Query 008718
Match_columns 556
No_of_seqs 356 out of 3650
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 15:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 3.1E-42 6.6E-47 350.3 41.1 440 24-555 397-851 (890)
2 PRK10490 sensor protein KdpD; 100.0 1.9E-33 4.1E-38 311.0 43.3 359 125-556 494-855 (895)
3 COG3275 LytS Putative regulato 100.0 4.8E-32 1E-36 259.2 33.7 404 25-556 105-521 (557)
4 TIGR02916 PEP_his_kin putative 100.0 9.9E-30 2.1E-34 276.9 43.7 361 125-556 284-653 (679)
5 PRK13837 two-component VirA-li 100.0 1.4E-29 3E-34 281.4 42.4 385 125-556 258-648 (828)
6 PRK11091 aerobic respiration c 100.0 2E-30 4.4E-35 288.2 33.0 200 338-556 277-478 (779)
7 PRK10618 phosphotransfer inter 100.0 6.2E-30 1.3E-34 280.1 25.3 214 326-556 432-645 (894)
8 PRK09303 adaptive-response sen 100.0 2.7E-29 5.8E-34 254.6 25.1 207 329-556 136-350 (380)
9 COG5002 VicK Signal transducti 100.0 1.5E-30 3.2E-35 239.3 12.2 199 339-556 220-421 (459)
10 PRK10841 hybrid sensory kinase 100.0 8.8E-29 1.9E-33 275.2 24.5 212 325-556 428-640 (924)
11 COG4251 Bacteriophytochrome (l 100.0 6.4E-27 1.4E-31 231.2 33.6 205 327-556 507-714 (750)
12 PRK11107 hybrid sensory histid 100.0 9E-26 1.9E-30 256.5 43.7 211 331-556 280-491 (919)
13 TIGR02956 TMAO_torS TMAO reduc 100.0 9.9E-28 2.1E-32 273.8 26.1 205 332-556 452-656 (968)
14 PRK15347 two component system 100.0 2.3E-27 4.9E-32 269.6 25.6 211 323-556 377-587 (921)
15 COG4191 Signal transduction hi 100.0 1.4E-26 3E-31 229.5 24.3 186 343-556 383-574 (603)
16 PRK11466 hybrid sensory histid 100.0 1.5E-26 3.3E-31 262.2 26.7 213 321-556 421-635 (914)
17 PRK11006 phoR phosphate regulo 99.9 2.4E-25 5.3E-30 230.5 31.5 191 344-556 204-396 (430)
18 COG3852 NtrB Signal transducti 99.9 2E-26 4.3E-31 209.3 16.8 193 343-556 131-328 (363)
19 PRK09959 hybrid sensory histid 99.9 4E-24 8.7E-29 248.8 33.9 212 329-556 697-909 (1197)
20 PRK10364 sensor protein ZraS; 99.9 1.7E-22 3.6E-27 211.1 39.6 185 342-556 235-421 (457)
21 PRK10604 sensor protein RstB; 99.9 1.7E-24 3.7E-29 223.9 21.6 204 324-556 192-396 (433)
22 PRK10815 sensor protein PhoQ; 99.9 5.6E-24 1.2E-28 221.9 22.7 204 326-556 248-451 (485)
23 TIGR02938 nifL_nitrog nitrogen 99.9 7.1E-24 1.5E-28 224.1 23.2 191 342-556 274-467 (494)
24 TIGR03785 marine_sort_HK prote 99.9 9.6E-24 2.1E-28 228.8 23.5 213 322-556 463-676 (703)
25 COG5000 NtrY Signal transducti 99.9 5.3E-23 1.1E-27 203.3 26.1 182 345-556 487-680 (712)
26 PRK10755 sensor protein BasS/P 99.9 2E-23 4.3E-28 210.9 20.8 185 344-556 137-322 (356)
27 PRK10549 signal transduction h 99.9 6.5E-23 1.4E-27 215.2 22.6 214 321-556 217-431 (466)
28 TIGR01386 cztS_silS_copS heavy 99.9 1.1E-22 2.4E-27 212.9 22.7 212 321-556 218-432 (457)
29 PRK10337 sensor protein QseC; 99.9 1.9E-22 4.1E-27 210.6 23.4 209 322-556 215-424 (449)
30 PRK09835 sensor kinase CusS; P 99.9 4.9E-22 1.1E-26 209.5 24.0 212 322-556 240-454 (482)
31 TIGR02966 phoR_proteo phosphat 99.9 3.4E-22 7.3E-27 200.0 20.3 192 344-556 114-308 (333)
32 PRK11100 sensory histidine kin 99.9 6.8E-22 1.5E-26 208.0 22.6 191 343-556 255-446 (475)
33 PRK11073 glnL nitrogen regulat 99.9 8.8E-22 1.9E-26 198.3 21.1 191 343-556 129-321 (348)
34 PRK09470 cpxA two-component se 99.9 2.1E-21 4.5E-26 203.5 22.8 210 321-556 220-430 (461)
35 PRK09467 envZ osmolarity senso 99.9 1.4E-21 3E-26 203.2 21.2 201 321-556 206-406 (435)
36 PRK10600 nitrate/nitrite senso 99.9 2.3E-18 5.1E-23 184.5 41.5 329 123-556 199-529 (569)
37 COG4192 Signal transduction hi 99.9 3.3E-20 7.2E-25 176.9 23.3 185 344-555 451-638 (673)
38 PRK11360 sensory histidine kin 99.8 5.5E-20 1.2E-24 199.5 22.5 185 343-556 389-574 (607)
39 COG3850 NarQ Signal transducti 99.8 6.2E-17 1.3E-21 158.8 39.1 350 67-525 159-527 (574)
40 PRK11644 sensory histidine kin 99.8 1E-18 2.2E-23 182.4 27.4 223 288-556 245-469 (495)
41 COG0642 BaeS Signal transducti 99.8 4.7E-19 1E-23 176.7 22.3 188 343-556 114-302 (336)
42 PRK13557 histidine kinase; Pro 99.8 9.1E-19 2E-23 187.4 21.2 200 343-556 162-367 (540)
43 PRK13560 hypothetical protein; 99.8 4.7E-18 1E-22 190.9 20.0 183 331-556 592-778 (807)
44 COG3290 CitA Signal transducti 99.8 4.4E-15 9.6E-20 147.4 35.1 166 347-556 336-504 (537)
45 PRK11086 sensory histidine kin 99.7 1.1E-15 2.4E-20 163.7 25.7 164 346-556 341-508 (542)
46 PRK15053 dpiB sensor histidine 99.7 1.2E-15 2.6E-20 163.4 19.0 166 347-556 341-512 (545)
47 KOG0519 Sensory transduction h 99.7 1.2E-17 2.7E-22 181.3 0.8 554 2-555 30-606 (786)
48 PRK10935 nitrate/nitrite senso 99.7 3.3E-12 7.1E-17 137.6 41.5 213 271-556 314-532 (565)
49 COG3851 UhpB Signal transducti 99.6 8.1E-13 1.8E-17 123.3 25.6 209 290-526 248-457 (497)
50 PRK13559 hypothetical protein; 99.6 5E-14 1.1E-18 142.7 15.3 159 344-556 170-332 (361)
51 COG4564 Signal transduction hi 99.5 4E-10 8.7E-15 104.2 32.5 157 340-526 247-406 (459)
52 PF02518 HATPase_c: Histidine 99.4 4.3E-14 9.2E-19 116.8 3.1 82 455-556 1-83 (111)
53 COG4585 Signal transduction hi 99.4 5E-11 1.1E-15 120.5 23.9 157 342-527 169-327 (365)
54 PRK15429 formate hydrogenlyase 99.3 1.9E-10 4.1E-15 125.4 24.4 185 129-327 170-361 (686)
55 PRK11061 fused phosphoenolpyru 99.2 1.1E-09 2.4E-14 118.7 23.2 161 143-317 2-164 (748)
56 PRK10547 chemotaxis protein Ch 99.2 2.3E-10 5E-15 121.3 16.1 117 417-556 343-496 (670)
57 COG2972 Predicted signal trans 99.2 1E-09 2.2E-14 113.9 20.6 161 338-556 258-423 (456)
58 COG3920 Signal transduction hi 99.2 2.3E-09 4.9E-14 98.8 19.9 153 344-526 19-175 (221)
59 PF00512 HisKA: His Kinase A ( 99.2 3.5E-10 7.6E-15 84.0 10.0 65 344-408 2-68 (68)
60 TIGR01817 nifA Nif-specific re 99.1 4.2E-09 9.1E-14 111.6 19.7 162 142-317 3-166 (534)
61 PRK14868 DNA topoisomerase VI 99.0 4.9E-10 1.1E-14 116.8 7.3 82 436-537 22-108 (795)
62 PF13492 GAF_3: GAF domain; PD 99.0 7.5E-09 1.6E-13 87.7 12.9 129 158-309 1-129 (129)
63 PRK04184 DNA topoisomerase VI 98.9 1E-09 2.2E-14 112.3 5.7 83 456-555 33-122 (535)
64 TIGR01925 spIIAB anti-sigma F 98.9 3.9E-09 8.4E-14 90.6 7.0 76 456-556 36-115 (137)
65 PRK15429 formate hydrogenlyase 98.8 1.5E-07 3.2E-12 102.9 19.3 172 143-329 8-183 (686)
66 TIGR01052 top6b DNA topoisomer 98.8 5E-09 1.1E-13 106.1 6.6 83 454-555 23-112 (488)
67 PF01590 GAF: GAF domain; Int 98.8 2.7E-08 5.9E-13 87.1 9.8 136 158-307 1-154 (154)
68 smart00387 HATPase_c Histidine 98.7 2.1E-08 4.6E-13 82.0 6.1 81 455-555 1-82 (111)
69 PRK04069 serine-protein kinase 98.7 2.2E-08 4.7E-13 88.1 6.4 80 456-556 39-122 (161)
70 PRK05022 anaerobic nitric oxid 98.7 7.4E-07 1.6E-11 93.7 18.9 170 143-327 3-176 (509)
71 KOG0519 Sensory transduction h 98.7 5.8E-09 1.3E-13 114.1 2.2 207 347-555 224-460 (786)
72 PRK03660 anti-sigma F factor; 98.7 4.3E-08 9.3E-13 85.2 6.5 76 456-556 36-115 (146)
73 COG0643 CheA Chemotaxis protei 98.6 2.6E-07 5.5E-12 98.9 11.7 141 385-556 366-546 (716)
74 smart00065 GAF Domain present 98.6 1.2E-06 2.6E-11 75.0 13.6 144 158-315 1-147 (149)
75 COG3605 PtsP Signal transducti 98.6 4.7E-06 1E-10 83.6 18.7 154 146-313 5-160 (756)
76 PRK14867 DNA topoisomerase VI 98.6 7.1E-08 1.5E-12 100.8 5.9 80 457-555 34-120 (659)
77 PF13185 GAF_2: GAF domain; PD 98.6 5E-07 1.1E-11 78.4 10.2 134 158-308 3-148 (148)
78 TIGR01924 rsbW_low_gc serine-p 98.5 1.8E-07 4E-12 81.9 6.8 80 456-556 39-122 (159)
79 cd00075 HATPase_c Histidine ki 98.5 1.8E-07 4E-12 75.1 4.7 76 460-556 1-78 (103)
80 smart00388 HisKA His Kinase A 98.4 2.4E-06 5.2E-11 62.4 8.5 63 344-406 2-64 (66)
81 KOG0787 Dehydrogenase kinase [ 98.2 0.0002 4.2E-09 68.6 18.0 158 377-555 172-352 (414)
82 COG3604 FhlA Transcriptional r 98.1 8.9E-05 1.9E-09 74.0 15.6 175 143-331 33-212 (550)
83 TIGR00585 mutl DNA mismatch re 98.1 3.9E-06 8.5E-11 82.5 6.4 61 458-540 21-81 (312)
84 cd00082 HisKA Histidine Kinase 98.0 3.9E-05 8.4E-10 55.5 8.4 61 344-404 4-65 (65)
85 PF13581 HATPase_c_2: Histidin 98.0 1.1E-05 2.4E-10 67.8 6.1 74 456-555 28-105 (125)
86 COG1389 DNA topoisomerase VI, 97.8 1.4E-05 3.1E-10 78.0 4.2 62 456-536 33-98 (538)
87 PRK13558 bacterio-opsin activa 97.8 0.00084 1.8E-08 73.9 18.6 146 145-310 289-438 (665)
88 TIGR02851 spore_V_T stage V sp 97.8 0.0003 6.5E-09 62.4 11.9 126 156-307 51-179 (180)
89 COG2203 FhlA FOG: GAF domain [ 97.8 2.2E-05 4.8E-10 69.4 4.9 159 143-315 3-170 (175)
90 COG2172 RsbW Anti-sigma regula 97.7 0.0001 2.2E-09 63.1 6.9 76 456-556 37-117 (146)
91 PRK00095 mutL DNA mismatch rep 97.4 0.00028 6.2E-09 75.7 6.1 61 458-540 21-81 (617)
92 PF13589 HATPase_c_3: Histidin 97.3 3.7E-05 8.1E-10 65.6 -1.4 59 461-539 4-62 (137)
93 PF14501 HATPase_c_5: GHKL dom 96.9 0.0025 5.3E-08 51.1 6.3 72 456-556 2-75 (100)
94 COG1956 GAF domain-containing 96.8 0.053 1.1E-06 46.0 13.5 124 161-306 35-159 (163)
95 COG0323 MutL DNA mismatch repa 96.8 0.0011 2.3E-08 71.1 3.7 60 459-540 23-82 (638)
96 PF11849 DUF3369: Domain of un 96.6 0.13 2.7E-06 45.8 15.2 147 135-317 13-172 (174)
97 PRK05559 DNA topoisomerase IV 96.5 0.0018 3.8E-08 69.5 3.5 78 456-554 34-125 (631)
98 PF07568 HisKA_2: Histidine ki 96.3 0.06 1.3E-06 40.3 9.7 73 351-432 2-74 (76)
99 PRK05644 gyrB DNA gyrase subun 96.0 0.0085 1.8E-07 64.4 5.4 50 456-528 34-86 (638)
100 PF04340 DUF484: Protein of un 96.0 0.073 1.6E-06 49.6 10.7 161 123-309 53-222 (225)
101 PRK14083 HSP90 family protein; 95.6 0.01 2.3E-07 63.0 3.9 49 462-531 26-83 (601)
102 TIGR01055 parE_Gneg DNA topois 95.5 0.0078 1.7E-07 64.5 2.6 49 460-531 31-90 (625)
103 TIGR01059 gyrB DNA gyrase, B s 95.4 0.017 3.7E-07 62.6 4.5 51 456-527 27-78 (654)
104 PRK05218 heat shock protein 90 95.3 0.015 3.3E-07 62.4 3.7 21 512-532 74-94 (613)
105 PTZ00272 heat shock protein 83 94.9 0.04 8.8E-07 59.4 5.5 20 511-530 72-91 (701)
106 COG0326 HtpG Molecular chapero 94.6 0.035 7.5E-07 58.0 3.9 19 511-529 74-92 (623)
107 smart00433 TOP2c Topoisomerase 94.5 0.012 2.7E-07 62.9 0.5 48 460-528 2-50 (594)
108 TIGR01058 parE_Gpos DNA topois 94.1 0.049 1.1E-06 58.5 4.0 50 456-526 31-81 (637)
109 PRK14939 gyrB DNA gyrase subun 93.7 0.069 1.5E-06 58.1 4.3 48 458-526 36-84 (756)
110 PHA02569 39 DNA topoisomerase 93.7 0.051 1.1E-06 57.9 3.2 16 512-527 80-95 (602)
111 COG5381 Uncharacterized protei 93.5 0.18 3.9E-06 41.7 5.3 32 458-489 62-93 (184)
112 PF06580 His_kinase: Histidine 93.3 0.6 1.3E-05 35.6 7.8 76 341-443 5-80 (82)
113 PLN03128 DNA topoisomerase 2; 93.1 0.14 3E-06 58.4 5.6 50 458-527 51-102 (1135)
114 PLN03237 DNA topoisomerase 2; 92.0 0.19 4.1E-06 58.0 4.9 49 459-527 77-127 (1465)
115 PTZ00108 DNA topoisomerase 2-l 92.0 0.22 4.8E-06 57.6 5.5 49 459-527 57-110 (1388)
116 COG0187 GyrB Type IIA topoisom 91.9 0.049 1.1E-06 56.6 0.2 47 458-527 35-84 (635)
117 PTZ00109 DNA gyrase subunit b; 91.4 0.051 1.1E-06 59.3 -0.3 51 457-527 127-177 (903)
118 KOG1978 DNA mismatch repair pr 91.4 0.22 4.9E-06 52.2 4.2 57 460-538 21-77 (672)
119 PF14689 SPOB_a: Sensor_kinase 91.0 1.4 3.1E-05 31.4 6.9 44 347-394 15-58 (62)
120 PTZ00130 heat shock protein 90 90.9 0.16 3.4E-06 55.4 2.7 18 512-529 136-153 (814)
121 KOG1979 DNA mismatch repair pr 90.6 0.33 7.1E-06 49.8 4.4 59 459-539 27-85 (694)
122 PF06018 CodY: CodY GAF-like d 89.2 7 0.00015 34.5 11.0 43 268-311 115-157 (177)
123 COG5385 Uncharacterized protei 88.5 15 0.00033 31.5 12.6 123 347-486 18-140 (214)
124 PRK10963 hypothetical protein; 87.6 24 0.00051 32.8 17.4 159 123-308 50-217 (223)
125 KOG1977 DNA mismatch repair pr 87.1 0.84 1.8E-05 48.0 4.6 58 458-538 20-77 (1142)
126 PRK04158 transcriptional repre 83.3 40 0.00087 31.6 17.2 43 268-311 117-159 (256)
127 PF07730 HisKA_3: Histidine ki 81.3 17 0.00037 26.0 8.4 48 344-391 2-51 (68)
128 PF07536 HWE_HK: HWE histidine 79.7 8 0.00017 29.4 6.3 70 351-432 2-71 (83)
129 COG4465 CodY Pleiotropic trans 76.5 59 0.0013 29.4 15.7 42 268-310 120-161 (261)
130 COG5393 Predicted membrane pro 75.1 42 0.00091 27.0 9.0 33 71-107 71-103 (131)
131 KOG0355 DNA topoisomerase type 74.4 6.6 0.00014 42.7 5.9 51 457-527 51-102 (842)
132 PF10090 DUF2328: Uncharacteri 74.2 65 0.0014 28.8 14.1 128 360-522 2-129 (182)
133 PF10066 DUF2304: Uncharacteri 74.0 42 0.00091 27.4 9.5 8 40-47 20-27 (115)
134 PF05297 Herpes_LMP1: Herpesvi 67.0 1.8 3.9E-05 40.3 0.0 33 16-48 36-76 (381)
135 PF11152 DUF2930: Protein of u 66.9 79 0.0017 28.5 10.2 74 210-303 120-194 (195)
136 TIGR02787 codY_Gpos GTP-sensin 64.8 1.2E+02 0.0026 28.2 16.5 43 268-311 114-156 (251)
137 PF07495 Y_Y_Y: Y_Y_Y domain; 62.7 9 0.0002 27.4 3.0 43 242-284 2-52 (66)
138 KOG3689 Cyclic nucleotide phos 61.3 63 0.0014 35.2 10.0 168 142-322 165-345 (707)
139 PF05884 ZYG-11_interact: Inte 60.0 45 0.00098 31.9 7.7 63 26-90 139-202 (299)
140 COG3159 Uncharacterized protei 59.7 1.4E+02 0.003 27.2 14.0 65 123-187 51-119 (218)
141 PF10966 DUF2768: Protein of u 59.5 18 0.00039 25.2 3.7 41 26-66 5-46 (58)
142 COG1620 LldP L-lactate permeas 55.9 62 0.0013 33.7 8.5 75 26-111 184-259 (522)
143 PF07851 TMPIT: TMPIT-like pro 54.7 2.2E+02 0.0048 28.0 13.1 69 333-403 23-91 (330)
144 PF14248 DUF4345: Domain of un 53.8 1.3E+02 0.0027 24.9 9.1 61 28-91 50-110 (124)
145 COG0813 DeoD Purine-nucleoside 53.5 17 0.00036 33.0 3.6 54 452-526 18-71 (236)
146 COG4377 Predicted membrane pro 51.1 45 0.00098 29.7 5.7 45 19-66 8-52 (258)
147 PF07492 Trehalase_Ca-bi: Neut 48.4 12 0.00027 21.9 1.3 11 511-521 14-24 (30)
148 PF10011 DUF2254: Predicted me 48.4 3.1E+02 0.0066 27.7 12.7 29 406-434 326-354 (371)
149 PRK10263 DNA translocase FtsK; 48.2 1.6E+02 0.0036 34.7 11.0 16 26-41 77-92 (1355)
150 PF10086 DUF2324: Putative mem 47.1 1.2E+02 0.0026 28.1 8.4 27 32-60 2-28 (223)
151 COG4587 ABC-type uncharacteriz 45.1 1.5E+02 0.0033 27.7 8.4 81 17-98 103-189 (268)
152 PF07694 5TM-5TMR_LYT: 5TMR of 44.9 2.1E+02 0.0045 24.8 11.3 46 29-76 86-133 (169)
153 KOG0020 Endoplasmic reticulum 44.1 21 0.00045 36.4 3.0 17 511-527 142-158 (785)
154 PRK02975 putative common antig 43.5 1.8E+02 0.004 28.7 9.0 35 29-67 160-194 (450)
155 PF11694 DUF3290: Protein of u 43.0 83 0.0018 27.0 6.1 34 27-60 22-55 (149)
156 COG1230 CzcD Co/Zn/Cd efflux s 42.6 1.5E+02 0.0032 28.8 8.4 28 19-50 54-81 (296)
157 PF10131 PTPS_related: 6-pyruv 42.1 2.5E+02 0.0054 30.7 11.0 56 17-73 68-123 (616)
158 PF02652 Lactate_perm: L-lacta 40.8 1.6E+02 0.0035 31.2 9.2 57 19-77 175-231 (522)
159 KOG0019 Molecular chaperone (H 40.3 19 0.00042 37.8 2.2 17 511-527 102-118 (656)
160 COG3462 Predicted membrane pro 38.9 1.7E+02 0.0037 23.3 6.5 67 51-117 8-79 (117)
161 PF10856 DUF2678: Protein of u 38.5 64 0.0014 26.1 4.3 20 55-74 61-80 (118)
162 COG2820 Udp Uridine phosphoryl 38.1 87 0.0019 29.1 5.7 51 452-524 21-71 (248)
163 COG1480 Predicted membrane-ass 37.3 5.4E+02 0.012 28.1 12.1 32 89-120 437-468 (700)
164 COG5557 Polysulphide reductase 36.3 2.9E+02 0.0063 27.1 9.0 73 38-110 72-149 (401)
165 PF07698 7TM-7TMR_HD: 7TM rece 36.1 3.2E+02 0.0069 24.4 11.8 24 24-47 102-125 (194)
166 KOG3088 Secretory carrier memb 35.6 43 0.00094 31.7 3.5 23 321-343 67-89 (313)
167 PF06103 DUF948: Bacterial pro 33.8 2.2E+02 0.0047 21.8 8.9 16 123-138 32-47 (90)
168 PF15086 UPF0542: Uncharacteri 33.8 1.9E+02 0.0041 21.2 7.8 38 93-147 29-66 (74)
169 COG1033 Predicted exporters of 33.6 3.6E+02 0.0078 30.0 10.6 17 29-45 203-219 (727)
170 PF07155 ECF-ribofla_trS: ECF- 33.4 3.2E+02 0.007 23.7 11.9 38 30-67 80-121 (169)
171 PF11177 DUF2964: Protein of u 32.6 1.8E+02 0.004 20.6 5.6 28 50-77 5-32 (62)
172 PF05449 DUF754: Protein of un 32.1 2.3E+02 0.005 21.6 7.1 44 29-74 4-47 (83)
173 PF13042 DUF3902: Protein of u 31.6 3.3E+02 0.0071 23.2 7.7 73 29-103 40-120 (161)
174 COG4097 Predicted ferric reduc 31.1 4.1E+02 0.0088 26.7 9.3 49 26-75 129-178 (438)
175 PF13829 DUF4191: Domain of un 30.7 2.4E+02 0.0052 26.0 7.3 32 41-74 17-48 (224)
176 COG4420 Predicted membrane pro 30.6 3.9E+02 0.0085 23.8 10.7 14 80-93 86-99 (191)
177 PF10329 DUF2417: Region of un 30.1 3.1E+02 0.0068 25.5 8.1 34 62-95 80-113 (232)
178 COG4325 Predicted membrane pro 29.7 6E+02 0.013 25.6 10.4 52 408-475 362-413 (464)
179 COG2456 Uncharacterized conser 29.2 3E+02 0.0064 22.0 8.2 17 80-96 60-76 (121)
180 PF04184 ST7: ST7 protein; In 28.9 1.6E+02 0.0035 30.6 6.5 25 54-80 477-501 (539)
181 PF15449 Retinal: Retinal prot 28.6 9.8E+02 0.021 27.8 12.9 46 456-530 323-368 (1287)
182 TIGR02921 PEP_integral PEP-CTE 28.5 6.5E+02 0.014 27.0 10.6 13 31-43 160-172 (952)
183 PF04955 HupE_UreJ: HupE / Ure 28.5 4.3E+02 0.0092 23.5 9.7 73 25-104 82-154 (180)
184 PF11023 DUF2614: Protein of u 28.4 2.7E+02 0.0058 22.5 6.3 48 56-107 12-60 (114)
185 PF03591 AzlC: AzlC protein; 28.2 3.7E+02 0.008 22.8 9.9 47 28-77 3-49 (143)
186 PF10990 DUF2809: Protein of u 28.2 2.1E+02 0.0045 22.2 5.7 55 21-78 12-66 (91)
187 PF13633 N_methyl_3: Prokaryot 27.8 70 0.0015 17.5 2.0 17 25-41 5-21 (22)
188 PF04678 DUF607: Protein of un 27.8 4.2E+02 0.0092 23.5 8.5 56 59-120 97-152 (180)
189 KOG3088 Secretory carrier memb 27.0 1.7E+02 0.0037 27.9 5.8 23 23-45 162-184 (313)
190 PRK05415 hypothetical protein; 26.7 6.5E+02 0.014 25.1 12.4 25 150-175 138-162 (341)
191 PF04973 NMN_transporter: Nico 26.6 4.5E+02 0.0098 23.2 10.3 81 19-107 42-132 (181)
192 PF14965 BRI3BP: Negative regu 26.5 4.5E+02 0.0097 23.2 10.4 35 107-141 142-176 (177)
193 PF11382 DUF3186: Protein of u 26.4 3.7E+02 0.0079 26.4 8.5 55 300-354 21-75 (308)
194 PF10754 DUF2569: Protein of u 25.6 4.3E+02 0.0092 22.6 9.9 42 20-61 54-96 (149)
195 COG4251 Bacteriophytochrome (l 25.2 9.1E+02 0.02 26.3 22.9 40 146-185 330-369 (750)
196 PF15110 TMEM141: TMEM141 prot 25.0 2.6E+02 0.0057 21.7 5.4 32 25-56 27-62 (94)
197 PF13974 YebO: YebO-like prote 24.9 2.8E+02 0.0061 20.9 5.5 14 100-113 9-22 (80)
198 PF07234 DUF1426: Protein of u 24.9 2.4E+02 0.0053 21.9 5.2 25 54-78 14-38 (117)
199 KOG2493 Na+/Pi symporter [Inor 24.7 3.1E+02 0.0066 28.5 7.5 36 41-77 185-220 (512)
200 PF06570 DUF1129: Protein of u 24.7 5.3E+02 0.012 23.4 11.6 27 19-45 79-105 (206)
201 TIGR02921 PEP_integral PEP-CTE 24.7 2.6E+02 0.0057 29.7 7.1 14 16-29 136-149 (952)
202 PF03729 DUF308: Short repeat 24.3 2.6E+02 0.0057 19.7 6.8 26 50-75 20-45 (72)
203 PF07787 DUF1625: Protein of u 24.3 1.4E+02 0.003 28.2 5.0 25 50-74 181-205 (248)
204 PF00556 LHC: Antenna complex 24.2 1.4E+02 0.0031 19.0 3.5 25 50-74 10-34 (40)
205 TIGR00219 mreC rod shape-deter 24.2 4.8E+02 0.01 25.2 8.7 15 312-326 71-85 (283)
206 PRK11477 carbohydrate diacid t 23.5 7.7E+02 0.017 24.8 13.2 90 160-283 8-97 (385)
207 COG4965 TadB Flp pilus assembl 23.0 7.2E+02 0.016 24.3 10.9 31 142-172 138-168 (309)
208 PF14150 YesK: YesK-like prote 22.9 3.4E+02 0.0074 20.5 9.9 47 27-75 3-50 (81)
209 PRK13922 rod shape-determining 22.8 6.7E+02 0.015 23.9 10.8 33 123-155 75-107 (276)
210 TIGR00346 azlC 4-azaleucine re 21.8 6.4E+02 0.014 23.3 9.6 48 26-76 10-57 (221)
211 PF05651 Diacid_rec: Putative 21.6 4.9E+02 0.011 21.9 13.2 90 161-284 4-93 (135)
212 PF07444 Ycf66_N: Ycf66 protei 21.2 3.8E+02 0.0083 20.5 9.4 42 36-77 18-59 (84)
213 COG2807 CynX Cyanate permease 21.2 5.8E+02 0.013 25.8 8.5 43 22-68 250-292 (395)
214 PF15576 DUF4661: Domain of un 21.1 4.7E+02 0.01 23.3 7.0 66 31-99 184-250 (253)
215 PF14936 p53-inducible11: Tumo 21.0 5.7E+02 0.012 22.4 7.7 12 30-41 99-110 (179)
216 PF13567 DUF4131: Domain of un 20.9 3.4E+02 0.0074 23.0 6.7 16 29-44 18-33 (176)
217 PRK13661 hypothetical protein; 20.5 6.2E+02 0.013 22.6 10.9 8 21-28 64-71 (182)
218 PF10785 NADH-u_ox-rdase: NADH 20.5 3.5E+02 0.0075 20.7 5.5 31 18-48 17-47 (86)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-42 Score=350.25 Aligned_cols=440 Identities=21% Similarity=0.296 Sum_probs=317.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhh-------HHHHHHh----cccchhhHHHHHHHHHH
Q 008718 24 SDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT-------HFISLWT----FTVHSKAVAVVMTIAKM 92 (556)
Q Consensus 24 s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~-------h~l~i~~----~~~~~~~~~~~~~~~~~ 92 (556)
.|.++++.++.+-..++++..+.=+...--++++.|.++.+.-.+ -++.++. |..|-|.+. +...-.+
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~-v~d~~y~ 475 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFA-VSDPQYL 475 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEE-EecCchH
Confidence 677888888888877777655554433333333344332221111 1111111 112211110 1112233
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 008718 93 ACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (556)
Q Consensus 93 ~~a~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~ 172 (556)
+|.+++++.|++ ..++.++++++....++++++.+.++++++.|..+.+.++++....+.+.+
T Consensus 476 vTf~vml~vai~-----------------t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~ 538 (890)
T COG2205 476 VTFAVMLAVALL-----------------TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS 538 (890)
T ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444444444444 345899999999999999999999999999999999999999999999999
Q ss_pred hhCCceeEEEeccCCCCeeEEEEeeccccccCccccc-CChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeee
Q 008718 173 TLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVR 251 (556)
Q Consensus 173 ~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (556)
+++. ++.++++++++.... ...... +.. +......++.++++- . ......|......
