Query 008719
Match_columns 556
No_of_seqs 147 out of 1656
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3.5E-30 1.2E-34 277.4 30.5 438 2-534 24-477 (491)
2 4gc0_A D-xylose-proton symport 100.0 1.1E-30 3.8E-35 281.1 20.8 418 26-549 54-483 (491)
3 2xut_A Proton/peptide symporte 100.0 1.8E-30 6.1E-35 282.1 21.4 467 2-537 23-511 (524)
4 1pw4_A Glycerol-3-phosphate tr 99.9 8.8E-26 3E-30 239.4 29.1 380 11-531 48-436 (451)
5 3o7q_A L-fucose-proton symport 99.9 2.8E-24 9.5E-29 227.2 31.2 334 11-488 45-409 (438)
6 2gfp_A EMRD, multidrug resista 99.9 5.7E-23 1.9E-27 213.1 16.5 154 7-196 16-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1.6E-22 5.6E-27 213.8 8.7 381 6-534 22-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 6.2E-12 2.1E-16 132.6 13.0 165 4-201 265-433 (451)
9 3o7q_A L-fucose-proton symport 99.2 1.5E-10 5.2E-15 121.5 15.6 153 5-195 272-426 (438)
10 2cfq_A Lactose permease; trans 99.1 9.6E-11 3.3E-15 123.3 10.8 160 9-203 238-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 9.4E-10 3.2E-14 117.6 10.4 172 6-204 298-474 (491)
12 4gc0_A D-xylose-proton symport 98.8 1.9E-07 6.5E-12 99.4 19.0 160 15-205 300-466 (491)
13 2gfp_A EMRD, multidrug resista 98.6 7.5E-09 2.6E-13 106.5 0.4 151 5-189 213-364 (375)
14 2xut_A Proton/peptide symporte 98.3 3.2E-06 1.1E-10 90.9 12.9 137 340-527 57-197 (524)
15 2knc_B Integrin beta-3; transm 23.7 13 0.00045 28.6 -0.6 8 545-552 57-64 (79)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.5e-30 Score=277.35 Aligned_cols=438 Identities=18% Similarity=0.230 Sum_probs=291.7
Q ss_pred cchhhhhhhHHhHHHHHHHh-----hCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 2 AERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 76 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~ 76 (556)
++++++|++.++++.|+++. +|.+..+.+++.+.+.++..++++++|+++||++|||+++.++.++..++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 24 WERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988 9999999999999999999999999999999945999999999999999998888
Q ss_pred HhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH
Q 008719 77 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (556)
++ .+.+.++++|+++|++.|...|+..++++|.+|+++.+ |+++++++
T Consensus 104 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~ 151 (491)
T 4aps_A 104 LP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIF 151 (491)
T ss_dssp SC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHH
T ss_pred Hh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHH
Confidence 75 46788999999999999999999999999999987632 77788889
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-CchhHHHHHHHH------HH
Q 008719 157 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLTRVAQVLVA------AF 226 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~------~~ 226 (556)
+...++|..+||.+++++.+..||+++|++.++..+++.+..+...++...+ ++++ .+..+..+.... ..
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 231 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF 231 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887776666655443332211 1111 111111110000 00
Q ss_pred hhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHH
Q 008719 227 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC 306 (556)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (556)
.-.... +....+ . ..++ ................ ....|+... ....++++......+...
