Query 008718
Match_columns 556
No_of_seqs 356 out of 3650
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 10:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c2aa2 d.122.1.3 (A:321-481) 99.9 2.3E-24 1.7E-28 186.7 12.3 125 412-556 2-131 (161)
2 d1id0a_ d.122.1.3 (A:) Histidi 99.9 1.8E-22 1.3E-26 171.2 11.8 116 415-556 2-117 (146)
3 d1ysra1 d.122.1.3 (A:299-446) 99.9 1.2E-22 8.4E-27 173.0 10.5 117 414-556 3-119 (148)
4 d1bxda_ d.122.1.3 (A:) Histidi 99.8 2.6E-21 1.9E-25 166.9 13.0 119 411-556 4-122 (161)
5 d1r62a_ d.122.1.3 (A:) Nitroge 99.8 1.2E-20 9.1E-25 162.3 5.9 126 416-556 3-128 (156)
6 d1ixma_ d.123.1.1 (A:) Sporula 99.8 1.6E-18 1.2E-22 153.2 14.9 163 344-551 9-179 (179)
7 d1gkza2 d.122.1.4 (A:186-378) 99.8 2.3E-19 1.7E-23 160.6 6.5 119 416-556 9-160 (193)
8 d1jm6a2 d.122.1.4 (A:1177-1366 99.7 5.6E-19 4.1E-23 156.6 7.2 121 416-556 10-151 (190)
9 d1mc0a1 d.110.2.1 (A:215-401) 99.4 1.8E-12 1.3E-16 114.6 16.3 164 143-320 5-169 (187)
10 d2c2aa1 a.30.2.1 (A:232-320) S 99.3 7.5E-12 5.4E-16 95.4 10.4 73 337-409 13-88 (89)
11 d1y8oa2 d.122.1.4 (A:177-301) 99.3 5.9E-12 4.3E-16 103.2 8.7 96 416-531 14-125 (125)
12 d1mc0a2 d.110.2.1 (A:402-555) 99.2 2.7E-11 1.9E-15 103.0 11.9 148 158-318 1-151 (154)
13 d2hkja3 d.122.1.2 (A:10-228) T 99.2 7.8E-12 5.7E-16 112.7 6.0 83 456-555 19-107 (219)
14 d1th8a_ d.122.1.3 (A:) Anti-si 99.1 3.7E-11 2.7E-15 99.8 6.4 74 458-556 38-115 (139)
15 d2k2na1 d.110.2.1 (A:31-200) S 99.0 5E-09 3.6E-13 90.3 14.6 140 159-312 1-170 (170)
16 d1vhma_ d.110.2.1 (A:) Hypothe 98.9 1.5E-08 1.1E-12 85.9 15.5 144 146-311 10-154 (159)
17 d1joya_ a.30.2.1 (A:) EnvZ his 98.9 1.4E-09 1E-13 77.0 5.8 58 342-404 10-67 (67)
18 d2oola1 d.110.2.1 (A:140-333) 98.8 1.3E-07 9.2E-12 82.8 17.9 156 139-308 3-187 (194)
19 d2o9ca1 d.110.2.1 (A:135-321) 98.8 5E-08 3.7E-12 84.5 14.8 152 144-309 4-184 (187)
20 d3c2wa1 d.110.2.1 (A:118-309) 98.6 4.1E-07 3E-11 79.3 15.8 149 145-308 9-186 (192)
21 d2veaa1 d.110.2.1 (A:131-326) 98.6 5.1E-07 3.7E-11 78.8 14.8 150 144-307 8-186 (196)
22 d1f5ma_ d.110.2.1 (A:) Hypothe 98.6 5.1E-07 3.7E-11 77.5 14.2 136 153-306 33-173 (176)
23 d1i58a_ d.122.1.3 (A:) Histidi 97.8 4.2E-06 3E-10 72.5 3.6 37 520-556 125-161 (189)
24 d1h7sa2 d.122.1.2 (A:29-231) D 97.8 1.4E-05 1E-09 69.8 6.4 58 460-539 7-64 (203)
25 d1b63a2 d.122.1.2 (A:-2-216) D 97.7 2.1E-05 1.5E-09 69.3 6.7 59 460-540 25-83 (218)
26 d1kija2 d.122.1.2 (A:9-220) DN 96.3 0.0014 1E-07 56.9 4.6 50 456-526 23-73 (212)
27 d1pvga2 d.122.1.2 (A:7-245) DN 95.9 0.0055 4E-07 53.8 6.5 77 458-554 52-143 (239)
28 d1ei1a2 d.122.1.2 (A:2-220) DN 95.8 0.0052 3.8E-07 53.2 5.6 76 458-554 33-122 (219)
29 d2iwxa1 d.122.1.1 (A:2-214) HS 95.7 0.0014 1E-07 56.6 1.3 21 512-532 73-93 (213)
30 d1s14a_ d.122.1.2 (A:) Topoiso 95.2 0.0037 2.7E-07 51.3 2.4 47 459-526 5-52 (168)
31 d1uyla_ d.122.1.1 (A:) HSP90 { 94.9 0.0079 5.8E-07 51.6 3.7 18 512-529 72-89 (208)
32 d2gqpa1 d.122.1.1 (A:74-337) H 94.6 0.01 7.4E-07 51.5 3.7 20 512-531 71-90 (227)
No 1
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.91 E-value=2.3e-24 Score=186.70 Aligned_cols=125 Identities=26% Similarity=0.419 Sum_probs=101.1
Q ss_pred ccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEeee
Q 008718 412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVA 487 (556)
Q Consensus 412 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~----~~i~~~~~ 487 (556)
++.+++|+.++++++++.++..+..+++++.++.+.+.+..+.+|+.++.||+.||++||+||+++|+ +.+.....
