------CceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCE
Q 008717 345 DVNSGECLHVYEKTG-------VGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (556)
Q Consensus 345 d~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 415 (556)
|..+++.+..+.... .....+.++|||++++++.. ++.|.++|+.++++........ . ...+....+.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDT 191 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCce
Confidence 999999988876422 23557899999999998874 6899999999887655443321 1 2233334456
Q ss_pred EEEEeCCCeEEEEECCC-Cee-eee-ec----CCceE-EEEEc-CCCCEEEEEEcCCeEEEEEcCCCC-cceeEEe----
Q 008717 416 IISICREAAILLLDREA-NFE-RWI-EE----EEVIT-SFSLS-KDNKYLLVNLINQEIHLWSIESDP-KLVSRYK---- 481 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~-~~~-~~~-~~----~~~i~-~v~~s-p~~~~l~~~~~dg~I~lwd~~~~~-~~~~~~~---- 481 (556)
+++.+.||.+.+.++.+ ++. ... .. ..++. ...|. ++|++++ .+.+|.|++.|+.+.. +.+..+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 77888889988888876 442 100 11 12221 24564 6786555 5558999999997651 2233332
Q ss_pred -----C-ccCceeEEEEeecCCCCcEEEEeeC----------CCcEEEEEcCCCceeeee
Q 008717 482 -----G-HKRARFVIRSCFGGFEQAFIASGSE----------DSQNVPEILLSESVAAAA 525 (556)
Q Consensus 482 -----~-~~~~~~~i~~~~~s~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~ 525 (556)
+ ....... +.+ +++++.++.... .+.|.+.|+.+++.+...
T Consensus 271 ~~~~~g~~p~g~q~--~a~-~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i 327 (386)
T 3sjl_D 271 AERADGWRPGGWQQ--VAY-HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 327 (386)
T ss_dssp HHHHTTEEECSSSC--EEE-ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCcce--eeE-CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE
Confidence 0 0011111 233 778888777643 257999999999887654
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=122.95 Aligned_cols=189 Identities=15% Similarity=0.030 Sum_probs=106.4
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-c
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV-G 361 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~ 361 (556)
++..+++++.||.|+.||..++. ....+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~---~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS---IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC---EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCC---EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 57789999999999999998773 3344443 4555555566787888888999999999999987666543311 0
Q ss_pred eE-EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCeeeeeec
Q 008717 362 LI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440 (556)
Q Consensus 362 v~-~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~~~ 440 (556)
+. +..+. ++..+++++.++.|+.||.++++.......+. ...++|++..+++++.|+.|+.||.++++......
T Consensus 83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 10 01111 34567888889999999998766543332221 23456788889999999999999999887211110
Q ss_pred CCceEEEEEcCCC---CEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 441 EEVITSFSLSKDN---KYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 441 ~~~i~~v~~sp~~---~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
........++++. ..+++++.||.|+.||..++ +.+.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~ 201 (369)
T 2hz6_A 158 YFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNY 201 (369)
T ss_dssp EEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEEC
T ss_pred cccccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecC
Confidence 0112223344432 45777888999999999998 77776653
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=1.8e-08 Score=104.25 Aligned_cols=237 Identities=11% Similarity=0.062 Sum_probs=163.7
Q ss_pred cCCCEEEEEeC-CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEe-C-CCCCEEEEEe------------------CCCc
Q 008717 282 HDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW-S-PNDHQLLTCG------------------QEEA 340 (556)
Q Consensus 282 p~g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s-~~~~~l~s~~------------------~dg~ 340 (556)
+||+++..... ++.|.+.|+.+....+.+ .+.. ......+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888777654 556999999876322222 3332 235778887 5 9999998885 2457
Q ss_pred EEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC--------------------------------------c
Q 008717 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--------------------------------------S 382 (556)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------------------------------------~ 382 (556)
+.++|..+.+.+..+.... ....++++|+|+++++++.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999999888877543 346678999999999988553 3
Q ss_pred EEEEECCC--C-e-EEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe-------------eeeeecCCce
Q 008717 383 ICLWDLDG--R-E-LESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-------------ERWIEEEEVI 444 (556)
Q Consensus 383 i~vwd~~~--~-~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~-------------~~~~~~~~~i 444 (556)
|.+.|.++ + . +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ..........
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 66777765 2 2 22333332 578899999999877665 57889999999652 2233345568
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCC----------CCcceeEEeCccCceeEEEE--eecCCCCcEEEEeeC---CC
Q 008717 445 TSFSLSKDNKYLLVNLINQEIHLWSIES----------DPKLVSRYKGHKRARFVIRS--CFGGFEQAFIASGSE---DS 509 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~~dg~I~lwd~~~----------~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~sgs~---dg 509 (556)
..++|+|+|...++...|+.|..||+.+ . +.+.++..|-++...... ...+|||++|+++.. |.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~-~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD-PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC-CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc-eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 8999999994444556789999999976 4 677777777553221111 122899999998754 43
Q ss_pred c----------EEEEEcCCCceeee
Q 008717 510 Q----------NVPEILLSESVAAA 524 (556)
Q Consensus 510 ~----------v~iwd~~~~~~~~~ 524 (556)
. -.++|+.++++...
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccCCCCCCCcceEEEcCCCcEEEE
Confidence 2 28899987776443
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.2e-08 Score=110.56 Aligned_cols=237 Identities=11% Similarity=0.064 Sum_probs=153.9
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC--CCCCeEEEEeCC---CCCEEEEEe------CCCcEEEEECCCCcE
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSP---NDHQLLTCG------QEEAIRRWDVNSGEC 351 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~ 351 (556)
++..|++++.|+.|..+|..++.. +..+.. +......+..+| ++ .++.++ .+|.|..||..+|+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~---~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQR---AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE---EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEccCCEEEEEECCCCCE---eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 356788888999999999988743 222222 111111112222 44 444443 368999999999998
Q ss_pred EEEEecCC-------------------------------CceEEEEEecCCCeEEEEeCCCc------------------
Q 008717 352 LHVYEKTG-------------------------------VGLISCGWFLDGGGIFAGMTDKS------------------ 382 (556)
Q Consensus 352 ~~~~~~~~-------------------------------~~v~~i~~~~~~~~l~~~~~dg~------------------ 382 (556)
+-.+.... .....++++|+...+++++.++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 87765210 01125778888899999888764
Q ss_pred -EEEEECCCCeEEEeecc--cC-------CCeeEEEEccCCC---EEEEEeCCCeEEEEECCCCeeee-ee--cCC----
Q 008717 383 -ICLWDLDGRELESWKGQ--KT-------LRISDMAITDDGK---RIISICREAAILLLDREANFERW-IE--EEE---- 442 (556)
Q Consensus 383 -i~vwd~~~~~~~~~~~~--~~-------~~v~~v~~s~~g~---~l~~~~~d~~I~i~d~~~~~~~~-~~--~~~---- 442 (556)
|..||.++++..-.... +. ..+.......+|+ .++.++.+|.++++|..+++... .. ...
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999987765433221 11 1122222333565 78889999999999999987221 00 000
Q ss_pred ----------------------------------ceEEEEEcCCCCEEEEEEc---------------------------
Q 008717 443 ----------------------------------VITSFSLSKDNKYLLVNLI--------------------------- 461 (556)
Q Consensus 443 ----------------------------------~i~~v~~sp~~~~l~~~~~--------------------------- 461 (556)
.-..++++|+..+++++..
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0123789998888887643
Q ss_pred ------------------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 462 ------------------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 462 ------------------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
+|.|+.||+.++ +.+.++..+..... ..+ ...+.+|+.|+.||.|+.||..+++++.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~---g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNG---GTL-STAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCC---CEE-EETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccC---ccc-eECCCEEEEECCCCcEEEEECCCCccce
Confidence 377999999999 77777765543211 122 4467789999999999999999999876
Q ss_pred eecCC
Q 008717 524 AASSL 528 (556)
Q Consensus 524 ~~~~~ 528 (556)
.....
T Consensus 511 ~~~~~ 515 (689)
T 1yiq_A 511 EQPAA 515 (689)
T ss_dssp EEECS
T ss_pred eeeCC
Confidence 55433
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.08 E-value=3.1e-09 Score=105.54 Aligned_cols=215 Identities=12% Similarity=0.006 Sum_probs=136.1
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEE
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVS 324 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~ 324 (556)
.+.+..+.....+ .+.++|||++++.+. .++.|.+||..+.. ...++..+ -.....+.
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EEEEEEETTSCSCCBSCCTTSEE
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC---EEEEEECCCccccccCCCcceEE
Confidence 4566666654555 799999999998876 36889999999764 34444322 12345789
Q ss_pred eCCCCCEEEEEeC--CCcEEE--EECCCCcEEEEEecCC------------------CceEEEE----------------
Q 008717 325 WSPNDHQLLTCGQ--EEAIRR--WDVNSGECLHVYEKTG------------------VGLISCG---------------- 366 (556)
Q Consensus 325 ~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~------------------~~v~~i~---------------- 366 (556)
++|||++++++.. +..|.+ +|+.+ +..+.... +.+..+.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t 207 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee
Confidence 9999999999875 356888 88865 23332100 0000000
Q ss_pred ----------EecCCCeEEEEeCCCcEEEEECCCCe--EE-Eeecc------c---CCCeeEEEEccCCCEEEEEeC---
Q 008717 367 ----------WFLDGGGIFAGMTDKSICLWDLDGRE--LE-SWKGQ------K---TLRISDMAITDDGKRIISICR--- 421 (556)
Q Consensus 367 ----------~~~~~~~l~~~~~dg~i~vwd~~~~~--~~-~~~~~------~---~~~v~~v~~s~~g~~l~~~~~--- 421 (556)
..+++..++..+. +.|.+.|+.+.. +. .+... . ......++++|+++.++++..
T Consensus 208 ~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 208 GAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp TTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred eeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 0233333333334 566666765422 11 11100 0 011223789999998876543
Q ss_pred ------CCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCE-EEEEE-cCCeEEEEEcCCCCcceeEEeCccCc
Q 008717 422 ------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKY-LLVNL-INQEIHLWSIESDPKLVSRYKGHKRA 486 (556)
Q Consensus 422 ------d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~-l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~ 486 (556)
++.+.++|+.+.+ ...+........++|+|||++ ++++. .++.|.++|+.+. +.+.++.....+
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~P 359 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKGP 359 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSCC
T ss_pred CcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCCC
Confidence 2357799999988 444444446899999999985 55555 4899999999998 888888766554
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=9.3e-09 Score=111.33 Aligned_cols=235 Identities=12% Similarity=0.032 Sum_probs=155.5
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC-C----CCeEE-EEeCCCCCEEEEEeC------CCcEEEEECCCCc
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-R----KPVFT-VSWSPNDHQLLTCGQ------EEAIRRWDVNSGE 350 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-~----~~v~~-l~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 350 (556)
++..|+.++.|+.|..+|..++. .+..+..+ . ..+.+ ... .+..++.++. ++.|+.+|..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~---~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGK---EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC---EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCC---EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 45678888899999999998874 33333332 1 11111 111 2445555543 6899999999999
Q ss_pred EEEEEecCCCc--------------------------------eEEEEEecCCCeEEEEeCCC-----------------
Q 008717 351 CLHVYEKTGVG--------------------------------LISCGWFLDGGGIFAGMTDK----------------- 381 (556)
Q Consensus 351 ~~~~~~~~~~~--------------------------------v~~i~~~~~~~~l~~~~~dg----------------- 381 (556)
.+..+...... ...++++|++..+++++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 98777643211 12467889999999887764
Q ss_pred --cEEEEECCCCeEEEeec-c-cC-------CCeeEEEEccCC---CEEEEEeCCCeEEEEECCCCeeeeeecC------
Q 008717 382 --SICLWDLDGRELESWKG-Q-KT-------LRISDMAITDDG---KRIISICREAAILLLDREANFERWIEEE------ 441 (556)
Q Consensus 382 --~i~vwd~~~~~~~~~~~-~-~~-------~~v~~v~~s~~g---~~l~~~~~d~~I~i~d~~~~~~~~~~~~------ 441 (556)
.|..+|.++++..-... . +. .....+....+| ..++.++.+|.|+++|..+++.......
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 49999998766543322 1 11 122333444577 6788999999999999999882211110
Q ss_pred -------Cce------------------------EEEEEcCCCCEEEEEEcC----------------------------
Q 008717 442 -------EVI------------------------TSFSLSKDNKYLLVNLIN---------------------------- 462 (556)
Q Consensus 442 -------~~i------------------------~~v~~sp~~~~l~~~~~d---------------------------- 462 (556)
.++ ..++++|++.+++++..+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 001 157899998888886542
Q ss_pred ---------------CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecC
Q 008717 463 ---------------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 463 ---------------g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 527 (556)
|.|..||+.++ +.+.++..... ... ..+ ..++.+++.++.||.+++||..+++++.....
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~-~~~--g~~-~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSP-WNG--GTL-TTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEESSS-CCC--CEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccCCCCCccEEEEEeCCCC-cEEeecCCCCC-CcC--cce-EeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 77999999998 77777653322 111 222 44677888899999999999999998766543
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=4.8e-11 Score=119.71 Aligned_cols=186 Identities=10% Similarity=-0.022 Sum_probs=108.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeE-EEeecccCCCee-
Q 008717 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRIS- 405 (556)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~- 405 (556)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||.++++. ..+.......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999888876 4455555566777888888999999999976543 333222110111
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCeeeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 406 DMAITDDGKRIISICREAAILLLDREANFERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+..+. ++..+++++.++.|+.||..+++.... .... ...++|++..+++++.|+.|+.||.+++ +.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSS-SCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEeccc
Confidence 11111 345677888899999999999882221 1111 2456778889999999999999999998 6666654322
Q ss_pred CceeEEEEeecCCCC---cEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 485 RARFVIRSCFGGFEQ---AFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~---~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
.. ...+ ..+. ..+++++.||.|+.||..+++.+...
T Consensus 161 ~~----~~~~-~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 161 YA----ASLP-EDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EC----CBCC-CCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred cc----Cccc-cCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 11 1122 2221 45777899999999999999875543
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.06 E-value=2e-08 Score=101.36 Aligned_cols=232 Identities=9% Similarity=0.033 Sum_probs=152.2
Q ss_pred CCCEEEEEeC-C----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEECC
Q 008717 283 DGKYLASSSK-D----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRWDVN 347 (556)
Q Consensus 283 ~g~~las~s~-d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~ 347 (556)
+++.++.... + +.|.++|..+. +.+..+.....+ .+.++||+++++++. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 5555554433 2 68999999876 455555544555 899999999988876 36789999999
Q ss_pred CCcEEEEEecC-------CCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCC-CEEE
Q 008717 348 SGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDG-KRII 417 (556)
Q Consensus 348 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~ 417 (556)
+++.+..+.-. ......+.++|||++++++.. ++.|.+.|+.+.++........ . ....|++ ..++
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v 233 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFY 233 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEE
Confidence 99998887632 123456899999999999874 5789999999877654433221 1 2334443 4566
Q ss_pred EEeCCCeEEEEECCCCeeee-----ee-cCCc-eEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc-ceeEEeCc------
Q 008717 418 SICREAAILLLDREANFERW-----IE-EEEV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGH------ 483 (556)
Q Consensus 418 ~~~~d~~I~i~d~~~~~~~~-----~~-~~~~-i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~-~~~~~~~~------ 483 (556)
+.+.||.+.+.+..+++... +. ...+ ...+.+++++..++..+..+.+.+.|+.+... .+..+...
T Consensus 234 ~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~ 313 (426)
T 3c75_H 234 MNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERA 313 (426)
T ss_dssp EEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGG
T ss_pred EEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccc
Confidence 67778888888885554211 11 1111 12357899998888778889999999865411 11111100
Q ss_pred ----cCceeEEEEeecCCCCcEEEEeeC----------CCcEEEEEcCCCceeeeec
Q 008717 484 ----KRARFVIRSCFGGFEQAFIASGSE----------DSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 484 ----~~~~~~i~~~~~s~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~ 526 (556)
...... +.+ +++++.++.... ++.|.+.|..+.+.+....
T Consensus 314 ~g~~p~g~~~--va~-s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~ 367 (426)
T 3c75_H 314 DDWRPGGWQQ--TAY-HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE 367 (426)
T ss_dssp GTEEECSSSC--EEE-EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred cccccCCcee--eEE-cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence 000001 234 788887776642 3579999999998876553
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=2.2e-07 Score=88.35 Aligned_cols=235 Identities=9% Similarity=-0.055 Sum_probs=146.8
Q ss_pred CEEEEEeCCCcEEEEEeecCCee--EEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCc
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKTGVG 361 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (556)
.+|+.+.. +.|+.+++...... .....+......+..++|++++..|+.+. .++.|..++..++.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 47888887743210 00111111123467899999776666555 4679999999766544334333356
Q ss_pred eEEEEEecCCCeEEEEe-CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCee-e
Q 008717 362 LISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFE-R 436 (556)
Q Consensus 362 v~~i~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---d~~I~i~d~~~~~~-~ 436 (556)
...+++++++..++.+. ..+.|.++++++.....+..........++++|++..++.+.. .+.|..+++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 78999999766666554 5678999999865443333322236899999997666655554 36898998876542 2
Q ss_pred ee-ecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 437 WI-EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 437 ~~-~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
.. ........++++|++..|+++. ..+.|..+|.... .....+.+...+ ..++. . ++.+.++....+.|.++
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~P---~gi~~-d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYP---FAVTS-Y-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSE---EEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCCc---eEEEE-e-CCEEEEEECCCCeEEEE
Confidence 22 2234678999999877766655 4578999998754 333333332222 22333 2 34444444457899999
Q ss_pred EcCCCceeeeec
Q 008717 515 ILLSESVAAAAS 526 (556)
Q Consensus 515 d~~~~~~~~~~~ 526 (556)
|..+++......
T Consensus 235 d~~~g~~~~~i~ 246 (267)
T 1npe_A 235 DLAISKEMDTFH 246 (267)
T ss_dssp ETTTTEEEEEEC
T ss_pred eCCCCCceEEEc
Confidence 999888766653
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.03 E-value=3.1e-07 Score=91.95 Aligned_cols=231 Identities=10% Similarity=0.049 Sum_probs=145.9
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCce
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 362 (556)
++..++.++.++.|..+|..++.. ................ .+..++.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV---AWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE---EEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---EEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 456778888899999999987642 2222222211111122 24578888889999999999999887776432211
Q ss_pred -----EEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCC-------CeeEEEEcc--CCCEEEEEeCCCeEEEE
Q 008717 363 -----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL-------RISDMAITD--DGKRIISICREAAILLL 428 (556)
Q Consensus 363 -----~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~v~~s~--~g~~l~~~~~d~~I~i~ 428 (556)
..... .+..+++++.++.|..+|.++++..-....... .+..+...| .+..+++++.++.+..+
T Consensus 177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 11222 245788888899999999986655432221100 000010111 24677888889999999
Q ss_pred ECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCC
Q 008717 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (556)
Q Consensus 429 d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~d 508 (556)
|..+++............+.. ++..+++++.++.|..+|..++ +.+............ .... .+..|+.++.+
T Consensus 255 d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~-~~~~---~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLT-SPVL---YNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCC-CCEE---ETTEEEEECTT
T ss_pred ECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCccc-CCEE---ECCEEEEEeCC
Confidence 999988444333344555544 3667888888999999999998 666665422211110 0111 34678889999
Q ss_pred CcEEEEEcCCCceeeeecC
Q 008717 509 SQNVPEILLSESVAAAASS 527 (556)
Q Consensus 509 g~v~iwd~~~~~~~~~~~~ 527 (556)
|.|+++|..++++......
T Consensus 328 g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEec
Confidence 9999999999998765543
No 232
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=2.3e-07 Score=90.83 Aligned_cols=237 Identities=9% Similarity=-0.046 Sum_probs=150.3
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC-----------------CCCCeEEEEeCCCCCEEEEE
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG-----------------HRKPVFTVSWSPNDHQLLTC 335 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------h~~~v~~l~~s~~~~~l~s~ 335 (556)
....+++|.++|++++++..++.|..|+..++ .......... ....+..+++.+++..|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 44567889999997888888899999987643 2222111000 01357889999833345555
Q ss_pred eCCCcEEEEECCCCcEEEEEec-----CCCceEEEEEec-CCCeEEEEeC-----------------CCcEEEEECCCCe
Q 008717 336 GQEEAIRRWDVNSGECLHVYEK-----TGVGLISCGWFL-DGGGIFAGMT-----------------DKSICLWDLDGRE 392 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~-~~~~l~~~~~-----------------dg~i~vwd~~~~~ 392 (556)
...+.|..+|..++.. ..+.. .......+++.+ +|+..++... ++.|..||..++.
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555588888776542 22221 123467899999 8876666432 3679999988766
Q ss_pred EEEeecccCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCe----eeeeecCCceEEEEEcCCCCEEEEEEc------
Q 008717 393 LESWKGQKTLRISDMAITDDGKRIISI-CREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLI------ 461 (556)
Q Consensus 393 ~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~I~i~d~~~~~----~~~~~~~~~i~~v~~sp~~~~l~~~~~------ 461 (556)
+....... .....++++|+|+.++.+ +..+.|..||+.... ..+....+ ...++++++|++.++...
T Consensus 177 ~~~~~~~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKEL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCC-ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 55443322 256789999999866655 556899999988532 22222334 788999999987666554
Q ss_pred ----CCeEEEEEcCCCCcceeEEeCccC----ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 462 ----NQEIHLWSIESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 462 ----dg~I~lwd~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
.+.|..+|.. + +.+..+....+ .... +++ .++.+.++...++.|.++++...
T Consensus 255 ~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~--~~~--~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQ--IQE--HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCE--EEE--ETTEEEEECSSCSEEEEEEC---
T ss_pred cCCCccEEEEECCC-C-CEEEEEECCCCCccccceE--EEE--eCCEEEEeecCCCceEEEecccc
Confidence 4668888864 4 66666654321 2222 333 36666666667888888887643
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=2.7e-08 Score=98.51 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=131.6
Q ss_pred ccCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEeecCCeeEEEEEecC------CCCCeEEEEeCCCCCEE-EEEe-
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSG------HRKPVFTVSWSPNDHQL-LTCG- 336 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l-~s~~- 336 (556)
+|...+..++++++|+++++-.. ++.|.+||..++. ....+.. +...+..+++++++..+ ++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 46678999999999986665433 5789999988652 2333321 22456889999865555 4444
Q ss_pred --CCCcEEEEECCCCcEEEEEecC-----------------------------CCceEEEEEecCCCeEEEEeCCC-cEE
Q 008717 337 --QEEAIRRWDVNSGECLHVYEKT-----------------------------GVGLISCGWFLDGGGIFAGMTDK-SIC 384 (556)
Q Consensus 337 --~dg~i~iwd~~~~~~~~~~~~~-----------------------------~~~v~~i~~~~~~~~l~~~~~dg-~i~ 384 (556)
.++.|.+||..+++..+.+..| ...+..++|+||++.++++..++ .+.
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 5789999999988876655331 02358899999999888887766 555
Q ss_pred EEECC---CCeE--------EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee--cCCceEEEEEc
Q 008717 385 LWDLD---GREL--------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE--EEEVITSFSLS 450 (556)
Q Consensus 385 vwd~~---~~~~--------~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~--~~~~i~~v~~s 450 (556)
.++.. ...+ ..... +.+....++++++|..+++...++.|.+||..+++ ..... ....+++++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 55532 1100 01111 12256789999999999998889999999985555 22222 24568899999
Q ss_pred CCCCEEEEEEcCCeEEEE
Q 008717 451 KDNKYLLVNLINQEIHLW 468 (556)
Q Consensus 451 p~~~~l~~~~~dg~I~lw 468 (556)
+++.++++.+..+.+.+|
T Consensus 300 ~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TTSCEEEEECCGGGSGGG
T ss_pred CCCcEEEEeCcccccccc
Confidence 999877776654444333
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=7.9e-07 Score=84.40 Aligned_cols=204 Identities=8% Similarity=-0.045 Sum_probs=135.0
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCc
Q 008717 273 DEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGE 350 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 350 (556)
..+..++|++++..|+.+ ..++.|.+++...... ...+.........+++++++..|+.+. ..+.|.+++.+...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 457899999976655544 4578899999874321 122222234678999999766666554 46789999986543
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeC---CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~ 426 (556)
..............++++|++..++.+.. .+.|..+++++.....+..........+++++++..|+.+. ..+.|.
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 32223222345789999997777666654 36899999876544433322233689999999877665554 567899
Q ss_pred EEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeC
Q 008717 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
++|..... ............+++. +..|+++. ..+.|..+|..++ +.+..+..
T Consensus 193 ~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~ 247 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHP 247 (267)
T ss_dssp EEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEECC
T ss_pred EEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEEcc
Confidence 99998655 3333333445667664 45555554 4689999999887 77777753
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=1.6e-07 Score=101.60 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=132.7
Q ss_pred EEEeCCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEEecCC---------CceEEEEEecCC--
Q 008717 322 TVSWSPNDHQLLTCGQEE-------------------AIRRWDVNSGECLHVYEKTG---------VGLISCGWFLDG-- 371 (556)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~~~~-- 371 (556)
.++++|++..++.+..++ .|..+|..+|+.+..++... ....-+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 567888888888887664 59999999999988876421 122223344477
Q ss_pred -CeEEEEeCCCcEEEEECCCCeEEEeec-cc----------CCCe------------------------eEEEEccCCCE
Q 008717 372 -GGIFAGMTDKSICLWDLDGRELESWKG-QK----------TLRI------------------------SDMAITDDGKR 415 (556)
Q Consensus 372 -~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~----------~~~v------------------------~~v~~s~~g~~ 415 (556)
..++.++.+|.++++|.+++++..... .. ...+ ..++++|++.+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 678999999999999998766532221 10 0001 25789999888
Q ss_pred EEEEeC-------------------------------------------CCeEEEEECCCCe-eeeeecCCceEEEEEcC
Q 008717 416 IISICR-------------------------------------------EAAILLLDREANF-ERWIEEEEVITSFSLSK 451 (556)
Q Consensus 416 l~~~~~-------------------------------------------d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp 451 (556)
+++... .+.|..||+.+++ .-...+..++....+..
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence 877543 2789999999998 33334455555666777
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcE-EEEeeC----------------CCcEEEE
Q 008717 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF-IASGSE----------------DSQNVPE 514 (556)
Q Consensus 452 ~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~sgs~----------------dg~v~iw 514 (556)
++..+++++.||.+++||.+++ +.+.++...... ...-+.| ..+|+. +++.+. .+.+.+|
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~-~~~p~~y-~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f 563 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGV-VAAPSTY-MVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF 563 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCCc-ccCCEEE-EeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence 8888999999999999999999 888888754421 1111333 467764 444222 4678888
Q ss_pred EcCC
Q 008717 515 ILLS 518 (556)
Q Consensus 515 d~~~ 518 (556)
.+..
T Consensus 564 ~l~~ 567 (677)
T 1kb0_A 564 VVGG 567 (677)
T ss_dssp EETC
T ss_pred eccc
Confidence 8774
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.89 E-value=2.6e-07 Score=95.65 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=133.1
Q ss_pred CCCEEEEEeCC-CcEEEEECCCCcEEEEEecC-CCceEEEEE-e-cCCCeEEEEe------------------CCCcEEE
Q 008717 328 NDHQLLTCGQE-EAIRRWDVNSGECLHVYEKT-GVGLISCGW-F-LDGGGIFAGM------------------TDKSICL 385 (556)
Q Consensus 328 ~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~~~~~l~~~~------------------~dg~i~v 385 (556)
||++++.+..+ +.|.+.|+.+.++...+.-. ...+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 78888877664 56999999999988866533 345788887 4 8999999985 2457999
Q ss_pred EECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCC--------------------------------------eEEE
Q 008717 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA--------------------------------------AILL 427 (556)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--------------------------------------~I~i 427 (556)
.|.++.++........ ....++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999876654443322 567888999999998888542 4777
Q ss_pred EECCC--Ce--eeeeecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCC-----------cceeEEeCccCceeEEE
Q 008717 428 LDREA--NF--ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDP-----------KLVSRYKGHKRARFVIR 491 (556)
Q Consensus 428 ~d~~~--~~--~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~-----------~~~~~~~~~~~~~~~i~ 491 (556)
.|.++ +. ...+.......++.++|||+++++++ .+..|.++|+.+.. ..+.......++ ..
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP---~h 335 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP---LH 335 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE---EE
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc---ce
Confidence 77776 32 33444455677899999999988776 46789999998541 123333333333 45
Q ss_pred EeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 492 SCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 492 ~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
..| +++|...++.--|++|.+||+.+
T Consensus 336 ~aF-~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 336 TAF-DGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEE-CTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEE-CCCCeEEEEEecCCcEEEEEhhH
Confidence 677 99994344455699999999987
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.88 E-value=1e-06 Score=88.11 Aligned_cols=229 Identities=6% Similarity=-0.018 Sum_probs=142.0
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 355 (556)
++..+++++.++.|..+|..++... -...+... ...+.+. ...++..++.++.++.|..+|..+|+.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI-WSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE-EEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee-eeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3567778888899999999876421 12222111 1223221 2224667888889999999999999988776
Q ss_pred ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCe------eEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI------SDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v------~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
............ .+..+++++.++.|..+|.++++..-...... .+ ...... +..+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 644322112222 24578888899999999998765443322221 11 222222 45678888899999999
Q ss_pred CCCCeeeee-ecCCc--------eEEEEEcC--CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCC
Q 008717 430 REANFERWI-EEEEV--------ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (556)
Q Consensus 430 ~~~~~~~~~-~~~~~--------i~~v~~sp--~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (556)
..+++.... ....+ +..+.-.| .+..+++++.++.+..+|..++ +.+....... .. .... +
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~~--~~--~~~~---~ 276 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELGS--VN--DFIV---D 276 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCCC--EE--EEEE---E
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCCC--CC--CceE---E
Confidence 998873222 11110 00011111 2467778888999999999988 6665554221 11 1222 4
Q ss_pred CcEEEEeeCCCcEEEEEcCCCceeeeec
Q 008717 499 QAFIASGSEDSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 499 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 526 (556)
+..|+.++.++.|+.+|..+++......
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 5678888899999999999998765443
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=1.1e-06 Score=82.58 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=133.2
Q ss_pred ceeEEecccCC--cEEEEEEccCCCEEEEEeC--CCcEEEEEeecCCeeEEEEEec--CCCCCeEEEEeCCCCCEEEEE-
Q 008717 263 QTLQILEAHSD--EVWFLQFSHDGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPNDHQLLTC- 335 (556)
Q Consensus 263 ~~~~~l~~h~~--~V~~~~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~- 335 (556)
+.+.++. |.. ....++|+|++.+.++.+. ++.|.++|..++. ....+. .+. ....+++. ++.|+.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~---v~~~i~l~~~~-fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK---VENIHKMDDSY-FGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC---EEEEEECCTTC-CEEEEEEE--TTEEEEEE
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC---EEEEEecCCCc-ceEEEEEe--CCEEEEEE
Confidence 4445553 443 3689999998755555443 5799999999874 333332 222 22345554 4455544
Q ss_pred eCCCcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEE-Eeeccc----CCCeeEEEE
Q 008717 336 GQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE-SWKGQK----TLRISDMAI 409 (556)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~----~~~v~~v~~ 409 (556)
-.++.+.++|..+.+.+..+... .. ...+++||+.++++..++.|.++|..+.++. .+.... -..++.+.|
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 45789999999999999888644 22 2345668888888888899999999875543 333221 114678888
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCe-eeeeec--------------CCceEEEEEcCCCCEEEE-EEcCCeEEEEEcCCC
Q 008717 410 TDDGKRIISICREAAILLLDREANF-ERWIEE--------------EEVITSFSLSKDNKYLLV-NLINQEIHLWSIESD 473 (556)
Q Consensus 410 s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~--------------~~~i~~v~~sp~~~~l~~-~~~dg~I~lwd~~~~ 473 (556)
. +|..++....++.|.+.|..+++ ...+.. ....+.++|+|+++.+++ +...+.+...++...
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 8 77555555567899999999988 333321 135689999999876555 546788888887654
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.88 E-value=2.4e-07 Score=100.48 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=122.0
Q ss_pred EEEeCCCCCEEEEEeCCCc-------------------EEEEECCCCcEEEEEecCC---------CceEEEEEecCCC-
Q 008717 322 TVSWSPNDHQLLTCGQEEA-------------------IRRWDVNSGECLHVYEKTG---------VGLISCGWFLDGG- 372 (556)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~~~~~- 372 (556)
.++++|++..++.+..++. |..||..+|+.+-.++... .++.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5778888889998887763 9999999999988876421 1222223333565
Q ss_pred --eEEEEeCCCcEEEEECCCCeEEEeecc-c-------------------------C-------------CCeeEEEEcc
Q 008717 373 --GIFAGMTDKSICLWDLDGRELESWKGQ-K-------------------------T-------------LRISDMAITD 411 (556)
Q Consensus 373 --~l~~~~~dg~i~vwd~~~~~~~~~~~~-~-------------------------~-------------~~v~~v~~s~ 411 (556)
.++.++.+|.++++|.+++++...... . . ..-..++|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 788899999999999987765421100 0 0 0112378999
Q ss_pred CCCEEEEEeC---------------------------------------------CCeEEEEECCCCe-eeeeecCCceE
Q 008717 412 DGKRIISICR---------------------------------------------EAAILLLDREANF-ERWIEEEEVIT 445 (556)
Q Consensus 412 ~g~~l~~~~~---------------------------------------------d~~I~i~d~~~~~-~~~~~~~~~i~ 445 (556)
+...+++... +|.|+.||+.+++ .-...+..++.
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 478 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN 478 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence 8887776532 3779999999998 33333344444
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCc-EEEEe
Q 008717 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASG 505 (556)
Q Consensus 446 ~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~sg 505 (556)
.-.++..+.++++++.||.++.||.+++ +.+.+++....... .-+.| ..+|+ ||++.
T Consensus 479 ~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~~~-~p~ty-~~~G~qyv~~~ 536 (689)
T 1yiq_A 479 GGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGVMA-APVTY-SVDGEQYVTFM 536 (689)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCS-CCEEE-EETTEEEEEEE
T ss_pred CccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCccc-CceEE-EECCEEEEEEE
Confidence 4466667889999999999999999999 88888875533211 11333 55776 44443
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=1.7e-07 Score=91.76 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=140.9
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceE
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 363 (556)
+..|..++.++.+..+|.. +. .......+...+.++...+++. +..++.++.|..+|.. ++....+......+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GT---EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SC---EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred CCEEEEEecCCEEEEEcCC-CC---EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 4557778888999999877 42 2233334445566667776776 5557778999999998 887777765555666
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeeecCC
Q 008717 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEE 442 (556)
Q Consensus 364 ~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~~~ 442 (556)
++...+++. +.+++ +.|..+|..+........ ....+.++..+++|. +.+++.++.|..+|..... ........
T Consensus 181 ~~~~d~~g~-l~v~t--~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 181 AASIGKDGT-IYFGS--DKVYAINPDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEKWRFKTGKR 255 (330)
T ss_dssp CCEECTTCC-EEEES--SSEEEECTTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEEEEEECSSC
T ss_pred eeEEcCCCE-EEEEe--CEEEEECCCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEeEEeeCCCC
Confidence 777766766 44455 789999943444433332 334688889988876 5556678888888864444 22223333
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCc
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+.++.+.+++ .|.+++.+|.|..+|. ++ +.+..+......+. ..+..++|. |..|+.+|.+++......+
T Consensus 256 ~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~---~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 256 IESSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWIIA---TPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CCSCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCCCS---CCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred ccccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCcccc---ceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 34556666666 4667787889999995 55 56666654333322 222246666 5668999999998766543
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=5.1e-06 Score=80.56 Aligned_cols=236 Identities=10% Similarity=0.047 Sum_probs=141.5
Q ss_pred cceeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC--
Q 008717 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-- 339 (556)
Q Consensus 262 ~~~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-- 339 (556)
.+.+..+... .....++|+++|+++++-..++.|..||... ....... .......+++.++|+.+++.....
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHAT---VEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEE---CSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEe---CCCCceeEEEcCCCcEEEEeccCCcc
Confidence 3444555432 5678999999999777766788998888763 2222222 235688999999999666554332
Q ss_pred cEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe--ec--------ccCCCeeEEE
Q 008717 340 AIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW--KG--------QKTLRISDMA 408 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~--------~~~~~v~~v~ 408 (556)
.|..+|..+++........ ......++..+++..+++-..++.|+++|..++....+ .. ......+.+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 4777787788754333221 22234455444444444444588999999875422111 10 111134555
Q ss_pred EccCCCEEEEE-eCCCeEEEEECCC-Ce---eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccee--EEe
Q 008717 409 ITDDGKRIISI-CREAAILLLDREA-NF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--RYK 481 (556)
Q Consensus 409 ~s~~g~~l~~~-~~d~~I~i~d~~~-~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~--~~~ 481 (556)
+++++.++.+ ...+.|..||+.. +. ............++++++|+++++....+.|.++|.. + +... .+.
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~~~~~~ 251 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTIIAQAE 251 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEEEECGG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEEEeecc
Confidence 8888766554 4567899999875 32 2222222456779999999887776667899999975 4 4322 222
Q ss_pred CccCceeEEEEeecC--CCCcEEEEeeCCC
Q 008717 482 GHKRARFVIRSCFGG--FEQAFIASGSEDS 509 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s--~~~~~l~sgs~dg 509 (556)
..... ...++|.. ++++.|+.++..+
T Consensus 252 ~~~~~--p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIG--STAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTT--EEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCC--ceEEEEecccCCCCEEEEECCCC
Confidence 22122 24466633 7877766665543
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=1.2e-06 Score=87.68 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=125.4
Q ss_pred cEEEEEEccCCCEEEEEeCC------CcEEEEEeecCCeeEEEEEecC--CC-CCeEEEEeCCCCCEEEEEe--------
Q 008717 274 EVWFLQFSHDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSG--HR-KPVFTVSWSPNDHQLLTCG-------- 336 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~--h~-~~v~~l~~s~~~~~l~s~~-------- 336 (556)
.-..+..+|+| .++++..+ |.|.++|..+. +.+.++.. .. .--..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccc
Confidence 45677888999 66665544 78999998866 34455542 22 2234588899999888875
Q ss_pred -----------CCCcEEEEECCCCcEEEEEecCC--CceEEEEE--ecCCCeEEEEe------CCCcEEEEECCCCeEEE
Q 008717 337 -----------QEEAIRRWDVNSGECLHVYEKTG--VGLISCGW--FLDGGGIFAGM------TDKSICLWDLDGRELES 395 (556)
Q Consensus 337 -----------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~--~~~~~~l~~~~------~dg~i~vwd~~~~~~~~ 395 (556)
.+.+|.+||+.+++.+.++.... .....+.| +|+++++++++ .+++|.+|..+.+....
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~ 294 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA 294 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence 36799999999998888887531 23445555 99999988877 45688776654332211
Q ss_pred ee-----cc---------------cCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCC---e-eeeeecC---------
Q 008717 396 WK-----GQ---------------KTLRISDMAITDDGKRIISICR-EAAILLLDREAN---F-ERWIEEE--------- 441 (556)
Q Consensus 396 ~~-----~~---------------~~~~v~~v~~s~~g~~l~~~~~-d~~I~i~d~~~~---~-~~~~~~~--------- 441 (556)
.. .. ....+..+.+++||++|.++.. .+.|.+||+... + ...+...