T Consensus 232 ~~~~~~--------~~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 232 IAIIVV--------MNLVGW-N-------SLPA--YINLLTIVAIAIPVFY-FAWMISSVK-VTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp HHHHHH--------HHHHSS-C-------CTTH--HHHHHHHHHHHHHHHH-HHHHC-------------CTTHHHHHHH
T ss_pred HHHHHH--------HHhccC-c-------cccc--chhhhhHHHHHHHHHH-HHHHhhccc-ccHHHHHHHHHHHHHHHH
Confidence 000000 000000 0 0000 0000000000000000 000000000 011223333344445555
Q ss_pred HHHHHHHHhhcchhHHHHhhh-cccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHH
Q 008719 307 TIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL 385 (556)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~ 385 (556)
...++..+.+..+.+..+... .+.+ ....+.+...+.+..++..++.+++.||+.||. ......+..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~ 361 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHH
Confidence 666677777666654443332 1222 245666777888888888999999988887773 34455677888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHH
Q 008719 386 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA 465 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 465 (556)
++.+++++++........ + ..+ .+.+++++.+++.+++++...+..++++.+..|++.||+++|+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~---~----------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG---T----------SGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC---C----------CTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred HHHHHHHHHHHHHHHhcC---C----------CCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888877766542210 0 001 36677788899999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 466 ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 466 ~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
++...+|..+++.+.+.+.+. ++...|+..++++++..+..+.+.++.++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-------------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876541 12356788888888877777666655443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=1.1e-30 Score=281.07 Aligned_cols=418 Identities=13% Similarity=0.058 Sum_probs=252.0
Q ss_pred hhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCcc
Q 008719 26 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 105 (556)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (556)
..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++......... ...-...-
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----------~~~~~~~~ 122 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------hhHHHHHH
Confidence 3567899999999999999999999999 899999999999999999999864210000000 00000001
Q ss_pred chhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--------c
Q 008719 106 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------E 177 (556)
Q Consensus 106 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~--------~ 177 (556)
..+.+.++++|+++|+|.|+..++...+++|..|+++ |++..++......+|.++++.++..+.. .
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 2578999999999999999999999999999999988 9999999999999999999988776653 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCcc
Q 008719 178 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 257 (556)
Q Consensus 178 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 257 (556)
.+||+.+.+..+..++..+..+. .||+|+| +..+++.+++.+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI 243 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence 45777777766654444333221 6888888 77776666554433322
Q ss_pred ccCCchhH--hHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcch--hHHHHhhhcccccc
Q 008719 258 AHTDDFRC--LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLT--LSVQQAYTMNTHMG 333 (556)
Q Consensus 258 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 333 (556)
...++.+. .+.......+ ................... ....+.+... ....+........+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHG-------------RKTGGRLLMFGVGVIVIGV--MLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHTTHHHHSCCTHHHHHH--HHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred cCCchhHHHHHHHHHHHHhh-------------hhhhhHHHHhcccHHHHHH--HHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 21110000 0000000000 0000000000000000100 0111111111 00000000000000
Q ss_pred cccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Q 008719 334 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 413 (556)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (556)
..............+..++...+...+.||++||. ....+...++++++.++.....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~------------ 365 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT------------ 365 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc------------
Confidence 00111112233344555666666677778877773 3556666677776666554321
Q ss_pred cccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCC
Q 008719 414 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG 493 (556)
Q Consensus 414 ~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~ 493 (556)
. . .....++..+++.........|..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+...
T Consensus 366 ----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~----- 434 (491)
T 4gc0_A 366 ----Q-A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW----- 434 (491)
T ss_dssp ----T-C-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-----
T ss_pred ----c-c-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0 1 1222222222222222333456778999999999999999999999999999999999887654211
Q ss_pred CCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCchhhhhc
Q 008719 494 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN 549 (556)
Q Consensus 494 ~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (556)
... ..+....|++.++++++..++.+++.||+|++++||.++.+|++++
T Consensus 435 ----~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 435 ----LVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp ----HHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred ----HHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 000 0011256888999999999999999999999999999888876543
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.8e-30 Score=282.12 Aligned_cols=467 Identities=21% Similarity=0.336 Sum_probs=279.3
Q ss_pred cchhhhhhhHHhHHHHHHHhhC------CChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-chhHHHHHHHHHHHHHHHH
Q 008719 2 AERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYLAGLTG 74 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~~~~~~~~~~i~~~l 74 (556)
++++++|++.+.++.|+++++| ++..+++++.+.+.++..++.+++|+++|| + |||+++.++.++..++.++
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 999999999999999999999999999999 8 9999999999999999988
Q ss_pred HHHhhhccccCCCCCCccccccccCCCCCccch-hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhh--
Q 008719 75 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR-- 151 (556)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-- 151 (556)
++++ . +.+.++++|+++|++.+...|+..++++|.+|+++ |++
T Consensus 102 ~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 147 (524)
T 2xut_A 102 LAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQ 147 (524)
T ss_dssp HHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHH
T ss_pred HHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHH
Confidence 8886 4 67889999999999999999999999999999887 754
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcc
Q 008719 152 -FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH 230 (556)
Q Consensus 152 -~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.+++.+...++|.++||.+++++.+..||+++|++.++..+++.+..+...++.+.+++++++..+..+.+....+++.