T Consensus 2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~ 81 (161)
T d2c2aa2 2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 81 (161)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence 56679999999999999999999999999999887766666788999999999999999999998764 33333222
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCC-CCCCcceeeecccC
Q 008718 488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
++ ++.|+|+|||+|||++.+++||+|||+.+...+ ...|+||||++||+
T Consensus 82 -~~-------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~ 131 (161)
T d2c2aa2 82 -DG-------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE 131 (161)
T ss_dssp -TT-------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHH
T ss_pred -CC-------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHH
Confidence 22 499999999999999999999999999876543 34599999999984
No 2
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=1.8e-22 Score=171.22 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=98.4
Q ss_pred cceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCC
Q 008718 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (556)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~ 494 (556)
+..++.++++++++.+...++.+++++.++.++.. .+.+|+..+.+++.||++||+||+++ ++.+.....++
T Consensus 2 e~~~l~~ll~~~~~~~~~~~~~k~i~i~~~~~~~~--~~~~d~~~l~~vl~NLl~NAik~~~~-~i~i~~~~~~~----- 73 (146)
T d1id0a_ 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (146)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CccCHHHHHHHHHHHHHHHHHHCCCEEEEEcCCCc--EEEECHHHHHHHHHHHHHHHHHhhcC-CEEEEEEeeCC-----
Confidence 35678999999999999999999999999876654 47789999999999999999999985 45555544333
Q ss_pred CCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.++++|+|||+.+.. .+|+||||+|||+
T Consensus 74 ---------------~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~---~~G~GLGL~I~k~ 117 (146)
T d1id0a_ 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTL---RPGQGVGLAVARE 117 (146)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCC---CTTCCSCHHHHHH
T ss_pred ---------------EEEEEEEeeCCCCCHHHHHHHcCCcccCCCC---CCCeeHHHHHHHH
Confidence 2999999999999999999999999987644 2699999999984
No 3
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.87 E-value=1.2e-22 Score=172.96 Aligned_cols=117 Identities=22% Similarity=0.377 Sum_probs=87.7
Q ss_pred ccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCC
Q 008718 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLS 493 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~ 493 (556)
..|+||.++++++++.+....+ +..+++.. +.+..+.+|+..|.|++.||++||+||++++.+.+.....++
T Consensus 3 ~~pvdl~~l~~~~~~~~~~~~~--~~~i~~~~--~~~~~v~~d~~~l~~vl~NLl~NAiky~~~~~I~i~~~~~~~---- 74 (148)
T d1ysra1 3 HVPVDITDLLDRAAHDAARIYP--DLDVSLVP--SPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA---- 74 (148)
T ss_dssp CEEEEHHHHHHHHHHHHHHHST--TCEEEECS--CCCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT----
T ss_pred CCcccHHHHHHHHHHHHHHHcC--CCcEEEec--CCCcEEEECHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCC----
Confidence 3589999999999999987654 44555543 334468889999999999999999999988766665554433
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 494 DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 494 ~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.++++|+|||+.+.. +..|+||||+|||+
T Consensus 75 ----------------~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~~--~~~G~GLGL~i~~~ 119 (148)
T d1ysra1 75 ----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVAQ 119 (148)
T ss_dssp ----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHH
T ss_pred ----------------EEEEEEEEcCCCCCHHHHHHhcCccccCCCC--CCCCccHHHHHHHH
Confidence 3999999999999999999999999985433 24599999999984
No 4
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=99.85 E-value=2.6e-21 Score=166.86 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=94.3
Q ss_pred cccccceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCC
Q 008718 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~ 490 (556)
+++.+.+||++++++++..+... .+ .+.+.+++... .+.+|+..|.+++.||++||+||++ +.+.+......+
T Consensus 4 el~~e~~dl~~ll~e~i~~~~~~--~~--~i~~~~~~~~~-~v~~d~~~l~~vl~NLi~NAik~~~-~~i~i~~~~~~~- 76 (161)
T d1bxda_ 4 EMPMEMADLNAVLGEVIAAESGY--ER--EIETALYPGSI-EVKMHPLSIKRAVANMVVNAARYGN-GWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCSS--SC--CEEEECCSSCC-CEEECHHHHHHHHHHHHHHHHTTCC-SCEEEEEEEETT-
T ss_pred CCCcccCcHHHHHHHHHHHhhcc--cC--cEEEEecCCCe-EEEECHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEeCC-
Confidence 56678999999999999876543 23 44555555443 4778999999999999999999985 556666554443
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.+++||+|||+.+... ..+|+||||+|||+
T Consensus 77 -------------------~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~-~~~g~GLGL~ivk~ 122 (161)
T d1bxda_ 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQR 122 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHH
T ss_pred -------------------EEEEEEEEcCCCCCHHHHHHHhCCceECCCCC-cCCCCCchHHHHHH
Confidence 39999999999999999999999999876543 34689999999984
No 5
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.80 E-value=1.2e-20 Score=162.27 Aligned_cols=126 Identities=25% Similarity=0.343 Sum_probs=78.4
Q ss_pred ceeHHHHHHHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCC
Q 008718 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDW 495 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~ 495 (556)
..++++++++++..++...+ +++.+..+++++.+. +.+|+.+|.|++.||+.||++|+..++...........
T Consensus 3 ~~~i~evie~v~~l~~~~~~-~~i~i~~~~~~~~~~-v~~D~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~----- 75 (156)
T d1r62a_ 3 TESIHKVAERVVTLVSMELP-DNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF----- 75 (156)
T ss_dssp EECHHHHHHHHHHHHTTTCC-TTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE-----
T ss_pred cccHHHHHHHHHHHHHHHcc-CCCEEEEEcCCCCCE-EEECHHHHHHHHHHHHHHHHHhhhcCCCceeeeccccc-----
Confidence 46889999999998887664 688999998887775 66799999999999999999998765443322211110
Q ss_pred CCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 496 RPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 496 ~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.......+.++.|+|.|||+|||++.++++|+|||+++. .|+||||++||+
T Consensus 76 ---~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k~-----~G~GLGL~i~~~ 128 (156)
T d1r62a_ 76 ---QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARN 128 (156)
T ss_dssp ---EEEETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHH
T ss_pred ---eeeeccccCCceEEEEEecCCCCCCHHHHHhhcccceecCC-----CCCCchHHHHHH
Confidence 00111122344699999999999999999999999998763 489999999984
No 6
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=99.77 E-value=1.6e-18 Score=153.25 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccccceeHHHHH
Q 008718 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll 423 (556)
+.+|++.++||++|||++|.|++++... ++..++++.+.. ......+..... .. ..