T Consensus 539 ~~~~-~v~i~l~~~~~~~~~--~~~~~~------l~~~d~aaa~W~~~~~~~A--------G-----~gTdTlpg~~~~~ 596 (890)
T COG2205 539 LLNQ-RVVILLPDDNGKLQP--LGNPDG------LSADDRAAAQWAFENGKPA--------G-----AGTDTLPGAKYLY 596 (890)
T ss_pred HhCC-ceEEEEecCCccccc--ccCCcc------ccHHHHHHhhchhhCCCcc--------c-----cCCCCCCCCceeE
Confidence 9998 677778876554311 111100 000 011112223222210 0 1222244444555
Q ss_pred eccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 252 VPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALD 331 (556)
Q Consensus 252 ~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~ 331 (556)
.| +..++...||+.+........++++..++..++++++.|+++..+.++..+.+-
T Consensus 597 lP--------------l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l---------- 652 (890)
T COG2205 597 LP--------------LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARL---------- 652 (890)
T ss_pred ee--------------cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 56 777788899999998877789999999999999999999998887766544321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 008718 332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~ 408 (556)
..+.++.+++|++++||||||||++|.|.++.|... .++ ++..+.+..|.+.++++..++++++++.|+++|
T Consensus 653 -----~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG 727 (890)
T COG2205 653 -----AAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSG 727 (890)
T ss_pred -----HHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 122345578999999999999999999999999875 334 447789999999999999999999999999999
Q ss_pred CccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeC
Q 008718 409 SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAK 488 (556)
Q Consensus 409 ~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~ 488 (556)
.++++.++..+.+++.+++..+....... .+.++++.+++ ++..|...+.||+.||++||+||++++..+-+....+
T Consensus 728 ~~~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~ 804 (890)
T COG2205 728 GVNLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE 804 (890)
T ss_pred CcccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe
Confidence 99999999999999999999888776444 46666777766 4777999999999999999999999877544444444
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeeccc
Q 008718 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
.+ .++++|.|+|+|||++..++||++||+...... ..|+||||+|||
T Consensus 805 ~~-------------------~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~ 851 (890)
T COG2205 805 RE-------------------NVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICR 851 (890)
T ss_pred cc-------------------eEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHH
Confidence 44 399999999999999999999999999766443 679999999997
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.9e-33 Score=311.04 Aligned_cols=359 Identities=22% Similarity=0.305 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccC
Q 008718 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (556)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 204 (556)
+..+++++....++++++.+.+.++++.|..+.+.+++++.+.+.+.+.++... ++|++++++.........
T Consensus 494 l~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~~~~~~~-~l~l~~~~g~~~~~~~~~------- 565 (895)
T PRK10490 494 LTAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLASTFQARS-QLLLPDDNGKLQPLTHDQ------- 565 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCE-EEEEEcCCCccccccccc-------
Confidence 566777777778889999999999999999999999999999999999999754 577777554332111000
Q ss_pred cccccCChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC
Q 008718 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~ 284 (556)
...+........++..+.+.-. .....+......+| +..++..+|++.+....
T Consensus 566 ~~~~~~~~~~~w~~~~~~~~g~-------------~~~tl~~~~~~~lP--------------l~~~~~~~Gvl~l~~~~ 618 (895)
T PRK10490 566 GMTPWDDAIARWSFDKGQPAGA-------------GTDTLPGVPYQILP--------------LKSAQKTYGLLAVEPGN 618 (895)
T ss_pred cccchHHHHHHHHHhcCCcccc-------------CcCcCCCCceEEEE--------------EEECCEEEEEEEEecCc
Confidence 0011111122223322221100 00012223344556 55566778998887654
Q ss_pred -CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008718 285 -GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAII 363 (556)
Q Consensus 285 -~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~ 363 (556)
...+++++..++..++.+++.++++..+..+..+. +...+.++.+.+|++.++||+||||++|.
T Consensus 619 ~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~---------------~l~~e~e~lr~~lla~isHELrtPLt~I~ 683 (895)
T PRK10490 619 LRQLMIPEQQRLLETFTLLIANALERLTLTASEEQA---------------RLASEREQLRNALLAALSHDLRTPLTVLF 683 (895)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 45788999999999999999999876543321111 01112234467899999999999999999
Q ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceE
Q 008718 364 ALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSM 441 (556)
Q Consensus 364 ~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 441 (556)
++++.+.... ......+.++.+.+...++..++++++++++.+.+...+...++++.+++++++..+.......++
T Consensus 684 g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~i-- 761 (895)
T PRK10490 684 GQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPI-- 761 (895)
T ss_pred HHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCCE--
Confidence 9999886542 223344678889999999999999999999999998889999999999999999999887765554
Q ss_pred EEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCC
Q 008718 442 TLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCG 521 (556)
Q Consensus 442 ~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~G 521 (556)
.++++++.+ .+.+|+..+.|++.||++||+||+++|+.+.+.....++ .+.|+|+|||+|
T Consensus 762 ~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~-------------------~v~I~V~D~G~G 821 (895)
T PRK10490 762 NLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE-------------------RLQLDVWDNGPG 821 (895)
T ss_pred EEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC-------------------EEEEEEEECCCC
Confidence 445555544 467799999999999999999999876544333333332 399999999999
Q ss_pred CCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 522 VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 522 i~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
||++..+++|+||++++... ...|+|+||++||+
T Consensus 822 I~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Ivk~ 855 (895)
T PRK10490 822 IPPGQEQLIFDKFARGNKES-AIPGVGLGLAICRA 855 (895)
T ss_pred CCHHHHHHhcCCCccCCCCC-CCCCccHHHHHHHH
Confidence 99999999999999876432 33599999999984
No 3
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-32 Score=259.19 Aligned_cols=404 Identities=16% Similarity=0.115 Sum_probs=305.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHH
Q 008718 25 DILIALAYFSIPVELIYFVQK---SAFFPYRWVLMQFGSFIILCGLTHFISLWTFT-VHSKAVAVVMTIAKMACAFVSCI 100 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~---~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~-~~~~~~~~~~~~~~~~~a~~s~~ 100 (556)
+..-++|++..++..+|+.++ +..++.+.+.. +.++ +|++.+|+.|+++. +.++.+..++.+..||...+|++
T Consensus 105 a~~c~iSti~~G~l~g~~~~~~~r~~R~~~p~~~~-~v~~--~~E~lqM~iIL~~a~~~~~av~lVs~i~iPMil~Nsvg 181 (557)
T COG3275 105 ALSCAISTILEGLLGGLVHLYLIRRGRWDSPIVAA-LVGI--VAEMLQMLIILVIARPFADAVDLVSNIAIPMILGNSVG 181 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHH-HHHH--HHHHHHHHHHhhccCcHHHHHHHHhhccchhHhhcchh
Confidence 444577888889988887653 33455444443 4444 78888888887654 44677778888888888888888
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH-hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCcee
Q 008718 101 TALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEET-GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEEC 179 (556)
Q Consensus 101 ~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~ 179 (556)
+++++.. +.++....++....+... +...++....++++++.++ +..+++.+.+.++++++
T Consensus 182 aa~fm~i-----------------~~~~~~~~E~~~a~~a~~aL~iA~~tlplfr~gfn~es-~~~va~Ii~~~~~~~AV 243 (557)
T COG3275 182 AALFMRI-----------------LLDRRAKFEKYAAVQAKLALKIANKTLPLFRQGFNEES-LMKVAEIIYEELGAGAV 243 (557)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcChhh-HHHHHHHHHHHhCCCeE
Confidence 8888777 455555544444444444 3444455555888888887 88999999999999999
Q ss_pred EEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccC
Q 008718 180 ALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSN 259 (556)
Q Consensus 180 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 259 (556)
+| +++.-.+++.......+..+.++..+.+.++++.++.+......+ ++ |.+..|+.++.+..|
T Consensus 244 ai-----Td~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~e~---~~--csh~~c~l~s~lViP------ 307 (557)
T COG3275 244 AI-----TDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGNEV---YE--CSHPTCKLGSALVIP------ 307 (557)
T ss_pred Ee-----cCHHHHHHhhcccccccCCCCeeccHHHHHHHhhCCEEEEccchh---hc--cCCCCCCcCCceEee------
Confidence 99 777766666554444445577888899999999999888876665 22 668889999999999
Q ss_pred ccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 260 FQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEK 339 (556)
Q Consensus 260 ~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 339 (556)
+..++.++|.++++...++.++..+.++.+.++..++.++ ++.+.+++.+.+++.+.+
T Consensus 308 --------L~~~g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQi--------------e~ge~e~q~~ll~~AEik 365 (557)
T COG3275 308 --------LRGKGRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQI--------------EAGEAERQRELLKQAEIK 365 (557)
T ss_pred --------cccCCceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHH
Confidence 6666788999999999999999999999999999999988 455555666667777888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc-cccee
Q 008718 340 AIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELD-NGPFN 418 (556)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~-~~~~~ 418 (556)
++|++-+ +|+|+|.||+|++. ++.+.++..+++-++..|.|.. ++.+ .+.++
T Consensus 366 ~LqaQvn-----PHFLFNaLNTIsa~-------------------IR~npdkAreLil~LS~yfR~N---L~~~~~~~v~ 418 (557)
T COG3275 366 ALQAQVN-----PHFLFNALNTISAV-------------------IRRNPDKARELILYLSTYFRYN---LENNTQEIVT 418 (557)
T ss_pred HHHhccC-----hHHHHHHHHHHHHH-------------------hcCChHHHHHHHHHHHHHHHHH---hcCCcceEee
Confidence 8888989 99999999999988 7778888899999999998843 3333 56899
Q ss_pred HHHHHHHHHHHHHhhhhcCCce--EEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC-----CCCeEEEEEeeeCCCC
Q 008718 419 LQIVLREVIKLIKPVASCKKLS--MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-----KEGYVSIIASVAKPES 491 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~-----~~g~~~i~~~~~~~~~ 491 (556)
|.+-++++-++++.+..+.+-+ +.+++|+... +......++|.|++||+||+ ..|.+.+++..++.+
T Consensus 419 L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~-----~~~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~- 492 (557)
T COG3275 419 LSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR-----QVQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDAD- 492 (557)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh-----hccCchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCe-
Confidence 9999999999998876655544 4444444432 22335578889999999998 236666666665554
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.+.|+|||.|++|+. ..|+|+||+++++
T Consensus 493 -------------------l~i~VeDng~li~p~~-----------------~~g~giGL~nv~~ 521 (557)
T COG3275 493 -------------------LRIEVEDNGGLIQPDE-----------------EDGTGIGLANVHK 521 (557)
T ss_pred -------------------EEEEEecCCCCcCCCC-----------------CCCCChHHHHHHH
Confidence 9999999999999861 2488999998864
No 4
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=9.9e-30 Score=276.91 Aligned_cols=361 Identities=18% Similarity=0.177 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHhhhHHH--HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc
Q 008718 125 RADELDREMGLILTQEE--TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (556)
Q Consensus 125 ~~~~l~~~~~~~~~~~~--~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (556)
+..++++.....-.+.+ ......++++.+.+..+.+++++.+++.+.+.++++.+++|+.+.++........++.+..
T Consensus 284 lr~~l~~~~~k~~~~~~~dyr~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~ 363 (679)
T TIGR02916 284 LRARLRVFISKHFFRYKYDYREEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLA 363 (679)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCc
Confidence 45555555543322221 2223468889999999999999999999999999999999999887766665554443222
Q ss_pred cCcccccCChhHHHhhcccCceEecCCCchhhh-hh--cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEE
Q 008718 203 IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI-RL--LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLM 279 (556)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~ 279 (556)
....+...+.+......+......+....... .. ............+++| +..++...|++.
T Consensus 364 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vP--------------L~~~~~~~G~l~ 428 (679)
T TIGR02916 364 -QAFEPSDSAFCQFLQESGWIINLEEARSEPDHYSGLVLPEWLREIPNAWLIVP--------------LISGEELVGFVV 428 (679)
T ss_pred -ccCCCCCCHHHHHHHhCCCcccchhhcCCcccccccccchhhhcCCCceEEEE--------------eccCCEEEEEEE
Confidence 12344444444444444433332222211100 00 0000111234456777 444556688887
Q ss_pred eccC-CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008718 280 LPTD-GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTL 358 (556)
Q Consensus 280 ~~~~-~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~p 358 (556)
+..+ .++.++.++.++++.++.+++.++++.+..++..+. +..++.+++.+.++||+|||
T Consensus 429 l~~~~~~~~~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~-------------------~~~~~~~~~~a~i~HdLrn~ 489 (679)
T TIGR02916 429 LARPRTAGEFNWEVRDLLKTAGRQAASYLAQMEASEALAEA-------------------RQFEAFNRMSAFVVHDLKNL 489 (679)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhccH
Confidence 7665 456899999999999999999999776654432211 11233567888999999999
Q ss_pred HHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcC
Q 008718 359 MHAIIALSSLLLETDLTP-EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 437 (556)
Q Consensus 359 L~~I~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 437 (556)
++.+....+...+...++ ..++.++.+.+..+++.++++++..... ..+..++++.++++++.+.....
T Consensus 490 l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~---- 559 (679)
T TIGR02916 490 VAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRAQ---- 559 (679)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhhh----
Confidence 999998888776654444 4566788899999999999988765432 45666899999999998876543
Q ss_pred CceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEE
Q 008718 438 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN 516 (556)
Q Consensus 438 ~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~ 516 (556)
...+.++++.+ ..+.+|+..+.+++.|+++||+||++++ .+.+.....+ + .+.|+|+
T Consensus 560 ~~~~~l~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~-~-------------------~~~i~V~ 617 (679)
T TIGR02916 560 GPRPEVSIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC-G-------------------AARIEIE 617 (679)
T ss_pred cCCceEEeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC-C-------------------EEEEEEE
Confidence 23344444433 3467799999999999999999999764 4555444333 2 3999999
Q ss_pred EcCCCCCCCC-hhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 517 DSGCGVPPQD-IPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 517 DnG~Gi~~e~-~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|||+|||++. .+++|+||+++++ +|+|+||++||+
T Consensus 618 D~G~Gi~~~~i~~~lF~pf~~~~~-----~G~GLGL~i~~~ 653 (679)
T TIGR02916 618 DSGCGMSPAFIRERLFKPFDTTKG-----AGMGIGVYECRQ 653 (679)
T ss_pred EcCCCcChHHHHHhcCCCCCCCCC-----CCcchhHHHHHH
Confidence 9999999999 9999999998764 589999999984
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1.4e-29 Score=281.45 Aligned_cols=385 Identities=16% Similarity=0.215 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChH--HHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc
Q 008718 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (556)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~--~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (556)
+...+++....+.++.+..+.+.+++..+......+ +.++.++..+.+.++.+.+++++.+.++............
T Consensus 258 l~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 335 (828)
T PRK13837 258 LVLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTP-- 335 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCC--
Confidence 344455555666777777788889988887765544 8899999999999999999999988776554432210000
Q ss_pred cCccccc-CChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec
Q 008718 203 IGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (556)
Q Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~ 281 (556)
....+. .......+..........+........ ......+....+++| +..++...|++.+.
T Consensus 336 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~g~l~~~ 398 (828)
T PRK13837 336 -DPVWPDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLA--------------FKSGDRIVALLGLG 398 (828)
T ss_pred -CCCchHHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEE--------------eccCCceEEEEEec
Confidence 000000 001111122222222221111111110 111122334445555 44556667777765
Q ss_pred cCC-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008718 282 TDG-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360 (556)
Q Consensus 282 ~~~-~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~ 360 (556)
... ...+.+.+..+++.++.+++.++++.+...+..+.++++ +. .+..++.++|+++++||+||||+
T Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l-------~~-----~~rl~~l~~~~~~iaHeLrtPL~ 466 (828)
T PRK13837 399 RQRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRL-------EH-----ARRLEAVGTLASGIAHNFNNILG 466 (828)
T ss_pred ccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHHHHhhHHhhhHHH
Confidence 543 345668999999999999999987776554443332222 11 12234578899999999999999
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCc
Q 008718 361 AIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKL 439 (556)
Q Consensus 361 ~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i 439 (556)
.|.++++++.+. ..+++.+++++.+.+.++++..++++++++++... ....++++.+++++++..+.... .+++
T Consensus 467 ~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i 541 (828)
T PRK13837 467 AILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGV 541 (828)
T ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCc
Confidence 999999988754 34556788999999999999999999999998543 34568999999999999887654 4677
Q ss_pred eEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEc
Q 008718 440 SMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDS 518 (556)
Q Consensus 440 ~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~Dn 518 (556)
.+.++.++.. ..+.+|+..+.+++.||++||+||+++++ +.+......... ...........+.++.|+|+||
T Consensus 542 ~l~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~-----~~~~~~~~~~~~~~v~i~V~D~ 615 (828)
T PRK13837 542 ELDFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRA-----PKVLSHGVLPPGRYVLLRVSDT 615 (828)
T ss_pred EEEEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccc-----ccccccccCCCCCEEEEEEEEC
Confidence 7777765543 35778999999999999999999987644 444444331110 0000111112234699999999
Q ss_pred CCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 519 GCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 519 G~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|+|||++.++++|+|||+++. +|+|+||++||+
T Consensus 616 G~GI~~e~~~~iFe~F~~~~~-----~G~GLGL~i~~~ 648 (828)
T PRK13837 616 GAGIDEAVLPHIFEPFFTTRA-----GGTGLGLATVHG 648 (828)
T ss_pred CCCCCHHHHHHhhCCcccCCC-----CCCcchHHHHHH
Confidence 999999999999999998764 589999999984
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.98 E-value=2e-30 Score=288.18 Aligned_cols=200 Identities=33% Similarity=0.544 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccce
Q 008718 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
+++++.+.+|++.++||+||||++|.|+++++.+...+++.+++++.+..+++++..++++++++++++.+...+.+.++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 34445678899999999999999999999999888888888999999999999999999999999999999989999999
Q ss_pred eHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCC
Q 008718 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
++.++++++...+......+++.+.++.+++.+..+.+|+.++.||+.||++||+||+++|.+.+......++
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD------- 429 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC-------
Confidence 9999999999999999999999999988877776688899999999999999999999888877776655333
Q ss_pred CCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC-CCCCC-CCCcceeeecccC
Q 008718 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-GSSCQ-TPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~-~~~~~-~~G~GlGL~i~k~ 556 (556)
.+.++|.|||+|||++.+++||+|||+++ ....+ .+|+|+||++||+
T Consensus 430 ------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~ 478 (779)
T PRK11091 430 ------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKR 478 (779)
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHH
Confidence 39999999999999999999999999985 32222 4699999999984
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.97 E-value=6.2e-30 Score=280.15 Aligned_cols=214 Identities=22% Similarity=0.337 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008718 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (556)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~ 405 (556)
.++++++++++.+++.+++.+|+++++||+||||++|.++++.+.....+++.+++++.+.++++++..+++++++++++
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777788888899999999999999999999999999887777888999999999999999999999999999
Q ss_pred cCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 008718 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (556)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~ 485 (556)
+.+...+...++++.+++++++..+...++.+++.+.+.++...+..+.+|+.++.||+.||++||+||++.|.+.+.+.
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~ 591 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVD 591 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999999999999999999999999998877666666888999999999999999999999888777665
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..... +.++.|+|.|||+|||++.+++||+||++++......+|+||||+|||+
T Consensus 592 ~~~~~-----------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~ 645 (894)
T PRK10618 592 QDESS-----------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQ 645 (894)
T ss_pred EccCC-----------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHH
Confidence 43321 1259999999999999999999999999876654445699999999984
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.97 E-value=2.7e-29 Score=254.59 Aligned_cols=207 Identities=21% Similarity=0.350 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 329 ALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-------PEQRVMIETVLKSSNLLTTLVDDVLD 401 (556)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~l~~ 401 (556)
+++++++++++.++.+++|+++++||+||||++|.+.++.+.....+ +..+++++.+....+++..+++++++
T Consensus 136 ~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~ 215 (380)
T PRK09303 136 VLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLE 215 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677799999999999999999999999999854322 33677889999999999999999999
Q ss_pred hhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEE
Q 008718 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (556)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~ 481 (556)
+++.+.+...+.+.++++.+++++++..+......+++.+.++++.+.+. +.+|+..+.+|+.||++||+||+++|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~~~~~~I 294 (380)
T PRK09303 216 VGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYTPEGGTI 294 (380)
T ss_pred HHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 99999888888889999999999999999999989999999988776654 67899999999999999999999876544
Q ss_pred EEE-eeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 482 IIA-SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 482 i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+. ....+. ++.|+|.|||+|||++..+++|+|||+++. .....|+||||++||+
T Consensus 295 ~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~~~ 350 (380)
T PRK09303 295 TLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVCRR 350 (380)
T ss_pred EEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHHHH
Confidence 333 232332 499999999999999999999999998876 3345699999999984
No 9
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-30 Score=239.31 Aligned_cols=199 Identities=23% Similarity=0.418 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccc
Q 008718 339 KAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE--QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGP 416 (556)
Q Consensus 339 ~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~ 416 (556)
+.++++..|.+++||||||||+++.++++.|.+....+. ..+++..-....+||-.++++++.++|++..+..++.+.
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~ 299 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEW 299 (459)
T ss_pred HHHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHH
Confidence 344557789999999999999999999999998755433 678899999999999999999999999999999999999
Q ss_pred eeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCC
Q 008718 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~ 496 (556)
+++..++..+++.+....+.....-.+.--+..+.++..|++.+.||+.|+++||+||+|+|+.+.......+.
T Consensus 300 inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~------ 373 (459)
T COG5002 300 INFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET------ 373 (459)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc------
Confidence 99999999999999887554444311122245567788899999999999999999999987655444444333
Q ss_pred CCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCC-CCcceeeecccC
Q 008718 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~-~G~GlGL~i~k~ 556 (556)
++.++|.|.|.|||.+.+++||++||+.+...+++ +|||+||+|+|.
T Consensus 374 -------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIake 421 (459)
T COG5002 374 -------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred -------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHH
Confidence 59999999999999999999999999987665444 699999999973
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.96 E-value=8.8e-29 Score=275.22 Aligned_cols=212 Identities=30% Similarity=0.511 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008718 325 EQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+.++++++++++.+++++++..|++.++||+||||+.|.++++++.....+++.+++++.+..+++++..++++++++++
T Consensus 428 ~~e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~sr 507 (924)
T PRK10841 428 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 507 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777778888999999999999999999999999988888888899999999999999999999999999
Q ss_pred hcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 008718 405 LEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA 484 (556)
Q Consensus 405 ~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~ 484 (556)
++.+...++..++++.+++++++..+......+++.+.+.++++.+..+.+|+.++.||+.||++||+||+++|.+.+.+
T Consensus 508 ie~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v 587 (924)
T PRK10841 508 IESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHV 587 (924)
T ss_pred hcCCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 99998899999999999999999999998889999999888887776788999999999999999999999988877666
Q ss_pred eeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
...++ ++.|+|+|||+|||++.++++|+||++.+.... ..+|+||||++||+
T Consensus 588 ~~~~~--------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~ 640 (924)
T PRK10841 588 RVDGD--------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEK 640 (924)
T ss_pred EEeCC--------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHH
Confidence 55332 499999999999999999999999998765432 34699999999984
No 11
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=6.4e-27 Score=231.18 Aligned_cols=205 Identities=27% Similarity=0.410 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008718 327 NVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
..++.+.++++++.+++...|.+.++|++++||+.|+++++++.++ ..+++..+++..+.+....+.++|++++.|+
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566778889999999999999999999999999999999875 6678889999999999999999999999999
Q ss_pred hhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 008718 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (556)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~ 483 (556)
++.... ...++.|+.+.+++++..+.......++.+.+ ++ +|. +.+|+.++.|+++||+.||+||+.++...+.
T Consensus 587 ~l~~~~--~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGLTE--APLQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhcccc--CCCCCcchHHHHHHHHHhcccccccccceEEe--cc-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 987654 44458999999999999999988888887776 34 664 6779999999999999999999976533333
Q ss_pred EeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.....+. -+.++|+|||.||++...++||..|.+.+... .+.|+|+||+|||+
T Consensus 661 I~~~r~ed------------------~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~-~y~gtG~GL~I~kk 714 (750)
T COG4251 661 ISAERQED------------------EWTFSVRDNGIGIDPAYFERIFVIFQRLHSRD-EYLGTGLGLAICKK 714 (750)
T ss_pred EeeeccCC------------------ceEEEecCCCCCcCHHHHHHHHHHHHhcCchh-hhcCCCccHHHHHH
Confidence 33322221 18999999999999999999999998876543 45699999999985
No 12
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.96 E-value=9e-26 Score=256.53 Aligned_cols=211 Identities=37% Similarity=0.618 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 008718 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (556)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~ 410 (556)
..++++.+++++.+.+|++.++||+||||++|.++++.+.....++..+++++.+.++++++..++++++++++++.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 359 (919)
T PRK11107 280 DLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKL 359 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33445556666778899999999999999999999999988888888899999999999999999999999999999988
Q ss_pred cccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCC
Q 008718 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~ 490 (556)
.+...++++.+++++++..+...+..+++.+.++++++.+..+.+|+..+.||+.||++||+||+++|.+.+.+......
T Consensus 360 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~ 439 (919)
T PRK11107 360 VLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRALS 439 (919)
T ss_pred EEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEecC
Confidence 88999999999999999999999999999999998887776678899999999999999999999988876665543221
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+ +..++.|+|.|||+|||++.++++|+||++.+...+ +.+|+||||++||+
T Consensus 440 ~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~ 491 (919)
T PRK11107 440 N---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQK 491 (919)
T ss_pred C---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHH
Confidence 1 222589999999999999999999999998765433 34699999999984
No 13
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.96 E-value=9.9e-28 Score=273.77 Aligned_cols=205 Identities=36% Similarity=0.600 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 008718 332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE 411 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~ 411 (556)
.++.+.+++++++.+|++.++||+||||+.|.++++++.+...+++.+++++.+.++++++..++++++++++++.+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~ 531 (968)
T TIGR02956 452 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLS 531 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 34556677778899999999999999999999999999988888889999999999999999999999999999999989
Q ss_pred ccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCC
Q 008718 412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES 491 (556)
Q Consensus 412 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~ 491 (556)
+.+.++++.++++++...+......+++.+.++++++.+..+.+|+..+.+|+.||++||+||++.|.+.+.+...++.