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~ 374 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP 374 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCT
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccc
Confidence 11 10 0135789999999999887765 678999998633 2 2222111
Q ss_pred ------CceEEEEEcCCCCEEEEEE
Q 008717 442 ------EVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 442 ------~~i~~v~~sp~~~~l~~~~ 460 (556)
+....+.++|||++|+++.
T Consensus 375 ~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 375 AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1367899999999999887
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.82 E-value=2.4e-06 Score=80.15 Aligned_cols=204 Identities=8% Similarity=0.012 Sum_probs=134.4
Q ss_pred EEEEecCCCC--CeEEEEeCCCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCC-ceEEEEEecCCCeEEEEe-CCCc
Q 008717 309 LKHRLSGHRK--PVFTVSWSPNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGV-GLISCGWFLDGGGIFAGM-TDKS 382 (556)
Q Consensus 309 ~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~-~dg~ 382 (556)
.+.++. |.. ....+.|++++..+++.+. ++.|.++|+.+++.+..+..... ....+++. ++.++.+. .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 445553 443 3579999998755555443 57999999999999888763322 22345554 55655554 6789
Q ss_pred EEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee---c---CCceEEEEEcCCCCE
Q 008717 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---E---EEVITSFSLSKDNKY 455 (556)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~---~---~~~i~~v~~sp~~~~ 455 (556)
+.++|..+.++........ -....+++||+.++++..++.|.++|..+.+ ...+. . -..++.+.|. +|..
T Consensus 88 v~viD~~t~~v~~~i~~g~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQM--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCS--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCC--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 9999998766544332221 1224466788877777788999999999877 22222 1 1236778888 7755
Q ss_pred EEEEEcCCeEEEEEcCCCCcceeEEeCcc-----------CceeEEEEeecCCCCc-EEEEeeCCCcEEEEEcCCCc
Q 008717 456 LLVNLINQEIHLWSIESDPKLVSRYKGHK-----------RARFVIRSCFGGFEQA-FIASGSEDSQNVPEILLSES 520 (556)
Q Consensus 456 l~~~~~dg~I~lwd~~~~~~~~~~~~~~~-----------~~~~~i~~~~~s~~~~-~l~sgs~dg~v~iwd~~~~~ 520 (556)
.+....++.|.+.|..++ +.+..+.... .......+.+ +|+++ +++++...+.|++.++....
T Consensus 165 yvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~-~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAW-DQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEE-ETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEE-cCCCCEEEEECCCCCeEEEEEEeccc
Confidence 544445789999999998 8888876421 0112234556 88875 55666678899999887653
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.80 E-value=1.5e-07 Score=92.06 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=141.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 008717 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (556)
.+...+.++...++|. |..++.+ +..+|.. +... ..+...........+. +..+..++.++.|..+|.. +
T Consensus 57 ~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~-g~~~---~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g 126 (330)
T 3hxj_A 57 SGEIIECRPSIGKDGT-IYFGSDK--VYAINPD-GTEK---WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G 126 (330)
T ss_dssp GGGEEEECCEETTTTE-ECCSSCE--EEEECCC-GGGG---GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S
T ss_pred cCCCcccceEEecCCc-EEEecCc--EEEECCC-CcEE---EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C
Confidence 3444567777777776 4444444 7778753 2211 1111111112222333 5567778888999999998 8
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
+...........+.++...+++. +++++.++.|..+|..+........ ....+.++.+.+++..++ ++ +.|..||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~d~~g~l~v-~t--~~l~~~d 201 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKT-NDAITSAASIGKDGTIYF-GS--DKVYAIN 201 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEEC-SSCCCSCCEECTTCCEEE-ES--SSEEEEC
T ss_pred CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEec-CCCceeeeEEcCCCEEEE-Ee--CEEEEEC
Confidence 77766665555556666666665 6677888999999998443333332 333677888888887544 44 8899999
Q ss_pred CCCCe--eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
.++. .........+.++..+++|. |.+++.++.|..+|. ++ +.+..+......... ... .+++ .|+.++.
T Consensus 202 -~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~--~~~-~~~g-~l~v~t~ 273 (330)
T 3hxj_A 202 -PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIESS--PVI-GNTD-TIYFGSY 273 (330)
T ss_dssp -TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS-CEEEEEECSSCCCSC--CEE-CTTS-CEEEECT
T ss_pred -CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CC-CEeEEeeCCCCcccc--ceE-cCCC-eEEEecC
Confidence 5554 23333445688888988875 555666888888884 44 455555543332111 222 3455 5667888
Q ss_pred CCcEEEEEcCCCceeee
Q 008717 508 DSQNVPEILLSESVAAA 524 (556)
Q Consensus 508 dg~v~iwd~~~~~~~~~ 524 (556)
+|.|+.+|. +++....
T Consensus 274 ~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 274 DGHLYAINP-DGTEKWN 289 (330)
T ss_dssp TCEEEEECT-TSCEEEE
T ss_pred CCCEEEECC-CCcEEEE
Confidence 989999996 5555443
No 245
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.73 E-value=3.1e-08 Score=73.90 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH
Q 008717 60 VIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS 97 (556)
Q Consensus 60 ~i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~ 97 (556)
.++++||++||++||+|.||.+||++|++||+|.....
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~ 39 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNI 39 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCC
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcccc
Confidence 37899999999999999999999999999999887653
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.70 E-value=2.8e-06 Score=78.87 Aligned_cols=189 Identities=12% Similarity=0.153 Sum_probs=123.8
Q ss_pred ceeEEecccCCc--EEEEEEccCCCEEEEEeCCC--cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-C
Q 008717 263 QTLQILEAHSDE--VWFLQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-Q 337 (556)
Q Consensus 263 ~~~~~l~~h~~~--V~~~~~sp~g~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~ 337 (556)
+.++++ .|... ...+.|+ ++.+..+.+.+| .|+++|+.++.. ...+.-. .........++++.|.... .
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv---~~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT---LQQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE---EEEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE---EEEEecC-CccceeEEEEeCCEEEEEEee
Confidence 444555 35443 5789998 676666766665 899999998743 3333322 2333322233455555544 5
Q ss_pred CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEe-ecc----cCCCeeEEEEccC
Q 008717 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQ----KTLRISDMAITDD 412 (556)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~v~~s~~ 412 (556)
++.+.+||..+.+.+.++...... + .+.+|+..++.+..++.|.++|..+.++... ... .-..++.+.|. +
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG-~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEG-W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCC-C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECccCcEEEEEECCCCc-e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 789999999999999998854322 2 3345788888877778899999987544332 221 11245567776 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-eeeeec-------------CCceEEEEEcCCCCEEEEEEc
Q 008717 413 GKRIISICREAAILLLDREANF-ERWIEE-------------EEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~-~~~~~~-------------~~~i~~v~~sp~~~~l~~~~~ 461 (556)
|...+..-.++.|.+.|..+++ ...+.. ....+.++++|+++.|++.+.
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 7655555568899999999988 333321 235689999999888777774
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.68 E-value=1.3e-05 Score=78.25 Aligned_cols=202 Identities=9% Similarity=0.089 Sum_probs=129.0
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--------------------CCceEEEEEecCCCeEEEEe
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--------------------GVGLISCGWFLDGGGIFAGM 378 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~i~~~~~~~~l~~~~ 378 (556)
...+++|.++++.++++..++.|..||..+++.. .+... ...+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3467889999987888888999999998766543 23210 12478899997344566665
Q ss_pred CCCcEEEEECCCCeEEEeecc----cCCCeeEEEEcc-CCCEEEEEeC-----------------CCeEEEEECCCCe-e
Q 008717 379 TDKSICLWDLDGRELESWKGQ----KTLRISDMAITD-DGKRIISICR-----------------EAAILLLDREANF-E 435 (556)
Q Consensus 379 ~dg~i~vwd~~~~~~~~~~~~----~~~~v~~v~~s~-~g~~l~~~~~-----------------d~~I~i~d~~~~~-~ 435 (556)
..+.|..+|..++.+..+... ....+..+++++ +|+..++... ++.|..||..++. .
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 556688899876654433221 112578999999 9987666432 3679999988776 3
Q ss_pred eeeecCCceEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCC-cceeEEeCccCceeEEEEeecCCCCcEEEEeeC------
Q 008717 436 RWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------ 507 (556)
Q Consensus 436 ~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~I~lwd~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~------ 507 (556)
...........++++|+|++|+++ +.++.|..|++.... .....+..... .-.++. .++|++.++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~-d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKR-NADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---EEEEEE-CTTSCEEEEEEEETTSST
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---CCCeEE-CCCCCEEEEecCcccccc
Confidence 333333456789999999977666 456899999987531 01122211111 122444 788887666544
Q ss_pred ----CCcEEEEEcCCCceeeeec
Q 008717 508 ----DSQNVPEILLSESVAAAAS 526 (556)
Q Consensus 508 ----dg~v~iwd~~~~~~~~~~~ 526 (556)
.+.|..+|.. ++......
T Consensus 255 ~~~~~~~v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-GNILEVIP 276 (322)
T ss_dssp TSCEEEEEEEECTT-SCEEEEEE
T ss_pred cCCCccEEEEECCC-CCEEEEEE
Confidence 4678888865 55444443
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.68 E-value=6.8e-06 Score=90.15 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=138.3
Q ss_pred ccCC-cEEEEEEc-cCCCEEEEEeC-CC----cEEEEEeecC-CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC---
Q 008717 270 AHSD-EVWFLQFS-HDGKYLASSSK-DQ----SAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (556)
Q Consensus 270 ~h~~-~V~~~~~s-p~g~~las~s~-dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 338 (556)
+|.- .+...+|| |||++||.+.. +| +|+++|+.++ .... ..+. .....+.|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 3443 68889999 99999986543 22 4999999875 3211 1111 113467899999988887765
Q ss_pred --CcEEEEECCCCc--EEEEEec-CCCceEEEEEecCCCeEEEEeC---CCcEEEEECCCC--eE--EEeecccCCCeeE
Q 008717 339 --EAIRRWDVNSGE--CLHVYEK-TGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGR--EL--ESWKGQKTLRISD 406 (556)
Q Consensus 339 --g~i~iwd~~~~~--~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~---dg~i~vwd~~~~--~~--~~~~~~~~~~v~~ 406 (556)
..|+++++.++. ....+.. .......+.|+|||++|+..+. ...|+++|+.+. .. ..+.........+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 258888988764 2334432 2334567899999999887663 346888999764 33 4444333334555
Q ss_pred EEEccCCCEEEEEe-CC----CeEEEEECCC-Ce-ee-eeecCC--ceEEEEEcCCCCEEEEEEcCCe--EEEEEc----
Q 008717 407 MAITDDGKRIISIC-RE----AAILLLDREA-NF-ER-WIEEEE--VITSFSLSKDNKYLLVNLINQE--IHLWSI---- 470 (556)
Q Consensus 407 v~~s~~g~~l~~~~-~d----~~I~i~d~~~-~~-~~-~~~~~~--~i~~v~~sp~~~~l~~~~~dg~--I~lwd~---- 470 (556)
+.|+. |..|+..+ .+ ..|..+|+.+ .. .. ++.+.. .+..+.+. .+.++++...++. |.++|+
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQD 402 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTT
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccccc
Confidence 55543 55554444 33 3688888775 33 34 455544 34555554 2334455566675 555665
Q ss_pred ---CCCCcceeEEeCccCceeEEEEeec---CCCCc-EEEEeeCC---CcEEEEEcCCCce
Q 008717 471 ---ESDPKLVSRYKGHKRARFVIRSCFG---GFEQA-FIASGSED---SQNVPEILLSESV 521 (556)
Q Consensus 471 ---~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~-~l~sgs~d---g~v~iwd~~~~~~ 521 (556)
.++ +....+.... ....+.+... ++++. ++++.+.. ..++.+|+.+++.
T Consensus 403 ~~~~~g-~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 403 GVFKAG-TGLREVVMEE-PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp SCCCTT-TCCEECCCCC-SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccCC-ccceEECCCC-ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 333 2133332111 1122223210 23443 44444433 4677888877654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=4.5e-06 Score=90.18 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=148.9
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCC-CCeEEEEeCC--CCCEEEEEeC------CCcEEEEECCCCcEEEE
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSP--NDHQLLTCGQ------EEAIRRWDVNSGECLHV 354 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 354 (556)
+..|+.++.|+.|..+|..++.. +..+.... .....+.-+| .+..++++.. +|.|..+|..+|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~---~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKA---IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCE---EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCE---eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45788888899999999987743 22222211 0001111112 2345555543 58999999999999887
Q ss_pred EecCC-------------------------------CceEEEEEecCCCeEEEEeCCCc-------------------EE
Q 008717 355 YEKTG-------------------------------VGLISCGWFLDGGGIFAGMTDKS-------------------IC 384 (556)
Q Consensus 355 ~~~~~-------------------------------~~v~~i~~~~~~~~l~~~~~dg~-------------------i~ 384 (556)
+.... .....+++.|+...++.++.++. |.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75310 00123678888888988887663 99
Q ss_pred EEECCCCeEEEeecc--cC-------CCeeEEEEccCCC---EEEEEeCCCeEEEEECCCCeeee-eec-----------
Q 008717 385 LWDLDGRELESWKGQ--KT-------LRISDMAITDDGK---RIISICREAAILLLDREANFERW-IEE----------- 440 (556)
Q Consensus 385 vwd~~~~~~~~~~~~--~~-------~~v~~v~~s~~g~---~l~~~~~d~~I~i~d~~~~~~~~-~~~----------- 440 (556)
.+|.++++..-.... +. .++....+..+|+ .++.++.+|.++++|..+++... ...
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999987765433221 11 1233333344665 68888999999999999987221 000
Q ss_pred --CCc------------------------eEEEEEcCCCCEEEEEE----------------------------------
Q 008717 441 --EEV------------------------ITSFSLSKDNKYLLVNL---------------------------------- 460 (556)
Q Consensus 441 --~~~------------------------i~~v~~sp~~~~l~~~~---------------------------------- 460 (556)
..+ -..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 000 01267888777666532
Q ss_pred --cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecCC
Q 008717 461 --INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASSL 528 (556)
Q Consensus 461 --~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 528 (556)
.+|.|..||+.++ +.+.+...+... .. ... ...+.+|+.++.||.|+.||..+++++......
T Consensus 434 ~~~~g~l~A~D~~tG-~~~W~~~~~~~~-~~--~~~-~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ-KAAWKVPYPTHW-NG--GTL-STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp GGCEEEEEEEETTTT-EEEEEEEESSSC-CC--CEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCccceEEEEeCCCC-cEEEEccCCCCC-cC--cee-EeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 2378999999998 777666543322 11 111 336778888999999999999999987665433
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=1.4e-05 Score=74.20 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=123.0
Q ss_pred EEEEecCCCCC--eEEEEeCCCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe-CCCcE
Q 008717 309 LKHRLSGHRKP--VFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSI 383 (556)
Q Consensus 309 ~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i 383 (556)
.+.++ .|... ...+.|+ ++..+.+++.+| .|+++|+.+++.+..+.... ........++++.++... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 44455 34443 4788998 677777777766 89999999999988886543 233333334455666555 57899
Q ss_pred EEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeee---ecC---CceEEEEEcCCCCEE
Q 008717 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI---EEE---EVITSFSLSKDNKYL 456 (556)
Q Consensus 384 ~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~---~~~---~~i~~v~~sp~~~~l 456 (556)
.+||.++.++........ ....+++|++.++.+..++.|.++|..+.+ ...+ ... ..++.+.|. +|+..
T Consensus 110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999998765544433322 223445678877777778889999999877 2222 112 334567776 67655
Q ss_pred EEEEcCCeEEEEEcCCCCcceeEEeCcc----------CceeEEEEeecCCCCcEEEEeeC
Q 008717 457 LVNLINQEIHLWSIESDPKLVSRYKGHK----------RARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
+..-.++.|.+.|..++ +.+..+.... .......+++ +|+++.|+..+.
T Consensus 186 an~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~-dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAW-DKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEE-ETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEE-cCCCCEEEEECC
Confidence 55546889999999998 8887775421 1111233555 887776666554
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=9.4e-05 Score=73.01 Aligned_cols=236 Identities=8% Similarity=-0.046 Sum_probs=144.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEE
Q 008717 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLH 353 (556)
Q Consensus 275 V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 353 (556)
..|.+..+++ +|+.+. ...|+..++... .. ...+. ....+..++|++.+..|+.+. ..+.|..+++..+....
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~-~~--~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRS-EY--TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSC-CE--EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCC-ee--EEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3455555543 444433 345777776533 22 22222 334578999998766666555 46789999988765444
Q ss_pred EEecCCCceEEEEEecCCCeEE-EEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CC-CeEEEEEC
Q 008717 354 VYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-RE-AAILLLDR 430 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d-~~I~i~d~ 430 (556)
.+.........+++.+.+..|+ +-...+.|.+.++++.....+..........++++|.+..++.+. .. +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4433334457889987555554 445567899999987654444433334789999999766655544 34 78999998
Q ss_pred CCCe-eeee-ecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 431 EANF-ERWI-EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 431 ~~~~-~~~~-~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
.... ..+. ..-...+.++++|++..|+.+. ..+.|..+|+... .....+.........+.+ + ++.+.++-..
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav-~---~~~ly~td~~ 264 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-F---EDSLYWTDWH 264 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE-E---TTEEEEEETT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE-E---CCEEEEecCC
Confidence 7655 2222 2344578999999777666665 4578999998754 322223222222233322 2 4556666666
Q ss_pred CCcEEEEEcCCCce
Q 008717 508 DSQNVPEILLSESV 521 (556)
Q Consensus 508 dg~v~iwd~~~~~~ 521 (556)
.+.|..++..+++.
T Consensus 265 ~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 265 TKSINSANKFTGKN 278 (349)
T ss_dssp TTEEEEEETTTCCS
T ss_pred CCeEEEEEccCCCc
Confidence 78888888555543
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=1.5e-05 Score=84.26 Aligned_cols=237 Identities=12% Similarity=0.018 Sum_probs=144.1
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCC--CCCEEEEEeC------CCcEEEEECCCCcEEEEE
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQ------EEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~ 355 (556)
+..++.++.|+.+..+|..++... -...+..+... ..+.-+| .+..+++++. ++.|..+|..+|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~-W~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKIN-WEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE-EEecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 557788888999999999876432 22222221100 0011112 1345555554 789999999999988777
Q ss_pred ecCCCc-------------------------------------e-EEEEEecCCCeEEEEeCC----------------C
Q 008717 356 EKTGVG-------------------------------------L-ISCGWFLDGGGIFAGMTD----------------K 381 (556)
Q Consensus 356 ~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~d----------------g 381 (556)
...... + ..+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 543211 0 135666766777776642 2
Q ss_pred cEEEEECCCCeEEEeec-c-cC-------CCeeEEEEccCCC---EEEEEeCCCeEEEEECCCCeeee-eecC-------
Q 008717 382 SICLWDLDGRELESWKG-Q-KT-------LRISDMAITDDGK---RIISICREAAILLLDREANFERW-IEEE------- 441 (556)
Q Consensus 382 ~i~vwd~~~~~~~~~~~-~-~~-------~~v~~v~~s~~g~---~l~~~~~d~~I~i~d~~~~~~~~-~~~~------- 441 (556)
.|..+|.++++..-... . +. ....-+...++|+ .++.++.+|.++++|..+++... ....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 59999998766543222 1 10 0111122334774 56778899999999999987211 1110
Q ss_pred -------Cce--------------------------EEEEEcCCCCEEEEEEc---------------------------
Q 008717 442 -------EVI--------------------------TSFSLSKDNKYLLVNLI--------------------------- 461 (556)
Q Consensus 442 -------~~i--------------------------~~v~~sp~~~~l~~~~~--------------------------- 461 (556)
.++ ..++++|+...+++.+.
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 24678888877777643
Q ss_pred ----------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeeecC
Q 008717 462 ----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAASS 527 (556)
Q Consensus 462 ----------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 527 (556)
++.|..||+.++ +.+.++...... .. ... ...+..++.++.||.|+.||..+++++.....
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~-~~--~~~-~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAA-WG--GTL-YTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC-CEEEEEEESSCC-CS--BCE-EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCccccCCCCCCeEEEEECCCC-CEEEEecCCCCc-cc--eeE-EECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 478999999988 766666433221 11 111 22456777799999999999999998766543
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00017 Score=70.11 Aligned_cols=224 Identities=8% Similarity=-0.065 Sum_probs=138.6
Q ss_pred EEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCC----CcEEEEEecCCCc
Q 008717 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNS----GECLHVYEKTGVG 361 (556)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~ 361 (556)
|+.+. ...|+..|+.+.... ..+. ....+..++|++++..|+.+. .++.|..+++.+ ......+...-..
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~---~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYT---SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCE---EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEC-CCeEEEEECCCcceE---ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 44443 346888888754322 2222 345678999998776666555 468899999875 2222223222234
Q ss_pred eEEEEEecCCCeEE-EEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC--CeEEEEECCCCeee-e
Q 008717 362 LISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--AAILLLDREANFER-W 437 (556)
Q Consensus 362 v~~i~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d--~~I~i~d~~~~~~~-~ 437 (556)
...+++.+.+..|+ +-..++.|.++|+++.....+..........++++|.+..++.+... +.|..+++...... +
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence 57889987555555 44567899999998765555443333478999999977766655543 68999988765432 2
Q ss_pred e-ecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEE-eCc--cCceeEEEEeecCCCCcEEEEeeCCCcEE
Q 008717 438 I-EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRY-KGH--KRARFVIRSCFGGFEQAFIASGSEDSQNV 512 (556)
Q Consensus 438 ~-~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~-~~~--~~~~~~i~~~~~s~~~~~l~sgs~dg~v~ 512 (556)
. ..-...+.++++|++..|+.+. ..+.|..+|+... ....+ ... ...... ++. . ++.+.++-...+.|.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~~~~~~P~g--iav-~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFS--LAV-F-EDKVFWTDIINEAIF 232 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEE--EEE-E-TTEEEEEETTTTEEE
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecCCccCCcEE--EEE-E-CCEEEEEECCCCeEE
Confidence 2 2345678999999877776665 4568999998753 22333 211 122222 333 2 456666666778899
Q ss_pred EEEcCCCce
Q 008717 513 PEILLSESV 521 (556)
Q Consensus 513 iwd~~~~~~ 521 (556)
.++..+++.
T Consensus 233 ~~~~~~g~~ 241 (316)
T 1ijq_A 233 SANRLTGSD 241 (316)
T ss_dssp EEETTTCCC
T ss_pred EEeCCCCcc
Confidence 998766553
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=5.3e-06 Score=76.97 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=121.9
Q ss_pred eeEEecccCC--cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 008717 264 TLQILEAHSD--EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (556)
Q Consensus 264 ~~~~l~~h~~--~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (556)
.+.++ .|.. -...+.|+ ++.+..+.+.+|.|+++|+.++...... +... .--..+++.. ++..+....++.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEE
Confidence 44444 3443 35788887 4566677778889999999987544333 3321 1112355542 3344444568899
Q ss_pred EEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc-c----CCCeeEEEEccCCCEE
Q 008717 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-K----TLRISDMAITDDGKRI 416 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~----~~~v~~v~~s~~g~~l 416 (556)
.+||..+.+.+.++..... -+.++ +|++.|+.+..++.|.++|..+.++...... . -..++.+.|. +|..+
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp EEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 9999999999999885433 23444 5788888888889999999987554332221 1 1145677776 77655
Q ss_pred EEEeCCCeEEEEECCCCe-eeeee--------------cCCceEEEEEcCCCCEEEEEE
Q 008717 417 ISICREAAILLLDREANF-ERWIE--------------EEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 417 ~~~~~d~~I~i~d~~~~~-~~~~~--------------~~~~i~~v~~sp~~~~l~~~~ 460 (556)
+..-.++.|.+.|..+++ ...+. .....+.++++|+++.|++.+
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 555568899999999988 22221 123578999999876666555
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.53 E-value=0.00012 Score=80.88 Aligned_cols=236 Identities=6% Similarity=-0.001 Sum_probs=155.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec----CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS----GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (556)
...|.++...++|. |..|+.++-|..|+..+.. +....... -....|.++...++|+..+ |+.++-|..||..
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCC
Confidence 36799999999887 5556677778888876432 22111111 1235699999988887544 6777779999988
Q ss_pred CCcEEEEEec--------CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec----ccCCCeeEEEEccCCCE
Q 008717 348 SGECLHVYEK--------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG----QKTLRISDMAITDDGKR 415 (556)
Q Consensus 348 ~~~~~~~~~~--------~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v~~s~~g~~ 415 (556)
+++....... ....|.++...++++.+.+|+.++-|..||.+++....+.. .....|.++...++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence 7765433211 23568899888888757778887789999998877766543 12347999999988875
Q ss_pred EEEEeCCCeEEEEECCCCeeeeee--------cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC-----
Q 008717 416 IISICREAAILLLDREANFERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG----- 482 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~~~~~~--------~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~----- 482 (556)
.+. +. +-|.+||..++...... ....|.++..+++|++.+. +. +.|..||..+. +. .+..
T Consensus 466 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~-~~--~~~~~~~~~ 538 (795)
T 4a2l_A 466 WLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGL-DI--QKASILPVS 538 (795)
T ss_dssp EEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETT-EE--EECCCSCSC
T ss_pred EEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCC-eE--EEecCCCCC
Confidence 554 44 45899999887732222 2356899999999986554 44 55889998776 43 3321
Q ss_pred --ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 483 --HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 483 --~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
....+ ..+.. .++|.+.+ |+.. -|+.||..+++..
T Consensus 539 ~l~~~~i--~~i~~-d~~g~lWi-gT~~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 539 NVTKLFT--NCIYE-ASNGIIWV-GTRE-GFYCFNEKDKQIK 575 (795)
T ss_dssp GGGGSCE--EEEEE-CTTSCEEE-EESS-CEEEEETTTTEEE
T ss_pred CCCCCee--EEEEE-CCCCCEEE-EeCC-CceeECCCCCcEE
Confidence 11222 22333 67787554 4444 5888888776554
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.52 E-value=0.0004 Score=67.38 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=131.6
Q ss_pred CCcEEEEEEccCCCEEEEE-eCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEECCC
Q 008717 272 SDEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNS 348 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~ 348 (556)
...+..++|++++..|+.+ ..++.|..++...... ......+...-.....+++.+.+..|+.+ ..++.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 4567899999876655544 4568899998874100 01111222222345788888755555444 5578899999875
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeCC--CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeE
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAI 425 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I 425 (556)
......+.........++++|.+..++.+... +.|..+++++.....+........+.+++++++..|+.+. ..+.|
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 54433344344567899999976666665543 6899999987655544433334789999999877766555 55789
Q ss_pred EEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 426 LLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 426 ~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
..+|+.... ..+... ......+++. .+..+++....+.|..+|..++ +.+..+.
T Consensus 189 ~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g-~~~~~i~ 246 (316)
T 1ijq_A 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG-SDVNLLA 246 (316)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC-CCCEEEE
T ss_pred EEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC-cceEEEe
Confidence 999998654 333221 2446778885 3445555556678999997776 5555543
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=2.4e-05 Score=72.62 Aligned_cols=166 Identities=9% Similarity=0.104 Sum_probs=110.0
Q ss_pred EEEEEecCCCCC--eEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEE-EeCCCcEE
Q 008717 308 SLKHRLSGHRKP--VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSIC 384 (556)
Q Consensus 308 ~~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~ 384 (556)
+.+.++ .|... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -.. ........++++.++. .-.++.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEE
Confidence 344455 34433 4688887 4667777788889999999999988777 332 2333223334455554 44678999
Q ss_pred EEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeee---ecC---CceEEEEEcCCCCEEE
Q 008717 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI---EEE---EVITSFSLSKDNKYLL 457 (556)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~---~~~---~~i~~v~~sp~~~~l~ 457 (556)
+||.++.++........ .-..+ ++|++.|+.+..++.|.++|..+.+ ...+ ... ..++.+.|. +|+..+
T Consensus 120 V~D~~Tl~~~~ti~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 99998866554443322 22333 4678888888889999999999977 2222 222 235667777 776554
Q ss_pred EEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 458 VNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
....++.|.+.|..++ +.+..+..
T Consensus 196 nvw~s~~I~vIDp~TG-~V~~~Idl 219 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG-TVVGVIDA 219 (268)
T ss_dssp EETTCSEEEEECTTTC-BEEEEEEC
T ss_pred EECCCCeEEEEeCCCC-cEEEEEEC
Confidence 4446789999999998 88877754
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.51 E-value=4.6e-06 Score=90.11 Aligned_cols=241 Identities=13% Similarity=0.001 Sum_probs=140.7
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEEeecCCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeC-CCcEE
Q 008717 277 FLQFSH-DGKYLASSSKDQ-----------SAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQ-EEAIR 342 (556)
Q Consensus 277 ~~~~sp-~g~~las~s~dg-----------~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 342 (556)
++++.+ +|+.++.|+.+. .+.+||..++. ...+..+. .+.....++++.++++.+++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 566777 888888887543 57889988653 22223332 23344456788889999999985 45899
Q ss_pred EEECCCCcEEEEEecCCC-ceEEEEEecCCCeEEEEe-CC-----CcEEEEECCCCeEEEeeccc----CCCeeEEEEcc
Q 008717 343 RWDVNSGECLHVYEKTGV-GLISCGWFLDGGGIFAGM-TD-----KSICLWDLDGRELESWKGQK----TLRISDMAITD 411 (556)
Q Consensus 343 iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~----~~~v~~v~~s~ 411 (556)
+||..+++....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+..-....... ...-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999988765433221211 123455667999999988 44 46999999877654432100 00000112224
Q ss_pred CCCEEEEEeCC---------CeEEEEECCCCe-eeeeec----------CCceEEEEEcC-CCCEEEEEEcCC-------
Q 008717 412 DGKRIISICRE---------AAILLLDREANF-ERWIEE----------EEVITSFSLSK-DNKYLLVNLINQ------- 463 (556)
Q Consensus 412 ~g~~l~~~~~d---------~~I~i~d~~~~~-~~~~~~----------~~~i~~v~~sp-~~~~l~~~~~dg------- 463 (556)
++..++.++.+ ..+..||..+.. ...... ...-.++.+.. +++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 45555555444 457889988766 211111 11223444543 778888887543
Q ss_pred ----eEEEEEcCCCCcceeEE--eCccCceeEEEEeecCCCCcEEEEeeCC-----------CcEEEEEcCCCce
Q 008717 464 ----EIHLWSIESDPKLVSRY--KGHKRARFVIRSCFGGFEQAFIASGSED-----------SQNVPEILLSESV 521 (556)
Q Consensus 464 ----~I~lwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~sgs~d-----------g~v~iwd~~~~~~ 521 (556)
.|.+||..+. .-.... ..+..... ..++. .|++++++.|+.+ ..+.+||..+++-
T Consensus 429 ~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~-~~~~~-l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 429 TNAHIITLGEPGTS-PNTVFASNGLYFARTF-HTSVV-LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp CCEEEEECCSTTSC-CEEEECTTCCSSCCBS-CEEEE-CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CcceEEEcCCCCCC-CeeEEccCCCCCCccc-CCeEE-CCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 6888888765 322211 11121111 12233 5799999999864 4689999877653
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00017 Score=72.31 Aligned_cols=235 Identities=8% Similarity=-0.047 Sum_probs=144.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVY 355 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 355 (556)
|.+..+.+ +|+.+. ...|+.+++.... .. .... ....+..++|.+.+..|+.+. ..+.|..+++..+.....+
T Consensus 81 C~~~~~~~-~l~~~~-~~~I~~i~~~~~~-~~--~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 81 CKALGPEP-VLLFAN-RIDIRQVLPHRSE-YT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp EEECSSCC-EEEEEC-BSCEEEECTTSCC-CE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred ECCccccc-eeEeec-CccceeeccCCCc-EE--EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 44444433 444443 3567777776432 11 2222 334578999998666666554 4678999998876544444
Q ss_pred ecCCCceEEEEEecCCCeEEE-EeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-C-CeEEEEECCC
Q 008717 356 EKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E-AAILLLDREA 432 (556)
Q Consensus 356 ~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d-~~I~i~d~~~ 432 (556)
.........+++.+.+..|+. -...+.|.+.++++.....+..........++++|.+..|+.+.. . +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 433344567888876555544 445678999999876544444443347899999997776665543 3 6899999876
Q ss_pred Ce-eeee-ecCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC
Q 008717 433 NF-ERWI-EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (556)
Q Consensus 433 ~~-~~~~-~~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg 509 (556)
.. ..+. ..-...+.++|+|++..|+.+. ..+.|..+|+... .....+.........+ ++ .++.+.++-...+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~gi--av--~~~~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAI--TV--FEDSLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEE--EE--ETTEEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEE--EE--ECCEEEEeeCCCC
Confidence 55 3332 2344578999998776666654 4578999998654 3222232222222333 33 2455666666788
Q ss_pred cEEEEEcCCCcee
Q 008717 510 QNVPEILLSESVA 522 (556)
Q Consensus 510 ~v~iwd~~~~~~~ 522 (556)
.|..++..+++..
T Consensus 310 ~V~~~~~~~G~~~ 322 (386)
T 3v65_B 310 SINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEECCCCcce
Confidence 8988886555543
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.00014 Score=71.76 Aligned_cols=205 Identities=9% Similarity=0.001 Sum_probs=130.6
Q ss_pred CCcEEEEEEccCCCEEEEE-eCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeCCCcEEEEECCCC
Q 008717 272 SDEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEAIRRWDVNSG 349 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~ 349 (556)
...+..++|++.+..|..+ ...+.|..++...... . ..+.........+++.+.+..|+. -...+.|.+.+++..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~--~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E--EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e--EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 3457899999866655544 4667888888874421 1 122222234567888875555544 445678999998755
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEe-CC-CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TD-KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~ 426 (556)
.....+...-.....++++|.+..++.+. .. +.|..+++++.....+........+.++++|++..|+.+. ..+.|.
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 43333433445678999999666665554 34 7899999987655544433334689999998777666554 567899
Q ss_pred EEECCCCe-eeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 427 LLDREANF-ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 427 i~d~~~~~-~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.+|+.... ..+. ........+++. .+..+++-...+.|..+|..++ +.+..+.
T Consensus 229 ~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G-~~~~~i~ 283 (349)
T 3v64_C 229 RANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG-KNQEIIR 283 (349)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred EEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC-CccEEec
Confidence 99987654 3332 234456778883 4444555555678888886565 4444443
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=0.00015 Score=67.46 Aligned_cols=201 Identities=10% Similarity=0.091 Sum_probs=129.5
Q ss_pred EEecccCCcEEEEEEccCCCEEEE-EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 008717 266 QILEAHSDEVWFLQFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (556)
Q Consensus 266 ~~l~~h~~~V~~~~~sp~g~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (556)
+.+.+-.+.+..++|+|++..|++ ...++.|...|.. +.......+.+ ....-.+++.+++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 355667778999999998765554 6667777777776 33222222333 2567889999888877776667889999
Q ss_pred ECCCCcE---EEEEe------cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC----CeEEEee------cccCCCee
Q 008717 345 DVNSGEC---LHVYE------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELESWK------GQKTLRIS 405 (556)
Q Consensus 345 d~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~------~~~~~~v~ 405 (556)
++..... +.... ..+.....++|+|+++.|+++.......+|.+++ ..+.... ......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8865432 22222 1244568999999998888877655555555432 2222211 11223578
Q ss_pred EEEEccCCC-EEEEEeCCCeEEEEECCCCeeeeeecC----------CceEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008717 406 DMAITDDGK-RIISICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 406 ~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~~~~~~~~----------~~i~~v~~sp~~~~l~~~~~dg~I~lwd~ 470 (556)
+++++|... +++.......|.++|............ .....|+|.++|+ |++.++.+.++.+.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 999999755 455556677899999886652222221 3568999999998 444577777777653
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=6.1e-05 Score=69.23 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=120.6
Q ss_pred ceeEEecccCC--cEEEEEEccCCCEEEEEeCC--CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEE-EeC
Q 008717 263 QTLQILEAHSD--EVWFLQFSHDGKYLASSSKD--QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQ 337 (556)
Q Consensus 263 ~~~~~l~~h~~--~V~~~~~sp~g~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~ 337 (556)
+.+..+ .|.. -...+.|++ +.+..+.+.+ ..|+++|+.++.. ...+.-.. ........++++.|.. .-.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv---~~~~~l~~-~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI---LQRAEVPP-PYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE---EEEEECCT-TCCEEEEEEETTEEEEEESS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE---EEEEeCCC-CcceeEEEEeCCEEEEEEee
Confidence 344444 4543 466899986 5555565554 4899999998733 33332221 2222222223444444 456
Q ss_pred CCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-----CCCeeEEEEccC
Q 008717 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDD 412 (556)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~v~~s~~ 412 (556)
++.+.+||..+.+.+.++...... +.++ +++..++.+..++.|.++|..+.++....... -..++.+.+. +
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 889999999999999998855432 3444 57788888878889999999875443322211 1245667765 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-eeeee--------------cCCceEEEEEcCCCCEEEEEEc
Q 008717 413 GKRIISICREAAILLLDREANF-ERWIE--------------EEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~-~~~~~--------------~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
|+.++..-.+..|.+.|..+++ ...+. .....+.++++|+++.|++.+.
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6655555567899999999988 22222 1235689999998877776664
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=5.3e-05 Score=77.11 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=97.9
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-C----cEEEEECC
Q 008717 274 EVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E----AIRRWDVN 347 (556)
Q Consensus 274 ~V~~~~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g----~i~iwd~~ 347 (556)
....++++| ++..|..+...+.|+.+|..++ .. ..+.........++|++++++|+.+... + .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 467899998 4556666655578888888743 22 2223344568899999999977666552 2 2333443
Q ss_pred CCcEE--EEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeEEEee-cccCCCeeEEEEccCCCEEE-EEeCC
Q 008717 348 SGECL--HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRII-SICRE 422 (556)
Q Consensus 348 ~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~-~~~~d 422 (556)
.+... ..+.. ......++++| ++..+++-..++.|..++..+.....+. .........++|+|+|++++ +-...
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 33221 22322 23356788999 6666666557789999999877653332 22223578999999999554 44567
Q ss_pred CeEEEEECCC
Q 008717 423 AAILLLDREA 432 (556)
Q Consensus 423 ~~I~i~d~~~ 432 (556)
+.|..++...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988654
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.47 E-value=0.00033 Score=70.51 Aligned_cols=227 Identities=8% Similarity=-0.038 Sum_probs=143.2
Q ss_pred EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCC----cEEEEEecCCC
Q 008717 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSG----ECLHVYEKTGV 360 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~~~~ 360 (556)
+|+.+. ...|+..++...... .+......+..++|++.+..|+.+. ..+.|..+++... .....+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444443 457888777644221 1223456688999998776666665 4678999998652 23333333445
Q ss_pred ceEEEEEecCCCeE-EEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCe-ee
Q 008717 361 GLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ER 436 (556)
Q Consensus 361 ~v~~i~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~-~~ 436 (556)
....+++.+.+..| ++-...+.|.+.++++.....+..........++++|.+..|+.+.. .+.|...++.... ..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 67889998854444 45456788999999887665555444446899999997776666553 3689999987765 33
Q ss_pred eee-cCCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCc--cCceeEEEEeecCCCCcEEEEeeCCCcEE
Q 008717 437 WIE-EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGH--KRARFVIRSCFGGFEQAFIASGSEDSQNV 512 (556)
Q Consensus 437 ~~~-~~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~sgs~dg~v~ 512 (556)
+.. .-...+.+++++++..|+.+. ..+.|..+|+... ......... ...... +.. ..+.++++-...+.|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~g--l~v--~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFS--LAV--FEDKVFWTDIINEAIF 314 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEE--EEE--ETTEEEEEESSSCSEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEE--EEE--eCCEEEEecCCCCeEE
Confidence 322 335789999999887777765 4578999998654 332222221 122223 333 1455666666778899
Q ss_pred EEEcCCCcee
Q 008717 513 PEILLSESVA 522 (556)
Q Consensus 513 iwd~~~~~~~ 522 (556)
.++..+++..