T Consensus 9 ~~~~l~~~~Hdl~npL~~I~g~l~L~~~----~~~~~~i~~i~~----------~~~~~~~~~~~~------~~----~~ 64 (179)
T d1ixma_ 9 LIHLLGHSRHDWMNKLQLIKGNLSLQKY----DRVFEMIEEMVI----------DAKHESKLSNLK------TP----HL 64 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHH----------HHHHHHHHHTTT------CH----HH
T ss_pred HHHHHHHhhHhhcCHHHHHHHHHHcccc----ccchhHHHHHHH----------hhhccccccccc------cc----cc
Confidence 5578899999999999999999875221 122223322222 222222211110 00 00
Q ss_pred HHHHHHHHhhhhcCCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC---eEEEEEeeeCCCCCCCCCCCCC
Q 008718 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g---~~~i~~~~~~~~~~~~~~~~~~ 500 (556)
. ............+.+.+......+. +.+++..+.|++.|++.||++|+... ...+.+.....++
T Consensus 65 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~~~--------- 132 (179)
T d1ixma_ 65 A--FDFLTFNWKTHYMTLEYEVLGEIKD-LSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDR--------- 132 (179)
T ss_dssp H--HHHHHGGGSCCSSEEEEEEESSCCC-CTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSS---------
T ss_pred c--ccccchhhhccccccccccccccch-hhhhhhhhHHHHHHHHHHHHHHhhhccccchhhhhhhccccc---------
Confidence 1 1112222334566666666555443 55699999999999999999998542 2334443333322
Q ss_pred CCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCC-----CCCCCCcceee
Q 008718 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS-----SCQTPRAGLGL 551 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~-----~~~~~G~GlGL 551 (556)
++.|+|.|||+||||+.+++||++||+..+. .....|.|+||
T Consensus 133 ---------~~~i~v~D~G~gi~~e~l~~if~~~y~~~~~~~~~~~~~~~~~~~~~ 179 (179)
T d1ixma_ 133 ---------QLILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECLIEIGL 179 (179)
T ss_dssp ---------SCEEEEEEESCBSCGGGCC-----------EEEEEECSSEEEEEEEC
T ss_pred ---------EEEEEEEeCCCCcCHHHHHHHHHhccccccceEEEeecCceeEeeCC
Confidence 3999999999999999999999999986542 22233566665
No 7
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.76 E-value=2.3e-19 Score=160.62 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=87.2
Q ss_pred ceeHHHHHHHHHHHHHhhhhc---CCceEEEEeCCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC---------eEEEE
Q 008718 416 PFNLQIVLREVIKLIKPVASC---KKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSII 483 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g---------~~~i~ 483 (556)
.+++.++++++++.++..+.. ..+.+.++.+++. .+.+|+.+|.|++.||+.||+||++++ .+.+.
T Consensus 9 ~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~~~--~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~ 86 (193)
T d1gkza2 9 RLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA--RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVIT 86 (193)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC--CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCc--eeeecHHHHHHHHHHHHHHHHHhcccCceeeccccceEEEE
Confidence 578899999998887765432 3445666655543 366799999999999999999996422 23333
Q ss_pred EeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCC--------------------
Q 008718 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-------------------- 543 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~-------------------- 543 (556)
.... ++ ++.|+|+|||+|||++.+++||+|||+++.....
T Consensus 87 ~~~~-~~-------------------~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (193)
T d1gkza2 87 IANN-DV-------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSG 146 (193)
T ss_dssp EEEC-SS-------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------
T ss_pred EEcc-CC-------------------EEEEEEecCCCCCCHHHHHHhcCCceeccccccccccccccccccccccccccc
Confidence 3222 22 4999999999999999999999999998765321
Q ss_pred -CCCcceeeecccC
Q 008718 544 -TPRAGLGLAICRR 556 (556)
Q Consensus 544 -~~G~GlGL~i~k~ 556 (556)
..|+||||++||+
T Consensus 147 ~~~G~GlGL~i~k~ 160 (193)
T d1gkza2 147 PMHGFGFGLPTSRA 160 (193)
T ss_dssp CCSCSSCHHHHHHH
T ss_pred ccccCCcCHHHHHH
Confidence 2389999999984
No 8
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.74 E-value=5.6e-19 Score=156.63 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=86.6
Q ss_pred ceeHHHHHHHHHHHHHhhhh-----cCCceEEEEe--CCCCCceeEccHHHHHHHHHHHHHHHhhcCCCC--------eE
Q 008718 416 PFNLQIVLREVIKLIKPVAS-----CKKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG--------YV 480 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~-----~~~i~~~~~~--~~~~~~~~~~d~~~l~~il~nLl~NAik~~~~g--------~~ 480 (556)
.+|+.++++++.+..+.... ...+.+.... ....+..+.+|+.+|.|++.||+.||+||++++ .+
T Consensus 10 ~~~l~~ii~da~e~~r~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I 89 (190)
T d1jm6a2 10 NCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPI 89 (190)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhccCcccceEEEeccCCCCCEEEEECHHHHHHHHHHHHHHHHHHhhccCccccccceE
Confidence 57888999888887654332 2233433222 233444567799999999999999999997432 13
Q ss_pred EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCCCCCCC------CCcceeeecc
Q 008718 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT------PRAGLGLAIC 554 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~------~G~GlGL~i~ 554 (556)
.+...... + .+.|+|+|||+|||++.+++||+|||+++....+. .|+||||++|
T Consensus 90 ~v~~~~~~-~-------------------~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~ 149 (190)
T d1jm6a2 90 KIMVALGE-E-------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPIS 149 (190)
T ss_dssp EEEEEECS-S-------------------EEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------CCSSCHHHHH
T ss_pred EEEEEeCC-e-------------------EEEEEEeccCCCCCHHHHHHHhCcceecCCcCcCcccccccCCCCccHHHH
Confidence 33333322 2 49999999999999999999999999987664322 4999999999
Q ss_pred cC
Q 008718 555 RR 556 (556)
Q Consensus 555 k~ 556 (556)
|+
T Consensus 150 k~ 151 (190)
T d1jm6a2 150 RL 151 (190)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 9
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.42 E-value=1.8e-12 Score=114.62 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccC
Q 008718 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 143 ~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (556)
.+.+.++...+. .+|.+++++.+++.+.+.+++++|+||++|++...+......+........+|.+.+.++.++.+++
T Consensus 5 ~~~ll~l~~~l~-~ld~~~l~~~il~~~~~~~~ad~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~ 83 (187)
T d1mc0a1 5 DRKILQLCGELF-DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ 83 (187)
T ss_dssp HHHHHHHHHTCC-CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCceEEEEEeccCCcccceeecCCccHHHHHHHhhh
Confidence 344555666664 4799999999999999999999999999998888877665555444444567888899999999999
Q ss_pred ceEecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec-cCCCCccccchHHHHHHHHH
Q 008718 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRKWRDHELELIDVVAD 301 (556)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~-~~~~~~~~~~e~~ll~~la~ 301 (556)
+..+++...+..+.... .......+.+++|+.. ..++.++|++.+. ...++.|+++|.+++..+|.