T Consensus 532 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~- 610 (968)
T TIGR02956 532 ISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS- 610 (968)
T ss_pred eeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC-
Confidence 9999999999999999999999999999999998877777788899999999999999999999988877766554432
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.++|+|.|||+|||++.+++||+||++.+ .....+|+|+||+|||+
T Consensus 611 ------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i~~~ 656 (968)
T TIGR02956 611 ------------------SLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAISQR 656 (968)
T ss_pred ------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHHHHH
Confidence 18999999999999999999999999987 33344699999999984
No 14
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.96 E-value=2.3e-27 Score=269.57 Aligned_cols=211 Identities=30% Similarity=0.474 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008718 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (556)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (556)
+.++..+++.++++.+++++.+.+|++.++||+||||++|.++++++.....+++.+++++.+...++++..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666677777888999999999999999999999999988888888999999999999999999999999
Q ss_pred hhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 008718 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482 (556)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i 482 (556)
++++.+...+..+++++.++++++...+......+++.+.+.+++..+..+.+|+.++.|++.||++||+||+++|.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999998899999999888887777888999999999999999999999888776
Q ss_pred EEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 483 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+...++ ++.|+|+|||+|||++.++++|+||++++.. .+|+||||++||+
T Consensus 537 ~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~ 587 (921)
T PRK15347 537 RVKRHEQ--------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIASS 587 (921)
T ss_pred EEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHHHH
Confidence 6554332 3999999999999999999999999987643 3699999999984
No 15
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=229.48 Aligned_cols=186 Identities=24% Similarity=0.392 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSL---LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
..+++.++++||+++||++|.++++. +.+....++..+.+..|..-.+||..+..++..|++-... ...++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~----a~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRD----AAGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcc----ccCCccH
Confidence 46889999999999999999987764 4566778888999999999999999999999999995433 2569999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCC---CCeEEEEEeeeCCCCCCCCC
Q 008718 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~ 496 (556)
.+.+++++..+....+..+..+..+.++. +.++.+++.+|+||+.|||.||+++.. ++.+.+.....++
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~------- 530 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGG------- 530 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCC-------
Confidence 99999999999999988888888776543 457889999999999999999999974 3445554444433
Q ss_pred CCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+||+++...++|+||||+|+.+ +|.||||+||.+
T Consensus 531 -------------~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~---~GLGLGLaIS~~ 574 (603)
T COG4191 531 -------------QVVLTVRDNGPGIAPEALPHLFEPFFTTKPVG---KGLGLGLAISQN 574 (603)
T ss_pred -------------eEEEEEccCCCCCCHHHHHhhcCCccccCccc---CCcchhHHHHHH
Confidence 39999999999999999999999999999764 799999999863
No 16
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.95 E-value=1.5e-26 Score=262.24 Aligned_cols=213 Identities=32% Similarity=0.539 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
.++.+...+++.++.+.++..+++..|++.++||+||||+.|.++++++.+...++..+++++.+.+.++++..++++++
T Consensus 421 ~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 500 (914)
T PRK11466 421 AELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDIL 500 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777778888999999999999999999999999999888888888999999999999999999999
Q ss_pred HhhhhcCC--CccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC
Q 008718 401 DLSRLEDG--SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (556)
Q Consensus 401 ~~~~~~~~--~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g 478 (556)
++++++.+ ...+..+++++.+++++++..+......+++.+.+++++..|..+.+|+..+.+|+.||++||+||+++|
T Consensus 501 ~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g 580 (914)
T PRK11466 501 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEG 580 (914)
T ss_pred HHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCC
Confidence 99998876 3556778999999999999999999999999999988877776788899999999999999999999988
Q ss_pred eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 479 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 479 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.+.....+. .+.|+|.|||+|||++.++++|+||++.+.. .+|+|+||++||+
T Consensus 581 ~I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~ 635 (914)
T PRK11466 581 SIVLRSRTDGE--------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTISSR 635 (914)
T ss_pred eEEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHHHH
Confidence 77766544332 3899999999999999999999999976533 3699999999974
No 17
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.95 E-value=2.4e-25 Score=230.47 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+.+|++.++||+||||++|.++++.+.+.. .++...++++.+.+.++++..++++++++++.+.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 557999999999999999999999988654 3455677899999999999999999999999887766666678999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
++.+........ .+++.+.++.++.. .+.+|+..+.+++.||++||+||+++|+.+.+....+++
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~------------ 348 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ------------ 348 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC------------
Confidence 888877766554 56777777775543 366799999999999999999999876543333333332
Q ss_pred CCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.|+|.|||+|||++.++++|+|||+++...+ ..+|+|+||++||+
T Consensus 349 -------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~ 396 (430)
T PRK11006 349 -------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKH 396 (430)
T ss_pred -------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHH
Confidence 389999999999999999999999998765432 34699999999984
No 18
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.94 E-value=2e-26 Score=209.28 Aligned_cols=193 Identities=25% Similarity=0.352 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+...+.++++||+||||..|.|.+++|.....++..+++-+.|.+.++|+..+++.+.-++. ..+....+++++.+
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~V 206 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEV 206 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHHH
Confidence 45678999999999999999999999998877777899999999999999999999966654 22455568999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCC---C--CeEEEEEeeeCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---E--GYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~---~--g~~~i~~~~~~~~~~~~~~~ 497 (556)
++.+....+..+ ..++.+.-++||.+|. +.+|+++|.|+|.|++.||..+.. . |.+++.. ..+.
T Consensus 207 LerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrT--R~~~------- 275 (363)
T COG3852 207 LERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRT--RTGI------- 275 (363)
T ss_pred HHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEe--ccce-------
Confidence 999999998876 4788888899999997 677999999999999999999875 2 3333322 2211
Q ss_pred CCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.++.....+-.+.++|.|||+|+|++.++++|.||.+++. +||||||+++.+
T Consensus 276 -q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~-----~GsGLGLala~~ 328 (363)
T COG3852 276 -QLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE-----GGTGLGLALAQN 328 (363)
T ss_pred -EEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----CCccccHHHHHH
Confidence 11222222233477889999999999999999999998874 489999999864
No 19
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.94 E-value=4e-24 Score=248.77 Aligned_cols=212 Identities=26% Similarity=0.451 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 008718 329 ALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (556)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~ 407 (556)
+++.++++..++++++++|++.++||+||||+.|.++++++.....++ ...+.++.+....+++..++++++++++++.
T Consensus 697 ~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~ 776 (1197)
T PRK09959 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIES 776 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555667889999999999999999999999987655444 3456888899999999999999999999998
Q ss_pred CCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeee
Q 008718 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA 487 (556)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~ 487 (556)
+...+...++++.+++++++..+......+++.+.+..+......+.+|+..+.||+.||++||+||+++|.+.+.....
T Consensus 777 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~ 856 (1197)
T PRK09959 777 GNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLG 856 (1197)
T ss_pred CCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 88888899999999999999999998888998888765433334577899999999999999999999988766554432
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
... .+...+.|+|+|||+|||++.+++||+||++++... ..+|+||||++||+
T Consensus 857 ~~~---------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i~~~ 909 (1197)
T PRK09959 857 HID---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMICKE 909 (1197)
T ss_pred eec---------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHHHHH
Confidence 111 012248899999999999999999999999876532 34599999999984
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=99.93 E-value=1.7e-22 Score=211.07 Aligned_cols=185 Identities=23% Similarity=0.390 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHH
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
...+++.+.++||+||||++|.++++.+.+.. .+++.++.++.+.+..+++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 44678999999999999999999999987653 345567788899999999999999999998843 3456689999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEeeeCCCCCCCCCCCC
Q 008718 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~ 499 (556)
+++++++..+....+.+++.+.++.++..+. +..|+..+.+++.||++||+||+++++ +.+.....++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLPE-IQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCce-EEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 9999999999999989999999987665543 566999999999999999999986544 4444443332
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++..+++|++|++++. .|+|+||++||+
T Consensus 380 ----------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-----~g~GlGL~iv~~ 421 (457)
T PRK10364 380 ----------GVKISVTDSGKGIAADQLEAIFTPYFTTKA-----EGTGLGLAVVHN 421 (457)
T ss_pred ----------eEEEEEEECCCCCCHHHHHHHhCccccCCC-----CCCcccHHHHHH
Confidence 299999999999999999999999997753 489999999984
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=99.93 E-value=1.7e-24 Score=223.87 Aligned_cols=204 Identities=21% Similarity=0.289 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008718 324 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
.+....+....++.++..+.+.+|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.++
T Consensus 192 ~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~~ 266 (433)
T PRK10604 192 ERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTYA 266 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666777777889999999999999999999888876322 2222 237788899999999999999
Q ss_pred hhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 008718 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (556)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~ 483 (556)
+.+.+...+..+++++.+++++++..+......+++.+.+ +... ..+.+|+..+.+++.||++||+||++ +.+.+.
T Consensus 267 rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~~-~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~ 342 (433)
T PRK10604 267 RLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQG-DYGALDMRLMERVLDNLLNNALRYAH-SRVRVS 342 (433)
T ss_pred hccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCCC-ceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 9988888888889999999999999988776666655554 3332 23557999999999999999999996 556666
Q ss_pred EeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+...++ .+.|+|+|||+|||++.++++|+|||+.+.... ..+|+|+||++||+
T Consensus 343 ~~~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~ 396 (433)
T PRK10604 343 LLLDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHS 396 (433)
T ss_pred EEEECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHH
Confidence 554433 389999999999999999999999998765543 33589999999974
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.92 E-value=5.6e-24 Score=221.87 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008718 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (556)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~ 405 (556)
....+....++.++..+...+|++.++||+||||+.|.+.++.+...... ...+....+.+...++.+++++++..++.
T Consensus 248 L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~ 326 (485)
T PRK10815 248 LVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASM 326 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555556677899999999999999999999988765321 12233445677888899999999999988
Q ss_pred cCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 008718 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (556)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~ 485 (556)
..+...+..+.+++..++++++..+......+++.+.++++++. .+.+|+..+.+++.||+.||+||++++ +.+...
T Consensus 327 ~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~ 403 (485)
T PRK10815 327 RSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLEF-VEISAR 403 (485)
T ss_pred hcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEE
Confidence 88777778889999999999999999888889999888776543 356799999999999999999999753 444443
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..++ .+.|+|+|||+|||++.++++|+||++.+.. .+|+|+||++||+
T Consensus 404 ~~~~--------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~---~~G~GLGL~Ivk~ 451 (485)
T PRK10815 404 QTDE--------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL---RPGQGLGLSVARE 451 (485)
T ss_pred EeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC---CCCcchhHHHHHH
Confidence 3322 3899999999999999999999999976543 2589999999974
No 23
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.92 E-value=7.1e-24 Score=224.13 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHH
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ 421 (556)
+...+++..++|++||||+.|.++++.+.....+.......+.+.+....+...+..+.++.. ........++|+..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHH
Confidence 345667888889999999999999999876533322233344444445555555555555443 22244566899999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe---EEEEEeeeCCCCCCCCCCC
Q 008718 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPP 498 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~---~~i~~~~~~~~~~~~~~~~ 498 (556)
++++++..+...+..+++.+.++.+...+. +.+|+.++.+|+.||++||+||+++++ ..+.+.....++
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~------- 422 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD------- 422 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC-------
Confidence 999999999988888999999887766664 668999999999999999999986652 223332222211
Q ss_pred CCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|+|||+|||++.+++||+|||+++... .+|+||||++||+
T Consensus 423 -----------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~i~~~ 467 (494)
T TIGR02938 423 -----------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLSVAQE 467 (494)
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHHHHHH
Confidence 48999999999999999999999999987653 4699999999984
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.92 E-value=9.6e-24 Score=228.75 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~ 401 (556)
++.+..+.+..+..++++..+...++++.++||++||++.|.+.++.+.....+++..++++.+.+.++++..+++++..
T Consensus 463 EIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~ 542 (703)
T TIGR03785 463 EIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSE 542 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666677777778899999999999999999999999987777778888999999999999999999999
Q ss_pred hhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEE
Q 008718 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (556)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~ 481 (556)
+++.+........+++++.+++++++..+......+++.+.++ .+. ..+.+|+..+.+++.||+.||+||+++++.+
T Consensus 543 ~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~~-~~i~~d~~~L~~il~NLI~NAik~s~~~~~I 619 (703)
T TIGR03785 543 ATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ETP-LVMRGSPELIAQMLDKLVDNAREFSPEDGLI 619 (703)
T ss_pred HHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CCC-eEEEECHHHHHHHHHHHHHHHHHHCCCCCeE
Confidence 9998877667778899999999999999988877666665553 332 2577899999999999999999999876543
Q ss_pred EEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCC-CCcceeeecccC
Q 008718 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRR 556 (556)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~-~G~GlGL~i~k~ 556 (556)
.+....+++ .+.|+|+|||+|||++..+++|+||++++...... +|+||||++||+
T Consensus 620 ~I~~~~~~~-------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~ 676 (703)
T TIGR03785 620 EVGLSQNKS-------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRL 676 (703)
T ss_pred EEEEEEcCC-------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHH
Confidence 333333332 38999999999999999999999999877544333 489999999974
No 25
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.92 E-value=5.3e-23 Score=203.25 Aligned_cols=182 Identities=21% Similarity=0.300 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccee
Q 008718 345 NDFRAVMNHEMRTLMHAIIALSSLLLET---DLT---PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (556)
Q Consensus 345 ~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~---~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~ 418 (556)
++-++-++||+||||+-|...++.+..+ ..+ +..++..+.|.+++..+.++++++..|+|+. .+..++.|
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~d 562 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKSD 562 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcch
Confidence 3455668999999999999999988764 222 2357788999999999999999999999965 56667999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCC-----Ce-EEEEEeeeCCCCC
Q 008718 419 LQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-----GY-VSIIASVAKPESL 492 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~-----g~-~~i~~~~~~~~~~ 492 (556)
|+++++++...++.. ...+.+..+...+ |....+|+..+.|+|.|++.||.++..+ +. ..+.......++
T Consensus 563 L~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g- 638 (712)
T COG5000 563 LRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG- 638 (712)
T ss_pred HHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC-
Confidence 999999999998764 3567777777655 6667779999999999999999998632 11 122222222221
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+++.|.|||.|+|.+.+.++||||.|++. +||||||+||||
T Consensus 639 -----------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~-----KGTGLGLAiVKk 680 (712)
T COG5000 639 -----------------RIVVDVIDNGKGFPRENRHRALEPYVTTRE-----KGTGLGLAIVKK 680 (712)
T ss_pred -----------------eEEEEEecCCCCCChHHhhhhccCceeccc-----ccccccHHHHHH
Confidence 499999999999999999999999999874 599999999996
No 26
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.91 E-value=2e-23 Score=210.94 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeH-HHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL-QIV 422 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l-~~l 422 (556)
...|.+.++||+||||+.+.+.++.+..... .+ .+.+.+..+++...+++++.+++...........++++ .+.
T Consensus 137 ~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~ 211 (356)
T PRK10755 137 ERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDV 211 (356)
T ss_pred HHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHH
Confidence 4568999999999999999999988765322 22 33455667788999999999999766555556667888 889
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
+..+...+......+++.+.++.++ .+..+.+|+..+.+++.|+++||+||+++++.+.+....+++
T Consensus 212 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~------------ 278 (356)
T PRK10755 212 ILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG------------ 278 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC------------
Confidence 9998888888887788877764333 334577899999999999999999999765433333333333
Q ss_pred CCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+|||++..+++|++|++.+.. .+|+|+||++||+
T Consensus 279 -------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GlGL~i~~~ 322 (356)
T PRK10755 279 -------GAVLAVEDEGPGIDESKCGELSKAFVRMDSR---YGGIGLGLSIVSR 322 (356)
T ss_pred -------EEEEEEEECCCCCCHHHHHHhCCCeEeCCCC---CCCcCHHHHHHHH
Confidence 3899999999999999999999999976432 3689999999974
No 27
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.91 E-value=6.5e-23 Score=215.16 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+....+.....++++..+.+.++.+.++||++|||+.+.+.++.+.+.... ...+.+..+...++++..+++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666677788899999999999999999999998765322 223457778888999999999999
Q ss_pred HhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008718 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~ 480 (556)
.+++.+.+...+...++++.+++++++..++.....+++.+.+++++.. .+.+|+..+.|++.||+.||++|+++++.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999888888888999999999999999999888888888888775543 35579999999999999999999987544
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+.....++ .+.|+|.|||+|||++.++++|+|||+++.... ..+|+|+||++||+
T Consensus 374 I~i~~~~~~~-------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~ 431 (466)
T PRK10549 374 LHISAEQRDK-------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLN 431 (466)
T ss_pred EEEEEEEcCC-------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHH
Confidence 3333333333 399999999999999999999999998865532 33589999999974
No 28
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.90 E-value=1.1e-22 Score=212.92 Aligned_cols=212 Identities=26% Similarity=0.442 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDV 399 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 399 (556)
+++.+....+....+++.+..+...++...++||+||||+.+.+.++.+.... ..++..+.++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666667777777888999999999999999999998876543 33455677888888899999999999
Q ss_pred HHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe
Q 008718 400 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY 479 (556)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~ 479 (556)
+.+++.+.........++++.++++++.+.+......+++.+.++ .. ..+.+|+..+.+++.|+++||+||+++++
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999888778888899999999999999988877788776654 32 34677999999999999999999997754
Q ss_pred -EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 480 -VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 480 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+.... +++ .+.|+|.|||+|||++..+++|++||+++...+ ..+|+|+||++||+
T Consensus 374 ~I~i~~~~-~~~-------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 374 TITVRIER-RSD-------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred eEEEEEEe-cCC-------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 4443333 332 389999999999999999999999998765532 34689999999974
No 29
>PRK10337 sensor protein QseC; Provisional
Probab=99.90 E-value=1.9e-22 Score=210.56 Aligned_cols=209 Identities=22% Similarity=0.313 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008718 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
++.+....+....+++++..+...+|++.++||++||++.+.+.++.+.....+++ ..+++..+...++++..++++++
T Consensus 215 Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll 294 (449)
T PRK10337 215 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLL 294 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555556666666789999999999999999998887765444443 45688889999999999999999
Q ss_pred HhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008718 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~ 480 (556)
.+++.+........+++++.+++++++..+......+++.+.++.++.. ..+.+|+..+.+++.|+++||+||+++++.
T Consensus 295 ~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~ 373 (449)
T PRK10337 295 TLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGSV 373 (449)
T ss_pred HHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 9999877665567789999999999999998888889999988875443 335679999999999999999999987654
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.+.... ..++|+|||+|||++..+++|+|||+.+.. ..+|+|+||++||+
T Consensus 374 i~i~~~~-----------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~iv~~ 424 (449)
T PRK10337 374 VDVTLNA-----------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSIVRR 424 (449)
T ss_pred EEEEEEe-----------------------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHHHHH
Confidence 3322211 368999999999999999999999976432 34589999999974
No 30
>PRK09835 sensor kinase CusS; Provisional
Probab=99.90 E-value=4.9e-22 Score=209.48 Aligned_cols=212 Identities=20% Similarity=0.371 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
++.+....+....+++++..+.+.+|++.++||++||++.+.+.++.+..... ..+..+.+..+.+...++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666677889999999999999999998887765433 33455667777888899999999999
Q ss_pred HhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe-
Q 008718 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~- 479 (556)
.+++.+.....+...++++.++++++...+......+++.+.+.. . +..+.+|+..+.+++.|++.||+||+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999988877777788999999999999999988877877776642 2 334677999999999999999999998765
Q ss_pred EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+..... ++ .+.++|.|||.|||++.++++|+|||+.+.... ..+|+|+||++||+
T Consensus 397 I~i~~~~~-~~-------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~ 454 (482)
T PRK09835 397 ITVRCQEV-DH-------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKS 454 (482)
T ss_pred EEEEEEEe-CC-------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHH
Confidence 44444333 22 389999999999999999999999998765432 33599999999974
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.89 E-value=3.4e-22 Score=199.98 Aligned_cols=192 Identities=29% Similarity=0.432 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ 421 (556)
+.+|.+.++|+++|||+.|.++++.+... ..++...++++.+....+++..+++++.++++.+.+.......++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 44688999999999999999999988754 3455667789999999999999999999999988777778888999999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCC
Q 008718 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
++..+...+......+++.+.+..+ . +..+.+|+..+.+++.||+.||++|+++++.+.+.....++
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~----------- 260 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG----------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC-----------
Confidence 9999999999998888888888773 2 33567899999999999999999999765543333333332
Q ss_pred CCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCC-CCCCCcceeeecccC
Q 008718 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSS-CQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~-~~~~G~GlGL~i~k~ 556 (556)
.+.+.|.|||+|||++..+++|+|||+.+... ....|+|+||++||+
T Consensus 261 --------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~ 308 (333)
T TIGR02966 261 --------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKH 308 (333)
T ss_pred --------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHH
Confidence 28999999999999999999999999765443 234689999999874
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.89 E-value=6.8e-22 Score=208.01 Aligned_cols=191 Identities=27% Similarity=0.415 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
...++.+.++|+++||++.+.+.++.+......++..++++.+.+..+++..+++++..+++++.........++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578899999999999999999999887655667788999999999999999999999999887766667789999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEeeeCCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
++++...+......+++.+.++.+ +..+..|...+.+++.|+++||+||+.++ .+.+..... ++
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~-~~----------- 399 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD-GE----------- 399 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-CC-----------
Confidence 999999999888889988888764 33466799999999999999999999764 444444433 32
Q ss_pred CCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||.|||++.++++|++|++.....+..+|+|+||++||+
T Consensus 400 --------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~ 446 (475)
T PRK11100 400 --------QVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVRE 446 (475)
T ss_pred --------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHH
Confidence 39999999999999999999999999876544445699999999974
No 33
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.89 E-value=8.8e-22 Score=198.35 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
..+.|++.++||+||||+.|.++++++.+...++..+++++.+.+.++++..++++++.+.+. ....+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~------~~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRP------GTHVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CCCccccHHHH
Confidence 356799999999999999999999998877667778889999999999999999999877653 22346799999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC-CCCe-EEEEEeeeCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-KEGY-VSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~-~~g~-~~i~~~~~~~~~~~~~~~~~~ 500 (556)
++.+...+.... .+++.+.++.+++.+. +.+|+..+.+++.||++||++|+ ++++ +.+.........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888887655 3567777777666554 56799999999999999999997 4333 333221111000
Q ss_pred CCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.........+.+.|.|||+|||++..+++|+|||+++. .|+|+||++||+
T Consensus 272 -~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-----~g~GlGL~i~~~ 321 (348)
T PRK11073 272 -LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARN 321 (348)
T ss_pred -cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-----CCccCCHHHHHH
Confidence 00001111368999999999999999999999998753 489999999974
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.88 E-value=2.1e-21 Score=203.54 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+....+....+++++..+.+.+|.+.++||++|||+.+.+..+.+.....+. ..+..+....+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677777777888999999999999999999888776543322 245668888999999999999
Q ss_pred HhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008718 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~ 480 (556)
.+++.+.. ..+..+.+++..+++++++.+.......++.+.++..++ +..+.+|+..+.+++.|+++||+||++ +.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997654 356777899999999999988877777888888764333 335678999999999999999999997 445
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.....++ .+.++|.|||+||+++.++++|+|||+++.... ..+|+|+||++||+
T Consensus 374 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~ 430 (461)
T PRK09470 374 EVAFSVDKD--------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVEN 430 (461)
T ss_pred EEEEEEECC--------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHH
Confidence 555444333 389999999999999999999999998765433 33589999999874
No 35
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.88 E-value=1.4e-21 Score=203.22 Aligned_cols=201 Identities=20% Similarity=0.343 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+....+....+++++..+.+..|+++++||+||||+.+.+.++.+... .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777778888999999999999999999888776432 12334567888999999999999
Q ss_pred HhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008718 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~ 480 (556)
++.+.... ....++++.+++++++.... ..+..+.++++.. +..+.+|+..+.+++.||++||+||+. +.+
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~~-~~i 351 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYGN-GWI 351 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhCC-CeE
Confidence 99886532 34568899999999887654 3455566665544 335678999999999999999999984 556
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.....++ .+.|+|.|||+|||++..+++|+||++.+... ..+|+|+||++||+
T Consensus 352 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-~~~g~GlGL~iv~~ 406 (435)
T PRK09467 352 KVSSGTEGK--------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-GSSGTGLGLAIVKR 406 (435)
T ss_pred EEEEEecCC--------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-CCCCeehhHHHHHH
Confidence 555544322 38999999999999999999999999865443 23699999999974
No 36
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.87 E-value=2.3e-18 Score=184.52 Aligned_cols=329 Identities=15% Similarity=0.133 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc
Q 008718 123 KNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (556)
.++..+.+++...++++++.+..|+..++.+..+.+..+.++.+.+.+.+.++++.+.+.+.+.....-...........
T Consensus 199 ~~l~~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (569)
T PRK10600 199 AVLEQRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSDMT 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCccC
Confidence 44455566666678888888899999999999999999999999999999999999999887654333211111110000
Q ss_pred cCcccccCChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc
Q 008718 203 IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (556)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~ 282 (556)
.....+..+... .....+....+.+| +..+...+|++....
T Consensus 279 ------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--------------l~~~~~~~G~~~~~~ 319 (569)
T PRK10600 279 ------CDDKGCQLCPRG-------------------VLPVGDRGTTLKWR--------------LSDKHGQYGILLATL 319 (569)
T ss_pred ------cccccccccccc-------------------CCCcCCCCceEEEE--------------eecCCcceEEEEEEc
Confidence 000000000000 00000012233455 556666788887776
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008718 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (556)
Q Consensus 283 ~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I 362 (556)
..+..+++.+..+++.++.+++.++...+... ..+++ ...+++..+++.++|.+.++|..+
T Consensus 320 ~~~~~l~~~~~~ll~~l~~~l~~~l~~~~~~~-----------~~~~~--------~~~~er~~iarelhd~i~~~L~~l 380 (569)
T PRK10600 320 PQGRHLSHDQQQLVDTLVEQLTATLALERQQE-----------RQQQL--------IVMEERATIARELHDSIAQSLSCM 380 (569)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------HHHHHHHHHHHHhccHHHHHHHHH
Confidence 66678999999999999999998875432211 00000 111224457777888888888888
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCce
Q 008718 363 IALSSLLLE--TDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (556)
Q Consensus 363 ~~~~~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (556)
...+..+.. ...+++.++.++.+....+++...+++++...+. .....++.+.++++++.+.... +..
T Consensus 381 ~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~ 450 (569)
T PRK10600 381 KMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFP 450 (569)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCe
Confidence 776665543 2345677788999999999999999998876653 3346788899999988877543 344
Q ss_pred EEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCC
Q 008718 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (556)
Q Consensus 441 ~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~ 520 (556)
+.++.+.........++..+.+++.|+++||+||++++.+.+.....++ .+.++|.|||+
T Consensus 451 i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~--------------------~~~l~V~D~G~ 510 (569)
T PRK10600 451 VKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQN--------------------QVKLSVQDNGC 510 (569)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC--------------------EEEEEEEECCC
Confidence 5554432222222224456999999999999999988776666544322 39999999999
Q ss_pred CCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 521 Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|||++.. .|+|+||++||+
T Consensus 511 Gi~~~~~-----------------~~~glGL~i~~~ 529 (569)
T PRK10600 511 GVPENAE-----------------RSNHYGLIIMRD 529 (569)
T ss_pred CCCcccc-----------------CCCCccHHHHHH
Confidence 9998631 257899999873
No 37
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-20 Score=176.87 Aligned_cols=185 Identities=19% Similarity=0.268 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLL---ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
.++-+..++||++.||++++.|+-... ++..+.....+++++..-.+|+..+++.+..|+|-.+++. ...|++|+
T Consensus 451 VGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~--~lqpV~L~ 528 (673)
T COG4192 451 VGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDE--SLQPVRLN 528 (673)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcccccHH
Confidence 456678899999999999999865544 3455667789999999999999999999999999766643 34599999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCC
Q 008718 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~ 500 (556)
..++.+.+.++...+.+.+.+.. |....++.+|...++||+.|++-||++++.-....+.+.....+.
T Consensus 529 ~~v~~AweLl~~khk~rQ~~Li~---ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~--------- 596 (673)
T COG4192 529 SVVEQAWELLQTKHKRRQIKLIN---PTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQ--------- 596 (673)
T ss_pred HHHHHHHHHHHhhhhhccccccC---CcccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCcc---------
Confidence 99999999999887777666543 334457899999999999999999999875433344443332211
Q ss_pred CCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeeccc
Q 008718 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
..+++.|.|||+|.|-+..+++|.||.++|.. |.|+||+||.