T Consensus 315 ~~~~~~G~~~ 324 (400)
T 3p5b_L 315 SANRLTGSDV 324 (400)
T ss_dssp EEESSSCCCC
T ss_pred EEEcCCCCce
Confidence 9987666543
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.47 E-value=2.1e-05 Score=83.28 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=144.1
Q ss_pred EEEccCCCE----EEEEeCCCcEEEEEeecCCeeEEEEEecCCC--CCeEE-EEeCCCCCEEEEEe------CCCcEEEE
Q 008717 278 LQFSHDGKY----LASSSKDQSAIIWEVKEDGQVSLKHRLSGHR--KPVFT-VSWSPNDHQLLTCG------QEEAIRRW 344 (556)
Q Consensus 278 ~~~sp~g~~----las~s~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~l~s~~------~dg~i~iw 344 (556)
++++|.+.. |+.++.|+.+..+|..++... -......+. ..+.+ .... ++ .+++++ .+|.|+.+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~-W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETV-WKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE-EeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEE
Confidence 445444444 788888999999999876432 112221110 01111 0111 34 555554 37999999
Q ss_pred ECCCCcEEEEEecCCCc-------------------------------------e-EEEEEecCCCeEEEEeCCC-----
Q 008717 345 DVNSGECLHVYEKTGVG-------------------------------------L-ISCGWFLDGGGIFAGMTDK----- 381 (556)
Q Consensus 345 d~~~~~~~~~~~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~dg----- 381 (556)
|..+|+.+-.+...... + ..+++.++...++.++.++
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988777643211 0 1345667777888877653
Q ss_pred -----------cEEEEECCCCeEEEeecccCC---------CeeEEEEc-cCC---CEEEEEeCCCeEEEEECCCCeeee
Q 008717 382 -----------SICLWDLDGRELESWKGQKTL---------RISDMAIT-DDG---KRIISICREAAILLLDREANFERW 437 (556)
Q Consensus 382 -----------~i~vwd~~~~~~~~~~~~~~~---------~v~~v~~s-~~g---~~l~~~~~d~~I~i~d~~~~~~~~ 437 (556)
.|..+|.+++++.-....... ...-+... .+| ..++.++.+|.++++|..+++...
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 799999988766432221110 11112222 467 467778899999999999988211
Q ss_pred e-ec-------------C-Cce--------------------------EEEEEcCCCCEEEEEE----------------
Q 008717 438 I-EE-------------E-EVI--------------------------TSFSLSKDNKYLLVNL---------------- 460 (556)
Q Consensus 438 ~-~~-------------~-~~i--------------------------~~v~~sp~~~~l~~~~---------------- 460 (556)
. .. . .++ ..++++|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 1 10 0 111 2467788777665542
Q ss_pred -----------------------cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 461 -----------------------INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 461 -----------------------~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
.+|.|..||+.++ +.+-+..... +... ... ...+.+|+.++.||.++.||..
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~~~-~~~~--g~~-~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKMERF-AVWG--GTM-ATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEESS-CCCS--BCE-EETTTEEEEECTTSEEEEEETT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecCCC-CccC--cce-EecCCEEEEECCCCeEEEEECC
Confidence 2367888998888 6666553211 1110 101 2256678889999999999999
Q ss_pred CCceeeeec
Q 008717 518 SESVAAAAS 526 (556)
Q Consensus 518 ~~~~~~~~~ 526 (556)
+++++-...
T Consensus 503 tG~~lW~~~ 511 (599)
T 1w6s_A 503 TGDLLWKFK 511 (599)
T ss_dssp TCCEEEEEE
T ss_pred CCCEEEEee
Confidence 999876554
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00053 Score=68.96 Aligned_cols=212 Identities=10% Similarity=-0.013 Sum_probs=135.8
Q ss_pred ccCCcEEEEEEccCCCEEEEE-eCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEEC
Q 008717 270 AHSDEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDV 346 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~ 346 (556)
.....+..++|++.+..|..+ ...+.|+.+++..... ......+.........+++.+.+..|+.+ ...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999866655554 4567888888764210 01112233334567788888755555444 45678999998
Q ss_pred CCCcEEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCC
Q 008717 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REA 423 (556)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~ 423 (556)
+.......+.........+++.|.+..|+.+.. .+.|...++++.....+....-...+.+++++++..|+.+. ..+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 766554445444455789999997666666653 37899999987655555443334789999998887776664 467
Q ss_pred eEEEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCc
Q 008717 424 AILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (556)
Q Consensus 424 ~I~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~ 483 (556)
.|..+|+.... ..+... ......+++. .+..+++....+.|..+|..++ +.+..+...
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G-~~~~~i~~~ 330 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG-SDVNLLAEN 330 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC-CCCEEEECS
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC-CceEEEecC
Confidence 89999987665 333321 2345677773 3344445555678988997777 555555433
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.46 E-value=0.00023 Score=78.58 Aligned_cols=235 Identities=8% Similarity=-0.012 Sum_probs=150.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe------cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL------SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (556)
...|.++...++|. |..|+.++-|..|+..++. +.....- .-....|.++...++++.|..|+.++-|.+||
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 45699999998887 4456777778999876542 2111100 01235789999988888566677777799999
Q ss_pred CCCCcEEEEEe----cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc------cCCCeeEEEEccCCCE
Q 008717 346 VNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ------KTLRISDMAITDDGKR 415 (556)
Q Consensus 346 ~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~v~~s~~g~~ 415 (556)
..+++...... .....|.++...++|...+ |+. +-+.+||..++........ ....|.++..+++|..
T Consensus 434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 98877543321 1245688888887776544 445 4588999988776655422 2247899999999886
Q ss_pred EEEEeCCCeEEEEECCCCeeeee-------ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc----
Q 008717 416 IISICREAAILLLDREANFERWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK---- 484 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~~~~~-------~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~---- 484 (556)
.+.. . +-|..||..+....+. .....|.++..+++|.+.+ ++.. .|..||..+. ....+....
T Consensus 512 Wigt-~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~~--~~~~~~~~~gl~~ 585 (795)
T 4a2l_A 512 WIGG-E-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV-GTRE-GFYCFNEKDK--QIKRYNTTNGLPN 585 (795)
T ss_dssp EEEE-S-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE-EESS-CEEEEETTTT--EEEEECGGGTCSC
T ss_pred EEEe-C-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCC-CceeECCCCC--cEEEeCCCCCCch
Confidence 5544 4 5688899877654111 1234688999999998554 4434 5888998765 334443221
Q ss_pred CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 485 RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
..+. .+.. .++|.+.+++ . +-|..|+..+++.
T Consensus 586 ~~i~--~i~~-d~~g~lWi~t-~-~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 586 NVVY--GILE-DSFGRLWLST-N-RGISCFNPETEKF 617 (795)
T ss_dssp SCEE--EEEE-CTTSCEEEEE-T-TEEEEEETTTTEE
T ss_pred hheE--EEEE-CCCCCEEEEc-C-CceEEEcCCCCcE
Confidence 2222 2334 6677765544 4 4577788776654
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=4.8e-05 Score=80.55 Aligned_cols=240 Identities=14% Similarity=0.082 Sum_probs=142.0
Q ss_pred CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCC--CeE-E-EEeC--CCCC-EEEEEe------CCCcEEEEECCCCc
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK--PVF-T-VSWS--PNDH-QLLTCG------QEEAIRRWDVNSGE 350 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~-~-l~~s--~~~~-~l~s~~------~dg~i~iwd~~~~~ 350 (556)
+..++.++.|+.|..+|..++... -......+.. .+. . +... .+++ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~-W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVV-WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEE-EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE-eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 456778888999999999877432 1122221110 111 0 1111 1233 566654 37899999999999
Q ss_pred EEEEEecCCCce-----------------------------------------EEEEEecCCCeEEEEeC----------
Q 008717 351 CLHVYEKTGVGL-----------------------------------------ISCGWFLDGGGIFAGMT---------- 379 (556)
Q Consensus 351 ~~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~l~~~~~---------- 379 (556)
.+-........+ ..+++.|+...++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 877654321000 12456677777777663
Q ss_pred ----------C----CcEEEEECCCCeEEEeec--ccCC----CeeE-EEEc---cCCC---EEEEEeCCCeEEEEECCC
Q 008717 380 ----------D----KSICLWDLDGRELESWKG--QKTL----RISD-MAIT---DDGK---RIISICREAAILLLDREA 432 (556)
Q Consensus 380 ----------d----g~i~vwd~~~~~~~~~~~--~~~~----~v~~-v~~s---~~g~---~l~~~~~d~~I~i~d~~~ 432 (556)
| +.|..+|.++++..-... ++.. .+.. +.+. .+|+ .++.++.+|.++++|..+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 579999998776643322 1210 1111 2222 4674 678899999999999998
Q ss_pred Ceeee-eecC--------------Cc--------------------------------eEEEEEcCCCCEEEEEEc----
Q 008717 433 NFERW-IEEE--------------EV--------------------------------ITSFSLSKDNKYLLVNLI---- 461 (556)
Q Consensus 433 ~~~~~-~~~~--------------~~--------------------------------i~~v~~sp~~~~l~~~~~---- 461 (556)
++... .... .+ -..++++|+...+++...
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 87211 1100 00 013567776655555432
Q ss_pred -----------------------------CCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEE
Q 008717 462 -----------------------------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNV 512 (556)
Q Consensus 462 -----------------------------dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~ 512 (556)
+|.|..||+.++ +.+.+....... .. ... ...+.+++.|+.||.++
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~-~~--g~~-~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPL-WA--GVL-ATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCC-CS--CCE-EETTTEEEEECTTSEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCC-cc--cce-EeCCCEEEEECCCCcEE
Confidence 578999999998 666665433211 11 111 12466788899999999
Q ss_pred EEEcCCCceeeeecCCC
Q 008717 513 PEILLSESVAAAASSLD 529 (556)
Q Consensus 513 iwd~~~~~~~~~~~~~~ 529 (556)
.||..+++++.......
T Consensus 511 A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGS 527 (582)
T ss_dssp EEETTTCCEEEEEECSS
T ss_pred EEECCCCCEEEEecCCC
Confidence 99999999876655433
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.45 E-value=7.4e-05 Score=68.67 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=109.3
Q ss_pred EEEEEecCCCC--CeEEEEeCCCCCEEEEEeCCC--cEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEE-EeCCCc
Q 008717 308 SLKHRLSGHRK--PVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKS 382 (556)
Q Consensus 308 ~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~ 382 (556)
+.+..+ .|+. -...+.|++ +..+.+.+.+| .|+.+|+.+|+.+..+..... .......++++.++. .-.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCE
Confidence 445555 3543 356899986 56666666654 899999999999888864432 222222333455554 446889
Q ss_pred EEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eeeee---cC---CceEEEEEcCCCCE
Q 008717 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EE---EVITSFSLSKDNKY 455 (556)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~---~~---~~i~~v~~sp~~~~ 455 (556)
+.+||.++.++........ .-. .+++++..|+.+..++.|.++|..+.+ ...+. +. ..++.+.+. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-Cce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999998866554443332 223 344677777777788999999999877 22221 11 345666766 6665
Q ss_pred EEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 456 LLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 456 l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.+....+..|.+.|..++ +.+..+.
T Consensus 163 yanvw~s~~I~vIDp~tG-~V~~~id 187 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG-KVVAWID 187 (243)
T ss_dssp EEEETTTTEEEEECTTTC-BEEEEEE
T ss_pred EEEECCCCeEEEEECCCC-CEEEEEE
Confidence 544446789999999999 8887775
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.41 E-value=0.00023 Score=71.26 Aligned_cols=206 Identities=9% Similarity=0.017 Sum_probs=131.3
Q ss_pred cCCcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEECCC
Q 008717 271 HSDEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNS 348 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~ 348 (556)
....+..++|.+.+..|+ +-...+.|..++..... ....+.........+++.+.+..|+.+ ...+.|.+.+++.
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 344578999998655555 44466788888887432 112222222345678888765555544 4467888888865
Q ss_pred CcEEEEEecCCCceEEEEEecCCCeEEEEeC-C-CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeE
Q 008717 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMT-D-KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAI 425 (556)
Q Consensus 349 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I 425 (556)
......+...-.....+++.|.+..++.+.. . +.|..+++++.....+........+.++++|++..|+.+. ..+.|
T Consensus 191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I 270 (386)
T 3v65_B 191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence 5433344434456789999997766666553 3 6899999987655554433333689999998777665554 56789
Q ss_pred EEEECCCCe-eeee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 426 LLLDREANF-ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 426 ~i~d~~~~~-~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
..+|+.... ..+. ........+++. .+..+++....+.|..+|..++ +.+..+.
T Consensus 271 ~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G-~~~~~i~ 326 (386)
T 3v65_B 271 ERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG-KNQEIIR 326 (386)
T ss_dssp EEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred EEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCC-cceEEEc
Confidence 999987654 3332 234456778883 4445555556778888886666 5555554
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.38 E-value=0.00017 Score=73.30 Aligned_cols=192 Identities=10% Similarity=0.060 Sum_probs=115.6
Q ss_pred CcEEEEEEccC--CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC----c-EEEEE
Q 008717 273 DEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE----A-IRRWD 345 (556)
Q Consensus 273 ~~V~~~~~sp~--g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg----~-i~iwd 345 (556)
.....++|+|+ +..|..+...+.|+.++..++ . . ..+.........++|+++|+ |+.+...+ . +...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~--v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-Y--V-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-E--E-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC-E--E-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 34678999985 444555544488999988644 2 2 23333445688999999999 44444321 1 33333
Q ss_pred CCCCcE-EEEEecCCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE-EEeec-ccCCCeeEEEEccCCCEEEEE-e
Q 008717 346 VNSGEC-LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL-ESWKG-QKTLRISDMAITDDGKRIISI-C 420 (556)
Q Consensus 346 ~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-~~~~~v~~v~~s~~g~~l~~~-~ 420 (556)
...+.. ...+. .......++++| ++..+++-..++.|+.+|..++.+ ..+.. ........++|+|+|++|+.+ .
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 222211 11222 223346688999 666555555678899999985554 33222 222234579999999955544 4
Q ss_pred CCCeEEEEECCC--Ce----eeeeec---------------CCceEEEEE---------cCCCCEEEEEEcCCeEEEEEc
Q 008717 421 REAAILLLDREA--NF----ERWIEE---------------EEVITSFSL---------SKDNKYLLVNLINQEIHLWSI 470 (556)
Q Consensus 421 ~d~~I~i~d~~~--~~----~~~~~~---------------~~~i~~v~~---------sp~~~~l~~~~~dg~I~lwd~ 470 (556)
..+.|+.+|... +. ..+.+. -.....+++ .++|.++++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 567899988653 21 122221 123667899 777777766666788999984
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=2.1e-05 Score=86.23 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=114.2
Q ss_pred CeEEEEeC-CCCCEEEEEeC-CC----cEEEEECCCC-cEEE-EEecCCCceEEEEEecCCCeEEEEeCC-----CcEEE
Q 008717 319 PVFTVSWS-PNDHQLLTCGQ-EE----AIRRWDVNSG-ECLH-VYEKTGVGLISCGWFLDGGGIFAGMTD-----KSICL 385 (556)
Q Consensus 319 ~v~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~v 385 (556)
.+....|| |||++|+.+.. +| .|+++|+.++ +.+. .+. .....++|+|||+.|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 33 4999999998 6321 111 113467899999988877654 26888
Q ss_pred EECCCCe---EEEeecccCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCe--e--eee-e-cCCceEEEEEcCCC
Q 008717 386 WDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANF--E--RWI-E-EEEVITSFSLSKDN 453 (556)
Q Consensus 386 wd~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---d~~I~i~d~~~~~--~--~~~-~-~~~~i~~v~~sp~~ 453 (556)
+++.+.. ...+..........+.|+|||++|+..+. ...|.++|+.++. . ... . ......++.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 8887642 22222222225678899999998887653 3468999998753 2 222 2 234445555544 5
Q ss_pred CEEEEEE-cC----CeEEEEEcCCCCcceeE-EeCccCceeEEEEeecCCCCcEEEEeeCCCc--EEEEEc
Q 008717 454 KYLLVNL-IN----QEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQ--NVPEIL 516 (556)
Q Consensus 454 ~~l~~~~-~d----g~I~lwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~--v~iwd~ 516 (556)
..|+..+ .+ ..|..+|+.+. ..... +..+...+..-.+.+ . .+.++++...++. |+++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~-~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAV-R-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEE-C-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEE-E-CCEEEEEEEeCCEEEEEEEec
Confidence 5554443 33 25777777642 22233 334444333323333 2 3456677777886 455564
No 273
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.35 E-value=6.7e-05 Score=80.97 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=110.7
Q ss_pred EEEeCCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEEecC--C-------CceEEEEEecCCC-
Q 008717 322 TVSWSPNDHQLLTCGQEE-------------------AIRRWDVNSGECLHVYEKT--G-------VGLISCGWFLDGG- 372 (556)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~--~-------~~v~~i~~~~~~~- 372 (556)
.+++.|+...++.++.++ .|..+|..+|+.+-.++.. . .+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 467888888888887765 3999999999998887742 1 2333333344665
Q ss_pred --eEEEEeCCCcEEEEECCCCeEEEeecc-c-----------CCC------------------------eeEEEEccCCC
Q 008717 373 --GIFAGMTDKSICLWDLDGRELESWKGQ-K-----------TLR------------------------ISDMAITDDGK 414 (556)
Q Consensus 373 --~l~~~~~dg~i~vwd~~~~~~~~~~~~-~-----------~~~------------------------v~~v~~s~~g~ 414 (556)
.++.++.+|.++++|.+++++...... . ..+ -..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 688899999999999987665411100 0 000 11267888777
Q ss_pred EEEEEe------------------------------------CCCeEEEEECCCCee-eeeecCCceEEEEEcCCCCEEE
Q 008717 415 RIISIC------------------------------------REAAILLLDREANFE-RWIEEEEVITSFSLSKDNKYLL 457 (556)
Q Consensus 415 ~l~~~~------------------------------------~d~~I~i~d~~~~~~-~~~~~~~~i~~v~~sp~~~~l~ 457 (556)
.+++.. .+|.|..||+.+++. -......+.....+...+.+++
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence 655421 237899999999983 2233334444445555788899
Q ss_pred EEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 458 VNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
+++.|+.++.||.+++ +.+..+....
T Consensus 474 ~g~~dg~l~a~d~~tG-~~l~~~~~~~ 499 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKG-EALWQFEAQS 499 (668)
T ss_dssp EECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred EECCcccchhhhhhcC-hhheEecCCC
Confidence 9999999999999999 8888876553
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00033 Score=65.23 Aligned_cols=202 Identities=11% Similarity=0.119 Sum_probs=130.1
Q ss_pred EEecCCCCCeEEEEeCCCCCEEEE-EeCCCcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEeCCCcEEEEEC
Q 008717 311 HRLSGHRKPVFTVSWSPNDHQLLT-CGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (556)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~ 388 (556)
+.+.+-.+.+..++|+|+++.|++ ...++.|...|.. ++.++.+.-. ......+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 456677778999999998765554 6678889999987 8888877532 356788999988876666667788999987
Q ss_pred CCCe----EEEee-----cccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC----Ceeeee--------ecCCceEEE
Q 008717 389 DGRE----LESWK-----GQKTLRISDMAITDDGKRIISICREAAILLLDREA----NFERWI--------EEEEVITSF 447 (556)
Q Consensus 389 ~~~~----~~~~~-----~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~----~~~~~~--------~~~~~i~~v 447 (556)
.... +.... .........++|+|+++.|+++.......+|.+.. ...... .....+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 5322 12221 11223568999999998877777665555555432 111111 123357899
Q ss_pred EEcCCC-CEEEEEEcCCeEEEEEcCCCCcceeEEeCccC-------ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 448 SLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-------ARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 448 ~~sp~~-~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
+++|.. ++++.......|..+|... +.+..+.-..+ ....-.+++ .++|+ |+..++.+.++.+.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~-d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAM-DASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEE-CTTCC-EEEEETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEE-CCCCC-EEEEcCCceEEEEEec
Confidence 999965 4555555667888899664 44444432211 001123556 88997 5556888877777543
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.29 E-value=0.00089 Score=64.54 Aligned_cols=202 Identities=10% Similarity=0.043 Sum_probs=124.8
Q ss_pred EEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCCC--cEEE
Q 008717 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--SICL 385 (556)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg--~i~v 385 (556)
+....+... .....++|+++++.+++-..++.|..||... +....+. ....+..+++.++|+.+++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344445432 4577899999998777766788999999865 3333333 345688999999998666554332 4777
Q ss_pred EECCCCeEEEeecc-cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eee-e----------ecCCceEEEEEcCC
Q 008717 386 WDLDGRELESWKGQ-KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW-I----------EEEEVITSFSLSKD 452 (556)
Q Consensus 386 wd~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~-~----------~~~~~i~~v~~sp~ 452 (556)
+|..++.+..+... .......++..+++..+++-..++.|.++|..++. ... . ..-...+.+ +|+
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 78776665444322 12234556666655545554468899999987653 111 0 111234555 888
Q ss_pred CCEEEEEE-cCCeEEEEEcCCCCcc--eeEEe--CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 453 NKYLLVNL-INQEIHLWSIESDPKL--VSRYK--GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 453 ~~~l~~~~-~dg~I~lwd~~~~~~~--~~~~~--~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+++|+++. ..+.|..|++...... ...+. ..... +++ .++|++.++....+.|.+++.. +++
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~g-----i~v-d~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDD-----FAF-DVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSS-----EEE-BTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCC-----eEE-CCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 87766655 4678999998742121 12221 11222 334 7889887777778899999875 444
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00043 Score=76.30 Aligned_cols=241 Identities=7% Similarity=0.018 Sum_probs=150.3
Q ss_pred cCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe-------cCCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 008717 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-------SGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (556)
....|.++...++|. |..|+.++-|..|+..+.. +...... .-....|.++...++|... .|+.++-|..
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~ 387 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINV 387 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEE
Confidence 346799999998886 5556667778888876432 2111100 1123568999988877654 4565566888
Q ss_pred EECCCCcEEEEE---ecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec--ccCCCeeEEEEccCCCEEEE
Q 008717 344 WDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 344 wd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~ 418 (556)
||..++...... ......|.++...+++. |.+|+.++-|..+|.+++....+.. .....|.++...++|... .
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-i 465 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-I 465 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-E
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-E
Confidence 998655432211 12346688888776665 5557776779999988777766543 223479999988887644 4
Q ss_pred EeCCCeEEEEECCCCe-eeeee-c-----CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC--ceeE
Q 008717 419 ICREAAILLLDREANF-ERWIE-E-----EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFV 489 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~-~~~~~-~-----~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~--~~~~ 489 (556)
|+. +-|..||..++. ..+.. . ...|.++...++|.+. +|+.++-|..||..++ .+..+..... ...+
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i 541 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTI 541 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCC--EEEEECTTTTCSCSCE
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCC--eEEEccCCCCCCCCee
Confidence 455 569999988876 22221 1 3578999999988755 4555445888987765 3444432111 1112
Q ss_pred EEEeecCCCCcEEEEeeCCCcEEEEEcCCCcee
Q 008717 490 IRSCFGGFEQAFIASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~ 522 (556)
..+.. .++|.+.+ |+.+|.|..||..+++..
T Consensus 542 ~~i~~-d~~g~lWi-~T~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 542 NQIYR-SSKGQMWL-ATGEGLVCFPSARNFDYQ 572 (781)
T ss_dssp EEEEE-CTTSCEEE-EETTEEEEESCTTTCCCE
T ss_pred EEEEE-CCCCCEEE-EECCCceEEECCCCCcEE
Confidence 22333 66777544 455666588888776543
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0019 Score=62.55 Aligned_cols=221 Identities=12% Similarity=0.006 Sum_probs=136.1
Q ss_pred CCcEEEEEeecCC-eeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcE-EEEEecCCCceEEEEEec
Q 008717 293 DQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGEC-LHVYEKTGVGLISCGWFL 369 (556)
Q Consensus 293 dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~ 369 (556)
...|+.+++.... .... .+. ....+..++|.+.+..|+.+. ..+.|..++...+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~--~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATI--VVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEE--EEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEE--Eec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 4578888887542 1111 111 113467899998666665554 467899999876532 122222233456788887
Q ss_pred CCCeE-EEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCe-eeee-ecCCce
Q 008717 370 DGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ERWI-EEEEVI 444 (556)
Q Consensus 370 ~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~-~~~~-~~~~~i 444 (556)
.+..| ++-...+.|.++++++.....+..........++++|.+..|+.+.. .+.|..+++.... ..+. ..-...
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 55555 44456678999999876554444333347899999997666666553 5789999887654 3332 233567
Q ss_pred EEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 445 TSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.++++|++..|+.+. ..+.|..+|+... .......+....... ++. . .+.++++-...+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~g--lav-~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFA--LTL-F-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEE--EEE-E-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceE--EEE-e-CCEEEEEecCCCeEEEEECCCCCc
Confidence 8999999777666665 4678999998653 222222222222223 333 2 345556666678899999876654
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.00062 Score=66.06 Aligned_cols=205 Identities=7% Similarity=-0.050 Sum_probs=130.6
Q ss_pred CcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEE-EEeCCCcEEEEECCCCc
Q 008717 273 DEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 273 ~~V~~~~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~ 350 (556)
..+..++|.+.+..| .+-...+.|..++......... .+...-.....+++.+.+..|+ +-...+.|.+++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 356789999865544 4545677888888875421111 1112223456788887555554 44456789999987544
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i 427 (556)
....+.........+++.|.+..++.+.. .+.|...++++.....+....-...+.+++++++..|+.+. ..+.|..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 33333344456789999997666666653 57899999987554444333333689999999777666554 5678999
Q ss_pred EECCCCe-eeeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 428 LDREANF-ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 428 ~d~~~~~-~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
+|+.... ..+.. .......+++.. +..+.+-...+.|..+|..++ +....+.
T Consensus 193 ~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G-~~~~~i~ 246 (318)
T 3sov_A 193 SNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG-EGLREIH 246 (318)
T ss_dssp EETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred EcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC-CceEEEe
Confidence 9987654 33332 345567788753 344445555678999998777 5555543
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.22 E-value=0.00012 Score=77.28 Aligned_cols=160 Identities=9% Similarity=-0.004 Sum_probs=103.6
Q ss_pred EEeCCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEEecCC----------CceEEEEEecCCC---e
Q 008717 323 VSWSPNDHQLLTCGQE----------------EAIRRWDVNSGECLHVYEKTG----------VGLISCGWFLDGG---G 373 (556)
Q Consensus 323 l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~---~ 373 (556)
+++.++...++.+..+ +.|..+|..+|+.+-.++... .++ -+...++|+ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence 4556666666666532 359999999999988776321 222 122234674 5
Q ss_pred EEEEeCCCcEEEEECCCCeEEEee-ccc------------CCCe--------------------------eEEEEccCCC
Q 008717 374 IFAGMTDKSICLWDLDGRELESWK-GQK------------TLRI--------------------------SDMAITDDGK 414 (556)
Q Consensus 374 l~~~~~dg~i~vwd~~~~~~~~~~-~~~------------~~~v--------------------------~~v~~s~~g~ 414 (556)
++.++.+|.++++|.+++++.... ... ..++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 777889999999999876553222 111 0011 2467888877
Q ss_pred EEEEEe-------------------------------------CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEE
Q 008717 415 RIISIC-------------------------------------REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYL 456 (556)
Q Consensus 415 ~l~~~~-------------------------------------~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l 456 (556)
.+++.+ .++.|..||..+++ .-.......+.+..+...+..+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 478 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV 478 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence 776653 34789999999988 2222333333333333356678
Q ss_pred EEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 457 LVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 457 ~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
++++.|+.|+.||.+++ +.+.++....
T Consensus 479 ~~g~~dg~l~a~D~~tG-~~lw~~~~~~ 505 (571)
T 2ad6_A 479 WYATLDGYLKALDNKDG-KELWNFKMPS 505 (571)
T ss_dssp EEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred EEEcCCCeEEEEECCCC-CEEEEEeCCC
Confidence 88999999999999999 8888876543
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00037 Score=76.79 Aligned_cols=236 Identities=9% Similarity=-0.017 Sum_probs=146.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEE-EecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH-RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
...|.++...++|. |..|+.++-|..|+..++ ...... .-......|.++...+++...+ |+.++-+..+|..+++
T Consensus 362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK 438 (781)
T ss_dssp SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE-EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE
T ss_pred CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc
Confidence 35699999988887 445565666888887532 111110 0012346789999888776555 5666678899988776
Q ss_pred EEEEEe--cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-----CCCeeEEEEccCCCEEEEEeCCC
Q 008717 351 CLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDDGKRIISICREA 423 (556)
Q Consensus 351 ~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~d~ 423 (556)
...... .....|.++...+++. +..|+. +-|..||..++......... ...|.++...++|...+ |+.++
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~ 515 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGG 515 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCC
Confidence 433221 1345788888877665 555666 56889998876554443222 24799999999887554 45544
Q ss_pred eEEEEECCCCeeeeee-----cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc----CceeEEEEee
Q 008717 424 AILLLDREANFERWIE-----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----RARFVIRSCF 494 (556)
Q Consensus 424 ~I~i~d~~~~~~~~~~-----~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~----~~~~~i~~~~ 494 (556)
-|..||..+.+..... ....|.++..+++|.+.+ ++.+|.|..||..++ + ...+.... ..+.. ++.
T Consensus 516 Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~-~-~~~~~~~~gl~~~~i~~--i~~ 590 (781)
T 3v9f_A 516 GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNF-D-YQVFQRKEGLPNTHIRA--ISE 590 (781)
T ss_dssp CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTC-C-CEEECGGGTCSCCCCCE--EEE
T ss_pred CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECCCCC-c-EEEccccCCCCCceEEE--EEE
Confidence 5888998877632222 235688999999987554 444665488988765 3 44443222 12222 333
Q ss_pred cCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 495 GGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 495 ~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.++|.+.+ ++.+| |..++..++..
T Consensus 591 -d~~g~lW~-~t~~G-l~~~~~~~~~~ 614 (781)
T 3v9f_A 591 -DKNGNIWA-STNTG-ISCYITSKKCF 614 (781)
T ss_dssp -CSSSCEEE-ECSSC-EEEEETTTTEE
T ss_pred -CCCCCEEE-EcCCc-eEEEECCCCce
Confidence 66776554 45555 66777766544
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00043 Score=70.74 Aligned_cols=204 Identities=10% Similarity=0.104 Sum_probs=117.0
Q ss_pred cEEEEEEcc-CCCEEEEE-eCCCcEEEEEeecCCeeEEEEEec-CCCCCeEEEEe-------CCCCCEEEEEeCCC----
Q 008717 274 EVWFLQFSH-DGKYLASS-SKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSW-------SPNDHQLLTCGQEE---- 339 (556)
Q Consensus 274 ~V~~~~~sp-~g~~las~-s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~-------s~~~~~l~s~~~dg---- 339 (556)
....|+|+| ++..|+.+ ...+.|++.|..++ .+..+.... ........++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 467899998 34444444 33456777777643 222222111 12235889999 99999777776654
Q ss_pred ---cEEEEECCC-CcEE-----EEEecCCCceEEEEEecCCCe-EEEEeCCCcEEEEECC-------CCeE---------
Q 008717 340 ---AIRRWDVNS-GECL-----HVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWDLD-------GREL--------- 393 (556)
Q Consensus 340 ---~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~vwd~~-------~~~~--------- 393 (556)
.|.+.+... +... ..+.... ....++.+|++.. +++-..++.|..+|+. ++.+
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665433 2221 2222112 3356788995545 4555577789999987 4433
Q ss_pred ---EE-eecccCCCeeEEEEccCCCEEE-EEeCCCeEEEEECCC--Ce----eeeeec---C------------CceE-E
Q 008717 394 ---ES-WKGQKTLRISDMAITDDGKRII-SICREAAILLLDREA--NF----ERWIEE---E------------EVIT-S 446 (556)
Q Consensus 394 ---~~-~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~I~i~d~~~--~~----~~~~~~---~------------~~i~-~ 446 (556)
.. .........+.++|+|+|+.|+ +-+..+.|+.+|... +. ..+.+. . .... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 12 2222233578999999999644 445667899866533 22 122221 0 1234 4
Q ss_pred EEEc-------CCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 447 FSLS-------KDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 447 v~~s-------p~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
++.. ++|.++++-..++.|+.++ .++ .+.++.+
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G--~v~TiaG 417 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG--IVSTYAG 417 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC--BEEEEEE
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCC--CEEEEec
Confidence 5554 4566666666678899998 444 3555543
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=2.2e-05 Score=84.79 Aligned_cols=230 Identities=8% Similarity=-0.009 Sum_probs=129.7
Q ss_pred cEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CC-----CcEEEEEC
Q 008717 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QE-----EAIRRWDV 346 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d-----g~i~iwd~ 346 (556)
...++++.++|++++.|+ .+..+.+||..++ .......+..... -.+++..++++.++.|+ .+ ..+.+||.
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 344577889999999988 4568999999864 3332222222111 23455667899999988 34 46999999
Q ss_pred CCCcEEEEE----ecCCCceEEEEEecCCCeEEEEeCCC---------cEEEEECCCCeEEEeecccC---------CCe
Q 008717 347 NSGECLHVY----EKTGVGLISCGWFLDGGGIFAGMTDK---------SICLWDLDGRELESWKGQKT---------LRI 404 (556)
Q Consensus 347 ~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg---------~i~vwd~~~~~~~~~~~~~~---------~~v 404 (556)
.+++....- ......-....+..++..++.|+.+| .+..||..+..-........ ..-
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 887644320 00000000011223455555555443 56788887644222111110 022
Q ss_pred eEEEEc-cCCCEEEEEeCCC-----------eEEEEECCCCe-eeee----ecCCceEEEEEcCCCCEEEEEEcC-----
Q 008717 405 SDMAIT-DDGKRIISICREA-----------AILLLDREANF-ERWI----EEEEVITSFSLSKDNKYLLVNLIN----- 462 (556)
Q Consensus 405 ~~v~~s-~~g~~l~~~~~d~-----------~I~i~d~~~~~-~~~~----~~~~~i~~v~~sp~~~~l~~~~~d----- 462 (556)
.++.|. .+++.+++|+.++ .|.+||..+.. .... .....-.+++..|+++.+++|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 344443 3677778877532 68889988876 3222 112223455777899999999864
Q ss_pred ------CeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeC
Q 008717 463 ------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (556)
Q Consensus 463 ------g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~ 507 (556)
..+.+||..+. + -..+...........++...++|++++.|+.
T Consensus 482 ~~~~~~~~v~~ydp~t~-~-W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQD-T-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGT-E-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEcCCCC-c-eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 46899998765 2 1222211111111112222689999999885
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.00089 Score=64.75 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=127.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecC----CC---eEEEEeC---CCcEEEEEC--CCCeEEEe
Q 008717 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD----GG---GIFAGMT---DKSICLWDL--DGRELESW 396 (556)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~~---dg~i~vwd~--~~~~~~~~ 396 (556)
...++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ .+++... +++|.+|++ .++.+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 456777777889999999 8998888754 55777776663 22 2334443 578999977 45555555
Q ss_pred ec------ccCCCeeEEEE--ccC-CC-EEEEEeCCCeEEEEECCC---C----e-eeeeecCCceEEEEEcCCCCEEEE
Q 008717 397 KG------QKTLRISDMAI--TDD-GK-RIISICREAAILLLDREA---N----F-ERWIEEEEVITSFSLSKDNKYLLV 458 (556)
Q Consensus 397 ~~------~~~~~v~~v~~--s~~-g~-~l~~~~~d~~I~i~d~~~---~----~-~~~~~~~~~i~~v~~sp~~~~l~~ 458 (556)
.. .....+..+++ +|. +. ++++...+|.+..|++.. + + .+.+...+.+..+...+....|++
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 22 11136778888 674 44 677888899999999843 2 2 444556778899999999999999
Q ss_pred EEcCCeEEEEEcCCC----CcceeEEe-Cc-cCceeEEEEeecCCCCc-EEEEee-CCCcEEEEEcC-CCceeeee
Q 008717 459 NLINQEIHLWSIESD----PKLVSRYK-GH-KRARFVIRSCFGGFEQA-FIASGS-EDSQNVPEILL-SESVAAAA 525 (556)
Q Consensus 459 ~~~dg~I~lwd~~~~----~~~~~~~~-~~-~~~~~~i~~~~~s~~~~-~l~sgs-~dg~v~iwd~~-~~~~~~~~ 525 (556)
+-++..|..++.+.. .+.+..+. ++ ...+..+.+.. .++++ +|++++ .++++.+||.. +.+.+...
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~-~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY-AADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE-CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 999877777775411 13454442 22 22455555443 45555 555555 67899999997 55554433
No 284
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.17 E-value=0.00031 Score=74.31 Aligned_cols=160 Identities=11% Similarity=0.072 Sum_probs=102.1
Q ss_pred EEeCCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEEecCCC----------ceEEEEEe-cCC---C
Q 008717 323 VSWSPNDHQLLTCGQE----------------EAIRRWDVNSGECLHVYEKTGV----------GLISCGWF-LDG---G 372 (556)
Q Consensus 323 l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~----------~v~~i~~~-~~~---~ 372 (556)
+++.++...++.+..+ +.|..+|.++|+.+-.++.... ++. +... .+| .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 4455667777777655 3799999999999888774322 121 2222 467 4
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEeec-c------------cCCC--------------------------eeEEEEccCC
Q 008717 373 GIFAGMTDKSICLWDLDGRELESWKG-Q------------KTLR--------------------------ISDMAITDDG 413 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~------------~~~~--------------------------v~~v~~s~~g 413 (556)
.++.++.+|.++++|.+++++..... . ...+ -..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67778899999999998765532221 1 0001 1246777776
Q ss_pred CEEEEEe---------------------------------------CCCeEEEEECCCCeeee-eecCCceEEEEEcCCC
Q 008717 414 KRIISIC---------------------------------------REAAILLLDREANFERW-IEEEEVITSFSLSKDN 453 (556)
Q Consensus 414 ~~l~~~~---------------------------------------~d~~I~i~d~~~~~~~~-~~~~~~i~~v~~sp~~ 453 (556)
.++++.. ..|.|..||+.+++... .....+..+-.+...+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag 484 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG 484 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecC
Confidence 6654431 34789999999988322 2222222222223356
Q ss_pred CEEEEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 454 ~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
..+++++.|+.++.||.+++ +.+.+++...
