Query 008718
Match_columns 556
No_of_seqs 356 out of 3650
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 6.6E-30 2.3E-34 244.8 22.6 200 337-556 13-220 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 1.1E-27 3.6E-32 230.8 21.3 203 328-556 24-228 (268)
3 3a0r_A Sensor protein; four he 99.9 8.4E-26 2.9E-30 226.3 19.7 186 342-556 130-317 (349)
4 1gkz_A [3-methyl-2-oxobutanoat 99.9 3.8E-26 1.3E-30 231.5 15.1 195 340-556 117-345 (388)
5 3jz3_A Sensor protein QSEC; he 99.9 6.8E-27 2.3E-31 218.4 7.5 187 344-556 2-189 (222)
6 3d36_A Sporulation kinase B; G 99.9 3.4E-25 1.2E-29 210.1 14.2 186 341-556 11-197 (244)
7 2btz_A Pyruvate dehydrogenase 99.9 3.7E-25 1.3E-29 224.6 13.9 189 346-556 97-322 (394)
8 2e0a_A Pyruvate dehydrogenase 99.9 1.3E-24 4.5E-29 220.4 17.4 188 346-556 97-322 (394)
9 2q8g_A [pyruvate dehydrogenase 99.9 1.4E-24 4.8E-29 221.2 16.2 190 344-556 106-335 (407)
10 4fpp_A Phosphotransferase; fou 99.9 5.5E-24 1.9E-28 201.5 14.0 171 347-556 49-221 (247)
11 1y8o_A [pyruvate dehydrogenase 99.9 1.1E-23 3.6E-28 215.3 15.2 190 344-556 118-346 (419)
12 3ehh_A Sensor kinase (YOCF pro 99.8 7.4E-20 2.5E-24 170.0 15.8 163 342-556 26-190 (218)
13 1b3q_A Protein (chemotaxis pro 99.8 2.1E-20 7.1E-25 187.9 11.2 172 343-556 9-220 (379)
14 3a0y_A Sensor protein; ATP-LID 99.7 8.3E-18 2.8E-22 146.5 11.6 118 413-556 2-120 (152)
15 1id0_A PHOQ histidine kinase; 99.7 1.2E-17 4.3E-22 145.4 12.3 116 415-556 2-117 (152)
16 1ysr_A Sensor-type histidine k 99.7 1.5E-17 5.2E-22 144.6 10.8 118 413-556 4-121 (150)
17 1bxd_A ENVZ(290-450), protein 99.7 6.1E-17 2.1E-21 142.6 12.9 119 411-556 4-122 (161)
18 1r62_A Nitrogen regulation pro 99.7 1.5E-17 5E-22 146.3 7.4 129 411-556 2-132 (160)
19 3sl2_A Sensor histidine kinase 99.7 1.6E-16 5.3E-21 142.3 11.9 121 416-556 2-124 (177)
20 1i58_A Chemotaxis protein CHEA 99.6 4E-17 1.4E-21 147.9 3.8 123 414-556 2-161 (189)
21 3p01_A Two-component response 99.6 5.1E-14 1.8E-18 126.6 15.3 172 125-312 11-182 (184)
22 3ehg_A Sensor kinase (YOCF pro 99.5 2.4E-14 8.1E-19 120.5 7.8 99 417-556 2-100 (128)
23 3e0y_A Conserved domain protei 99.5 1.5E-13 5.1E-18 122.8 10.6 170 135-318 6-175 (181)
24 3trc_A Phosphoenolpyruvate-pro 99.5 9.4E-13 3.2E-17 116.4 15.3 164 140-317 4-169 (171)
25 2e4s_A CAMP and CAMP-inhibited 99.4 4.5E-13 1.5E-17 120.7 12.2 171 135-319 4-186 (189)
26 3k2n_A Sigma-54-dependent tran 99.4 8.8E-13 3E-17 117.5 12.3 164 140-318 2-175 (177)
27 2zmf_A CAMP and CAMP-inhibited 99.4 1.2E-12 4E-17 117.8 12.9 165 140-318 9-185 (189)
28 4glq_A Methyl-accepting chemot 99.4 2.7E-12 9.2E-17 113.3 11.5 155 149-317 2-162 (171)
29 3zxo_A Redox sensor histidine 99.4 5.9E-13 2E-17 112.0 6.9 98 414-556 2-99 (129)
30 3ci6_A Phosphoenolpyruvate-pro 99.4 1E-11 3.5E-16 109.3 14.6 164 138-315 4-169 (171)
31 3o5y_A Sensor protein; GAF dom 99.4 3.4E-12 1.2E-16 111.9 10.8 154 156-325 3-159 (165)
32 1th8_A Anti-sigma F factor; SP 99.3 1.5E-12 5E-17 112.1 6.3 77 455-556 35-115 (145)
33 3oov_A Methyl-accepting chemot 99.3 4.8E-11 1.6E-15 105.0 15.4 158 144-315 2-168 (169)
34 2lb5_A Sensor histidine kinase 99.3 1.2E-11 4.1E-16 113.4 9.7 169 133-315 5-203 (208)
35 3zxq_A Hypoxia sensor histidin 99.2 8.1E-12 2.8E-16 104.2 7.0 94 418-556 2-95 (124)
36 2vjw_A GAF-B, GAF family prote 99.2 1.6E-10 5.4E-15 99.6 12.9 134 158-316 1-141 (149)
37 1ykd_A Adenylate cyclase; GAF 99.2 2.9E-10 9.9E-15 115.3 16.5 171 136-319 191-386 (398)
38 3dba_A CONE CGMP-specific 3',5 99.1 7.3E-11 2.5E-15 105.4 8.4 153 141-307 4-171 (180)
39 2zbk_B Type 2 DNA topoisomeras 99.1 2E-11 6.8E-16 125.6 5.0 83 456-555 28-116 (530)
40 1mu5_A Type II DNA topoisomera 99.1 2.1E-11 7.1E-16 124.1 5.0 86 453-555 26-117 (471)
41 2qyb_A Membrane protein, putat 99.1 2E-10 6.9E-15 102.4 10.9 158 144-316 3-165 (181)
42 3ibj_A CGMP-dependent 3',5'-cy 99.1 8E-10 2.7E-14 120.0 17.6 169 139-323 176-351 (691)
43 3mmh_A FRMSR, methionine-R-sul 99.1 2.3E-09 7.9E-14 93.4 16.9 146 142-307 15-160 (167)
44 1mc0_A 3',5'-cyclic nucleotide 99.1 1.7E-09 5.8E-14 108.3 18.0 165 138-318 175-346 (368)
45 1mc0_A 3',5'-cyclic nucleotide 99.1 1.5E-09 5.3E-14 108.6 16.9 160 143-318 13-175 (368)
46 2w3g_A DOSS, two component sen 99.1 3.4E-10 1.2E-14 97.6 10.3 146 155-316 3-152 (153)
47 3hcy_A Putative two-component 99.1 2.6E-10 9E-15 98.4 7.9 144 156-315 1-145 (151)
48 1ykd_A Adenylate cyclase; GAF 99.0 1.3E-08 4.4E-13 103.1 19.9 166 140-319 5-194 (398)
49 1vhm_A Protein YEBR; structura 99.0 7.6E-09 2.6E-13 92.5 15.5 151 140-312 25-176 (195)
50 3cit_A Sensor histidine kinase 99.0 1.1E-08 3.6E-13 86.4 14.3 147 138-319 9-157 (160)
51 3ibj_A CGMP-dependent 3',5'-cy 99.0 6.6E-09 2.2E-13 112.9 16.0 160 141-317 12-174 (691)
52 2q2e_B Type 2 DNA topoisomeras 98.9 1.7E-10 5.7E-15 120.4 1.4 84 453-555 31-121 (621)
53 2k2n_A Sensor protein, SYB-CPH 98.9 1.2E-08 4E-13 90.2 11.7 141 159-313 1-171 (172)
54 2ool_A Sensor protein; bacteri 98.9 2.8E-08 9.5E-13 96.1 14.2 160 141-314 144-332 (337)
55 3nhq_A Bacteriophytochrome; ph 98.8 1.5E-07 5.3E-12 95.8 18.6 161 141-315 122-311 (505)
56 4e04_A Bacteriophytochrome (li 98.8 6.8E-08 2.3E-12 92.3 14.8 154 142-309 132-314 (327)
57 1f5m_A GAF; CGMP binding, sign 98.8 1.2E-07 4.2E-12 83.9 14.8 145 144-307 27-177 (180)
58 3zq5_A Phytochrome-like protei 98.8 2.2E-07 7.4E-12 95.0 18.3 161 142-316 136-325 (520)
59 3s7o_A Bacteriophytochrome; bi 98.8 6.9E-08 2.4E-12 92.5 13.6 155 142-310 150-333 (343)
60 3rfb_A Putative uncharacterize 98.8 1E-07 3.5E-12 82.6 13.1 142 144-307 18-160 (171)
61 3ksh_A Putative uncharacterize 98.7 1.6E-07 5.6E-12 80.5 13.2 141 145-307 18-159 (160)
62 3eea_A GAF domain/HD domain pr 98.6 1.2E-07 4.3E-12 75.3 8.0 148 153-315 8-162 (162)
63 3bjc_A CGMP-specific 3',5'-cyc 98.5 1.1E-08 3.8E-13 113.7 0.0 171 137-320 146-330 (878)
64 1b63_A MUTL; DNA mismatch repa 98.5 7.8E-08 2.7E-12 93.8 5.9 74 459-554 24-104 (333)
65 3bjc_A CGMP-specific 3',5'-cyc 98.5 1.8E-08 6.3E-13 112.0 0.0 173 136-322 326-521 (878)
66 3na3_A DNA mismatch repair pro 98.4 1.9E-07 6.6E-12 90.5 6.1 61 459-541 28-88 (348)
67 1ixm_A SPO0B, protein (sporula 98.4 2.3E-06 7.8E-11 75.9 12.4 143 346-536 23-171 (192)
68 1h7s_A PMS1 protein homolog 2; 98.4 9.2E-08 3.1E-12 94.1 3.7 73 459-553 34-113 (365)
69 4eho_A Bacteriophytochrome, PA 98.4 7.6E-06 2.6E-10 87.4 16.9 160 145-318 133-321 (635)
70 1kij_A DNA gyrase subunit B; t 98.3 6.8E-07 2.3E-11 88.7 5.8 78 454-555 31-121 (390)
71 3h4l_A DNA mismatch repair pro 98.2 1.5E-06 5.2E-11 85.0 5.3 60 459-540 25-84 (367)
72 3zcc_A HAMP, osmolarity sensor 98.1 1.8E-05 6.1E-10 63.8 10.7 66 333-403 49-114 (114)
73 3ke6_A Protein RV1364C/MT1410; 97.9 9.3E-06 3.2E-10 81.6 5.6 66 456-556 294-363 (399)
74 3zrx_A AF1503 protein, osmolar 97.6 0.00031 1.1E-08 56.3 9.6 61 339-404 55-115 (115)
75 2wer_A ATP-dependent molecular 97.5 2.3E-05 7.9E-10 71.5 1.0 54 462-535 29-97 (220)
76 2w1r_A Spovt, stage V sporulat 97.5 0.0003 1E-08 57.4 7.5 119 162-308 3-122 (123)
77 1s16_A Topoisomerase IV subuni 97.4 9.7E-05 3.3E-09 73.1 4.9 43 512-554 64-119 (390)
78 2ior_A Chaperone protein HTPG; 97.3 3.3E-05 1.1E-09 71.1 -0.3 54 462-535 50-118 (235)
79 1ei1_A DNA gyrase B, GYRB; ATP 97.3 0.00023 7.8E-09 70.4 5.2 73 459-554 34-122 (391)
80 1yc1_A HSP 86, heat shock prot 97.1 0.00011 3.7E-09 68.5 1.3 54 462-535 71-139 (264)
81 3fv5_A DNA topoisomerase 4 sub 96.9 0.00099 3.4E-08 59.4 5.0 44 461-527 19-65 (201)
82 2gqp_A Endoplasmin; GRP94, HSP 96.7 0.00049 1.7E-08 63.2 1.9 23 512-534 80-102 (236)
83 3t0h_A Heat shock protein HSP 96.7 0.00026 8.8E-09 64.3 -0.3 22 512-533 80-101 (228)
84 4emv_A DNA topoisomerase IV, B 96.6 0.0014 4.6E-08 59.4 3.9 56 456-532 37-100 (226)
85 1zxm_A TOPO IIA ATPase, DNA to 96.6 0.0025 8.6E-08 63.0 6.0 48 457-526 50-101 (400)
86 3cwv_A DNA gyrase, B subunit, 96.5 0.001 3.6E-08 65.2 2.8 50 456-531 27-79 (369)
87 4duh_A DNA gyrase subunit B; s 96.5 0.0022 7.4E-08 57.9 4.6 47 458-527 34-83 (220)
88 3ttz_A DNA gyrase subunit B; p 96.5 0.003 1E-07 56.0 5.4 48 456-526 28-78 (198)
89 1qy5_A Endoplasmin; GRP94, NEC 96.3 0.0014 4.9E-08 61.0 2.2 51 463-533 32-97 (269)
90 3peh_A Endoplasmin homolog; st 96.3 0.0019 6.4E-08 60.0 2.9 18 512-529 94-111 (281)
91 1pvg_A DNA topoisomerase II; G 96.2 0.0066 2.2E-07 60.3 6.4 50 458-529 63-116 (418)
92 1y4s_A Chaperone protein HTPG; 96.1 0.0028 9.7E-08 65.3 3.7 52 462-533 30-96 (559)
93 4eu0_A PELD; C-DI-GMP, signali 95.8 0.053 1.8E-06 51.0 10.7 132 159-313 24-156 (298)
94 2cg9_A ATP-dependent molecular 95.7 0.0055 1.9E-07 64.4 3.8 20 512-531 74-93 (677)
95 3o0i_A HSP90AA1 protein; HSP90 95.5 0.0035 1.2E-07 57.6 1.2 20 512-531 108-127 (256)
96 2o1u_A Endoplasmin; GRP94, HSP 95.1 0.0096 3.3E-07 62.5 3.2 50 462-531 48-112 (666)
97 3lnu_A Topoisomerase IV subuni 94.9 0.018 6.1E-07 56.8 4.3 44 461-527 52-98 (408)
98 3nmq_A Heat shock protein HSP 94.7 0.0081 2.8E-07 54.5 1.2 18 511-528 86-103 (239)
99 3e98_A GAF domain of unknown f 94.3 0.77 2.6E-05 42.1 13.4 160 123-308 78-242 (252)
100 2ioq_A Chaperone protein HTPG; 94.2 0.024 8.3E-07 59.2 3.4 51 462-532 30-95 (624)
101 3ied_A Heat shock protein; HSP 93.4 0.016 5.5E-07 52.6 0.3 20 512-531 131-150 (272)
102 4gfh_A DNA topoisomerase 2; to 91.5 0.15 5.2E-06 57.3 5.1 47 459-527 59-109 (1177)
103 4a2l_A BT_4663, two-component 86.4 0.27 9.2E-06 53.9 2.4 71 219-291 695-772 (795)
104 3ott_A Two-component system se 86.2 0.3 1E-05 53.2 2.6 71 220-292 661-739 (758)
105 3v9f_A Two-component system se 79.7 0.66 2.3E-05 50.6 2.1 68 222-291 691-766 (781)
106 3nhq_A Bacteriophytochrome; ph 70.0 7.5 0.00025 39.5 6.7 50 136-185 312-361 (505)
107 3zq5_A Phytochrome-like protei 44.8 65 0.0022 32.7 8.5 49 137-185 326-374 (520)
108 3szt_A QCSR, quorum-sensing co 40.2 2E+02 0.0067 25.5 12.9 140 149-304 8-153 (237)
109 2ks1_B Epidermal growth factor 34.1 64 0.0022 20.2 4.0 10 5-14 2-11 (44)
110 2gx5_A GTP-sensing transcripti 32.9 2.2E+02 0.0075 23.9 11.7 40 268-308 126-165 (170)
111 2jwa_A Receptor tyrosine-prote 31.2 67 0.0023 20.2 3.7 25 23-47 14-39 (44)
112 3ehh_A Sensor kinase (YOCF pro 23.8 3.3E+02 0.011 23.0 10.8 14 345-358 33-46 (218)
113 2lq0_A De novo designed antifr 22.1 64 0.0022 16.7 2.0 14 57-70 8-21 (26)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.97 E-value=6.6e-30 Score=244.83 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccc
Q 008718 337 AEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELD 413 (556)
Q Consensus 337 ~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~ 413 (556)
+++..+.+.+|++.++|||||||++|.++++.+... ...+..+++++.+.+.++++..++++++++++++.+...+.