T Consensus 597 --------e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v-----gLGlGLSIsq 638 (673)
T COG4192 597 --------EMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV-----GLGLGLSISQ 638 (673)
T ss_pred --------cceEEEEecCCCCCchhHHHHhcCCccccccc-----ccccchhHHH
Confidence 12999999999999999999999999877643 8999999984
No 38
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.85 E-value=5.5e-20 Score=199.53 Aligned_cols=185 Identities=25% Similarity=0.427 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+..++++.++||++|||+.|.++++.+.....+++..+.++.+.+..+++..++++++.+++... ....++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE----SQWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc----CccceecHHHH
Confidence 35679999999999999999999999887766777889999999999999999999999988643 34568999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEeeeCCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
++++...+......+++.+.++.+++.+. +..|+..+.+++.|++.||+||...+ .+.+......+.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 99999999877667888888887766554 55699999999999999999998754 344443333222
Q ss_pred CCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+|||++..+++|+||++++. .|+|+||++||+
T Consensus 533 --------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-----~g~glGL~~~~~ 574 (607)
T PRK11360 533 --------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA-----KGTGLGLALSQR 574 (607)
T ss_pred --------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC-----CCCchhHHHHHH
Confidence 289999999999999999999999997653 489999999874
No 39
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-17 Score=158.82 Aligned_cols=350 Identities=13% Similarity=0.134 Sum_probs=233.0
Q ss_pred hhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--------------cH--HHHHHHHHHHHH
Q 008718 67 LTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVK--------------TR--ELFLKNRADELD 130 (556)
Q Consensus 67 ~~h~l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~~a~~l~~~ip~~l~~~--------------~~--~~~~~~~~~~l~ 130 (556)
++.++.++++|+.. . -+++|+-.+++.+-.|.---|-.....-. +. ..+.+.+++++.
T Consensus 159 ~~~~~~~~~i~~lr---~---~vv~Pl~~L~~~a~ri~~r~F~~~~~~t~~~Elg~L~~~FNqMs~EL~~lY~~LE~rV~ 232 (574)
T COG3850 159 LILLLVVFTIYWLR---R---RVVRPLNQLTSAAQRIGRRQFDQRPTDTGRNELGLLGRAFNQMSGELKKLYADLEQRVE 232 (574)
T ss_pred HHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555321 2 35667777777777775433332222211 11 122367888899
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccC
Q 008718 131 REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPIN 210 (556)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (556)
++...++.+++.+..+++.++.+.++...++.++.+.+.+....++.++.+.+.++++......+.-......+
T Consensus 233 eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~di~~~------ 306 (574)
T COG3850 233 EKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQWDISEG------ 306 (574)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCcceecC------
Confidence 99999999999999999999999999999999999999999999999999999987665443322211100000
Q ss_pred ChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcccc
Q 008718 211 LPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (556)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~ 290 (556)
+...+..-....| +...+..+|.+.. .+...+
T Consensus 307 ------------------------------d~~~~~~~~~~~~--------------l~~~g~~Lg~l~~----~~~l~~ 338 (574)
T COG3850 307 ------------------------------DQPSGLKWPQEDP--------------LTQQGHLLGTLPW----QRSLPE 338 (574)
T ss_pred ------------------------------CCCcccchhhhcc--------------hhhhhhhheeeec----cCCCCC
Confidence 0000000001112 3333344555544 447888
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008718 291 HELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLL 370 (556)
Q Consensus 291 ~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~ 370 (556)
.+..++.+++.+++.++.....- ++..+|- ..+++.-+++.+|+.+-+.|+.+.-.+++|.
T Consensus 339 ~d~~Ll~tl~~~L~rtL~~~~~q-----------~~~qQLl--------lmEERatIAReLHDSiAQsLS~LkiQvt~L~ 399 (574)
T COG3850 339 DDQQLLDTLVQQLGRTLALNKQQ-----------EQQQQLL--------LMEERATIARELHDSIAQSLSFLKIQVTLLK 399 (574)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988533211 1111111 1233566777778888888888877777776
Q ss_pred cC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCC
Q 008718 371 ET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAP 447 (556)
Q Consensus 371 ~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~ 447 (556)
.. ...++.++.+..++........-+.+++.-.| +..+.-++...++++++.+... .++.+++++.-
T Consensus 400 ~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~~q---tg~~~~l~~ql 469 (574)
T COG3850 400 TAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFSNQ---TGITVTLDYQL 469 (574)
T ss_pred hhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCchHHHHHHHHHHHHhc---cCCeEEEeccC
Confidence 53 44556778888888888877777777776555 4445677888889988888764 56777766532
Q ss_pred CCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCC
Q 008718 448 ELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 448 ~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
.......--..++-||+++.++||+||+.+.++.+.+....++ +.+.|+|||+|||+.
T Consensus 470 p~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 470 PPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTVEDNGVGIDEA 527 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEEeeCCcCCCCc
Confidence 2211111133568899999999999999999888887766543 999999999999986
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.84 E-value=1e-18 Score=182.38 Aligned_cols=223 Identities=16% Similarity=0.199 Sum_probs=150.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008718 288 WRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREA-EKAIHARNDFRAVMNHEMRTLMHAIIALS 366 (556)
Q Consensus 288 ~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~l~~~i~Hel~~pL~~I~~~~ 366 (556)
|.....+++..++.++...+.-.....+.++.+++++++..+.++..+++ +..++.+.++++.++||++|||++|.+.+
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34444566666666655444434434333333333333222222222222 22234567899999999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEe
Q 008718 367 SLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIM 445 (556)
Q Consensus 367 ~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~ 445 (556)
+.+.+.. .+++.++..+.+.+.++++.+.++++++..+ +...+++++.+.++++.+.+.... .++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELED--RGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHhh--cCceEEEEe
Confidence 8876543 3345567788888889999999999886554 334457899999999998886543 445555554
Q ss_pred CCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCC
Q 008718 446 APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 446 ~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
+.+.......++..+.++++|+++||+||++++.+.+.....++ .+.++|+|||+|||++
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------------------~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------------------RLMLVIEDDGSGLPPG 456 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--------------------EEEEEEEECCCCCCcC
Confidence 43333344457788999999999999999988876665544333 3999999999999975
Q ss_pred ChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 526 DIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 526 ~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. .|+|+||++||+
T Consensus 457 ~------------------~~~GLGL~ivr~ 469 (495)
T PRK11644 457 S------------------GQQGFGLRGMRE 469 (495)
T ss_pred C------------------CCCCCcHHHHHH
Confidence 2 257999999874
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.83 E-value=4.7e-19 Score=176.66 Aligned_cols=188 Identities=36% Similarity=0.576 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ccccccceeHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS-LELDNGPFNLQI 421 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~-~~l~~~~~~l~~ 421 (556)
.+..+...++|+++||++.+.+..+.+.... .....+.+..+....+++..++++++.+++.+... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGL-LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 3678999999999999999999888555442 11256778888889999999999999999987652 334466788999
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCC
Q 008718 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
+++++...+.......++.+....+ .+..+.+|+..+.+++.||+.||+||++.+.+.+.....++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999888777777775543 23346678999999999999999999984444444443332
Q ss_pred CCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|.|||+||+++.++++|+||++++.... |+|+||++||+
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i~~~ 302 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAIVKR 302 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHHHHH
Confidence 399999999999999999999999999886642 89999999974
No 42
>PRK13557 histidine kinase; Provisional
Probab=99.81 E-value=9.1e-19 Score=187.39 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccce
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
...+++..++|+++|||+.|.++++.+... .......+.++.+.+.++++..++++++.+++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 356788999999999999999999987643 2334567788999999999999999999998743 3455678
Q ss_pred eHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCC
Q 008718 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
++..+++.+...+.... .+++.+.+..++..+. +..|+..+.+++.||+.||+||++.++.+.+........ .
T Consensus 238 ~l~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~-----~ 310 (540)
T PRK13557 238 NLNGLVSGMGELAERTL-GDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIE-----D 310 (540)
T ss_pred CHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccC-----c
Confidence 99999998887765433 4667777766555544 556999999999999999999997655433222211100 0
Q ss_pred CCCCC-CCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 498 PEFYP-VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~-~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.... .....+.++.|+|.|||+|||++..+++|+|||+++.. ..|+|+||++||+
T Consensus 311 ~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~---~~g~GlGL~i~~~ 367 (540)
T PRK13557 311 EDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE---GKGTGLGLSMVYG 367 (540)
T ss_pred cccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---CCCCCccHHHHHH
Confidence 00000 00112235899999999999999999999999987643 3599999999974
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.78 E-value=4.7e-18 Score=190.93 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 008718 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (556)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~ 410 (556)
+++++++++++++++.|+++|+||+||||+.|.++++++.....+++...++.........+....+.+..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 662 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQ--------- 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34455566667778999999999999999999999999887766776666666555555555555444432
Q ss_pred cccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEee
Q 008718 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASV 486 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~----g~~~i~~~~ 486 (556)
.....++++.++++++...+..........+.+.++.+.......+...+.+|+.||++||+||+.+ |.+.+....
T Consensus 663 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 663 SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2244578999999999999988776666666666655544434445667889999999999999743 344444333
Q ss_pred eCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..++ ++.|+|+|||+|||++... ..|+||||+|||+
T Consensus 743 ~~~~-------------------~v~i~V~D~G~GI~~~~~~---------------~~~~gLGLai~~~ 778 (807)
T PRK13560 743 QGDG-------------------MVNLCVADDGIGLPAGFDF---------------RAAETLGLQLVCA 778 (807)
T ss_pred cCCC-------------------EEEEEEEeCCCcCCccccc---------------cccCCccHHHHHH
Confidence 2122 4999999999999997421 1367899999984
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.77 E-value=4.4e-15 Score=147.38 Aligned_cols=166 Identities=20% Similarity=0.250 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
-++..+||..|-|++|.|++++-.- .+..+.|.+.+..-.+.++.+..-.+ . ..+...
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~y-------d~a~~~I~~~~~~qq~~~~~l~~~i~-----------~----~~lAg~ 393 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGEY-------DDALDYIQQESEEQQELIDSLSEKIK-----------D----PVLAGF 393 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHhhhhhhHHHHHHhcc-----------c----HHHHHH
Confidence 4456799999999999999886432 23333444444444455554433211 1 122223
Q ss_pred HHHHHhhhhcCCceEEEEeCCCCCce-eEccHHHHHHHHHHHHHHHhhcCC--CCeEEEEEeeeCCCCCCCCCCCCCCCC
Q 008718 427 IKLIKPVASCKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAKPESLSDWRPPEFYPV 503 (556)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~d~~~l~~il~nLl~NAik~~~--~g~~~i~~~~~~~~~~~~~~~~~~~~~ 503 (556)
+---...+++.++.+.++....++.. ...+...+--++-||++||+.+.. ++...+.+...+.++
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~------------ 461 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD------------ 461 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC------------
Confidence 32233344568888888766555432 123778899999999999999874 222333333322221
Q ss_pred CCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 504 STDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 504 ~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+||||||||+..+++|+..|+++.. .|.|+|||+||+
T Consensus 462 ------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq 504 (537)
T COG3290 462 ------ELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQ 504 (537)
T ss_pred ------EEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHH
Confidence 4999999999999999999999999999873 478999999984
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.72 E-value=1.1e-15 Score=163.66 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHH
Q 008718 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (556)
Q Consensus 346 ~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (556)
++++.++||++|||++|.+++++... ++..+++. +..++....++++....+ . ++ +..++
T Consensus 341 ~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~------~----~~-~~~~~-- 400 (542)
T PRK11086 341 DALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYIL---KTANNYQEEIGSLLGKIK------S----PV-IAGFL-- 400 (542)
T ss_pred HHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHH---HHHHHHHHHHHHHHHhcc------C----HH-HHHHH--
Confidence 45566799999999999998876432 22223322 222222222222222111 0 11 11111
Q ss_pred HHHHHHhhhhcCCceEEEEeCCCCCcee-EccHHHHHHHHHHHHHHHhhcCC---CCeEEEEEeeeCCCCCCCCCCCCCC
Q 008718 426 VIKLIKPVASCKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~d~~~l~~il~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
......+..+++.+.++.++..+... ..+...+.+++.||++||+||+. .+.+.+.....++
T Consensus 401 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~------------ 466 (542)
T PRK11086 401 --LGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG------------ 466 (542)
T ss_pred --HHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC------------
Confidence 11222334577777776655444321 12345799999999999999974 2344444333222
Q ss_pred CCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++..+++|+||++++. .|+|+||++||+
T Consensus 467 --------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-----~g~GlGL~iv~~ 508 (542)
T PRK11086 467 --------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-----SNRGVGLYLVKQ 508 (542)
T ss_pred --------EEEEEEEECCCCCCHHHHHHHHhCCCccCC-----CCCcCcHHHHHH
Confidence 389999999999999999999999998763 489999999974
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.68 E-value=1.2e-15 Score=163.37 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
.++.++||++|||++|.++++.- ...+.++.+...+..+..+++.+...... -.+... +
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~-----------~~~~~~---l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD-----------RQVAGL---L 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc-----------HHHHHH---H
Confidence 44557999999999999987652 22345667777788888888877664321 011111 1
Q ss_pred HHHHHhhhhcCCceEEEEeCCCCCc-eeEccHHHHHHHHHHHHHHHhhcC---CCC--eEEEEEeeeCCCCCCCCCCCCC
Q 008718 427 IKLIKPVASCKKLSMTLIMAPELPT-YAVGDEKRLMQTILNIVGNAVKFT---KEG--YVSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAik~~---~~g--~~~i~~~~~~~~~~~~~~~~~~ 500 (556)
... ...+.+.++.+.+..+..... ....|+..+.+++.||++||++|+ +++ .+.+... ..++
T Consensus 400 ~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~-~~~~---------- 467 (545)
T PRK15053 400 FGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLS-DEGD---------- 467 (545)
T ss_pred HHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEE-ECCC----------
Confidence 111 222335677776654332211 134589999999999999999995 333 2333322 2222
Q ss_pred CCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+|||++..+++|+|||+++... .+|+|+||++||+
T Consensus 468 ---------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ivk~ 512 (545)
T PRK15053 468 ---------DVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYLIAS 512 (545)
T ss_pred ---------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHHHHH
Confidence 38999999999999999999999999876542 3479999999974
No 47
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-17 Score=181.30 Aligned_cols=554 Identities=38% Similarity=0.469 Sum_probs=399.3
Q ss_pred CCcccCCC--CCCChhhhHHHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhhhhHHHHHHh-cc
Q 008718 2 ESCDCIDT--QWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP-YRWVLMQFGSFIILCGLTHFISLWT-FT 77 (556)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~fi~~~g~~h~l~i~~-~~ 77 (556)
++|+|.+. .|++........+.+|.+++.|||++|..++||..+...++ +.|....|..|...|+++|.+..|+ ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 68999975 88888766677889999999999999999999999888774 8899999999999999999999997 33
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHH---HHHHHHHHHHhhhHHHHhHHHHHHHHHHH
Q 008718 78 VHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNR---ADELDREMGLILTQEETGRHVRMLTHEIR 154 (556)
Q Consensus 78 ~~~~~~~~~~~~~~~~~a~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 154 (556)
+....++......+..++.++..++...+..+|..+..+.++...++. +.++.++......+..........+..+.
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 444455555566788888999999999999999999999999999888 88899988888888888888888888899
Q ss_pred ccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc----cccCcccccCChhHHHhhcccCceEecCCC
Q 008718 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ----IQIGSSVPINLPIVTDVFNSAQAMRLPYNC 230 (556)
Q Consensus 155 ~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
...+...+++.......+.+..+-+..|.+.+..-.....|.+..+ .......+..+.....+++..+........
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999998887755444444444333 111223333444555555554444333332
Q ss_pred chhhh-hhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH-
Q 008718 231 PLARI-RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS- 308 (556)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~- 308 (556)
-...+ ...............++++.+........++......+..-++.+..+.++.|...+..+-..++++++.++.
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 22221 1112223455566677777777766666777788888888888888888899999999999999999999997
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 008718 309 -HAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQRVMIETVL 386 (556)
Q Consensus 309 -~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~-~~~~~~~~~~l~~i~ 386 (556)
++.-.+.....++++.+.+..+..++++...+...+..+.....|..++|.+.+.+....+.. ....++..-.++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 555555555556666677777777766666666667777777789999999999887774443 233333333444555
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHH
Q 008718 387 KSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILN 466 (556)
Q Consensus 387 ~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~n 466 (556)
+.......+++.-.+..+...+..........+..++.............+...+.+.+..+.+..+.++..+..+++.+
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILD 509 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhh
Confidence 66666777777777777765555555666788999999999988887777777888887777777777788888999999
Q ss_pred HHHHHhh--cCCCCeE-EEEEeeeC-CCCCCCC---CCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCC
Q 008718 467 IVGNAVK--FTKEGYV-SIIASVAK-PESLSDW---RPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 467 Ll~NAik--~~~~g~~-~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
...++.+ +++.++. +..+.... +.....| ..+-+.......+-.+.+.+.|++.|.........+..+.+...
T Consensus 510 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 589 (786)
T KOG0519|consen 510 FNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD 589 (786)
T ss_pred hcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhcccc
Confidence 9999988 6665543 33332221 1111111 11111222222223588999999999999888877766655544
Q ss_pred CCCC-CCCcceeeeccc
Q 008718 540 SSCQ-TPRAGLGLAICR 555 (556)
Q Consensus 540 ~~~~-~~G~GlGL~i~k 555 (556)
...+ ..+.+++++.|+
T Consensus 590 ~~~~~~~~~~~~~~~~~ 606 (786)
T KOG0519|consen 590 LTSKLSSGSGLSLALCP 606 (786)
T ss_pred chhhcccccccccccch
Confidence 4332 134566666554
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.65 E-value=3.3e-12 Score=137.55 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=128.7
Q ss_pred ccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 271 KSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAV 350 (556)
Q Consensus 271 ~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~ 350 (556)
++..+|.+...... ...+..++..++..++.++......++. +++ +..+.+..
T Consensus 314 ~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------~~~~~~~~---- 366 (565)
T PRK10935 314 EDTVLGYLHWQASL----PCPDEPLMNNVAQMLGRGLYFNQAQKQQ-----------QQL--------LLMEERAT---- 366 (565)
T ss_pred CCcceEEEEecCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH--------HHHHHHHH----
Confidence 33345666554322 2457778888888877766332211110 000 00111222
Q ss_pred HHHHHHhHHHHHHHHHH----HHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHH
Q 008718 351 MNHEMRTLMHAIIALSS----LLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~----~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~ 424 (556)
++|++++|++.+..++. ++... ...+...+.+..+.+...++...+.+++...+ ....++++.+.+.
T Consensus 367 la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~ 439 (565)
T PRK10935 367 IARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSALE 439 (565)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHH
Confidence 56666666655554443 33322 22344556666677777777777777665433 3455889999999
Q ss_pred HHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCC
Q 008718 425 EVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVS 504 (556)
Q Consensus 425 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~ 504 (556)
+++..+... .+..+.++.+.+.......++..+.+++.|++.||+||++.+.+.+......+.
T Consensus 440 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~-------------- 502 (565)
T PRK10935 440 EMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG-------------- 502 (565)
T ss_pred HHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--------------
Confidence 999988764 334444443322222223345569999999999999999887766665544232
Q ss_pred CCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 505 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 505 ~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|.|||+|||++. ..|+|+||++|++
T Consensus 503 -----~~~i~V~D~G~Gi~~~~-----------------~~~~glGL~i~~~ 532 (565)
T PRK10935 503 -----EHTVSIRDDGIGIGELK-----------------EPEGHYGLNIMQE 532 (565)
T ss_pred -----EEEEEEEECCcCcCCCC-----------------CCCCCcCHHHHHH
Confidence 39999999999999742 1367899999873
No 49
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.60 E-value=8.1e-13 Score=123.26 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=149.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008718 290 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQ-NVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 368 (556)
Q Consensus 290 ~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~-~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~ 368 (556)
....+++-.++.|.-..+.....+.+.++.++.+.+. .+....+++-....++.+++.++.+++|+.+.+++|...+..
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4566677667666433333333333344433333221 111122333334445568899999999999999999999988
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCC
Q 008718 369 LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPE 448 (556)
Q Consensus 369 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 448 (556)
.++-..++..++..+.|++-+.++.+-++.++.-.| +...+...+.+.++.+++.++- .+++++++++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~~--~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREMEL--EERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhhh--hhcCeEEEeccccC
Confidence 888777778888888899888888888888876555 4455678888888888888764 46899988887654
Q ss_pred CCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 449 LPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 449 ~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.......-+..++++.+++++|-+||+++..+++.....++. +.++|+|||.|+|+..
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~--------------------l~Lei~DdG~Gl~~~~ 457 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDER--------------------LMLEIEDDGSGLPPGS 457 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCcE--------------------EEEEEecCCcCCCCCC
Confidence 333322344569999999999999999999888877665543 9999999999999873
No 50
>PRK13559 hypothetical protein; Provisional
Probab=99.56 E-value=5e-14 Score=142.66 Aligned_cols=159 Identities=13% Similarity=0.202 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll 423 (556)
+.+|++.++|+++|||+.|.++++++.. ..+..++++.+.+.+.++..+++++++..+ ..++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 3568888999999999999999988762 223345677788888888888888775432 4579999999
Q ss_pred HHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC---C-CCeEEEEEeeeCCCCCCCCCCCC
Q 008718 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~---~-~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
+++++.+... +..+.++.+ ..+ ....+...|.+|+.||+.||+||+ + .|.+.+.......+
T Consensus 238 ~~~~~~~~~~----~~~i~~~~~-~~~-~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~--------- 302 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEGP-GIR-LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEG--------- 302 (361)
T ss_pred HHHHHhhcCC----CceEEEECC-Cee-eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCC---------
Confidence 9998877532 444555422 211 111123469999999999999994 3 35555544212211
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..+.+.|.|||.|++++. .|+|+||.+|++
T Consensus 303 ---------~~~~i~v~d~G~~~~~~~------------------~~~g~Gl~i~~~ 332 (361)
T PRK13559 303 ---------AGFRIDWQEQGGPTPPKL------------------AKRGFGTVIIGA 332 (361)
T ss_pred ---------CeEEEEEECCCCCCCCCC------------------CCCCcHHHHHHH
Confidence 138999999999987652 367899998863
No 51
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.48 E-value=4e-10 Score=104.21 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccc---c
Q 008718 340 AIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNG---P 416 (556)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~---~ 416 (556)
.+.++.++++.+++.+.+.|-+....+++....-.++..- .-..+.+..+.+..-|+++...|. .++|. .
T Consensus 247 QedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDD 319 (459)
T COG4564 247 QEDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISH------DLRPRALDD 319 (459)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhh
Confidence 3445778889999999999999998888887753333211 113477788889999999888776 34443 3
Q ss_pred eeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCC
Q 008718 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~ 496 (556)
..|...++..++.++ .+.++.++++.+.....+.......+++|+++.++|.=+|+++.++.+......+.
T Consensus 320 LGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~------ 390 (459)
T COG4564 320 LGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGDM------ 390 (459)
T ss_pred hhHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcc------
Confidence 445555555555555 46788888877655444455567789999999999999999877777766555443
Q ss_pred CCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+.+.|+|||+|++...
T Consensus 391 --------------vql~vrDnG~GF~~~~ 406 (459)
T COG4564 391 --------------VQLMVRDNGVGFSVKE 406 (459)
T ss_pred --------------eEEEEecCCCCccchh
Confidence 9999999999998764
No 52
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.44 E-value=4.3e-14 Score=116.83 Aligned_cols=82 Identities=33% Similarity=0.599 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 008718 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 455 ~d~~~l~~il~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+|+..+.+++.||+.||++|+++ +.+.+.+...++ ++.|+|+|||+|||++.++++|+|
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 58999999999999999999987 555555555443 399999999999999999999999
Q ss_pred CcccCCCCCCCCCcceeeecccC
Q 008718 534 FAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|++.+.......|+|+||++||+
T Consensus 61 ~~~~~~~~~~~~g~GlGL~~~~~ 83 (111)
T PF02518_consen 61 FFTSDKSETSISGHGLGLYIVKQ 83 (111)
T ss_dssp TSHSSSSSGGSSSSSHHHHHHHH
T ss_pred cccccccccccCCCChHHHHHHH
Confidence 99887644445689999999873
No 53
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.41 E-value=5e-11 Score=120.48 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeH
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLL--ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
+++.++++.+|+.+..-|+++........ .+...++.++.++.+.+. +.+.++++..... .+++...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~---~~e~l~evR~~v~------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKL---LREALQEVRALVR------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH------hcCCchhhc
Confidence 66889999999999999999987222221 123334455555555444 3344444444333 333333333
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCC
Q 008718 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
..+...+...........++.+..+..+..+.+...-+..+.+++++.++||+||+++..+.+.....++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33444444444444445566666555432222334467889999999999999999999888888877664
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
+.++|.|||+|++++..
T Consensus 311 -----------l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDKE 327 (365)
T ss_pred -----------EEEEEEECCcCCCcccc
Confidence 99999999999998753
No 54
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=1.9e-10 Score=125.39 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=139.4
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEE--EEeecccc--ccC
Q 008718 129 LDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQI--QIG 204 (556)
Q Consensus 129 l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~--~~~ 204 (556)
.++..+.+.++....+.+.++++.+.++.+++++++.+++.+.+.++++.|+|+++|++...+.. +++.+... ..+
T Consensus 170 ~~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~ 249 (686)
T PRK15429 170 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 249 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhccccc
Confidence 33344445555566889999999999999999999999999999999999999999987776654 33332221 223
Q ss_pred cccccCChhHHHhhcccCceEecCCCchhhhhhc---ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec
Q 008718 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (556)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~ 281 (556)
...+...+.++.++.++++..+++...+...... .........+.+.+| |..++.++|++.+.
T Consensus 250 ~~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~v~GvL~l~ 315 (686)
T PRK15429 250 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP--------------LMSGDTMLGVLKLA 315 (686)
T ss_pred ccCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEe--------------EEECCEEEEEEEEe
Confidence 3455566889999999999999776544322110 011112346677788 66777889999997
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQN 327 (556)
Q Consensus 282 ~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l~~~~ 327 (556)
+.+...|++.|++++..+|++++++++++..+++.++..+.+.+.+
T Consensus 316 ~~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~ 361 (686)
T PRK15429 316 QCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDEN 361 (686)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHH
Confidence 7778899999999999999999999999999998877766665544
No 55
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.24 E-value=1.1e-09 Score=118.66 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecc--ccccCcccccCChhHHHhhcc
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 220 (556)
+..+.++++.+.++.+++++++.+++.+.+.+++++|.||+.|++...+.+....+. .......++...+.++.+..+
T Consensus 2 L~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~t 81 (748)
T PRK11061 2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81 (748)
T ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhcc
Confidence 346889999999999999999999999999999999999999988876665544432 222233567788899999999
Q ss_pred cCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la 300 (556)
++++.+++...++++.........+.++.+++|| ..++.++|++.+.++.++.|++.+..++..+|
T Consensus 82 g~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL--------------~~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA 147 (748)
T PRK11061 82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPI--------------IYRRQLLGVLVVQQRELRQFDESEESFLVTLA 147 (748)
T ss_pred CceEEECCcccCcccccCccccCccceEEEEEEE--------------eeCCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 9999999999888775433323455678889994 45667899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008718 301 DQVAVALSHAAILEDSM 317 (556)
Q Consensus 301 ~~~~~al~~a~~~~~~~ 317 (556)
.+++++++|++..+...
T Consensus 148 ~~aAiAL~na~l~~~~~ 164 (748)
T PRK11061 148 TQLAAILSQSQLTALFG 164 (748)
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999999999877663
No 56
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.22 E-value=2.3e-10 Score=121.32 Aligned_cols=117 Identities=16% Similarity=0.289 Sum_probs=82.6
Q ss_pred eeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHH---HHHHHHHHhhcCC------------C-CeE
Q 008718 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFTK------------E-GYV 480 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~i---l~nLl~NAik~~~------------~-g~~ 480 (556)
+.+..+++..-..++......+..+++.+.+.. ...|+..+.++ +.||+.||++|+- + |.+
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 445666666666666665555566666665543 34599999888 5699999999972 2 334
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh---------------------hhhhccCcccCC
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI---------------------PLLFTKFAQSRG 539 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~---------------------~~iF~~f~~~~~ 539 (556)
.+.... .++ .+.|+|+|||.||+++.+ +.||+|+|++..