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 4555899999999999999999998899999999988877666665554444333222222211111111111111110
Q ss_pred ccccccccccccccCCCCccccCCCccccCCchhHhHHHHh---hhccCCCCCCCCc-------ccchhhHHHHHhhhhh
Q 008719 231 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPWK-------LCTVTQVEEVKTLVRL 300 (556)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 300 (556)
... +.... +.+......... ...+.+.......... ...+. ....+|+ ........++++....
T Consensus 228 ~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (524)
T 2xut_A 228 EGK-GNIGL-VLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVLRI 301 (524)
T ss_dssp TTH-HHHHH-HHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHHHH
T ss_pred ccc-Cccch-hhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHHHH
Confidence 000 00000 000000000000 0000000000000000 00000 0000010 0000111223333333
Q ss_pred hhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHH
Q 008719 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 380 (556)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~ 380 (556)
..+......++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..++.+|..++ ....++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 375 (524)
T 2xut_A 302 LVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRK 375 (524)
T ss_dssp HHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHH
Confidence 33344444455555666565555544433321 0 23445566677777788888877654444443222 344566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHH
Q 008719 381 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 460 (556)
Q Consensus 381 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 460 (556)
+.+|.++.+++++++......+ .+ ..+ .+.+++++.+++.+++++...+..++++.+.+|++.||+
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~-----~~--------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMM-----DG--------GSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTT-----TT--------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cC--------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 7778888877776655432100 00 001 356677888999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccC-CCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008719 461 GSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 537 (556)
Q Consensus 461 ~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~ 537 (556)
++|+.++..++|+.+++.+.+.+.+..+ .+|.+. +++. ....|++.+++.+++.+.++++.+++++++.
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999998765221 123211 0111 1233778888888887777666666555443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=8.8e-26 Score=239.40 Aligned_cols=380 Identities=12% Similarity=0.008 Sum_probs=245.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH----hhhccccCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL----CATMKVFMP 86 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~----~~~~~~~~~ 86 (556)
.+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++.+++++ +
T Consensus 48 ~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------- 116 (451)
T 1pw4_A 48 ALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 116 (451)
T ss_dssp HHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhcc--------
Confidence 33444 445567 999999999999999999999999999999 89999999999999999999988 5
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.++++|+++|++.+...++..++++|.+|+++ |++++++.+...++|.++
T Consensus 117 --------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~ 170 (451)
T 1pw4_A 117 --------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGI 170 (451)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTS
T ss_pred --------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccC
Q 008719 167 AFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 245 (556)
Q Consensus 167 g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (556)
||.+++++.+.+| ||++|++.++..++..++.++..++.+.+...++. . .+ ++.
T Consensus 171 g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~---~~~ 225 (451)
T 1pw4_A 171 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------------------E-EY---KND 225 (451)
T ss_dssp HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC---------------------T-TT---CCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh---------------------h-hh---ccc
Confidence 9999999888888 99999999887666655554444432211100000 0 00 000
Q ss_pred CCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHh
Q 008719 246 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA 325 (556)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (556)
+.+ +..... .+ ...++..........+.+.. ......+....+......+..+.
T Consensus 226 ~~~-------~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 226 YPD-------DYNEKA------------EQ----ELTAKQIFMQYVLPNKLLWY---IAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp ------------------------------------CCTHHHHHHTSSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHB
T ss_pred ccc-------cchhhh------------hc----ccccccchHHHHHcCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 00 00000000000000111111 11111112222112222222211
Q ss_pred hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhh--cccccCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008719 326 YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPL--CRRITGHPRGASQLQRVGIGLAVSI-LSVIWAGIFERYR 402 (556)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~r~~~~~~~~~~~~~i~~g~~~~~-~~~~~~~~~~~~~ 402 (556)
. ...+.-....+.+.....+..++..++..++.||+ .+| +.+..+..+.. ++++++...