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence 344556678899999999999999999999998754 23345678899999999999999999999999988888888
Q ss_pred ccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCC
Q 008718 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKP 489 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~ 489 (556)
.+++++.+++++++..+......+++.+.++.+...+..+.+|+..+.+++.||+.||+||++++ .+.+.....++
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence 88999999999999999998888999998877644455567799999999999999999999754 23333333222
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++.++++|+|||+.+...+ ...|+||||++||+
T Consensus 173 --------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~ 220 (258)
T 2c2a_A 173 --------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE 220 (258)
T ss_dssp --------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHH
T ss_pred --------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHH
Confidence 399999999999999999999999998775533 23599999999984
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.96 E-value=1.1e-27 Score=230.85 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008718 328 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (556)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~ 406 (556)
.+++...+++++.++.+.+|++.++||+||||+.|.++++.+... ..+++.+++++.+.+..+++..++++++++++.+
T Consensus 24 ~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~ 103 (268)
T 4ew8_A 24 SALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQID 103 (268)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455555666678999999999999999999999999875 4577788999999999999999999999999999
Q ss_pred CCCccccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEe
Q 008718 407 DGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIAS 485 (556)
Q Consensus 407 ~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g-~~~i~~~ 485 (556)
.+...+...++++.+++++++..+......+++.+.+++++..+ .+.+|+..+.+|+.||+.||+||++++ .+.+...
T Consensus 104 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~ 182 (268)
T 4ew8_A 104 AGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSAR 182 (268)
T ss_dssp TTCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred cCCcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 88888888999999999999999999888899999998876654 466799999999999999999999874 4444443
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. .++ .+.|+|.|||+|||++..+++|+||++++. .|+|+||++||+
T Consensus 183 ~-~~~-------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~ 228 (268)
T 4ew8_A 183 R-ALG-------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKA 228 (268)
T ss_dssp E-CSS-------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHH
T ss_pred e-cCC-------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHHH
Confidence 3 333 399999999999999999999999997553 489999999974
No 3
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.94 E-value=8.4e-26 Score=226.32 Aligned_cols=186 Identities=25% Similarity=0.341 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHH
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
+++++|++.++||++|||++|.++++.+.+... ++...++++.+.+.++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 346789999999999999999999999987643 3445788999999999999999999999993 334667799999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEeeeCCCCCCCCCCCC
Q 008718 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
++++++...+......+++.+.++.++..+ .+.+|+..+.+|+.||++||+||+++ |.+.+.....++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999888889999988876544 46779999999999999999999954 555555544333
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++.++++|+||++++. .|+|+||++||+
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~ 317 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRK 317 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHH
T ss_pred ----------EEEEEEEECCCCCChHHHhhcCCCCccCCC-----CCccchHHHHHH
Confidence 399999999999999999999999998753 489999999974
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.93 E-value=3.8e-26 Score=231.50 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccccee
Q 008718 340 AIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (556)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~ 418 (556)
.++...++++.++||++|||+.|. ++.+.+.....+++.+++++.+..+..++..++++++++++.+.+...+...+++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~ 196 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS 196 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCC
Confidence 345678899999999999999998 5555444434467788999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHHHHHhhhhcC---CceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC---------eEEEEEee
Q 008718 419 LQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIASV 486 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g---------~~~i~~~~ 486 (556)
+.++++++++.+...+..+ .+.+.+..+.+. .+..|+..|.+|+.||+.||+||+.++ .+.+.+..
T Consensus 197 l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~--~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~ 274 (388)
T 1gkz_A 197 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA--RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN 274 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC--CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC--ceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe
Confidence 9999999999999888766 344555544332 355699999999999999999999765 45554433
Q ss_pred eCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC---------------------CCC
Q 008718 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QTP 545 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~---------------------~~~ 545 (556)
.+ + ++.|+|+|||+|||++.+++||+|||+++.... ...
T Consensus 275 ~~-~-------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (388)
T 1gkz_A 275 ND-V-------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMH 334 (388)
T ss_dssp CS-S-------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCS
T ss_pred CC-C-------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcC
Confidence 32 2 499999999999999999999999999876431 125
Q ss_pred CcceeeecccC
Q 008718 546 RAGLGLAICRR 556 (556)
Q Consensus 546 G~GlGL~i~k~ 556 (556)
|+|+||++||+
T Consensus 335 G~GLGL~i~r~ 345 (388)
T 1gkz_A 335 GFGFGLPTSRA 345 (388)
T ss_dssp CSSCHHHHHHH
T ss_pred CccCCHHHHHH
Confidence 99999999974
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.93 E-value=6.8e-27 Score=218.43 Aligned_cols=187 Identities=24% Similarity=0.324 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+.+|++.++||+||||++|.++++.+.....+ +...++++.+.+.++++..++++++++++.+.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 35799999999999999999999988765433 33466778888999999999999999999988877888899999999
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCC
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
+++++..+......+++.+.+++++... .+.+|+..+.+|+.||++||+||+++++.+.+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~-~~~------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTL-NAD------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEE-CSS-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEE-ccC-------------
Confidence 9999999999998999999998876644 4667999999999999999999998765433322 211
Q ss_pred CCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.++|+|||+|||++.++++|+||++++.. ...|+|+||++||+
T Consensus 147 ---------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~ 189 (222)
T 3jz3_A 147 ---------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQR 189 (222)
T ss_dssp ---------EEEEECSCC----------------------------CTHHHHHH
T ss_pred ---------eEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHHH
Confidence 28899999999999999999999986532 23589999999974
No 6
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.92 E-value=3.4e-25 Score=210.06 Aligned_cols=186 Identities=19% Similarity=0.376 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeH
Q 008718 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
.+.+++|++.++||+||||+.|.++++.+.+...+ ++.+++++.+.+..+++..++++++++++.... ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 34467899999999999999999999999877554 456789999999999999999999999886543 4568999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCC
Q 008718 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
..++++++..+......+++.+.++.++ ..+.+|+..+.+++.||+.||+||+++++.+.+.....++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999888888888877643 3466799999999999999999999655443333333333
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++..+++|+||++++.. .|+|+||++||+
T Consensus 155 ----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i~~~ 197 (244)
T 3d36_A 155 ----------RVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMVVYR 197 (244)
T ss_dssp ----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHHHHH
T ss_pred ----------EEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHHHHH
Confidence 3999999999999999999999999987632 489999999974
No 7
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.92 E-value=3.7e-25 Score=224.55 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHhhhhcC-CCcccc
Q 008718 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (556)
Q Consensus 346 ~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~l~~~~~~~~-~~~~l~ 413 (556)
++++.++||||| ||+.|.++++++.....++. .+++++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 367778899999 99999999999876544433 344677 477888888 9999999999876 455666
Q ss_pred c----cceeHHHHHHHHHHHHHhhhhc-----CCceEEEEe--CCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 008718 414 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (556)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~--- 479 (556)
. .++++.++++++++.+...+.. +++.+.+.. .+..+..+.+|+..|.+|+.||+.||+||+++++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8999999999999999988875 888887644 1233445778999999999999999999997665
Q ss_pred -----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCC------CCCCCCcc
Q 008718 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 548 (556)
Q Consensus 480 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~~~~~G~G 548 (556)
+.+.+...++ ++.|+|+|+|+|||++.+++||+|||+++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 5555443322 4999999999999999999999999998764 22235999
Q ss_pred eeeecccC
Q 008718 549 LGLAICRR 556 (556)
Q Consensus 549 lGL~i~k~ 556 (556)
+||+|||+
T Consensus 315 LGL~i~~~ 322 (394)
T 2btz_A 315 YGLPISRL 322 (394)
T ss_dssp CHHHHHHH
T ss_pred CCHHHHHH
Confidence 99999973
No 8
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.92 E-value=1.3e-24 Score=220.36 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-hhhhcCCCcccc
Q 008718 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (556)
Q Consensus 346 ~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~l~~-~~~~~~~~~~l~ 413 (556)
+++..++||||| ||+.|.++++++.... ..++.+++++ .+.+.+.++ +++++++ +++. .+...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356667899999 8999999999776432 3455678888 688899999 9999998 6665 4555566
Q ss_pred c----cceeHHHHHHHHHHHHHhhhhcC-----CceEEEEe--CCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 008718 414 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (556)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~--- 479 (556)
. .++++.++++++++.+...+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||+++++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 79999999999999999888777 88777754 2233445778999999999999999999997654
Q ss_pred -----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCC------CC-CCCCc
Q 008718 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 547 (556)
Q Consensus 480 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~~-~~~G~ 547 (556)
+.+.+...++ .+.|+|+|+|+|||++.+++||+|||+++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCc
Confidence 5555543322 4999999999999999999999999998764 22 23599
Q ss_pred ceeeecccC
Q 008718 548 GLGLAICRR 556 (556)
Q Consensus 548 GlGL~i~k~ 556 (556)
|+||+|||+
T Consensus 314 GLGL~i~~~ 322 (394)
T 2e0a_A 314 GYGLPISRL 322 (394)
T ss_dssp SCHHHHHHH
T ss_pred ccCHHHHHH
Confidence 999999974
No 9
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.92 E-value=1.4e-24 Score=221.16 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhcC----C
Q 008718 344 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 408 (556)
Q Consensus 344 ~~~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~l~~~~~~~~----~ 408 (556)
+..|++.+ ||||| ||+.|.++++++.....+ ++.+++++. +.+...++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 34566665 99999 999999999977654333 334667777 77778888 9999999999864 2
Q ss_pred ---CccccccceeHHHHHHHHHHHHHhhhhcC-----CceEEEEe--CCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC
Q 008718 409 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (556)
Q Consensus 409 ---~~~l~~~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g 478 (556)
.......++++.++++++++.+...+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||++++
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567789999999999999999888766 88888766 123344577899999999999999999999765
Q ss_pred e--------EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCC-------CCC
Q 008718 479 Y--------VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS-------SCQ 543 (556)
Q Consensus 479 ~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~-------~~~ 543 (556)
+ +.+.+....+ .+.|+|+|||+|||++.+++||+|||+++.. ...
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCC--------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 4 5555443322 4999999999999999999999999998764 122
Q ss_pred CCCcceeeecccC
Q 008718 544 TPRAGLGLAICRR 556 (556)
Q Consensus 544 ~~G~GlGL~i~k~ 556 (556)
..|+|+||+|||+
T Consensus 323 ~~G~GLGL~Ivr~ 335 (407)
T 2q8g_A 323 LAGFGYGLPISRL 335 (407)
T ss_dssp SSCTTCHHHHHHH
T ss_pred CCCcCCCHHHHHH
Confidence 3599999999974
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.91 E-value=5.5e-24 Score=201.50 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHHH
Q 008718 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
+++.|||||||||++|.++++++.+...++..+++++.|.+..+++..+++. +++..+. .....++++.++.+.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~~----~r~~~~~-~~~~~~~~~~~l~~~- 122 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQF----TRVAFGA-SASAENFDSRELEKL- 122 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CSSCCCEEHHHHHHH-
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH----HHHhhcc-ccccccccHHHHHHH-
Confidence 7788999999999999999999998877777888899999999888877653 3332222 334457777665433
Q ss_pred HHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCC
Q 008718 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTD 506 (556)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 506 (556)
+....+.+++.+..+.++. . ++..+.|++.||+.||+||++.|+.+.+.....++
T Consensus 123 ---~~~~~~~~~i~l~~~~~~~----~--~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~---------------- 177 (247)
T 4fpp_A 123 ---AQGVFAHVRPTLDWQIEPQ----A--MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG---------------- 177 (247)
T ss_dssp ---HHHHHTTSSSEEEECCCSC----E--ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT----------------
T ss_pred ---HHHHHHhhhhhccccccch----h--hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC----------------
Confidence 3344445677776644322 1 34678899999999999999876544333333333
Q ss_pred CceEEEEEEEEcCCC--CCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 507 GHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 507 ~~~~v~i~V~DnG~G--i~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|.|+|+|+| ||++..+++|++|++++ ..|+||||+|||+
T Consensus 178 ---~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-----~~G~GLGLai~~~ 221 (247)
T 4fpp_A 178 ---RFSIIADAKGPRARLRPEVLAGLKGEPLAEG-----LGGPWVQAAYLNA 221 (247)
T ss_dssp ---EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----CHHHHHHHHHHHH
T ss_pred ---EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----CCCccHHHHHHHH
Confidence 389999999988 66777788888887654 2489999999984
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.90 E-value=1.1e-23 Score=215.25 Aligned_cols=190 Identities=18% Similarity=0.235 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHhHHH-----HHHHHHHHHhcCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhc-CCCcc
Q 008718 344 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDLT----PEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 411 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~-----~I~~~~~~l~~~~~~----~~~~~~l~~i~~~--~~~l~~li~~l~~~~~~~-~~~~~ 411 (556)
+.+|++ ++|||||||+ .|.|+++++.....+ ++.+++++.+... ..++ ++++++...+.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345665 5599999999 789999977653222 3456677776555 6777 899987665542 22222
Q ss_pred c----cccceeHHHHHHHHHHHHHhhhhc-----CCceEEEEeC--CCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe-
Q 008718 412 L----DNGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (556)
Q Consensus 412 l----~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~- 479 (556)
. ..+++++.++++++++.++..+.. +++.+.+... +..+..+.+|+..|.+|+.||+.||+||+++++
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 237899999999999999888765 6777776432 233445778999999999999999999997643
Q ss_pred --------EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCC------C-CCC
Q 008718 480 --------VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQT 544 (556)
Q Consensus 480 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~-~~~ 544 (556)
+.+.+...++ .+.|+|+|||+|||++.+++||+|||+++.. . ...