T Consensus 420 ~l~a~~-~~~-------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEH-QGG-------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEE-cCC-------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 443333 222 399999999999998654 369999998876
Q ss_pred CCCCCCCcceeeecccC
Q 008718 540 SSCQTPRAGLGLAICRR 556 (556)
Q Consensus 540 ~~~~~~G~GlGL~i~k~ 556 (556)
..+...|.|+||++||+
T Consensus 480 ~~~~~sGrGvGL~iVk~ 496 (670)
T PRK10547 480 QVTDVSGRGVGMDVVKR 496 (670)
T ss_pred ccccCCCCchhHHHHHH
Confidence 55555799999999974
No 57
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.22 E-value=1e-09 Score=113.90 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccce
Q 008718 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
.++++++.+ +|++.|.|++|..++..-. .+.+.+++.++-++.|..- ....+..
T Consensus 258 l~~lqsqi~-----pHfL~NtL~~I~~~~~~~~------------------~~~~~~~v~~l~~llR~~l---~~~~~~~ 311 (456)
T COG2972 258 LRALQSQIN-----PHFLYNTLETIRMLAEEDD------------------PEEAAKVVKALSKLLRYSL---SNLDNIV 311 (456)
T ss_pred HHHHHhhcc-----hHHHHhHHHHHHHHHHhcC------------------HHHHHHHHHHHHHHHHHHh---hCCCCee
Confidence 334444555 9999999999998865421 2223333333333333111 1122356
Q ss_pred eHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC----CC-CeEEEEEeeeCCCCC
Q 008718 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT----KE-GYVSIIASVAKPESL 492 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~----~~-g~~~i~~~~~~~~~~ 492 (556)
++..-+.-+.+++..+..+-+..+++..+-+.... +-..+..++++|++||++|+ ++ |.+.+..... +.
T Consensus 312 ~l~~E~~~~~kyl~iq~~r~~~~le~~~~i~~~~~---~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~-~~-- 385 (456)
T COG2972 312 TLEIELLLIEKYLEIQKLRIGDRLEVPLPIDEELE---PLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ-DD-- 385 (456)
T ss_pred eHHHHHHHHHHHHHHHHhccCcceEEEeccCcccc---cccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEc-CC--
Confidence 67666666777776655444444444433222111 23446678999999999998 22 3344433333 22
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|.|||+||+++....+. ++... ..|+||.++++
T Consensus 386 -----------------~i~i~i~Dng~g~~~~~~~~~~-----~~~~~----r~giGL~Nv~~ 423 (456)
T COG2972 386 -----------------VIQISISDNGPGIDEEKLEGLS-----TKGEN----RSGIGLSNVKE 423 (456)
T ss_pred -----------------EEEEEEeeCCCCCChhHHHHHH-----hhccC----cccccHHHHHH
Confidence 4999999999999998776663 22211 15999998763
No 58
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.20 E-value=2.3e-09 Score=98.83 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll 423 (556)
+..+.+.++|.+||.|+.|.+++.+-.+...++ ..+.+.....-+..|...-+.+.. . ....++...++
T Consensus 19 ~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L~~---------s-~~~~~~~~~~~ 87 (221)
T COG3920 19 KELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYK---------S-GDDTWDFASYL 87 (221)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHhc---------C-CcceEcHHHHH
Confidence 556788899999999999999999888776665 445554444444444444433321 1 23478888888
Q ss_pred HHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCC----CCeEEEEEeeeCCCCCCCCCCCC
Q 008718 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
+.+...+.+....+.+.+....++... +......-|..|+.+|++||+||+- .|.+.|......+..
T Consensus 88 ~~L~~~l~~~~~~~~~~~~~~~~~~~~-l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~-------- 158 (221)
T COG3920 88 ELLASNLFPSYGGKDIRLILDSGPNVF-LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG-------- 158 (221)
T ss_pred HHHHHHHHHhcCCCCceEEEecCCceE-ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC--------
Confidence 888888887643455666655444311 1222345589999999999999983 465666665554431
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
...+.|+|||.|+|.+.
T Consensus 159 ----------~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 159 ----------RFLLTVWDEGGGPPVEA 175 (221)
T ss_pred ----------eEEEEEEECCCCCCCCC
Confidence 27899999999999763
No 59
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.16 E-value=3.5e-10 Score=84.00 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQ-RVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~l~~~~~~~~~ 408 (556)
+++|++.++||+||||++|.++++.+.. ...+++. +++++.+..+++++..++++++++++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6789999999999999999999999999 7777776 899999999999999999999999998764
No 60
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.11 E-value=4.2e-09 Score=111.63 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=128.9
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEE-EeeccccccCcccccCChhHHHhhcc
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQIQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (556)
++..+.++++.+.+..+++++++.+++.+.+.+++++|+|+++|+++.....+ +++.........++...+.++.++.+
T Consensus 3 ~L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~ 82 (534)
T TIGR01817 3 QLAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVAT 82 (534)
T ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhc
Confidence 36779999999999999999999999999999999999999998876654333 33332222223566678899999999
Q ss_pred cCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC-CCccccchHHHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELELIDVV 299 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~-~~~~~~~e~~ll~~l 299 (556)
++++++++...+.++.........+.++.+++| +..++.++|++.+.+.. ++.|++++.+++..+
T Consensus 83 ~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VP--------------L~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~l 148 (534)
T TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVP--------------IKADSETIGVLAADRDFRSRERLEEEVRFLEMV 148 (534)
T ss_pred CCeEEecccccCchhhhccccccCCcceEEEEE--------------EcCCCEEEEEEEEEeccccccccHHHHHHHHHH
Confidence 999999999887776432222234567889999 55778899999998865 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008718 300 ADQVAVALSHAAILEDSM 317 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~ 317 (556)
|.++++++...+.+....
T Consensus 149 A~~ia~aI~~~~~~~~~~ 166 (534)
T TIGR01817 149 ANLIGQTVRLHRLVAQRR 166 (534)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998887776443
No 61
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.01 E-value=4.9e-10 Score=116.85 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=59.1
Q ss_pred cCCceEEEEeCCCCCcee-EccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceE
Q 008718 436 CKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFY 510 (556)
Q Consensus 436 ~~~i~~~~~~~~~~~~~~-~~d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (556)
.+.+.+...+..+.+..- ..|...|.+++.|||+||++|+..++ +.+.+.. .+. +
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~-~g~-------------------~ 81 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE-VGD-------------------Y 81 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-CCC-------------------E
Confidence 356666655554443322 23567899999999999999997654 3333322 222 4
Q ss_pred EEEEEEEcCCCCCCCChhhhhccCccc
Q 008718 511 LRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
+.|.|+|||+||+++.++++|++|+++
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~t 108 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYG 108 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhccc
Confidence 899999999999999999999998754
No 62
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=99.00 E-value=7.5e-09 Score=87.66 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhh
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
|++++++.+++.+.+.+++++++||++|++...+...+.++........++...+.+..++.++++...++.....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERD---- 76 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-T----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccccc----
Confidence 5789999999999999999999999999888888877777443333346678888899999999987776544322
Q ss_pred cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHH
Q 008718 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (556)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~ 309 (556)
..+..+.+.+| +..++..+|++.+....+..|++.+.++++.+|++++++++|
T Consensus 77 -----~~~~~s~~~vP--------------l~~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 77 -----FLGIRSLLVVP--------------LRSRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTCEEEEEE--------------EEETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CCCCCEEEEEE--------------EeECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 15557778889 566668899999998888899999999999999999999965
No 63
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.93 E-value=1e-09 Score=112.32 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...|.+++.||++||++|++.++ +.+.+...+.+ +..+.|+|+|||+||+++.++++|
T Consensus 33 p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~iF 95 (535)
T PRK04184 33 PARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPKVF 95 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHHHh
Confidence 567899999999999999997643 33333322111 114899999999999999999999
Q ss_pred ccCcccCCCC---CCCCCcceeeeccc
Q 008718 532 TKFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
++|+.+.... ...+|+|+||++|+
T Consensus 96 ~~f~~~SK~~~~~~s~G~~GLGLsiv~ 122 (535)
T PRK04184 96 GKLLYGSKFHNLRQSRGQQGIGISAAV 122 (535)
T ss_pred hhhhccccccccccCCCCCCcchHHHH
Confidence 9986543221 12346899999875
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=98.88 E-value=3.9e-09 Score=90.63 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.|+++||++|+. ++.+.+.....++ .+.++|.|+|.|||+ .+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~--------------------~~~i~I~D~G~gi~~--~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH--------------------EVYITVRDEGIGIEN--LEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC--------------------EEEEEEEEcCCCcCc--hhHhh
Confidence 556799999999999999963 2334444433322 399999999999983 67899
Q ss_pred ccCcccCCCCCCCCCcceeeecccC
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+||++.+.. ..|+|+||+++++
T Consensus 94 ~~~~~~~~~---~~~~GlGL~lv~~ 115 (137)
T TIGR01925 94 EPLYTSKPE---LERSGMGFTVMEN 115 (137)
T ss_pred CCCcccCCC---CCCCcccHHHHHH
Confidence 999876532 2578999998864
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=1.5e-07 Score=102.91 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc---ccCcccccCChhHHHhhc
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI---QIGSSVPINLPIVTDVFN 219 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 219 (556)
...|.++++.+.+..|++++++.+...+.+.+.+|++.|.++|+....... +...... ..-.......++++.++.
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 456888999999999999999999999999999999999999987766554 3322211 111233456778899999
Q ss_pred ccCceEecCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHH
Q 008718 220 SAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (556)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~ 298 (556)
+++++..++..-..++... .....++-.....+| +..++.++|++++....+..|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~lgvP--------------l~~~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMP--------------LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccceEEec--------------eeeCCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988875544433222 223334555566688 6668888999998887789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 299 VADQVAVALSHAAILEDSMRARNQLMEQNVA 329 (556)
Q Consensus 299 la~~~~~al~~a~~~~~~~~~~~~l~~~~~~ 329 (556)
+|.++++|+++++.+++.++..+.+++...+
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998888777666444443
No 66
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.83 E-value=5e-09 Score=106.11 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=61.6
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhh
Q 008718 454 VGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 454 ~~d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~ 529 (556)
.++...|.+++.||++||++|+..++ +.+.......+ ++.++|+|||+||+++.+++
T Consensus 23 ~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~~ 83 (488)
T TIGR01052 23 SGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIPK 83 (488)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHHh
Confidence 34788899999999999999986532 33333222221 37899999999999999999
Q ss_pred hhccCcccCCCC---CCCCCcceeeeccc
Q 008718 530 LFTKFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 530 iF~~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
+|++|+.+.... ...++.|+||++|+
T Consensus 84 iF~rf~~tsK~~~~~~s~G~~GlGLs~~~ 112 (488)
T TIGR01052 84 VFGKMLAGSKFHRIIQSRGQQGIGISGAV 112 (488)
T ss_pred hhhhccccCccccccccCCCccEehhHHH
Confidence 999987654322 12357899999874
No 67
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.80 E-value=2.7e-08 Score=87.13 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCcccccCChhHHHhhcccCceEecCCCchhhh
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
|++++++.+++.+.+.+++++|++++++.++......+...... ..+...+...+.+.+++.+++++.+.+......+
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999999999888886666654432 2333455567789999999999999888766554
Q ss_pred hhcc---cCC------------CCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHHHHHHH
Q 008718 236 RLLV---GRY------------VPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVV 299 (556)
Q Consensus 236 ~~~~---~~~------------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ll~~l 299 (556)
.... ... ..+.++.+.+| +..++..+|++.+....+ +.|++.|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVP--------------IISGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEE--------------EEETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEee--------------eecccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 3221 111 35677888888 666777899999998886 99999999999999
Q ss_pred HHHHHHHH
Q 008718 300 ADQVAVAL 307 (556)
Q Consensus 300 a~~~~~al 307 (556)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 68
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.72 E-value=2.1e-08 Score=82.03 Aligned_cols=81 Identities=36% Similarity=0.677 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 008718 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 455 ~d~~~l~~il~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+|...+.+++.|++.||++|+.. +.+.+...... . .+.+.|.|+|.|++++...++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~-~-------------------~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG-D-------------------HLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC-C-------------------EEEEEEEeCCCCCCHHHHHHHhcC
Confidence 37788999999999999999987 44444443332 2 389999999999999999999999
Q ss_pred CcccCCCCCCCCCcceeeeccc
Q 008718 534 FAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k 555 (556)
++..+.......+.|+||++|+
T Consensus 61 ~~~~~~~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 61 FFRTDGRSRKIGGTGLGLSIVK 82 (111)
T ss_pred eEECCCCCCCCCcccccHHHHH
Confidence 8876532222357899999876
No 69
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.72 E-value=2.2e-08 Score=88.14 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|+||+++...+.|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED--------------------RLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC--------------------EEEEEEEECCcCCChHHhcccc
Confidence 5566888999999999999854 334444444332 3999999999999998888889
Q ss_pred ccCcccCCCCCCCCCcceeeecccC
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.|+++.+... ...+.|+||+++++
T Consensus 99 ~p~~~~~~~~-~~~~~G~GL~li~~ 122 (161)
T PRK04069 99 GPYDISKPIE-DLREGGLGLFLIET 122 (161)
T ss_pred CCCCCCCccc-ccCCCceeHHHHHH
Confidence 8887654432 12367999998863
No 70
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.72 E-value=7.4e-07 Score=93.71 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCCh-hHHHhhccc
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLP-IVTDVFNSA 221 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 221 (556)
+..+++++..|.++++.+++++.+++.+.+.++++.++|.+.+++......+.+..... .....+...+ .+..++.++
T Consensus 3 ~~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~-~~~~~~~geGP~l~av~~~g 81 (509)
T PRK05022 3 LDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDV-LGRRFALEEHPRLEAILRAG 81 (509)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHh-hCCccCCCcchHHHHHHhcC
Confidence 34688999999999999999999999999999999999999885422222222222222 2224444444 668888878
Q ss_pred CceEecCCCchhhh-hhc-c-cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHH
Q 008718 222 QAMRLPYNCPLARI-RLL-V-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (556)
Q Consensus 222 ~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~ 298 (556)
.++++++....+.+ ... . .....+.++.+++| +..++.++|++.++...+..|++.+..++..
T Consensus 82 ~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vP--------------L~~~~~~~GvL~l~~~~~~~f~~~~~~~l~~ 147 (509)
T PRK05022 82 DPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLP--------------LFVDGRLIGALTLDALDPGQFDAFSDEELRA 147 (509)
T ss_pred CeEEEecCCCCCcccccccccccccCCcceEEEEE--------------EEECCEEEEEEEEeeCCCCcCCHHHHHHHHH
Confidence 88888866543332 101 1 12223556889999 6667788999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 299 VADQVAVALSHAAILEDSMRARNQLMEQN 327 (556)
Q Consensus 299 la~~~~~al~~a~~~~~~~~~~~~l~~~~ 327 (556)
+|.+++.++.+++.+++.++...++....
T Consensus 148 ~a~~~a~Al~~a~~~~~l~~~~~~~~~~~ 176 (509)
T PRK05022 148 LAALAAATLRNALLIEQLESQAELPQDVA 176 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877665555443
No 71
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.69 E-value=5.8e-09 Score=114.10 Aligned_cols=207 Identities=30% Similarity=0.370 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
+...++||+++|++. +....+.....+.+.+.++............+++++++.++.+.+...+.-.++++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 888999999999987 444555556778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCC-----CCCC----
Q 008718 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLS-----DWRP---- 497 (556)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~-----~~~~---- 497 (556)
.+.+.+....++..+....+.+.|..+.+|+..+.|++.|++.||+|++..|.+.......+..... .|..
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~ 381 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHM 381 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhhhhhhh
Confidence 9999999999998888888777777788999999999999999999999988877776655432211 0100
Q ss_pred ------------------CC-CCCCCCCCceEEEEEEEEcCCCCCCCChhh-hhccCcccCCCCCC-CCCcceeeeccc
Q 008718 498 ------------------PE-FYPVSTDGHFYLRVQVNDSGCGVPPQDIPL-LFTKFAQSRGSSCQ-TPRAGLGLAICR 555 (556)
Q Consensus 498 ------------------~~-~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~-iF~~f~~~~~~~~~-~~G~GlGL~i~k 555 (556)
|. ........-..-.+.+.|+|.||+.+.... +|.+|-+......+ .+|+|+|+.+|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~ 460 (786)
T KOG0519|consen 382 AGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVF 460 (786)
T ss_pred ccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhc
Confidence 00 000000001124567889999999999887 99999876655543 469999999886
No 72
>PRK03660 anti-sigma F factor; Provisional
Probab=98.66 E-value=4.3e-08 Score=85.17 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+.+++.|++.||++|+.. +.+.+.....++ .+.++|.|+|.|||+ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~--------------------~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE--------------------ELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC--------------------EEEEEEEEccCCCCh--HHHhh
Confidence 5677899999999999999742 334444333222 389999999999986 56889
Q ss_pred ccCcccCCCCCCCCCcceeeecccC
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+||++.... ..+.|+||+++++
T Consensus 94 ~~~~~~~~~---~~~~GlGL~i~~~ 115 (146)
T PRK03660 94 QPLYTTKPE---LERSGMGFTVMES 115 (146)
T ss_pred CCCcccCCC---CCCccccHHHHHH
Confidence 999875432 2468999998763
No 73
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.61 E-value=2.6e-07 Score=98.86 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHH-
Q 008718 385 VLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT- 463 (556)
Q Consensus 385 i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~i- 463 (556)
+.+...++.++..+|.+-.- ....+.+..++...-..++.....-+-++++.+.+..- ..|+..+.++
T Consensus 366 l~~~~~~l~~~~~~LQd~vm--------~~RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~t---elDksIlE~l~ 434 (716)
T COG0643 366 LDEALRQLSRLTTDLQDEVM--------KIRMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDT---ELDKSILERLG 434 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHhceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCe---eehHHHHHHhc
Confidence 44455555566666554321 11244555555555555555555445555555555432 2288777776
Q ss_pred --HHHHHHHHhhcC-------------CCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChh
Q 008718 464 --ILNIVGNAVKFT-------------KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 464 --l~nLl~NAik~~-------------~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
+.+|+.||+.|+ +.|.+++......+ .+.|+|+|+|.||+.+.+.
T Consensus 435 dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn--------------------~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 435 DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGN--------------------NIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCC--------------------eEEEEEeeCCCCCCHHHHH
Confidence 678999999997 22444444333322 3999999999999865443
Q ss_pred ------------------------hhhccCcccCCCCCCCCCcceeeecccC
Q 008718 529 ------------------------LLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 529 ------------------------~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
-||.|.|+|....+.-.|-|.||-.||+
T Consensus 495 ~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~ 546 (716)
T COG0643 495 EKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKT 546 (716)
T ss_pred HHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhhcccCCccCHHHHHH
Confidence 3999999999988888899999998874
No 74
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.59 E-value=1.2e-06 Score=74.96 Aligned_cols=144 Identities=23% Similarity=0.268 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCC-CCeeEEEEeeccc-cccCcccccCChhHHHhhcccCceEecCCCchhhh
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRT-GLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
|.+++++.+++.+.+.++++++++++.+++ ..........+.. ...+..++...+.+..++.++++..+.+.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 457889999999999999999999999973 3333333222221 12233456666888999999998888765543311
Q ss_pred hhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008718 236 RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~-~~~~~~~~e~~ll~~la~~~~~al~~a~~~~ 314 (556)
.........+..+.+.+| +..++..+|++.+... .++.|+..+..++..++.+++.++++.++.+
T Consensus 81 ~~~~~~~~~~~~s~~~~P--------------l~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVP--------------LVADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEee--------------eeecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100011111256667777 4456677899988877 6889999999999999999999998887654
Q ss_pred H
Q 008718 315 D 315 (556)
Q Consensus 315 ~ 315 (556)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 3
No 75
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.58 E-value=4.7e-06 Score=83.61 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=129.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEE--EEeeccccccCcccccCChhHHHhhcccCc
Q 008718 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (556)
Q Consensus 146 l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (556)
+.++-+...+.+++.+-+..+++.+...+.++.|++|+.+.+...+++ +.+.++...+......+.+.++-+-.+.+|
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 556666778888999999999999999999999999999988866665 445555544455677788999999999999
Q ss_pred eEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHH
Q 008718 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (556)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~ 303 (556)
+.+.+.+..++|++....-...-++.+.+| +-..++.+||+++.++..|.+.+.|.+++.++|.++
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvP--------------Ii~~~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~l 150 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVP--------------IIRRGRLLGVLVVQQRELRQYDEDEVEFLVTLAMQL 150 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccc--------------eeecCceeEEEEEecccccccchHHHHHHHHHHHHH
Confidence 999999999999876555555556777777 555667899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008718 304 AVALSHAAIL 313 (556)
Q Consensus 304 ~~al~~a~~~ 313 (556)
+-.+..+++.
T Consensus 151 A~iva~~el~ 160 (756)
T COG3605 151 AEIVAQSQLT 160 (756)
T ss_pred HHHHHhhhhh
Confidence 9999888776
No 76
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.57 E-value=7.1e-08 Score=100.85 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhc
Q 008718 457 EKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFT 532 (556)
Q Consensus 457 ~~~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~ 532 (556)
...|.+++.||+.||++|+..+ .+.+.+...... ++.++|+|||+|||++.+.++|+
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iFe 94 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVFG 94 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhhc
Confidence 3446699999999999998753 343333222221 48999999999999999999999
Q ss_pred cCcccCCCC---CCCCCcceeeeccc
Q 008718 533 KFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 533 ~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
+|++++.-. ...++.|+||++++
T Consensus 95 rF~atSK~~~~~qS~G~rG~GLa~a~ 120 (659)
T PRK14867 95 KMLAGSKMHRLIQSRGQQGIGAAGVL 120 (659)
T ss_pred cccccCcccceeccCCCCcccHHHHH
Confidence 988754221 12346788887653
No 77
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.55 E-value=5e-07 Score=78.41 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcc--cccCC--hh-------HHHhhcccCceEe
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPINL--PI-------VTDVFNSAQAMRL 226 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-------~~~~~~~~~~~~~ 226 (556)
+.+++++.+++.+.+.++++.++|+++|+++.....++........... .+... .. -..++.+++++++
T Consensus 3 ~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
T PF13185_consen 3 DLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPIII 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEEE
Confidence 6788999999999999999999999998877545555544332221211 11111 11 1123889999999
Q ss_pred c-CCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHH
Q 008718 227 P-YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAV 305 (556)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~ 305 (556)
+ +..... ........+.++.+.+| +..++..+|++.+.+..+..|++.++++++.+|++++.
T Consensus 83 ~~~~~~~~---~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~ 145 (148)
T PF13185_consen 83 NDDDSSFP---PWELARHPGIRSILCVP--------------LRSGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIAI 145 (148)
T ss_dssp SCCCGGGS---TTHHHCCTT-SEEEEEE--------------EEETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHHH
T ss_pred eCcccccc---chhhhccccCCEEEEEE--------------EeECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 8 221111 12334446778888999 55666889999999988899999999999999999999
Q ss_pred HHH
Q 008718 306 ALS 308 (556)
Q Consensus 306 al~ 308 (556)
+|+
T Consensus 146 aie 148 (148)
T PF13185_consen 146 AIE 148 (148)
T ss_dssp HHH
T ss_pred HhC
Confidence 984
No 78
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.53 E-value=1.8e-07 Score=81.90 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|.||+++.....|
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~gfd~~~~~~~~ 98 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED--------------------RLEIIVSDQGDSFDMDTFKQSL 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC--------------------EEEEEEEEcccccCchhhcccc
Confidence 3445888999999999999853 344454444332 3999999999999999888888
Q ss_pred ccCcccCCCCCCCCCcceeeecccC
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+++...... ...+.|+||+++|+
T Consensus 99 ~~~~~~~~~~-~~~~~G~GL~Li~~ 122 (159)
T TIGR01924 99 GPYDGSEPID-DLREGGLGLFLIET 122 (159)
T ss_pred CCCCCCCCcc-cCCCCccCHHHHHH
Confidence 7766543332 22356999999874
No 79
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=98.46 E-value=1.8e-07 Score=75.13 Aligned_cols=76 Identities=34% Similarity=0.638 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhcCCC--CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCccc
Q 008718 460 LMQTILNIVGNAVKFTKE--GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 460 l~~il~nLl~NAik~~~~--g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
+.+++.+++.||++|+.. +.+.+..... +. .+.+.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-~~-------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-GD-------------------HLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec-CC-------------------EEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 367899999999999984 4444433332 22 3899999999999999999999876111
Q ss_pred CCCCCCCCCcceeeecccC
Q 008718 538 RGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 538 ~~~~~~~~G~GlGL~i~k~ 556 (556)
.......+.|+||++|++
T Consensus 61 -~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 61 -SRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred -CCCCCCCccccCHHHHHH
Confidence 111123478999988763
No 80
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.38 E-value=2.4e-06 Score=62.39 Aligned_cols=63 Identities=44% Similarity=0.682 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~ 406 (556)
++++.+.++||+||||+.|.++++.+.+...+++..+.++.+.+.++++..++++++++++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999988755555567889999999999999999999998854
No 81
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.17 E-value=0.0002 Score=68.64 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----ccccccceeHHHHHHHHHHHHHhhhhcC---CceEEEEeCCCC
Q 008718 377 EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS----LELDNGPFNLQIVLREVIKLIKPVASCK---KLSMTLIMAPEL 449 (556)
Q Consensus 377 ~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~----~~l~~~~~~l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~ 449 (556)
..+..|+....+--.+..++++=+.+....... ...-...+++.++++++.+..+..+... ..++.++.....
T Consensus 172 ~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 172 NIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 456677777777777777777766554411111 1112236899999999998887655422 223444333333
Q ss_pred CceeEccHHHHHHHHHHHHHHHhhcC-----CCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCC
Q 008718 450 PTYAVGDEKRLMQTILNIVGNAVKFT-----KEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (556)
Q Consensus 450 ~~~~~~d~~~l~~il~nLl~NAik~~-----~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~ 520 (556)
...+. -|..|.-++.+++.||++++ ..+. +.|.+...+++ +.|.|+|.|=
T Consensus 252 ~~~vy-vPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrGG 310 (414)
T KOG0787|consen 252 SFTVY-VPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRGG 310 (414)
T ss_pred cCccc-cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCCC
Confidence 32222 67899999999999999976 2232 34443333332 8899999999
Q ss_pred CCCCCChhhhhccCcccCCCCC-------CCCCcceeeeccc
Q 008718 521 GVPPQDIPLLFTKFAQSRGSSC-------QTPRAGLGLAICR 555 (556)
Q Consensus 521 Gi~~e~~~~iF~~f~~~~~~~~-------~~~G~GlGL~i~k 555 (556)
||+.+..+++|+-.|++.+... .-.|.|-||.|+|
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisr 352 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISR 352 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHH
Confidence 9999999999999888654422 1138899999986
No 82
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.13 E-value=8.9e-05 Score=74.02 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc--cccCcccccCChhHHHhhcc
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 220 (556)
...+.+++..+....+.+..+..+.+.+...++++.+++..+++++.......+.... ...........+.+..++..
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 4567888888888889999999999999999999999999999877333333333322 12223566678889999999
Q ss_pred cCceEecCCCchhhhhhc---ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (556)
+.++++...+..+.-.+. ......+.++.+.+| +..++..+|++.+....+..|+..-.+.+.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~lr 178 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEELR 178 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHHH
Confidence 999998222222211111 111122457888888 888999999999999888889888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 298 VVADQVAVALSHAAILEDSMRARNQLMEQNVALD 331 (556)
Q Consensus 298 ~la~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~ 331 (556)
.++..++.+..++.++++..+.++.+.+.+.+++
T Consensus 179 ~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~ 212 (550)
T COG3604 179 FLAALAALAVANALLHRELSSLKERLEEENLALE 212 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999988887777665544443
No 83
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=3.9e-06 Score=82.47 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCccc
Q 008718 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
..+.+++.||+.||+++.. ..+.+.+. .+. ...|.|.|||.||+++.++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~--~~~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIE--EGG-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEE--eCC-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4588999999999999765 44444432 222 2569999999999999999999999987
Q ss_pred CCC
Q 008718 538 RGS 540 (556)
Q Consensus 538 ~~~ 540 (556)
+..