T Consensus 280 ~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 280 K---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp T---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHHTTSC----
T ss_pred H---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHHHh----
Confidence 1 11110011123344455556666777777777766 443 23444444433 444333221
Q ss_pred hhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHH
Q 008719 403 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNS 481 (556)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~lg~~l~~ 481 (556)
++.+.+.+....++.|++.....+..+++..+..|++.||+++|+.+....+ |..+++.+.+
T Consensus 342 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 342 -----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1024556667778888888888898999999999999999999999999999 9999999999
Q ss_pred HhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 482 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
.+.+..+ +...|++.+++.+++.+..+...++
T Consensus 405 ~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 405 YTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8877433 2467788888888877766655443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=2.8e-24 Score=227.18 Aligned_cols=334 Identities=9% Similarity=0.011 Sum_probs=223.7
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH---HHhhhccccCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI---TLCATMKVFMPN 87 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~ 87 (556)
...+.+++++++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++.+++ +.+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~--------- 114 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEI--------- 114 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 3344456778999999999999999999999999999999999 899999999999999999988 443
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.+.++++|++.|++.|...+...++++|.+|+++ |++.+++.+...++|.++|
T Consensus 115 -------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 115 -------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999988 9999999999999999999
Q ss_pred HHHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHhc-ccccccCCCCCchhHHHH
Q 008719 168 FTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFIGT-PLYRHRLPGGSPLTRVAQ 220 (556)
Q Consensus 168 ~~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (556)
|.+++++. ...+ ||++|++.++..++..+..+..+ ++.+.+++++++
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------ 243 (438)
T 3o7q_A 170 VVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------ 243 (438)
T ss_dssp HHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------
T ss_pred HHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------
Confidence 99999988 5444 99999877766554444433321 111000000000
Q ss_pred HHHHHHhhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhh-
Q 008719 221 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR- 299 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 299 (556)
.. +..+... ...+.+.+..
T Consensus 244 ---------------------------------------~~--~~~~~~~-------------------~~~~~~~~~~~ 263 (438)
T 3o7q_A 244 ---------------------------------------QG--SFSASLS-------------------RLARIRHWRWA 263 (438)
T ss_dssp ---------------------------------------TT--SHHHHHH-------------------HHTTCSHHHHH
T ss_pred ---------------------------------------cc--chhhhHH-------------------HHHhChHHHHH
Confidence 00 0000000 0000011111
Q ss_pred hhhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHH
Q 008719 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ 379 (556)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~ 379 (556)
.+..+.....+.......+.++..+..+.+.. ..+.+.....+..++..++..++.||+.+| +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~ 326 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------K 326 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------H
Confidence 11111111112222222222212221122211 122334444555666677777777776555 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHH
Q 008719 380 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 459 (556)
Q Consensus 380 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 459 (556)
.+..+.++.+++++...... +. +.+...++.+++.+...|..+++..+..|++ ++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred HHHHHHHHHHHHHHHHHHcC-----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 46666666666655544321 22 2344557788888889999999999999977 99
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 460 IGSAYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 460 ~~~gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
.++++.. .+.+|+.+++.+.+.+.+..|
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999887 677999999999998877543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=5.7e-23 Score=213.13 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=137.6
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
...+.+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++..+..++.++++.+
T Consensus 16 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 16 QTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 3334444444 467899999999999999999999999999999999 899999999999999999988886
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..+
T Consensus 86 --------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 86 --------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLL 139 (375)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999888 999999999999999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQMEHGWGSAFGALAIAMGISNM 196 (556)
Q Consensus 167 g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~ 196 (556)
+|.+++++.+..+||++|++.++..++..+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999988999999988776554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.86 E-value=1.6e-22 Score=213.77 Aligned_cols=381 Identities=12% Similarity=0.018 Sum_probs=212.4
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
++..+.++++.|+++++|+|..+++++.+.+.++..++++++|+++|| +||||+++++..+..++...+......
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~---- 96 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFG---- 96 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHH----
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 444556789999998999999999999999999999999999999999 899999998888765532211110000
Q ss_pred CCCCCccccccccCCCCCccchhH-HHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
... ..+..++++.+++.|...+...+...+..++.. + +++..++......++|.
T Consensus 97 ---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~~~~~~g~~~~~~~~g~ 151 (417)
T 2cfq_A 97 ---------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-R---RSNFEFGRARMFGCVGW 151 (417)
T ss_dssp ---------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-H---HHTCCHHHHSSSTTTHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-h---hcccchHHHHHHHHHHH
Confidence 000 012344555555544444444444444433221 1 15666677777789999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
.++|.+++++.+ .+|+++|++.++..++..+..+...++ +++..+
T Consensus 152 ~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------ 196 (417)
T 2cfq_A 152 ALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------------------ 196 (417)
T ss_dssp HHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------------------
T ss_pred HHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------------------
Confidence 999999999876 589999987766533332222111111 000000
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhh-hHHHHHHHHHHhhcchhHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 323 (556)
.++..+. ..++.+..+... ..++ +........ ......+.....+.+.++..