T Consensus 275 ~~~~~~~~I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE--------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeCCC--------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 5554433322 4999999999999999999999999998764 1 223
Q ss_pred CCcceeeecccC
Q 008718 545 PRAGLGLAICRR 556 (556)
Q Consensus 545 ~G~GlGL~i~k~ 556 (556)
.|+||||+|||+
T Consensus 335 ~G~GLGL~I~k~ 346 (419)
T 1y8o_A 335 AGFGYGLPISRL 346 (419)
T ss_dssp --CTTHHHHHHH
T ss_pred CCeecCHHHHHH
Confidence 599999999974
No 12
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.83 E-value=7.4e-20 Score=170.05 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeH
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
+++.++++.++|++++||+.+.+.++.+... ..++...+.++.+.+.++++...++++.... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4467899999999999999999999887753 2334456677777777777766666665332 25677
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCC
Q 008718 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
.+.++.+...+. ..++.+.++.+...+.....+...+.+++.|+++||+||++++.+.+.....++
T Consensus 95 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---------- 160 (218)
T 3ehh_A 95 KDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---------- 160 (218)
T ss_dssp HHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----------
T ss_pred HHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC----------
Confidence 787777776664 467888877765554444557788999999999999999988777666655443
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.. .|+|+||++||+
T Consensus 161 ----------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~ 190 (218)
T 3ehh_A 161 ----------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRE 190 (218)
T ss_dssp ----------EEEEEEEESSCCCC-------------------------CHHHHHHH
T ss_pred ----------EEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHHH
Confidence 399999999999999864 378999999873
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.82 E-value=2.1e-20 Score=187.86 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHH
Q 008718 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
++.+++.+++||+++|++.+.+..+.+.. +.+.+..+++..+++++++++. ....+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 35678889999999999999877654432 4578888999999999998864 2236778899
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHH---HHHHHHHHHHHHhhcC------------CC-CeEEEEEee
Q 008718 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR---LMQTILNIVGNAVKFT------------KE-GYVSIIASV 486 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~---l~~il~nLl~NAik~~------------~~-g~~~i~~~~ 486 (556)
++.+...++......+..+++.+++... ..|+.. +.+++.||+.||+||+ ++ |.+.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCe---eecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 9999999988888777777777765432 236754 5555999999999997 33 444444433
Q ss_pred eCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhccCcccCCCCC
Q 008718 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQSRGSSC 542 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~------------------------~~iF~~f~~~~~~~~ 542 (556)
..+ ++.|+|+|||+|||++.+ ++||+|||+++...+
T Consensus 147 ~~~--------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~ 206 (379)
T 1b3q_A 147 EGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS 206 (379)
T ss_dssp ETT--------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------
T ss_pred eCC--------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC
Confidence 332 399999999999999976 889999999887766
Q ss_pred CCCCcceeeecccC
Q 008718 543 QTPRAGLGLAICRR 556 (556)
Q Consensus 543 ~~~G~GlGL~i~k~ 556 (556)
...|+|+||++||+
T Consensus 207 ~~~G~GlGL~iv~~ 220 (379)
T 1b3q_A 207 EVSGRGVGMDVVKN 220 (379)
T ss_dssp -----CCCSHHHHH
T ss_pred CCCCccccHHHHHH
Confidence 66799999999974
No 14
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.74 E-value=8.3e-18 Score=146.52 Aligned_cols=118 Identities=29% Similarity=0.421 Sum_probs=97.4
Q ss_pred cccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEeeeCCCC
Q 008718 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPES 491 (556)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~-g~~~i~~~~~~~~~ 491 (556)
+.+++++.+++++++..+...+..+++.+.+++++.. ..+.+|+..+.+++.||+.||+||+++ +.+.+.... .++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~-~~~- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYT- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE-CSS-
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEe-cCC-
Confidence 4568999999999999999999999999999886553 346779999999999999999999965 444444433 222
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+||+++..+++|+||++++. .|+|+||++||+
T Consensus 79 ------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~~ 120 (152)
T 3a0y_A 79 ------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRK 120 (152)
T ss_dssp ------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHHH
T ss_pred ------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHHH
Confidence 499999999999999999999999997652 489999999873
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.74 E-value=1.2e-17 Score=145.45 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=98.4
Q ss_pred cceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCC
Q 008718 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (556)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~ 494 (556)
+++++.++++++++.+...+..+++.+.+++++.. .+.+|+..+.+++.||++||+||+++ .+.+.....++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~----- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC-----
Confidence 47999999999999999999999999999876553 36789999999999999999999986 55554443332
Q ss_pred CCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++.++++|+||++++... .|+|+||++||+
T Consensus 74 ---------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~~ 117 (152)
T 1id0_A 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVARE 117 (152)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHHH
T ss_pred ---------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHHH
Confidence 29999999999999999999999999876543 589999999874
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.72 E-value=1.5e-17 Score=144.57 Aligned_cols=118 Identities=23% Similarity=0.387 Sum_probs=88.2
Q ss_pred cccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCC
Q 008718 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL 492 (556)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~ 492 (556)
+.+++++.++++++++.+.... +++.+.++.+ .+..+.+|+..+.+++.||++||+||++++.+.+.....++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~--- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---
Confidence 4568999999999999988765 4556665543 34457789999999999999999999988865555544433
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+||+++..+++|+||++.... ...|+|+||++||+
T Consensus 77 -----------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~ 121 (150)
T 1ysr_A 77 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVAQ 121 (150)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHH
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHHH
Confidence 3999999999999999999999999976433 24589999999974
No 17
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.71 E-value=6.1e-17 Score=142.56 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=95.4
Q ss_pred cccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCC
Q 008718 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~ 490 (556)
+++.+++++.++++++++.+.. .+..+.+++.... ..+.+|+..+.+++.||+.||+||+ .+.+.+.....++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~- 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS-IEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC-CCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC-ceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCC-
Confidence 4567799999999999998653 4555666654443 3467799999999999999999999 6667666655443
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+||+++.++++|+||++++... ...|+|+||++||+
T Consensus 77 -------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-~~~g~GlGL~i~~~ 122 (161)
T 1bxd_A 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQR 122 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHH
T ss_pred -------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-CCCCcccCHHHHHH
Confidence 39999999999999999999999999876543 23689999999974
No 18
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.70 E-value=1.5e-17 Score=146.30 Aligned_cols=129 Identities=25% Similarity=0.321 Sum_probs=80.4
Q ss_pred cccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCC--CCeEEEEEeeeC
Q 008718 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAK 488 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~--~g~~~i~~~~~~ 488 (556)
+++.+++++.++++++++.+... ..+++.+.+++++..+. +.+|+..+.+++.||++||+||++ .+.+.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 35567899999999999999887 67888898888766554 667999999999999999999997 444444444332
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
... ........++.|+|+|||+||+++.++++|+||++++. .|+|+||++||+
T Consensus 80 ~~~----------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~g~GlGL~i~~~ 132 (160)
T 1r62_A 80 QLT----------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARN 132 (160)
T ss_dssp EEE----------ETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHH
T ss_pred ccc----------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----CCCccCHHHHHH
Confidence 200 00001112489999999999999999999999998653 489999999974
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.68 E-value=1.6e-16 Score=142.31 Aligned_cols=121 Identities=24% Similarity=0.406 Sum_probs=94.2
Q ss_pred ceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEeeeCCCCCCC
Q 008718 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSD 494 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~ 494 (556)
++++.++++++++.+... ..+++.+.++++... ..+.+|+..|.+++.||+.||+||+++ +.+.+.+.....++
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD-LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC-CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC-cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999988 788889998876543 357789999999999999999999966 44445443333322
Q ss_pred CCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++.++++|++|++.+.... ...|+|+||++||+
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~ 124 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKE 124 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHH
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHH
Confidence 499999999999999999999999998655432 33589999999873
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.65 E-value=4e-17 Score=147.89 Aligned_cols=123 Identities=15% Similarity=0.281 Sum_probs=92.9
Q ss_pred ccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcC------------CC-CeE
Q 008718 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT------------KE-GYV 480 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~------------~~-g~~ 480 (556)
.+++++.++++++...+......+++.+.++++.........+...+.+++.||++||+||+ ++ +.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999988888888887655432222334556666999999999997 33 334
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhccCcc
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQ 536 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~------------------------~~iF~~f~~ 536 (556)
.+.+... ++ ++.|+|+|||+||+++.+ +++|+|||+
T Consensus 82 ~I~~~~~-~~-------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~ 141 (189)
T 1i58_A 82 ILSARHE-GN-------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS 141 (189)
T ss_dssp EEEEEEE-TT-------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCS
T ss_pred EEEEEec-CC-------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccc
Confidence 4444333 22 499999999999999976 899999998
Q ss_pred cCCCCCCCCCcceeeecccC
Q 008718 537 SRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 537 ~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.......|+|+||++||+
T Consensus 142 ~~~~~~~~~g~GlGL~iv~~ 161 (189)
T 1i58_A 142 TKEKVSEVSGRGVGMDVVKN 161 (189)
T ss_dssp HHHHHHGGGTCCCHHHHHHH
T ss_pred ccccCCCCCCCccCHHHHHH
Confidence 76543333589999999873
No 21
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.56 E-value=5.1e-14 Score=126.65 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccC
Q 008718 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (556)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 204 (556)
...++++..++++++++++..++++++.+.+++|++++++.+++.+.+.+++++|+|++++++ ......+.+.......
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCccC
Confidence 456677888888999999999999999999999999999999999999999999999999543 3333333233222222
Q ss_pred cccccCChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC
Q 008718 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~ 284 (556)
..++ ..+.+..++.++++..+++...++.+.........+.++.+++| +..++..+|++.+++..
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIP--------------ITYRNEMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEE--------------EEECCEEEEEEEeCcCC
Confidence 2244 37788999999999999988777655421111112567888999 55677789999998888
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHH
Q 008718 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (556)
Q Consensus 285 ~~~~~~~e~~ll~~la~~~~~al~~a~~ 312 (556)
++.|+++|.+++..+|++++++++|++.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998863
No 22
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.51 E-value=2.4e-14 Score=120.53 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=74.7
Q ss_pred eeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCC
Q 008718 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~ 496 (556)
+++.+.++.+...++ ..++.+.++.+...+.....+...+.++++|+++||+||++++.+.+.....++
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~------- 70 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK------- 70 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT-------
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC-------
Confidence 455566666555554 577888877665444444557888999999999999999988777766655443
Q ss_pred CCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|+|||+|||++.. .|+|+||++||+
T Consensus 71 -------------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~ 100 (128)
T 3ehg_A 71 -------------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRE 100 (128)
T ss_dssp -------------EEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHHH
T ss_pred -------------EEEEEEEECCcCcCcccC-----------------CCCCccHHHHHH
Confidence 399999999999998864 378999999873
No 23
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.47 E-value=1.5e-13 Score=122.78 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=130.5
Q ss_pred HhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhH
Q 008718 135 LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (556)
.++++++++..+.++++.+.+..+.+++++.+++.+.+.+++++|+|+++|+++..+...+++.........++...+.+
T Consensus 6 ~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 85 (181)
T 3e0y_A 6 RANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGIT 85 (181)
T ss_dssp -----CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCee
Confidence 34556667888999999999999999999999999999999999999999987764444455444444444677778889
Q ss_pred HHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHH
Q 008718 215 TDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELE 294 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ 294 (556)
..++.++++..+++......+.........+.++.+++| +..++..+|++.+.+..++.|++.+.+
T Consensus 86 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~~ 151 (181)
T 3e0y_A 86 GSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFP--------------IGDKKEVYGVINLNTTSIRSFHEDEIY 151 (181)
T ss_dssp HHHHHHCCCEEEEEECCCCCC---------CEEEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHHH
T ss_pred eehhhcCCeEEecCcccCccccccccccccCcceEEEEE--------------EEeCCeEEEEEEEeeCCCCCCCHHHHH
Confidence 999999999999887766554322222234567888889 555677899999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 295 LIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 295 ll~~la~~~~~al~~a~~~~~~~~ 318 (556)
++..+|.+++.++++++++++.++
T Consensus 152 ~l~~la~~~a~al~~~~~~~~~~~ 175 (181)
T 3e0y_A 152 FVSIIANLILTAIKLRQQVASSRK 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887765443
No 24
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.47 E-value=9.4e-13 Score=116.38 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=133.5
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc--cccCcccccCChhHHHh
Q 008718 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTDV 217 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 217 (556)
.+.+..+.++++.+.+..+.+++++.+++.+.+.+++++|+||++|+++..+......+.. ......++...+.+..+
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 3467889999999999999999999999999999999999999999887766665544322 22233567788899999
Q ss_pred hcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008718 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (556)
+.++++..+++...+..+.........+.++.+++| +..++..+|++.+.+..++.|++++.+++.
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIP--------------IIEQGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEE--------------EEETTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEe--------------EEECCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 999999999987776655432222345667888899 556677899999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008718 298 VVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 298 ~la~~~~~al~~a~~~~~~~ 317 (556)
.+|++++.++++++++++.+
T Consensus 150 ~la~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 25
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.45 E-value=4.5e-13 Score=120.74 Aligned_cols=171 Identities=11% Similarity=0.088 Sum_probs=130.4
Q ss_pred HhhhHHHHhHHHHHHHHHHHcc-CChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEE-eecc--------ccccC
Q 008718 135 LILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 204 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~-l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~--------~~~~~ 204 (556)
.++++.++.+.+.++++.+.++ ++++++++.+++.+.+.+++++|+|+++|+++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 3456677888899999999877 599999999999999999999999999998776665432 1111 11334
Q ss_pred cccccCChhHHHhhcccCceEecCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC
Q 008718 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (556)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~ 283 (556)
..++...+.++.++.+++++.+++...+..+... ......+.++.+++| +..++.++|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEE--------------eccCCeEEEEEEEEeC
Confidence 4567788999999999999999987766554321 111124556778889 5567788999999887
Q ss_pred CCC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 284 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 284 ~~~-~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~ 319 (556)
.++ .|++++.+++..+|.+++++|+|++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 999999999999999999999999998876554
No 26
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.43 E-value=8.8e-13 Score=117.46 Aligned_cols=164 Identities=12% Similarity=0.092 Sum_probs=126.8
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEE-Eeeccc---cccCcccccCChhHH
Q 008718 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQ---IQIGSSVPINLPIVT 215 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 215 (556)
+..++.+.++++.+.++++++++++.+++.+.+.+++++|+|+++|+++..+... ..+... ......++...+.+.
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 4567889999999999999999999999999999999999999999887776542 111111 122334566778889
Q ss_pred HhhcccCceEecCCCc-hhhhhhc-----ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccc
Q 008718 216 DVFNSAQAMRLPYNCP-LARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR 289 (556)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~ 289 (556)
.++.++++.++ +... ...+... ......+.++.+++| +..++..+|++.+.+..++.|+
T Consensus 82 ~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~iGvL~l~~~~~~~f~ 146 (177)
T 3k2n_A 82 GHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSP--------------LRSGGRVIGFLSFVSAEEKLWS 146 (177)
T ss_dssp GGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCC
T ss_pred HHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEE--------------EEECCEEEEEEEEEECCCCCCC
Confidence 99999999988 4433 3322211 001123456778888 5666788999999998888999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 290 DHELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 290 ~~e~~ll~~la~~~~~al~~a~~~~~~~~ 318 (556)
+++.+++..+|++++++++|+++|++.++
T Consensus 147 ~~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 147 DGDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
No 27
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=117.85 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=124.5
Q ss_pred HHHhHHHHHHHHH-HHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc---------cccCccccc
Q 008718 140 EETGRHVRMLTHE-IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPI 209 (556)
Q Consensus 140 ~~~~~~l~~~~~~-l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (556)
.+..+.|.++++. +.+.+|++++++.+++.+.+.+++++|+||++|+++..+......... ......+|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 3345567888887 577789999999999999999999999999999888777654432211 112224567
Q ss_pred CChhHHHhhcccCceEecCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec-cCCCCc
Q 008718 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRK 287 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~-~~~~~~ 287 (556)
..+....++.+++++.+++...+..+... ......+.++.+++| +..++..+|++.+. ...++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEee--------------ecccCceeeEEEEEEcCCCCC
Confidence 78889999999999999987765543221 112223456778888 55566778888764 566789
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 288 WRDHELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 288 ~~~~e~~ll~~la~~~~~al~~a~~~~~~~~ 318 (556)
|+++|.++++.+|.++++||+|+++|++.++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987544
No 28
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.37 E-value=2.7e-12 Score=113.35 Aligned_cols=155 Identities=10% Similarity=0.105 Sum_probs=104.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc--cCcccccCC--hhHHHhhcccCce
Q 008718 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFNSAQAM 224 (556)
Q Consensus 149 ~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 224 (556)
.+..|++++|++++++++++.+++.+++|||.||.+++++..........+..+ .+..+|... +.....+..+++.