T Consensus 84 ~~~i~d~~~d~~~~~~~-~~~~~~~s~l~vPl~~------------~~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~~a~ 150 (187)
T d1mc0a1 84 CIQLKDLTSDDVQQLQN-MLGCELQAMLCVPVIS------------RATDQVVALACAFNKLGGDFFTDEDEHVIQHCFH 150 (187)
T ss_dssp CEEGGGSCHHHHHHHHH-HHCSCCCCEEEEEEEC------------TTTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHH
T ss_pred hhhhhccccccccccch-hhhhhHHHHHhhhhhc------------cccccceEEEEEEcccccchhhhHHHHHHHHHHH
Confidence 99999998877665322 2234566778888621 2366789998654 45568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008718 302 QVAVALSHAAILEDSMRAR 320 (556)
Q Consensus 302 ~~~~al~~a~~~~~~~~~~ 320 (556)
+++++++|++++++.++.+
T Consensus 151 ~~a~ai~na~l~~~~~~~~ 169 (187)
T d1mc0a1 151 YTGTVLTSTLAFQKEQKLK 169 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765544
No 10
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.29 E-value=7.5e-12 Score=95.39 Aligned_cols=73 Identities=29% Similarity=0.438 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 008718 337 AEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS 409 (556)
Q Consensus 337 ~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~ 409 (556)
+++.++.+.+|++.+||||||||++|.|+++.+.+. ..++..+++++.+.++++++..+++++++++++++|.
T Consensus 13 l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle~g~ 88 (89)
T d2c2aa1 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKS 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455667788999999999999999999999999764 3455678899999999999999999999999998774
No 11
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.26 E-value=5.9e-12 Score=103.19 Aligned_cols=96 Identities=23% Similarity=0.346 Sum_probs=66.9
Q ss_pred ceeHHHHHHHHHHHHHhhhhcC-----CceEEEE--eCCCCCceeEccHHHHHHHHHHHHHHHhhcCC--------C-Ce
Q 008718 416 PFNLQIVLREVIKLIKPVASCK-----KLSMTLI--MAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--------E-GY 479 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~--~~~~~~~~~~~d~~~l~~il~nLl~NAik~~~--------~-g~ 479 (556)
.+++.++++++++..+...... ....... ..++.+..+.+|+.+|.|++.||++||++|+. . +.
T Consensus 14 ~~~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~ 93 (125)
T d1y8oa2 14 TCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPA 93 (125)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhhheeeeCCCCCeEEeeCHHHHHHHHHHHHHHHHHhhhccccccCCCcee
Confidence 5688888888888776544321 1121111 23445556888999999999999999999963 1 22
Q ss_pred EEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+.+.... .++ ++.|+|+|||+|||++.+++||
T Consensus 94 I~i~~~~-~~~-------------------~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 94 VKTLVTL-GKE-------------------DLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp EEEEEEE-CSS-------------------EEEEEEEECSCCCCHHHHGGGG
T ss_pred EEEEeec-CCC-------------------EEEEEEEEeCCCcCHHHHcccC
Confidence 3333222 222 5999999999999999999998
No 12
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.23 E-value=2.7e-11 Score=102.99 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc-cccCcccccCChhHHHhhcccCceEecCCCchhhhh
Q 008718 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIR 236 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
|++++++++++.+.+.+++++|+||++|+++......++.... ......+|...+....+..+++++.+.+........
T Consensus 1 Dld~ll~~i~~~~~~~~~ad~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1mc0a2 1 DVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFY 80 (154)
T ss_dssp CHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHHHHHHHHCCCEEESCSTTCTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEECCccEEEEEEeccccccccceeecCCccchhheeccCcEEEEEecccccccc
Confidence 6789999999999999999999999999876655555443332 334445777888999999999999988776554332
Q ss_pred hc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEe-ccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008718 237 LL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 237 ~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~-~~~~~~~~~~~e~~ll~~la~~~~~al~~a~~~~ 314 (556)
.. ..............|+ ...++..+|++.+ +...++.|++.|+++++.+|+++|+||+|+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~~~f~~~d~~ll~~la~q~aiAi~na~l~~ 147 (154)
T d1mc0a2 81 RGVDDSTGFRTRNILCFPI-------------KNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 147 (154)
T ss_dssp CTTHHHHTCCCCCEEEEEE-------------ECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcccceeEEEEec-------------ccccceeeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111122233334443 3445555666654 4557889999999999999999999999999998
Q ss_pred HHHH
Q 008718 315 DSMR 318 (556)
Q Consensus 315 ~~~~ 318 (556)
+.++
T Consensus 148 ~l~~ 151 (154)
T d1mc0a2 148 KVNE 151 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 13
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.18 E-value=7.8e-12 Score=112.71 Aligned_cols=83 Identities=24% Similarity=0.382 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----eEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....|.+++.|||+||++|+..+ .+.+.+.....+ ..++.|.|.|||+|||++.++++|
T Consensus 19 ~~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~-----------------~~~~~i~V~DnG~Gi~~~~~~~~f 81 (219)
T d2hkja3 19 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 81 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEEECSCCCCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecCC-----------------CCEEEEEEEcCCCCCCHHHHHhhc
Confidence 44569999999999999997643 233333322221 114899999999999999999999
Q ss_pred ccCcccCCCCCC--CCCcceeeeccc
Q 008718 532 TKFAQSRGSSCQ--TPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~~~--~~G~GlGL~i~k 555 (556)
++|++.+..... .+|.|+||++|+
T Consensus 82 ~~~~~s~~~~~~~~~G~~GlGl~~~~ 107 (219)
T d2hkja3 82 GRVLYSSKYVNRQTRGMYGLGVKAAV 107 (219)
T ss_dssp HCCCSSCCCCCSCCSCSCTTTHHHHH
T ss_pred cceEeccccccccccCccCHHHHHHH
Confidence 999987654332 346899999875
No 14
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.11 E-value=3.7e-11 Score=99.81 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 008718 458 KRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
..+..++.|+++||++|+. .+.+.+.....++ ++.|+|+|||+|||+ .+++|+|
T Consensus 38 ~di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~--------------------~l~i~i~D~G~gi~~--~~~~~~~ 95 (139)
T d1th8a_ 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIPD--IEEARQP 95 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCSC--HHHHTCC
T ss_pred HHHHHHHHHhhhhhhheecCCCCCcEEEEEEEEecC--------------------EEEEEEccccccccc--ccccccc
Confidence 4588999999999999972 2445555555443 399999999999975 6889999
Q ss_pred CcccCCCCCCCCCcceeeecccC
Q 008718 534 FAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|++..... .++|+||+++|+
T Consensus 96 ~~~~~~~~---~~~GlGL~iv~~ 115 (139)
T d1th8a_ 96 LFTTKPEL---ERSGMGFTIMEN 115 (139)
T ss_dssp C----------CCCSCHHHHHHH
T ss_pred cceecccC---CCchHHHHHHHH
Confidence 98765432 467999999873
No 15
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
Probab=98.97 E-value=5e-09 Score=90.27 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccc-c--ccCccccc--CChhHHHhhcccCceEecCCCchh
Q 008718 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-I--QIGSSVPI--NLPIVTDVFNSAQAMRLPYNCPLA 233 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 233 (556)
++++++++++++++.+++|||.||.+++++.....+.....+ . ..|..++. ........+..++...+++.....