T Consensus 79 k~~ 81 (312)
T TIGR00585 79 KIQ 81 (312)
T ss_pred CCC
Confidence 754
No 84
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.02 E-value=3.9e-05 Score=55.46 Aligned_cols=61 Identities=39% Similarity=0.535 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+.++.+.++||++||++.+.+.++.+.+... .+.....++.+.+.++++..++++++.+++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999998886533 566778889999999999999999998764
No 85
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.02 E-value=1.1e-05 Score=67.80 Aligned_cols=74 Identities=27% Similarity=0.330 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....+..++.+++.||++|+..+ .+.+......+ .+.++|.|+|.|+++.....-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~--------------------~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD--------------------RLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC--------------------EEEEEEEECCCCCChhhccCcc
Confidence 44678999999999999999753 33333333322 3999999999999987654321
Q ss_pred ccCcccCCCCCCCCCcceeeeccc
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
..-. ......|.||++++
T Consensus 88 ~~~~------~~~~~~G~Gl~li~ 105 (125)
T PF13581_consen 88 PWEP------DSLREGGRGLFLIR 105 (125)
T ss_pred cccC------CCCCCCCcCHHHHH
Confidence 1100 11235688888876
No 86
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.84 E-value=1.4e-05 Score=78.01 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....|.+++.+|++|+++++...+ +.+.+...+. +++.+.|.|||+|||++.+.++|
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~-------------------d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGK-------------------DHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCC-------------------ceEEEEEecCCCCCChhHhHHHH
Confidence 445699999999999999997533 3333333222 25999999999999999999999
Q ss_pred ccCcc
Q 008718 532 TKFAQ 536 (556)
Q Consensus 532 ~~f~~ 536 (556)
-+++-
T Consensus 94 Gk~Ly 98 (538)
T COG1389 94 GKMLY 98 (538)
T ss_pred HHHhc
Confidence 77643
No 87
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.84 E-value=0.00084 Score=73.92 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=100.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeec-cccccCccccc-CChhHHHhhcc--
Q 008718 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN-NQIQIGSSVPI-NLPIVTDVFNS-- 220 (556)
Q Consensus 145 ~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-- 220 (556)
.+..+...+....+.+++.+.+++.+.+..+.+.++|++++++...+......+ .....+....+ ..+....++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 456677788888899999999999999999999999999998777664432221 11111111111 22334555555
Q ss_pred cCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la 300 (556)
+....+.+........ .....+.+++| |..++.++|++.++...++.|+++++.++..+|
T Consensus 369 ~~~~~~~~~~~~~~~~------~~~~~s~~~vP--------------L~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG------TVDGSAVAAVP--------------LVYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc------ccCCceEEEEe--------------EEECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 5555554332211110 01112777888 778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008718 301 DQVAVALSHA 310 (556)
Q Consensus 301 ~~~~~al~~a 310 (556)
.+++.+|...
T Consensus 429 ~~ia~aI~~~ 438 (665)
T PRK13558 429 RAVGAAINAL 438 (665)
T ss_pred HHHHHHHHHH
Confidence 9999999544
No 88
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=97.83 E-value=0.0003 Score=62.36 Aligned_cols=126 Identities=12% Similarity=0.026 Sum_probs=96.6
Q ss_pred cCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhh
Q 008718 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 156 ~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
..++.+.++++++.+.+.+++ +++| +++.-.++|.......+..+ + .+..+.+++.+++.....+.... .+
T Consensus 51 ~~~~~~~A~~~aeII~~~t~~-aVaI-----TDr~~ILA~~G~g~d~~~~~-~-is~~t~~~i~~gk~~~~~~~~~~-~i 121 (180)
T TIGR02851 51 IGELGDFAKEYAESLYQSLGH-IVLI-----TDRDTVIAVAGVSKKEYLNK-P-ISDELEDTMEERKTVILSDTKDG-PI 121 (180)
T ss_pred ccchHHHHHHHHHHHHHHhCC-EEEE-----ECCCcEEEEECCChhhcCCC-c-cCHHHHHHHHcCCEEEecCCccc-ee
Confidence 346778899999999999999 9999 88888888775544333333 5 77788999999999888754310 01
Q ss_pred hhccc-CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC--ccccchHHHHHHHHHHHHHHH
Q 008718 236 RLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR--KWRDHELELIDVVADQVAVAL 307 (556)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~--~~~~~e~~ll~~la~~~~~al 307 (556)
. +. ...++..+.+.+| +..++.++|.+.++ ...+ .+++.+.+++.++|..++.++
T Consensus 122 ~--c~~~~~~~l~s~ii~P--------------l~~~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QL 179 (180)
T TIGR02851 122 E--IIDGQEFEYTSQVIAP--------------IIAEGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM 179 (180)
T ss_pred c--cccCCCCCcceEEEEE--------------EEECCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 33 4556788999999 55666789999988 6655 899999999999999998876
No 89
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.82 E-value=2.2e-05 Score=69.38 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCC--eeEEEEe-ec---cccccCccc-ccCChhHH
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSYT-LN---NQIQIGSSV-PINLPIVT 215 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~~~-~~---~~~~~~~~~-~~~~~~~~ 215 (556)
...+.+++..+....+.+++++.+++.+.+.++.+++.++..+.+.. ...+... .. ......... +.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T COG2203 3 EALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIG 82 (175)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhh
Confidence 34567788889999999999999999999999999999999887753 1111110 00 000000011 11222345
Q ss_pred HhhcccCceEecCCCchhhhhhcccCCCCC-cceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC-ccccchH
Q 008718 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPP-DIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 293 (556)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~-~~~~~e~ 293 (556)
.+...+.+..+.+......+.........+ -.+.+.+| +..++..+|++.+....+. .|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vP--------------l~~~~~~~G~l~~~~~~~~~~~~~~e~ 148 (175)
T COG2203 83 IALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVP--------------LIAQGELLGLLCVHDSEPRRQWSEEEL 148 (175)
T ss_pred hhhcCCceEEeeccccCcccccCHHHHHHHHHHHheeee--------------eeECCEeeEEeeeeccCCCCCCCHHHH
Confidence 566777777777766655443211111111 35666777 4555567888888877755 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008718 294 ELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 294 ~ll~~la~~~~~al~~a~~~~~ 315 (556)
.++..+|.++++++++++.+++
T Consensus 149 ~ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 149 ELLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887765
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.71 E-value=0.0001 Score=63.14 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKE-----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~-----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~i 530 (556)
+...+.-++.+++.||++|+.+ |.+.+.....++. +.+.|.|.|+|++ ..++-
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~--------------------~~i~i~D~G~~~~--~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK--------------------LEIRIWDQGPGIE--DLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe--------------------EEEEEEeCCCCCC--CHHHh
Confidence 6678999999999999999855 5555555555443 9999999996654 45566
Q ss_pred hccCcccCCCCCCCCCcceeeecccC
Q 008718 531 FTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 531 F~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.|.+.+.+.. ..-|+||++.++
T Consensus 95 ~~~~~~~~~~~---~~~G~Gl~l~~~ 117 (146)
T COG2172 95 LGPGDTTAEGL---QEGGLGLFLAKR 117 (146)
T ss_pred cCCCCCCCccc---ccccccHHHHhh
Confidence 77765443322 223777776653
No 91
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.35 E-value=0.00028 Score=75.74 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCccc
Q 008718 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
..+..++.+|+.||++++ +..+.+.+. .++ ...|+|+|||.||+++.++.+|.++.+.
T Consensus 21 ~~~~svvkElveNsiDAg-at~I~v~i~--~~g-------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 21 ERPASVVKELVENALDAG-ATRIDIEIE--EGG-------------------LKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred cCHHHHHHHHHHHHHhCC-CCEEEEEEE--eCC-------------------eEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 347789999999999966 455555552 222 2689999999999999999999998876
Q ss_pred CCC
Q 008718 538 RGS 540 (556)
Q Consensus 538 ~~~ 540 (556)
+-.
T Consensus 79 Ki~ 81 (617)
T PRK00095 79 KIA 81 (617)
T ss_pred CCC
Confidence 543
No 92
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.26 E-value=3.7e-05 Score=65.59 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCC
Q 008718 461 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 461 ~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
..++.+||.||+++.. ..+.+.+...+... -.|.|.|||.||+++.+.+.|....+.+.
T Consensus 4 ~~al~ElI~Ns~DA~a-~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~ 62 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA-TNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKK 62 (137)
T ss_dssp THHHHHHHHHHHHHHH-HHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHH
T ss_pred HHHHHHHHHHHHHccC-CEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCC
Confidence 4688999999999664 34666665553222 47999999999999999998876665543
No 93
>PF14501 HATPase_c_5: GHKL domain
Probab=96.94 E-value=0.0025 Score=51.05 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC--eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEG--YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+...+..++.||++||++++..- ...+.+.....++ .+.|.|++.-.+ +. ++++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~------------------~~~i~i~N~~~~---~~-~~~~-- 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG------------------FLVIIIENSCEK---EI-EKLE-- 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC------------------EEEEEEEECCCC---cc-cccc--
Confidence 45678899999999999987431 2223332222221 489999887444 21 2222
Q ss_pred CcccCCCCCCCCCcceeeecccC
Q 008718 534 FAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+. .....+.|+||.++++
T Consensus 58 --~~---~~~~~~~G~GL~~v~~ 75 (100)
T PF14501_consen 58 --SS---SSKKKGHGIGLKNVKK 75 (100)
T ss_pred --cc---ccCCCCCCcCHHHHHH
Confidence 11 1223588999998874
No 94
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=96.85 E-value=0.053 Score=46.01 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhhC-CceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhhcc
Q 008718 161 TILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLV 239 (556)
Q Consensus 161 ~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
.-+..+...+.+.+. .+-+.+|+.+ +..+.+.-.. ..+....+|+..++++.+..+++.+++.+....+- .
T Consensus 35 anlan~sall~~~l~~~nW~GFYl~~--~~~LvLgPFq--G~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g----h 106 (163)
T COG1956 35 ANLANASALLKERLPDVNWVGFYLLE--GDELVLGPFQ--GKVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG----H 106 (163)
T ss_pred HHHHHHHHHHHhhccCCceEEEEEec--CCeEEEeccc--CCcceEEeccCcchhHHHHhcCCeEEecccccCCC----c
Confidence 335555566666554 8889999998 3344432211 12455678999999999999999999998765432 1
Q ss_pred cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHH
Q 008718 240 GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVA 306 (556)
Q Consensus 240 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~a 306 (556)
.......++.+.+| +..++..+|++-+.+.....|++++...++.++..+.-.
T Consensus 107 iaCD~as~SEIVvP--------------i~~~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 107 IACDAASNSEIVVP--------------IFKDGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred cccccccCceEEEE--------------EEECCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 11223456778899 556778899999999999999999999999999887643
No 95
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0011 Score=71.14 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
+..-|+.+|++||++++. ..+. +...+++ .-.|.|+|||+||+++++.-.+.++.|.|
T Consensus 23 rPaSVVKELVENSlDAGA-t~I~--I~ve~gG-------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA-TRID--IEVEGGG-------------------LKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC-CEEE--EEEccCC-------------------ccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 467899999999999665 3333 3333333 13599999999999999999999998776
Q ss_pred CC
Q 008718 539 GS 540 (556)
Q Consensus 539 ~~ 540 (556)
-.
T Consensus 81 I~ 82 (638)
T COG0323 81 IA 82 (638)
T ss_pred CC
Confidence 44
No 96
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=96.59 E-value=0.13 Score=45.84 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=88.7
Q ss_pred HhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEec-------cCC-CCeeEEEEeeccccccCcc
Q 008718 135 LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMP-------SRT-GLNLELSYTLNNQIQIGSS 206 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~-------~~~-~~~~~~~~~~~~~~~~~~~ 206 (556)
.+.+..+=++.+-+.+..|-+..++++.+..++.++..+++.+..+++.. +.+ +...+++....-....+.+
T Consensus 13 ~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~~~~~ 92 (174)
T PF11849_consen 13 TIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESLIGQP 92 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhhcCCc
Confidence 34444455677788888888899999999999999999999998887761 111 1122222222111111111
Q ss_pred c-ccCC----hhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec
Q 008718 207 V-PINL----PIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (556)
Q Consensus 207 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~ 281 (556)
. .... ..+.+++.+++...-+ ....+. ++.....-+++++.
T Consensus 93 ~~~~~~~~i~~~~~~a~~~~~~~~~~------------------~~~~ly----------------~~~~~g~~~~iyl~ 138 (174)
T PF11849_consen 93 LDDLLPPEIRAALQQALSSKRSIFEE------------------DHFVLY----------------FPSSSGRESLIYLE 138 (174)
T ss_pred ccccCCHHHHHHHHHHHHcCCeEecC------------------CeEEEE----------------EecCCCCEEEEEEe
Confidence 1 1112 2234444443333211 111111 22222334466665
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 282 ~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~ 317 (556)
.. +++++.+.++++.++..++++++|..+++++.
T Consensus 139 ~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 139 GD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 48999999999999999999999999987754
No 97
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.54 E-value=0.0018 Score=69.53 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe-EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhh-----
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~----- 529 (556)
+...+..++.++|.||++...+|. ..|.+....++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg---------------------~I~V~DnGrGIP~~~~~~~~~~~ 92 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG---------------------SVSVRDNGRGIPVGIHPEEGKSG 92 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC---------------------cEEEEEcCCCCCcccccccCCcc
Confidence 456789999999999999754442 22322222221 589999999999998887
Q ss_pred ---hhccCcccCCCC----CCCCC-cceeeecc
Q 008718 530 ---LFTKFAQSRGSS----CQTPR-AGLGLAIC 554 (556)
Q Consensus 530 ---iF~~f~~~~~~~----~~~~G-~GlGL~i~ 554 (556)
+|.....+..-. ....| .|.|++.|
T Consensus 93 ~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~v 125 (631)
T PRK05559 93 VEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVV 125 (631)
T ss_pred hheeeeeccccCccCCccccccCcccccchhhh
Confidence 776643221110 01123 58888765
No 98
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=96.31 E-value=0.06 Score=40.35 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHH
Q 008718 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (556)
++|.+||.|..|.+++.+-.....+++.++.+..+...+..+..+-+.+.. .-....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~---------~~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQ---------SEDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCeecHHHHHHHHHHHH
Confidence 689999999999999999988888888888888888877777776666532 11334799999999999877
Q ss_pred Hh
Q 008718 431 KP 432 (556)
Q Consensus 431 ~~ 432 (556)
..
T Consensus 73 ~~ 74 (76)
T PF07568_consen 73 RQ 74 (76)
T ss_pred HH
Confidence 53
No 99
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.04 E-value=0.0085 Score=64.43 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
++.-|..++.++|.||++...+| .+.|.+ ..++ .|+|.|||+|||.+...
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i--~~~g---------------------~I~V~DnG~GIp~~~h~ 86 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTI--NEDG---------------------SITVTDNGRGIPVDIHP 86 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEE--eCCC---------------------cEEEEEeCccccCCccC
Confidence 45668999999999999944444 333333 2221 59999999999987543
No 100
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=95.98 E-value=0.073 Score=49.60 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHh----hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeec
Q 008718 123 KNRADELDREMGLI----LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (556)
Q Consensus 123 ~~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (556)
++..++++.+.+.+ +..++....+.++...+-+..+.+++++.+...+.+.++++.|.+++.+......... .
T Consensus 53 R~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~---~ 129 (225)
T PF04340_consen 53 RERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSL---T 129 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccch---h
Confidence 33444444444443 3334445567778888889999999999999999999999999999988654321100 0
Q ss_pred cccccCcccccCChhHHHh----hcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccce
Q 008718 199 NQIQIGSSVPINLPIVTDV----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (556)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (556)
. ...........+ +..+++..-+........-| . ....+..+...+| |. .+..
T Consensus 130 ~------~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~~lF-~-~~~~~v~S~Alip--------------L~-~~~~ 186 (225)
T PF04340_consen 130 D------HVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEAALLF-G-DEAAQVGSVALIP--------------LG-SGRP 186 (225)
T ss_dssp ----------E-HHHHHHHHCCCHTT---CCCS--HHHHHHHH-H-HCHCC-SEEEEEE--------------EE-SSSE
T ss_pred h------cccccHHHHHHHHHHHhCCCCceeCCCCcchhHHhc-C-CCCccccchheee--------------cc-CCCc
Confidence 0 000000111111 11112211111111110000 1 0123344555556 44 4556
Q ss_pred EEEEEeccCCCCccc-cchHHHHHHHHHHHHHHHHH
Q 008718 275 VMVLMLPTDGGRKWR-DHELELIDVVADQVAVALSH 309 (556)
Q Consensus 275 ~gvl~~~~~~~~~~~-~~e~~ll~~la~~~~~al~~ 309 (556)
+|++.+.+..+..|+ .....+++.+|..++.++.+
T Consensus 187 ~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~r 222 (225)
T PF04340_consen 187 IGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALER 222 (225)
T ss_dssp EEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGGG
T ss_pred eEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHhc
Confidence 889988887655555 56888999999999988753
No 101
>PRK14083 HSP90 family protein; Provisional
Probab=95.62 E-value=0.01 Score=62.98 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCC---------CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 462 QTILNIVGNAVKFTKE---------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 462 ~il~nLl~NAik~~~~---------g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
..+.||++||.++... +.+.+... ..+. -.++|+|||+||+.+.+.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~--------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG--------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC--------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4578999999888532 23333332 2211 578999999999999988765
No 102
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=95.54 E-value=0.0078 Score=64.49 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhh---cCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC--------hh
Q 008718 460 LMQTILNIVGNAVK---FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------IP 528 (556)
Q Consensus 460 l~~il~nLl~NAik---~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~--------~~ 528 (556)
+..++.++|.||++ ++....+.+.+. .+. .|+|.|||.|||.+. .+
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~d~---------------------~I~V~DnGrGIp~~~h~~~g~~~~e 87 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILH--QDQ---------------------SIEVFDNGRGMPVDIHPKEGVSAVE 87 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEe--CCC---------------------eEEEEecCCccCcccccccCCcHHH
Confidence 47788899999998 444444444432 222 599999999999988 66
Q ss_pred hhh
Q 008718 529 LLF 531 (556)
Q Consensus 529 ~iF 531 (556)
-+|
T Consensus 88 ~v~ 90 (625)
T TIGR01055 88 VIL 90 (625)
T ss_pred Hhh
Confidence 666
No 103
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=95.36 E-value=0.017 Score=62.64 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++.-+..++.++|.||++...+| ...|.+....++ .|+|.|||+|||.+..
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h 78 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG---------------------SVTVEDNGRGIPVDIH 78 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC---------------------cEEEEEeCCCcCcccc
Confidence 44668999999999999944334 222222222222 3999999999998743
No 104
>PRK05218 heat shock protein 90; Provisional
Probab=95.25 E-value=0.015 Score=62.35 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCChhhhhc
Q 008718 512 RVQVNDSGCGVPPQDIPLLFT 532 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~ 532 (556)
.|.|+|||+||+.+.+..-|.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~ 94 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLG 94 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 499999999999999887664
No 105
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.86 E-value=0.04 Score=59.43 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.6
Q ss_pred EEEEEEEcCCCCCCCChhhh
Q 008718 511 LRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~~i 530 (556)
..++|.|||+||+++.+.+-
T Consensus 72 ~~L~I~DnGiGMt~edl~~~ 91 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNN 91 (701)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 57899999999998886543
No 106
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.035 Score=57.98 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=15.5
Q ss_pred EEEEEEEcCCCCCCCChhh
Q 008718 511 LRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~~ 529 (556)
=.++|+|||+||+.+++..
T Consensus 74 kTLtI~DNGIGMT~~Ev~~ 92 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIE 92 (623)
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 3799999999999877543
No 107
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=94.45 E-value=0.012 Score=62.85 Aligned_cols=48 Identities=31% Similarity=0.490 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcCCCCe-EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChh
Q 008718 460 LMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 460 l~~il~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
|.+++.+++.||++....|. ..|.+....++ .|+|.|||.|||.+..+
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~ 50 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN---------------------SISVEDNGRGIPVEIHP 50 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC---------------------eEEEEEeCCceeCCccC
Confidence 34577899999999874442 22222222221 59999999999976543
No 108
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=94.08 E-value=0.049 Score=58.52 Aligned_cols=50 Identities=32% Similarity=0.490 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
++.-|..++.++|.||++-..+|.. .|.+....+ =.|+|.|||.|||.+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d---------------------gsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD---------------------NSITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcCC---------------------CeEEEEECCCcccCcc
Confidence 4556888888999998885543322 222222222 2589999999999754
No 109
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=93.69 E-value=0.069 Score=58.14 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 458 KRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.-|..++.+++.||++-.-+| ...|.+....++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg---------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG---------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCCC---------------------eEEEEEcCCcccCCc
Confidence 458999999999999944444 222222222221 599999999999874
No 110
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=93.68 E-value=0.051 Score=57.94 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.8
Q ss_pred EEEEEEcCCCCCCCCh
Q 008718 512 RVQVNDSGCGVPPQDI 527 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~ 527 (556)
.|+|.|||.|||-+..
T Consensus 80 sisV~dnGrGIPv~~h 95 (602)
T PHA02569 80 QVTVSDNGRGIPQAMV 95 (602)
T ss_pred EEEEEECCCcccCCcc
Confidence 5999999999998654
No 111
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.18 Score=41.72 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCC
Q 008718 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKP 489 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~ 489 (556)
..+.-+..+|++||+||...|.+++.......
T Consensus 62 hsvgYl~NELiENAVKfra~geIvieasl~s~ 93 (184)
T COG5381 62 HSVGYLANELIENAVKFRATGEIVIEASLYSH 93 (184)
T ss_pred hhHHHHHHHHHHhhhcccCCCcEEEEEEeccc
Confidence 44667889999999999998877766655443
No 112
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=93.33 E-value=0.6 Score=35.56 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHH
Q 008718 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
++++-+ +|++.|.|++|.+.+.. ..+...+++..+.++.|..- ......+.+.
T Consensus 5 L~~QIn-----PHFl~NtLn~I~~l~~~-------------------~~~~~~~~i~~ls~~lRy~l---~~~~~~v~l~ 57 (82)
T PF06580_consen 5 LQAQIN-----PHFLFNTLNSISWLARI-------------------DPEKASEMILSLSDLLRYSL---SSKEEFVTLE 57 (82)
T ss_pred HHhhcC-----hHHHHHHHHHHHHHHHc-------------------CHHHHHHHHHHHHHHHHHHh---CCCCCeeeHH
Confidence 344556 99999999999987442 13333444444444444221 2234478999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEE
Q 008718 421 IVLREVIKLIKPVASCKKLSMTL 443 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~ 443 (556)
+-++.+..++....-+.+-.+++
T Consensus 58 ~El~~i~~Yl~i~~~R~~~~l~~ 80 (82)
T PF06580_consen 58 EELEFIENYLEIQKIRFGDRLEY 80 (82)
T ss_pred HHHHHHHHHHHHHHHHCCCceEe
Confidence 99999888887665444444443
No 113
>PLN03128 DNA topoisomerase 2; Provisional
Probab=93.09 E-value=0.14 Score=58.42 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 458 KRLMQTILNIVGNAVKFT-KEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~-~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..+|.++|.||++.. .+|.. .+.+....++ =.|+|.|||.|||-+..
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~d--------------------gsIsV~DnGrGIPv~ih 102 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQ--------------------NTISVYNNGKGIPVEIH 102 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCC--------------------CeEEEEecCccccCCCC
Confidence 347788888888888865 22322 2222222211 25999999999997643
No 114
>PLN03237 DNA topoisomerase 2; Provisional
Probab=92.02 E-value=0.19 Score=58.02 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhcC-CCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 459 RLMQTILNIVGNAVKFT-KEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~-~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..+|.++|.||++.. .+|.. .+.+.....+ =.|+|.|||.|||-+..
T Consensus 77 GL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~--------------------gsIsV~DnGRGIPV~iH 127 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ--------------------NLISVYNNGDGVPVEIH 127 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC--------------------CEEEEEecCccccCCCC
Confidence 46777788888877765 22221 1222222121 25999999999997654
No 115
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=92.01 E-value=0.22 Score=57.60 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhcCC----CCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 459 RLMQTILNIVGNAVKFTK----EGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~----~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..+|.++|.||++... +|.. .|.+....+. =.|+|.|||.|||-+..
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~--------------------g~IsV~dnGrGIPv~~h 110 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN--------------------GEISVYNDGEGIPVQIH 110 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC--------------------CeEEEEecCCcccCCCC
Confidence 477788888888877643 2332 2222222221 15999999999997654
No 116
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=91.90 E-value=0.049 Score=56.59 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCe---EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 458 KRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..++.+.+.||++-+-+|. +.|.+. .++ .|+|.|||.|||-+..
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~--~d~---------------------sisV~DnGRGIPvdiH 84 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLH--EDG---------------------SISVEDNGRGIPVDIH 84 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEc--CCC---------------------eEEEEECCCCCccccC
Confidence 4466666777777776543333 333322 222 5999999999997773
No 117
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=91.43 E-value=0.051 Score=59.34 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 457 EKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 457 ~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..-|.+++.++|.||++-.-.|....+......+ =.|+|+|||.|||-+..
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~D--------------------gsItV~DnGRGIPvd~h 177 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLHKD--------------------GSVEISDNGRGIPCDVS 177 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEcCC--------------------CeEEEEeCCcccccccc
Confidence 3446777778888888755444322222221212 14899999999997553
No 118
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=91.39 E-value=0.22 Score=52.16 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 460 l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
+.-++.+|++|+++++. ..+.+ ...+.+- =.|+|+|||+||++...+-+=.++++.+
T Consensus 21 l~sAVKELvENSiDAGA-T~I~I--~~kdyG~-------------------d~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGA-TAIDI--KVKDYGS-------------------DSIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred HHHHHHHHHhcCcccCC-ceeeE--ecCCCCc-------------------ceEEEecCCCCCCccchhhhhhhhhhhc
Confidence 55889999999999654 22333 3332221 3699999999999988776655555443
No 119
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=91.03 E-value=1.4 Score=31.42 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTT 394 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~ 394 (556)
.++..-||+.|.|.+|.|++++- ..++..++++.+.......+.
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHH
Confidence 33445899999999999998753 234455666666555555443
No 120
>PTZ00130 heat shock protein 90; Provisional
Probab=90.93 E-value=0.16 Score=55.36 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCCCCChhh
Q 008718 512 RVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~ 529 (556)
.++|+|||+||+.+.+.+
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 689999999999988643
No 121
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=90.58 E-value=0.33 Score=49.83 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
+...++.++++|++++.. ..|.+...+++ -=.+.|+|||.||-.++++-+=++|-+.|
T Consensus 27 RP~NAlKEliENSLDA~S---T~I~V~vk~GG-------------------LKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 27 RPVNALKELIENSLDANS---TSIDVLVKDGG-------------------LKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chHHHHHHHHhccccCCC---ceEEEEEecCC-------------------eEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 345678899999998543 33444444443 13567889999999999999989887655
Q ss_pred C
Q 008718 539 G 539 (556)
Q Consensus 539 ~ 539 (556)
-
T Consensus 85 L 85 (694)
T KOG1979|consen 85 L 85 (694)
T ss_pred c
Confidence 3
No 122
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=89.15 E-value=7 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008718 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~ 311 (556)
+..++..+|.+++...+ ..|+.+|+-+.+..|..+++.+.+..
T Consensus 115 I~g~GeRLGTLvl~r~~-~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 115 IYGGGERLGTLVLARFD-KEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp EEETTEEEEEEEEEESS-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCeEEEEEEEEEcC-CCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 44555668888877653 48999999999999999998885443
No 123
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.50 E-value=15 Score=31.54 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
+.+-+.||+-.|...|.+-+++|.+...+++. ++-|+.++...+. .+.|.|+.-|-..-.-..+|-.+.=
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addDA---m~LIrsSArnas~----rLqFaR~AFGAsgSag~~iDtgeae--- 87 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDDA---MDLIRSSARNASV----RLQFARLAFGASGSAGASIDTGEAE--- 87 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHHH---HHHHHHHhhhHHH----HHHHHHHHhcccccccccccchhHH---
Confidence 56668999999999999999999887666544 4446666555543 3566666443322111234433322
Q ss_pred HHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEee
Q 008718 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASV 486 (556)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~ 486 (556)
+..+..+...+.+++.+.+.. .+ +..+. ..+.|++.=|--+.|.|+..+....
T Consensus 88 -k~A~~~~a~ekpe~~W~g~r~---~~--~Kn~v-kllLNl~lia~~aiPrGG~~~vtle 140 (214)
T COG5385 88 -KAAQDFFANEKPELTWNGPRA---IL--PKNRV-KLLLNLFLIAYGAIPRGGSLVVTLE 140 (214)
T ss_pred -HHHHHHHhccCCcccccCChh---hc--CcchH-HHHHHHHHHHcccCCCCCeeEEEee
Confidence 222222333334444432221 12 23322 4567777777767787765554443
No 124
>PRK10963 hypothetical protein; Provisional
Probab=87.62 E-value=24 Score=32.77 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHh----hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeec
Q 008718 123 KNRADELDREMGLI----LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (556)
Q Consensus 123 ~~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (556)
++...+++.+...+ +..++....+.++...+-+..+.+++++... .+.+.++++.++++++++.+..-.
T Consensus 50 R~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~~~~------ 122 (223)
T PRK10963 50 RNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWRLGA------ 122 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecccccccC------
Confidence 34444444444443 3333334556677788888899999888886 679999999999988764321100
Q ss_pred cccccCcccccCChhHHHh----hcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccce
Q 008718 199 NQIQIGSSVPINLPIVTDV----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (556)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (556)
..... ...........+ +...++..-........+-+ . . ..+..+.-.+| |..++.