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 456799999999999999999999999999999999988765555544443322 233333321 2245678889999
Q ss_pred EecCCCchhhhh-hcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc-CCCCccccchHHHHHHHHHH
Q 008718 225 RLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~-~~~~~~~~~e~~ll~~la~~ 302 (556)
.++|........ ....-...+-++.+.+| +..++...|++.++. ..+|.|++.|++++..+|++
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vP--------------i~~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVP--------------MVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEE--------------EEETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEE--------------EEECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 998765421100 00111224567788888 455566788888866 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008718 303 VAVALSHAAILEDSM 317 (556)
Q Consensus 303 ~~~al~~a~~~~~~~ 317 (556)
+++||+++++|++.+
T Consensus 148 l~iAi~qa~l~~~~~ 162 (171)
T 4glq_A 148 GSLVLERLHFLEQTI 162 (171)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
No 29
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.37 E-value=5.9e-13 Score=112.05 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=74.5
Q ss_pred ccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCC
Q 008718 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLS 493 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~ 493 (556)
++.+++.+.++++.+.+ ..+++.++++++...+.....++..+.+++.||++||+||++++.+.+.....+
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~----- 72 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDD----- 72 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESS-----
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcC-----
Confidence 34788999999999888 357778888776655544444588999999999999999998776665554321
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 494 DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 494 ~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. +.++|.|||+||+++. +|+||++||+
T Consensus 73 ---------------~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~~~ 99 (129)
T 3zxo_A 73 ---------------D-LCIEVTDNGRGMPDEF--------------------TGSGLTNLRQ 99 (129)
T ss_dssp ---------------E-EEEEEEECCCCCTTTT--------------------CSHHHHHHHH
T ss_pred ---------------C-EEEEEecCCCCCCccc--------------------CCcCHHHHHH
Confidence 2 7899999999999864 4899998873
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.36 E-value=1e-11 Score=109.29 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=128.6
Q ss_pred hHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc--cccCcccccCChhHH
Q 008718 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVT 215 (556)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 215 (556)
.+++++..+.++++.+.+..+.+++++.+++.+.+.+++++|+|++.|+++..+......+.. ......++...+.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 345677889999999999999999999999999999999999999999886676665544332 222335667788899
Q ss_pred HhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHH
Q 008718 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELEL 295 (556)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~l 295 (556)
.++.++++..+++......+.........+..+.+.+| +..++..+|++.+....++.|++.+.++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~ 149 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVP--------------VMYRRKVMGVLVVQNKQPQDFSEAAESF 149 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCCHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEe--------------EEECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 99999999999877665544322211233457778888 5567788999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008718 296 IDVVADQVAVALSHAAILED 315 (556)
Q Consensus 296 l~~la~~~~~al~~a~~~~~ 315 (556)
+..+|.+++.++++++++++
T Consensus 150 l~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 150 LVTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 31
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.35 E-value=3.4e-12 Score=111.93 Aligned_cols=154 Identities=14% Similarity=0.227 Sum_probs=107.2
Q ss_pred cCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc---cccCcccccCChhHHHhhcccCceEecCCCch
Q 008718 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPL 232 (556)
Q Consensus 156 ~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
.++++++++.+++.+.+.++++++++++++++. +.+....... .+.+..+|...+.+..++.++++++.+.....
T Consensus 3 ~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~--L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~ 80 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHFDRISFLLLANET--LKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQ 80 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTE--EEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTT
T ss_pred CCCHHHHHHHHHHHHHHhcCcceEEEEEEECCE--EEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCcccc
Confidence 468999999999999999999999999998643 3333332222 12345677778899999999999987544433
Q ss_pred hhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 008718 233 ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAI 312 (556)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~ 312 (556)
..+.........+.++.+++| |..++..+|++.+.+..++.|++++..+++.+|++++++++||++
T Consensus 81 ~~~~~~~~~~~~~~~S~l~vP--------------L~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~l 146 (165)
T 3o5y_A 81 DNFYEKQYLAILDLKSILVIP--------------IYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVEL 146 (165)
T ss_dssp CCCTTHHHHHTTTCCEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccchHHHhhCCCEEEEeC--------------eeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211111234568889999 566777899999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008718 313 LEDSMRARNQLME 325 (556)
Q Consensus 313 ~~~~~~~~~~l~~ 325 (556)
|++..+.++++++
T Consensus 147 y~~~~~~~~~~~~ 159 (165)
T 3o5y_A 147 YGQVLRSKQEWED 159 (165)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9987776655543
No 32
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.32 E-value=1.5e-12 Score=112.07 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhh
Q 008718 455 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 455 ~d~~~l~~il~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~i 530 (556)
.|...+.+++.||++||+||+.+ +.+.+.+...++ ++.|+|+|||+||+ .++++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~--------------------~~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC--------------------EEEEEEEECCCCcC--hHHHh
Confidence 37888999999999999999965 545555444333 39999999999999 88999
Q ss_pred hccCcccCCCCCCCCCcceeeecccC
Q 008718 531 FTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 531 F~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|++|++++.. ..|+|+||++||+
T Consensus 93 ~~~~~~~~~~---~~~~GlGL~iv~~ 115 (145)
T 1th8_A 93 RQPLFTTKPE---LERSGMGFTIMEN 115 (145)
T ss_dssp TCCC----------CCCSCHHHHHHH
T ss_pred hcccccCCCC---CCCCcchHHHHHH
Confidence 9999987652 3589999999873
No 33
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.30 E-value=4.8e-11 Score=105.02 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCccccc--CChhHHHhhc
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~ 219 (556)
..++++++.+.+..+.+++++.+++.+.+.+++++|+|+++|+++..+......+... .....++. ..+.+..++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4578899999999999999999999999999999999999998887777666555332 23334555 5788899999
Q ss_pred ccCceEecCCCchhhhhhc----ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHH
Q 008718 220 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (556)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ 294 (556)
++++..+++.......... ......+.++.+++| +..++..+|++.+.+..+ +.|++++.+
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICP--------------IVVKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEE--------------EEETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEE--------------EEeCCcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999987765543211 011124567778888 556777899999998664 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008718 295 LIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 295 ll~~la~~~~~al~~a~~~~~ 315 (556)
++..+|++++++++|++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998863
No 34
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.26 E-value=1.2e-11 Score=113.38 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=94.1
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecc---ccccCccccc
Q 008718 133 MGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPI 209 (556)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 209 (556)
+..++++.++...+.++++.+++++|++++++.+++.+.+.+++|+|.||++++++........... +...+..+|.
T Consensus 5 ~~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (208)
T 2lb5_A 5 TWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPA 84 (208)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEG
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCCh
Confidence 4456677788889999999999999999999999999999999999999999987655444433322 1112222222
Q ss_pred CC--hhHHH------------------------hhcccCceEecCCCchhhhhh-cccCCCCCcceeeeeccccccCccc
Q 008718 210 NL--PIVTD------------------------VFNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQI 262 (556)
Q Consensus 210 ~~--~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~ 262 (556)
.. ..... +..+++++.+++......... .......+.++.+++|
T Consensus 85 ~~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vP--------- 155 (208)
T 2lb5_A 85 GDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------- 155 (208)
T ss_dssp GGCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEE---------
T ss_pred hhCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEE---------
Confidence 11 11122 233444444444332211100 0000123567778888
Q ss_pred cCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 263 NDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 263 ~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~ 315 (556)
+..++..+|++.+.+..++.|+++|+++++.+|++++++++++++|+.
T Consensus 156 -----i~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 156 -----LMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -----EEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----EEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677899999998889999999999999999999999999988753
No 35
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.25 E-value=8.1e-12 Score=104.21 Aligned_cols=94 Identities=24% Similarity=0.261 Sum_probs=69.5
Q ss_pred eHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCC
Q 008718 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
++.+.++++.+.+ ...++.++++++...+.....+...+.+++.|+++||+||++++.+.+.....+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~--------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVED--------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEE---------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCC---------
Confidence 4566677777666 356777777776554444444578899999999999999999876666554332
Q ss_pred CCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. +.++|+|||+|||++. +|+||++||+
T Consensus 69 -----------~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~~~ 95 (124)
T 3zxq_A 69 -----------D-VRVEVVDDGVGISGDI--------------------TESGLRNLRQ 95 (124)
T ss_dssp -----------E-EEEEEEECCCSSCGGG--------------------SHHHHHHHHH
T ss_pred -----------C-EEEEEEECCCCCCccc--------------------cccCHHHHHH
Confidence 2 7899999999999864 2888888763
No 36
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.20 E-value=1.6e-10 Score=99.59 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCCC----CeeEEEEeec--cccccCcccccCChhHHHhhcccCceEecCCCc
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLN--NQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
+++++++.+++.+.+.+++++|+|+++++++ ..+......+ .....+..++...+.++.++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678899999999999999999999998764 4555443333 233455567888899999999999999998765
Q ss_pred hhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHHHHHHHHHHHHHHHHH
Q 008718 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~-~~~~~~~~e~~ll~~la~~~~~al~~a 310 (556)
++ +.++.+++| +..++..+|++.+.+. +++.|++.+..++..+|.+++++++++
T Consensus 81 d~-----------~~~s~l~vP--------------L~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLP--------------LRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEE--------------EEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEE--------------EccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 467888999 5566778999999887 788999999999999999999999999
Q ss_pred HHHHHH
Q 008718 311 AILEDS 316 (556)
Q Consensus 311 ~~~~~~ 316 (556)
+.+++.
T Consensus 136 ~~~~~~ 141 (149)
T 2vjw_A 136 SSQRRM 141 (149)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887654
No 37
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.19 E-value=2.9e-10 Score=115.31 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=131.5
Q ss_pred hhhHHHHhHHHHHHHHHHHc-cCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhH
Q 008718 136 ILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~-~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (556)
.+++.++...+.+++..+.+ ..+.+++++.+++.+.+.+++++|+||++|+++..+...............+|...+.+
T Consensus 191 ~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T 1ykd_A 191 ATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchh
Confidence 34455667788999999999 99999999999999999999999999999988777666554332222333567778899
Q ss_pred HHhhcccCceEec-CCCchhhhhhc---ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC------
Q 008718 215 TDVFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG------ 284 (556)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~------ 284 (556)
+.++.+++++.++ +......+... ......+.++.+++|| ...++..+|++.+.+..
T Consensus 271 ~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl-------------~~~~~~~iGvl~l~~~~~~~~~~ 337 (398)
T 1ykd_A 271 GIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPV-------------FNGDQELIGVTQLVNKKKTGEFP 337 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEE-------------ECSSSCEEEEEEEEEECCSSCCC
T ss_pred hHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEee-------------ecCCCCEEEEEEEEecCCccccc
Confidence 9999999999998 77665544322 0111234677889994 22467789999988766
Q ss_pred --------------CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 285 --------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 285 --------------~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~ 319 (556)
++.|++.+.+++..+|.+++++|+|+++|++.++.
T Consensus 338 ~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 338 PYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999876543
No 38
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.15 E-value=7.3e-11 Score=105.42 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=119.6
Q ss_pred HHhHHHHHHHHHHHccC-ChHHHHHHHHHHHHhhhCCceeEEEeccCCCC--eeEEEEe---ecc-------ccccCccc
Q 008718 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSYT---LNN-------QIQIGSSV 207 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~l-~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~~~---~~~-------~~~~~~~~ 207 (556)
++++.+.++++.+.+.+ +++++++.+++.+.+.+++++|+|+++|+++. .+..... .+. .......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 46778999999999999 99999999999999999999999999997653 3332211 111 11223357
Q ss_pred ccCChhHHHhhcccCceEecCCCchhhhhhccc-CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-
Q 008718 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 285 (556)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~- 285 (556)
|...+.++.++.+++++.+++...+.++..... ......++.+++| +..++.++||+.+.+...
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vP--------------l~~~~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIP--------------ITQGKEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEE--------------eccCCEEEEEEEEEeCCCC
Confidence 788899999999999999999888776642111 1123468889999 555677899999987765
Q ss_pred CccccchHHHHHHHHHHHHHHH
Q 008718 286 RKWRDHELELIDVVADQVAVAL 307 (556)
Q Consensus 286 ~~~~~~e~~ll~~la~~~~~al 307 (556)
..|++++.++++.+|.+++++|
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999998
No 39
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.14 E-value=2e-11 Score=125.64 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
|+..|.+++.||++||++|+..|+ +.+.+...... +.++.|+|+|||+|||++.++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCc-----------------CceEEEEEEECCCCCCHHHHHHHh
Confidence 458999999999999999998754 55554443310 014899999999999999999999
Q ss_pred ccCcccCCCC--CCCCCcceeeeccc
Q 008718 532 TKFAQSRGSS--CQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~--~~~~G~GlGL~i~k 555 (556)
++|+++.... ...+|+|+||++|+
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~ 116 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAV 116 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHH
T ss_pred ccccccCCcccccCCCCccchHHHHH
Confidence 9997665432 23468999999986
No 40
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.14 E-value=2.1e-11 Score=124.15 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=65.3
Q ss_pred eEccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChh
Q 008718 453 AVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 453 ~~~d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
...|+..|.+++.||++||++|+..++ +.+.+...... +.++.|+|+|||+|||++.++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCc-----------------CcEEEEEEEECCCCCCHHHHH
Confidence 345789999999999999999997754 55544433210 014899999999999999999
Q ss_pred hhhccCcccCCCC--CCCCCcceeeeccc
Q 008718 529 LLFTKFAQSRGSS--CQTPRAGLGLAICR 555 (556)
Q Consensus 529 ~iF~~f~~~~~~~--~~~~G~GlGL~i~k 555 (556)
++|++|+++.... ...+|+|+||++|+
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~ 117 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAV 117 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHH
T ss_pred HHhcccccccccccccCCCCceeeHHHHH
Confidence 9999997655432 23358999999986
No 41
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.14 E-value=2e-10 Score=102.44 Aligned_cols=158 Identities=14% Similarity=0.033 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEE--Eeeccccc-cCcccccCChhHHHhhcc
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS--YTLNNQIQ-IGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (556)
..+.++++.+.++.+++++++.+++.+.+.++++.|+|+++++++ .+.+. .+...... .....+...+.+..++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 357788899999999999999999999999999999999995444 34332 23222211 112233345789999999
Q ss_pred cCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccc-eEEEEEecc-CCCCccccchHHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSY-AVMVLMLPT-DGGRKWRDHELELIDV 298 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~-~~gvl~~~~-~~~~~~~~~e~~ll~~ 298 (556)
+++..+++................+.++.+++| +..++. .+|++.+++ ..++.|++++.+++..
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vP--------------l~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIP--------------ISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEE--------------ECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEE--------------EEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999876654432111111113456778888 445555 799999998 7888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008718 299 VADQVAVALSHAAILEDS 316 (556)
Q Consensus 299 la~~~~~al~~a~~~~~~ 316 (556)
+|.++++++++++.+++.
T Consensus 148 la~~~a~al~~a~~~~~~ 165 (181)
T 2qyb_A 148 LAGQLAQAVKIVTEMEAK 165 (181)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998655443
No 42
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.13 E-value=8e-10 Score=120.05 Aligned_cols=169 Identities=11% Similarity=0.088 Sum_probs=129.2
Q ss_pred HHHHhHHHHHHHHHHHc-cCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecc---ccccCcccccCChhH
Q 008718 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIV 214 (556)
Q Consensus 139 ~~~~~~~l~~~~~~l~~-~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 214 (556)
+.++++.+.++++.+.+ ..+.+++++.+++.+.+.+++++|+|++.|+ ..+......+. ....+..+|...+.+
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS--SEEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC--CeEEEEeecCCcccccccceeccCCCCHH
Confidence 34677889999999988 7899999999999999999999999999997 33333222211 122344577788999
Q ss_pred HHhhcccCceEecCCCchhhhhhcc-cCCCCCcceeeeeccccccCccccCCCCCCcc-cceEEEEEeccCCCC-ccccc
Q 008718 215 TDVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLMLPTDGGR-KWRDH 291 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~gvl~~~~~~~~-~~~~~ 291 (556)
+.++.+++++.+++...+.++.... .....+.++.+++| +..+ +.++|++.+.+..++ .|++.