T Consensus 197 --~~~~~~~-----~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 197 --VANAVGA-----NHSAFSLKLALE-------------------LFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp --SSSSSSS-----CCCCCCHHHHHH-------------------HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccc-----ccccccHHHHHH-------------------HhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000000000 0001 111111111 11111111111122222211
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
..... ..+ ....+....++.+...+...+..++.||++|| +.+..+.++.+++++.....
T Consensus 250 -~~~~~-~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T 2cfq_A 250 -FFATG-EQG--TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA----- 309 (417)
T ss_dssp -TSSSH-HHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC-----
T ss_pred -HHhcc-CCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh-----
Confidence 11000 000 00012223334444555666777777777665 33556666666554443221
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH-HHHHHhHHHHHHHHHHHH
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSI 482 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~lg~~l~~~ 482 (556)
+ +.+.+++..++.+++.....+..+.++.|..|++.||++.++ .+..+.+|+.+++.+.+.
T Consensus 310 ----------------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~ 371 (417)
T 2cfq_A 310 ----------------T--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371 (417)
T ss_dssp ----------------C--SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred ----------------c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Confidence 1 344455556666777777777778999999999999999998 488888999999999997
Q ss_pred hhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 483 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 483 i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
+.+..+ +...|++.+++.+++.+..+...+++++
T Consensus 372 l~~~~g------------------~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 372 MYESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSH------------------HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhcC------------------cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 765322 3456788888888777666555554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=6.2e-12 Score=132.59 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=139.5
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc--chhHHHHHHHHHHH-HHHHHHHHhhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIYL-AGLTGITLCAT 80 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~~~-i~~~l~~~~~~ 80 (556)
.++++++..+++.|+++.+|.+..+++++.+.+.++..++.++.|+++|| + |||+.+.++..+.. ++.+++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 341 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMN-- 341 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHh--
Confidence 35667788899999998899999999999999999999999999999999 8 99998888777665 554444432
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
+. .+.+.+.+..++.|++.+...+...++..|.+|+++ |++++++.+...
T Consensus 342 -----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 391 (451)
T 1pw4_A 342 -----PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFG 391 (451)
T ss_dssp -----CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHH
T ss_pred -----cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHH
Confidence 10 255677778888999999998989999999999887 999999999999
Q ss_pred HH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 161 TV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 161 ~l-G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
++ |..++|.+.|++.+..||+.+|++.++..+++.++.+..
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999888777666655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.20 E-value=1.5e-10 Score=121.50 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=124.9
Q ss_pred hhhhhhHHhHHHH-HHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.+++++..+++.| +++.+|.+..+++++.+.+.++..++.+++|+++|| +|||+.+.++.++..++.+++...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~----- 345 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA----- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHc-----
Confidence 4556777889999 888889999999999999999999999999999999 899999999998888887776664
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+... .+..++.|++.+...|...++..|.+|++ ++++.++.. ...+|
T Consensus 346 -----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 346 -----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIG 393 (438)
T ss_dssp -----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHH
T ss_pred -----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHH
Confidence 23233 33447889999999999999999988844 455555554 56799
Q ss_pred HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 195 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~ 195 (556)
..++|.+.|++.+..| ++..|++.++..++..
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999999988 9999998765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.15 E-value=9.6e-11 Score=123.25 Aligned_cols=160 Identities=10% Similarity=0.058 Sum_probs=121.8
Q ss_pred hhHHhHHHHHHHhhCC---ChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 9 GLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
....+++.|+++.++. +..+.++..+...++..++.+++|+++|| +|||+++..+..+.+++.+++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~------- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA------- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3445567788765553 23455677777777888899999999999 899999998888877776555543
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHH-HHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~ 164 (556)
.+.+.+++..++.+++.+...+....+..|.+|++. |+++.++ ++....+|.