T Consensus 485 g~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~ 514 (599)
T 1w6s_A 485 DLVFYGTLDGYLKARDSDTG-DLLWKFKIPS 514 (599)
T ss_dssp TEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred CEEEEECCCCeEEEEECCCC-CEEEEeeCCC
Confidence 77888999999999999999 8888776443
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.15 E-value=0.0029 Score=69.00 Aligned_cols=207 Identities=10% Similarity=-0.024 Sum_probs=130.6
Q ss_pred cCCcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECC
Q 008717 271 HSDEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVN 347 (556)
Q Consensus 271 h~~~V~~~~~sp~g~~la-s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~ 347 (556)
....+..++|.+.+..|+ +-...+.|+.+++..... ......+.........|++.+.+..|+.+. ..+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345678899998555544 444567788888864211 011222332344567788887776565554 56789999987
Q ss_pred CCcEEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCe
Q 008717 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAA 424 (556)
Q Consensus 348 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~ 424 (556)
.......+.........|++.|.+.+|+.+.. .+.|...++++.....+..........|++++.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 55544444444456789999998666666653 26899999988766666554445799999998777766664 4568
Q ss_pred EEEEECCCCe-eeeeec---CCceEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCCcceeEE
Q 008717 425 ILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRY 480 (556)
Q Consensus 425 I~i~d~~~~~-~~~~~~---~~~i~~v~~sp~~~~l~~~-~~dg~I~lwd~~~~~~~~~~~ 480 (556)
|..+|+.... ..+... -.....|++. +.+|+.. ...+.|...|..++ +.+..+
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG-~~~~~l 639 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-SDVNLL 639 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-CCCEEE
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC-cceEEe
Confidence 9999987665 333322 2234566664 3345544 45577888887666 444444
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=0.00023 Score=72.32 Aligned_cols=151 Identities=8% Similarity=0.062 Sum_probs=102.0
Q ss_pred CeEEEEeCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeCC-C----cEEEEECCCCe
Q 008717 319 PVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K----SICLWDLDGRE 392 (556)
Q Consensus 319 ~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g----~i~vwd~~~~~ 392 (556)
....++++| ++..|+.+...+.|+.+|..++.... +.........++|+++++.++++... + .+..++..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 356889998 46667776666889999998766444 33355568899999999977766642 2 34445543321
Q ss_pred E--EEeecccCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCee-eeee--cCCceEEEEEcCCCCEEEEEE-cCCeE
Q 008717 393 L--ESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANFE-RWIE--EEEVITSFSLSKDNKYLLVNL-INQEI 465 (556)
Q Consensus 393 ~--~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~I~i~d~~~~~~-~~~~--~~~~i~~v~~sp~~~~l~~~~-~dg~I 465 (556)
. ..+.. ......++++| +|..+++-..++.|..||..+... .+.. .......++|+|+|++|+++. ..+.|
T Consensus 217 ~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 1 12222 22578899999 677666666788999999987763 3322 224578899999999665554 56789
Q ss_pred EEEEcCC
Q 008717 466 HLWSIES 472 (556)
Q Consensus 466 ~lwd~~~ 472 (556)
..++...
T Consensus 295 ~~~~~d~ 301 (430)
T 3tc9_A 295 LRSDYDW 301 (430)
T ss_dssp EEEEEET
T ss_pred EEEeCCc
Confidence 9988753
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.10 E-value=0.0037 Score=60.80 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=125.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
...+.++.|.+ +..++ ++.++.| |.... +...........+.+.+..+.+.+++..++++ .+|.|.. ..+.|+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC
Confidence 44688899976 44444 4455644 33332 33333222212234567788877666655554 4565433 223343
Q ss_pred EEEE-EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q 008717 351 CLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (556)
Q Consensus 351 ~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d 429 (556)
.-.. .......+..+.+.+++..++++...+..+-+|-.+..-..........+..+++++++..+ .++.+|.+++.+
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEec
Confidence 3222 23445578899999988777666443333334432222222222333478999999998755 445678887765
Q ss_pred CCCCe--eeee-e---cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC---ccCceeEEEEeecCCCCc
Q 008717 430 REANF--ERWI-E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---HKRARFVIRSCFGGFEQA 500 (556)
Q Consensus 430 ~~~~~--~~~~-~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~ 500 (556)
...+. .... . ....+.++.+.+++..++++. ++.| ++....+ +.-..+.. .....+. +.| .+++.
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~--v~~-~~~~~ 305 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYK--ILF-FSPDQ 305 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCE--EEE-EETTE
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEE--EEE-ECCCc
Confidence 33233 1111 1 223588999998888777655 6766 3444444 43343332 2233333 344 33444
Q ss_pred EEEEeeCCCcEEEEE
Q 008717 501 FIASGSEDSQNVPEI 515 (556)
Q Consensus 501 ~l~sgs~dg~v~iwd 515 (556)
+++++.+|.|.-++
T Consensus 306 -~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 -GFILGQKGILLRYV 319 (327)
T ss_dssp -EEEECSTTEEEEEC
T ss_pred -eEEEcCCceEEEEc
Confidence 56677889877664
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.10 E-value=0.0027 Score=69.27 Aligned_cols=224 Identities=8% Similarity=-0.072 Sum_probs=137.8
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCC----cEEEEEecCCCceEEEEE
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSG----ECLHVYEKTGVGLISCGW 367 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~ 367 (556)
...|+..++..... ..+......+..++|.+.+..|+.+. ..+.|+.+++... .....+.........+++
T Consensus 403 ~~~Ir~i~l~~~~~----~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp BSSEEEECTTSCCC----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ccceeEeeccCCcc----eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 34577766654321 12223345678999998666655554 4578998998652 223334334445678899
Q ss_pred ecCCCeEEEE-eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCee-eeee-cCC
Q 008717 368 FLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFE-RWIE-EEE 442 (556)
Q Consensus 368 ~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~~-~~~~-~~~ 442 (556)
.+.+..|+.+ ...+.|.+.++++.....+..........|+++|.+.+|+.+.. .+.|...++..... .+.. .-.
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~ 558 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 558 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC
Confidence 8877655554 45689999999987666655444447899999998766666553 26899999887663 3332 235
Q ss_pred ceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 443 VITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
..+.|++++.+..|+.+. ..+.|..+++... .....+.........+.+.. . .+.+.++-...+.|...+..+++.
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav-~-~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEE-e-CCEEEEEECCCCEEEEEeCCCCcc
Confidence 789999998777777665 3567999998654 33333332211111122333 1 334555555677888888766654
Q ss_pred ee
Q 008717 522 AA 523 (556)
Q Consensus 522 ~~ 523 (556)
+.
T Consensus 636 ~~ 637 (791)
T 3m0c_C 636 VN 637 (791)
T ss_dssp CE
T ss_pred eE
Confidence 33
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.06 E-value=0.0027 Score=62.46 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=107.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec---CCCCCeEEEEeCCC---CCEEEEEeC-C-----C
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS---GHRKPVFTVSWSPN---DHQLLTCGQ-E-----E 339 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~-d-----g 339 (556)
-...+.++|.|+|+++++ ..+|.|.+++ + +....+..+. ........++|+|+ +..|+.+.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345789999999985555 5669999888 2 3333333222 22456889999998 555555443 2 5
Q ss_pred cEEEEECCCCc-----EE-EEEe---cCCCceEEEEEecCCCeEEEEeC-------------CCcEEEEECCCC------
Q 008717 340 AIRRWDVNSGE-----CL-HVYE---KTGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDGR------ 391 (556)
Q Consensus 340 ~i~iwd~~~~~-----~~-~~~~---~~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~vwd~~~~------ 391 (556)
.|..++...+. .+ ..+. ........++|.|||...++.+. .|.|.-++.++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 68888876442 11 1132 11123367999999976665432 256766776541
Q ss_pred -------eEEEeecccCCCeeEEEEcc-CCCEEEEEeCCCe--------EEEEECCCC---------------e--eeee
Q 008717 392 -------ELESWKGQKTLRISDMAITD-DGKRIISICREAA--------ILLLDREAN---------------F--ERWI 438 (556)
Q Consensus 392 -------~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~--------I~i~d~~~~---------------~--~~~~ 438 (556)
....+...+. ....++|+| +|..+++-...+. |.+...... . ....
T Consensus 186 f~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred ccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 1112222221 478899999 6665554333232 333321110 0 0011
Q ss_pred ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.+......++| .+|.++++....+.|...++...
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 12234566777 46666665555667777777543
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.05 E-value=0.00036 Score=73.76 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=91.8
Q ss_pred CcEEEEECCCCcEEEEEecCC----------CceEEEEEe-cCCC---eEEEEeCCCcEEEEECCCCeEEEeecccC---
Q 008717 339 EAIRRWDVNSGECLHVYEKTG----------VGLISCGWF-LDGG---GIFAGMTDKSICLWDLDGRELESWKGQKT--- 401 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--- 401 (556)
+.|..+|..+|+.+-.++... .++. +... .+|+ .++.++.+|.++++|.+++++........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 589999999999988876421 1221 1221 4674 67889999999999998765432211110
Q ss_pred ----------CC--------------------------------eeEEEEccCCCEEEEEe-------------------
Q 008717 402 ----------LR--------------------------------ISDMAITDDGKRIISIC------------------- 420 (556)
Q Consensus 402 ----------~~--------------------------------v~~v~~s~~g~~l~~~~------------------- 420 (556)
.+ -..++++|+...+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 01356777655554432
Q ss_pred --------------CCCeEEEEECCCCeee-eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 421 --------------REAAILLLDREANFER-WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 421 --------------~d~~I~i~d~~~~~~~-~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
.+|.|..||+.+++.. ......++..-.+...+..+++++.|+.++.||.+++ +.+.+++...
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~ 527 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGS 527 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCC
Confidence 2578999999998822 2222223322222234667888999999999999999 8888887644
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.0017 Score=62.18 Aligned_cols=159 Identities=8% Similarity=0.036 Sum_probs=109.6
Q ss_pred CCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEecC-------CCceEEEEE---ecCCCeEEEEe-----
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKT-------GVGLISCGW---FLDGGGIFAGM----- 378 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~---~~~~~~l~~~~----- 378 (556)
....--.++.|.+....+..++ ..++|..||...+......... ...+..+.| .|++..+++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334455789988666666666 6899999999766544332211 114578999 68877766544
Q ss_pred --------CCCcEEEEECC---CCeE-EEee--c---c-------cCCCeeEEEEccCCCEEEEEeCC-CeEEEEECCCC
Q 008717 379 --------TDKSICLWDLD---GREL-ESWK--G---Q-------KTLRISDMAITDDGKRIISICRE-AAILLLDREAN 433 (556)
Q Consensus 379 --------~dg~i~vwd~~---~~~~-~~~~--~---~-------~~~~v~~v~~s~~g~~l~~~~~d-~~I~i~d~~~~ 433 (556)
.+..|..||+. +++. .... . . ......+++..++|+..++++.. +.|..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 25779999998 4433 2222 1 0 11248899999999999999888 88888888765
Q ss_pred e-eeeeec------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 434 F-ERWIEE------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 434 ~-~~~~~~------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
. ..+... ....+.++++|+|+.|++....|.|..+|+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 4 222111 223679999999999998877999999998854
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.03 E-value=0.00081 Score=65.87 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=116.1
Q ss_pred cEEEEEEccCCCEEEEEe------------CCCcEEEEEeecC-CeeEEEEEecC-----CCCCeEEEEeCC--CCC-EE
Q 008717 274 EVWFLQFSHDGKYLASSS------------KDQSAIIWEVKED-GQVSLKHRLSG-----HRKPVFTVSWSP--NDH-QL 332 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s------------~dg~i~iwd~~~~-~~~~~~~~~~~-----h~~~v~~l~~s~--~~~-~l 332 (556)
..-.++..|+|..+++++ .+|.|.++|..+. .....+ .+.+ .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788876555542 6899999998732 222222 2222 223566777655 454 45
Q ss_pred EEEe-C--CCcEEEEECCCC-cE---EEEEecC-CCceEEEEEecCCCeEEEEe-----------------CCCcEEEEE
Q 008717 333 LTCG-Q--EEAIRRWDVNSG-EC---LHVYEKT-GVGLISCGWFLDGGGIFAGM-----------------TDKSICLWD 387 (556)
Q Consensus 333 ~s~~-~--dg~i~iwd~~~~-~~---~~~~~~~-~~~v~~i~~~~~~~~l~~~~-----------------~dg~i~vwd 387 (556)
+.+. . +.+|.+|+++.+ .. +..+.+. -...+.+++.++|.+.++.. ..|.|..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4443 2 457888877543 22 2333322 34578999999998777654 124566666
Q ss_pred CCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC-Ce---eeeeecCCceEEEEEcC-CCCEEEEEEc
Q 008717 388 LDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA-NF---ERWIEEEEVITSFSLSK-DNKYLLVNLI 461 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~-~~---~~~~~~~~~i~~v~~sp-~~~~l~~~~~ 461 (556)
.. ++......- ...+.++|+||++.++.+. ..+.|..||+.. +. .......+..-.+++++ +|++.+++..
T Consensus 210 ~~--~~~~~~~~l-~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 PN--DVRVVAEGF-DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TT--CCEEEEEEE-SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred CC--eEEEeecCC-cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecC
Confidence 53 333332222 2689999999998776654 578899999864 32 22334456778899999 5987776654
Q ss_pred C-CeEEEEEc
Q 008717 462 N-QEIHLWSI 470 (556)
Q Consensus 462 d-g~I~lwd~ 470 (556)
+ +.|..||.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 4 34444443
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0029 Score=60.59 Aligned_cols=199 Identities=11% Similarity=0.103 Sum_probs=128.9
Q ss_pred ccCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecC----CCC--CeEEEEe---CCCCCEEEEEe---
Q 008717 270 AHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSG----HRK--PVFTVSW---SPNDHQLLTCG--- 336 (556)
Q Consensus 270 ~h~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~----h~~--~v~~l~~---s~~~~~l~s~~--- 336 (556)
...---.+++|.+....+..++ ..++|..|+...+.. ... .+.+ ... .+..+.| .|+++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 3344455788988555555555 789999999874322 222 3332 111 3579999 68877777543
Q ss_pred ----------CCCcEEEEECC---CCcEEEEEe--c-----------CCCceEEEEEecCCCeEEEEeCC-CcEEEEECC
Q 008717 337 ----------QEEAIRRWDVN---SGECLHVYE--K-----------TGVGLISCGWFLDGGGIFAGMTD-KSICLWDLD 389 (556)
Q Consensus 337 ----------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~i~~~~~~~~l~~~~~d-g~i~vwd~~ 389 (556)
.+..|..+|+. +++.+.... . .......++..++|+..++++.. +.|...+.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 15679999998 787665544 1 11357899999999999999988 888888888
Q ss_pred CCeEEEeeccc-----CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCee-ee-e---e---cCCceEEE-EEcCCCCE
Q 008717 390 GRELESWKGQK-----TLRISDMAITDDGKRIISICREAAILLLDREANFE-RW-I---E---EEEVITSF-SLSKDNKY 455 (556)
Q Consensus 390 ~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~~-~~-~---~---~~~~i~~v-~~sp~~~~ 455 (556)
+..+..+.... ....+.|+++|+|+.|++....+.|..+|+..... .+ . + .-.....+ ..-.+|+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 76555443211 11367999999999988887799999999885432 11 1 1 11223343 33347777
Q ss_pred EEEEE-cCCeEEEEEc
Q 008717 456 LLVNL-INQEIHLWSI 470 (556)
Q Consensus 456 l~~~~-~dg~I~lwd~ 470 (556)
++++. ..+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 248 VLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEETTEEEEEECS
T ss_pred EEEEcCCCCEEEEECC
Confidence 55544 4555555543
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.98 E-value=0.015 Score=56.53 Aligned_cols=238 Identities=6% Similarity=-0.014 Sum_probs=126.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEE-ecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
...+.++.|.+++..+++| .+|.| +...+.+........ .......+.++.+.+ +. ++.++.++.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 4579999998888777754 56654 222332323322211 112244688999976 33 444556665544 333344
Q ss_pred EEEEEec---CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEE
Q 008717 351 CLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (556)
Q Consensus 351 ~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i 427 (556)
.-..... ....+..+.+.+++..++++ .+|.|..-+=.+..-..........+..+++.+++.+++++...+..+-
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 3333221 23457778877766655554 4565533211133333333333347899999999887776644433333
Q ss_pred EEC--CCCeeeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe-C---ccCceeEEEEeecCCCCcE
Q 008717 428 LDR--EANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-G---HKRARFVIRSCFGGFEQAF 501 (556)
Q Consensus 428 ~d~--~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~ 501 (556)
.|- .+.+.........+..+.++++++.+++ +.+|.+++.+...+ +.-..+. + +...+ ..+.+ .+++.+
T Consensus 189 ~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~--~~v~~-~~~~~~ 263 (327)
T 2xbg_A 189 WEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS-ENWGELLSPLRRNSVGF--LDLAY-RTPNEV 263 (327)
T ss_dssp ECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEE-EEECCCBCTTSSCCSCE--EEEEE-SSSSCE
T ss_pred eCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCC-CeeEeccCCcccCCcce--EEEEe-cCCCEE
Confidence 443 2222222334567889999999876654 45788777642222 2222221 1 11222 33445 667776
Q ss_pred EEEeeCCCcEEEEEcCCCcee
Q 008717 502 IASGSEDSQNVPEILLSESVA 522 (556)
Q Consensus 502 l~sgs~dg~v~iwd~~~~~~~ 522 (556)
++++ .+|.| .+....++.-
T Consensus 264 ~~~g-~~g~i-~~S~DgG~tW 282 (327)
T 2xbg_A 264 WLAG-GAGAL-LCSQDGGQTW 282 (327)
T ss_dssp EEEE-STTCE-EEESSTTSSC
T ss_pred EEEe-CCCeE-EEeCCCCccc
Confidence 6655 46766 3455555443
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.98 E-value=0.025 Score=60.12 Aligned_cols=227 Identities=10% Similarity=-0.044 Sum_probs=144.2
Q ss_pred EEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEecCCCceEE
Q 008717 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKTGVGLIS 364 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 364 (556)
+|+.+ ....|+..++.+... .....+. .-..+..++|++.+..|+.+. .++.|..+++........+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~-~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN-NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC-EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCc-ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 44444 456788888875422 1111222 234678999999777666554 4688999998765444444433345678
Q ss_pred EEEecCCCeEEEE-eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCe-eeeeec
Q 008717 365 CGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ERWIEE 440 (556)
Q Consensus 365 i~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~-~~~~~~ 440 (556)
+++.+.+..|+.+ ...+.|.+.++++.....+..........++++|....|+.... .+.|...++.... ..+...
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC
Confidence 8888766655554 45678999999876544444333347899999996666665553 5688888887765 444445
Q ss_pred CCceEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCC
Q 008717 441 EEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSE 519 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~ 519 (556)
-.....+++++++..|+.+. ..+.|..+|+... .. ..+.......+. ++. . .+.+.++-...+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~-~~-~v~~~~l~~P~g--lav-~-~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL-NR-EVIADDLPHPFG--LTQ-Y-QDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC-EEEEECCSCEEE--EEE-E-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCC-ce-EEeeccCCCceE--EEE-E-CCEEEEecCCCCEEEEEECCCC
Confidence 56788999999877776665 4578999998764 32 333322222223 333 1 2455555556788888887666
Q ss_pred ce
Q 008717 520 SV 521 (556)
Q Consensus 520 ~~ 521 (556)
+.
T Consensus 239 ~~ 240 (628)
T 4a0p_A 239 QN 240 (628)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 296
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.95 E-value=0.0031 Score=60.39 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=121.3
Q ss_pred CCEEEEEeCC----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCcEEEE
Q 008717 284 GKYLASSSKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGECLHV 354 (556)
Q Consensus 284 g~~las~s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 354 (556)
+..++.|+.+ ..+.+||..+. ....+..+......-..+.+ ++..++.|+.+ ..+.+||..+.+....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3445555533 35778887754 33222222221111122222 56777777754 3588999987764332
Q ss_pred Ee--cCCCceEEEEEecCCCeEEEEeCCC-----cEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-----
Q 008717 355 YE--KTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE----- 422 (556)
Q Consensus 355 ~~--~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----- 422 (556)
-. ........+. .++..++.|+.++ .+.+||+.+..-..............+..-+++.++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 22 1111122222 2677777777553 57889998766554433222122112222356666666542
Q ss_pred --CeEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCCcceeEEeCccCceeEEEE
Q 008717 423 --AAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (556)
Q Consensus 423 --~~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (556)
..+.+||+.+.+ ....... ..-.+++.. ++++++.|+.+ ..+.+||+.+. + -..+...........+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTN-A-WRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCC-C-EeeCCCCCCccccCeE
Confidence 458999999887 2222111 111122222 57777777764 36899998775 2 2222222111111112
Q ss_pred eecCCCCcEEEEeeCCC-----cEEEEEcCCCceeee
Q 008717 493 CFGGFEQAFIASGSEDS-----QNVPEILLSESVAAA 524 (556)
Q Consensus 493 ~~~s~~~~~l~sgs~dg-----~v~iwd~~~~~~~~~ 524 (556)
+. .++++++.|+.++ .+.+||+.+.+-...
T Consensus 248 ~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 248 CA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred EE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 22 2677878887654 489999988765443
No 297
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.94 E-value=0.00075 Score=64.78 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=121.7
Q ss_pred CCCEEEEEe-CC-----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCc-
Q 008717 283 DGKYLASSS-KD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE- 350 (556)
Q Consensus 283 ~g~~las~s-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~- 350 (556)
++..++.|+ .+ ..+.+||..+. ....+..+.........+. .++..++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445556665 22 36788888754 3322222222112222222 256777777765 469999998776
Q ss_pred --EEEEEe--cCCCceEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 351 --CLHVYE--KTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 351 --~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
....-. ........+. .++..++.|+.+ ..+.+||+.+..-..............+..-+++.++.|+.
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred CeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 333221 1122222222 266777777643 36889999876554443322212222222336777777765
Q ss_pred C-----CeEEEEECCCCe-eeeeecCCc--eEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCCcceeEEeCccCcee
Q 008717 422 E-----AAILLLDREANF-ERWIEEEEV--ITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARF 488 (556)
Q Consensus 422 d-----~~I~i~d~~~~~-~~~~~~~~~--i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~ 488 (556)
+ ..+.+||+.+.+ ........+ -.+++. -+++.++.|+.+ ..+.+||+.+. + -..+........
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCccc
Confidence 4 469999999887 322211111 112222 256777777764 46899999875 2 222221111111
Q ss_pred EEEEeecCCCCcEEEEeeCC-----CcEEEEEcCCCcee
Q 008717 489 VIRSCFGGFEQAFIASGSED-----SQNVPEILLSESVA 522 (556)
Q Consensus 489 ~i~~~~~s~~~~~l~sgs~d-----g~v~iwd~~~~~~~ 522 (556)
...++. .++++++.|+.+ ..|.+||+.+.+-.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred ceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 111222 267777778765 35788898876643
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.93 E-value=0.0086 Score=57.89 Aligned_cols=190 Identities=14% Similarity=0.231 Sum_probs=121.4
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCC----CC---EEEEEeC---CCcEEEEEC--CCCc
Q 008717 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN----DH---QLLTCGQ---EEAIRRWDV--NSGE 350 (556)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~---~l~s~~~---dg~i~iwd~--~~~~ 350 (556)
...+++...+.+-+.+||+. + +.+..+.. +.++.+..-|+ |+ ++++... +++|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-G---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-S---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcCC-C---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 44566666678899999994 4 33444442 56677666552 22 2333333 478999977 3443
Q ss_pred EEEEEec------CC-CceEEEEE--ecC-CC-eEEEEeCCCcEEEEECC---C-----CeEEEeecccCCCeeEEEEcc
Q 008717 351 CLHVYEK------TG-VGLISCGW--FLD-GG-GIFAGMTDKSICLWDLD---G-----RELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 351 ~~~~~~~------~~-~~v~~i~~--~~~-~~-~l~~~~~dg~i~vwd~~---~-----~~~~~~~~~~~~~v~~v~~s~ 411 (556)
+..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. . +.++.+... +.+..+...+
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd 189 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADD 189 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEET
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcC
Confidence 444421 11 45666777 664 43 67888889999999882 1 223344333 3789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-----Ce-eeeeec---CCceEEEEE--cCCCC-EEEEEE-cCCeEEEEEcCCCCccee
Q 008717 412 DGKRIISICREAAILLLDREA-----NF-ERWIEE---EEVITSFSL--SKDNK-YLLVNL-INQEIHLWSIESDPKLVS 478 (556)
Q Consensus 412 ~g~~l~~~~~d~~I~i~d~~~-----~~-~~~~~~---~~~i~~v~~--sp~~~-~l~~~~-~dg~I~lwd~~~~~~~~~ 478 (556)
....|+.+-.+.-|..||... .+ ...... ...+..+++ .++++ ||++++ .+++..+||.....+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 889999999998888888552 22 222222 246888888 45555 677666 567999999973227777
Q ss_pred EEe
Q 008717 479 RYK 481 (556)
Q Consensus 479 ~~~ 481 (556)
.|.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 299
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.93 E-value=0.0019 Score=65.49 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=120.4
Q ss_pred ceeEEecccCCcEEEEEEccCCCEEEEEeCC---Cc-EEEEEeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeC
Q 008717 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QS-AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQ 337 (556)
Q Consensus 263 ~~~~~l~~h~~~V~~~~~sp~g~~las~s~d---g~-i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~ 337 (556)
..+..+.+.......++|+++|+++++.... .. +...+.... ......+. .-.....++++| ++...++-..
T Consensus 172 g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~--~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~ 248 (433)
T 4hw6_A 172 QYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG--FTERLSLC-NARGAKTCAVHPQNGKIYYTRYH 248 (433)
T ss_dssp TEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT--TCCEEEEE-ECSSBCCCEECTTTCCEEECBTT
T ss_pred CEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC--eecccccc-ccCCCCEEEEeCCCCeEEEEECC
Confidence 3444444455678999999999944443311 12 222222211 11001111 123346678999 6665555556
Q ss_pred CCcEEEEECCCCcEEEEE-ecC-CCceEEEEEecCCCeEEEEe-CCCcEEEEECC--CCeE---EEeecc----------
Q 008717 338 EEAIRRWDVNSGECLHVY-EKT-GVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GREL---ESWKGQ---------- 399 (556)
Q Consensus 338 dg~i~iwd~~~~~~~~~~-~~~-~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~---~~~~~~---------- 399 (556)
++.|+.+|..++.....+ ... ......++|+|+++.|+.+. ..+.|..++.+ ++.+ ..+...
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~ 328 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGM 328 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCc
Confidence 788999999878763333 211 22234699999999666555 56789998875 2321 111111
Q ss_pred ----cCCCeeEEEE---------ccCCCEEEEEeCCCeEEEEECCCCe-eeeeec------------------CCceEEE
Q 008717 400 ----KTLRISDMAI---------TDDGKRIISICREAAILLLDREANF-ERWIEE------------------EEVITSF 447 (556)
Q Consensus 400 ----~~~~v~~v~~---------s~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~------------------~~~i~~v 447 (556)
.-.....+++ .++|.++++-...+.|+.++. ++. ..+.+. -.....+
T Consensus 329 ~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi 407 (433)
T 4hw6_A 329 GTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSI 407 (433)
T ss_dssp GGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred ccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEE
Confidence 1124677999 777777777667788999985 444 333221 1236788
Q ss_pred EEc-CCCCEEEEEEcCCeEEEEEcC
Q 008717 448 SLS-KDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 448 ~~s-p~~~~l~~~~~dg~I~lwd~~ 471 (556)
+++ ++|.++++-..++.|+.++++
T Consensus 408 avd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 408 AYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEEeCCCCEEEEEecC
Confidence 999 566666555566788887764
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.90 E-value=0.016 Score=56.93 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=123.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEec---CCCCCeEEEEeCCC---CCEEEEEeC----C---
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS---GHRKPVFTVSWSPN---DHQLLTCGQ----E--- 338 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~----d--- 338 (556)
-...+.++|.|+|+++++ ..+|.|++++. ++. ..+..+. ........++++|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~--~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP--SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS--SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC--CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 456789999999985554 56699988863 233 3333222 22356889999997 555555443 2
Q ss_pred -CcEEEEECCCC--c-----EE-EEEec-CCCceEEEEEecCCCeEEEEeC-------------CCcEEEEECCCC----
Q 008717 339 -EAIRRWDVNSG--E-----CL-HVYEK-TGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDGR---- 391 (556)
Q Consensus 339 -g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~vwd~~~~---- 391 (556)
..|..|+...+ . .+ ..+.. .......++|.|||..+++.+. .|.|.-++.++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777877654 1 11 11221 1122467899999987666432 246766676553
Q ss_pred ----eEEEeecccCCCeeEEEEcc-CCCEEEEEeCCC---eEEEEECCCC----------------e-eeee-ecCCceE
Q 008717 392 ----ELESWKGQKTLRISDMAITD-DGKRIISICREA---AILLLDREAN----------------F-ERWI-EEEEVIT 445 (556)
Q Consensus 392 ----~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~---~I~i~d~~~~----------------~-~~~~-~~~~~i~ 445 (556)
....+...+. ....++|+| +|..+++-...+ .|.+...... . .... .....+.
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1122222222 578899999 666555432221 2443322110 0 0111 1234577
Q ss_pred EEEEc-------CCCCEEEEEEcCCeEEEEEcCCCCcce--eEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 446 SFSLS-------KDNKYLLVNLINQEIHLWSIESDPKLV--SRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 446 ~v~~s-------p~~~~l~~~~~dg~I~lwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
.++|. .+|.++++....+.|...++....... ..+.... ......+++ .|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~-~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVI-DDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEE-CTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEE-CCCCcEEEEEe
Confidence 88884 467777666667788888886531222 2222111 111244555 78887655543
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.84 E-value=7.9e-05 Score=80.70 Aligned_cols=223 Identities=8% Similarity=-0.069 Sum_probs=130.1
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEEECCC----CcEEEEEecCCCceEEEEE
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNS----GECLHVYEKTGVGLISCGW 367 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~ 367 (556)
...|+..++.+.. . ..+......+..++|.+.+..|+.+.. .+.|+.+++.+ ......+.........+++
T Consensus 385 ~~~I~~id~~~~~---~-~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSE---Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCC---E-ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCc---c-eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 3567777766432 1 112222345678899987777776654 57899999875 2222222111223456777
Q ss_pred ecCCCeE-EEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCee-eee-ecCC
Q 008717 368 FLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFE-RWI-EEEE 442 (556)
Q Consensus 368 ~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~~-~~~-~~~~ 442 (556)
.+.+..| ++-...+.|.++++.+.....+..........++++|.+.+|+.+.. .+.|..+++..... .+. ..-.
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 7544444 44455678999999887666555443346789999997665555443 26788888765542 222 2234
Q ss_pred ceEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCCcceeEEeC-c--cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 443 VITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYKG-H--KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~-~~dg~I~lwd~~~~~~~~~~~~~-~--~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
..+.|+|+|++..|+++ +..+.|..+++... . ...+.. . ...... +.+ . .+.++++....+.|..++..+
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~~~~P~g--lav-d-~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFS--LAV-F-EDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSS-C-CEEECCCSSSCSSCCC--CEE-E-TTEEEEECSTTTCEEEEETTT
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCC-c-eEEEEecCCcCCCceE--eEE-E-CCEEEEEeCCCCeEEEEEccC
Confidence 56789999976655554 45678999998653 2 222221 1 111111 222 2 234555666678999999877
Q ss_pred Cceeeee
Q 008717 519 ESVAAAA 525 (556)
Q Consensus 519 ~~~~~~~ 525 (556)
++....+
T Consensus 615 G~~~~~i 621 (699)
T 1n7d_A 615 GSDVNLL 621 (699)
T ss_dssp EEEEECC
T ss_pred CCceEEe
Confidence 7654443
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.83 E-value=0.00013 Score=78.91 Aligned_cols=207 Identities=12% Similarity=-0.013 Sum_probs=122.9
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEE-EEeCCCcEEEEECCCC
Q 008717 273 DEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSG 349 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~ 349 (556)
..+..++|.+.+..|+.+ ...+.|+.+++..... ......+...-.....+++.+.+..|+ +-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456688999877666655 3557888888864100 001111111122345678876554444 4345678999998765
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE-EEeCCCeEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SICREAAIL 426 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~I~ 426 (556)
.....+.........+++.|.+.+|+.+.. .+.|..+++.+.....+........+.|+|+|++..|+ +-+..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 444333333344577899986666555543 26888888876544443333333678999999766554 444567899
Q ss_pred EEECCCCe-eeeee---cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 427 LLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 427 i~d~~~~~-~~~~~---~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.+|+.... ..+.. .......+++..+ .++++....+.|..+|..++ +.+..+.
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~~~i~ 622 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG-SDVNLLA 622 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE-EEEECCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC-CceEEee
Confidence 99997654 33322 1233455666544 34444455678999998776 5555553
No 303
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.83 E-value=0.0074 Score=58.18 Aligned_cols=228 Identities=9% Similarity=0.047 Sum_probs=120.5
Q ss_pred EEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC----C-------CcEEEEECCCCcEEEEE
Q 008717 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----E-------EAIRRWDVNSGECLHVY 355 (556)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~ 355 (556)
++.|+ ..+.+||..++ .... ..+..............++..++.|+. + ..+.+||..+++....-
T Consensus 8 ~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 44454 57889998864 3332 233222223333334457788888873 1 12778898877643221
Q ss_pred ecCCCce-EEEEEecCCCeEEEEeCC--------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-C---
Q 008717 356 EKTGVGL-ISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--- 422 (556)
Q Consensus 356 ~~~~~~v-~~i~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d--- 422 (556)
....... .+++.. ++..++.|+.+ ..+.+||..+..-..............+...+++.++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 1111111 122222 66667777632 35899999876654443322222222233346667777765 2
Q ss_pred --CeEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcCC-----eEEEEEcCCCCcceeEEeCccCceeEEEE
Q 008717 423 --AAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (556)
Q Consensus 423 --~~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~dg-----~I~lwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (556)
..+.+||..+.+ ....... ..-.+++.. +++.++.|+.++ .+.+||+.+. + -..+.....+.....+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDN-K-WAPFEAFPQERSSLSL 239 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTT-E-EEEECCCSSCCBSCEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCC-e-EEECCCCCCcccceeE
Confidence 469999999887 2222111 111122222 677778887654 5888998775 2 2222221111111112
Q ss_pred eecCCCCcEEEEeeCC--------------CcEEEEEcCCCceeee
Q 008717 493 CFGGFEQAFIASGSED--------------SQNVPEILLSESVAAA 524 (556)
Q Consensus 493 ~~~s~~~~~l~sgs~d--------------g~v~iwd~~~~~~~~~ 524 (556)
+. .++++++.|+.+ ..+.+||+.+.+-...
T Consensus 240 ~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 240 VS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 22 266777777764 2478889988765544
No 304
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.82 E-value=0.003 Score=60.70 Aligned_cols=228 Identities=11% Similarity=0.063 Sum_probs=121.9
Q ss_pred EEEEEeC--CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC----CcEEEEECCCCcEEEEEec--
Q 008717 286 YLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNSGECLHVYEK-- 357 (556)
Q Consensus 286 ~las~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~-- 357 (556)
+++.|+. ...+.+||..++ ....+..+.........+.+ ++..++.|+.+ ..+.+||..+++....-..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4555554 356888888754 33322222222222222222 56677777755 5688999988765433221
Q ss_pred CCCceEEEEEecCCCeEEEEeCC------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC---------C
Q 008717 358 TGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---------E 422 (556)
Q Consensus 358 ~~~~v~~i~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~---------d 422 (556)
.......+. -++..++.|+.+ ..+.+||..+..-..............+..-+++.++.|+. -
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 122222222 267777777755 46899999887655443322212222222236666666653 3
Q ss_pred CeEEEEECCCCe-eeeeecCC--ceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCCcceeEEeCccCceeEEEEee
Q 008717 423 AAILLLDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (556)
Q Consensus 423 ~~I~i~d~~~~~-~~~~~~~~--~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (556)
..+.+||..+.+ ........ .-.+++.. ++++++.|+.+ ..+.+||+.+. + -..+...........++.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN-E-WKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT-E-EEECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC-c-EEECCCCCCCccceeEEE
Confidence 558999999987 32222111 11122222 66777777653 45889998775 2 222211111111111222
Q ss_pred cCCCCcEEEEeeCC-----CcEEEEEcCCCceee
Q 008717 495 GGFEQAFIASGSED-----SQNVPEILLSESVAA 523 (556)
Q Consensus 495 ~s~~~~~l~sgs~d-----g~v~iwd~~~~~~~~ 523 (556)
-++++++.|+.+ ..+.+||+.+.+-..
T Consensus 246 --~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 246 --VGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp --ETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred --ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 267788888754 468899998876543
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.017 Score=61.36 Aligned_cols=197 Identities=10% Similarity=-0.082 Sum_probs=128.3
Q ss_pred CCcEEEEEEccCCCEEEE-EeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCC
Q 008717 272 SDEVWFLQFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSG 349 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~ 349 (556)
-..+..++|++.+..|.. -..++.|..+++.... .. ..+.........+++.+.+..|+.+. ..+.|.+.+++..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 346789999996666554 4467888888876432 11 22222223466788877666565554 4678999998755
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~ 426 (556)
.....+...-.....+++.|....|+.+.. .+.|...++++.....+... ......+++++++..|+.+. ..+.|.
T Consensus 113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~-~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC-CCCcceEEEccccCEEEEEECCCCEEE
Confidence 433333344455789999996666666553 56888899987655544432 33789999999877666654 567899
Q ss_pred EEECCCCe-eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.+|+.... ..+.........+++.. +..+++-...+.|...|..++
T Consensus 192 ~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 192 SSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 99997755 33333344566788865 344444445788988887665
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.035 Score=52.75 Aligned_cols=235 Identities=11% Similarity=0.155 Sum_probs=153.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcEEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVY 355 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 355 (556)
+.-.+|..+.||.-. ..++.|+|+++.. .++.+.- ...|..-.|-.+. .|+-.+ +..|+-|++.. ..+++.+
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~---klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTE---EEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhh---hhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceee
Confidence 344688888887765 6789999999763 3344332 4578888887543 444433 35899999964 4567777
Q ss_pred ecC----CCceEEEEEecCCCeEEEEeC-------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCC-----CEEEEE
Q 008717 356 EKT----GVGLISCGWFLDGGGIFAGMT-------DKSICLWDLDGRELESWKGQKTLRISDMAITDDG-----KRIISI 419 (556)
Q Consensus 356 ~~~----~~~v~~i~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g-----~~l~~~ 419 (556)
..| ...|..-..+++.++++..+- .|.+.+|..+.+....+.++-. .. ..+-.+| ..++.+
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa-~F--~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-SF--AQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE-EE--EEECCTTCSSCEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeee-ee--EEEecCCCCCCceEEEEE
Confidence 765 456777778888888776542 3678899988766555544321 11 1222222 123333
Q ss_pred eC---CCeEEEEECCCC---e----e----eeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 420 CR---EAAILLLDREAN---F----E----RWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 420 ~~---d~~I~i~d~~~~---~----~----~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
.. .+.+++.++... . . .+... ..-..++.+|+.-..+..-+.-|.|++||+.++ .++..-+-
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-t~i~~nrI 299 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRI 299 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-cEEEEecc
Confidence 22 258999998543 1 1 11111 333567888888888999999999999999999 88888777
Q ss_pred ccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeeee
Q 008717 483 HKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 525 (556)
....++. .+. ..+..=+++....|.|.--.+....++...