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vP--------------L~~~~g~viGVL~l~~~~~~~~f~~~ 319 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFSKF 319 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEE--------------CCCSSSCCCEEEEEEEESSSSSCCTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEe--------------EECCCCCEEEEEEEEECCCCCCCCHH
Confidence 9999999999999988876653211 11123456888999 4455 578999998776654 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 292 ELELIDVVADQVAVALSHAAILEDSMRARNQL 323 (556)
Q Consensus 292 e~~ll~~la~~~~~al~~a~~~~~~~~~~~~l 323 (556)
|.+++..+|.+++++++|++++++.++.+.+.
T Consensus 320 d~~ll~~lA~~~aiAIena~l~~~l~~~~~~~ 351 (691)
T 3ibj_A 320 DEDLATAFSIYCGISIAHSLLYKKVNEAQYRS 351 (691)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887765443
No 43
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.13 E-value=2.3e-09 Score=93.41 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=121.5
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhccc
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (556)
....+.++...+.+..|+++.++.++..+.+.+++++|.+|+.|+++..+.+....+. +....++...+.++.+..++
T Consensus 15 ~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~~~~~i~~geGi~G~v~~~g 92 (167)
T 3mmh_A 15 YREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--LACTRIPFGRGVCGQAWAKG 92 (167)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--CCCSEEETTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--ccceEeccCCChHHHHHhCC
Confidence 3456777777888999999999999999999999999999999987777776544332 23457888999999999999
Q ss_pred CceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHH
Q 008718 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (556)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~ 301 (556)
+++++++...++.+- ......++.+++| +..++.++||+.+.+..++.|+++|..+++.+|+
T Consensus 93 ~~~~v~Dv~~~p~~~----~~~~~~~S~i~vP--------------i~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~ 154 (167)
T 3mmh_A 93 GTVVVGDVDAHPDHI----ACSSLSRSEIVVP--------------LFSDGRCIGVLDADSEHLAQFDETDALYLGELAK 154 (167)
T ss_dssp SCEEESCGGGSTTCC----CSSTTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred cEEEECCcccCcchh----hcCccCCeEEEEE--------------eccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999999988877642 1234567889999 4456788999999998889999999999999999
Q ss_pred HHHHHH
Q 008718 302 QVAVAL 307 (556)
Q Consensus 302 ~~~~al 307 (556)
+++.++
T Consensus 155 ~la~~i 160 (167)
T 3mmh_A 155 ILEKRF 160 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999877
No 44
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.12 E-value=1.7e-09 Score=108.33 Aligned_cols=165 Identities=10% Similarity=0.093 Sum_probs=126.3
Q ss_pred hHHHHhHHHHHHHHHHHcc-CChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEee---ccccccCcccccCChh
Q 008718 138 TQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL---NNQIQIGSSVPINLPI 213 (556)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~-l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 213 (556)
+++++++.+.+++..+.++ .+.+++++.+++.+.+.+++++|+|+++|++ .+...... ......+..+|...+.
T Consensus 175 ~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~ 252 (368)
T 1mc0_A 175 KLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGI 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSS--SEEEEEETTEECCCSTTCCEECTTSHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCC--ceEEEEeccccccccccceeecCCCce
Confidence 4455678899999999998 6999999999999999999999999999973 33333222 1223334466778889
Q ss_pred HHHhhcccCceEecCCCchhhhhhcccC-CCCCcceeeeeccccccCccccCCCCCCcc-cceEEEEEeccCCCC-cccc
Q 008718 214 VTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLMLPTDGGR-KWRD 290 (556)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~gvl~~~~~~~~-~~~~ 290 (556)
+..++.++++..+++......+...... ...+.++.+++| +..+ +.++|++.+.+..++ .|++
T Consensus 253 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~iGvl~l~~~~~~~~f~~ 318 (368)
T 1mc0_A 253 AGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFSK 318 (368)
T ss_dssp HHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEE--------------EECTTSCEEEEEEEEEETTSSSCCH
T ss_pred eeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEe--------------eECCCCcEEEEEEEEECCCCCCCCH
Confidence 9999999999999988766554311000 012246788888 4443 778999999877654 7999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 291 ~e~~ll~~la~~~~~al~~a~~~~~~~~ 318 (556)
.+.+++..+|.+++++++|++++++.++
T Consensus 319 ~d~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 319 FDEDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.10 E-value=1.5e-09 Score=108.60 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccC
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (556)
.+.+.++++.+ +++|++++++.+++.+.+.+++++|+||++|+++..+......+........+|...+.++.++.+++
T Consensus 13 ~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~ 91 (368)
T 1mc0_A 13 DRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ 91 (368)
T ss_dssp HHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred hHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcCC
Confidence 45577888888 88999999999999999999999999999998876665544433212223346777888999999999
Q ss_pred ceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcc--cceEEEEEeccCC-CCccccchHHHHHHH
Q 008718 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMVLMLPTDG-GRKWRDHELELIDVV 299 (556)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~gvl~~~~~~-~~~~~~~e~~ll~~l 299 (556)
++.+++...+.+... ......+.++.+++|+ ..+ +..+|++.+.... ++.|++.+.+++..+
T Consensus 92 ~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl--------------~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~l 156 (368)
T 1mc0_A 92 CIQLKDLTSDDVQQL-QNMLGCELQAMLCVPV--------------ISRATDQVVALACAFNKLGGDFFTDEDEHVIQHC 156 (368)
T ss_dssp CEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEE--------------ECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHH
T ss_pred eEEeccccccccccc-ccccCcccceEEEEEe--------------ecCCCCcEEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 999999887664221 1112234678888894 444 6789999866544 557999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008718 300 ADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~~ 318 (556)
+.++++++++++++++.++
T Consensus 157 a~~~~~al~~~~l~~~~~~ 175 (368)
T 1mc0_A 157 FHYTGTVLTSTLAFQKEQK 175 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876544
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.10 E-value=3.4e-10 Score=97.59 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=110.3
Q ss_pred ccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc--cccC-cccccCChhHHHhhcccCceEecCCCc
Q 008718 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (556)
Q Consensus 155 ~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
++++++++++.+++.+.+.+++++|+|++.|++ ..+......+.. .... ..++...+.+..++.++++..+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 356788999999999999999999999999954 444443333221 1111 255667889999999999999998766
Q ss_pred hhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHHHHHHHHHHHHHHHHHH
Q 008718 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~-~~~~~~e~~ll~~la~~~~~al~~a 310 (556)
...+..... ...+.++.+++| +..++..+|++.+.+..+ +.|++++.+++..+|.+++.+++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVP--------------VRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEee--------------EEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 654432221 234567788888 556778899999988776 7999999999999999999999999
Q ss_pred HHHHHH
Q 008718 311 AILEDS 316 (556)
Q Consensus 311 ~~~~~~ 316 (556)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 988653
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.06 E-value=2.6e-10 Score=98.41 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=102.7
Q ss_pred cCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhh
Q 008718 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 156 ~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
+.|++++++.+++.+.+.+++++|+|+++|+++ .+......+.+.... ..+...+.+..++.+++++++++...+..+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 358899999999999999999999999999876 555443333221100 112344567888999999999987766533
Q ss_pred hhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008718 236 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~ 314 (556)
... ......+.++.+++| +..++..+|++.+....++.|++.+++++..+|.+++.++++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFP--------------LVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEE--------------EESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEec--------------eEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111112346778888 44577789999999888889999999999999999999998887644
Q ss_pred H
Q 008718 315 D 315 (556)
Q Consensus 315 ~ 315 (556)
+
T Consensus 145 ~ 145 (151)
T 3hcy_A 145 A 145 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.02 E-value=1.3e-08 Score=103.12 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=122.0
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHH----HHhhhCCceeEEEeccCCCCeeEEEEeeccc-cccCcccccCChhH
Q 008718 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 214 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~l~~~~il~~~~~~----l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 214 (556)
++.+..+.++...+.+ .+++++++++++. +.+.+++++|+||++|+++..+......+.. ...+..+|...+.+
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 3455667777766754 7888766665555 8999999999999999887766655443322 22344677788999
Q ss_pred HHhhcccCceEecCCCch---hhhhhccc-CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-------
Q 008718 215 TDVFNSAQAMRLPYNCPL---ARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 283 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~------- 283 (556)
+.++.+++++.+++.... ..+..... ....+.++.+++|+ ...++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl-------------~~~~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPL-------------LSEQGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEE-------------ECSSCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEE-------------ECCCCCEEEEEEEeccCCccccc
Confidence 999999999999988765 44432111 11234567888895 2235678999998876
Q ss_pred --------CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 284 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 284 --------~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~ 319 (556)
.++.|++++.+++..++.++++++++++++++..+.
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~ 194 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQK 194 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987765443
No 49
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=99.01 E-value=7.6e-09 Score=92.48 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=122.2
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhh-CCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhh
Q 008718 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVF 218 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (556)
+.....+.++...+.+..++++.++.+++.+.+.+ +++.|++|+.|++ .+.+....+. .....++...+.++.+.
T Consensus 25 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~aa 100 (195)
T 1vhm_A 25 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTAV 100 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHHH
Confidence 33456788888889999999999999999999999 9999999999863 4444322222 33556788899999999
Q ss_pred cccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHH
Q 008718 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (556)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~ 298 (556)
.+++++.+++....+.+. ......++.+++|+ ..++.++||+.+.+..+..|++++.++++.
T Consensus 101 ~tg~~i~V~Dv~~~p~~~----~~~~~~~S~l~VPI--------------~~~g~viGVL~i~s~~~~~F~e~d~~~L~~ 162 (195)
T 1vhm_A 101 ARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPL--------------VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 162 (195)
T ss_dssp HHTSCEEESCTTTCTTCC----CSCCCCSEEEEEEE--------------EETTEEEEEEEEEESSTTCCCHHHHHHHHH
T ss_pred hcCCEEEECCcccCcchh----hcCCCccEEEEEeE--------------eECCEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999999988766542 12345688999994 456778999999998888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008718 299 VADQVAVALSHAAI 312 (556)
Q Consensus 299 la~~~~~al~~a~~ 312 (556)
+|.+++.+++++..
T Consensus 163 lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 163 LVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
No 50
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.98 E-value=1.1e-08 Score=86.43 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=99.8
Q ss_pred hHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHh
Q 008718 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (556)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (556)
.+..+++.+-++++.| ..++.+++++.+++...+.+++++|.+|++|+++ .+......++.. -
T Consensus 9 ~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~-~l~~~aa~G~~~---------------~ 71 (160)
T 3cit_A 9 SRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADN-GVQTTARHGSKE---------------R 71 (160)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--C-CCEEEEEESCHH---------------H
T ss_pred HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCC-ceeeeeccCchh---------------h
Confidence 4556888999999999 7778899999999999999999999999999853 333222222110 0
Q ss_pred hcccCceEecCCCch-hhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHH
Q 008718 218 FNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELEL 295 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~-~~~~~~~~e~~l 295 (556)
+..-+ .+++.... ++|. .......++.+++||. ..++..+|++.+.++ +...|+++|.+.
T Consensus 72 l~~lr--~~~~~~~~gpr~~---~~tg~~t~svl~vPL~-------------~~~g~~~Gvlql~N~~~~~~f~~eD~e~ 133 (160)
T 3cit_A 72 LSTLE--TTADPLAIGPQWL---ERPGTHLPCVLLLPLR-------------GADEGSFGTLVLANSVAISAPDGEDIES 133 (160)
T ss_dssp HTTSC--CCCCTTCCSCEEE---ECTTSSSCEEEEEEEE-------------CSSSSEEEEEEEEESSCCCCCCHHHHHH
T ss_pred hhhhh--ccccccccccccc---cccCcccceeEEEeee-------------cCCCcEEEEEEEeccCCCCCCCHHHHHH
Confidence 00000 01111111 1222 1223346777888842 456678999887554 455899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 296 IDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 296 l~~la~~~~~al~~a~~~~~~~~~ 319 (556)
++.+|.+++.+++|++++++++..
T Consensus 134 l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 134 LQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887553
No 51
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.97 E-value=6.6e-09 Score=112.86 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=124.3
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcc
Q 008718 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (556)
++.+.+.++++.|+ .++++++++++++.+.+.+++++|+||++|+++..+......+........+|.. +.++.++.+
T Consensus 12 e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~~ 89 (691)
T 3ibj_A 12 DRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVED 89 (691)
T ss_dssp THHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHHH
Confidence 34567899999999 9999999999999999999999999999998877665443333221222356777 899999999
Q ss_pred cCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcc--cceEEEEEeccC-CCCccccchHHHHH
Q 008718 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMVLMLPTD-GGRKWRDHELELID 297 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~gvl~~~~~-~~~~~~~~e~~ll~ 297 (556)
++++.+++...++.+... .....+.++.+++|+ ..+ +.++|++.+... .++.|++++.+++.
T Consensus 90 ~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI--------------~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~ 154 (691)
T 3ibj_A 90 KKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPV--------------ISRATDQVVALACAFNKLEGDLFTDEDEHVIQ 154 (691)
T ss_dssp CCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEE--------------ECSSSCSEEEEEEEESBSSSCCCCTTHHHHHH
T ss_pred CCeEEeccchhccccccc-cccCCccceEEEEEe--------------EcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHH
Confidence 999999998876644221 112234678889994 444 778999996654 45689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008718 298 VVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 298 ~la~~~~~al~~a~~~~~~~ 317 (556)
.++.+++.++.++.++++.+
T Consensus 155 ~la~~~a~al~~a~l~~~~~ 174 (691)
T 3ibj_A 155 HCFHYTSTVLTSTLAFQKEQ 174 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776543
No 52
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.92 E-value=1.7e-10 Score=120.40 Aligned_cols=84 Identities=23% Similarity=0.403 Sum_probs=62.5
Q ss_pred eEccHHHHHHHHHHHHHHHhhcCCC-C---eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChh
Q 008718 453 AVGDEKRLMQTILNIVGNAVKFTKE-G---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 453 ~~~d~~~l~~il~nLl~NAik~~~~-g---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
+.+|+..|.+++.||+.||++|+.. | .+.+.+.....+ ++.|+|+|||+|||++.++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 4569999999999999999999974 3 344433333212 4899999999999999999
Q ss_pred hhhccCcccCCC---CCCCCCcceeeeccc
Q 008718 529 LLFTKFAQSRGS---SCQTPRAGLGLAICR 555 (556)
Q Consensus 529 ~iF~~f~~~~~~---~~~~~G~GlGL~i~k 555 (556)
++|++|+++..- ....+|+|+||++|+
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~ 121 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAV 121 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHH
T ss_pred HHhhhhccCCccccccccCCCceechhhhh
Confidence 999887654321 122358999999886
No 53
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.88 E-value=1.2e-08 Score=90.19 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc---cccCcccccCC--hhHHHh----------------
Q 008718 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINL--PIVTDV---------------- 217 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~---------------- 217 (556)
++++++++++.+.+.+++|+|.||++++++............ ...+..+|... ......
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 367899999999999999999999999876555444443321 12233333211 111222
Q ss_pred --------hcccCceEecCCCchhhhhh-cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcc
Q 008718 218 --------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (556)
Q Consensus 218 --------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~ 288 (556)
..+++++.+++......+.. .......+.++.+++| +..++..+|++.+++..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------------LMHHQELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECC--------------CSCSSCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEE--------------EEECCEEEEEEEEEeCCCCCC
Confidence 33344444444332221110 0011134567778888 555667799999988889999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 008718 289 RDHELELIDVVADQVAVALSHAAIL 313 (556)
Q Consensus 289 ~~~e~~ll~~la~~~~~al~~a~~~ 313 (556)
+++|+++++.+|.+++++++++++|
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999876
No 54
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.86 E-value=2.8e-08 Score=96.13 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=109.1
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCcccccCC--hhHHH
Q 008718 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (556)
+..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....+.. ..|..+|..+ .....