T Consensus 1 L~~il~~av~el~~~l~~dRv~iy~f~~d~~~~vvae~~~~~~~~s~lg~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~ 80 (170)
T d2k2na1 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (170)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEECCCCCccccCCcccccccHHHHHHHHHcCCeEEEeccccCC
Confidence 468999999999999999999999999888776666555432 2 23333333 223446677777777776554321
Q ss_pred hhhhcccCC-------------------------CCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcc
Q 008718 234 RIRLLVGRY-------------------------VPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (556)
Q Consensus 234 ~~~~~~~~~-------------------------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~ 288 (556)
.-....... ..+.++.+.+| +..++...|++.++...+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~s~l~vP--------------i~~~~~lwGlL~~h~~~~r~W 146 (170)
T d2k2na1 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------------LMHHQELWGLLVSHHAEPRPY 146 (170)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECC--------------CSCSSCCCEEEEEEECSCCCC
T ss_pred eeeccccccccCCcccccchhhccCcHHHHHHHHcccccceEEEe--------------eecCCceEEEEEEecCCCCcC
Confidence 100000000 01233444555 444555677888777789999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 008718 289 RDHELELIDVVADQVAVALSHAAI 312 (556)
Q Consensus 289 ~~~e~~ll~~la~~~~~al~~a~~ 312 (556)
++.|+++++.+|+++++||++|.+
T Consensus 147 ~~~Ei~ll~~iA~qlaiAI~qa~L 170 (170)
T d2k2na1 147 SQEELQVVQLLADQVSIAIAQAEL 170 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999987764
No 16
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}
Probab=98.92 E-value=1.5e-08 Score=85.86 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=112.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhh-CCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCce
Q 008718 146 VRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAM 224 (556)
Q Consensus 146 l~~~~~~l~~~l~~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (556)
..++...+....++..++..++..+.+.+ +.+.|.+|+.+++...+.. +.. ......+|...+.++.++.+++++
T Consensus 10 ~~~i~~ll~~e~dl~~~L~~i~~~l~~~~~~~~~~~~yl~d~~~~~l~~-~~~---~~~~~~i~~g~g~~g~v~~~~~~~ 85 (159)
T d1vhma_ 10 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP-FQG---KIACVRIPVGRGVCGTAVARNQVQ 85 (159)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETTEEEEEE-EEE---SCCCSEEETTSHHHHHHHHHTSCE
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHhhccCceEEEEEEECCEeeeee-ecC---CcceeEEecCCChHHHHHHcCCcE
Confidence 34555556667788889999999888877 5677889998865443322 221 123346788899999999999999
Q ss_pred EecCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHH
Q 008718 225 RLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (556)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~ 304 (556)
.+++...++++. ....+.++.+++| +..++.++|++.+.+..++.|+++|.++++.+|.+++
T Consensus 86 ~v~d~~~d~~~~----~~~~~~~S~l~vP--------------l~~~~~viGvl~v~s~~~~~F~~~d~~ll~~la~qia 147 (159)
T d1vhma_ 86 RIEDVHVFDGHI----ACDAASNSEIVLP--------------LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 147 (159)
T ss_dssp EESCTTTCTTCC----CSCCCCSEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHH
T ss_pred EecChHHhhhhh----hcccccceeEEeC--------------EEECCEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999988877543 2345667889999 5567788999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008718 305 VALSHAA 311 (556)
Q Consensus 305 ~al~~a~ 311 (556)
.+|+++.
T Consensus 148 ~ai~~~~ 154 (159)
T d1vhma_ 148 KVLATTD 154 (159)
T ss_dssp HHHHTSS
T ss_pred HHHHccc
Confidence 9998764
No 17
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=98.86 E-value=1.4e-09 Score=77.02 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008718 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+.+.+|++++||||||||+.|.++++.+.+ +..++++.+.++++++..+|+++++|+|
T Consensus 10 ~~~~~f~~~vsHeLRTPLt~i~~~~e~l~~-----~~~~~~~~i~~~~~rm~~li~dlL~~aR 67 (67)
T d1joya_ 10 DDRTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDYLR 67 (67)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 346789999999999999999999999864 2346788899999999999999999975
No 18
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=98.80 E-value=1.3e-07 Score=82.82 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=103.5
Q ss_pred HHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcc--ccc--CChhH
Q 008718 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPI--NLPIV 214 (556)
Q Consensus 139 ~~~~~~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~ 214 (556)
.++..+.+++++..|++++|++++++++++++++.+++|||.||.+++++.....+.......+.-.+ .+. .....
T Consensus 3 ~~~~~r~l~~i~~~Ir~sldl~~Il~tav~eir~~L~~DRv~Iy~f~~~~~~~vvaEs~~~~~~s~lg~~~~~~~~~~~~ 82 (194)
T d2oola1 3 TNEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQS 82 (194)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCcEEEEeecCCCCCcccCCccChHHHHHHH
Confidence 45567789999999999999999999999999999999999999999888776666555544332222 211 22334
Q ss_pred HHhhcccCceEecCCCchhh-h--------------hhcccCCC----------CCcceeeeeccccccCccccCCCCCC
Q 008718 215 TDVFNSAQAMRLPYNCPLAR-I--------------RLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELP 269 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~ 269 (556)
......+....+++...... + ........ .+-++.+.+| +.