T Consensus 123 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~G~~~~~e~~~lf-~-~-~~~v~S~Allp--------------L~~~~~- 182 (223)
T PRK10963 123 -PSDFT-HLALSRQAFEPLRIQRLGQRQHYLGPLNGPELLLLL-P-E-AKAVGSVAMSL--------------LGSDGD- 182 (223)
T ss_pred -ccchh-hhhccHHHHHHHHHHHhcCCCceeCCCChHHHHHhC-C-C-CCcCceeEEEe--------------ccCCCc-
Confidence 00000 000001111111 22222222221111111111 1 1 11234444556 433322
Q ss_pred EEEEEeccCCCCccc-cchHHHHHHHHHHHHHHHH
Q 008718 275 VMVLMLPTDGGRKWR-DHELELIDVVADQVAVALS 308 (556)
Q Consensus 275 ~gvl~~~~~~~~~~~-~~e~~ll~~la~~~~~al~ 308 (556)
+|++.+.+..+..|+ .....++..+|..++..+.
T Consensus 183 ~GlLalGS~D~~rF~~~mgT~fL~~la~vvs~~L~ 217 (223)
T PRK10963 183 LGVLLFSSRDAQHYQQGQGTQLLQHLALMLPELLE 217 (223)
T ss_pred eEEEEEeCCChhhcCCCccHHHHHHHHHHHHHHHH
Confidence 889988887755555 5688899999999987774
No 125
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=87.09 E-value=0.84 Score=48.05 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCccc
Q 008718 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
..|.+++.+|+-|++++.. ..+.+.+.. . ...+.|.|||.|+..+++..+-+++|+.
T Consensus 20 ~sla~~VeElv~NSiDA~A-t~V~v~V~~---~-------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA-TCVAVRVNM---E-------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccCc-eEEEEEecC---c-------------------eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 4588999999999998654 333333322 1 1789999999999999999999999875
Q ss_pred C
Q 008718 538 R 538 (556)
Q Consensus 538 ~ 538 (556)
+
T Consensus 77 K 77 (1142)
T KOG1977|consen 77 K 77 (1142)
T ss_pred h
Confidence 4
No 126
>PRK04158 transcriptional repressor CodY; Validated
Probab=83.35 E-value=40 Score=31.61 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008718 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~ 311 (556)
+..++...|.+++.... .+|+++|+.+++..|..++..+.+..
T Consensus 117 I~ggGeRLGTLvl~r~~-~~f~~dDliL~EyaATVVgLEIlR~~ 159 (256)
T PRK04158 117 IIGGGERLGTLILARFD-KEFTDDDLILAEYAATVVGMEILREK 159 (256)
T ss_pred EecCCeEEEEEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888877543 48999999999999999998885443
No 127
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=81.30 E-value=17 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD--LTPEQRVMIETVLKSSNL 391 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~ 391 (556)
+.+++..+++.+.+.|+++...++.+.... .+++..+.++.+.+.+..
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~ 51 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLRE 51 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999998888642 233445555555544333
No 128
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=79.69 E-value=8 Score=29.43 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHH
Q 008718 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (556)
+.|.+||-++.+.+.+..-.+...+.+ ++.+.+..-..-|...-+-+ ..-....++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~--~~~~~~~~Rl~ALa~a~~ll----------~~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVE--EFAEAFSGRLQALARAHDLL----------SRSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHH--HHHHHHHHHHHHHHHHHHHH----------hcCCCCCccHHHHHHHHHHhc
Confidence 589999999999999888776543332 22222222222222211111 122345899999999998877
Q ss_pred Hh
Q 008718 431 KP 432 (556)
Q Consensus 431 ~~ 432 (556)
..
T Consensus 70 ~~ 71 (83)
T PF07536_consen 70 GS 71 (83)
T ss_pred cC
Confidence 54
No 129
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=76.48 E-value=59 Score=29.42 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.1
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHH
Q 008718 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a 310 (556)
+..++...|.+++.... ..|+++++-+++..+..+++.+.+.
T Consensus 120 I~G~g~RLGTLil~R~d-~~F~ddDLiL~E~~aTvvG~qil~~ 161 (261)
T COG4465 120 IYGGGERLGTLILWRLD-DKFTDDDLILVEYAATVVGMQILRE 161 (261)
T ss_pred EecCCeeeeeEEEEecC-CCCCccceehhhhhhHHHHHHHHHH
Confidence 55566667877776532 3899999999999999999888544
No 130
>COG5393 Predicted membrane protein [Function unknown]
Probab=75.11 E-value=42 Score=27.01 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=20.6
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 71 ISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (556)
Q Consensus 71 l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~~a~~l~~ 107 (556)
+.+|.|| |-|.....+-.++++..++.+.++|.
T Consensus 71 Lvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~ 103 (131)
T COG5393 71 LVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWT 103 (131)
T ss_pred HHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677 34444455556666677777777887
No 131
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=74.40 E-value=6.6 Score=42.65 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 457 EKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 457 ~~~l~~il~nLl~NAik-~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..-|.+|+.+.+.||.. -..++--++......+. -.++|.|||.|||-+..
T Consensus 51 ~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 51 VPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred CCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 33489999999999998 22333333333333332 37999999999996543
No 132
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=74.23 E-value=65 Score=28.78 Aligned_cols=128 Identities=14% Similarity=0.051 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHHHHHHHhhhhcCCc
Q 008718 360 HAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKL 439 (556)
Q Consensus 360 ~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i 439 (556)
.+|.+.+++|.+...+++ +..++-|.+++.....-++ |.|+--|.-.- .+.++..+.-+-+-.++. ..++
T Consensus 2 GAI~NGLELL~~~~~~~~-~~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~~~~~~~~~----~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDPEM-RPAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEARSVLRGYFA----GGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCccc-hHHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHHHHHHHHHh----CCce
Confidence 357778888877654333 2377778888777765544 44443333221 346676665444444433 3444
Q ss_pred eEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcC
Q 008718 440 SMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (556)
Q Consensus 440 ~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG 519 (556)
++.... ..+.. ++. .-+++.|++-=+..+.+.|+.+.+......+. ..+.|.=+|
T Consensus 72 ~l~W~~--~~~~~---~k~-~vklllnl~l~a~~alprGG~i~V~~~~~~~~-------------------~~~~v~a~G 126 (182)
T PF10090_consen 72 TLDWQV--ERDLL---PKP-EVKLLLNLLLCAEDALPRGGEITVSIEGSEGD-------------------GGWRVRAEG 126 (182)
T ss_pred EEEccC--ccccC---CHH-HHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC-------------------ceEEEEEec
Confidence 444433 32211 333 33888899888888888766554443333322 567777777
Q ss_pred CCC
Q 008718 520 CGV 522 (556)
Q Consensus 520 ~Gi 522 (556)
..+
T Consensus 127 ~~~ 129 (182)
T PF10090_consen 127 PRA 129 (182)
T ss_pred ccc
Confidence 654
No 133
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=74.02 E-value=42 Score=27.35 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=3.9
Q ss_pred HHHHHhcC
Q 008718 40 IYFVQKSA 47 (556)
Q Consensus 40 ~~~~~~~~ 47 (556)
.+.++|++
T Consensus 20 i~~vr~~~ 27 (115)
T PF10066_consen 20 IRLVRKRK 27 (115)
T ss_pred HHHHHHhh
Confidence 34455554
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=67.04 E-value=1.8 Score=40.31 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=0.0
Q ss_pred hhHHHHH-hhhHH----H---HHHHHhHHHHHHHHHHhcCC
Q 008718 16 LLVRYQY-ISDIL----I---ALAYFSIPVELIYFVQKSAF 48 (556)
Q Consensus 16 ~~~~~~~-~s~~~----i---a~a~~~ip~~~~~~~~~~~~ 48 (556)
+|+|+.+ .||.. + ..|.+.|-++++.++.|||.
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677766 45542 2 23334455555666667763
No 135
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=66.88 E-value=79 Score=28.47 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=50.5
Q ss_pred CChhHHHhhcccCceEecCCCch-hhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcc
Q 008718 210 NLPIVTDVFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~ 288 (556)
..+.+..++++++...+.+..-. .+.+|. .......+.++.|+ ..+ |++.+..+.+|.|
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~--~lP~ntq~VlvqP~--------------g~~----G~lvlgs~~~R~f 179 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD--YLPENTQSVLVQPL--------------GQN----GVLVLGSNSPRAF 179 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh--hcCCCCcEEEEEEc--------------CCC----eEEEEeeCCcccc
Confidence 44678999999998887765322 222222 12233455666673 222 7888888899999
Q ss_pred ccchHHHHHHHHHHH
Q 008718 289 RDHELELIDVVADQV 303 (556)
Q Consensus 289 ~~~e~~ll~~la~~~ 303 (556)
|+.|..++..+|+.+
T Consensus 180 t~~D~~Wi~~iA~Kl 194 (195)
T PF11152_consen 180 TKSDEAWIAGIADKL 194 (195)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
No 136
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=64.80 E-value=1.2e+02 Score=28.23 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008718 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~ 311 (556)
+..++..+|.+++...+ ..|+.+|+-+.+..|..+++-+.+..
T Consensus 114 I~g~g~RLGTl~l~r~~-~~F~~dDliLaEy~aTVVG~Eilr~~ 156 (251)
T TIGR02787 114 IYGGGERLGTLILARSD-KEFNDDDLVLAEYAATVVGMELLRAQ 156 (251)
T ss_pred eecCCceeEEEEEEEcC-CCCCcccchhhhhHhHHHHHHHHHHH
Confidence 44444457777777644 48999999999999999988875443
No 137
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=62.68 E-value=9 Score=27.35 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCCcceeeeeccccccCcccc--------CCCCCCcccceEEEEEeccCC
Q 008718 242 YVPPDIVAVRVPLLHLSNFQIN--------DWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 242 ~~~~~~~~~~~pl~~~~~~~~~--------~~~~l~~~~~~~gvl~~~~~~ 284 (556)
+..+....+.+.|.+.++-|.. .|++|++|.|.+.|.+....+
T Consensus 2 y~~~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~ 52 (66)
T PF07495_consen 2 YSNPENIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG 52 (66)
T ss_dssp TTCCTTEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS
T ss_pred CCCCCceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC
Confidence 4456777788888777766543 588999999999999988877
No 138
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=61.33 E-value=63 Score=35.20 Aligned_cols=168 Identities=10% Similarity=0.084 Sum_probs=98.5
Q ss_pred HhHHHHHHHHH-HHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEE---Ee----eccccccC----ccccc
Q 008718 142 TGRHVRMLTHE-IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS---YT----LNNQIQIG----SSVPI 209 (556)
Q Consensus 142 ~~~~l~~~~~~-l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~---~~----~~~~~~~~----~~~~~ 209 (556)
+...+...... ...-.+.+..+..+.-.+...+...+|.+.+++.+....... .. .......+ ....+
T Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (707)
T KOG3689|consen 165 RNQVLLDLADLMFEEQTDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKKLL 244 (707)
T ss_pred HHHHHhhhhhHHHHHhcchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHhhh
Confidence 33444443333 223346666666666677777888899999888654432111 00 00001100 11122
Q ss_pred CChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec-cCCCCcc
Q 008718 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRKW 288 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~-~~~~~~~ 288 (556)
+....+.+-.+++...+++......|.........+-...+++|+. ...+..+|+..+. ...+..|
T Consensus 245 d~~l~g~va~t~~~~ni~~~~~~~~f~~q~d~~~~~~~~il~~pi~-------------~~~~~~igv~~~~nk~~g~~f 311 (707)
T KOG3689|consen 245 DYGLRGYVASTGEGLNISNAIADPRFDKQVDEDGTGIRPILCIPIK-------------NKKGEVIGVQQLVNKEDGNPF 311 (707)
T ss_pred hhhhhheeecccCcCCCCCccccccccccccccccccceeEEEecc-------------cccCceecceeeeccccCCcc
Confidence 3334455666777777777776666654433222233336677742 2234556666544 4446679
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 289 RDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (556)
Q Consensus 289 ~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~ 322 (556)
+..+..+++..+...+..+.++..|......+.+
T Consensus 312 ~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s~~r 345 (707)
T KOG3689|consen 312 SRNDEDLFEAFTIFCGLSIHNTHMYSKINKSEPR 345 (707)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhHHHHhhhccc
Confidence 9999999999999999999999988876665543
No 139
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=60.02 E-value=45 Score=31.91 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHH
Q 008718 26 ILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIA 90 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~ 90 (556)
..+-++|+.+|+...|+.+++.. ..-.+...++.+++--.-++|.+.-. |.++.|+.++..++
T Consensus 139 gAaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~--~l~sePf~~LT~iv 202 (299)
T PF05884_consen 139 GAAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHL--YLSSEPFIALTPIV 202 (299)
T ss_pred hHHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcc--cccCCcHHHHHHHH
Confidence 44567999999999997766432 22223444455555555555555554 66666776544443
No 140
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.69 E-value=1.4e+02 Score=27.17 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhHHHH----hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCC
Q 008718 123 KNRADELDREMGLILTQEET----GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT 187 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~----~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~ 187 (556)
++...+++.+...+-..++. ..-+..+...+....++++++.++-+...+.++.+.+.|-+..+.
T Consensus 51 R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~ 119 (218)
T COG3159 51 RNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDS 119 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechh
Confidence 33444455544444333333 233566777788888999999999999999999999999776543
No 141
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=59.51 E-value=18 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhh
Q 008718 26 ILIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSFIILCG 66 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~-~~~~~~~~~~~~~~fi~~~g 66 (556)
.+.++....+.+.+.|+.|++ +..-++++..+++...+..|
T Consensus 5 S~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vAy~lli~~ 46 (58)
T PF10966_consen 5 SFGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVAYILLIVS 46 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 356777888888899988854 44346777776666544443
No 142
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=55.85 E-value=62 Score=33.73 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=54.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH-
Q 008718 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM- 104 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~~a~~- 104 (556)
...++.++.||+.+.++.-..|...-.|-+.+++++ .|..++++..+.+.| +.| ..+.+++|++....
T Consensus 184 ~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag~--sfti~q~l~a~~lGP-elP--------dIig~lvsl~i~~~f 252 (522)
T COG1620 184 RQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAGL--SFTIPQFLLANFLGP-ELP--------DIIGGLVSLGILALF 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhccc-ccH--------HHHHHHHHHHHHHHH
Confidence 456788999999999999988888788888889988 899999999996643 333 34455555554443
Q ss_pred HHHHhhh
Q 008718 105 LVHIIPD 111 (556)
Q Consensus 105 l~~~ip~ 111 (556)
+..+.|+
T Consensus 253 lk~~~PK 259 (522)
T COG1620 253 LKKWQPK 259 (522)
T ss_pred HHhhCCc
Confidence 4444444
No 143
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.66 E-value=2.2e+02 Score=28.02 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008718 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
-.+..++..+.+....+.++|.-+. |..+...++.+... .+++..+.++.+++...+....+.++-.+.
T Consensus 23 Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 23 YKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3344455555677888889998775 34444444444332 455667778888888888888888877664
No 144
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=53.80 E-value=1.3e+02 Score=24.86 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHH
Q 008718 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAK 91 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~~ 91 (556)
.+-.|+.+++.+++..++-+. .+..+.+.+.++...|..-++.++.-..|+ +..+...++.
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~-~~~~~~l~~E 110 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPS-PFLWVALIFE 110 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 345577777777776665432 233445566677788889999998766554 3333333333
No 145
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=53.51 E-value=17 Score=33.05 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=38.2
Q ss_pred eeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 452 ~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+..+||.+-.-+-.++++|+.++..-.+..--....++ -+++|.-+|.|||.-.
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG---------------------k~iSvmg~GmGipS~s 71 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG---------------------KKISVMGHGMGIPSIS 71 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC---------------------cEEEEEEecCCCccHH
Confidence 35579999999999999999999854222111112222 4799999999999643
No 146
>COG4377 Predicted membrane protein [Function unknown]
Probab=51.11 E-value=45 Score=29.73 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q 008718 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCG 66 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g 66 (556)
..|.++ .|+|...+|+..+++.+|+-+...+-++.=..+|.++.+
T Consensus 8 ~~hai~---~aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~q 52 (258)
T COG4377 8 TIHAII---TAIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFSQ 52 (258)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 445554 367788889988888887766544433322223544443
No 147
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=48.44 E-value=12 Score=21.90 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.5
Q ss_pred EEEEEEEcCCC
Q 008718 511 LRVQVNDSGCG 521 (556)
Q Consensus 511 v~i~V~DnG~G 521 (556)
..|+|.|+|+-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999974
No 148
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=48.36 E-value=3.1e+02 Score=27.75 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=21.3
Q ss_pred cCCCccccccceeHHHHHHHHHHHHHhhh
Q 008718 406 EDGSLELDNGPFNLQIVLREVIKLIKPVA 434 (556)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~ 434 (556)
+.+...+...+.+..++++.+...++...
T Consensus 326 ~~~~~rv~~~~~~~~~~l~~af~~Ir~yg 354 (371)
T PF10011_consen 326 DDGRPRVIVPPPSFEDLLDDAFDQIRRYG 354 (371)
T ss_pred CCCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 34555667778888888888888887653
No 149
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.19 E-value=1.6e+02 Score=34.68 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHHH
Q 008718 26 ILIALAYFSIPVELIY 41 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~ 41 (556)
.+++++.|.+|+.+++
T Consensus 77 ~LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 77 FIFGVMAYTIPVIIVG 92 (1355)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3566778888876643
No 150
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=47.08 E-value=1.2e+02 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008718 32 YFSIPVELIYFVQKSAFFPYRWVLMQFGS 60 (556)
Q Consensus 32 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 60 (556)
++.+|+.+.++.+|+++ .+|...+.|+
T Consensus 2 ~~~~pi~l~~~~rk~~~--~~~~~f~~Ga 28 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKK--ISWKPFILGA 28 (223)
T ss_pred eehHHHHHHHHHHHhcc--chHHHHHHHH
Confidence 46789998888877654 5555555555
No 151
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=45.08 E-value=1.5e+02 Score=27.69 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=47.8
Q ss_pred hHHHHHhhhHHHHHHH---HhHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhhhhHHHHH-HhcccchhhHHHHHHHH
Q 008718 17 LVRYQYISDILIALAY---FSIPVELIYFVQKSA--FFPYRWVLMQFGSFIILCGLTHFISL-WTFTVHSKAVAVVMTIA 90 (556)
Q Consensus 17 ~~~~~~~s~~~ia~a~---~~ip~~~~~~~~~~~--~~~~~~~~~~~~~fi~~~g~~h~l~i-~~~~~~~~~~~~~~~~~ 90 (556)
.+|.|+-+|.....+- +.+|++++++...-. -.+.+|.+.+|..+ ++|+...-..+ .++.-.++.-.+++++.
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~-la~~~~~~F~i~f~~~~~aFwt~~as~l~ 181 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLA-LALLFLLRFLIQFTFGLFAFWTERASSLG 181 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhHH
Confidence 6799999999998886 788999998876553 23456666655543 46764422211 12111122223466777
Q ss_pred HHHHHHHH
Q 008718 91 KMACAFVS 98 (556)
Q Consensus 91 ~~~~a~~s 98 (556)
+..-.+..
T Consensus 182 ~~~~~l~~ 189 (268)
T COG4587 182 KFWWLLYA 189 (268)
T ss_pred HHHHHHHH
Confidence 66444433
No 152
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=44.88 E-value=2.1e+02 Score=24.84 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHhhhhHHHHHHhc
Q 008718 29 ALAYFSIPVELIYFVQKSAF--FPYRWVLMQFGSFIILCGLTHFISLWTF 76 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~--~~~~~~~~~~~~fi~~~g~~h~l~i~~~ 76 (556)
++....+.+..+++.++.+. .+.++...++..+ .++..+++.+..+
T Consensus 86 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~~~~~ 133 (169)
T PF07694_consen 86 FIIIILIGILAGLISRFFRRKSKKIKLLYLFLLSL--VISIISMLIILLL 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhccHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33444444444444333322 2333333322222 5555555555543
No 153
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=21 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=13.9
Q ss_pred EEEEEEEcCCCCCCCCh
Q 008718 511 LRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~ 527 (556)
-.++|.|+|+||..+.+
T Consensus 142 klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 142 KLLHITDTGIGMTREDL 158 (785)
T ss_pred CeeeEecccCCccHHHH
Confidence 46889999999987654
No 154
>PRK02975 putative common antigen polymerase; Provisional
Probab=43.52 E-value=1.8e+02 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.566 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhh
Q 008718 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGL 67 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~ 67 (556)
=..||.||..+++|..|-. ...|.+.+.+.. +||.
T Consensus 160 RFFYFfIPAmLv~yFL~~t--k~~Wl~fL~~tv--~FG~ 194 (450)
T PRK02975 160 RFFYFFIPAMLVVYFLRQD--SKAWLFFLVSTV--AFGL 194 (450)
T ss_pred HHHHHHHHHHHHHHhhccc--HHHHHHHHHHHH--HHhc
Confidence 3459999999988776653 367777666654 5554
No 155
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.03 E-value=83 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008718 27 LIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS 60 (556)
Q Consensus 27 ~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 60 (556)
+|+++.+.+-+.++.+.|.|.+-.++=....++.
T Consensus 22 ~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L 55 (149)
T PF11694_consen 22 LIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALL 55 (149)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 4444555555555666666666556655543333
No 156
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=42.60 E-value=1.5e+02 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCc
Q 008718 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFP 50 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~ 50 (556)
.+|+++|.+. +.+.+...++.+|.++.+
T Consensus 54 a~Hml~D~~a----l~lal~A~~~a~r~~~~~ 81 (296)
T COG1230 54 ALHMLSDALA----LLLALIAIKLARRPATKR 81 (296)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhcCCCCCC
Confidence 4688888653 344555556666665543
No 157
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=42.08 E-value=2.5e+02 Score=30.68 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=30.7
Q ss_pred hHHHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHH
Q 008718 17 LVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISL 73 (556)
Q Consensus 17 ~~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i 73 (556)
+..++.=++.--++|+..+|+.+.+..+..+.-..+++.. .+..+-+..+||++..
T Consensus 68 l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~-lAl~~all~lsHll~~ 123 (616)
T PF10131_consen 68 LRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWIL-LALSMALLALSHLLST 123 (616)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHhHHHH
Confidence 3345555777778899999998865444322222333332 2223335566774443
No 158
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=40.76 E-value=1.6e+02 Score=31.23 Aligned_cols=57 Identities=7% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008718 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~ 77 (556)
.+...+-....+.++.+|+.+.++..+.|...-.|.+.+++++ .++..+.+..+...
T Consensus 175 ~l~~~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~~~g 231 (522)
T PF02652_consen 175 ELSSMVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVANFLG 231 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence 3344444555678888999999998887777667777777776 66667666655443
No 159
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=40.31 E-value=19 Score=37.80 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.6
Q ss_pred EEEEEEEcCCCCCCCCh
Q 008718 511 LRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~ 527 (556)
-.++|.|+|+||+.+++
T Consensus 102 ~tlti~DtGIGMTk~dL 118 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDL 118 (656)
T ss_pred ceEEEEecCCCcCHHHH
Confidence 57999999999997765
No 160
>COG3462 Predicted membrane protein [Function unknown]
Probab=38.88 E-value=1.7e+02 Score=23.34 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHH-Hhcccchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008718 51 YRWVLMQFGSFIILCGLTHFISL-WTFTVHSK----AVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKT 117 (556)
Q Consensus 51 ~~~~~~~~~~fi~~~g~~h~l~i-~~~~~~~~----~~~~~~~~~~~~~a~~s~~~a~~l~~~ip~~l~~~~ 117 (556)
+-|++.=..+.+...++..+... +++|+..+ ..+.-..++.++-++++++..+....++-....-.+
T Consensus 8 ~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~ 79 (117)
T COG3462 8 FAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444333334444444444333 24444433 111122255566666666555544444444444333
No 161
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=38.46 E-value=64 Score=26.06 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 008718 55 LMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 55 ~~~~~~fi~~~g~~h~l~i~ 74 (556)
..+|+.-|+++-++|.+.|+
T Consensus 61 ~iffavcI~l~~~s~~lLI~ 80 (118)
T PF10856_consen 61 HIFFAVCILLICISAILLIF 80 (118)
T ss_pred EEehHHHHHHHHHHHHhhee
Confidence 34455544444445555444
No 162
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=38.13 E-value=87 Score=29.07 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=38.5
Q ss_pred eeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCC
Q 008718 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (556)
Q Consensus 452 ~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~ 524 (556)
++.+||.+..+|-. +++|+.+-+....-.......++ -.++|.-+|+|.|.
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g---------------------~~v~v~StGIGgPS 71 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG---------------------KPVTVCSTGIGGPS 71 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC---------------------eEEEEEecCCCCch
Confidence 46699999999887 88999887765544444444443 46999999999985
No 163
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=37.32 E-value=5.4e+02 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccHHH
Q 008718 89 IAKMACAFVSCITALMLVHIIPDLLSVKTREL 120 (556)
Q Consensus 89 ~~~~~~a~~s~~~a~~l~~~ip~~l~~~~~~~ 120 (556)
+.-++..+.+-+.++++.+++....++.+.-.
T Consensus 437 ~~~flsGl~s~il~iGllP~fE~~F~~~T~~r 468 (700)
T COG1480 437 IFAFLSGLLSGILVLGLLPYFEALFGLLTTFR 468 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 33344444455555666676666677766443
No 164
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=36.26 E-value=2.9e+02 Score=27.13 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH-HHHHhhhhHHHHHHhcc---cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 008718 38 ELIYFVQKSAFFPYRWVLMQFGS-FIILCGLTHFISLWTFT---VHSKAVAVVMTIAKMACAFV-SCITALMLVHIIP 110 (556)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~-fi~~~g~~h~l~i~~~~---~~~~~~~~~~~~~~~~~a~~-s~~~a~~l~~~ip 110 (556)
...|++.+++-.||-++..+.+. ++...|...+.++-.+| .++.|.+|=.+.+..-+|+. ++++.+....+++
T Consensus 72 sa~yvFn~~~ykpfar~a~~~s~~~ii~a~lsIlpDiGR~~lyp~f~s~~~fn~~sv~~y~al~~~iY~~vl~~~~la 149 (401)
T COG5557 72 SAVYVFNRGQYKPFARPALLASLFGIILAGLSILPDIGRYWLYPYFYSPGHFNVNSVLFYTALCMTIYIGVLALEFLA 149 (401)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHhhcccccchhccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666688888877776 66677777777776533 33445555556666666664 7777777666443
No 165
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=36.09 E-value=3.2e+02 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHhcC
Q 008718 24 SDILIALAYFSIPVELIYFVQKSA 47 (556)
Q Consensus 24 s~~~ia~a~~~ip~~~~~~~~~~~ 47 (556)
.|.-..+.++.-++...|.++|.|
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~ 125 (194)
T PF07698_consen 102 FDFEFFLYSLVSGIVAIFSVRRIR 125 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777788888777654
No 166
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=43 Score=31.69 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008718 321 NQLMEQNVALDSARREAEKAIHA 343 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~ 343 (556)
++|.+++++|++..+++.+++++
T Consensus 67 ~eL~~rqeEL~Rke~ELdRREr~ 89 (313)
T KOG3088|consen 67 AELLKKQEELRRKEQELDRRERA 89 (313)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555444444444443
No 167
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.84 E-value=2.2e+02 Score=21.81 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 008718 123 KNRADELDREMGLILT 138 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~ 138 (556)
.+....++++.+.+..
T Consensus 32 ~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 3344444444444433
No 168
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=33.83 E-value=1.9e+02 Score=21.18 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHhHHHH
Q 008718 93 ACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHVR 147 (556)
Q Consensus 93 ~~a~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 147 (556)
+..++-++++++.|. ++..+++++...+.++.+...+.
T Consensus 29 ~LtPlfiisa~lSwk-----------------LaK~ie~~ere~K~k~Kr~~~i~ 66 (74)
T PF15086_consen 29 ILTPLFIISAVLSWK-----------------LAKAIEKEEREKKKKAKRQANIA 66 (74)
T ss_pred HHhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777 55666665555555555544433
No 169
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=33.57 E-value=3.6e+02 Score=29.98 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHh
Q 008718 29 ALAYFSIPVELIYFVQK 45 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~ 45 (556)
++|.+.+-+.+.|++++
T Consensus 203 ~l~~~l~vivL~~~fr~ 219 (727)
T COG1033 203 ALAVILMVIVLYYVFRS 219 (727)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 170
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=33.39 E-value=3.2e+02 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHhhh
Q 008718 30 LAYFSIPVELIYFVQKSAF----FPYRWVLMQFGSFIILCGL 67 (556)
Q Consensus 30 ~a~~~ip~~~~~~~~~~~~----~~~~~~~~~~~~fi~~~g~ 67 (556)
++....++..+++.+|.+. ..+.|.....+++..+++.