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 3566789999999999999999999999999999999999999999888776665555442 2333333321 22345
Q ss_pred hhcccCceEecCCCchhh-h---------hhccc-----CCC----------CCcceeeeeccccccCccccCCCCCCcc
Q 008718 217 VFNSAQAMRLPYNCPLAR-I---------RLLVG-----RYV----------PPDIVAVRVPLLHLSNFQINDWPELPAK 271 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~---------~~~~~-----~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (556)
.+..++...+.|...... + ..... ... .+-++.+.+| +..+
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvp--------------I~~~ 289 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSIS--------------IVRD 289 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EEET
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEE--------------EEEC
Confidence 555666666665543310 0 00000 000 1223445555 3344
Q ss_pred cceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008718 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 272 ~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~ 314 (556)
+...|++.++...+|.|+..++.+++.++.+++++|.++..++
T Consensus 290 ~~LWGLl~~Hh~~pR~w~~~e~~~~e~la~~l~iai~q~e~~~ 332 (337)
T 2ool_A 290 NRLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQIGVLEEAE 332 (337)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777666999999999999999999999997665544
No 55
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.81 E-value=1.5e-07 Score=95.84 Aligned_cols=161 Identities=5% Similarity=-0.036 Sum_probs=112.1
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCcccccC--ChhHHH
Q 008718 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPIN--LPIVTD 216 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 216 (556)
+..+.+++++..|+++++++++++++++++++.+++|||.||.+++++.....+....+.. ..|..+|.. ......
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 3456788999999999999999999999999999999999999999887766665554432 234344432 123355
Q ss_pred hhcccCceEecCCCchhh-h---------hhcccC-----C----------CCCcceeeeeccccccCccccCCCCCCcc
Q 008718 217 VFNSAQAMRLPYNCPLAR-I---------RLLVGR-----Y----------VPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~---------~~~~~~-----~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (556)
.+..++...+.|...... + .+.... . ..+-++.+.+| +..+
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvp--------------I~~~ 267 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSIS--------------IVVG 267 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EECS
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEE--------------EEEC
Confidence 566667767766554320 0 000000 0 01224455556 3444
Q ss_pred cceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 272 ~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~ 315 (556)
+...|++.++...++.|+..++.+++.++.+++++|.++..+++
T Consensus 268 ~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 268 GKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp SSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777679999999999999999999999987765544
No 56
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.81 E-value=6.8e-08 Score=92.31 Aligned_cols=154 Identities=8% Similarity=0.002 Sum_probs=108.1
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc--cCcccccC--ChhHHHh
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN--LPIVTDV 217 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~ 217 (556)
..+.+++++..|+++++++++++++++++++.+++|||.||.+++++.....+....+... .|..+|.. .......
T Consensus 132 ~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~l 211 (327)
T 4e04_A 132 FFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRL 211 (327)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHH
Confidence 3557889999999999999999999999999999999999999999887777766555432 33333332 1233455
Q ss_pred hcccCceEecCCCchhh-h---------hhcccC-----CC----------CCcceeeeeccccccCccccCCCCCCccc
Q 008718 218 FNSAQAMRLPYNCPLAR-I---------RLLVGR-----YV----------PPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~---------~~~~~~-----~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (556)
+..++...++|...... + ...... .. .+-++.+.+| +..++
T Consensus 212 y~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvp--------------I~~~~ 277 (327)
T 4e04_A 212 YTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSIS--------------ILRGE 277 (327)
T ss_dssp HHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEE--------------EEETT
T ss_pred HHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEE--------------EEECC
Confidence 66667666766544310 0 000000 00 1233455555 34445
Q ss_pred ceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHH
Q 008718 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (556)
Q Consensus 273 ~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~ 309 (556)
...|++.++..++|.|+..++.+++.++.+++++|.+
T Consensus 278 ~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~ 314 (327)
T 4e04_A 278 RLWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGV 314 (327)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6678887787889999999999999999999999953
No 57
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.78 E-value=1.2e-07 Score=83.92 Aligned_cols=145 Identities=6% Similarity=0.004 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhh-----CCceeEEEeccCCC-CeeEEEEeeccccccCcccccCChhHHHh
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (556)
..+.++...+....+..+.++.+++.+.+.+ +++.|.+|+.|+++ ..+.+.... .......++...+.++.+
T Consensus 27 ~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~--g~~~~~~i~~g~Gi~G~a 104 (180)
T 1f5m_A 27 QLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQ--GKVACQMIQFGKGVCGTA 104 (180)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEE--ESCCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecC--CCccceeecCCCcchhhh
Confidence 4566777778888899999999999999999 89999999998754 455543221 122345678889999999
Q ss_pred hcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008718 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~ 297 (556)
..+++++++++...++++. ....+.++.+++|+ ...++.++||+.+++..++.|++++.++++
T Consensus 105 a~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi-------------~~~~g~viGVL~l~s~~~~~F~~~d~~~L~ 167 (180)
T 1f5m_A 105 ASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPI-------------ISNDGKTLGVIDIDCLDYEGFDHVDKEFLE 167 (180)
T ss_dssp HHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEE-------------ECTTSCEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred hhcCCEEEeCCcccCcccc----ccCcccceEEEEEE-------------EcCCCeEEEEEEeccCCCCCcCHHHHHHHH
Confidence 9999999999988776653 22345688899995 322677899999999888899999999999
Q ss_pred HHHHHHHHHH
Q 008718 298 VVADQVAVAL 307 (556)
Q Consensus 298 ~la~~~~~al 307 (556)
.+|.+++.++
T Consensus 168 ~la~~~a~~~ 177 (180)
T 1f5m_A 168 KLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 58
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.78 E-value=2.2e-07 Score=94.99 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=112.2
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCcccccC--ChhHHHh
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPIN--LPIVTDV 217 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 217 (556)
..+.+++++..|+++++++++++++++++++.+++|||.||.+++++.....+....+.. ..|..+|.. .......
T Consensus 136 ~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~l 215 (520)
T 3zq5_A 136 FYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRL 215 (520)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHH
Confidence 345688999999999999999999999999999999999999999887776665554432 233333332 1223555
Q ss_pred hcccCceEecCCCchhh-h---------hhcccC-----C----------CCCcceeeeeccccccCccccCCCCCCccc
Q 008718 218 FNSAQAMRLPYNCPLAR-I---------RLLVGR-----Y----------VPPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~---------~~~~~~-----~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (556)
+..++...++|...... + .+.... . ..+-++.+.+| +..++
T Consensus 216 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvp--------------I~~~~ 281 (520)
T 3zq5_A 216 FIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTIS--------------LIKDG 281 (520)
T ss_dssp HHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEE--------------EEETT
T ss_pred HHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEe--------------EEECC
Confidence 66677777766654311 0 000000 0 12224455555 34455
Q ss_pred ceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDS 316 (556)
Q Consensus 273 ~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~ 316 (556)
...|++.++...++.|+..++++++.++.+++++|.++..+++.
T Consensus 282 ~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~~~~~ 325 (520)
T 3zq5_A 282 HLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETF 325 (520)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788877777899999999999999999999999877665443
No 59
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.77 E-value=6.9e-08 Score=92.48 Aligned_cols=155 Identities=5% Similarity=-0.013 Sum_probs=109.0
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccc--cCcccccC--ChhHHHh
Q 008718 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN--LPIVTDV 217 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~ 217 (556)
..+.+++++..|+++++++++++++++++++.+++|||.||.+++++...+.+....+... .|..+|.. .......
T Consensus 150 ~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~l 229 (343)
T 3s7o_A 150 GPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARAL 229 (343)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHH
Confidence 4567889999999999999999999999999999999999999999887777766555432 33333332 2233555
Q ss_pred hcccCceEecCCCchhh-h---------hhcccC-----CC----------CCcceeeeeccccccCccccCCCCCCccc
Q 008718 218 FNSAQAMRLPYNCPLAR-I---------RLLVGR-----YV----------PPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (556)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~---------~~~~~~-----~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (556)
+..++...+.|...... + ...... .. .+-++.+.+| +..++
T Consensus 230 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvp--------------I~~~~ 295 (343)
T 3s7o_A 230 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVS--------------VVVGG 295 (343)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEE--------------EEETT
T ss_pred HHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEE--------------EEECC
Confidence 66666666666544311 0 000000 00 1233455555 34445
Q ss_pred ceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHH
Q 008718 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 273 ~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a 310 (556)
...|++.++...+|.|+..++++++.++.+++++|.+.
T Consensus 296 ~LWGLL~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 333 (343)
T 3s7o_A 296 QLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVK 333 (343)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66788887778899999999999999999999999544
No 60
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.76 E-value=1e-07 Score=82.60 Aligned_cols=142 Identities=6% Similarity=-0.012 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhC-CceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccC
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (556)
..+.++...+.+..|+...+..++..+.+.++ ++.|.+|+.+++ .+.+....+. +....++...+.++.+..+++
T Consensus 18 ~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg~ 93 (171)
T 3rfb_A 18 MLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHFQE 93 (171)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhhCC
Confidence 34556666677788999999999999999997 999999999853 4444332222 234578899999999999999
Q ss_pred ceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHH
Q 008718 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~ 302 (556)
++++++....+.+- ......++.+++| +..++.++||+.+.+...+.|+++|.++++.+|.+
T Consensus 94 ~i~V~Dv~~~p~~i----~~~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 94 TVIVGDVTTYLNYI----SCDSLAKSEIVVP--------------MMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp CEEESCTTSCSSCC----CSCTTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcccc----ccCcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 99999998877542 1234567889999 44567889999999988889999999999999999
Q ss_pred HHHHH
Q 008718 303 VAVAL 307 (556)
Q Consensus 303 ~~~al 307 (556)
++.++
T Consensus 156 la~~~ 160 (171)
T 3rfb_A 156 LLEKT 160 (171)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 98654
No 61
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.73 E-value=1.6e-07 Score=80.53 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=111.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhC-CceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCc
Q 008718 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (556)
Q Consensus 145 ~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (556)
.+.++...+.+..|+...+..++..+.+.++ ++.|.+|+.+++ .+.+....+. +....++...+.++.+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~--~a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGH--PACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCC--cccEEeeCCCCHHHHHHhhCCE
Confidence 3445555566778999999999999999997 999999999854 4444332222 2345788999999999999999
Q ss_pred eEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHH
Q 008718 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (556)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~ 303 (556)
+.+++....+.+-. .....++.+++| +..++.++||+.+.+..++.|+++|.++++.+|.++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVP--------------IFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEE--------------EEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999988775421 123467888999 445678899999999888899999999999999999
Q ss_pred HHHH
Q 008718 304 AVAL 307 (556)
Q Consensus 304 ~~al 307 (556)
+..+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 62
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.60 E-value=1.2e-07 Score=75.27 Aligned_cols=148 Identities=12% Similarity=0.206 Sum_probs=110.4
Q ss_pred HHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc---ccCccc---ccCChhHHHhhcccCceEe
Q 008718 153 IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI---QIGSSV---PINLPIVTDVFNSAQAMRL 226 (556)
Q Consensus 153 l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (556)
+..-.|.+++.+..++.+.++.+..-.++|+.|.+.+.+.-+.+.+-+. +.-..+ |-..+.++..++..+...+
T Consensus 8 ~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll~ 87 (162)
T 3eea_A 8 LSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLML 87 (162)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEEE
T ss_pred HhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcccc
Confidence 3445688999999999999999999999999999988888777665432 111123 3356778999999988888
Q ss_pred cCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC-ccccchHHHHHHHHHHHHH
Q 008718 227 PYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVAV 305 (556)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~-~~~~~e~~ll~~la~~~~~ 305 (556)
++.....-+.. ...........+.+| +..|+.++|++++.+...+ .|+.+|+.++..+|++.|+
T Consensus 88 ~dp~~s~l~tp-~l~k~~~~~~ILgVP--------------L~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAAI 152 (162)
T 3eea_A 88 TDPGSSDLLTP-KLRKLLRNLCVLAVP--------------MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAAL 152 (162)
T ss_dssp SCGGGCTTSCH-HHHHHTTTEEEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhccH-HHHHHHhhCeEEEec--------------ceeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHH
Confidence 76544322221 112223455677888 7778899999999999888 9999999999999999999
Q ss_pred HHHHHHHHHH
Q 008718 306 ALSHAAILED 315 (556)
Q Consensus 306 al~~a~~~~~ 315 (556)
++++++++++
T Consensus 153 AIdnArLldE 162 (162)
T 3eea_A 153 VVSHMQLFDE 162 (162)
T ss_dssp HHHHHHTC--
T ss_pred HHHHhhhhcC
Confidence 9999988753
No 63
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.52 E-value=1.1e-08 Score=113.75 Aligned_cols=171 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCC--eeEE------EEeeccc--cccCcc
Q 008718 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLEL------SYTLNNQ--IQIGSS 206 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~------~~~~~~~--~~~~~~ 206 (556)
+++.+++..+.+++..|.+.++++++++.+++.+.+.+++++|+||++|+++. .... ..+.... ...+..
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 44556778899999999999999999999999999999999999999997742 1111 1121111 122335
Q ss_pred cccCChhHHHhhcccCceEecCCCchhhhhhcccC-CCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC
Q 008718 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (556)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~ 285 (556)
+|...+.++.++.+++++.+++...++++...... ...+.++.+++|+ ..+++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL-------------~~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPI-------------KNHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEee-------------EcCCCCEEEEEEEEecCC
Confidence 67777889999999999999988877665432111 1233566777784 333677899999887654
Q ss_pred C---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 286 R---KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (556)
Q Consensus 286 ~---~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~ 320 (556)
. .|+++|.+++..+|.+++++++++++++...+.+
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~ 330 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLEN 330 (878)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 9999999999999999999999999987765544
No 64
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.52 E-value=7.8e-08 Score=93.82 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||++++. +.+.+.+.. ++. ..|+|.|||+||+++.++.+|++|++.+
T Consensus 24 ~~~~~v~ELi~NaidA~a-~~I~I~i~~--~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA-TRIDIDIER--GGA-------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCCC-CeEEEEEEe--CCc-------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 478999999999999874 555555432 221 4799999999999999999999998875
Q ss_pred CCC-------CCCCCcceeeecc
Q 008718 539 GSS-------CQTPRAGLGLAIC 554 (556)
Q Consensus 539 ~~~-------~~~~G~GlGL~i~ 554 (556)
... ...++.|+||+.+
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si 104 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASI 104 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHH
T ss_pred ccccchhhhccccCccccchhhh
Confidence 421 1224589998764
No 65
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.47 E-value=1.8e-08 Score=111.99 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhHHHHhHHHHHHHHHHH-ccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEE-ee-ccc--------cccC
Q 008718 136 ILTQEETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TL-NNQ--------IQIG 204 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~-~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~-~~~--------~~~~ 204 (556)
.+++.++.+.+.+++..+. ++.+++++++.+++.+.+.+++++|+|++.++++..+.... .+ ... ....