T Consensus 300 S~d~iF~--ta~-~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi 339 (365)
T 2xzh_A 300 SGETIFV--TAP-HEATAGIIGVNRKGQVLSVCVEEENIIPYI 339 (365)
T ss_dssp CSSCEEE--EEE-EGGGTEEEEEETTCEEEEEEECTTTHHHHH
T ss_pred CCCceEE--ecc-cCCCCcEEEEcCCCEEEEEEECcccEehhh
Confidence 7777765 333 333334566678998888888877765443
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.69 E-value=0.018 Score=61.23 Aligned_cols=223 Identities=12% Similarity=-0.013 Sum_probs=132.2
Q ss_pred CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC-CCcEEEEECCCCcE-EEEEecCCCceEEEEEec
Q 008717 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGEC-LHVYEKTGVGLISCGWFL 369 (556)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~ 369 (556)
....|+..++..... ....+...-.....++|++.+..|+.+.. .+.|..+++..... ...+...-.....+++.+
T Consensus 16 ~~~~I~~i~~~~~~~--~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 16 NRRDLRLVDATNGKE--NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred ccccEEEEeCCCCcc--eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 356788877764310 11122223445789999997777776654 57898999875532 233333335678999998
Q ss_pred CCCeEEEE-eCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCe-eeee-ecCCce
Q 008717 370 DGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ERWI-EEEEVI 444 (556)
Q Consensus 370 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~--d~~I~i~d~~~~~-~~~~-~~~~~i 444 (556)
.+..++.+ ...+.|.+.++++.....+..........++++|.+..|+.+.. .+.|...++.... ..+. ..-...
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence 66655555 45689999999886655554334447899999998666666553 4678778877654 3332 234568
Q ss_pred EEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCce
Q 008717 445 TSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 445 ~~v~~sp~~~~l~~~~-~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
+.+++++++..|+.+. ..+.|..+|+... .......+.....+. +.+ ..+ .+.++-...+.|...|..+++.
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~g--i~~-~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFA--LTL-FED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC---------CCC--EEE-SSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEEEEeCCCCCceE--EEE-eCC-EEEEecCCCCEEEEEECCCCcc
Confidence 8999999776666664 4567888888654 222222211111112 233 223 4455555678888888877654
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.68 E-value=0.0094 Score=63.34 Aligned_cols=199 Identities=7% Similarity=-0.052 Sum_probs=124.0
Q ss_pred CCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEECCCC
Q 008717 272 SDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSG 349 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~ 349 (556)
-..+..++|++.+..|+.+. ..+.|..++...... ....+...-.....+++.+.+..|+.+. ..+.|.+.+++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 44578999999766666554 467788888864311 1122333335678999998666555554 5688999998755
Q ss_pred cEEEEEecCCCceEEEEEecCCCeEEEEeC--CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEE
Q 008717 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (556)
Q Consensus 350 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~ 426 (556)
.....+...-.....+++.|.+..|+.+.. .+.|...++++.....+........+.+++++++..|+.+. ..+.|.
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 433333344455678999997666666653 46788888887655555433344789999999777666554 557799
Q ss_pred EEECCCCee-eeee-cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 427 LLDREANFE-RWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 427 i~d~~~~~~-~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.+|+..... .+.. .......+++..+ ..+++-...+.|...|..++
T Consensus 197 ~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 197 KSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 999877652 2221 2223456777655 33334445677888887665
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.65 E-value=0.018 Score=56.62 Aligned_cols=227 Identities=11% Similarity=0.076 Sum_probs=118.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE-EEEE----ecCCCCCeEEEEeCCC---CCEEEEEeC------
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHR----LSGHRKPVFTVSWSPN---DHQLLTCGQ------ 337 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~~~~----~~~h~~~v~~l~~s~~---~~~l~s~~~------ 337 (556)
-...+.++|.|+|++|+.+...|.|++++.. +... .+.. ..........++|+|+ +..|+.+..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 4467899999999934444567889888743 2211 1111 1122345789999996 555554432
Q ss_pred --CCcEEEEECCCC--c--EEE-EEec------CCCceEEEEEecCCCeEEEEeC-------------CCcEEEEECCCC
Q 008717 338 --EEAIRRWDVNSG--E--CLH-VYEK------TGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDGR 391 (556)
Q Consensus 338 --dg~i~iwd~~~~--~--~~~-~~~~------~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~vwd~~~~ 391 (556)
...|..|+...+ . ... .+.. .......++|.|||.+.++.+. .|.|.-+|.++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666766533 1 111 1211 1112357999999965555433 246777777653
Q ss_pred -------------eEEEeecccCCCeeEEEEcc-CCCEEEEEeCCC--eEEEEECCCCe---------------------
Q 008717 392 -------------ELESWKGQKTLRISDMAITD-DGKRIISICREA--AILLLDREANF--------------------- 434 (556)
Q Consensus 392 -------------~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~--~I~i~d~~~~~--------------------- 434 (556)
....+...+. ....++|+| +|. |.++.... .=.|.-+..+.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 1122222222 588999999 555 44433321 11121111110
Q ss_pred -----------eeeeecCCceEEEEEcC-------CCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC-ceeEEEEeec
Q 008717 435 -----------ERWIEEEEVITSFSLSK-------DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFG 495 (556)
Q Consensus 435 -----------~~~~~~~~~i~~v~~sp-------~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~-~~~~i~~~~~ 495 (556)
.....+...+..+.|.. +|.++++....+.|...++..+ +.+....--.. ......+.+
T Consensus 253 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~rp~~v~~- 330 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQRIRDVRT- 330 (353)
T ss_dssp CBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCCCEEEEEE-
T ss_pred cCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCCceeEEEE-
Confidence 01112233566778864 4667776666778888887754 33322111001 112344555
Q ss_pred CCCCcEEEE
Q 008717 496 GFEQAFIAS 504 (556)
Q Consensus 496 s~~~~~l~s 504 (556)
.|||.+.++
T Consensus 331 ~pdG~lyv~ 339 (353)
T 2g8s_A 331 GPDGYLYVL 339 (353)
T ss_dssp CTTSCEEEE
T ss_pred CCCCcEEEE
Confidence 788886554
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.63 E-value=0.062 Score=53.14 Aligned_cols=236 Identities=10% Similarity=0.158 Sum_probs=154.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcEEEEE
Q 008717 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVY 355 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 355 (556)
+.-.+|..+.||.-. ..++.|+|+++.. .++.+.- ...|..-.|-.+ +.|+-.+ +..|+-|++.. ..+++.+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~---klks~~~-~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTE---EEEEEEC-SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhh---hhcceec-CCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhhe
Confidence 445788888777764 6799999999763 3344433 346777777643 3444433 45899999964 3567777
Q ss_pred ecC----CCceEEEEEecCCCeEEEEe-------CCCcEEEEECCCCeEEEeecccCCCeeEEEEccC---CCEEEEEeC
Q 008717 356 EKT----GVGLISCGWFLDGGGIFAGM-------TDKSICLWDLDGRELESWKGQKTLRISDMAITDD---GKRIISICR 421 (556)
Q Consensus 356 ~~~----~~~v~~i~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~---g~~l~~~~~ 421 (556)
..| ...|..-..+++.++++..+ -.|.+.+|..+.+....+.+|-. ....+.+..+ ...++.+..
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEE-EEEEEECTTCSSEEEEEEEEEC
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeee-eeEEEecCCCCCCceEEEEEEe
Confidence 765 46677777888889887644 24678899987766555544321 2222222111 123333333
Q ss_pred ---CCeEEEEECCCC---e----e----eeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCcc
Q 008717 422 ---EAAILLLDREAN---F----E----RWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (556)
Q Consensus 422 ---d~~I~i~d~~~~---~----~----~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~ 484 (556)
.+.++|.++... . . .+... ..-..++.+|+.-..+..-+.-|.|++||+.++ .++..-+-..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~ 300 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISG 300 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccC
Confidence 278999998643 1 1 11111 233567889998889999999999999999999 8888777777
Q ss_pred CceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 485 RARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 485 ~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
..++. .+. ..+..=+++....|.|.--.+....++..
T Consensus 301 ~~iF~--t~~-~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpy 337 (494)
T 1bpo_A 301 ETIFV--TAP-HEATAGIIGVNRKGQVLSVCVEEENIIPY 337 (494)
T ss_dssp SCEEE--EEE-ETTTTEEEEEETTCEEEEEEECTTTHHHH
T ss_pred CceEE--ecc-cCCCCcEEEEccCceEEEEEEccccchhh
Confidence 77766 444 33334456667899988888887776544
No 311
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.62 E-value=0.009 Score=57.40 Aligned_cols=232 Identities=9% Similarity=-0.071 Sum_probs=120.8
Q ss_pred CCCEEEEEeC----CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC----C-----CcEEEEECCCC
Q 008717 283 DGKYLASSSK----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----E-----EAIRRWDVNSG 349 (556)
Q Consensus 283 ~g~~las~s~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~ 349 (556)
++..++.|+. -..+.+||..+. ....+..+.........+.+ ++..++.|+. + ..+.+||..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 5566666653 235788887754 23222222211111122222 5667777765 2 46889999877
Q ss_pred cEEEEEe--cCCCceEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC
Q 008717 350 ECLHVYE--KTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (556)
Q Consensus 350 ~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 422 (556)
+....-. ........+.+ ++..++.|+.+ ..+.+||+.+..-..............+..-++..++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence 6433211 11222222222 66777776643 368899998766554433222111111222266677777654
Q ss_pred -----CeEEEEECCCCe-eeeeec--CCceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCCcceeEEeCccCceeE
Q 008717 423 -----AAILLLDREANF-ERWIEE--EEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFV 489 (556)
Q Consensus 423 -----~~I~i~d~~~~~-~~~~~~--~~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~ 489 (556)
..+.+||+.+.+ ...... ...-.+++.. ++++++.|+.+ ..+.+||+.+. + -..+.........
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE-T-WTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC-c-EEECCCCCCCccc
Confidence 469999998887 222111 1111122222 67777777654 46999998775 2 2222211111111
Q ss_pred EEEeecCCCCcEEEEeeCC-----CcEEEEEcCCCceeee
Q 008717 490 IRSCFGGFEQAFIASGSED-----SQNVPEILLSESVAAA 524 (556)
Q Consensus 490 i~~~~~s~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~ 524 (556)
..++. .++++++.|+.+ ..+.+||+.+.+-...
T Consensus 256 ~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 256 LGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred eEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11222 267777777754 4588899888765443
No 312
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.03 Score=57.16 Aligned_cols=196 Identities=10% Similarity=0.145 Sum_probs=116.6
Q ss_pred CcEEEEEE-------ccCCCEEEEEeCCC-------cEEEEEeecCCee------EEEEEecCCCCCeEEEEeCCCCCE-
Q 008717 273 DEVWFLQF-------SHDGKYLASSSKDQ-------SAIIWEVKEDGQV------SLKHRLSGHRKPVFTVSWSPNDHQ- 331 (556)
Q Consensus 273 ~~V~~~~~-------sp~g~~las~s~dg-------~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~~~~~- 331 (556)
.....++| +++|.+|+.+...+ .|.+++...++.+ ..+..+. ....++.+|++..
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~L 261 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGEL 261 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCCCeE
Confidence 36899999 99999666665443 2556654432222 1222222 2346788995554
Q ss_pred EEEEeCCCcEEEEECC-------CCcE-----------EEE-Eec-CCCceEEEEEecCCCeEEEEe-CCCcEEEEECC-
Q 008717 332 LLTCGQEEAIRRWDVN-------SGEC-----------LHV-YEK-TGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD- 389 (556)
Q Consensus 332 l~s~~~dg~i~iwd~~-------~~~~-----------~~~-~~~-~~~~v~~i~~~~~~~~l~~~~-~dg~i~vwd~~- 389 (556)
+++-..++.|..+|+. ++.. ... +.. .......++|+|+|+.++.+. ..+.|+.++..
T Consensus 262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 4455567889999987 5543 112 222 234467899999999655554 56788886654
Q ss_pred -CCeE---EEeecc--c------------CCCee-EEEEc-------cCCCEEEEEeCCCeEEEEECCCCe-eeeeec--
Q 008717 390 -GREL---ESWKGQ--K------------TLRIS-DMAIT-------DDGKRIISICREAAILLLDREANF-ERWIEE-- 440 (556)
Q Consensus 390 -~~~~---~~~~~~--~------------~~~v~-~v~~s-------~~g~~l~~~~~d~~I~i~d~~~~~-~~~~~~-- 440 (556)
.+.+ ..+... . -.... .++.. ++|.++++-...+.|+.++. ++. .++.+.
T Consensus 342 ~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~ 420 (496)
T 3kya_A 342 IKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGA 420 (496)
T ss_dssp TTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCT
T ss_pred CcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccc
Confidence 3332 122111 0 01344 45554 45666666667788999984 444 333221
Q ss_pred ----------------------CCceEEEEEcCC-CCEEEEEEcCCeEEEEEcCCC
Q 008717 441 ----------------------EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 441 ----------------------~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd~~~~ 473 (556)
-.....++++++ |.++++=..++.|+.+++...
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 123667888886 665555556678888888765
No 313
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.53 E-value=0.011 Score=56.54 Aligned_cols=214 Identities=12% Similarity=0.049 Sum_probs=124.8
Q ss_pred EccCCCEEEEEeC--CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--------------CcEEE
Q 008717 280 FSHDGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------------EAIRR 343 (556)
Q Consensus 280 ~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------------g~i~i 343 (556)
|+.+|.+|+.... ++. ||.+...+.. ...+.. . .+--++++|.+|+-+... ..|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~--ly~~~~dg~~--~~~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGR--LYAMNIDGSN--IHKLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTE--EEEEETTSCS--CEEEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCce--EEEEcCCCCC--CEEccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 3457777776642 344 4444433321 112221 1 133457889988877653 35777
Q ss_pred EECCCCcEEEEEecCCCceEEEEEecCCCeEEEEe----CCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEE
Q 008717 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM----TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (556)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 419 (556)
.++..++... +.... +..|++++++|+-.. .+..|+..++++.....+.... + .+++++++.|+..
T Consensus 93 i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~---~--~~~~~~g~~iy~t 162 (302)
T 3s25_A 93 IKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY---L--FTCNTSDRYFYYN 162 (302)
T ss_dssp EETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC---C--CCSEEETTEEEEE
T ss_pred EeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC---c--eEeeEECCEEEEE
Confidence 7877665333 32221 236788899988776 3456777788876655555443 2 4568889988876
Q ss_pred eC-CCeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCCcceeEEeCccCceeEEEEeecC
Q 008717 420 CR-EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN--QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (556)
Q Consensus 420 ~~-d~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d--g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (556)
+. ...|...++.....+.+. .+... ..++|++.+|+-...+ ..|..-++... ....+... . + .+++
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~-~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~~--~---~--~~~~ 231 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFY-DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTEA--N---I--EHYN 231 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEE-CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSCS--C---E--EEEE
T ss_pred eCCCceEEEEECCCCCEEEEe-CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeCC--C---c--ceEE
Confidence 65 578999998877633332 22332 3466999998877654 35766676654 23334321 1 1 1237
Q ss_pred CCCcEEEEeeC--CCcEEEEEcCCCcee
Q 008717 497 FEQAFIASGSE--DSQNVPEILLSESVA 522 (556)
Q Consensus 497 ~~~~~l~sgs~--dg~v~iwd~~~~~~~ 522 (556)
|++..|+-++. .+.|..-++......
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~~r~ 259 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGTGFK 259 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSCCCE
T ss_pred ECCCEEEEEECCCCcEEEEEECCCCccE
Confidence 78888776532 356666677654433
No 314
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.47 E-value=0.046 Score=52.58 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=116.8
Q ss_pred EEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeC----CC-------cEEEEECCCCcEEEEE
Q 008717 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----EE-------AIRRWDVNSGECLHVY 355 (556)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~ 355 (556)
++.|+. .+.+||..++. ... .................++..++.|+. ++ .+.+||..+++....-
T Consensus 19 ~~~GG~--~~~~yd~~~~~-W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENE-CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEECSS--EEEEEETTTTE-EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhcccc--ceEEECCCCCc-eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 344443 47888887643 322 222221222223333457778888873 12 1778898877643321
Q ss_pred e--cCCCceEEEEEecCCCeEEEEeCC-------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC-----
Q 008717 356 E--KTGVGLISCGWFLDGGGIFAGMTD-------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR----- 421 (556)
Q Consensus 356 ~--~~~~~v~~i~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----- 421 (556)
. ...... +++.. ++..++.|+.+ ..+.+||..+..-..............+...+++.++.|+.
T Consensus 95 ~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 95 PLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred CCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence 1 111111 22222 67777777754 25888999876655443322211112222246667777664
Q ss_pred -CCeEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCCCcceeEEeCccCceeEEEE
Q 008717 422 -EAAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (556)
Q Consensus 422 -d~~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (556)
-..+.+||..+.+ ....... ..-.+++.. +++.++.|+.+ ..+.+||+.+. + -..+...........+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~ 249 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTN-K-WEVMTEFPQERSSISL 249 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTC-C-EEECCCCSSCCBSCEE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCC-e-EEECCCCCCcccceEE
Confidence 2459999999887 3222111 111122222 56777777653 35788998765 2 2222211111111112
Q ss_pred eecCCCCcEEEEeeCC--------------CcEEEEEcCCCceeee
Q 008717 493 CFGGFEQAFIASGSED--------------SQNVPEILLSESVAAA 524 (556)
Q Consensus 493 ~~~s~~~~~l~sgs~d--------------g~v~iwd~~~~~~~~~ 524 (556)
+. .++++++.|+.+ ..+.+||+.+.+-...
T Consensus 250 ~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 250 VS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 22 266777777654 3588899988765544
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.42 E-value=0.041 Score=53.96 Aligned_cols=140 Identities=13% Similarity=0.123 Sum_probs=83.8
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe---cCCCceEEEEEecC---CCeEEEEeC-C-----CcE
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL--HVYE---KTGVGLISCGWFLD---GGGIFAGMT-D-----KSI 383 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~i~~~~~---~~~l~~~~~-d-----g~i 383 (556)
.....++|.|+|+.++ +..+|.|.+++ +++.. ..+. ........++|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3467899999998555 46679999998 45422 1111 12356789999998 556655543 2 578
Q ss_pred EEEECCCCe------EEE-ee--cccCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEECCC---------
Q 008717 384 CLWDLDGRE------LES-WK--GQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREA--------- 432 (556)
Q Consensus 384 ~vwd~~~~~------~~~-~~--~~~~~~v~~v~~s~~g~~l~~~~~-------------d~~I~i~d~~~--------- 432 (556)
..|+..+.. +.. +. .........++|.|||.+.++.+. .+.|.-+|...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 111 21 111124578999999976665432 25677777654
Q ss_pred ----Ce-eeeeecCCceEEEEEcC-CCCEEEEEE
Q 008717 433 ----NF-ERWIEEEEVITSFSLSK-DNKYLLVNL 460 (556)
Q Consensus 433 ----~~-~~~~~~~~~i~~v~~sp-~~~~l~~~~ 460 (556)
.. ..+.........++|+| +|.++++-.
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence 11 11222223467889999 666555543
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.38 E-value=0.0093 Score=56.96 Aligned_cols=186 Identities=10% Similarity=0.015 Sum_probs=102.4
Q ss_pred CCCEEEEEeCC-----CcEEEEEeecCCe--eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCCCc
Q 008717 283 DGKYLASSSKD-----QSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE 350 (556)
Q Consensus 283 ~g~~las~s~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 350 (556)
++..++.|+.+ ..+.+||..+... ......+.........+.+ ++..++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56777777754 4688899876430 3333322222222222333 56777777654 358899998776
Q ss_pred EEEEEe--cCCCceEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-
Q 008717 351 CLHVYE--KTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (556)
Q Consensus 351 ~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d- 422 (556)
....-. ....... ++. .+++.++.|+.+ ..+.+||+.+..-..............+..-++..++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAG-LVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEECCCCCCCcccce-EEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence 443222 1122122 222 267777777654 468999998776555433222122222222356677777654
Q ss_pred ----CeEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008717 423 ----AAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (556)
Q Consensus 423 ----~~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~ 473 (556)
..+.+||+.+.+ ....... ..-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 469999999887 3222111 11112222 266777777655 35788888765
No 317
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.37 E-value=0.012 Score=57.88 Aligned_cols=234 Identities=9% Similarity=0.071 Sum_probs=117.5
Q ss_pred CCCEEEEEeC-CCcEEEEEeec-CCeeEEEEEec-CCCCCeEEEEeCCCCCEEEEEeC-C---------CcEEEEECCCC
Q 008717 283 DGKYLASSSK-DQSAIIWEVKE-DGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQ-E---------EAIRRWDVNSG 349 (556)
Q Consensus 283 ~g~~las~s~-dg~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~-d---------g~i~iwd~~~~ 349 (556)
++..++.|+. ...+.+||..+ ......+..+. .......++.+ ++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666654 34678888763 23333333332 11112222222 5667777765 2 46899999887
Q ss_pred cEEEEEec---CCCceEEEEEecCCCeEEEEeCC---------------------------------------CcEEEEE
Q 008717 350 ECLHVYEK---TGVGLISCGWFLDGGGIFAGMTD---------------------------------------KSICLWD 387 (556)
Q Consensus 350 ~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d---------------------------------------g~i~vwd 387 (556)
+....-.. ...... ++. .+++.++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHV-TFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEE-EEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccce-EEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 64332211 111122 222 477788888754 4789999
Q ss_pred CCCCeEEEeecccCC-Ce-eEEEEccCCCEEEEEeC------CCeEEEEEC--CCCe-eeeeec--C-CceEEEEEcCCC
Q 008717 388 LDGRELESWKGQKTL-RI-SDMAITDDGKRIISICR------EAAILLLDR--EANF-ERWIEE--E-EVITSFSLSKDN 453 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~-~v-~~v~~s~~g~~l~~~~~------d~~I~i~d~--~~~~-~~~~~~--~-~~i~~v~~sp~~ 453 (556)
..+..-......... .- .+++. -+++.++.|+. ...+.+||+ .+.. ...... . ......+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 987654444322211 11 22232 35566666653 345788887 5554 222111 1 111111223356
Q ss_pred CEEEEEEcC----------------------CeEEEEEcCCC-CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCC-
Q 008717 454 KYLLVNLIN----------------------QEIHLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS- 509 (556)
Q Consensus 454 ~~l~~~~~d----------------------g~I~lwd~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg- 509 (556)
++++.|+.+ ..+.+||+.+. ...+..+...... .. ++ ..++++++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~--~~--~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GV--SL--PWNNSLLIIGGETAG 328 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SE--EE--EETTEEEEEEEECGG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-ce--eE--EeCCEEEEEeeeCCC
Confidence 777777632 25788998765 1222222211111 11 11 23778888888653
Q ss_pred -----cEEEEEcCCCceeeeec
Q 008717 510 -----QNVPEILLSESVAAAAS 526 (556)
Q Consensus 510 -----~v~iwd~~~~~~~~~~~ 526 (556)
.|.++++.+++......
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCEeeeEEEEEEcCcEeEeeec
Confidence 46667888888766544
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.37 E-value=0.082 Score=51.57 Aligned_cols=134 Identities=10% Similarity=0.114 Sum_probs=83.8
Q ss_pred CCCcEEEEECCC--CcEE-EEEec-----CCCceEEEEEec--CCC-eEEEEeC---CCcEEEEECC--CCeEE---Eee
Q 008717 337 QEEAIRRWDVNS--GECL-HVYEK-----TGVGLISCGWFL--DGG-GIFAGMT---DKSICLWDLD--GRELE---SWK 397 (556)
Q Consensus 337 ~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~--~~~-~l~~~~~---dg~i~vwd~~--~~~~~---~~~ 397 (556)
.+|.|.++|.++ ++.. ..+.+ .......+.+.+ ++. +|+++.. +..|.+|+++ ++... ...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688999999873 3321 12222 224567788766 354 4555432 4567777764 33322 222
Q ss_pred cccCCCeeEEEEccCCCEEEEEe-----------------CCCeEEEEECCCCe-eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 398 GQKTLRISDMAITDDGKRIISIC-----------------REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 398 ~~~~~~v~~v~~s~~g~~l~~~~-----------------~d~~I~i~d~~~~~-~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
...-...+++++.++|.+.++.. ..|.|.-||.. + ......-...+.++||||++.|+++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence 33334689999999998777654 12456666653 3 3333444567899999999888777
Q ss_pred E-cCCeEEEEEcCC
Q 008717 460 L-INQEIHLWSIES 472 (556)
Q Consensus 460 ~-~dg~I~lwd~~~ 472 (556)
. ..+.|..|++..
T Consensus 239 dt~~~~I~~~~~~~ 252 (355)
T 3sre_A 239 ELLAHKIHVYEKHA 252 (355)
T ss_dssp EGGGTEEEEEEECT
T ss_pred eCCCCeEEEEEECC
Confidence 5 467899999864
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.28 E-value=0.019 Score=54.97 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=103.0
Q ss_pred CCCEEEEEeCC----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC------CcEEEEECCCCcEE
Q 008717 283 DGKYLASSSKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDVNSGECL 352 (556)
Q Consensus 283 ~g~~las~s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~ 352 (556)
++..++.|+.+ ..+.+||..++ .......+.........+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 66677777754 56888888754 33333333322222223333 66777777765 46899999887644
Q ss_pred EEEec--CCCceEEEEEecCCCeEEEEeC---------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 353 HVYEK--TGVGLISCGWFLDGGGIFAGMT---------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 353 ~~~~~--~~~~v~~i~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
..-.. ...... ++. .++..++.|+. -..+.+||+.+..-..............+..-+++.++.|+.
T Consensus 132 ~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 209 (306)
T 3ii7_A 132 TKPSMLTQRCSHG-MVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQ 209 (306)
T ss_dssp EECCCSSCCBSCE-EEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred eCCCCcCCcceeE-EEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCC
Confidence 33211 111112 222 26666777653 345889999887655544322222222222236667777664
Q ss_pred C-----CeEEEEECCCCe-eeeeecC---CceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008717 422 E-----AAILLLDREANF-ERWIEEE---EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (556)
Q Consensus 422 d-----~~I~i~d~~~~~-~~~~~~~---~~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~ 473 (556)
+ ..+.+||+.+.+ ....... .....+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 468999999887 2222111 11222333 67777888754 46888888765
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.26 E-value=0.012 Score=56.26 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=100.4
Q ss_pred CCCEEEEEeCC-----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC-----cEEEEECCCCcEE
Q 008717 283 DGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGECL 352 (556)
Q Consensus 283 ~g~~las~s~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 352 (556)
++..++.|+.+ ..+.+||..+. .......+.........+.+ ++..++.|+.++ .+.+||+.+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCC-ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 66777777654 35788888754 33333332222222222333 567777777653 5788998877644
Q ss_pred EEEe--cCCCceEEEEEecCCCeEEEEeCC-------CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCC-
Q 008717 353 HVYE--KTGVGLISCGWFLDGGGIFAGMTD-------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (556)
Q Consensus 353 ~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d- 422 (556)
..-. ...... +++. -++..++.|+.+ ..+.+||+.+..-..........-...+..-++..++.|+.+
T Consensus 138 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 138 HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG 215 (302)
T ss_dssp EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSS
T ss_pred ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCC
Confidence 3321 111111 2222 266677776542 358899998766554433222111112222356777777654
Q ss_pred ----CeEEEEECCCCe-eeeeecCC--ceEEEEEcCCCCEEEEEEcCC-----eEEEEEcCCC
Q 008717 423 ----AAILLLDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLINQ-----EIHLWSIESD 473 (556)
Q Consensus 423 ----~~I~i~d~~~~~-~~~~~~~~--~i~~v~~sp~~~~l~~~~~dg-----~I~lwd~~~~ 473 (556)
..+.+||..+.+ ........ .-.+++. -+++.++.|+.++ .+.+||+.+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 469999999887 32222111 1112222 2677777777553 4888888765
No 321
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.23 E-value=0.0003 Score=52.07 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHH
Q 008717 63 KSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESII 116 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~ 116 (556)
++|+++-|++||..+||.+++.+|.+|.+++.+..... -..-+++-+|..++.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~-ky~gLLEKKWTSViR 62 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK-KYAGLLEKKWTSVIR 62 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH-HHTTHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhh-hhhhhhhhhHHHHHH
Confidence 67999999999999999999999999999988744332 355577788866554
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.22 E-value=0.065 Score=52.54 Aligned_cols=140 Identities=12% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe---cCCCceEEEEEecC---CCeEEEEeC----C----Cc
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CLHVYE---KTGVGLISCGWFLD---GGGIFAGMT----D----KS 382 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~~~~~----d----g~ 382 (556)
.....++|.|+|+. +.+..+|.|++++ .+++ .+..+. ........++++|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45678999999974 4456679999997 4554 222211 12356789999997 555655443 2 56
Q ss_pred EEEEECCCC--e---EEE----eecccCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEECCCC-------
Q 008717 383 ICLWDLDGR--E---LES----WKGQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN------- 433 (556)
Q Consensus 383 i~vwd~~~~--~---~~~----~~~~~~~~v~~v~~s~~g~~l~~~~~-------------d~~I~i~d~~~~------- 433 (556)
|..|+..+. . ... +..........++|.|||.++++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887643 1 111 22111224678999999986666432 246766666543
Q ss_pred -e-eeeeecCCceEEEEEcC-CCCEEEEE
Q 008717 434 -F-ERWIEEEEVITSFSLSK-DNKYLLVN 459 (556)
Q Consensus 434 -~-~~~~~~~~~i~~v~~sp-~~~~l~~~ 459 (556)
. ..+.........++|+| +|+++++-
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEe
Confidence 1 11212223456899999 66655543
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.05 E-value=0.064 Score=52.99 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=96.9
Q ss_pred EccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC--CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc-------
Q 008717 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE------- 350 (556)
Q Consensus 280 ~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------- 350 (556)
.+.+|..++.+- ++.||.-++..+..++.++. .. .-..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~-~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNF-SRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEEC-TTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEec-CcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 345677676663 57888888775444433332 21 1236788999999999998865 478888876321
Q ss_pred -----EEEEEec------CCCceEEEEEec---CCCeEEEEeCCCcEEEEECCC-C-eEEEeec--------ccCCCeeE
Q 008717 351 -----CLHVYEK------TGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDG-R-ELESWKG--------QKTLRISD 406 (556)
Q Consensus 351 -----~~~~~~~------~~~~v~~i~~~~---~~~~l~~~~~dg~i~vwd~~~-~-~~~~~~~--------~~~~~v~~ 406 (556)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+.. . ....+.. .....|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1233432 256799999999 467899999999999999964 1 1111111 11136889
Q ss_pred EEEccCCCEEEEEe--CCCeEEEE
Q 008717 407 MAITDDGKRIISIC--REAAILLL 428 (556)
Q Consensus 407 v~~s~~g~~l~~~~--~d~~I~i~ 428 (556)
++|.+++-.|...+ .+|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999887777655 77887654
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.03 E-value=0.46 Score=51.71 Aligned_cols=231 Identities=8% Similarity=0.042 Sum_probs=132.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe-cCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCc
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (556)
.+.|.++.-..+|. |-.|+.+| +..||-. ........ ......|.++.-..++ .|..|+.+| +..||..+.+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~---~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGY---STQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSS---CEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCC---ceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 45789998888875 44556676 4455522 11111000 1123468888777666 455555555 7899988765
Q ss_pred EEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeec----ccCCCeeEEEEccCCCEEEEEeCCCeEE
Q 008717 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG----QKTLRISDMAITDDGKRIISICREAAIL 426 (556)
Q Consensus 351 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v~~s~~g~~l~~~~~d~~I~ 426 (556)
...........|.++.. .++ .+..++.+ -+..+|..++.+..+.. .....|.++...++|...+ ++. +-|.
T Consensus 94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~ 168 (758)
T 3ott_A 94 YEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLC 168 (758)
T ss_dssp ECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEE
T ss_pred EECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHh
Confidence 33211112234666654 344 56677766 58889988776655421 1223688888888887655 444 4588
Q ss_pred EEECCCCeeeeeec-------CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCC
Q 008717 427 LLDREANFERWIEE-------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (556)
Q Consensus 427 i~d~~~~~~~~~~~-------~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (556)
.||..+........ ...|.++...+++..|.+|+. +.+..+|..++ + +..+..... ..+...+...+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l~~--~~i~~i~~d~~g 243 (758)
T 3ott_A 169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAFHN--NSIKSLALDGNG 243 (758)
T ss_dssp EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-E-EEEEEEEEE--EEEEEEEECTTC
T ss_pred hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-e-EEeccCCCC--CeEEEEEEcCCC
Confidence 89987776222211 224888888887776666664 46888997765 3 222221111 123333325566
Q ss_pred cEEEEeeCCCcEEEEEcCCCce
Q 008717 500 AFIASGSEDSQNVPEILLSESV 521 (556)
Q Consensus 500 ~~l~sgs~dg~v~iwd~~~~~~ 521 (556)
.+. .|+.+ -+.+++..++..
T Consensus 244 ~lW-igT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 244 DLL-AGTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp CEE-EEETT-EEEEECCTTSCC
T ss_pred CEE-EEeCC-ceeEEecCCCcE
Confidence 654 45544 578888776554
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.01 E-value=0.74 Score=52.44 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=136.5
Q ss_pred CCcEEEEEEccC------CCEEEEEeC-CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeC--CCCCEEEEEeCCCcEE
Q 008717 272 SDEVWFLQFSHD------GKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS--PNDHQLLTCGQEEAIR 342 (556)
Q Consensus 272 ~~~V~~~~~sp~------g~~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~ 342 (556)
.+.|.|+++.|. +.++|.|.. |++++|+++.+-... ....+.. .....++.+. ....+|..|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 468999999873 368999986 999999999753222 2233322 1233333332 2345788888999876
Q ss_pred EEEC--CCCcEEEE--EecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecccCCCee-EEEEccC--CCE
Q 008717 343 RWDV--NSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS-DMAITDD--GKR 415 (556)
Q Consensus 343 iwd~--~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~v~~s~~--g~~ 415 (556)
.+.+ .+|..... ..-...++.=..+...+..-+.+..+....++.-+++ +. +.......+. ...|+.. ..-
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~-~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LV-FSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS-EE-EEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eE-EeccChHHhceEeccCcccCCCc
Confidence 5554 45554322 1112334444444444444444444455555544433 22 1111111333 3344332 133
Q ss_pred EEEEeCCCeEEEEECCCCe---eeeeecCCceEEEEEcCCCCEEEEEEcC------------------------------
Q 008717 416 IISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLIN------------------------------ 462 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~---~~~~~~~~~i~~v~~sp~~~~l~~~~~d------------------------------ 462 (556)
++..+ ++.++|..+.... .+.+.....+..++++|+.+.++++..+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 55443 4568888875433 5556677888999999987766554321
Q ss_pred -------------------CeEEEEEcCCCCcceeEEeCccC-ceeEEEEeecCC-CCcEEEEee----------CCCcE
Q 008717 463 -------------------QEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFGGF-EQAFIASGS----------EDSQN 511 (556)
Q Consensus 463 -------------------g~I~lwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s~-~~~~l~sgs----------~dg~v 511 (556)
+.|++.|-.+. +.+..+.-... .+.++..+.+.. ...+++.|+ ..|.|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 23677776665 55555543222 233333333232 357888886 35789
Q ss_pred EEEEcCCCceee
Q 008717 512 VPEILLSESVAA 523 (556)
Q Consensus 512 ~iwd~~~~~~~~ 523 (556)
+++++.++++..
T Consensus 867 ~vf~v~~~kL~l 878 (1158)
T 3ei3_A 867 VVFQYSDGKLQT 878 (1158)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEECCEEEE
Confidence 999987655543
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.96 E-value=0.032 Score=53.58 Aligned_cols=189 Identities=12% Similarity=0.012 Sum_probs=98.7
Q ss_pred EEccCCCEEEEEeC----C-------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC--------C
Q 008717 279 QFSHDGKYLASSSK----D-------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------E 339 (556)
Q Consensus 279 ~~sp~g~~las~s~----d-------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------g 339 (556)
+...++..++.|+. + ..+.+||..+. ....+..+.........+.+ ++..++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 33457777777773 1 12667777653 22222222211111122222 56666777632 4
Q ss_pred cEEEEECCCCcEEEEEe--cCCCceEEEEEecCCCeEEEEeC-C-----CcEEEEECCCCeEEEeecccCCCeeEEEEcc
Q 008717 340 AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMT-D-----KSICLWDLDGRELESWKGQKTLRISDMAITD 411 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~ 411 (556)
.+.+||..+++-...-. ...... +++. .+++.++.|+. + ..+.+||+.+..-..............+..-
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 195 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH 195 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred eEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence 58999998876432211 111111 2222 36677777775 2 3689999987665444332222222222233
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCe-eeeeecC--CceEEEEEcCCCCEEEEEEcCC--------------eEEEEE
Q 008717 412 DGKRIISICREA-----AILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLINQ--------------EIHLWS 469 (556)
Q Consensus 412 ~g~~l~~~~~d~-----~I~i~d~~~~~-~~~~~~~--~~i~~v~~sp~~~~l~~~~~dg--------------~I~lwd 469 (556)
+++.++.|+.++ .+.+||+.+.+ ....... ..-.+++.. ++++++.|+.++ .+.+||
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEec
Confidence 667777777654 58999999887 3222211 111122222 567777776532 367788
Q ss_pred cCCC
Q 008717 470 IESD 473 (556)
Q Consensus 470 ~~~~ 473 (556)
+.+.
T Consensus 275 ~~~~ 278 (315)
T 4asc_A 275 EEEK 278 (315)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7664
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.94 E-value=0.27 Score=55.98 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=106.7
Q ss_pred cEEEEECCCCcEEEEEecC-CCceEEEEEe---cC-CCeEEEEe----------CCCcEEEEECCCCeEEEeec-ccCCC
Q 008717 340 AIRRWDVNSGECLHVYEKT-GVGLISCGWF---LD-GGGIFAGM----------TDKSICLWDLDGRELESWKG-QKTLR 403 (556)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~---~~-~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~-~~~~~ 403 (556)
.|++.|..+.+.+..++-. ...+.+++.- .+ ..++++|+ ..|.|.+|++..+++..... .-.+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 4777787777776666533 3334555432 22 46788876 34789999987655544332 22347
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEECCCCe-eee-eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 404 ISDMAITDDGKRIISICREAAILLLDREANF-ERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-~~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
|++++-- +| +|+++ ...+|++|++...+ ... ...-..|..+.....++++++|..-..|.++..+.....+..+.
T Consensus 888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 8887744 34 45544 35789999998765 221 11112233333434578999998877777765543324455555
Q ss_pred CccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.+..+.++..+.+. +...++.+..+|.|.+.....
T Consensus 965 ~D~~~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 965 RDFNPNWMSAVEIL--DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ECCSCBCEEEEEEE--ETTEEEEEETTSEEEEEEECT
T ss_pred eecccccEEEEEEE--ccCcEEEEcCCCcEEEEecCC
Confidence 55556666666664 334677899999999997765
No 328
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.93 E-value=0.29 Score=46.57 Aligned_cols=177 Identities=9% Similarity=0.041 Sum_probs=107.1
Q ss_pred EEEEccCCCEEEEEeCCC--------------cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEe--C--C
Q 008717 277 FLQFSHDGKYLASSSKDQ--------------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG--Q--E 338 (556)
Q Consensus 277 ~~~~sp~g~~las~s~dg--------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~--d 338 (556)
+--++++|.+|+.+.... .|+..++..... ..+.. .. +..|++++++|+-.. . +
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~----~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS----TVLDP--DP--CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC----EEEEC--SC--EEEEEEETTEEEEEEESSSSC
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc----eEeec--CC--ccEEEEeCCEEEEEeecCCCC
Confidence 345688999998876432 445555543321 11221 11 236778899998776 2 3
Q ss_pred CcEEEEECCCCcEEEEEecCCCceEEEEEecCCCeEEEEeC-CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
..|...+++... ...+..+.. ..|+|+++.|+-.+. ...|...++.++....+... ... ..+.|++.+|+
T Consensus 129 ~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 129 TSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVY 199 (302)
T ss_dssp EEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEE
T ss_pred ceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEE
Confidence 456666765433 344443332 356778888887765 57899999988766555432 222 34669999888
Q ss_pred EEeCC--CeEEEEECCCCeeeeeecCCceEEEEEcCCCCEEEEEEc--CCeEEEEEcCCC
Q 008717 418 SICRE--AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI--NQEIHLWSIESD 473 (556)
Q Consensus 418 ~~~~d--~~I~i~d~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~--dg~I~lwd~~~~ 473 (556)
....+ ..|..-++.......+. ...+ ..|+|++.+|..+.. .+.|...++...