T Consensus 83 ~~~~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vkA~L~vP--------------I~ 148 (194)
T d2oola1 83 RALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSIS--------------IV 148 (194)
T ss_dssp HHHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EE
T ss_pred HHHHhcCceEEeeeccCCcceeecccccccCCCccccchhhccCCHHHHHHHHhCCCceEEEee--------------hh
Confidence 45556666666665433211 0 00000000 1234556666 44
Q ss_pred cccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008718 270 AKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 270 ~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~ 308 (556)
.++...|++.++...++.|+.++....+.++..++.++.
T Consensus 149 ~~~~LWGlL~~hq~~pr~~~~~~~~~~e~l~q~~a~ql~ 187 (194)
T d2oola1 149 RDNRLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQIG 187 (194)
T ss_dssp ETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455567788887778899998888777777777776663
No 19
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=98.79 E-value=5e-08 Score=84.50 Aligned_cols=152 Identities=5% Similarity=-0.030 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccC--ccccc--CChhHHHhhc
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG--SSVPI--NLPIVTDVFN 219 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~ 219 (556)
.+++.++..|++++|++++++++++++++.+++|||.||.+++++.....+....+...+. ..+|. ........+.
T Consensus 4 ~~l~~~~~~ir~s~dl~~Il~tav~evr~~L~~DRV~IYrf~~d~~g~vvaEs~~~~~~S~lg~~~p~~~~~~~~~~~~~ 83 (187)
T d2o9ca1 4 HALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYT 83 (187)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCEeEEEEECCCCCEEEEEEEECCCCCCCCCCccChHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999998887766665555443322 23332 2334455566
Q ss_pred ccCceEecCCCchhh-hhh---------c--ccC-------------CCCCcceeeeeccccccCccccCCCCCCcccce
Q 008718 220 SAQAMRLPYNCPLAR-IRL---------L--VGR-------------YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (556)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~~---------~--~~~-------------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (556)
.++...+.+...... +.. . +.. ...+-++.+.+|+ ..++..
T Consensus 84 ~~~~~~i~dv~~~~~~l~~~~~~~~~~~~dl~~~~l~~~s~~~~~~L~~~~vkA~L~vPI--------------~~~~~L 149 (187)
T d2o9ca1 84 RHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSV--------------VVGGQL 149 (187)
T ss_dssp HSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEE--------------EETTEE
T ss_pred cCCeEEEeecccCccccccccccccCCCcccccchhccccHHHHHHHHhcCCCeEEEEEE--------------EECCee
Confidence 666666655432210 000 0 000 0123456667773 445556
Q ss_pred EEEEEeccCCCCccccchHHHHHHHHHHHHHHHHH
Q 008718 275 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (556)
Q Consensus 275 ~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~~ 309 (556)
.|++.++...+|.|..+++.+.+.++.+++++|+.
T Consensus 150 WGLL~~H~~~pr~~~~~~r~~~e~l~~~ls~~l~~ 184 (187)
T d2o9ca1 150 WGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQV 184 (187)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 77888787789999999999999999999988854
No 20
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.64 E-value=4.1e-07 Score=79.29 Aligned_cols=149 Identities=8% Similarity=-0.008 Sum_probs=93.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcc--ccc--CChhHHHhhcc
Q 008718 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPI--NLPIVTDVFNS 220 (556)
Q Consensus 145 ~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ 220 (556)
..++++..|++++|++++++++++++++.+++|||.||.+++++.....+....+..+...+ +|. ........+..
T Consensus 9 ~~~ri~~~Ir~sldl~~Il~ttv~evr~lL~~DRV~IYqf~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~~~~~~~~ 88 (192)
T d3c2wa1 9 NAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQ 88 (192)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcEEEEEecCCCCCCcCCCccchhhHHHHHHHHHHh
Confidence 35668899999999999999999999999999999999999888776666555544333333 322 22333455556
Q ss_pred cCceEecCCCchhh---------hhh---cccCCC-------------CCcceeeeeccccccCccccCCCCCCcccceE
Q 008718 221 AQAMRLPYNCPLAR---------IRL---LVGRYV-------------PPDIVAVRVPLLHLSNFQINDWPELPAKSYAV 275 (556)
Q Consensus 221 ~~~~~~~~~~~~~~---------~~~---~~~~~~-------------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~ 275 (556)
++...+.+...... ... ....+. .+-++.+.+| +..++...
T Consensus 89 ~~~~~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~sp~~~~~L~~~~vkA~LivP--------------I~~~~~LW 154 (192)
T d3c2wa1 89 NPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSIS--------------IVVGGKLW 154 (192)
T ss_dssp CSEEEESCTTCCCEEEESSEETTTTEECCCTTCSSBCCCHHHHHHHHHHTCCEEEEEE--------------EEETTEEE
T ss_pred CCeEEEeccccCccceecCcCcccCCCccccchhhccCCHHHHHHHHhcCcceEEEEE--------------EeECCeeE
Confidence 66655555432110 000 000000 1234556666 44455667
Q ss_pred EEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008718 276 MVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 276 gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al~ 308 (556)
|++.++...+ .|...|.+++..++.+++.++.
T Consensus 155 GLL~~hqcs~-~~~~~e~~~~~el~~Qv~~~~~ 186 (192)
T d3c2wa1 155 GLFSCHHMSP-KLIPYPVRMSFQIFSQVCSAIV 186 (192)
T ss_dssp EEEEEEESSC-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 7777765544 4777777777777777777664
No 21
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=98.58 E-value=5.1e-07 Score=78.84 Aligned_cols=150 Identities=8% Similarity=0.004 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEeccCCCCeeEEEEeeccccccCcc--ccc--CChhHHHhhc
Q 008718 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPI--NLPIVTDVFN 219 (556)
Q Consensus 144 ~~l~~~~~~l~~~l~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~ 219 (556)
..++.++..|++++|++++++++++++++.+++|||.||.+++++.....+....+..+...+ .+. ........+.
T Consensus 8 ~L~~~ii~~Ir~Sldl~~Il~tav~eir~lL~~DRV~iy~f~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~~~~~~~ 87 (196)
T d2veaa1 8 HMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFI 87 (196)
T ss_dssp HHHHHHHHCC----CHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCCcceEEEeecCCCCCcccccchhHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999888776666665554333322 222 2233344455
Q ss_pred ccCceEecCCCchhh-hh--------h---cccCC-------------CCCcceeeeeccccccCccccCCCCCCcccce
Q 008718 220 SAQAMRLPYNCPLAR-IR--------L---LVGRY-------------VPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (556)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~--------~---~~~~~-------------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (556)
.++...+.+...... .. . .+..+ ..+-++.+.+| +..++..