T Consensus 326 ~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~ 405 (878)
T 3bjc_A 326 SLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREH 405 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccc
Confidence 3444455666777888874 45799999999999999999999999999998765543321 11 110 0113
Q ss_pred cccccCChhHHHhhcccCceEecCCCchhhhhhcccCC-C---CCcceeeeeccccccCccccCCCCCCcc--cceEEEE
Q 008718 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY-V---PPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMVL 278 (556)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~gvl 278 (556)
..+|...+.++.+..+++++.+++...+.++....... . .+.++.+++|| ..+ +.++|++
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL--------------~~~~~g~viGVL 471 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPI--------------KNGKKNKVIGVC 471 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEE--------------ecCCCCcEEEEE
Confidence 34566777889999999999999877766654321111 1 23567778884 333 6789999
Q ss_pred EeccCCC------CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 279 MLPTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (556)
Q Consensus 279 ~~~~~~~------~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~~~~~ 322 (556)
.+.+..+ +.|++.+.++++.+|.+++++|++++++++.++..++
T Consensus 472 ~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 472 QLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp --------------------------------------------------
T ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877654 6999999999999999999999999999988776544
No 66
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.43 E-value=1.9e-07 Score=90.46 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||+++.. +.+.+.+. .++. ..|+|+|||+|||++.++++|++|+++|
T Consensus 28 ~~~~vv~eLv~NAidA~a-~~I~I~i~--~~~~-------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKS-TSIQVIVK--EGGL-------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEE--GGGT-------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcCC-CEEEEEEE--eCCE-------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 477999999999999853 45555543 2221 5799999999999999999999999987
Q ss_pred CCC
Q 008718 539 GSS 541 (556)
Q Consensus 539 ~~~ 541 (556)
...
T Consensus 86 ~~~ 88 (348)
T 3na3_A 86 LQS 88 (348)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.42 E-value=2.3e-06 Score=75.95 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHHHH
Q 008718 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (556)
Q Consensus 346 ~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (556)
+.++...||+.|-|.+|.|++++-. .++..+|+..+...... ... ..++. .- .+..
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~---~~~----~~~i~---------~P----~la~ 78 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKH---ESK----LSNLK---------TP----HLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHH---HHH----HHTTT---------CH----HHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHH---HHH----HHhCC---------CH----HHHH
Confidence 3445569999999999999988632 23344444444333322 221 22211 11 1222
Q ss_pred HHHHHHhhhhcCCceEEEE-eCCCCCceeEccHHHHHHHHHHHHHHHhhc--C--CCCeEEEEEeeeC-CCCCCCCCCCC
Q 008718 426 VIKLIKPVASCKKLSMTLI-MAPELPTYAVGDEKRLMQTILNIVGNAVKF--T--KEGYVSIIASVAK-PESLSDWRPPE 499 (556)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~d~~~l~~il~nLl~NAik~--~--~~g~~~i~~~~~~-~~~~~~~~~~~ 499 (556)
.+-.. ..+.+.+.+.++ +++... ....+..+..++.|+ .||+.+ . ..+.+.+.+.... ++
T Consensus 79 lLl~K--~~~a~e~~i~lev~~~~s~--l~~~~~~lgnLi~na-~~Ai~~~~~~~~~~~I~i~i~~~~~~~--------- 144 (192)
T 1ixm_A 79 DFLTF--NWKTHYMTLEYEVLGEIKD--LSAYDQKLAKLMRKL-FHLFDQAVSRESENHLTVSLQTDHPDR--------- 144 (192)
T ss_dssp HHHHG--GGSCCSSEEEEEEESSCCC--CTTTHHHHHHHHHHH-HHHHHHHBCTTSCCEEEEEEECCCSSS---------
T ss_pred HHHHH--HHHhccCCeEEEEecCccc--cCCCcHHHHHHHHHH-HHHHHhhhccCCCCeEEEEEEEecCCC---------
Confidence 22222 223456677663 343221 111333443333222 444433 1 2344554444431 22
Q ss_pred CCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcc
Q 008718 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 536 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~ 536 (556)
.+.|.|.|+|+||+++.++++|++.++
T Consensus 145 ----------~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 145 ----------QLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ----------SCEEEEEEESCBSCGGGCC--------
T ss_pred ----------EEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 289999999999999999999986654
No 68
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.42 E-value=9.2e-08 Score=94.10 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||++++. +.+.+.+.. ++. ..|+|.|||+|||++.++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~~--~~~-------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLKD--YGV-------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEe--CCc-------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 478999999999999864 455555432 221 5799999999999999999999999876
Q ss_pred CCCC------CCCCc-ceeeec
Q 008718 539 GSSC------QTPRA-GLGLAI 553 (556)
Q Consensus 539 ~~~~------~~~G~-GlGL~i 553 (556)
.... ...|. |+||+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~s 113 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSS 113 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHH
T ss_pred cccccchhcccccCCCCchhhh
Confidence 5421 01243 888764
No 69
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.36 E-value=7.6e-06 Score=87.43 Aligned_cols=160 Identities=10% Similarity=0.027 Sum_probs=109.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeecccc--ccCcccccCC--hhHHHhhcc
Q 008718 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTDVFNS 220 (556)
Q Consensus 145 ~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 220 (556)
.+..+...|+++++++++++++++++++++|+|||.||.+++++.....+....+.. ..|..+|..+ ......+..
T Consensus 133 ~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~ 212 (635)
T 4eho_A 133 TLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYER 212 (635)
T ss_dssp TSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHc
Confidence 456677789999999999999999999999999999999999988777766654432 2333444322 234555566
Q ss_pred cCceEecCCCchhh---------------hhhcccCCCC----------CcceeeeeccccccCccccCCCCCCcccceE
Q 008718 221 AQAMRLPYNCPLAR---------------IRLLVGRYVP----------PDIVAVRVPLLHLSNFQINDWPELPAKSYAV 275 (556)
Q Consensus 221 ~~~~~~~~~~~~~~---------------~~~~~~~~~~----------~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~ 275 (556)
++...+.|...... .......... +-++.+.+| +..++...
T Consensus 213 ~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vp--------------i~~~~~LW 278 (635)
T 4eho_A 213 QRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVS--------------LVVGGKLW 278 (635)
T ss_dssp SCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EEETTEEE
T ss_pred CCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEE--------------EEEcceee
Confidence 66666655432210 0000000011 123445555 44455667
Q ss_pred EEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008718 276 MVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 276 gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~~~~~ 318 (556)
|++.++...++.|+..++.+++.++.++++++.++..++..++
T Consensus 279 GLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 321 (635)
T 4eho_A 279 GLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQSQS 321 (635)
T ss_dssp EEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHHHHH
Confidence 8888887789999999999999999999999988877665433
No 70
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.27 E-value=6.8e-07 Score=88.72 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=54.9
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhh----
Q 008718 454 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (556)
Q Consensus 454 ~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~---- 529 (556)
.++...+.+++.|+++||+++ ..+.+.+.+. .+ -.|+|.|||+|||++..++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~--~~---------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN--ED---------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC--TT---------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE--cC---------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 357778888888999998874 3344544442 11 1599999999999999887
Q ss_pred ----hhccCcccCCC-----CCCCCCcceeeeccc
Q 008718 530 ----LFTKFAQSRGS-----SCQTPRAGLGLAICR 555 (556)
Q Consensus 530 ----iF~~f~~~~~~-----~~~~~G~GlGL~i~k 555 (556)
+|.+++++..- ....++.|+||++|+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~ 121 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 121 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeec
Confidence 99887765321 112246899999875
No 71
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.5e-06 Score=85.03 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||++++ +..+.+.+ .+++. ..|+|+|||+|||++.++.+|++|++++
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i--~~~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIF--KDYGL-------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEE--ETTTT-------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEE--EeCCE-------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 47799999999999986 45555544 22221 5899999999999999999999999887
Q ss_pred CC
Q 008718 539 GS 540 (556)
Q Consensus 539 ~~ 540 (556)
..
T Consensus 83 ~~ 84 (367)
T 3h4l_A 83 IA 84 (367)
T ss_dssp --
T ss_pred CC
Confidence 54
No 72
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.13 E-value=1.8e-05 Score=63.79 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008718 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
....+++..+.+.+|++.++||++||++.+.++++.+.+. .....+.+...++++..+++++++|.
T Consensus 49 m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 49 LRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334444455577899999999999999999999887542 23445889999999999999999873
No 73
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.89 E-value=9.3e-06 Score=81.62 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.||++||++|+. .|.+.+.+....++ .+.++|+|+|+|+|+.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~------ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHR------ 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCC------
Confidence 456799999999999999982 46666666554332 3999999999999986
Q ss_pred ccCcccCCCCCCCCCcceeeecccC
Q 008718 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.. ..+.|+||+++++
T Consensus 349 ----~~------~~~~G~GL~lv~~ 363 (399)
T 3ke6_A 349 ----DG------ARGRGRGLAMAEA 363 (399)
T ss_dssp ------------------CHHHHHT
T ss_pred ----CC------CCCCCcHHHHHHH
Confidence 01 1356899998874
No 74
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.61 E-value=0.00031 Score=56.30 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008718 339 KAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 339 ~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+..+.+.+++..++|++++|++.+.+.++.+... ..+..+.+.+.+.++..++++++++++
T Consensus 55 ~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 55 QLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334467889999999999999999999877543 256678899999999999999988753
No 75
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.47 E-value=2.3e-05 Score=71.48 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCC---------------CeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTKE---------------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~~---------------g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.||++||+++... +.+.+.+....+. ..|.|.|||+||+++.
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 5889999999998641 3333333333222 4689999999999999
Q ss_pred hhhhhccCc
Q 008718 527 IPLLFTKFA 535 (556)
Q Consensus 527 ~~~iF~~f~ 535 (556)
+.+.|..+.
T Consensus 89 l~~~l~~ia 97 (220)
T 2wer_A 89 LINNLGTIA 97 (220)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHhHh
Confidence 877775543
No 76
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=97.46 E-value=0.0003 Score=57.40 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc-cccCcccccCChhHHHhhcccCceEecCCCchhhhhhccc
Q 008718 162 ILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240 (556)
Q Consensus 162 il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
.+++.++.+.+.+++ .++| +++...+++..... ...+ -++ .+.+.+++.+++..+..+..... .+.
T Consensus 3 ~a~~~AeiI~~~~~~-aV~I-----tD~~~ilA~~G~g~~~~~~--~~i-s~~~~~~i~~~k~~~~~~~~~~~----~~~ 69 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLI-----CDRDVYIAVSGSSKKDYLN--KSI-SEMLERTMDQRSSVLESDAKSVQ----LVN 69 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEE-----ECSSBEEEEESSCHHHHBT--CBB-CHHHHHHHHHCSCEEESSCEEEE----SBT
T ss_pred HHHHHHHHHHHHHCC-eEEE-----EcCccEEEEEecChhhcCC--Ccc-CHHHHHHHHcCCEEEEcCCcccc----ccC
Confidence 367889999999999 8888 66665677664422 2222 355 67789999999999996544311 111
Q ss_pred CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008718 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 241 ~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~ 308 (556)
...++..+.+.+| +..++.++|++.++ ...+.+++.+.++.+++|..++.+++
T Consensus 70 ~~~~~~~s~ii~P--------------I~~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qme 122 (123)
T 2w1r_A 70 GIDEDMNSYTVGP--------------IVANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQME 122 (123)
T ss_dssp TCEEEESEEEEEE--------------EEETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC----
T ss_pred CCCCCeeEEEEEE--------------EEECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3334568888999 55666889999998 44556999999999999999988774
No 77
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.43 E-value=9.7e-05 Score=73.11 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCCCC--------hhhhhccCcccCCCC----CCCCC-cceeeecc
Q 008718 512 RVQVNDSGCGVPPQD--------IPLLFTKFAQSRGSS----CQTPR-AGLGLAIC 554 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~--------~~~iF~~f~~~~~~~----~~~~G-~GlGL~i~ 554 (556)
.|+|.|||+|||.+. .+.+|..+..+..-. .-..| .|.||+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v 119 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHH
Confidence 499999999999998 677888866542111 11124 78888765
No 78
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.29 E-value=3.3e-05 Score=71.09 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.||+.||+++.. ++.+.|.+....+. ..|.|.|||+||+++.
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 578999999999862 22233333333332 2599999999999999
Q ss_pred hhhhhccCc
Q 008718 527 IPLLFTKFA 535 (556)
Q Consensus 527 ~~~iF~~f~ 535 (556)
+...|..+.
T Consensus 110 l~~~~~~ia 118 (235)
T 2ior_A 110 VIDHLGTIA 118 (235)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHc
Confidence 988775543
No 79
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.25 E-value=0.00023 Score=70.40 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhcC---CCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh--------
Q 008718 459 RLMQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI-------- 527 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~---~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~-------- 527 (556)
-+..++.+++.||++.. ....+.+.+. .++ .|+|.|||+|||.+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~--~~g---------------------~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN---------------------SVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--TTS---------------------CEEEEECSSCCCCSBCTTTSSBHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEe--CCC---------------------EEEEEECCCCcccCcccccCcchH
Confidence 57888888888888873 2334444332 222 4999999999999984
Q ss_pred hhhhccCcccCCCC----CCCCC-cceeeecc
Q 008718 528 PLLFTKFAQSRGSS----CQTPR-AGLGLAIC 554 (556)
Q Consensus 528 ~~iF~~f~~~~~~~----~~~~G-~GlGL~i~ 554 (556)
+-+|.....+..-. .-..| .|.||+.+
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~v 122 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 122 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHH
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHH
Confidence 34777554432111 01123 68887654
No 80
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.12 E-value=0.00011 Score=68.47 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||+||+++.
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 478899999998764 13344444333332 3689999999999999
Q ss_pred hhhhhccCc
Q 008718 527 IPLLFTKFA 535 (556)
Q Consensus 527 ~~~iF~~f~ 535 (556)
+...|..+.
T Consensus 131 L~~~l~~ia 139 (264)
T 1yc1_A 131 LINNLGTIA 139 (264)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHhhc
Confidence 876665443
No 81
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.85 E-value=0.00099 Score=59.42 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcC---CCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 461 MQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 461 ~~il~nLl~NAik~~---~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..++.+|+.||+++. ....+.+.+ ..+. .|+|.|||+|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g---------------------~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC---------------------EEEEEECCCCcCcccc
Confidence 788899999999883 334444443 2221 4999999999999874
No 82
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.71 E-value=0.00049 Score=63.17 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCCCChhhhhccC
Q 008718 512 RVQVNDSGCGVPPQDIPLLFTKF 534 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~f 534 (556)
.|.|.|||+||+++.+.+.|...
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~i 102 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTI 102 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC
T ss_pred EEEEEECCcCCCHHHHHHHHhhh
Confidence 68999999999999987777554
No 83
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.66 E-value=0.00026 Score=64.35 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCCCChhhhhcc
Q 008718 512 RVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
.|.|.|||+||+++.+..-|..
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ 101 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGT 101 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGS
T ss_pred EEEEEeCCCCCCHHHHHHHHHh
Confidence 6899999999999988665543
No 84
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=96.58 E-value=0.0014 Score=59.37 Aligned_cols=56 Identities=30% Similarity=0.471 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe-EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC-------h
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-------I 527 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~-------~ 527 (556)
+..-|..++.+++.||++..-.|. ..+.+....+. .|+|.|||.|||.+. .
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g---------------------~i~V~DnG~GIp~~~h~~~~~~~ 95 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG---------------------SLTVQDHGRGMPTGMHAMGIPTV 95 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEECSSCCCCSBCGGGCBHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC---------------------eEEEEEcCCCccccccccCceeh
Confidence 445688999999999998743221 22222222221 499999999999998 5
Q ss_pred hhhhc
Q 008718 528 PLLFT 532 (556)
Q Consensus 528 ~~iF~ 532 (556)
+-+|.