T Consensus 200 ~t~~~~~~~I~~~~ldG~~~~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 200 YMDVNRDNAIVHVNINNPNPVVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEGGGTTEEEEECSSSCCCEECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEcCCCcEEEEEECCCCCeEEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 76644 36777777766633322 2233 348888998887643 356777776543
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.082 Score=52.22 Aligned_cols=142 Identities=10% Similarity=0.081 Sum_probs=89.3
Q ss_pred cCCCeEEEEeCCCcEEEEECC-CCeEEEeecc---cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe---e------
Q 008717 369 LDGGGIFAGMTDKSICLWDLD-GRELESWKGQ---KTLRISDMAITDDGKRIISICREAAILLLDREANF---E------ 435 (556)
Q Consensus 369 ~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~---~------ 435 (556)
.+|..++++-. +.||.-++. ....+.+... ....|..+..+|+|++++..+ +..|.|..+..+. .
T Consensus 30 ~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 35666666543 678877876 3333333332 122688899999999998875 4589998887332 1
Q ss_pred -----eee-e-----cCCceEEEEEcCC---CCEEEEEEcCCeEEEEEcCCC-CcceeEEeCccC-------ceeEEEEe
Q 008717 436 -----RWI-E-----EEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKR-------ARFVIRSC 493 (556)
Q Consensus 436 -----~~~-~-----~~~~i~~v~~sp~---~~~l~~~~~dg~I~lwd~~~~-~~~~~~~~~~~~-------~~~~i~~~ 493 (556)
.+. + ...+|..+.|+|- +..|++-..|+.|++||+... .++. .+..... ...+..+|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 111 1 2467999999994 568999999999999999753 1222 3321111 12234567
Q ss_pred ecCCCCcEEEEee--CCCcEEEE
Q 008717 494 FGGFEQAFIASGS--EDSQNVPE 514 (556)
Q Consensus 494 ~~s~~~~~l~sgs--~dg~v~iw 514 (556)
| +.++-.|+..+ +.|.||-.
T Consensus 187 F-g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 F-SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp E-CTTSSCEEEEECTTSCEEEEE
T ss_pred E-cCCCcEEEEEecCCCCCEEEE
Confidence 7 55666566544 77776653
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.79 E-value=0.029 Score=53.72 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=98.8
Q ss_pred CCCEEEEEeC----C-----CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEECCC
Q 008717 283 DGKYLASSSK----D-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNS 348 (556)
Q Consensus 283 ~g~~las~s~----d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~ 348 (556)
++..++.|+. + ..+.+||..+. .......+.........+.+ +++.++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTT-EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCC-eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666677665 2 45788887754 33332222222222222333 56677777643 3688999987
Q ss_pred CcEEEEEe--cCCCceEEEEEecCCCeEEEEeCC-----CcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeC
Q 008717 349 GECLHVYE--KTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 349 ~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 421 (556)
.+....-. ........+.+ ++..++.|+.+ ..+.+||+.+..-..............+..-++..++.|+.
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 224 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY 224 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCC
Confidence 76433211 11111222222 66777777654 46899999876654443322211111122226667777765
Q ss_pred C-----CeEEEEECCCCe-eeeeecCC--ceEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008717 422 E-----AAILLLDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (556)
Q Consensus 422 d-----~~I~i~d~~~~~-~~~~~~~~--~i~~v~~sp~~~~l~~~~~d-----g~I~lwd~~~~ 473 (556)
+ ..+.+||+.+.+ ........ .-.+++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 4 569999999887 32221111 11122222 56777777654 35778887764
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.78 E-value=0.39 Score=45.71 Aligned_cols=222 Identities=7% Similarity=0.114 Sum_probs=135.1
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 372 (556)
+.+|.|.|+..+... .+.-..- -+...+|..+.||.-. ..++.|+|+++.+.++.+.-.. .|.-=.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~--~Rrpi~A----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNP--IRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSC--EEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCc--ccccccc----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecC-CC
Confidence 347888888865432 2222222 2344588888777655 6789999999999888887544 566666763 44
Q ss_pred eEEEEeCCCcEEEEECCC--CeEEEeecc---cCCCeeEEEEccCCCEEEEEeC-------CCeEEEEECCCCe-eeeee
Q 008717 373 GIFAGMTDKSICLWDLDG--RELESWKGQ---KTLRISDMAITDDGKRIISICR-------EAAILLLDREANF-ERWIE 439 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~~-------d~~I~i~d~~~~~-~~~~~ 439 (556)
.|+..+. ..|+.|++.+ ...+.+..+ ....|..-..+++.++++..+- .|.+.+|..+.+. ..+.+
T Consensus 119 ~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 197 (365)
T 2xzh_A 119 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 197 (365)
T ss_dssp EEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred eEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee
Confidence 5555443 5799999974 222222221 1236788888999998775542 3678899998887 44455
Q ss_pred cCCceEEEEEcCC---CCEEEEEEcC---CeEEEEEcCCC--Cc------ceeEE-eCccCceeEEEEeecCCCCcEEEE
Q 008717 440 EEEVITSFSLSKD---NKYLLVNLIN---QEIHLWSIESD--PK------LVSRY-KGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 440 ~~~~i~~v~~sp~---~~~l~~~~~d---g~I~lwd~~~~--~~------~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
|......+.+..+ ...++.+... +.++|.++... +. .+..+ .......+-+.... ++.-..++.
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv-s~kygviyv 276 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 276 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe-cccCCEEEE
Confidence 5444433333211 1234444332 58999998442 01 11111 11112223344444 566678888
Q ss_pred eeCCCcEEEEEcCCCceeeee
Q 008717 505 GSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~~~ 525 (556)
-+.-|.|++||+.++..+...
T Consensus 277 iTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEE
T ss_pred EeCCcEEEEEEcccCcEEEEe
Confidence 999999999999999886544
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.76 E-value=0.074 Score=51.09 Aligned_cols=189 Identities=11% Similarity=0.024 Sum_probs=95.7
Q ss_pred EccCCCEEEEEeC----CC-------cEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCC-------CcE
Q 008717 280 FSHDGKYLASSSK----DQ-------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-------EAI 341 (556)
Q Consensus 280 ~sp~g~~las~s~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-------g~i 341 (556)
...++..++.|+. ++ .+.+||..+. .......+.........+.+ ++..++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 4457777777773 12 1667777643 33222222221122222222 56677777754 258
Q ss_pred EEEECCCCcEEEEEecCCCce-EEEEEecCCCeEEEEeC------CCcEEEEECCCCeEEEeecccCCCeeEEEEccCCC
Q 008717 342 RRWDVNSGECLHVYEKTGVGL-ISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
.+||..+.+-...-....... .+++. .++..++.|+. ...+.+||+.+..-..............+..-+++
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 208 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK 208 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCE
Confidence 889988776443221111111 11222 36777777764 23589999988765544332221221112223567
Q ss_pred EEEEEeCC-----CeEEEEECCCCe-eeeeecCC--ceEEEEEcCCCCEEEEEEcC--------------CeEEEEEcCC
Q 008717 415 RIISICRE-----AAILLLDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLIN--------------QEIHLWSIES 472 (556)
Q Consensus 415 ~l~~~~~d-----~~I~i~d~~~~~-~~~~~~~~--~i~~v~~sp~~~~l~~~~~d--------------g~I~lwd~~~ 472 (556)
.++.|+.+ ..+.+||+.+.+ ........ .-.+++. -++++++.|+.+ ..+.+||+.+
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 77777643 357899998877 22221111 1112222 256667776643 3466777765
Q ss_pred C
Q 008717 473 D 473 (556)
Q Consensus 473 ~ 473 (556)
.
T Consensus 288 ~ 288 (318)
T 2woz_A 288 K 288 (318)
T ss_dssp T
T ss_pred C
Confidence 4
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.61 E-value=0.091 Score=46.98 Aligned_cols=104 Identities=7% Similarity=-0.072 Sum_probs=67.8
Q ss_pred CceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeecc-------cCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-------KTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 360 ~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
..+..++|+|+|...++ .+|.++-.+..+..-..+... .-....++.|.|+|.+.++ .||.|+-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 35779999999886666 667777777644222222221 1112478999999987777 569998888644
Q ss_pred Ce-------eeeeec--CCceEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008717 433 NF-------ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (556)
Q Consensus 433 ~~-------~~~~~~--~~~i~~v~~sp~~~~l~~~~~dg~I~lwd 469 (556)
.. ...++. -..+..+.+.|+|.+.++. |+.++-+.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 32 122221 2468999999999877776 77765443
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.55 E-value=0.71 Score=45.72 Aligned_cols=222 Identities=8% Similarity=0.150 Sum_probs=137.2
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 372 (556)
+..|.|.|+.++... ..+... --+...+|..+.||.-. ..++.|+|+++.+.++.+.-.. +|.-=.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~-~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP-IRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSC-EEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcc-eecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-C
Confidence 347888888865442 112221 12445688777776654 6799999999999888887554 4555566643 4
Q ss_pred eEEEEeCCCcEEEEECCC--CeEEEeeccc---CCCeeEEEEccCCCEEEEEeC-------CCeEEEEECCCCe-eeeee
Q 008717 373 GIFAGMTDKSICLWDLDG--RELESWKGQK---TLRISDMAITDDGKRIISICR-------EAAILLLDREANF-ERWIE 439 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~~---~~~v~~v~~s~~g~~l~~~~~-------d~~I~i~d~~~~~-~~~~~ 439 (556)
.|+..+ +..|+.|++.+ ...+.+..+. ...|..-..+++.+|++..+- .|.+.+|..+.+. ..+.+
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 196 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence 555444 36799999964 2333332221 236888888999998775442 3678899998877 55555
Q ss_pred cCCceEEEEEcCCC---CEEEEEEcC---CeEEEEEcCCCC--c-c-----eeEE-eCccCceeEEEEeecCCCCcEEEE
Q 008717 440 EEEVITSFSLSKDN---KYLLVNLIN---QEIHLWSIESDP--K-L-----VSRY-KGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 440 ~~~~i~~v~~sp~~---~~l~~~~~d---g~I~lwd~~~~~--~-~-----~~~~-~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
|.....++.+..+. ..++.+... +.++|.++.... . . +..+ .......+-+.... ++.-..++.
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-s~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-cccCCEEEE
Confidence 65554444433211 234444432 789999985420 1 1 1111 11111223344444 666778889
Q ss_pred eeCCCcEEEEEcCCCceeeee
Q 008717 505 GSEDSQNVPEILLSESVAAAA 525 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~~~ 525 (556)
.+.-|.|++||+.++..+...
T Consensus 276 iTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEE
T ss_pred EecCceEEEEecccceeeeee
Confidence 999999999999999886544
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.51 E-value=0.66 Score=44.94 Aligned_cols=207 Identities=12% Similarity=0.074 Sum_probs=114.1
Q ss_pred eeEEecccCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEe----cCCCCCeEEEEeCCC---CCEEEEE-
Q 008717 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----SGHRKPVFTVSWSPN---DHQLLTC- 335 (556)
Q Consensus 264 ~~~~l~~h~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s~- 335 (556)
.+.++-..-...+.++|.|||.++++--..|.|++++..++ ....+..+ .........++++|+ +.+|+..
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g-~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG-RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC-cEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 44455555667899999999997777655899988875433 22233322 223456889999995 4445443
Q ss_pred --eCCCcEEEEECCCC----------cEE-EEEec-CCCceEEEEEecCCCeEEEEeC-------------CCcEEEEEC
Q 008717 336 --GQEEAIRRWDVNSG----------ECL-HVYEK-TGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDL 388 (556)
Q Consensus 336 --~~dg~i~iwd~~~~----------~~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~-------------dg~i~vwd~ 388 (556)
..++.|.-|....+ +.+ ..+.. .......+.|.|||.+.++.+. .|.|.-.+.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 23456666766541 111 11221 1223456899999987777542 356666666
Q ss_pred CCC--------eEEEeecccCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe-------------------eeeeec
Q 008717 389 DGR--------ELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-------------------ERWIEE 440 (556)
Q Consensus 389 ~~~--------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~-------------------~~~~~~ 440 (556)
++. ....+...+. ....++|+|+|.++++-. .++.=.|.-+..+. .....+
T Consensus 182 dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~ 260 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST 260 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred CCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence 543 1122222332 578899999887655432 22222222222221 000111
Q ss_pred C-CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 441 E-EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 441 ~-~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
. .....++|. +|..++.....+.|....+...
T Consensus 261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 1 345667776 4555555555566666666543
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.50 E-value=0.27 Score=49.88 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE--EEec------CCCceEEEEEecC---CCeEEEEeC-------
Q 008717 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH--VYEK------TGVGLISCGWFLD---GGGIFAGMT------- 379 (556)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~i~~~~~---~~~l~~~~~------- 379 (556)
.....++|.|+|+.+++-...+.|++++..+++... .+.. ....+..++|+|+ +..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 346799999999877765444578888876565432 2221 2356779999995 555555442
Q ss_pred ------CCcEEEEECCC--Ce------EEE-eecccCCCeeEEEEccCCCEEEEEe
Q 008717 380 ------DKSICLWDLDG--RE------LES-WKGQKTLRISDMAITDDGKRIISIC 420 (556)
Q Consensus 380 ------dg~i~vwd~~~--~~------~~~-~~~~~~~~v~~v~~s~~g~~l~~~~ 420 (556)
...|.-|+... .. +.. +.....+....|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666532 11 111 1112223689999999998777654
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.42 E-value=0.96 Score=45.75 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=85.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecC------CCCCeEEEEeCCC---CCEEEEEeC-----
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG------HRKPVFTVSWSPN---DHQLLTCGQ----- 337 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~----- 337 (556)
-...+.++|.|+|+++++-...+.|++++..++ ....+..+.. .......|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 446789999999997776544456877765433 3333333321 2456779999995 555554432
Q ss_pred --------CCcEEEEECCCC--c-----EEE-EEec-CCCceEEEEEecCCCeEEEEeCC--------------------
Q 008717 338 --------EEAIRRWDVNSG--E-----CLH-VYEK-TGVGLISCGWFLDGGGIFAGMTD-------------------- 380 (556)
Q Consensus 338 --------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~i~~~~~~~~l~~~~~d-------------------- 380 (556)
...|..++...+ + .+. .+.. .......++|.|||.+.++.+..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccc
Confidence 134666665332 1 111 1221 12346889999999877775431
Q ss_pred ------------CcEEEEECCCC-----------eEEEeecccCCCeeEEEEccCCCEEEE
Q 008717 381 ------------KSICLWDLDGR-----------ELESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 381 ------------g~i~vwd~~~~-----------~~~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
|.|.-++.++. ....+...+. .+..++|+|+|.++++
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~ 244 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQS 244 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEE
T ss_pred ccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEE
Confidence 44555555543 2223333332 6889999998876554
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.41 E-value=0.58 Score=47.77 Aligned_cols=227 Identities=13% Similarity=0.113 Sum_probs=136.6
Q ss_pred EEEEeCCCcEEEEEeecCCeeEEEEEecCC----------------------CCCeE--EEEeC---CCCCEEEEEeC-C
Q 008717 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGH----------------------RKPVF--TVSWS---PNDHQLLTCGQ-E 338 (556)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h----------------------~~~v~--~l~~s---~~~~~l~s~~~-d 338 (556)
+.+|+..|.|+|+-+.+...+..+-.|... .+... .+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 667888999999999876433322222110 01111 22222 16778877764 5
Q ss_pred CcEEEEECCCCcEEEEEecC-CCceEEEEEe--cCCCeEEEEeC-------CCcE---------EE---EECCCCeEEEe
Q 008717 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWF--LDGGGIFAGMT-------DKSI---------CL---WDLDGRELESW 396 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~l~~~~~-------dg~i---------~v---wd~~~~~~~~~ 396 (556)
..|-..+++.-++-+.++-. ...+..+.|- |+..+++.++. ||.. .+ .|..+.++. |
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~-~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA-F 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE-E
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE-E
Confidence 67888899888887766543 5567888886 67888888764 3331 11 122222221 1
Q ss_pred ecccCCCeeEEEEccCCCEEEEEeCC--------------------------------------C--eEEEEECCC----
Q 008717 397 KGQKTLRISDMAITDDGKRIISICRE--------------------------------------A--AILLLDREA---- 432 (556)
Q Consensus 397 ~~~~~~~v~~v~~s~~g~~l~~~~~d--------------------------------------~--~I~i~d~~~---- 432 (556)
.-.-.+....+...++|.+.++.|.+ + .|.+.|.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 10011234455667788887777653 2 456666655
Q ss_pred Ce--eeeeecCCceEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCC-----cc-------eeEEeCccCceeEEEEeecCC
Q 008717 433 NF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP-----KL-------VSRYKGHKRARFVIRSCFGGF 497 (556)
Q Consensus 433 ~~--~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~I~lwd~~~~~-----~~-------~~~~~~~~~~~~~i~~~~~s~ 497 (556)
+. ..++........+.++|||+++++++. +.++.++|++.-. +. +.......++ +...| .+
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP---lHt~F-d~ 387 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP---LHTTF-DG 387 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE---EEEEE-CS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc---cEEEE-CC
Confidence 22 455555666778999999999988775 6789999987420 11 2222222233 55677 88
Q ss_pred CCcEEEEeeCCCcEEEEEcCC
Q 008717 498 EQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 498 ~~~~l~sgs~dg~v~iwd~~~ 518 (556)
+|....|---|..|.-|++..
T Consensus 388 ~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHH
T ss_pred CCceEeeeeecceEEEEeccH
Confidence 885555555799999999875
No 339
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.39 E-value=0.37 Score=46.70 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=87.0
Q ss_pred CCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEE--E----ecCCCceEEEEEecC---CCeEEEE---eCCCc
Q 008717 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--Y----EKTGVGLISCGWFLD---GGGIFAG---MTDKS 382 (556)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~~~~~v~~i~~~~~---~~~l~~~---~~dg~ 382 (556)
..-.....++|.|||..+++--..|.|++++..+++.... + .........++++|+ +..|++. ..++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3345578999999998777655589999998766654221 1 123556889999995 4445443 23456
Q ss_pred EEEEECCCC----------e-EE-EeecccCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEECCCC----
Q 008717 383 ICLWDLDGR----------E-LE-SWKGQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN---- 433 (556)
Q Consensus 383 i~vwd~~~~----------~-~~-~~~~~~~~~v~~v~~s~~g~~l~~~~~-------------d~~I~i~d~~~~---- 433 (556)
|.-|..... + +. .+.....+....++|.|||.+.++.+. .|.|.-++....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666766431 1 11 121112225678999999987776542 355665665543
Q ss_pred ----e-eeeeecCCceEEEEEcCCCCEEEEE
Q 008717 434 ----F-ERWIEEEEVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 434 ----~-~~~~~~~~~i~~v~~sp~~~~l~~~ 459 (556)
. ..+.........++|+|+|.+.++-
T Consensus 189 nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 1 1122122346689999988765543
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.34 E-value=0.14 Score=45.85 Aligned_cols=139 Identities=6% Similarity=-0.137 Sum_probs=82.8
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC------LHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~ 391 (556)
.+..++|+|+|.+.+. .+|.+.-.+..++.. -..+-. .-....++.|.|+|.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6779999999886665 677776666644211 111111 1112467889999988777 5599988876321
Q ss_pred eE-------EEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe-------eeeee--cCCceEEEEEcCCCCE
Q 008717 392 EL-------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-------ERWIE--EEEVITSFSLSKDNKY 455 (556)
Q Consensus 392 ~~-------~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-------~~~~~--~~~~i~~v~~sp~~~~ 455 (556)
.- ..+-...-..+..+.+.|+|.+.++. |+.++-....+.. ..... .-...+.+.|++++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 11 11111122368999999999877766 7775443333211 22222 2223455778999887
Q ss_pred EEEEEcCCeE
Q 008717 456 LLVNLINQEI 465 (556)
Q Consensus 456 l~~~~~dg~I 465 (556)
.++. ++.+
T Consensus 196 ~~v~--~g~~ 203 (236)
T 1tl2_A 196 FGVQ--GGKF 203 (236)
T ss_dssp EEEE--TTEE
T ss_pred EEEe--CCeE
Confidence 7766 6643
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.29 E-value=0.15 Score=58.01 Aligned_cols=235 Identities=10% Similarity=0.184 Sum_probs=141.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEe
Q 008717 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVYE 356 (556)
Q Consensus 278 ~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 356 (556)
.-.+|..+.||.-. ..++.|+|+.+..++ +.+. .+.+|..-.|-.+. .|+..+ +..|.-|++.. ..+++.|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~kl---ks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhh---cccc-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 44677777777654 679999999876332 3332 24567777886443 333333 35899999964 34445555
Q ss_pred cC----CCceEEEEEecCCCeEEEEe-------CCCcEEEEECCCCeEEEeecccCCCeeEEEEc--cC-CCEEEEEeC-
Q 008717 357 KT----GVGLISCGWFLDGGGIFAGM-------TDKSICLWDLDGRELESWKGQKTLRISDMAIT--DD-GKRIISICR- 421 (556)
Q Consensus 357 ~~----~~~v~~i~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s--~~-g~~l~~~~~- 421 (556)
.| ...|..-..+++.++++..| -.|.+.+|..+.+....+.++-. ....+... +. ...++.+..
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~-~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHh-hhheeccCCCCCCceEEEEEEec
Confidence 44 45677777788888877544 35788899887554433333221 22222211 11 112222221
Q ss_pred --CCeEEEEECCCC---e--------eeeeec---CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccC
Q 008717 422 --EAAILLLDREAN---F--------ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (556)
Q Consensus 422 --d~~I~i~d~~~~---~--------~~~~~~---~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~ 485 (556)
.+.++|.++... . ..+... ..-..++..|+.-..+..-+.-|.|++||+.++ .++..-+-...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~-~~i~~~ris~~ 301 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGE 301 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc-hhhhhccccCC
Confidence 368999888553 1 011111 223456778887788888899999999999998 77766666666
Q ss_pred ceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceeee
Q 008717 486 ARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAAA 524 (556)
Q Consensus 486 ~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 524 (556)
.+++ .+...+.+. +++....|.|.--.+....+++.
T Consensus 302 ~iF~--~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv~y 337 (1630)
T 1xi4_A 302 TIFV--TAPHEATAG-IIGVNRKGQVLSVCVEEENIIPY 337 (1630)
T ss_pred ceEE--eccCCCCCc-eEEEcCCceEEEEEEccchhhhh
Confidence 6665 344233343 44556788887777776665543
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.21 E-value=0.23 Score=53.44 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=108.8
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCcEEEEE-e-----cC-CCceEEEEEec-CCCeEEEEeCC------CcEEEEEC
Q 008717 327 PNDHQLLTCGQE----EAIRRWDVNSGECLHVY-E-----KT-GVGLISCGWFL-DGGGIFAGMTD------KSICLWDL 388 (556)
Q Consensus 327 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~-~~~v~~i~~~~-~~~~l~~~~~d------g~i~vwd~ 388 (556)
.++..++.||.+ ..+.+||..+++....- . .. ...-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46889999887654433 1 11 11112333343 67777777743 35889999
Q ss_pred CCCeEEEeecccCCCe-eEEEEccCCCEEEEEeCCC--eEEEEECCCCe-eeeee------cCCceEEEEEcCC-CCEEE
Q 008717 389 DGRELESWKGQKTLRI-SDMAITDDGKRIISICREA--AILLLDREANF-ERWIE------EEEVITSFSLSKD-NKYLL 457 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~v-~~v~~s~~g~~l~~~~~d~--~I~i~d~~~~~-~~~~~------~~~~i~~v~~sp~-~~~l~ 457 (556)
.+..-........... .+++...++..++.|+.++ .+.+||..+.. ..... .......+.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8765544433222122 2233324788888887654 69999999987 22221 1222333555655 67777
Q ss_pred EEEc--C-----CeEEEEEcCCCCcc-----eeEEeCc-cCceeEEEEeecCCCCcEEEEeeC--------CCcEEEEEc
Q 008717 458 VNLI--N-----QEIHLWSIESDPKL-----VSRYKGH-KRARFVIRSCFGGFEQAFIASGSE--------DSQNVPEIL 516 (556)
Q Consensus 458 ~~~~--d-----g~I~lwd~~~~~~~-----~~~~~~~-~~~~~~i~~~~~s~~~~~l~sgs~--------dg~v~iwd~ 516 (556)
.|+. + +.+.+||+.+. .- ...+... ..+.....++. ..++++++.|+. ...|.+||+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~-~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAE-NATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTT-CSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred ECCcCCCCCeeeCcEEEEEccCC-ccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 7765 2 45899999876 31 1222111 11111111222 223777777774 346999999
Q ss_pred CCCcee
Q 008717 517 LSESVA 522 (556)
Q Consensus 517 ~~~~~~ 522 (556)
.+..-.
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 877643
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.13 E-value=2 Score=46.59 Aligned_cols=188 Identities=10% Similarity=0.114 Sum_probs=114.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcE
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (556)
...|.++....+| .|..|+.+| +..||..+. .+.. ........|.++.. .++ .|..++.+ -+..+|..+++.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~-~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD-RYEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTT-EECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC-EEEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence 3568888877776 455566555 788888754 2211 11112335777654 344 45555555 588889877664
Q ss_pred EEEEe-----cCCCceEEEEEecCCCeEEEEeCCCcEEEEECCCCeEEEeeccc-----CCCeeEEEEccCCCEEEEEeC
Q 008717 352 LHVYE-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDDGKRIISICR 421 (556)
Q Consensus 352 ~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~ 421 (556)
. .+. .....|.++....++... +|+.+ -+..+|..++......... ...|.++...+++..|..|+.
T Consensus 134 ~-~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~ 210 (758)
T 3ott_A 134 T-SFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE 210 (758)
T ss_dssp E-EECHHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE
T ss_pred E-EeccCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC
Confidence 3 331 123457787777666544 45554 4788898776654433211 124888888887776555654
Q ss_pred CCeEEEEECCCCee-eee-ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 422 EAAILLLDREANFE-RWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 422 d~~I~i~d~~~~~~-~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
+-+..||..+.+. ... .....|.++...++|.+.+ |+ ++-+.+++..+.
T Consensus 211 -~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT-~~Gl~~~~~~~~ 261 (758)
T 3ott_A 211 -GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GT-DNGLYVYHNDTT 261 (758)
T ss_dssp -EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EE-TTEEEEECCTTS
T ss_pred -CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-Ee-CCceeEEecCCC
Confidence 4688899887762 221 1234588888888887554 45 446888887664
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.05 E-value=0.77 Score=44.74 Aligned_cols=139 Identities=12% Similarity=0.187 Sum_probs=80.5
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------cCCCceEEEEEecC---CCeEEEEe-C-------C
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-------KTGVGLISCGWFLD---GGGIFAGM-T-------D 380 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~---~~~l~~~~-~-------d 380 (556)
....++|.|+|+.|+.+...|.|++++.. +.....+. ........++++|+ +..|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999844455678999999853 43211111 12345689999996 45555543 2 2
Q ss_pred CcEEEEECCCC-----eEEEee---c---ccCCCeeEEEEccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 008717 381 KSICLWDLDGR-----ELESWK---G---QKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN--- 433 (556)
Q Consensus 381 g~i~vwd~~~~-----~~~~~~---~---~~~~~v~~v~~s~~g~~l~~~~~-------------d~~I~i~d~~~~--- 433 (556)
..|..|++... ....+. . ........++|.|||.+.++.+. .|.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35767766432 111111 1 11123578999999965555433 246777777643
Q ss_pred ----------e-eeeeecCCceEEEEEcC-CCCEEEE
Q 008717 434 ----------F-ERWIEEEEVITSFSLSK-DNKYLLV 458 (556)
Q Consensus 434 ----------~-~~~~~~~~~i~~v~~sp-~~~~l~~ 458 (556)
. ..+.........++|+| +|+++++
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 2 12222234478899999 5654444
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.16 Score=49.01 Aligned_cols=187 Identities=8% Similarity=0.010 Sum_probs=96.4
Q ss_pred CEEEEEeCCCcEEEEEeecCCeeEEEEEecCC-CCCeEEEEe--CCCCCEEEEE--eCCCcEEEEECCCCcEEEEEecC-
Q 008717 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSW--SPNDHQLLTC--GQEEAIRRWDVNSGECLHVYEKT- 358 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~--s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~- 358 (556)
..++.++.||.|.-+|..++ +....+... ..++....- .+.+..++.+ +.||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 36778889999999998765 333444322 122222110 0112234433 58999999999888655444321
Q ss_pred ---CCceEE---EEE-e----cCCCeEEEEeCCCcEEEEECCCCeEEEeecccCC-C------eeEEEEc-----cCCCE
Q 008717 359 ---GVGLIS---CGW-F----LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL-R------ISDMAIT-----DDGKR 415 (556)
Q Consensus 359 ---~~~v~~---i~~-~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~------v~~v~~s-----~~g~~ 415 (556)
..++.. ... . ..+..+++|+.+|.+...|+++++.......... . ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 122221 000 0 1456889999999999999987766544433210 0 0111111 12356
Q ss_pred EEEEeCCCeEEEEECCCCe---eeeeec-CCceE-----EEEEcCCCCEEEEEEcCCeEEEEEcCCCCcce
Q 008717 416 IISICREAAILLLDREANF---ERWIEE-EEVIT-----SFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (556)
Q Consensus 416 l~~~~~d~~I~i~d~~~~~---~~~~~~-~~~i~-----~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~ 477 (556)
++.+..+..+.+.+ +++. ..+... ...+. +-..+.|+.+ ++++.||.|.-+|..++ ..+
T Consensus 168 v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G-~~~ 235 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFR-IAR 235 (339)
T ss_dssp EEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTC-CEE
T ss_pred EEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCC-cEE
Confidence 77777777777766 3333 000000 00000 0001234555 44677888888887776 443
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.83 E-value=0.3 Score=47.55 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=67.6
Q ss_pred CcEEEEECCCCcEEEEEecC--CCceEEEEEecCCCeEEEEeC------CCcEEEEEC--CCCeEEEeecccC--CCeeE
Q 008717 339 EAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMT------DKSICLWDL--DGRELESWKGQKT--LRISD 406 (556)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~------dg~i~vwd~--~~~~~~~~~~~~~--~~v~~ 406 (556)
..+.+||..+.+....-... ...-.+++.. ++..++.|+. ...+..||+ .+..-........ .....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 47899999887644332211 1111233332 5666677653 345777887 4444333322111 11122
Q ss_pred EEEccCCCEEEEEeCC----------------------CeEEEEECCCCe-eeeeecC-CceEEEEEcCCCCEEEEEEcC
Q 008717 407 MAITDDGKRIISICRE----------------------AAILLLDREANF-ERWIEEE-EVITSFSLSKDNKYLLVNLIN 462 (556)
Q Consensus 407 v~~s~~g~~l~~~~~d----------------------~~I~i~d~~~~~-~~~~~~~-~~i~~v~~sp~~~~l~~~~~d 462 (556)
.+...+++.++.|+.+ ..+.+||+.+.+ ....... ......++.-+++.++.|+.+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence 2333466677777632 257899999877 3222211 111112233467888888865
Q ss_pred C------eEEEEEcCCCCccee
Q 008717 463 Q------EIHLWSIESDPKLVS 478 (556)
Q Consensus 463 g------~I~lwd~~~~~~~~~ 478 (556)
+ .|.+++++++ +.+.
T Consensus 327 ~~~~~~~~v~~l~~~~~-~~~~ 347 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDN-KVTV 347 (357)
T ss_dssp GGGCEEEEEEEEEC-CC-SCEE
T ss_pred CCCCEeeeEEEEEEcCc-EeEe
Confidence 3 3666688776 4443
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.1 Score=50.41 Aligned_cols=189 Identities=8% Similarity=-0.051 Sum_probs=103.0
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecC-CCceEEEEEe--cCCCeEEEE--eCCCcEEEEECCCCeEEEeecccCCCe
Q 008717 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWF--LDGGGIFAG--MTDKSICLWDLDGRELESWKGQKTLRI 404 (556)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v 404 (556)
..++.++.||.|.-.|..+|+..-.++.. ..++....-. +.+..++.+ +.||.|+.+|..++.......... .+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~-lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ-LV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH-HH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc-ce
Confidence 47888999999999999999999888754 1222221100 112244444 589999999987664332111110 11
Q ss_pred --eEEEEc-----------cCCCEEEEEeCCCeEEEEECCCCeeeee-ecCCce--------EEEEEc-----CCCCEEE
Q 008717 405 --SDMAIT-----------DDGKRIISICREAAILLLDREANFERWI-EEEEVI--------TSFSLS-----KDNKYLL 457 (556)
Q Consensus 405 --~~v~~s-----------~~g~~l~~~~~d~~I~i~d~~~~~~~~~-~~~~~i--------~~v~~s-----p~~~~l~ 457 (556)
.-+..+ ..+..+++++.++.+...|..+++.... ....+. .|.... -.+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 001111 1455788999999999999999983332 222111 111111 1235677
Q ss_pred EEEcCCeEEEEEcCCCCcceeEE-----eCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCCCceee
Q 008717 458 VNLINQEIHLWSIESDPKLVSRY-----KGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 458 ~~~~dg~I~lwd~~~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~~~~~~ 523 (556)
.+..+..+.+.+ +++ + +..+ ...............+.|+.++ .++.||.|+..|..+|...-
T Consensus 170 ig~~~y~v~~~~-~sG-~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDG-A-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTS-C-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCC-C-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence 777777777766 444 3 2211 1111000000000002346664 47888999988888887654
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.11 E-value=0.34 Score=52.17 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCCEEEEEeCC------CcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCC--cEEEEECCCCcEEEE
Q 008717 283 DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHV 354 (556)
Q Consensus 283 ~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 354 (556)
++..++.|+.+ ..+.+||..++ .+.....+......- +++...++..++.|+.++ .+.+||..+.+....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 66677777643 34777887753 333322222211222 223323788888888754 799999988764432
Q ss_pred Ee-----cCCCceEEEEEecC-CCeEEEEeC--C-----CcEEEEECCCCe------EEEeecc-cCCCe-eEEEEccCC
Q 008717 355 YE-----KTGVGLISCGWFLD-GGGIFAGMT--D-----KSICLWDLDGRE------LESWKGQ-KTLRI-SDMAITDDG 413 (556)
Q Consensus 355 ~~-----~~~~~v~~i~~~~~-~~~l~~~~~--d-----g~i~vwd~~~~~------~~~~~~~-~~~~v-~~v~~s~~g 413 (556)
-. .......++.+..+ +..++.|+. + ..+.+||+.+.. ....... ..... .+++...++
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR 608 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence 21 12222233555554 566777765 2 358899998765 2222221 11111 233333446
Q ss_pred CEEEEEeC--------CCeEEEEECCCCe
Q 008717 414 KRIISICR--------EAAILLLDREANF 434 (556)
Q Consensus 414 ~~l~~~~~--------d~~I~i~d~~~~~ 434 (556)
..++.|+. ...|.+||+.+.+
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 77777774 3469999999887
No 349
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.80 E-value=0.6 Score=53.23 Aligned_cols=220 Identities=8% Similarity=0.110 Sum_probs=128.1
Q ss_pred CCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCceEEEEEecCCC
Q 008717 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (556)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 372 (556)
..+|.|.|+..+... .+.-. .--+...+|..+.|+.-. ..++.|+|+.+...+..+.-.. +|.-=.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~--~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP--IRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCc--ccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-C
Confidence 347888888865432 11111 122345677777666544 6789999999888777766444 4555566533 4
Q ss_pred eEEEEeCCCcEEEEECCCC-eEEEeeccc----CCCeeEEEEccCCCEEEEEe-------CCCeEEEEECCCCe-eeeee
Q 008717 373 GIFAGMTDKSICLWDLDGR-ELESWKGQK----TLRISDMAITDDGKRIISIC-------REAAILLLDREANF-ERWIE 439 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~v~~s~~g~~l~~~~-------~d~~I~i~d~~~~~-~~~~~ 439 (556)
.|+..+ +..|+.|++.+. .....+..+ ...|..-..+++.+|++..+ -.|.+.+|....+. ..+.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg 196 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence 444443 357999999642 222222211 23688888899999877544 34789999988776 44445
Q ss_pred cCCceEEEEEcC---CCCEEEEEEc---CCeEEEEEcCCC--Ccc------eeEE-eCccCceeEEEEeecCCCCcEEEE
Q 008717 440 EEEVITSFSLSK---DNKYLLVNLI---NQEIHLWSIESD--PKL------VSRY-KGHKRARFVIRSCFGGFEQAFIAS 504 (556)
Q Consensus 440 ~~~~i~~v~~sp---~~~~l~~~~~---dg~I~lwd~~~~--~~~------~~~~-~~~~~~~~~i~~~~~s~~~~~l~s 504 (556)
|.+....+.+.. ....++.+.. .+.++|.++... +.. +..+ .......+.+.... ++.-..++.
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v-s~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe-ccccCEEEE
Confidence 544443333321 1223333322 268999998542 011 1111 11111122233333 666678888
Q ss_pred eeCCCcEEEEEcCCCceee
Q 008717 505 GSEDSQNVPEILLSESVAA 523 (556)
Q Consensus 505 gs~dg~v~iwd~~~~~~~~ 523 (556)
.+.-|.|+++|+.++..+.
T Consensus 276 itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EecCceEEEEecccchhhh
Confidence 8999999999999987653
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.25 E-value=5.2 Score=40.39 Aligned_cols=108 Identities=12% Similarity=-0.010 Sum_probs=61.3
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCCeeEEEEEec---------CCCCCeEEEEeCCC----CCEEEEEeC
Q 008717 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLS---------GHRKPVFTVSWSPN----DHQLLTCGQ 337 (556)
Q Consensus 272 ~~~V~~~~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~~~ 337 (556)
-...+.|+|.|||. .|+.+...|.|++++.........+..+. ........|+|+|+ +...++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34678999999996 45555678999998643211101111111 11456889999996 333333221
Q ss_pred --C----------CcEEEEECCC----------CcEEEEEe--cCCCceEEEEEecCCCeEEEEeC
Q 008717 338 --E----------EAIRRWDVNS----------GECLHVYE--KTGVGLISCGWFLDGGGIFAGMT 379 (556)
Q Consensus 338 --d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~ 379 (556)
+ ..|.-|.+.. .+.+..+. ........++|.|||.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344566542 12333332 12334578999999987777654
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.65 E-value=5 Score=37.47 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=109.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (556)
.|..++-... ..++. . ||.|+.|-....+++.... .....|..++...+ +.+... ||.|..|-....-.+.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~---~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPA---ATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCG---GGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCc---cCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCC
Confidence 4555554432 22333 4 8999999876544432111 11235666666533 222234 8999999764321111
Q ss_pred EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
.-..-...|..++... .+.+.-. ||.|+.|-... +++- ........|..++...+. .+.-. ||.|+.|-...
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCT
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCC
Confidence 1111134577776653 3444444 89999997653 2221 111122357777665443 22334 79999997654
Q ss_pred Ce-e-eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCc
Q 008717 433 NF-E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (556)
Q Consensus 433 ~~-~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~ 510 (556)
.- . .-......|..++...+.. ++. .||.|+.|-.....++-..... ...+..+ .. ..+..+++ . ||.