T Consensus 88 ~~~~~~i~dv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~s~~~~~~L~~~~vka~L~vP--------------I~~~~~L 153 (196)
T d2veaa1 88 HNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTYLKNMGVGASLTIS--------------LIKDGHL 153 (196)
T ss_dssp HCSEEEESCSSSCCEEEESSEETTTTEECCCTTCSSBCCCHHHHHHHHHHTCSEEEEEE--------------EEETTEE
T ss_pred cCCcEEEcchhhcccccccccCcccCCCcccccceecCCCHHHHHHHHHcCCeEEEEEE--------------EEECCEE
Confidence 555555554332110 00 0 00000 01234555666 4445556
Q ss_pred EEEEEeccCCCCccccchHHHHHHHHHHHHHHH
Q 008718 275 VMVLMLPTDGGRKWRDHELELIDVVADQVAVAL 307 (556)
Q Consensus 275 ~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~al 307 (556)
.|++.++...+|.|+.+.+...+.++..++..+
T Consensus 154 wGlL~~H~c~pr~~~~~~r~~~e~l~~~~s~~~ 186 (196)
T d2veaa1 154 WGLIACHHQTPKVIPFELRKACEFFGRVVFSNI 186 (196)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 788887777799998887777777777666655
No 22
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.57 E-value=5.1e-07 Score=77.48 Aligned_cols=136 Identities=6% Similarity=0.024 Sum_probs=97.7
Q ss_pred HHccCChHHHHHHHHHHHHhhh-----CCceeEEEeccCCCCeeEEEEeeccccccCcccccCChhHHHhhcccCceEec
Q 008718 153 IRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLP 227 (556)
Q Consensus 153 l~~~l~~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
+....+....+..+...+.+.+ ..+.|.+|+.+.+.......... ........+|...+.++.++.++++++++
T Consensus 33 l~~~~~l~~~L~~i~~ll~~~~~~~~~~~d~~g~yl~~~~~~~~l~~~~~-~g~~~~~~i~~g~Gi~G~v~~~g~~i~v~ 111 (176)
T d1f5ma_ 33 SDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPF-QGKVACQMIQFGKGVCGTAASTKETQIVP 111 (176)
T ss_dssp HTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEE-EESCCCSEEETTSHHHHHHHHHTSCEEES
T ss_pred HhCcccHHHHHHHHHHHHHHHHHhhhcccCceEEEEEecCCCceEEEeec-CCCccceeecCCCcHHHHHHHhCCeEEec
Confidence 4445566666666666554443 34567778877655443332221 11223346888999999999999999999
Q ss_pred CCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHH
Q 008718 228 YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVA 306 (556)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~~~a 306 (556)
+...++++. ......++.+++|+ ...++..+||+.+.+..++.|+++|.++++.+|++++-+
T Consensus 112 D~~~dpr~~----~~~~~~~S~l~vPl-------------~~~~g~~~GVl~v~s~~~~~F~~~d~~~l~~~A~~ia~a 173 (176)
T d1f5ma_ 112 DVNKYPGHI----ACDGETKSEIVVPI-------------ISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKS 173 (176)
T ss_dssp CGGGSTTCC----CSSTTCCEEEEEEE-------------ECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCcchh----hccccccceEEecc-------------cccCCcEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 988877653 23355678899995 345567899999999999999999999999999999865
No 23
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=97.82 E-value=4.2e-06 Score=72.47 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCCCCCChhhhhccCcccCCCCCCCCCcceeeecccC
Q 008718 520 CGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 520 ~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.|++++..+++|++||+........+|+||||++||+
T Consensus 125 ~~~~~~~~~~~f~~~~~~~~~~~~~~G~GLGLai~k~ 161 (189)
T d1i58a_ 125 TLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKN 161 (189)
T ss_dssp TCCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHH
T ss_pred cchhhhhhhhhhccccccccccccCCcCccCHHHHHH
Confidence 3444666788999999765444445699999999984
No 24
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.78 E-value=1.4e-05 Score=69.75 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCC
Q 008718 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 460 l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
+.+++.+|+.||+++. +..+.+.+. ..+. -.|.|.|||.||+++.++.+|.++.+.+-
T Consensus 7 ~~~~v~ELi~NsiDA~-At~I~i~i~-~~g~--------------------~~i~V~DnG~Gi~~~dl~~~~~~~~tsk~ 64 (203)
T d1h7sa2 7 LSTAVKELVENSLDAG-ATNIDLKLK-DYGV--------------------DLIEVSDNGCGVEEENFEGLTLKHHTSKI 64 (203)
T ss_dssp HHHHHHHHHHHHHHTT-CSEEEEEEE-GGGT--------------------SEEEEEECSCCCCGGGSGGGGC-------
T ss_pred HHHHHHHHHHHHHcCC-CCEEEEEEE-cCCE--------------------EEEEEeeCCcccCHHHhhhhhhheeeccc
Confidence 6789999999999964 455555543 2221 35889999999999999999999887653
No 25
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=97.73 E-value=2.1e-05 Score=69.26 Aligned_cols=59 Identities=17% Similarity=0.362 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhhhhccCcccCC
Q 008718 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 460 l~~il~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
+..++.+|+.||+++.. ..+.|.+ ..++- -.|.|.|||.||++++++.++.++.+.|-
T Consensus 25 ~~~~vkELveNsiDA~A-t~I~V~i--~~~g~-------------------~~i~V~DnG~Gi~~~d~~~~~~r~~TSKi 82 (218)
T d1b63a2 25 PASVVKELVENSLDAGA-TRIDIDI--ERGGA-------------------KLIRIRDNGCGIKKDELALALARHATSKI 82 (218)
T ss_dssp HHHHHHHHHHHHHHTTC-SEEEEEE--EGGGT-------------------SEEEEEECSCCCCGGGHHHHHSTTCCSSC
T ss_pred HHHHHHHHHhhhhcCCC-CEEEEEE--EcCCc-------------------cEEEEeeCCCCcCHHHHHhhHhccccccc
Confidence 66899999999999654 4455444 22221 36999999999999999999999988764
Q ss_pred C
Q 008718 540 S 540 (556)
Q Consensus 540 ~ 540 (556)
.