T Consensus 96 e~v~t 100 (226)
T 4emv_A 96 EVIFT 100 (226)
T ss_dssp HHHHH
T ss_pred heeEE
Confidence 55664
No 85
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.55 E-value=0.0025 Score=62.97 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcC-C---CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 457 EKRLMQTILNIVGNAVKFT-K---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 457 ~~~l~~il~nLl~NAik~~-~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
..-|..++.+++.||++.+ . ...+.+.+. .+++ .|+|.|||.|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~--~~~~--------------------~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PENN--------------------LISIWNNGKGIPVVE 101 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTTT--------------------EEEEEEESSCCCCSE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE--CCCC--------------------EEEEEECCCcccCcc
Confidence 3468899999999999886 1 333433332 2211 599999999999987
No 86
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.50 E-value=0.001 Score=65.16 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+..-+..++.+++.||++..- ...+.+.+ ..++ .|+|+|||.|||. +-+|
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i--~~~g---------------------~I~V~DnGrGIp~---e~v~ 79 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV--GGDG---------------------SIALFCTSRTVTA---ENLV 79 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEEEESSCCH---HHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE--eCCC---------------------EEEEEECCCCcCH---hHee
Confidence 556799999999999999732 23333333 2222 4999999999998 5566
No 87
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=96.49 E-value=0.0022 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 458 KRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..++.+++.||++..- ...+.+.+ ..++ .|+|.|||.|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g---------------------~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIH 83 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCC---------------------cEEEEECCcCcccccc
Confidence 4688888899999888742 23343333 2222 4999999999999874
No 88
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=96.48 E-value=0.003 Score=56.00 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHhhcC---CCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 456 DEKRLMQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~---~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+..-+..++.+++.||++.. ....+.+.+. .++ .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~--~~g---------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIE--KDN---------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEE--GGG---------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEe--CCC---------------------eEEEEECCCCccccc
Confidence 45678999999999999863 2344444432 221 599999999999874
No 89
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.27 E-value=0.0014 Score=60.95 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 463 il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++.+||+||.++.. .+.+.|.+....+. -.|+|.|||+||+++.+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 78899999999853 12233333333332 36899999999999997
Q ss_pred hhhhcc
Q 008718 528 PLLFTK 533 (556)
Q Consensus 528 ~~iF~~ 533 (556)
.+.|..
T Consensus 92 ~~~l~t 97 (269)
T 1qy5_A 92 VKNLGT 97 (269)
T ss_dssp HHHHHS
T ss_pred HHHhhh
Confidence 665533
No 90
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.26 E-value=0.0019 Score=60.03 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCCCChhh
Q 008718 512 RVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~ 529 (556)
.|+|.|||+||+++.+..
T Consensus 94 tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp EEEEEECSCCCCHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 689999999999988653
No 91
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.17 E-value=0.0066 Score=60.33 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhh
Q 008718 458 KRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~----~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~ 529 (556)
.-|..++.+++.||++.. ....+.+.+.. ++. .|+|.|||.|||.+..++
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~-d~~---------------------sI~V~DnGrGIPv~~h~~ 116 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA-EEH---------------------TIEVKNDGKGIPIEIHNK 116 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-TTT---------------------EEEEEEESSCCCCSBCTT
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC-CCC---------------------EEEEEECCCcccCccccc
Confidence 458889999999998764 22333333322 211 589999999999887443
No 92
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.13 E-value=0.0028 Score=65.29 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+||+||.++.. .+...|.+....+. -.|+|.|||+||+++.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 568899999999871 22223333333332 2689999999999998
Q ss_pred hhhhhcc
Q 008718 527 IPLLFTK 533 (556)
Q Consensus 527 ~~~iF~~ 533 (556)
+..-|..
T Consensus 90 l~~~l~t 96 (559)
T 1y4s_A 90 VIDHLGT 96 (559)
T ss_dssp HHHHHSC
T ss_pred HHHHHhh
Confidence 7665543
No 93
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=95.85 E-value=0.053 Score=51.04 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhhhCCceeEEEeccCCC-CeeEEEEeeccccccCcccccCChhHHHhhcccCceEecCCCchhhhhh
Q 008718 159 RHTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
++.+.+...+.+.+..+++.++||..+++. .........++ ...+..+++.+.+++.+++...+.+.....
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~---- 95 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLER---- 95 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC---------
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhc----
Confidence 345578899999999999999999987665 22222222222 124566889999999999998887532111
Q ss_pred cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Q 008718 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (556)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~ 313 (556)
.......+..+++|+ +..++...|++.+..-....++++.++++..++.+.+.+++++...
T Consensus 96 --~~~~~~sryL~viPL-------------ld~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 96 --GEQRAHSAAAVCVPL-------------VDTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ----------CCEEEEE-------------ECTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred --cccccccceEEEEEe-------------ecCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 000123466678886 4466778999999999889999999999999999999999766543
No 94
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0055 Score=64.35 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 008718 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|+|.|||+||+++.+..-+
T Consensus 74 ~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGG
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999998875544
No 95
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.50 E-value=0.0035 Score=57.59 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 008718 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|.|.|||+||+++.+..-|
T Consensus 108 ~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHH
T ss_pred EEEEecCCCCcCHHHHHHHH
Confidence 68999999999999875444
No 96
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=95.12 E-value=0.0096 Score=62.50 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
-++.+||+||.++.. ++...|.+....+. -.|+|.|||+||+++.
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 578999999999861 22233333333332 2589999999999988
Q ss_pred hhhhh
Q 008718 527 IPLLF 531 (556)
Q Consensus 527 ~~~iF 531 (556)
+..-|
T Consensus 108 l~~~l 112 (666)
T 2o1u_A 108 LVKNL 112 (666)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76544
No 97
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=94.94 E-value=0.018 Score=56.79 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCC---CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 461 ~~il~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..++.+++.||++..- ...+.+.+ ..++ .|+|.|||.|||.+..
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i--~~dg---------------------sI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTL--YKDG---------------------SCEVSDDGRGMPVDIH 98 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBC
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEE--eCCC---------------------eEEEEEcCCCCCcccc
Confidence 6677777777777642 23333332 2222 4999999999999874
No 98
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.72 E-value=0.0081 Score=54.52 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.5
Q ss_pred EEEEEEEcCCCCCCCChh
Q 008718 511 LRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~ 528 (556)
-.|+|.|||+||+++.+.
T Consensus 86 ~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp TEEEEEECSCCCCHHHHH
T ss_pred cEEEEEeCCCCCCHHHHH
Confidence 368999999999998873
No 99
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=94.29 E-value=0.77 Score=42.14 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhh----HHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeec
Q 008718 123 KNRADELDREMGLILT----QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~----~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (556)
++...+++.+...+-. .++....+.++...+-+..+.+++++.+.+.+.+.++++.+.+++.+...... .+ +.
T Consensus 78 R~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~--~~-~~ 154 (252)
T 3e98_A 78 RERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV--GR-SV 154 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS--SE-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc--hh-hc
Confidence 3344444444444333 33334456677788888899999999999999999999999999987543110 00 00
Q ss_pred cccccCcccccCChhHHHhhcccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEE
Q 008718 199 NQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVL 278 (556)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl 278 (556)
........+...+..+++..-..... ...............+...+| |..++ .+|++
T Consensus 155 -------~~~~~~~~~~~~l~~~~py~G~l~~~-e~~~lFg~~~a~~v~S~Allp--------------L~~~~-~~GlL 211 (252)
T 3e98_A 155 -------SSAEAHQAIGGLLSGGKTVCGVLRPH-ELAFLFGESDRDEIGSAAVVS--------------LSFQG-LHGVL 211 (252)
T ss_dssp -------CHHHHHHHHHHHHTTCCCSTTCCCHH-HHHHHCCCTTGGGCCEEEEEE--------------EESSS-EEEEE
T ss_pred -------cchhHHHHHHHHhCCCCceECCCCch-HHHHhcCCCccccccceEEEE--------------cCCCC-ceEEE
Confidence 00000112233333333222111111 111111110111234445556 43333 68999
Q ss_pred EeccCCCCccc-cchHHHHHHHHHHHHHHHH
Q 008718 279 MLPTDGGRKWR-DHELELIDVVADQVAVALS 308 (556)
Q Consensus 279 ~~~~~~~~~~~-~~e~~ll~~la~~~~~al~ 308 (556)
.+.+..+..|+ .....++..+|..++.++.
T Consensus 212 alGS~D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 212 AIGSPDPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp EEEESSTTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred EEcCCChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 88887766665 4678899999999988774
No 100
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.18 E-value=0.024 Score=59.20 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~il~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+||+||.++.. ++...|.+....+. -.|+|.|||+||+++.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 568899999999861 22223333333332 2689999999999998
Q ss_pred hhhhhc
Q 008718 527 IPLLFT 532 (556)
Q Consensus 527 ~~~iF~ 532 (556)
+..-|.
T Consensus 90 l~~~l~ 95 (624)
T 2ioq_A 90 VIDHLG 95 (624)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 101
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=93.35 E-value=0.016 Score=52.64 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 008718 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|+|.|||+||+++.+.+-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58999999999999887644
No 102
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=91.51 E-value=0.15 Score=57.33 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCCh
Q 008718 459 RLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..++.+.|.||++..-.| .+.|.+.. +++ .|+|.|||.|||-+..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~-~d~---------------------sisV~DnGRGIPvd~h 109 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA-EEH---------------------TIEVKNDGKGIPIEIH 109 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-TTT---------------------EEEEEECSSCCCCSBC
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC-CCC---------------------EEEEEecCCccccccc
Confidence 58888899999988854222 23333322 222 5999999999997643
No 103
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=86.43 E-value=0.27 Score=53.88 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=60.9
Q ss_pred cccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccc-------cCCCCCCcccceEEEEEeccCCCCccccc
Q 008718 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (556)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~gvl~~~~~~~~~~~~~ 291 (556)
...+.+.+++.++.+++.+....|..+.+..++|.|.+.+.-|. ..|++|++|.|++-|...+.++ .|++.
T Consensus 695 ~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~~ 772 (795)
T 4a2l_A 695 SETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNPI 772 (795)
T ss_dssp GGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCSS
T ss_pred ccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCCC
Confidence 33567889999999999999999999999999999999887764 3689999999999999988776 56554
No 104
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.23 E-value=0.3 Score=53.19 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=60.6
Q ss_pred ccCceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccc--------cCCCCCCcccceEEEEEeccCCCCccccc
Q 008718 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI--------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (556)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~--------~~~~~l~~~~~~~gvl~~~~~~~~~~~~~ 291 (556)
..+.+.+++.++.+++.+.+..|..+.+..++|.|.+.+.-|. ..|++|++|.|++-|.+.+.++ .|++.
T Consensus 661 ~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~ 738 (758)
T 3ott_A 661 YTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSNR 738 (758)
T ss_dssp GCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCSS
T ss_pred ccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccCc
Confidence 3467889999999999999999999999999999998887664 2589999999999999988776 67654
Q ss_pred h
Q 008718 292 E 292 (556)
Q Consensus 292 e 292 (556)
+
T Consensus 739 ~ 739 (758)
T 3ott_A 739 P 739 (758)
T ss_dssp C
T ss_pred c
Confidence 3
No 105
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=79.67 E-value=0.66 Score=50.62 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=58.6
Q ss_pred Cc-eEecCCCchhhhhhcccCCCCCcceeeeeccccccCccc-------cCCCCCCcccceEEEEEeccCCCCccccc
Q 008718 222 QA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (556)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~gvl~~~~~~~~~~~~~ 291 (556)
+. +.+++.++.+++.+....|..+.+..++|.|.+.+.-|. ..|++|++|.|++-|.+.+.++ .|++.
T Consensus 691 ~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~ 766 (781)
T 3v9f_A 691 EGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSED 766 (781)
T ss_dssp SSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSC
T ss_pred CccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCC
Confidence 44 789999999999999999999999999999998877654 3689999999999999988876 56654
No 106
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=69.97 E-value=7.5 Score=39.50 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=42.8
Q ss_pred hhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEecc
Q 008718 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
.+.+.+..+.+..+...++++.+..+.+.+....+.+++++|++++|..+
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 312 AELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 34455566778889999999999999999999999999999999998765
No 107
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=44.84 E-value=65 Score=32.74 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=39.3
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEecc
Q 008718 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
+++.+.......+...++.+.+..+.+.+....+.+++++|++++|.-+
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 3334455556778888888889999999999999999999999998654
No 108
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=40.18 E-value=2e+02 Score=25.45 Aligned_cols=140 Identities=8% Similarity=-0.057 Sum_probs=74.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCC---CeeEEEEeecccc---ccCcccccCChhHHHhhcccC
Q 008718 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTG---LNLELSYTLNNQI---QIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 149 ~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 222 (556)
+...+.+..+.+++.+. +..+.+.+|.+.++++...+.. ....+...+.... ....+.-..+|.+..+..+..
T Consensus 8 ~~~~l~~a~~~~~l~~~-l~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~~ 86 (237)
T 3szt_A 8 YLEILSRITTEEEFFSL-VLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYT 86 (237)
T ss_dssp HHHHHHHCCSHHHHHHH-HHHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSCS
T ss_pred HHHHHHcCCCHHHHHHH-HHHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCCC
Confidence 34456666677775544 4888899999999987654321 1222222232221 112234556788888888888
Q ss_pred ceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHH
Q 008718 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~ 302 (556)
+....+......-.+.......+....+.+|+... +...|++.+.... ..+++.+...+......
T Consensus 87 p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~--------------~g~~g~ls~~~~~-~~~~~~~~~~~~~~~~~ 151 (237)
T 3szt_A 87 PLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGK--------------YGLISMLSLVRSS-ESIAATEILEKESFLLW 151 (237)
T ss_dssp CEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEECG--------------GGCEEEEEEEESS-SCCCHHHHHHHHHHHHH
T ss_pred CEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeCC--------------CCCeEEEEEecCC-CcCCHHHHHHHHHHHHH
Confidence 88776543211111111111233345666774332 2235555555444 25666666555444444
Q ss_pred HH
Q 008718 303 VA 304 (556)
Q Consensus 303 ~~ 304 (556)
++
T Consensus 152 l~ 153 (237)
T 3szt_A 152 IT 153 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 109
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.09 E-value=64 Score=20.24 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=5.3
Q ss_pred ccCCCCCCCh
Q 008718 5 DCIDTQWPPD 14 (556)
Q Consensus 5 ~~~~~~~~~~ 14 (556)
+|.+..++..
T Consensus 2 gCp~~~s~~~ 11 (44)
T 2ks1_B 2 GCPTNGPKIP 11 (44)
T ss_dssp CCCCCCSCSS
T ss_pred CCCCCCCCcc
Confidence 4655445555
No 110
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=32.89 E-value=2.2e+02 Score=23.88 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008718 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 268 l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~ 308 (556)
+..++...|.+++.... ..|+.+|+-+++..|..++.-+-
T Consensus 126 I~g~GeRLGTLvl~r~~-~~F~ddDLILaEyaATVVGlEIL 165 (170)
T 2gx5_A 126 IIGGGERLGTLILSRLQ-DQFNDDDLILAEYGATVVGMEIL 165 (170)
T ss_dssp EEETTEEEEEEEEEESS-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCeEEEEEEEEecC-CCCChhHHHHHHHHHHHHHHHHH
Confidence 45556668888776543 37999999999999999988773
No 111
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.20 E-value=67 Score=20.16 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=11.5
Q ss_pred hhhHHHHHH-HHhHHHHHHHHHHhcC
Q 008718 23 ISDILIALA-YFSIPVELIYFVQKSA 47 (556)
Q Consensus 23 ~s~~~ia~a-~~~ip~~~~~~~~~~~ 47 (556)
+.-..+++. .+.+.+.++.|+|||+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhh
Confidence 333344433 3344445455555554
No 112
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=23.77 E-value=3.3e+02 Score=22.98 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhH
Q 008718 345 NDFRAVMNHEMRTL 358 (556)
Q Consensus 345 ~~l~~~i~Hel~~p 358 (556)
..+...+.|.|...
T Consensus 33 ~~l~~~l~~~L~~i 46 (218)
T 3ehh_A 33 RDLVDTLGQKLSLM 46 (218)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHH
Confidence 34455555555433
No 113
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=22.08 E-value=64 Score=16.73 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhhHH
Q 008718 57 QFGSFIILCGLTHF 70 (556)
Q Consensus 57 ~~~~fi~~~g~~h~ 70 (556)
+.+.||+-|.+-|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 45678888887663
Done!