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~-~~~v~~i--~~-G~~h~~al--~-~g~ 238 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEA-LSGVSAI--AS-GEWYSLAL--K-NGK 238 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGG-GSSCCEE--EE-CSSCEEEE--E-TTE
T ss_pred CCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCccc-CCCceEE--Ec-CCCEEEEE--E-CCE
Confidence 32 1 1111234577776654332 333 5999999976543222111111 1223332 22 33333333 3 999
Q ss_pred EEEEEcCC
Q 008717 511 NVPEILLS 518 (556)
Q Consensus 511 v~iwd~~~ 518 (556)
|+.|-...
T Consensus 239 v~~wG~n~ 246 (282)
T 3qhy_B 239 VIAWGSSR 246 (282)
T ss_dssp EEEESTTC
T ss_pred EEEecCCC
Confidence 99995544
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.38 E-value=13 Score=35.53 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=113.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEee---cCC---eeEEEE---EecCCCCCeEEEE-eCC--CCCEEEEEeCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVK---EDG---QVSLKH---RLSGHRKPVFTVS-WSP--NDHQLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~---~~~---~~~~~~---~~~~h~~~v~~l~-~s~--~~~~l~s~~~dg~ 340 (556)
+.+..+........|+.-+..|.++-.... ... .-.++. .+. ....|.++. ... +..++++++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 445555555556666666677776655432 210 011111 122 234455543 332 5789999999999
Q ss_pred EEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC--CC--------eEEEeecccCCC
Q 008717 341 IRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GR--------ELESWKGQKTLR 403 (556)
Q Consensus 341 i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~--~~--------~~~~~~~~~~~~ 403 (556)
++...+.. |.....+.. ...+..+........++..+..|.+..+... .- -+..+.-.....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 99988643 211122333 3445555555566778888889988877765 21 111111122336
Q ss_pred eeEEEEccCCCEEEEEeCCCeEEEEECCCCe--------ee---eeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 404 ISDMAITDDGKRIISICREAAILLLDREANF--------ER---WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 404 v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~--------~~---~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
|.++...+++..++..+..|.++.-.+.... .. +......+..+....+...++..+.+|.+.-++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 7777776667789999999999988764322 11 111133455554444555677777788877777643
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.17 E-value=20 Score=34.89 Aligned_cols=180 Identities=9% Similarity=0.017 Sum_probs=90.3
Q ss_pred EEEEEeCCCcEEEEEeec-CCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCC----cEEEEECCCCcEEEEEec--
Q 008717 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE----AIRRWDVNSGECLHVYEK-- 357 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~-- 357 (556)
.|..|+..| +.+++... +......... .....|.+|++.| +...|.+++..| .|...+ +.|+.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 566666666 55555432 2233332211 2245699999998 333444444444 343332 33332222211
Q ss_pred ------------CCCceEEEEEec-C-CCeEEEEeCCCcEEEEECCCCeEEEeec------------------ccCCCee
Q 008717 358 ------------TGVGLISCGWFL-D-GGGIFAGMTDKSICLWDLDGRELESWKG------------------QKTLRIS 405 (556)
Q Consensus 358 ------------~~~~v~~i~~~~-~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------~~~~~v~ 405 (556)
....|.++++.| + ...+++++..+.|...+-.+..-..... .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 112477888887 2 5667776666666655433333222211 0112578
Q ss_pred EEEEccC-CCEEEEEeCCCeEEEEECCCCe-eeeee-c------------CCceEEEEEcCC-CCEEEEEEcCCeEEEEE
Q 008717 406 DMAITDD-GKRIISICREAAILLLDREANF-ERWIE-E------------EEVITSFSLSKD-NKYLLVNLINQEIHLWS 469 (556)
Q Consensus 406 ~v~~s~~-g~~l~~~~~d~~I~i~d~~~~~-~~~~~-~------------~~~i~~v~~sp~-~~~l~~~~~dg~I~lwd 469 (556)
+|.++|. ...++.+..++.|...+-.... ..... . ...+.++.++|+ ...|+++... .|...+
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s~ 259 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRMD 259 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEeC
Confidence 9999884 3445555555555444322222 21111 0 124889999986 3566666644 454443
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.73 E-value=4.1 Score=41.71 Aligned_cols=121 Identities=10% Similarity=0.044 Sum_probs=79.7
Q ss_pred CeeEEEEccCCCEEEEEe-CCCeEEEEECCCCe--------------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 008717 403 RISDMAITDDGKRIISIC-REAAILLLDREANF--------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~-~d~~I~i~d~~~~~--------------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l 467 (556)
....+.++|||+++++++ .+.++.++|++... .......-.....+|+++|.-..+-.-|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 577889999999987765 47789999988521 111223445678999999954445557999999
Q ss_pred EEcCCC---------CcceeEEeCccCceeEEEE--eecCCCCcEEEEeeC---CCc----------EEEEEcCCCceee
Q 008717 468 WSIESD---------PKLVSRYKGHKRARFVIRS--CFGGFEQAFIASGSE---DSQ----------NVPEILLSESVAA 523 (556)
Q Consensus 468 wd~~~~---------~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~sgs~---dg~----------v~iwd~~~~~~~~ 523 (556)
|++... ...+.++.-|-++...... -.-.+||++|++... |.. -.+.|+...+...
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~l 483 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKL 483 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCceEE
Confidence 998642 1356666666554332110 012578999988753 543 3778887766543
No 355
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=86.97 E-value=0.24 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=10.0
Q ss_pred CCCCCccccccC
Q 008717 5 EESEPPLKRAKG 16 (556)
Q Consensus 5 ~~~~~~~~~~~~ 16 (556)
+||+||.||+++
T Consensus 16 ddddppkkrrrl 27 (28)
T 3ukx_C 16 DDDDPPKKRRRL 27 (28)
T ss_dssp CSSSCCSCCCCC
T ss_pred cCCCchhhhhcc
Confidence 678899999875
No 356
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=86.26 E-value=0.77 Score=33.58 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcc
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIP 93 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~ 93 (556)
-++-||-.||+-.||+.|+.+|+-|+|.+
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 57789999999999999999999999987
No 357
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=85.81 E-value=0.2 Score=26.49 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=10.1
Q ss_pred CCCCCccccccC
Q 008717 5 EESEPPLKRAKG 16 (556)
Q Consensus 5 ~~~~~~~~~~~~ 16 (556)
||+|||-||.++
T Consensus 16 edeepprkrkrl 27 (28)
T 3ukw_C 16 EDEEPPRKRKRL 27 (28)
T ss_dssp GGGSCCSSCCCC
T ss_pred cccCcchhhhcc
Confidence 788999998775
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.57 E-value=31 Score=33.52 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=91.3
Q ss_pred CCcEEEEEEcc--CCCEEEEEeCCC--cEEEEEeec-CCeeEEEEE---ecC--------CCCCeEEEEeCC-C-CCEEE
Q 008717 272 SDEVWFLQFSH--DGKYLASSSKDQ--SAIIWEVKE-DGQVSLKHR---LSG--------HRKPVFTVSWSP-N-DHQLL 333 (556)
Q Consensus 272 ~~~V~~~~~sp--~g~~las~s~dg--~i~iwd~~~-~~~~~~~~~---~~~--------h~~~v~~l~~s~-~-~~~l~ 333 (556)
...|.++++.| ++.+.+ ++..| ...||.... +........ +.. +...|.++++.| + ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35799999998 454444 44344 112343332 222222211 111 112577889987 2 45566
Q ss_pred EEeCCCcEEEEECCCCcEEEEEec-------------------CCCceEEEEEec-CCCeEEEEeCCCcEEEEECCCCeE
Q 008717 334 TCGQEEAIRRWDVNSGECLHVYEK-------------------TGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL 393 (556)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~i~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 393 (556)
.++..+-|...+ +.|+.-..+.. ....+.++.+.| +...++++..++.|...+-.+...
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW 211 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc
Confidence 665555555443 23332222221 123578888987 345566665555555543333332
Q ss_pred EEeecc-c-----------CCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCe-eeeee-c-C---CceEEEEEcCC-C
Q 008717 394 ESWKGQ-K-----------TLRISDMAITDD-GKRIISICREAAILLLDREANF-ERWIE-E-E---EVITSFSLSKD-N 453 (556)
Q Consensus 394 ~~~~~~-~-----------~~~v~~v~~s~~-g~~l~~~~~d~~I~i~d~~~~~-~~~~~-~-~---~~i~~v~~sp~-~ 453 (556)
...... . ...+.+++++|+ ...+++++.. .|...+-.... ..... . . ..+.++.++|. .
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 222110 0 124889999986 3566666554 45555433333 22111 1 1 23567888863 3
Q ss_pred CEEEEEE
Q 008717 454 KYLLVNL 460 (556)
Q Consensus 454 ~~l~~~~ 460 (556)
..|.++.
T Consensus 291 ~~l~~~t 297 (394)
T 3b7f_A 291 RTVWVFP 297 (394)
T ss_dssp TCEEEEE
T ss_pred CEEEEEe
Confidence 4444443
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.06 E-value=8.2 Score=35.95 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=94.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 008717 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (556)
Q Consensus 274 ~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (556)
.|..++-..+- .++. . ||.|..|-....+++..... -...|..++...+ +.+.-. ||.|+.|=....-.+.
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC
Confidence 45555554332 2333 4 89999998775544321111 1245777766533 444445 8999999764321111
Q ss_pred EEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC-CeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 354 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
.-......|..++.-. .+.+.-. ||.|+.|-... +++- ........|..++...+.. ++. .||.|+.|-...
T Consensus 135 ~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 135 VPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNR 207 (282)
T ss_dssp CCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCT
T ss_pred CCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCC
Confidence 1111234466665432 2333333 79999997643 2211 1111123577777654432 333 589999997654
Q ss_pred Ce-e-eeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008717 433 NF-E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (556)
Q Consensus 433 ~~-~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~ 473 (556)
.- . .-......|..++...... ++ -. ||.|+.|-....
T Consensus 208 ~gqlg~p~~~~~~v~~i~~G~~h~-~a-l~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 208 YKQTTVPTEALSGVSAIASGEWYS-LA-LK-NGKVIAWGSSRT 247 (282)
T ss_dssp TSTTCCCGGGGSSCCEEEECSSCE-EE-EE-TTEEEEESTTCC
T ss_pred CCCCCCCcccCCCceEEEcCCCEE-EE-EE-CCEEEEecCCCC
Confidence 32 1 1111234577776654433 33 33 999999976543
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.68 E-value=27 Score=32.22 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=114.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEE---EeecCCeeEEEEEecCCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIW---EVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iw---d~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 348 (556)
+.+..+.......+|+.-+.+|.++-- ++....... + +. ....|..+.... +..+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 456666655566667777778877643 333221111 1 32 345666664421 467899999999999988754
Q ss_pred C------cEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--------CeEEEeecccCCCeeEEEEccCCC
Q 008717 349 G------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------RELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 349 ~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
- .....++. ...+..+........++..+.+|.+..++... .-+..+.-.....|..+...+++.
T Consensus 100 ~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 100 FEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEP 178 (276)
T ss_dssp TTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred hhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence 2 11122222 34455555555566888889999988887631 111111112223677766666677
Q ss_pred EEEEEeCCCeEEEEECCCCe--------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEE--EEcCC
Q 008717 415 RIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL--WSIES 472 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~--------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~l--wd~~~ 472 (556)
.++..+..|.++...+.... .......+.+..+....+...++..+.+|.+.. +++..
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 88899999999988865422 111133444555444334456666777787777 77643
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.12 E-value=35 Score=34.26 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=34.8
Q ss_pred CeeEEEEccCCC-EEEEEeCCCeEEEEECCCCe--eee------ee------cCCceEEEEEcCC
Q 008717 403 RISDMAITDDGK-RIISICREAAILLLDREANF--ERW------IE------EEEVITSFSLSKD 452 (556)
Q Consensus 403 ~v~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~--~~~------~~------~~~~i~~v~~sp~ 452 (556)
..+.|+|.|+|. .++++...|.|++++..... ..+ .. .......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 678999999996 45666788999999754321 111 11 1356788999996
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.14 E-value=49 Score=32.14 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCcEEEEEeecCCe--------eEEEEEecC-CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCC-C----
Q 008717 284 GKYLASSSKDQSAIIWEVKEDGQ--------VSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-G---- 349 (556)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~--------~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~---- 349 (556)
....+.-..||.|..|-....++ ......+.. ....+..++.+....+.+....||.|+.|-... +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 34455556788998887653221 111122222 223455567776677788888899999995432 0
Q ss_pred ------cEEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCC----------C--eEEEeecccCCCeeEEEEc
Q 008717 350 ------ECLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----------R--ELESWKGQKTLRISDMAIT 410 (556)
Q Consensus 350 ------~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~----------~--~~~~~~~~~~~~v~~v~~s 410 (556)
.....+.. ....|..++. ...+.++-..+|.|+.|-... . ............|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 01111211 1224555554 345666667889999997532 0 1111222222357777765
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCe------------eeeee--cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008717 411 DDGKRIISICREAAILLLDREANF------------ERWIE--EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (556)
Q Consensus 411 ~~g~~l~~~~~d~~I~i~d~~~~~------------~~~~~--~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~ 476 (556)
......++...||.|+.|-....- ..... ....|..++.. ..+.++-..+|.|+.|-.....++
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 433566667889999999654210 11111 12235555543 345555567899999965321111
Q ss_pred ----------eeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 477 ----------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 477 ----------~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
...+.... ...++.+.. .....+....||.|+.|=..
T Consensus 298 G~g~~~~~~~P~~v~~l~-~~~v~~ia~---G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQ-GKKVIAIAT---GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CSSSCCCEEEEEECGGGT-TCCEEEEEE---CSSEEEEEETTCCEEEEECC
T ss_pred CCCCCccccCCeEeccCC-CCCEEEEEe---ccCeEEEECCCCCEEEeeCC
Confidence 01111111 111233333 22344556789999999654
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.48 E-value=32 Score=38.16 Aligned_cols=38 Identities=11% Similarity=0.329 Sum_probs=33.8
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 356 (556)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999988764
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.04 E-value=43 Score=30.88 Aligned_cols=155 Identities=11% Similarity=0.021 Sum_probs=93.1
Q ss_pred CCceEEEEEec--CCCeEEEEeCCCcEEEEECCCC-----eEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q 008717 359 GVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGR-----ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (556)
Q Consensus 359 ~~~v~~i~~~~--~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~ 431 (556)
...|..+.. + +...++..+.+|.++...+..- -...+.-.....+..+........++..+..|.+..++..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 445555543 4 4678999999999999886431 1222211222356666666666788888999998888754
Q ss_pred CCe--------eee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC------CcceeEEeCccCceeEEEEeec
Q 008717 432 ANF--------ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFG 495 (556)
Q Consensus 432 ~~~--------~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~------~~~~~~~~~~~~~~~~i~~~~~ 495 (556)
.-. ... ......|..+...+++.+++..+..|.++...+..- .+-+..+ ...+. .+.+..
T Consensus 146 eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~--lv~~~~- 221 (276)
T 3no0_A 146 EVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDT--LVDLIP- 221 (276)
T ss_dssp GSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSC--EEEEEE-
T ss_pred hCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCc--EEEEEE-
Confidence 311 111 223456777666666778999999999999887432 0122222 12222 232322
Q ss_pred CCCCcEEEEeeCCCcEEE--EEcCC
Q 008717 496 GFEQAFIASGSEDSQNVP--EILLS 518 (556)
Q Consensus 496 s~~~~~l~sgs~dg~v~i--wd~~~ 518 (556)
..++..++..+.+|.+.. ++...
T Consensus 222 ~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 222 IKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp ESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred eCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 224456777788888877 76543
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.17 E-value=52 Score=30.86 Aligned_cols=198 Identities=6% Similarity=-0.013 Sum_probs=110.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeec---CCe---eEEEE---EecCCCCCeEEEEe-C--CCCCEEEEEeCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---DGQ---VSLKH---RLSGHRKPVFTVSW-S--PNDHQLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~---~~~---~~~~~---~~~~h~~~v~~l~~-s--~~~~~l~s~~~dg~ 340 (556)
+.+..+........|+..+..|.++-+.... .+. -.++. .+. ....|.++.. . .++.+++..+.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 3444444555566677777888876665531 110 01111 122 2344555543 2 35668999999999
Q ss_pred EEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--------CeEEEeecccCCCee
Q 008717 341 IRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------RELESWKGQKTLRIS 405 (556)
Q Consensus 341 i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~ 405 (556)
++...+.. |.....+... +.+..+....+...++..+.+|.+..++... .-+..+.-.....|.
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv 199 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 199 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEE
Confidence 99987641 2111223333 4555555555566788888889888887631 112222222233677
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCe-----------eeeeecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 406 DMAITDDGKRIISICREAAILLLDREANF-----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~~~-----------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
++...+++..+++.+..|.++-.++.... ..+....+.+..+....+...++..+.+|.+.-+++..
T Consensus 200 ~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 200 SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 77665566678888999999888774321 11112224454444433445556666677776666644
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.93 E-value=54 Score=30.99 Aligned_cols=234 Identities=11% Similarity=0.044 Sum_probs=123.1
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCe-eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC---CC------CcE
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV---NS------GEC 351 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~---~~------~~~ 351 (556)
|+...+++.+.+|.|+--...+-.. ......+... +.+..+........|+..+..|.+.-... .. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 5566788888899888765441100 0000122322 23434444444556666677777655543 21 221
Q ss_pred EE---EEecCCCceEEEEEecC---CCeEEEEeCCCcEEEEECCC-------CeEEEeecccCCCeeEEEEccCCCEEEE
Q 008717 352 LH---VYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDG-------RELESWKGQKTLRISDMAITDDGKRIIS 418 (556)
Q Consensus 352 ~~---~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 418 (556)
+. .+. ....|.++...++ +.+++..+.+|.++...+.. .-+..+.-.....+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2334555443332 56799999999999988741 1222222222235656555555667888
Q ss_pred EeCCCeEEEEECCCCe--------eeee--ecCCceEEEEEcCCCC-EEEEEEcCCeEEEEEcCCC------CcceeEEe
Q 008717 419 ICREAAILLLDREANF--------ERWI--EEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESD------PKLVSRYK 481 (556)
Q Consensus 419 ~~~d~~I~i~d~~~~~--------~~~~--~~~~~i~~v~~sp~~~-~l~~~~~dg~I~lwd~~~~------~~~~~~~~ 481 (556)
.+.+|.+..++...-. ...+ .....|.++..-+++. .+++.+..|..+..++..- .+-+..++
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 8999998888764321 1111 2344566665544455 7888888999888877541 01111221
Q ss_pred Cc-cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 482 GH-KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 482 ~~-~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
.. ......+.+.... ++..|+..+.+|.+.-..+..
T Consensus 241 ~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 11 1111122222223 334466677777776666543
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=75.88 E-value=59 Score=31.42 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=109.5
Q ss_pred EccCCCEEEEEeCCCcEEEEEeec------CCeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEE---CCC--
Q 008717 280 FSHDGKYLASSSKDQSAIIWEVKE------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD---VNS-- 348 (556)
Q Consensus 280 ~sp~g~~las~s~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd---~~~-- 348 (556)
+-|+..++++.+.+|.|+--.+.+ ++.-.....+.. ...+..+........|+..+..|.+.-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346777889999999998765432 111112223333 34555555555556677677777765554 321
Q ss_pred ----CcEEE---EEecCCCceEEEEEec---CCCeEEEEeCCCcEEEEECCC------CeEEEeecccCCCeeEEEEccC
Q 008717 349 ----GECLH---VYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 349 ----~~~~~---~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~v~~s~~ 412 (556)
|..+. .+. ....|.++.... ++.+++.++..|.++...+.. +-+..+.-.....+-.+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 22111 122 234565554432 456899999999999988632 1122222122335555555555
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--------eee--eecCCceEEEEEcC-------------------------------
Q 008717 413 GKRIISICREAAILLLDREANF--------ERW--IEEEEVITSFSLSK------------------------------- 451 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~~--------~~~--~~~~~~i~~v~~sp------------------------------- 451 (556)
...++..+.+|.+..++...-. ... ......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6678888899998888764321 111 12344555555444
Q ss_pred ----CCCEEEEEEcCCeEEEEEcCC
Q 008717 452 ----DNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 452 ----~~~~l~~~~~dg~I~lwd~~~ 472 (556)
++.++++.+..|..+...+..
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHH
Confidence 456899999999999888753
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.54 E-value=61 Score=31.41 Aligned_cols=182 Identities=9% Similarity=0.105 Sum_probs=91.7
Q ss_pred EEEEEeCCCcEEEEEeecCCee--------EEEEEecC-CCCCeEEEEeCCCCCEEEEEeCCCcEEEEECCCC-------
Q 008717 286 YLASSSKDQSAIIWEVKEDGQV--------SLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG------- 349 (556)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~--------~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------- 349 (556)
.++.-..||+|..|-....+++ .....+.. ....|..++- ...+.+....||.|..|=....
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 3444556788888876643321 11111110 0123444443 3456666678899999854321
Q ss_pred -c---EEEEEec-CCCceEEEEEecCCCeEEEEeCCCcEEEEECCC---------C---eEEEeecccCCCeeEEEEccC
Q 008717 350 -E---CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---------R---ELESWKGQKTLRISDMAITDD 412 (556)
Q Consensus 350 -~---~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~---------~---~~~~~~~~~~~~v~~v~~s~~ 412 (556)
. ....+.. ....+..++.+....+.+.-..||.|+.|-... . ....+.......|..++..
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-- 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-- 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--
Confidence 1 1111211 123345566666667777778899999996531 0 1111111122246565554
Q ss_pred CCEEEEEeCCCeEEEEECCCC-e-----------eeeee--cCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 413 GKRIISICREAAILLLDREAN-F-----------ERWIE--EEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 413 g~~l~~~~~d~~I~i~d~~~~-~-----------~~~~~--~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
....++...+|.|+.|-.... + ..... ....|..++......+.++-..||.|+.|-..
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 345566678899999975321 0 11111 13356666665434566677789999999643
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.38 E-value=90 Score=33.24 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=98.5
Q ss_pred EEE-eCCCCCEEEEE-eCC----CcEEEEECCCCcEEE-EEe-cCCC------ceEEEEEecCCCeEEEEe---------
Q 008717 322 TVS-WSPNDHQLLTC-GQE----EAIRRWDVNSGECLH-VYE-KTGV------GLISCGWFLDGGGIFAGM--------- 378 (556)
Q Consensus 322 ~l~-~s~~~~~l~s~-~~d----g~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~~~~--------- 378 (556)
.+. ++|++++++.+ |.. ..++++|+.+++.+. .+. .... ....++|. |+..++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCc
Confidence 344 78888876654 333 369999999998653 111 0000 11345887 444444432
Q ss_pred --CCCcEEEEECCCC---eEEEeecccCCCeeEEEEccCCCE-----EEEEeC---CCeEEEEECCC--Ce-eeeeecCC
Q 008717 379 --TDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDGKR-----IISICR---EAAILLLDREA--NF-ERWIEEEE 442 (556)
Q Consensus 379 --~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~s~~g~~-----l~~~~~---d~~I~i~d~~~--~~-~~~~~~~~ 442 (556)
....|+.|.+-+. ....+.......-.....++++.+ +++.+. ...+.+.|... +. ..+.....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD 291 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence 1246888877432 122222222222334555667662 444332 24567777654 22 22221221
Q ss_pred ceEEEEEcCCCCEEEEE----------EcCCeEEEEEcCCC------CcceeEEeCccCceeEEEEeecCCCCcEEEEee
Q 008717 443 VITSFSLSKDNKYLLVN----------LINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~----------~~dg~I~lwd~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs 506 (556)
. .+..+.++.+++.. ...+.|...|+.+. ......+-.+......-.+.+ .. +.++++..
T Consensus 292 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~l~~~~~ 367 (711)
T 4hvt_A 292 -A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIST-TK-DRVFLATY 367 (711)
T ss_dssp -C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEE-CS-SCEEEEEE
T ss_pred -c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEE-EC-CEEEEEEE
Confidence 1 23344466555532 24677999998763 122334333433333333444 43 46777777
Q ss_pred CCCc--EEEEEcCCCc
Q 008717 507 EDSQ--NVPEILLSES 520 (556)
Q Consensus 507 ~dg~--v~iwd~~~~~ 520 (556)
.++. |+++++.++.
T Consensus 368 ~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ETTEEEEEEECEETTE
T ss_pred ECCEEEEEEEECCCCc
Confidence 7774 6777776663
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.70 E-value=64 Score=31.20 Aligned_cols=198 Identities=8% Similarity=0.011 Sum_probs=109.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeec---CC---eeEEEE---EecCCCCCeEEEEe-C--CCCCEEEEEeCCC
Q 008717 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---DG---QVSLKH---RLSGHRKPVFTVSW-S--PNDHQLLTCGQEE 339 (556)
Q Consensus 272 ~~~V~~~~~sp~g~~las~s~dg~i~iwd~~~---~~---~~~~~~---~~~~h~~~v~~l~~-s--~~~~~l~s~~~dg 339 (556)
.+.+..+........|+..+..|.++-+.... .+ .-.... .+. ....|.++.. . .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 45666666666667777777888877665431 10 001111 122 2344555443 2 2456899999999
Q ss_pred cEEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--------CeEEEeecccCCCe
Q 008717 340 AIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------RELESWKGQKTLRI 404 (556)
Q Consensus 340 ~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v 404 (556)
.++...+.. |.....+.. ...+..+....+...++..+.+|.+..++... .-+..+.-.....|
T Consensus 124 ~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~V 202 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEV 202 (370)
T ss_dssp EEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCE
T ss_pred eEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEE
Confidence 999988632 222222332 34455555555566788888889888887631 11222222222356
Q ss_pred eEEEEcc-----------------------------------CCCEEEEEeCCCeEEEEECCCCe-----------eeee
Q 008717 405 SDMAITD-----------------------------------DGKRIISICREAAILLLDREANF-----------ERWI 438 (556)
Q Consensus 405 ~~v~~s~-----------------------------------~g~~l~~~~~d~~I~i~d~~~~~-----------~~~~ 438 (556)
.++...+ ++..+++.+..|..+...+.... ..+.
T Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~ 282 (370)
T 3l6v_A 203 VSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 282 (370)
T ss_dssp EEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCC
T ss_pred EEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEec
Confidence 6555544 44678889999998888875432 1111
Q ss_pred ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 439 ~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
...+.+..+.+..+...++..+..|.+.-..+.
T Consensus 283 ~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 283 ERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp TTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred CCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 223344444333344455555666666655554
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.94 E-value=70 Score=30.02 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=108.7
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCe------eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEECC---CCcEE
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQ------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---SGECL 352 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~ 352 (556)
++..++++.+.+|.|+--....-.. -.....+... +.+..+........++..+..|.++-.... .....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4667788889999998776643210 0011122222 334444444445667777888876666542 11100
Q ss_pred ---------EEEecCCCceEEEEEec---CCCeEEEEeCCCcEEEEECCC------CeEEEeecccCCCeeEEEEccCCC
Q 008717 353 ---------HVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 353 ---------~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
..+. ....|..+...+ +..+++..+.+|.++...+.. .-...+.-.....+..+....+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 0111 233455554333 467788999999999888732 112222222233566666655566
Q ss_pred EEEEEeCCCeEEEEECCCCe--------eeee--ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008717 415 RIISICREAAILLLDREANF--------ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~--------~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~ 472 (556)
.++..+.+|.+..+....-. ...+ .....|.++..-+++..+++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 78888999999998875421 1111 2345566666656677788889999999998753
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=67.99 E-value=82 Score=29.71 Aligned_cols=198 Identities=7% Similarity=0.016 Sum_probs=108.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeec---CC---eeEEEE---EecCCCCCeEEE-EeCC--CCCEEEEEeCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---DG---QVSLKH---RLSGHRKPVFTV-SWSP--NDHQLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~---~~---~~~~~~---~~~~h~~~v~~l-~~s~--~~~~l~s~~~dg~ 340 (556)
+.+..+........|+..+..|.++-..... .+ .-.++. .+. ....|.++ ...+ ++.+++.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 3444555555566677777888876665531 11 001111 122 22345554 3332 3668999999999
Q ss_pred EEEEECCC--------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--------CeEEEeecccCCCe
Q 008717 341 IRRWDVNS--------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------RELESWKGQKTLRI 404 (556)
Q Consensus 341 i~iwd~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v 404 (556)
++...+.. |.....+.. .+.+..+........++..+.+|.+..++... .-+..+.-.....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99988741 222222332 24555555555566788888999988887632 11222222223356
Q ss_pred eEEEEccCCC-EEEEEeCCCeEEEEECCCCe--------eeee----ecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008717 405 SDMAITDDGK-RIISICREAAILLLDREANF--------ERWI----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 405 ~~v~~s~~g~-~l~~~~~d~~I~i~d~~~~~--------~~~~----~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~ 471 (556)
.++...+++. .+++.+..|..+..++.... .... .....+..+....++..++..+.+|.+....+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6665545455 78888899998888775421 1111 112244433333334456666667777666664
Q ss_pred C
Q 008717 472 S 472 (556)
Q Consensus 472 ~ 472 (556)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 4
No 373
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=67.15 E-value=4.5 Score=33.81 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=41.8
Q ss_pred chHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccc
Q 008717 110 YWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQ 165 (556)
Q Consensus 110 ~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~ 165 (556)
.|+.....+.--.+.++..-+.+.++|.+...++.++.|++.+|+..|++++..|.
T Consensus 73 Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASLP 128 (158)
T 1am7_A 73 XXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIXASLP 128 (158)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhccccccCC
Confidence 45544444332245566667778889999999999999999999999998886654
No 374
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.99 E-value=1e+02 Score=29.80 Aligned_cols=132 Identities=8% Similarity=0.083 Sum_probs=83.4
Q ss_pred cEEEEECCCC--cEEEEEecC------CCceEEEEEe---cC----CCeEEEEe-CCCcEEEEECCCCeEEEeecc----
Q 008717 340 AIRRWDVNSG--ECLHVYEKT------GVGLISCGWF---LD----GGGIFAGM-TDKSICLWDLDGRELESWKGQ---- 399 (556)
Q Consensus 340 ~i~iwd~~~~--~~~~~~~~~------~~~v~~i~~~---~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~---- 399 (556)
.|.+||+.++ +.++.+.-. .+.+..+.+. |+ +.+++.+. ..+.|.++|+.+++...+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5788999998 888877632 3457888887 22 34555554 456799999987665544420
Q ss_pred c--------------CCCeeEEEEccC----CCEEEEEeCCCeEEEEECC-----CCe----eeeeecCC---ceEEEEE
Q 008717 400 K--------------TLRISDMAITDD----GKRIISICREAAILLLDRE-----ANF----ERWIEEEE---VITSFSL 449 (556)
Q Consensus 400 ~--------------~~~v~~v~~s~~----g~~l~~~~~d~~I~i~d~~-----~~~----~~~~~~~~---~i~~v~~ 449 (556)
. ...+..|+++|+ ++.|......+ -++|.+. ... .+..+..+ .-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 125778888887 67766655443 2333322 111 33344443 3345667
Q ss_pred c-CCCCEEEEEEcCCeEEEEEcCC
Q 008717 450 S-KDNKYLLVNLINQEIHLWSIES 472 (556)
Q Consensus 450 s-p~~~~l~~~~~dg~I~lwd~~~ 472 (556)
+ .+|.++++--..+.|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 6787777777888999999876
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=64.69 E-value=1.5e+02 Score=31.51 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=120.3
Q ss_pred EEEEE-EccCCCEEEEE-e----CCCcEEEEEeecCCeeEEEEEec-CCCC------CeEEEEeCCCCCEEEEEe-----
Q 008717 275 VWFLQ-FSHDGKYLASS-S----KDQSAIIWEVKEDGQVSLKHRLS-GHRK------PVFTVSWSPNDHQLLTCG----- 336 (556)
Q Consensus 275 V~~~~-~sp~g~~las~-s----~dg~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~l~~s~~~~~l~s~~----- 336 (556)
...+. ++|++++++.+ | .-..++++|+.++..+. ..+. .-.. ....++|..++..+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~--~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK--NGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT--TCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC--CCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 34455 89999987754 2 22468999998762210 1111 0000 113347763333333321
Q ss_pred -----CCCcEEEEECCCC--cEEEEEecCCCce-EEEEEecCCCe-----EEEEeCC---CcEEEEECCC--CeEEEeec
Q 008717 337 -----QEEAIRRWDVNSG--ECLHVYEKTGVGL-ISCGWFLDGGG-----IFAGMTD---KSICLWDLDG--RELESWKG 398 (556)
Q Consensus 337 -----~dg~i~iwd~~~~--~~~~~~~~~~~~v-~~i~~~~~~~~-----l~~~~~d---g~i~vwd~~~--~~~~~~~~ 398 (556)
....|+.|.+-+. +-...+......+ .+...++++.+ +++.+.+ ..+.+.|... +++..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 1246899988664 2344555443333 33445566663 4443322 3566667652 44444433
Q ss_pred ccCCCeeEEEEccCCCEEEEE----------eCCCeEEEEECCCC--------e-eeeeec--CCceEEEEEcCCCCEEE
Q 008717 399 QKTLRISDMAITDDGKRIISI----------CREAAILLLDREAN--------F-ERWIEE--EEVITSFSLSKDNKYLL 457 (556)
Q Consensus 399 ~~~~~v~~v~~s~~g~~l~~~----------~~d~~I~i~d~~~~--------~-~~~~~~--~~~i~~v~~sp~~~~l~ 457 (556)
... ..+..+.++.+++.. ...+.|...|+.+. . ...+.+ ...+..+.+..+ .+++
T Consensus 289 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSD---ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTT---CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCc---ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 322 123344555554432 24677999998763 1 222333 446778888876 5666
Q ss_pred EEEcCCe--EEEEEcCCCCc-ceeE-EeCc-cCceeEEEEeecCCCCc-EEEEeeC---CCcEEEEEcCCCce
Q 008717 458 VNLINQE--IHLWSIESDPK-LVSR-YKGH-KRARFVIRSCFGGFEQA-FIASGSE---DSQNVPEILLSESV 521 (556)
Q Consensus 458 ~~~~dg~--I~lwd~~~~~~-~~~~-~~~~-~~~~~~i~~~~~s~~~~-~l~sgs~---dg~v~iwd~~~~~~ 521 (556)
+...++. |.++|+.++ . .... +... ...+.. ... ++++. ++++.+. -+.++.+|+. ++.
T Consensus 365 ~~~~~~~~~l~~~~~~~g-~~~~~~~i~lp~~~~~~~--~~~-~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENE-QWTKPVVLKLPYQNAIFG--MSS-YEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp EEEETTEEEEEEECEETT-EECCCEEECCCSTTCEEE--EEC-CTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred EEEECCEEEEEEEECCCC-ceEEEeccCCCCCeEEEE--Eee-cCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 6666764 677777665 3 2333 2222 122222 222 44544 4444433 4678888876 443
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.65 E-value=22 Score=40.43 Aligned_cols=38 Identities=11% Similarity=0.329 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 356 (556)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667788999999999999999999999988765
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.27 E-value=2.1e+02 Score=31.52 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.+.+++..++..++++-+.|+++|+|++.++ +++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~-~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN-QCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTT-EEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCC-CeEeeec
Confidence 4667778888899999999999999999998 7777653
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.78 E-value=1.3e+02 Score=28.15 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=94.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCCeeE------E---EEEecCCCCCeEEEEeCC---CCCEEEEEeCCCc
Q 008717 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS------L---KHRLSGHRKPVFTVSWSP---NDHQLLTCGQEEA 340 (556)
Q Consensus 273 ~~V~~~~~sp~g~~las~s~dg~i~iwd~~~~~~~~------~---~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~ 340 (556)
+.+..+........++..+..|.++-.....-.... . ...+.. ...|.++...+ ++.+++..+.+|.
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 445555555566677777888888777654210000 0 011222 23444443332 4678888999999
Q ss_pred EEEEECCC-------CcEEEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECCC--------CeEEEeecccCCCee
Q 008717 341 IRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------RELESWKGQKTLRIS 405 (556)
Q Consensus 341 i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~ 405 (556)
++...+.. |.....+.. ...+..+....++..++..+.+|.+..+.... .-+..+.-.....|.
T Consensus 126 ~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv 204 (312)
T 1suu_A 126 IARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFV 204 (312)
T ss_dssp EEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEE
T ss_pred EEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEE
Confidence 99888732 222222333 45566666555567788899999998887742 112222222233666
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCC
Q 008717 406 DMAITDDGKRIISICREAAILLLDREA 432 (556)
Q Consensus 406 ~v~~s~~g~~l~~~~~d~~I~i~d~~~ 432 (556)
.+..-.++..+++.+..|..+..++..
T Consensus 205 ~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 205 KVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEECCCCeEEEEECCCceEEEEHHH
Confidence 666655667788889999999988754
No 379
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=55.72 E-value=64 Score=24.39 Aligned_cols=95 Identities=6% Similarity=-0.117 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHH--HHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHH
Q 008717 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQF--MQQVMDGYWDESIITLHMI-GLSDETAVKSASFLIL 137 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~--~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~ 137 (556)
.+...+..+...++...-|..+...+++=..+.-+...+-.. .-....|+|++|+..+... ...+... .+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~--- 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYT--- 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHH---
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHH---
Confidence 355677777777888888999988888866655444432222 2345789999999888764 2212111 1111
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcc
Q 008717 138 EQKFLELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 138 ~q~~~ell~~~~~~~a~~~L~~~l 161 (556)
..-.-+...++..+|+..+++-+
T Consensus 89 -~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 89 -RKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHH
Confidence 11112345688999999988654
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=54.47 E-value=1.6e+02 Score=28.51 Aligned_cols=165 Identities=7% Similarity=0.013 Sum_probs=91.7
Q ss_pred cEEEEEeecCC-eeEEEEEecC----CCCCeEEEEeC---CC----CCEEEEEe-CCCcEEEEECCCCcEEEEEecC---
Q 008717 295 SAIIWEVKEDG-QVSLKHRLSG----HRKPVFTVSWS---PN----DHQLLTCG-QEEAIRRWDVNSGECLHVYEKT--- 358 (556)
Q Consensus 295 ~i~iwd~~~~~-~~~~~~~~~~----h~~~v~~l~~s---~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--- 358 (556)
+|.+||+.+++ +......+.. ....+..+.+. |+ +.++..+. ..+-|.++|+.+++..+....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 58889998762 2222222321 23456777776 22 34444444 3567999999998866654210
Q ss_pred ---------------CCceEEEEEecC----CCeEEEEeCCC-cEEEEEC---CC----CeEEEeeccc-CCCeeEEEEc
Q 008717 359 ---------------GVGLISCGWFLD----GGGIFAGMTDK-SICLWDL---DG----RELESWKGQK-TLRISDMAIT 410 (556)
Q Consensus 359 ---------------~~~v~~i~~~~~----~~~l~~~~~dg-~i~vwd~---~~----~~~~~~~~~~-~~~v~~v~~s 410 (556)
...+..++.+|+ ++.|+.+...+ .++--.. +. ..+..+-... ...-..++++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 235778888887 66676665544 2332221 11 1122221111 1233456675
Q ss_pred -cCCCEEEEEeCCCeEEEEECCC-C----eeeeeecC---CceEEEEEcCCCCEEEEE
Q 008717 411 -DDGKRIISICREAAILLLDREA-N----FERWIEEE---EVITSFSLSKDNKYLLVN 459 (556)
Q Consensus 411 -~~g~~l~~~~~d~~I~i~d~~~-~----~~~~~~~~---~~i~~v~~sp~~~~l~~~ 459 (556)
.+|..+++--..+.|..|+..+ . ......+. ..+..+.+.++|.+.+..