T Consensus 80 i~~~~~g~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (169)
T PF07155_consen 80 ISKGLMGFIAGLIFRKKKKKKKSKSFNILAIILGALIMVIGY 121 (169)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3444556666676666532 1245555545554444443
No 171
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.57 E-value=1.8e+02 Score=20.64 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008718 50 PYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~h~l~i~~~~ 77 (556)
+++-++..++.|+-+.|+.-.+.-..+-
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD 32 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFD 32 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4566777788888888877666666554
No 172
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.09 E-value=2.3e+02 Score=21.58 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHH
Q 008718 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~ 74 (556)
++.|..|-+-+.+| +|++-.+++...+++.++++.-...-+.++
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~i~~l 47 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVPIRIL 47 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888776 333434555555555543333333333443
No 173
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=31.55 E-value=3.3e+02 Score=23.22 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=39.1
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHH-------HHHHHHHHHhhhhH-HHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Q 008718 29 ALAYFSIPVELIYFVQKSAFFPYRWVL-------MQFGSFIILCGLTH-FISLWTFTVHSKAVAVVMTIAKMACAFVSCI 100 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~-------~~~~~fi~~~g~~h-~l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~ 100 (556)
.+||.|.......+-.+-.|..++.++ +-|+..-+..|.+| ++.=|.+ ..--+||+..+....+++++++
T Consensus 40 lmaylSL~~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~~Wsl--siM~wYWll~LlLyl~tiisLV 117 (161)
T PF13042_consen 40 LMAYLSLYILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLGKWSL--SIMMWYWLLILLLYLITIISLV 117 (161)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 678999888877654443344444441 22333222344444 3444422 1234577777777776666655
Q ss_pred HHH
Q 008718 101 TAL 103 (556)
Q Consensus 101 ~a~ 103 (556)
+-+
T Consensus 118 iLV 120 (161)
T PF13042_consen 118 ILV 120 (161)
T ss_pred HHh
Confidence 444
No 174
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=31.06 E-value=4.1e+02 Score=26.74 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhhhHHHHHHh
Q 008718 26 ILIALAYFSIPVELIYFVQKSA-FFPYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~-~~~~~~~~~~~~~fi~~~g~~h~l~i~~ 75 (556)
+--..+|+.+++++++...++= --++++.. ...+.+.+.|..|...+.-
T Consensus 129 lG~~~~yi~~~lllV~~l~~~i~Ye~WR~~H-~lm~vvYilg~~H~~~l~~ 178 (438)
T COG4097 129 LGEWSAYIFIGLLLVWRLWLNIGYENWRIAH-RLMAVVYILGLLHSYGLLN 178 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 3345678889988887554442 23567766 3555667889999998873
No 175
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=30.66 E-value=2.4e+02 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=15.4
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHH
Q 008718 41 YFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~ 74 (556)
|-+.++.|-...|+. +++|+......-++.++
T Consensus 17 y~~trk~dp~l~~~m--l~a~l~~~~v~v~ig~l 48 (224)
T PF13829_consen 17 YKMTRKEDPKLPWLM--LGAFLGPIAVFVLIGLL 48 (224)
T ss_pred HHHHHHHCcchHHHH--HHHHHHHHHHHHHHHHH
Confidence 445555554445544 45554444444444444
No 176
>COG4420 Predicted membrane protein [Function unknown]
Probab=30.64 E-value=3.9e+02 Score=23.83 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHH
Q 008718 80 SKAVAVVMTIAKMA 93 (556)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (556)
.||+.|+..++...
T Consensus 86 pyPFi~LnLllS~~ 99 (191)
T COG4420 86 PYPFILLNLLLSTL 99 (191)
T ss_pred CccHHHHHHHHHHH
Confidence 57887766665443
No 177
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=30.07 E-value=3.1e+02 Score=25.50 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008718 62 IILCGLTHFISLWTFTVHSKAVAVVMTIAKMACA 95 (556)
Q Consensus 62 i~~~g~~h~l~i~~~~~~~~~~~~~~~~~~~~~a 95 (556)
+.++-.+.++..|-+..|+++-+....+.-.+++
T Consensus 80 ~~lsl~~~~~~L~Ff~vpS~~~r~l~~vl~~Lll 113 (232)
T PF10329_consen 80 TLLSLITNLFNLWFFGVPSKLERILNIVLAGLLL 113 (232)
T ss_pred HHHHHHHHHHHHHheecCcHHHHHHHHHHHHHHH
Confidence 3344445555555567777665544333333333
No 178
>COG4325 Predicted membrane protein [Function unknown]
Probab=29.72 E-value=6e+02 Score=25.63 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC
Q 008718 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT 475 (556)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~ 475 (556)
+...+-..+.+..+++.++...++..- .+.+. -...|.+++.-+..|+.+++
T Consensus 362 g~lR~~~~~~~~a~~l~~afaqI~ryG------------a~~~~----V~~~L~~~la~iatn~~d~s 413 (464)
T COG4325 362 GELRFWLPYPSFATYLHVAFAQIRRYG------------AREPL----VLTALLQLLAAIATNCVDPS 413 (464)
T ss_pred ccEEEEecCccHHHHHHHHHHHHHHhc------------ccchH----HHHHHHHHHHHHHHhCcChh
Confidence 344555667777888888887776431 11111 23456666666666666654
No 179
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=29.20 E-value=3e+02 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 008718 80 SKAVAVVMTIAKMACAF 96 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~a~ 96 (556)
+..+.-+.|++..+-|+
T Consensus 60 s~~Ia~ilGlGRGlDaL 76 (121)
T COG2456 60 SGEIAEILGLGRGLDAL 76 (121)
T ss_pred HHHHHHHhccccccchh
Confidence 33444455666655554
No 180
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=28.93 E-value=1.6e+02 Score=30.63 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcccch
Q 008718 54 VLMQFGSFIILCGLTHFISLWTFTVHS 80 (556)
Q Consensus 54 ~~~~~~~fi~~~g~~h~l~i~~~~~~~ 80 (556)
.|++|+++ +|..|-++.+++-..|.
T Consensus 477 ~fi~f~a~--LC~~ta~LAilthq~P~ 501 (539)
T PF04184_consen 477 FFILFTAG--LCSFTAILAILTHQFPE 501 (539)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhccH
Confidence 55778888 99999999999866553
No 181
>PF15449 Retinal: Retinal protein
Probab=28.56 E-value=9.8e+02 Score=27.79 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~i 530 (556)
-..+|.+++.-|=.-|..|+..|. .+ .-+.=+|.|+|-+.|.+...
T Consensus 323 ~de~llr~l~~le~~a~g~~~p~~--------~~---------------------~~L~SEDSGiGadneS~~~~ 368 (1287)
T PF15449_consen 323 VDERLLRALGQLESLASGHGDPGV--------QD---------------------LPLCSEDSGIGADNESVQSV 368 (1287)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC--------CC---------------------CccccccccCCccchhhhhh
Confidence 445677888877777777776541 01 34666899999987776543
No 182
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=28.50 E-value=6.5e+02 Score=26.99 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHH
Q 008718 31 AYFSIPVELIYFV 43 (556)
Q Consensus 31 a~~~ip~~~~~~~ 43 (556)
++|.||.+.++|-
T Consensus 160 ~~~~ip~~~gff~ 172 (952)
T TIGR02921 160 AFFAIPAAAGFFE 172 (952)
T ss_pred HHHhhhHHhHHHH
Confidence 4455555555443
No 183
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=28.47 E-value=4.3e+02 Score=23.54 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=45.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008718 25 DILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM 104 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~~a~~ 104 (556)
...|+.|-+..++.+.. . ++.|......+++.|.++=|..|=.++..-.. +..+..|++-...++...+..+.
T Consensus 82 E~~Ia~Sv~~~G~ll~~--~--~r~~~~~~~~l~a~falfHG~ahG~e~~~~~~---~~~y~~G~~~at~~l~~~g~~~~ 154 (180)
T PF04955_consen 82 ETGIAASVLVLGLLLAF--G--RRLPLWLALLLVALFALFHGYAHGAEMPGAAS---GLLYAAGFVLATALLHAAGLALG 154 (180)
T ss_pred HHHHHHHHHHHHHHHHh--h--hccchhHHHHHHHHHHHHHhhhhHhhhccccc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777666655552 2 23466667778888988999999999873222 23345676666555555544444
No 184
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.38 E-value=2.7e+02 Score=22.48 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008718 56 MQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAF-VSCITALMLVH 107 (556)
Q Consensus 56 ~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~~~~~a~-~s~~~a~~l~~ 107 (556)
-.||..+++.|+.-+..-. +|.++ +++.+++..+..+ +...+++..|.
T Consensus 12 R~~al~lif~g~~vmy~gi-~f~~~---~~im~ifmllG~L~~l~S~~VYfwI 60 (114)
T PF11023_consen 12 RTFALSLIFIGMIVMYIGI-FFKAS---PIIMVIFMLLGLLAILASTAVYFWI 60 (114)
T ss_pred HHHHHHHHHHHHHHHhhhh-hhccc---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666555433 34433 3445555554433 22233444444
No 185
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=28.22 E-value=3.7e+02 Score=22.78 Aligned_cols=47 Identities=17% Similarity=0.426 Sum_probs=34.9
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008718 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~ 77 (556)
|+++|+.+++..+...... -+++....+-.+++..|..|++.+-.+.
T Consensus 3 i~lg~~~~G~~fG~la~~~---G~~~~~~~~mS~lvfaGa~Qf~~~~l~~ 49 (143)
T PF03591_consen 3 IALGYIPFGIAFGVLAVEA---GFSWWEAILMSLLVFAGAAQFVAVGLLA 49 (143)
T ss_pred chHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4679999999999866554 4555555566667789999999987544
No 186
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=28.16 E-value=2.1e+02 Score=22.22 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhccc
Q 008718 21 QYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV 78 (556)
Q Consensus 21 ~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~~ 78 (556)
++++|.+.+.--|.. +..|.++++........++|+..+++.+..|.-.++.+..
T Consensus 12 ~y~GDvL~~~~vy~~---~~~~~p~~~~~~~~~~~l~~~~~IE~~Ql~~~~~~~~~r~ 66 (91)
T PF10990_consen 12 PYLGDVLYVVLVYCL---VRFFFPRKSPKRLAIAALLFAFAIEFLQLYHAPWLLGIRS 66 (91)
T ss_pred hcccHHHHHHHHHHH---HHHHHcccchhHHHHHHHHHHHHHHHHHHHhHHHHHcccc
Confidence 578898887654432 2223334343345566677888888888888888875543
No 187
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=27.82 E-value=70 Score=17.47 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=12.5
Q ss_pred hHHHHHHHHhHHHHHHH
Q 008718 25 DILIALAYFSIPVELIY 41 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~ 41 (556)
+.+|+++.++|...+.|
T Consensus 5 EvlIa~~i~~i~~~g~~ 21 (22)
T PF13633_consen 5 EVLIAIAILGILALGAY 21 (22)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 45778888888877654
No 188
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=27.77 E-value=4.2e+02 Score=23.49 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=32.9
Q ss_pred HHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHH
Q 008718 59 GSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120 (556)
Q Consensus 59 ~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~~~~~~~a~~s~~~a~~l~~~ip~~l~~~~~~~ 120 (556)
+++.++++-.-++.=+|+|..++ .+.-|+|-+++.+++++...+.-.--.-++-+.
T Consensus 97 ~gl~~l~~q~~~l~rLTf~e~sW------DvMEPVTYfv~~~~~i~~y~yfl~t~re~sy~~ 152 (180)
T PF04678_consen 97 GGLALLVVQFGILARLTFWEYSW------DVMEPVTYFVGYGTSILGYAYFLYTRREYSYES 152 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc------chhhhHHHHHhHHHHHHHHHHHHHhCCCCChHH
Confidence 33433444444444456665443 567899999999998876655444444444333
No 189
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.04 E-value=1.7e+02 Score=27.91 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHh
Q 008718 23 ISDILIALAYFSIPVELIYFVQK 45 (556)
Q Consensus 23 ~s~~~ia~a~~~ip~~~~~~~~~ 45 (556)
..|++.|+-||.+..=..|....
T Consensus 162 ~~~f~Laii~fllftPcsyVcWy 184 (313)
T KOG3088|consen 162 GTIFGLAIIWFLLFTPCSYVCWY 184 (313)
T ss_pred chhhHHHHHHHHHhCCceeeEee
Confidence 34556666677665555554333
No 190
>PRK05415 hypothetical protein; Provisional
Probab=26.67 E-value=6.5e+02 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=12.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHhhhC
Q 008718 150 THEIRSTLDRHTILKTTLVELGRTLG 175 (556)
Q Consensus 150 ~~~l~~~l~~~~il~~~~~~l~~~l~ 175 (556)
+..+..+.+..+ .+..|+.+.+..+
T Consensus 138 a~~l~~~~~~~~-a~~~~~~l~~~~~ 162 (341)
T PRK05415 138 ARALLHSHDVGE-ARAFCEKLAKQAG 162 (341)
T ss_pred HHHHHhcCChhh-HHHHHHHHHHHhC
Confidence 333444444444 5566666665543
No 191
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=26.59 E-value=4.5e+02 Score=23.23 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=47.2
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcC----CCc------hhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHH
Q 008718 19 RYQYISDILIALAYFSIPVELIYFVQKSA----FFP------YRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMT 88 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~----~~~------~~~~~~~~~~fi~~~g~~h~l~i~~~~~~~~~~~~~~~ 88 (556)
..|..+|.+.-+.|+.+.+.+.|...|++ +.+ ..++..+.+..+...+++.++.-.+ +- +..+
T Consensus 42 ~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~--~~~~--- 114 (181)
T PF04973_consen 42 QAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLT--DS--PFPW--- 114 (181)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CC--chHH---
Confidence 45678999999999999999998887533 121 2334444444545555555555442 11 2222
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008718 89 IAKMACAFVSCITALMLVH 107 (556)
Q Consensus 89 ~~~~~~a~~s~~~a~~l~~ 107 (556)
...++...|+.+.+.+.+
T Consensus 115 -~Da~~~~~siva~~l~~~ 132 (181)
T PF04973_consen 115 -LDALTTVLSIVAQWLMAR 132 (181)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 245555566665555444
No 192
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=26.51 E-value=4.5e+02 Score=23.16 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHH
Q 008718 107 HIIPDLLSVKTRELFLKNRADELDREMGLILTQEE 141 (556)
Q Consensus 107 ~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (556)
.++-.....+.+.-..+++...++++.++++.+.+
T Consensus 142 ~~l~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 142 CFLTGLVGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred HHHccccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444455566667777766665543
No 193
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.39 E-value=3.7e+02 Score=26.36 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 300 ADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHE 354 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~He 354 (556)
+-.++..+.+..+...+......+++.+.+++...+++++.+...++|...++-.
T Consensus 21 GI~lG~~~l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 21 GIVLGSGPLQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred HHHhcchhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555556666666777777777777777777777677776665543
No 194
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=25.62 E-value=4.3e+02 Score=22.60 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=26.3
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHH-HhcCCCchhHHHHHHHHH
Q 008718 20 YQYISDILIALAYFSIPVELIYFV-QKSAFFPYRWVLMQFGSF 61 (556)
Q Consensus 20 ~~~~s~~~ia~a~~~ip~~~~~~~-~~~~~~~~~~~~~~~~~f 61 (556)
.....+.+++++++.-.+.+.+.. +|++.+|.-.+.++....
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v 96 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISV 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 345677788887777777777654 445556655555554444
No 195
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=25.25 E-value=9.1e+02 Score=26.31 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=28.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEecc
Q 008718 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 146 l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
...+.+..+...|..+.|-.--..+..+++++.+++|+-+
T Consensus 330 ~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~ 369 (750)
T COG4251 330 HARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGG 369 (750)
T ss_pred HHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECC
Confidence 3444555556666666666667788899999999998765
No 196
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=24.95 E-value=2.6e+02 Score=21.65 Aligned_cols=32 Identities=22% Similarity=0.613 Sum_probs=20.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHh--cC--CCchhHHHH
Q 008718 25 DILIALAYFSIPVELIYFVQK--SA--FFPYRWVLM 56 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~--~~--~~~~~~~~~ 56 (556)
.++.+++.|..+....||..+ +| .+|++|-++
T Consensus 27 Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~L 62 (94)
T PF15110_consen 27 AFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNIL 62 (94)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhH
Confidence 467788888888888877553 23 446666554
No 197
>PF13974 YebO: YebO-like protein
Probab=24.90 E-value=2.8e+02 Score=20.90 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhc
Q 008718 100 ITALMLVHIIPDLL 113 (556)
Q Consensus 100 ~~a~~l~~~ip~~l 113 (556)
..++.+|+|+-.+-
T Consensus 9 lv~livWFFVnRaS 22 (80)
T PF13974_consen 9 LVGLIVWFFVNRAS 22 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445566554443
No 198
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=24.89 E-value=2.4e+02 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhccc
Q 008718 54 VLMQFGSFIILCGLTHFISLWTFTV 78 (556)
Q Consensus 54 ~~~~~~~fi~~~g~~h~l~i~~~~~ 78 (556)
+|++||+..++.....++.++.|-.
T Consensus 14 wFLF~~AIFiAItIlYILLalL~Ev 38 (117)
T PF07234_consen 14 WFLFFGAIFIAITILYILLALLFEV 38 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555777655555555555554443
No 199
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=24.72 E-value=3.1e+02 Score=28.47 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=25.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008718 41 YFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~ 77 (556)
+++.++++ |+++-..+...|-..|.....+.+.+-+
T Consensus 185 ~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy~G 220 (512)
T KOG2493|consen 185 HSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVYDG 220 (512)
T ss_pred HHHHHhcC-chhhchhhcchhhhhhhhheeeeEEecC
Confidence 34445667 8999888889888788777777666433
No 200
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.70 E-value=5.3e+02 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHh
Q 008718 19 RYQYISDILIALAYFSIPVELIYFVQK 45 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~ 45 (556)
|+..+-.+++.++.|++=..+..++..
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555556666666655555555554
No 201
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=24.67 E-value=2.6e+02 Score=29.72 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=8.0
Q ss_pred hhHHHHHhhhHHHH
Q 008718 16 LLVRYQYISDILIA 29 (556)
Q Consensus 16 ~~~~~~~~s~~~ia 29 (556)
.|-|+++....+.-
T Consensus 136 glqw~~l~~~~~ml 149 (952)
T TIGR02921 136 GLQWLQLLAAMLML 149 (952)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677776555443
No 202
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=24.33 E-value=2.6e+02 Score=19.75 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHh
Q 008718 50 PYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~h~l~i~~ 75 (556)
.......++|.+.++.|..++...+.
T Consensus 20 ~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 20 SLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888888999999988876
No 203
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=24.33 E-value=1.4e+02 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHH
Q 008718 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~h~l~i~ 74 (556)
-..|.+-++|.++++.|+.-++.++
T Consensus 181 ~~tW~lR~~G~llmf~G~~~~~~~l 205 (248)
T PF07787_consen 181 TLTWILRFIGWLLMFIGFFLLFSPL 205 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777877777665
No 204
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=24.25 E-value=1.4e+02 Score=18.95 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHH
Q 008718 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~h~l~i~ 74 (556)
|+.....++++|.+++-..|++...
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556677787788888888776
No 205
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.24 E-value=4.8e+02 Score=25.20 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008718 312 ILEDSMRARNQLMEQ 326 (556)
Q Consensus 312 ~~~~~~~~~~~l~~~ 326 (556)
++++.++.++++.+.
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 206
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=23.47 E-value=7.7e+02 Score=24.84 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhhcc
Q 008718 160 HTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLV 239 (556)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
.++++.+++.+.+.++.+-..+ +......+.+-. ..+-..+.....++.+++.+.+.....
T Consensus 8 ~~lAq~IV~~~~~ii~~ninim-----d~~G~IIaS~d~------~Rig~~HegA~~~~~~~~~~~i~~~~~-------- 68 (385)
T PRK11477 8 TKMAQDIVARTMRIIDTNINVM-----DARGRIIGSGDR------ERIGELHEGALLVLSQGRVVDIDDAVA-------- 68 (385)
T ss_pred HHHHHHHHHHHHHHcCCCeEEE-----CCCCEEEecCCh------HHcccccHHHHHHHhcCCeeeecHHHH--------
Confidence 3557778888888877765555 444443332211 122223445566777777777653221
Q ss_pred cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC
Q 008718 240 GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (556)
Q Consensus 240 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~ 283 (556)
....+.+..+.+| +.-++..+||+.+..+
T Consensus 69 -~~~~g~k~GiN~P--------------i~~~~~viGvIgItG~ 97 (385)
T PRK11477 69 -RHLHGVRQGINLP--------------LRLEGEIVGVIGLTGE 97 (385)
T ss_pred -hhcCCCCcCceee--------------EEECCEEEEEEecCCC
Confidence 1112334555667 5567778999987643
No 207
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=23.00 E-value=7.2e+02 Score=24.32 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~ 172 (556)
--..+..+.+.++.+....+.++.+.++..+
T Consensus 138 lP~aLdlivr~l~aG~~l~dAl~~~~~e~~~ 168 (309)
T COG4965 138 LPEALDLIVRALRAGAPLPDALRLAAKETPE 168 (309)
T ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHhhCCC
Confidence 4456778888899999888888777776533
No 208
>PF14150 YesK: YesK-like protein
Probab=22.94 E-value=3.4e+02 Score=20.55 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhhhhHHHHHHh
Q 008718 27 LIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 27 ~ia~a~~~ip~~~~~~~~~~-~~~~~~~~~~~~~~fi~~~g~~h~l~i~~ 75 (556)
++.++++.+-....++.||+ ++.++.|++.+ ..++.|=.+-...+..
T Consensus 3 llg~~~~ii~f~~S~~lr~r~p~k~~~~il~~--ililis~~~v~~S~f~ 50 (81)
T PF14150_consen 3 LLGIVTFIIVFGVSVLLRKRFPKKQPEIILPL--ILILISLLTVLISIFL 50 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH--HHHHHHHHHHHHHHhe
Confidence 45677888888888887766 45556665542 2344555455555443
No 209
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.84 E-value=6.7e+02 Score=23.91 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHc
Q 008718 123 KNRADELDREMGLILTQEETGRHVRMLTHEIRS 155 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 155 (556)
.+..++|+++...++.+...++.+.+--..|++
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555444433333333
No 210
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=21.76 E-value=6.4e+02 Score=23.29 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhc
Q 008718 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTF 76 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~ 76 (556)
.=|+++|+.+++..+....+. . +++....+-.+++..|..|++.+-.+
T Consensus 10 lPi~lgyip~G~afGila~~~-G--ls~~~a~lmS~~vfAGaaQf~~v~ll 57 (221)
T TIGR00346 10 IPILAGFLFLGIAYGILMVQL-G--FDYKYPLFMSLFIYAGSVEFVAATLL 57 (221)
T ss_pred ChHHHHHHHHHHHHHHHHHHC-C--CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 447889999999999876554 3 33333334445568899998888654
No 211
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=21.57 E-value=4.9e+02 Score=21.87 Aligned_cols=90 Identities=8% Similarity=0.073 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhhccc
Q 008718 161 TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240 (556)
Q Consensus 161 ~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
++.+.+++.+.+.++.+--.+ +......+.+-. ..+-.-+.....++.+++...+......
T Consensus 4 ~~Aq~Iv~~~~~~i~~~inim-----d~~G~IIAStd~------~RIG~~HegA~~~i~~~~~~~i~~~~~~-------- 64 (135)
T PF05651_consen 4 ELAQKIVDEIMEIIGYNINIM-----DENGIIIASTDP------ERIGTFHEGAKEVIRTNKEIEITEEDAE-------- 64 (135)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-----CCCcEEEecCCh------hhcCccCHHHHHHHHcCCcccccHhHHh--------
Confidence 457788888888888754333 333333322211 1222334556777777766555432210
Q ss_pred CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC
Q 008718 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 241 ~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~ 284 (556)
...+.+.-+..| +.-++..+|++.+.-+.
T Consensus 65 -~~~g~k~GinlP--------------I~~~g~~iGviGItG~p 93 (135)
T PF05651_consen 65 -QYPGVKPGINLP--------------IIFNGEVIGVIGITGEP 93 (135)
T ss_pred -hccCCCcceeee--------------EEECCEEEEEEEEecCH
Confidence 112344455666 55667789998876654
No 212
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=21.19 E-value=3.8e+02 Score=20.46 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008718 36 PVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 36 p~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~i~~~~ 77 (556)
...++|+.+..+.-..+.-=.+|++.-++||..-+..-|.+.
T Consensus 18 ~~~~Ly~lr~~~Pev~Rd~D~~fs~vgLl~g~IL~~~gwRld 59 (84)
T PF07444_consen 18 GGLALYFLRFFRPEVSRDYDIFFSSVGLLYGLILWFQGWRLD 59 (84)
T ss_pred HHHHHHHHHHHCcchhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 455566666554222333334466666788887777777665
No 213
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=21.19 E-value=5.8e+02 Score=25.79 Aligned_cols=43 Identities=19% Similarity=0.023 Sum_probs=20.9
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhh
Q 008718 22 YISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT 68 (556)
Q Consensus 22 ~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~ 68 (556)
-+.-+.-....+.+|+.... ++|...--++.....++-+||+.
T Consensus 250 sl~~l~~~~~~ll~P~la~R----~~n~r~~~~~~~~~~l~G~~G~~ 292 (395)
T COG2807 250 SLMQLAQLPTALLIPLLARR----SKNQRPLVVLALLLMLVGLVGLL 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hcccchHHHHHHHHHHHHHHHHH
Confidence 34455556667777776554 34421111222233345566654
No 214
>PF15576 DUF4661: Domain of unknown function (DUF4661)
Probab=21.14 E-value=4.7e+02 Score=23.33 Aligned_cols=66 Identities=15% Similarity=0.004 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHH-HHhcccchhhHHHHHHHHHHHHHHHHH
Q 008718 31 AYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFIS-LWTFTVHSKAVAVVMTIAKMACAFVSC 99 (556)
Q Consensus 31 a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~h~l~-i~~~~~~~~~~~~~~~~~~~~~a~~s~ 99 (556)
+..|=|+-+..=...-+-----|..++.. |+.+.-..|.+. .++-.+ ..|.-+.+++.++...||+
T Consensus 184 ~lcS~Plr~~LdaLGlrGPlgLWLHGlls-Fl~alhglha~L~lltahp--~hFAclfGllQaLVlaVSl 250 (253)
T PF15576_consen 184 GLCSRPLRAALDALGLRGPLGLWLHGLLS-FLAALHGLHAVLSLLTAHP--LHFACLFGLLQALVLAVSL 250 (253)
T ss_pred HhccchHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHheeec
Confidence 44555655544333333211345555333 333333334333 333332 2455566777776665553
No 215
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=21.01 E-value=5.7e+02 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.124 Sum_probs=5.0
Q ss_pred HHHHhHHHHHHH
Q 008718 30 LAYFSIPVELIY 41 (556)
Q Consensus 30 ~a~~~ip~~~~~ 41 (556)
.|.+++.+...+
T Consensus 99 gAL~s~aLi~w~ 110 (179)
T PF14936_consen 99 GALLSIALIFWN 110 (179)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 216
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=20.90 E-value=3.4e+02 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=6.7
Q ss_pred HHHHHhHHHHHHHHHH
Q 008718 29 ALAYFSIPVELIYFVQ 44 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~ 44 (556)
.++.+.+.+.++.+..
T Consensus 18 ~l~~~~~~~~~~~~~~ 33 (176)
T PF13567_consen 18 LLALLLLLLLLLLFFR 33 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 217
>PRK13661 hypothetical protein; Provisional
Probab=20.53 E-value=6.2e+02 Score=22.60 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHhhhHHH
Q 008718 21 QYISDILI 28 (556)
Q Consensus 21 ~~~s~~~i 28 (556)
|.++|++.
T Consensus 64 ~~L~dll~ 71 (182)
T PRK13661 64 HALKDFIA 71 (182)
T ss_pred HHHHHHHc
Confidence 56666653
No 218
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=20.51 E-value=3.5e+02 Score=20.73 Aligned_cols=31 Identities=32% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHhcCC
Q 008718 18 VRYQYISDILIALAYFSIPVELIYFVQKSAF 48 (556)
Q Consensus 18 ~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~ 48 (556)
+..-.-||-.++.+.-+....++|+.-+...
T Consensus 17 v~~~R~sDy~~~a~~ta~~p~~~~~~~~~~~ 47 (86)
T PF10785_consen 17 VRYFRPSDYAIWAGATAASPPLGYYMERSAP 47 (86)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444578999998888888888887666543
Done!