T Consensus 310 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 310 ---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAM 362 (417)
T ss_dssp ---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHH
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHH
Confidence 234566667777788777777777889999999887 9999888 467778999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+++|.++|++.+..|+...|.+.++..+++.+..+...+
T Consensus 363 ~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998888999998888776666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.99 E-value=9.4e-10 Score=117.56 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=129.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHH-----HHHHHHHHHHHHHHHhhh
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~~~i~~~l~~~~~~ 80 (556)
.++.....++.|+++.++.+..+.+++.+...++..++.++.|++.|| +|||+... ++..+..++..++.....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678889988888887888999999999999999999999999 89986654 666666666655554321
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
... ++...+.+.+.+..++.|++.+...+...++..|.+|++. |+++.++.+...
T Consensus 377 ~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 431 (491)
T 4aps_A 377 LYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSS 431 (491)
T ss_dssp HCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHH
T ss_pred hcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 000 0001355677788889999999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
++|..+++.+.+++.+ .++...|.+.+...+++.+..+...++
T Consensus 432 ~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 432 SVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888876 467777877777666666555555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.78 E-value=1.9e-07 Score=99.45 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=116.5
Q ss_pred HHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 15 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 15 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+.++...... .
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~---~-------- 367 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ---A-------- 367 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTT---C--------
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcc---c--------
Confidence 345556788888888888888889999999999999999 8999999999988888877766542210 0
Q ss_pred ccccCCCCCccchhHH-HHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 95 SQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
.... ......+..+++ ....|....+.+|.+|++. |+++.++.+...++|..+++.+.+.
T Consensus 368 ------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 368 ------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp ------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 222222223333 3345777889999999998 9999999999999999999888766
Q ss_pred hhc------ccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 008719 174 IQM------EHGWGSAFGALAIAMGISNMLFFIGTPLY 205 (556)
Q Consensus 174 l~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 205 (556)
+.+ ..++..+|++.++..+++.+..++..|+.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 543 24566778887777777777666666654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.57 E-value=7.5e-09 Score=106.45 Aligned_cols=151 Identities=13% Similarity=-0.078 Sum_probs=115.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHH-HHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~i~~~l~~~~~~~~~ 83 (556)
.+++++..+++.|+++.+|.+..+++++.+...++..++.++.|+++|| +||+. ..+... ...+..+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~--- 286 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPDWF--- 286 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHHH--HHHHHHHHHTSSSSSHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhh---
Confidence 4556667777788888899999999999999999999999999999999 78732 223322 2222221111100
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
+ ..+.+.+++..++.|++.+...+...++..|..| ++ |+++.++.+...++|
T Consensus 287 --~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 287 --G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIG 338 (375)
T ss_dssp --H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHH
T ss_pred --c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHH
Confidence 0 0355667788888999999999999999999987 55 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAI 189 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~ 189 (556)
..++|.+.+.+.+..+|+..+.+.+.
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999887778877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.31 E-value=3.2e-06 Score=90.86 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=99.2
Q ss_pred CcccccchhHHHHHHHhhhhhhhhh-cccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
+++.....+...+..++.+++.||+ +|| +.+.++.++.+++.++.....
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 3344455666677777778888877 655 346677777777766654431
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH---HHHHHhHHHHHHHHHHHHhhhccCCCCCCCC
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQP 495 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~ 495 (556)
.+.+.+++..++.|++.+...|...+++.+.+|++.|+...+. .+....+|..+++.+.+.+.+..
T Consensus 107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1566777888999999999999999999999999999877666 88888899999998888765522
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 008719 496 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLY 527 (556)
Q Consensus 496 ~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~ 527 (556)
+| .+.|++.+++.++..+..+.
T Consensus 176 g~----------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GA----------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CH----------HHHHHHHHHHHHHHHHHHHS
T ss_pred cH----------HHHHHHHHHHHHHHHHHHHH
Confidence 24 46677777776666554433
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.74 E-value=13 Score=28.62 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=3.2
Q ss_pred hhhhcccc
Q 008719 545 EVMENKLY 552 (556)
Q Consensus 545 ~~~~~~~~ 552 (556)
+..+++.|
T Consensus 57 ~~~~NPly 64 (79)
T 2knc_B 57 DTANNPLY 64 (79)
T ss_dssp TTTTCCHH
T ss_pred ccCCCCCc
Confidence 33344443
Done!