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 6777777777888999999886 2 22332222 346777777666544433
No 381
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=53.20 E-value=37 Score=26.50 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=49.4
Q ss_pred HHHHHhcChHHHHHHHhhhcCcccCCHHHHH--HHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHhc
Q 008717 71 TRALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKFLELLRR 147 (556)
Q Consensus 71 ~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~--~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~~ell~~ 147 (556)
..|++..-|.+|...+++=-.+.-+....-. =.-....|+|++|+..+... .+.+... . .+-..-.-+...
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-----a~~~lg~~~~~~ 94 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-K-----GYIRKAACLVAM 94 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-H-----HHHHHHHHHHHC
Confidence 4466666688888888775444433333222 23344679999999887763 2222211 1 111112223456
Q ss_pred CChHHHHHHHhhcc
Q 008717 148 DKVSAALNSLRSEI 161 (556)
Q Consensus 148 ~~~~~a~~~L~~~l 161 (556)
+++.+|+..+++-+
T Consensus 95 ~~~~~A~~~~~~al 108 (126)
T 4gco_A 95 REWSKAQRAYEDAL 108 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88999999988654
No 382
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=52.42 E-value=81 Score=28.93 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhcC-hHHHHHHHhh--hcCcccCCHHHHHH--HHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHH
Q 008717 63 KSEFIKIITRALYSLG-YDKSGALLEE--ESGIPMHSSVVNQF--MQQVMDGYWDESIITLHMIGLSDETAVKSASFLIL 137 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G-~~~sa~~L~~--Es~i~~~~~~~~~~--~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~ 137 (556)
.-+.++++.+++...| +..+...|++ +.++.-+.+.+... .-....|++++|+..+.. +.... +.+ .+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~---~~~-~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE---CMA-MT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH---HHH-HH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH---HHH-HH
Confidence 4467788888888887 7778888876 33333333333332 334478999999999988 22111 111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHhhc
Q 008717 138 EQKFLELLRRDKVSAALNSLRSE 160 (556)
Q Consensus 138 ~q~~~ell~~~~~~~a~~~L~~~ 160 (556)
..-++..|+..+|...+++-
T Consensus 137 ---~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 ---VQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHCCCHHHHHHHHHHH
Confidence 11233557777777777754
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.92 E-value=62 Score=33.29 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=42.3
Q ss_pred CeeEEEEccCCCEEEEEeC------------CCeEEEEECCCCe-eeeee--cCCceEEEEEcCCCCEEEEEEc
Q 008717 403 RISDMAITDDGKRIISICR------------EAAILLLDREANF-ERWIE--EEEVITSFSLSKDNKYLLVNLI 461 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~------------d~~I~i~d~~~~~-~~~~~--~~~~i~~v~~sp~~~~l~~~~~ 461 (556)
....|+|+++|.+.++... .+.|..++..+++ ..+.. ....++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 5778999999987774332 1267777877777 33332 2467999999999999888753
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.21 E-value=53 Score=34.04 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=41.0
Q ss_pred CeeEEEEccCCCEEEEEeCC------------CeEEEEECCCCe-eeee--ecCCceEEEEEcCCCCEEEEEE
Q 008717 403 RISDMAITDDGKRIISICRE------------AAILLLDREANF-ERWI--EEEEVITSFSLSKDNKYLLVNL 460 (556)
Q Consensus 403 ~v~~v~~s~~g~~l~~~~~d------------~~I~i~d~~~~~-~~~~--~~~~~i~~v~~sp~~~~l~~~~ 460 (556)
..-.|+|+|.|.++++-..+ +.+.+.+..+++ ..+. .....++.++|+||++.|+++-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 45789999999966654332 346677777776 2222 3467899999999999887763
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=48.40 E-value=1.6e+02 Score=26.65 Aligned_cols=141 Identities=10% Similarity=0.027 Sum_probs=75.6
Q ss_pred EEEEEeCCCcEEEEECCCCcE-EEEEecCCCceEEEEEecCCCeEEEEeCCCcEEEEECC------C-Ce-EE-Eeeccc
Q 008717 331 QLLTCGQEEAIRRWDVNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD------G-RE-LE-SWKGQK 400 (556)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~vwd~~------~-~~-~~-~~~~~~ 400 (556)
.+++.+.+|.|+--....-.. ...++. ...+..+........++..+..|.++-+... . +. +. .+.-..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 345556666666554322110 001222 2333333333345566667777876665442 1 11 00 011112
Q ss_pred CCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCe------eeee--ecCCceEEEEEc-CCCCEEEEEEcCCeEEEEEcC
Q 008717 401 TLRISDMAITDDGKRIISICREAAILLLDREANF------ERWI--EEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIE 471 (556)
Q Consensus 401 ~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~~------~~~~--~~~~~i~~v~~s-p~~~~l~~~~~dg~I~lwd~~ 471 (556)
...|.++....++.+++.++..|.++...+.... ...+ .....+..+... .++..++..+.+|.+..+++.
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 2357666443456778889999999999875321 1111 223455555555 345678888889999889875
Q ss_pred C
Q 008717 472 S 472 (556)
Q Consensus 472 ~ 472 (556)
.
T Consensus 163 e 163 (256)
T 1zvt_A 163 D 163 (256)
T ss_dssp G
T ss_pred H
Confidence 4
No 386
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.39 E-value=1.8e+02 Score=27.38 Aligned_cols=228 Identities=10% Similarity=0.046 Sum_probs=122.0
Q ss_pred CEEEEEeCCCcEEEEEeecC------CeeEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEE---ECCC------C
Q 008717 285 KYLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW---DVNS------G 349 (556)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw---d~~~------~ 349 (556)
..+++.+.+|.|+--.+.+- +.-..-..+. ..+.+..+........|+.-+..|.++-. ++.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 35666777777775543210 0000001111 12234444433344555555666665443 3332 2
Q ss_pred cEEEE---EecCCCceEEEEEec---CCCeEEEEeCCCcEEEEECCC------CeEEEeecccCCCeeEEEEccCCCEEE
Q 008717 350 ECLHV---YEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDGKRII 417 (556)
Q Consensus 350 ~~~~~---~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~v~~s~~g~~l~ 417 (556)
..+.. +. ....|..+...+ +..++++.+.+|.|+...+.. +-...+.......+..+........++
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 22111 11 234455554433 578999999999999988742 112222222233566666655667888
Q ss_pred EEeCCCeEEEEECC--CCe--------eee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC------cceeE
Q 008717 418 SICREAAILLLDRE--ANF--------ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP------KLVSR 479 (556)
Q Consensus 418 ~~~~d~~I~i~d~~--~~~--------~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~------~~~~~ 479 (556)
..+..|.+..+... .-. ... ......|.++...+++.+++..+..|.++.-.+..-. +-+..
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88999998888776 211 111 2234567777777777789999999999988864320 11122
Q ss_pred EeCc--cCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcC
Q 008717 480 YKGH--KRARFVIRSCFGGFEQAFIASGSEDSQNVPEILL 517 (556)
Q Consensus 480 ~~~~--~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~ 517 (556)
++-. .+. .+.+.. ..+...|+..+.+|.+.-++..
T Consensus 242 ~~l~~~~d~--lv~~~~-~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 242 VMYDRRRGR--LVGALI-VDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SCCCTTTCS--EEEEEE-ECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEecCCCCe--EEEEEE-eCCCccEEEEcCCCeEEEEehh
Confidence 2211 222 233333 2234456667778887777654
No 387
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=47.17 E-value=3e+02 Score=29.56 Aligned_cols=146 Identities=10% Similarity=0.097 Sum_probs=73.5
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCCeeEEEEEecCC-------CCCeEEEEeCCCC-CEEEEEeCCCc--
Q 008717 272 SDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWSPND-HQLLTCGQEEA-- 340 (556)
Q Consensus 272 ~~~V~~~~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~l~~s~~~-~~l~s~~~dg~-- 340 (556)
.+.|.+++++|. ...++.++..+.|...+- .+..... +..+ ...|.++++.|.. ..++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~---~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIP---LNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEE---SCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeE---CccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 468999999995 455666666666543331 2333322 2222 2469999999843 44444432211
Q ss_pred --EEEE-ECCCCcEEEEEecC---------CCceEEEEEecC-CCeEEEEeCCCcEEEEECCCCe-EEEeec-----ccC
Q 008717 341 --IRRW-DVNSGECLHVYEKT---------GVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE-LESWKG-----QKT 401 (556)
Q Consensus 341 --i~iw-d~~~~~~~~~~~~~---------~~~v~~i~~~~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~-----~~~ 401 (556)
-.|| ..+.|+.-..+... ...+..++++|. .+.++.+...+.|.. ..+.++ -..... ...
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTT
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCC
Confidence 2333 33445543333211 113456788874 456666654444332 222222 111111 111
Q ss_pred CCeeEEEEccC-CCEEEEEeCC
Q 008717 402 LRISDMAITDD-GKRIISICRE 422 (556)
Q Consensus 402 ~~v~~v~~s~~-g~~l~~~~~d 422 (556)
..+..+.++|. +..++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 35788999884 4456665554
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=46.73 E-value=62 Score=33.56 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=42.3
Q ss_pred eEEEEeCCCCCEEEEEeCC------------CcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEE
Q 008717 320 VFTVSWSPNDHQLLTCGQE------------EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAG 377 (556)
Q Consensus 320 v~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~ 377 (556)
.-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999976664432 23566677778776666554 6789999999999887775
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=46.30 E-value=32 Score=36.44 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Q 008717 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 357 (556)
.|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 477999999999999999999999887765
No 390
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=45.73 E-value=65 Score=32.20 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=24.9
Q ss_pred cccccccccccchHHHHHHHHHHHHhcCh
Q 008717 51 DEEKIGSKGVIKKSEFIKIITRALYSLGY 79 (556)
Q Consensus 51 ~~~~~~~~~~i~~~e~~~lI~q~L~e~G~ 79 (556)
+.+.+|..+.....|++.|+.+.|.+.|+
T Consensus 150 g~ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 150 NMDIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp EEEEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 34568998887788999999999999998
No 391
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=45.35 E-value=1.7e+02 Score=26.33 Aligned_cols=142 Identities=5% Similarity=-0.089 Sum_probs=77.6
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEeecccCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCC---e---e---ee--eecC
Q 008717 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN---F---E---RW--IEEE 441 (556)
Q Consensus 373 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~I~i~d~~~~---~---~---~~--~~~~ 441 (556)
..++.+.+|.|+--.................+..+........++..+..|.++-+....- . . .. ....
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 4556677777766554432111111112224555555555556777788888666554321 1 1 11 2234
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEE
Q 008717 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEI 515 (556)
Q Consensus 442 ~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd 515 (556)
..|.++....++.+|+.++..|.++...+..- ......+.... . .+.+.....++..|+..+.+|.+..++
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d-~--lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA-H--VMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTC-C--BCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCC-E--EEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 56777644446678889999999999987431 12223333222 2 222223112455788889999988887
Q ss_pred cC
Q 008717 516 LL 517 (556)
Q Consensus 516 ~~ 517 (556)
..
T Consensus 161 ~~ 162 (256)
T 1zvt_A 161 VS 162 (256)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 392
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.19 E-value=71 Score=27.56 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=60.1
Q ss_pred HHHHHHHHHhccc--------------hHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccc
Q 008717 98 VVNQFMQQVMDGY--------------WDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVP 163 (556)
Q Consensus 98 ~~~~~~~~i~~G~--------------w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~p 163 (556)
.+-+|...|.+|+ ...|+.++..++-..+.+.....-+|..|...=.+++|++.+|...|++.+..
T Consensus 67 ~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 67 YICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 3667777887775 23578888888655557888889999999999999999999999999986655
Q ss_pred cccChhhHHHhhhccccC
Q 008717 164 LQINMSRVHELASCIISP 181 (556)
Q Consensus 164 l~~~~~~~~~l~~~l~~~ 181 (556)
-..++..-..|..++.+.
T Consensus 147 ~~~~~~lr~kL~~II~~K 164 (211)
T 3bqo_A 147 PNSHMPFKSKLLMIISQK 164 (211)
T ss_dssp ---CCTTHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcc
Confidence 444444445555555444
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.39 E-value=47 Score=37.75 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEe
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~ 481 (556)
.+.+++..++..++++-+.|+++++|++.++ +++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~-~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN-QCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT-EEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC-CeEEeec
Confidence 3455666778899999999999999999998 7776653
No 394
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.75 E-value=1.2e+02 Score=31.31 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred CeEEEEeCCCCCEEEEEeC------------CCcEEEEECCCCcEEEEEecC-CCceEEEEEecCCCeEEEEe
Q 008717 319 PVFTVSWSPNDHQLLTCGQ------------EEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGM 378 (556)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~ 378 (556)
....|.|.++|.+.+.... ...+..++..+|+....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567999999987774332 125777777788876666543 46789999999999888764
No 395
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.60 E-value=99 Score=27.08 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccch--------------HHHHHHhhcC---CCCChhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 008717 98 VVNQFMQQVMDGYW--------------DESIITLHMI---GLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSE 160 (556)
Q Consensus 98 ~~~~~~~~i~~G~w--------------~~~~~~l~~l---~~~~~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~ 160 (556)
.+-+|...|.+|+= ..|+.+++.+ ...++.....+.-+|.+|..+=.++++++.+|...|++.
T Consensus 61 ri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 61 RVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 35566666666642 2244444444 344577888899999999999999999999999999987
Q ss_pred ccccccChhhHHHhhhccccCC
Q 008717 161 IVPLQINMSRVHELASCIISPS 182 (556)
Q Consensus 161 l~pl~~~~~~~~~l~~~l~~~~ 182 (556)
+..-..++..-.+|..++.+.+
T Consensus 141 ~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 141 MSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp STTCGGGHHHHHHHHHHHHHTC
T ss_pred hcCCCCchHHHHHHHHHHhccC
Confidence 7653333334445666555543
No 396
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=41.57 E-value=11 Score=27.62 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccC
Q 008717 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~ 95 (556)
++..++.+-|+++|++.| .++..|.++-|++-.
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred cchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 566789999999999999 899999999998764
No 397
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=39.05 E-value=1.1e+02 Score=22.20 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHH--HHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHH
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKF 141 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~--~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~ 141 (556)
....+...++...-|..+...+++=-.+.-+...+.. -.-....|+|++|+..+... ...+... .+ +...-
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~----~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KG----YSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HH----HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HH----HHHHH
Confidence 4455666666777788888877765444333332221 22344679999999888764 2222111 11 11111
Q ss_pred HHHHhcCChHHHHHHHhhcc
Q 008717 142 LELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 142 ~ell~~~~~~~a~~~L~~~l 161 (556)
.-+...++..+|...+++-+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 12335688899999888654
No 398
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=35.42 E-value=29 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHhhhcC
Q 008717 64 SEFIKIITRALYSLGYD-KSGALLEEESG 91 (556)
Q Consensus 64 ~e~~~lI~q~L~e~G~~-~sa~~L~~Es~ 91 (556)
.++...|...|.+.||- .+...+.++.|
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~ 50 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLR 50 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC
Confidence 46777788888899985 34455555554
No 399
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=35.18 E-value=20 Score=19.26 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhc
Q 008717 64 SEFIKIITRALYSL 77 (556)
Q Consensus 64 ~e~~~lI~q~L~e~ 77 (556)
.||++||.||-++.
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999997754
No 400
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=33.09 E-value=69 Score=25.92 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccccccChhhHHHhhh
Q 008717 127 TAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELAS 176 (556)
Q Consensus 127 ~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~~~~~~~~l~~ 176 (556)
.....++|-+.-+-|++|+..|..++|..++.+.-.-.....+.++.|+.
T Consensus 28 ~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~i~~L~~ 77 (138)
T 2j4b_A 28 NDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNKSEEIKQFES 77 (138)
T ss_dssp HHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--CHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhHHHHHHHHhc
Confidence 34556789999999999999999999999998542222222455555544
No 401
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.00 E-value=20 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCCCCCCCCccccccCCCcCCCccccCCcccccccccccccccCCCCCCCcccccccccccchHHHHHHHHHHHHh
Q 008717 1 MGGIEESEPPLKRAKGPVAESKNLAEDSSVKESSVCSLGDVMARPLTSQGDEEKIGSKGVIKKSEFIKIITRALYS 76 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~lI~q~L~e 76 (556)
||| +.-|+..|-| .+...+-+.+..+....|.. |.. .-+++-|++|+...|...
T Consensus 11 ~~~--~~~~a~erER---~Rm~~lN~aF~~LR~~VP~~--------p~~---------kKLSKiEtLr~Ai~YI~~ 64 (68)
T 2lfh_A 11 MGG--GKGPAAEEPL---SLLDDMNHCYSRLRELVPGV--------PRG---------TQLSQVEILQRVIDYILD 64 (68)
T ss_dssp SSC--CCCCCBCCCS---CSSSHHHHHHHHHHHHCCCC--------CTT---------CCCCHHHHHHHHHHHHHH
T ss_pred cCC--CCCCccHHHH---HHHHHHHHHHHHHHHHCCCC--------CCC---------CCccHHHHHHHHHHHHHH
Confidence 676 4446666554 44555666666666555521 111 125889999999988654
No 402
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.38 E-value=1.7e+02 Score=22.29 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCC---HH--HHHHHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHH
Q 008717 63 KSEFIKIITRALYSLGYDKSGALLEEESGIPMHS---SV--VNQFMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLI 136 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~---~~--~~~~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i 136 (556)
-.....+-..++...-|..+...+++=..+.-+. .. ...-......|+|++|+..+... ...+... .+.+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~-- 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALY-- 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHH--
Confidence 4455666666777777888888888766554443 21 11123345789999999888764 2222111 1111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcc
Q 008717 137 LEQKFLELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 137 ~~q~~~ell~~~~~~~a~~~L~~~l 161 (556)
..-.-+...++..+|...+++-+
T Consensus 104 --~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 104 --RRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHH
Confidence 11112334588899999988654
No 403
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.24 E-value=65 Score=34.15 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcceeEEeC
Q 008717 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (556)
Q Consensus 443 ~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~~~~~~~~~ 482 (556)
.|.++.+ +..++++-+.|..+|+||+.++ +++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~-~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSF-TLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTT-EEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCC-ceEEeecc
Confidence 3555544 4779999999999999999998 77766654
No 404
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.14 E-value=3.2e+02 Score=25.26 Aligned_cols=232 Identities=10% Similarity=0.040 Sum_probs=120.7
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCe------eEEEEEecCCCCCeEEEEeCCCCCEEEEEeCCCcEEEEEC---CC----
Q 008717 282 HDGKYLASSSKDQSAIIWEVKEDGQ------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV---NS---- 348 (556)
Q Consensus 282 p~g~~las~s~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~---~~---- 348 (556)
|+...+++.+.+|.|+--.+.+-.. ......+..+ +.+..+........|+..+..|.++-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 3456778888899887665532100 0000112222 23333333334556666677777555543 22
Q ss_pred --CcEEE---EEecCCCceEEEEEe---cCCCeEEEEeCCCcEEEEECCC------CeEEEeecccCCCeeEEEEccCCC
Q 008717 349 --GECLH---VYEKTGVGLISCGWF---LDGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDGK 414 (556)
Q Consensus 349 --~~~~~---~~~~~~~~v~~i~~~---~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~~v~~s~~g~ 414 (556)
|..+. .+. ....|.++... .++.+++..+.+|.++...+.. ..+..+.-.....+..+....+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 22111 122 23445555432 3566799999999999987731 111211111123565555555556
Q ss_pred EEEEEeCCCeEEEEECCCCe--------eee--eecCCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC------cce-
Q 008717 415 RIISICREAAILLLDREANF--------ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP------KLV- 477 (556)
Q Consensus 415 ~l~~~~~d~~I~i~d~~~~~--------~~~--~~~~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~~------~~~- 477 (556)
.++..+.+|.+..++...-. ... ......|.++...+++..+++.+..|.++-.++..-. +-+
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 78888899998888764321 111 2234557677655566788899999999988874320 111
Q ss_pred -eEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEEEcCC
Q 008717 478 -SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPEILLS 518 (556)
Q Consensus 478 -~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iwd~~~ 518 (556)
..+....+. .+.+.... +..-|+..+.+|.+.-.++..
T Consensus 239 ~~~~~~~~~~--lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGL--VVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCS--EEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCe--EEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 112212222 22232212 334455677777776666543
No 405
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=30.29 E-value=2e+02 Score=25.87 Aligned_cols=98 Identities=7% Similarity=-0.028 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHH---H-----HHHHhccchHHHHHHhhcC-CCCChhHHHHHHH
Q 008717 64 SEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQ---F-----MQQVMDGYWDESIITLHMI-GLSDETAVKSASF 134 (556)
Q Consensus 64 ~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~---~-----~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~ 134 (556)
.++...+..++....|.++...+++.-........... + .-....|++++|+..+... .............
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 35567788888889999998888765443322221111 1 1124568999999886642 2111000000011
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcc
Q 008717 135 LILEQKFLELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 135 ~i~~q~~~ell~~~~~~~a~~~L~~~l 161 (556)
.++...-.-+...+++++|+..+++.+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233333344456788889988888765
No 406
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=30.04 E-value=24 Score=24.38 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred cccccccchHHHHHHHHHHHHhcChHH
Q 008717 55 IGSKGVIKKSEFIKIITRALYSLGYDK 81 (556)
Q Consensus 55 ~~~~~~i~~~e~~~lI~q~L~e~G~~~ 81 (556)
+...+.-...|++.||.+.|+.+||..
T Consensus 54 isaendeqakelleliarllqklgykd 80 (96)
T 2jvf_A 54 ISAENDEQAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHTCSE
T ss_pred EEecChHHHHHHHHHHHHHHHHhCCCc
Confidence 344444456799999999999999964
No 407
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=28.84 E-value=1.6e+02 Score=22.03 Aligned_cols=91 Identities=10% Similarity=-0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHH--HHHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHH
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVN--QFMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKF 141 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~--~~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~ 141 (556)
.+..+-..++...-|.++...+++=-.+.-+...+- .=.-....|+|++|+..+... .+.+... .+ +-..-
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~----~~~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RA----YIRKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH----HHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HH----HHHHH
Confidence 344445556666678888888877555444443322 223344789999999888764 2222211 11 11111
Q ss_pred HHHHhcCChHHHHHHHhhcc
Q 008717 142 LELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 142 ~ell~~~~~~~a~~~L~~~l 161 (556)
.-+...++..+|+..+++-+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH
Confidence 22345688899998888654
No 408
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.67 E-value=57 Score=21.54 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHHhcChHHH
Q 008717 61 IKKSEFIKIITRALYSLGYDKS 82 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~s 82 (556)
+..+|...-.++-|+|+||...
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~ 24 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDR 24 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCH
T ss_pred CCHHHhhHHHHHHHHHcCCCcH
Confidence 4556777778999999999543
No 409
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.63 E-value=3e+02 Score=26.93 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHhhhcCc-----ccCCHHHHHHHH-----HHhccchHHHHHHhhcC------CCCChh
Q 008717 64 SEFIKIITRALYSLGYDKSGALLEEESGI-----PMHSSVVNQFMQ-----QVMDGYWDESIITLHMI------GLSDET 127 (556)
Q Consensus 64 ~e~~~lI~q~L~e~G~~~sa~~L~~Es~i-----~~~~~~~~~~~~-----~i~~G~w~~~~~~l~~l------~~~~~~ 127 (556)
+++++.|.++-...-|.++...+++=-.+ .-+++.+....+ ....|+|++|+.+..+. .++++.
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 46777777777776777776666544333 334554443333 34689999999877743 122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhcccc
Q 008717 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVP 163 (556)
Q Consensus 128 ~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~p 163 (556)
..-...+.-+-.. +...|++++|..++++.+..
T Consensus 368 p~~a~~l~nLa~~---~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 368 PVRGVQVMKVGKL---QLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHH
Confidence 2222211111111 23468888888888876533
No 410
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.09 E-value=2.1e+02 Score=25.77 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHhcChHHHHHHHhhhcCcccCCHHHHH--HHHHHhccchHHHHHHhhcC
Q 008717 73 ALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI 121 (556)
Q Consensus 73 ~L~e~G~~~sa~~L~~Es~i~~~~~~~~~--~~~~i~~G~w~~~~~~l~~l 121 (556)
++...-+..+...+++=....-+...... -+-.+..|++++|+..++.+
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44445566666666655444444443322 23445789999999888876
No 411
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=26.93 E-value=42 Score=23.03 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=31.0
Q ss_pred cccccc-chHHHHHHHHHHHHhcChHHHHHHHhhhcCccc
Q 008717 56 GSKGVI-KKSEFIKIITRALYSLGYDKSGALLEEESGIPM 94 (556)
Q Consensus 56 ~~~~~i-~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~ 94 (556)
+.++.| +|+.+.|||.--|.=-||..-|..|..+-+..-
T Consensus 8 ~~~~~iK~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 8 DPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred CchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 333334 578889999999999999999999999987543
No 412
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=26.65 E-value=1.9e+02 Score=23.03 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHH--HHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHH
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKF 141 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~--~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~ 141 (556)
.+..+-..|+...-|..+...+++=..+.-+...+-. =.-....|+|++|+..+... .+.+... .+ +-..-
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~----~~~lg 86 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KA----WSRLG 86 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HH----HHHHH
Confidence 4444555566666688888888776555444443222 23345789999999888764 2222211 11 11111
Q ss_pred HHHHhcCChHHHHHHHhhcc
Q 008717 142 LELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 142 ~ell~~~~~~~a~~~L~~~l 161 (556)
.-+...+++.+|+..+++-+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 22345688999999988654
No 413
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=26.20 E-value=48 Score=27.63 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhcChHHHHHH-----HhhhcCcccC
Q 008717 63 KSEFIKIITRALYSLGYDKSGAL-----LEEESGIPMH 95 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G~~~sa~~-----L~~Es~i~~~ 95 (556)
.++..+-|++||...||+..+.+ ++.|||+...
T Consensus 14 ~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 44567799999999999988754 8999997543
No 414
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.12 E-value=98 Score=26.08 Aligned_cols=60 Identities=3% Similarity=0.029 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHHHhcChHH-HHHHHhhhcCcccCC-----HHHHHHHHHHhccchHHHHHHhhc
Q 008717 61 IKKSEFIKIITRALYSLGYDK-SGALLEEESGIPMHS-----SVVNQFMQQVMDGYWDESIITLHM 120 (556)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~-sa~~L~~Es~i~~~~-----~~~~~~~~~i~~G~w~~~~~~l~~ 120 (556)
-++++|+.--.+-+.+.||.. |...+-+++|++..+ ...+.+...++.-.++.....+..
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 81 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITA 81 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999986 899999999997533 356666666666555555555554
No 415
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=26.03 E-value=2e+02 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhcCh
Q 008717 63 KSEFIKIITRALYSLGY 79 (556)
Q Consensus 63 ~~e~~~lI~q~L~e~G~ 79 (556)
.+|=.|.|++.+++.|-
T Consensus 37 TRe~DR~IL~~cQ~~G~ 53 (95)
T 1ug2_A 37 TREADRVILTMCQEQGA 53 (95)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHhcCC
Confidence 45789999999999986
No 416
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.99 E-value=3.2e+02 Score=27.34 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhh--hcCcccCCHHHH-HHHHHHhccchHHHHHHhhcC---CCCChhHHHHHHHHHHH
Q 008717 65 EFIKIITRALYSLGYDKSGALLEE--ESGIPMHSSVVN-QFMQQVMDGYWDESIITLHMI---GLSDETAVKSASFLILE 138 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~--Es~i~~~~~~~~-~~~~~i~~G~w~~~~~~l~~l---~~~~~~~~~~~~~~i~~ 138 (556)
=.+-||--|.+..-+..+...|++ +.|+..+...-. .+......|++++|.++++.+ ++.++. ..|..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~----~ty~~L- 181 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE----PELAAL- 181 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH----HHHHHH-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH----HHHHHH-
Confidence 345567777777777777777764 677766654433 344556789999999988876 233321 111111
Q ss_pred HHHHHHHhcCChHHHHHHHhh
Q 008717 139 QKFLELLRRDKVSAALNSLRS 159 (556)
Q Consensus 139 q~~~ell~~~~~~~a~~~L~~ 159 (556)
+--+...|+.++|+.+|++
T Consensus 182 --i~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 182 --LKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp --HHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHhhCCCHHHHHHHHHH
Confidence 1122345888888888874
No 417
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=25.44 E-value=2e+02 Score=23.84 Aligned_cols=85 Identities=8% Similarity=-0.005 Sum_probs=44.8
Q ss_pred HHHHHhcChHHHHHHHhhhcCcccCCH----------------H--HHHHHHHHhccchHHHHHHhhcC-CCCChhHHHH
Q 008717 71 TRALYSLGYDKSGALLEEESGIPMHSS----------------V--VNQFMQQVMDGYWDESIITLHMI-GLSDETAVKS 131 (556)
Q Consensus 71 ~q~L~e~G~~~sa~~L~~Es~i~~~~~----------------~--~~~~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~ 131 (556)
..++...-|..+...+++=..+.-+.+ . ...=......|+|++|+..+... .+.+... .
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 123 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV--K 123 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH--H
Confidence 344455557777777665443322211 1 11113345789999999888764 2222111 1
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhhcc
Q 008717 132 ASFLILEQKFLELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 132 ~~~~i~~q~~~ell~~~~~~~a~~~L~~~l 161 (556)
+.+. .-.-+...+++.+|+..+++-+
T Consensus 124 ~~~~----lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 124 ALYK----LGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH----HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHcccHHHHHHHHHHHH
Confidence 1111 1112345688889998888654
No 418
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=24.70 E-value=4e+02 Score=24.32 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHhcC-hHHHHHHHhhhcCcccCCHHHHHHH---HHHhccchHHHHHHhhcCC-CCChhHHHHHHHHH
Q 008717 62 KKSEFIKIITRALYSLG-YDKSGALLEEESGIPMHSSVVNQFM---QQVMDGYWDESIITLHMIG-LSDETAVKSASFLI 136 (556)
Q Consensus 62 ~~~e~~~lI~q~L~e~G-~~~sa~~L~~Es~i~~~~~~~~~~~---~~i~~G~w~~~~~~l~~l~-~~~~~~~~~~~~~i 136 (556)
++.++--.-...|.+.| |.++...|+.=. ..++..+..|. -+...|+|++|+..+.... .++......+.|.+
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAP--VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSC--CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 67888887788888877 888888775322 22333333332 3458899999999998653 23322112222222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcc
Q 008717 137 LEQKFLELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 137 ~~q~~~ell~~~~~~~a~~~L~~~l 161 (556)
- .-+...|+..+|+..+++-+
T Consensus 178 -G---~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 178 -G---VAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp -H---HHHHHTTCHHHHHHHHHHHH
T ss_pred -H---HHHHHCCCHHHHHHHHHHHh
Confidence 1 12345689999999999654
No 419
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=24.14 E-value=39 Score=25.69 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred cccchHHHHHHHHHHHHhcChHH
Q 008717 59 GVIKKSEFIKIITRALYSLGYDK 81 (556)
Q Consensus 59 ~~i~~~e~~~lI~q~L~e~G~~~ 81 (556)
..++|.||+..||+|-+++++.+
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBC
T ss_pred cccCHHHHHHHHHHHHHhhcCcC
Confidence 45899999999999999999764
No 420
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=23.76 E-value=1.3e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhccccccc--ChhhHHHhhhc
Q 008717 127 TAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQI--NMSRVHELASC 177 (556)
Q Consensus 127 ~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~--~~~~~~~l~~~ 177 (556)
.....++|-+.-+-|++|+..|...+|..++.+. .+.-. ..+.++.|+.+
T Consensus 47 ~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f-~~~~~~~~~~~i~~L~~i 98 (156)
T 2nxp_A 47 AELSQLFYPLFVHMYLELVYNQHENEAKSFFEKF-HGDQECYYQDDLRVLSSL 98 (156)
T ss_dssp HHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH-GGGSCGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-hHHhHHHHHHHHHHHhcC
Confidence 3455678999999999999999999999999854 44432 34555565543
No 421
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=23.62 E-value=2.1e+02 Score=20.69 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcChHHHHHHHhhhcCcccCCHHH--HHHHHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHH
Q 008717 67 IKIITRALYSLGYDKSGALLEEESGIPMHSSVV--NQFMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKFLE 143 (556)
Q Consensus 67 ~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~--~~~~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~~e 143 (556)
..+...|+...-|..+...+++=....-+.... ..-.-....|++++|+..+... ...+... .+.+ ..-.-
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~la~~ 86 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWY----NLGNA 86 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH----HHHHH
Confidence 344445555556777777776644333233321 1223345789999999888764 1111111 1111 11112
Q ss_pred HHhcCChHHHHHHHhhcc
Q 008717 144 LLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 144 ll~~~~~~~a~~~L~~~l 161 (556)
+...++..+|...+++-+
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 235688889998888643
No 422
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=22.60 E-value=1.5e+02 Score=22.55 Aligned_cols=91 Identities=14% Similarity=0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHH--HHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHH
Q 008717 65 EFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQF--MQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKF 141 (556)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~--~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~ 141 (556)
+...+-..+++..-|..+...|++=..+.-+....... .-....|++++|+..+.+. .+.++.. .+.+. .-
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~----la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAA----LA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH----HH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH----HH
Confidence 34556667777777888888887766555444433322 2344689999999888764 3222211 11111 11
Q ss_pred HHHHhcCChHHHHHHHhhcc
Q 008717 142 LELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 142 ~ell~~~~~~~a~~~L~~~l 161 (556)
.-+...|+..+|+..+++-+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 12234466778888887543
No 423
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=22.02 E-value=70 Score=26.04 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHH
Q 008717 56 GSKGVIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFL 135 (556)
Q Consensus 56 ~~~~~i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~ 135 (556)
|+=+.-.-++|-.-|.++|.+.+.-.-+..+.-+. -......=......|++++|+..+...-..+.....
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~l~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----- 71 (151)
T 3gyz_A 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDM----MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----- 71 (151)
T ss_dssp --------CHHHHHHHHHHHTSCCTGGGCCSCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCHHHHhCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccccccChhhHHHhhhcc
Q 008717 136 ILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCI 178 (556)
Q Consensus 136 i~~q~~~ell~~~~~~~a~~~L~~~l~pl~~~~~~~~~l~~~l 178 (556)
.+-..-.-+...+++.+|+..+++-+.--..++.....++.++
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
No 424
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.62 E-value=4.6e+02 Score=27.64 Aligned_cols=75 Identities=5% Similarity=-0.022 Sum_probs=45.2
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEEcCCC------CcceeEEeCccCceeEEEEeecCCCCcEEEEeeCCCcEEEE
Q 008717 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQNVPE 514 (556)
Q Consensus 441 ~~~i~~v~~sp~~~~l~~~~~dg~I~lwd~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~sgs~dg~v~iw 514 (556)
...|..+...+++.+++.++..|.++...+... +...-.+.....- +.+......+..|+..+.+|.+..|
T Consensus 553 ~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~l---v~~~~~~~~~~~v~l~t~~g~~lrf 629 (716)
T 1zvu_A 553 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV---MPPVVIEDASDMLLAITQAGRMLMF 629 (716)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCB---CCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEE---EEEEEecCCCCEEEEEeCCCeEEEE
Confidence 445666554556788999999999998887432 1122233322222 2222211234578889999999999
Q ss_pred EcCC
Q 008717 515 ILLS 518 (556)
Q Consensus 515 d~~~ 518 (556)
+...
T Consensus 630 ~~~~ 633 (716)
T 1zvu_A 630 PVSD 633 (716)
T ss_dssp ESTT
T ss_pred EHHH
Confidence 7753
No 425
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=21.35 E-value=2.6e+02 Score=21.99 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHH--HHHHhccchHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHH
Q 008717 66 FIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQF--MQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKFL 142 (556)
Q Consensus 66 ~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~--~~~i~~G~w~~~~~~l~~l-~~~~~~~~~~~~~~i~~q~~~ 142 (556)
+..+-..++...-|.++...+++=..+.-+....-.. .-....|+|++|+..+... .+.+... .+.|. .-.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~----lg~ 97 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--RFPFH----AAE 97 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHH----HHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHH----HHH
Confidence 3444555556666888888877644444444332221 3345789999999888764 2222111 11111 112
Q ss_pred HHHhcCChHHHHHHHhhcc
Q 008717 143 ELLRRDKVSAALNSLRSEI 161 (556)
Q Consensus 143 ell~~~~~~~a~~~L~~~l 161 (556)
-+...|+..+|+..+++-+
T Consensus 98 ~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 2346789999999988653
No 426
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=20.69 E-value=1.6e+02 Score=29.38 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=25.1
Q ss_pred cccccccccccc--hHHHHHHHHHHHHhcChH
Q 008717 51 DEEKIGSKGVIK--KSEFIKIITRALYSLGYD 80 (556)
Q Consensus 51 ~~~~~~~~~~i~--~~e~~~lI~q~L~e~G~~ 80 (556)
..+.+|..+... .-|++.|+...|.+.|+.
T Consensus 147 g~ei~G~~~~~a~~DaEvi~l~~~~l~~lgl~ 178 (465)
T 3net_A 147 DIDVVGREKLSLLYDAQMPAIITEIFEAVNIG 178 (465)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCccchhhHHHHHHHHHHHHHcCCC
Confidence 344689988877 789999999999999974
No 427
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=20.43 E-value=2.6e+02 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 008717 126 ETAVKSASFLILEQKFLELLRRDKVSAALNSLRSE 160 (556)
Q Consensus 126 ~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~~ 160 (556)
......++|-+.-+-|++|+..+ ..+|..++.+.
T Consensus 29 k~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f 62 (148)
T 2j49_A 29 KPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRF 62 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 45667789999999999999999 99999999853
No 428
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.32 E-value=2.8e+02 Score=20.91 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 008717 60 VIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQ 139 (556)
Q Consensus 60 ~i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q 139 (556)
.+|-.+|.+=|-++|...+...+. |-+.|+.-.=...-++|..-+.-.....++-...+.-+
T Consensus 16 ~ldTk~I~~~ike~L~~~~isQ~~------------------FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~ 77 (101)
T 1x2l_A 16 QLDTAEIAFQVKEQLLKHNIGQRV------------------FGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMK 77 (101)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHH------------------HHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHcCCCHHH------------------HHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHH
Confidence 378999999999999999876653 34444432222333444443332322223333445555
Q ss_pred HHHHHHhcCChHHHHHHHh
Q 008717 140 KFLELLRRDKVSAALNSLR 158 (556)
Q Consensus 140 ~~~ell~~~~~~~a~~~L~ 158 (556)
.++++ .+..+++.+++
T Consensus 78 nWL~~---~er~~~Lr~~~ 93 (101)
T 1x2l_A 78 QFLSD---EQNVLALRTIQ 93 (101)
T ss_dssp HHHTC---THHHHHHHHHH
T ss_pred HHccC---HHHHHHHHHhh
Confidence 56664 24445555553
No 429
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1.7e+02 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHhccchHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhh
Q 008717 96 SSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRS 159 (556)
Q Consensus 96 ~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~~ell~~~~~~~a~~~L~~ 159 (556)
...-.+|--+|..|+++.|.++.+.+..+. ..++---+.+..+++.-|-.++++
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~----------~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLNDSI----------TWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCCHH----------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCCHH----------HHHHHHHHHHHcCChHHHHHHHHH
Confidence 344678999999999999999988763211 444445556667777777777763
Done!