T Consensus 83 ~ 83 (218)
T d1b63a2 83 A 83 (218)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=96.35 E-value=0.0014 Score=56.92 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 456 DEKRLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 456 d~~~l~~il~nLl~NAik~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+..-|.+++.++|.||++..-.+.. .+.+....++ .|+|.|||.|||-+.
T Consensus 23 ~~~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~~~dg---------------------~i~V~ddG~GIpv~~ 73 (212)
T d1kija2 23 GVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG---------------------SLTVEDNGRGIPVDL 73 (212)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---------------------CEEEEECSSCCCCSE
T ss_pred CCcchhhhhhhhhhhhhhhhhhcCCceEEEEEcCCC---------------------cEEEEECCccccccc
Confidence 4567889999999999997643221 1222222222 399999999999875
No 27
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.93 E-value=0.0055 Score=53.84 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCChhh------
Q 008718 458 KRLMQTILNIVGNAVKFTK--EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL------ 529 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~--~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~------ 529 (556)
.-|..++.++|.||+++.. .....+.+....++ =.|+|.|||.|||-+..+.
T Consensus 52 ~gl~ki~dEil~Na~D~~~r~~~~~~I~v~i~~~~--------------------~si~V~d~GrGIPv~~h~~~~~~~~ 111 (239)
T d1pvga2 52 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE--------------------HTIEVKNDGKGIPIEIHNKENIYIP 111 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--------------------TEEEEEEESSCCCCSBCTTTCSBHH
T ss_pred ccceeecceeeecccchhhhccccceEEEEEeCCC--------------------CEEEEEecCcceeeeeccccccchh
Confidence 3578888888888888641 11112222222222 1599999999999875443
Q ss_pred --hhccCcccCCCCC-----CCCCcceeeecc
Q 008718 530 --LFTKFAQSRGSSC-----QTPRAGLGLAIC 554 (556)
Q Consensus 530 --iF~~f~~~~~~~~-----~~~G~GlGL~i~ 554 (556)
+|....++..-.. ..+..|+|.+.|
T Consensus 112 e~ift~l~ag~nfd~~~~k~sgGlnGvG~~vv 143 (239)
T d1pvga2 112 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLC 143 (239)
T ss_dssp HHHHHSSSEESCCCTTSCCCCSCCSSCHHHHH
T ss_pred heeeEeeccccccccccceeeCCeeccceeeh
Confidence 6665544322211 123467776654
No 28
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=95.79 E-value=0.0052 Score=53.22 Aligned_cols=76 Identities=21% Similarity=0.366 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC--------hh
Q 008718 458 KRLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------IP 528 (556)
Q Consensus 458 ~~l~~il~nLl~NAik~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~--------~~ 528 (556)
.-|..++.++|.||++..-.|.. .+.+....++ .|+|.|||.|||-+. .+
T Consensus 33 ~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dg---------------------sIsV~ddGrGIPv~~h~~~~~~~~e 91 (219)
T d1ei1a2 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN---------------------SVSVQDDGRGIPTGIHPEEGVSAAE 91 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS---------------------CEEEEECSSCCCCSBCTTTSSBHHH
T ss_pred ccchhhhHhHhhhhhhhhcCCCccceeEEEcCCC---------------------eEEEEECCccccccccCccCCchhh
Confidence 46889999999999997633221 1222222222 389999999999775 45
Q ss_pred hhhccCcccCCC-----CCCCCCcceeeecc
Q 008718 529 LLFTKFAQSRGS-----SCQTPRAGLGLAIC 554 (556)
Q Consensus 529 ~iF~~f~~~~~~-----~~~~~G~GlGL~i~ 554 (556)
-+|....+...- ....+..|+|+..|
T Consensus 92 ~if~~l~tg~~fd~~~~~~sgG~nGvG~~~~ 122 (219)
T d1ei1a2 92 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 122 (219)
T ss_dssp HHHHSTTEESCSSSSSCSSCSCCSSCHHHHH
T ss_pred hhhhhhhhccCCCCCcceeEcCccccceeEE
Confidence 566554432211 11112357777654
No 29
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.66 E-value=0.0014 Score=56.60 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCCCCChhhhhc
Q 008718 512 RVQVNDSGCGVPPQDIPLLFT 532 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~ 532 (556)
.+.|.|||+||+.+.+.+-+.
T Consensus 73 ~l~i~DnGiGMt~~~~~~~l~ 93 (213)
T d2iwxa1 73 VLEIRDSGIGMTKAELINNLG 93 (213)
T ss_dssp EEEEEECSSCCCHHHHHHHHT
T ss_pred eeEEecCCccccHHHHHHHHh
Confidence 589999999999888765443
No 30
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=95.24 E-value=0.0037 Score=51.34 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeE-EEEEeeeCCCCCCCCCCCCCCCCCCCCceEEEEEEEEcCCCCCCCC
Q 008718 459 RLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 459 ~l~~il~nLl~NAik~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
-|..++.+++.||++-.-+|.. .|.+....++ .++|+|||.|||-+.
T Consensus 5 glhHlv~EivDNsiDEa~aG~~~~I~V~l~~D~---------------------si~V~D~GRGIPvd~ 52 (168)
T d1s14a_ 5 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ---------------------SLEVIDDGRGMPVDI 52 (168)
T ss_dssp STHHHHHHHHHHHHHHHHTTSCSEEEEEECTTS---------------------CEEEEECSSCCCCSB
T ss_pred CCceEEeeeeecHHHHHHcCCCCEEEEEEeCCC---------------------eEEEEEEecccceee
Confidence 4567788888888885433322 1222222222 389999999999763
No 31
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.88 E-value=0.0079 Score=51.56 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCCCCChhh
Q 008718 512 RVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~ 529 (556)
.++|+|||+||+.+.+.+
T Consensus 72 ~l~I~DnGiGMt~~el~~ 89 (208)
T d1uyla_ 72 TLTIVDTGIGMTKADLIN 89 (208)
T ss_dssp EEEEEECSCCCCHHHHHT
T ss_pred EEEEEcCCccccHHHHHh
Confidence 688999999999887644
No 32
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=94.62 E-value=0.01 Score=51.46 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 008718 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.+.|+|||+||+.+.+.+-+
T Consensus 71 ~l~i~DnGiGMt~~e~~~~l 90 (227)
T d2gqpa1 71 LLHVTDTGVGMTREELVKNL 90 (227)
T ss_dssp EEEEEECSCCCCHHHHHHHH
T ss_pred EEEEEecCccccHHHHHHHH
Confidence 68899999999988776544
Done!