Query 008720
Match_columns 556
No_of_seqs 352 out of 3634
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 15:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 7.8E-42 1.7E-46 346.3 41.6 360 122-555 488-851 (890)
2 PRK10490 sensor protein KdpD; 100.0 2E-33 4.3E-38 310.1 43.4 360 124-556 493-855 (895)
3 COG3275 LytS Putative regulato 100.0 2.9E-30 6.2E-35 246.4 33.7 404 25-556 105-521 (557)
4 PRK13837 two-component VirA-li 100.0 8.6E-30 1.9E-34 282.5 42.2 384 126-556 259-648 (828)
5 TIGR02916 PEP_his_kin putative 100.0 3E-29 6.5E-34 272.5 44.0 340 146-556 307-653 (679)
6 PRK11091 aerobic respiration c 100.0 1.7E-30 3.6E-35 288.2 33.4 200 338-556 277-478 (779)
7 PRK10618 phosphotransfer inter 100.0 4E-30 8.6E-35 280.9 25.8 214 326-556 432-645 (894)
8 PRK09303 adaptive-response sen 100.0 1.8E-29 3.8E-34 255.3 25.8 208 328-556 135-350 (380)
9 COG5002 VicK Signal transducti 100.0 1.6E-30 3.5E-35 238.3 12.5 199 339-556 220-421 (459)
10 PRK10841 hybrid sensory kinase 100.0 5.5E-29 1.2E-33 276.2 24.3 212 325-556 428-640 (924)
11 COG4251 Bacteriophytochrome (l 100.0 9.6E-27 2.1E-31 229.3 33.5 205 327-556 507-714 (750)
12 PRK11107 hybrid sensory histid 100.0 6.8E-26 1.5E-30 257.0 44.0 212 330-556 279-491 (919)
13 TIGR02956 TMAO_torS TMAO reduc 100.0 7.5E-28 1.6E-32 274.2 26.5 205 332-556 452-656 (968)
14 PRK15347 two component system 100.0 1.6E-27 3.4E-32 270.3 25.8 211 323-556 377-587 (921)
15 COG4191 Signal transduction hi 100.0 9.4E-27 2E-31 230.0 24.3 186 343-556 383-574 (603)
16 PRK11466 hybrid sensory histid 100.0 1.1E-26 2.4E-31 262.8 26.8 213 321-556 421-635 (914)
17 PRK11006 phoR phosphate regulo 99.9 2.3E-25 5E-30 230.1 31.9 191 344-556 204-396 (430)
18 COG3852 NtrB Signal transducti 99.9 1.3E-26 2.8E-31 209.8 16.8 194 343-556 131-328 (363)
19 PRK10364 sensor protein ZraS; 99.9 1E-22 2.3E-27 212.1 38.0 185 342-556 235-421 (457)
20 PRK09959 hybrid sensory histid 99.9 7.7E-25 1.7E-29 254.2 24.2 212 329-556 697-909 (1197)
21 PRK10604 sensor protein RstB; 99.9 1.5E-24 3.2E-29 223.8 22.3 204 324-556 192-396 (433)
22 TIGR02938 nifL_nitrog nitrogen 99.9 4E-24 8.7E-29 225.6 23.1 191 342-556 274-467 (494)
23 PRK10815 sensor protein PhoQ; 99.9 4.2E-24 9.1E-29 222.3 22.4 206 324-556 246-451 (485)
24 TIGR03785 marine_sort_HK prote 99.9 7.6E-24 1.7E-28 229.0 23.7 213 322-556 463-676 (703)
25 COG5000 NtrY Signal transducti 99.9 2.2E-22 4.8E-27 198.3 28.3 182 345-556 487-680 (712)
26 PRK10755 sensor protein BasS/P 99.9 1.8E-23 3.8E-28 210.8 21.2 186 343-556 136-322 (356)
27 PRK10549 signal transduction h 99.9 5.4E-23 1.2E-27 215.3 22.8 214 321-556 217-431 (466)
28 TIGR01386 cztS_silS_copS heavy 99.9 1.1E-22 2.4E-27 212.5 23.3 212 321-556 218-432 (457)
29 PRK10337 sensor protein QseC; 99.9 1.5E-22 3.4E-27 210.7 23.7 209 322-556 215-424 (449)
30 PRK09835 sensor kinase CusS; P 99.9 3.9E-22 8.4E-27 209.9 24.2 212 322-556 240-454 (482)
31 TIGR02966 phoR_proteo phosphat 99.9 3E-22 6.4E-27 200.0 20.9 192 344-556 114-308 (333)
32 PRK11100 sensory histidine kin 99.9 6.8E-22 1.5E-26 207.6 22.9 207 326-556 239-446 (475)
33 PRK11073 glnL nitrogen regulat 99.9 6.8E-22 1.5E-26 198.8 21.1 191 343-556 129-321 (348)
34 PRK09470 cpxA two-component se 99.9 1.7E-21 3.7E-26 203.7 23.2 210 321-556 220-430 (461)
35 PRK09467 envZ osmolarity senso 99.9 1.4E-21 2.9E-26 202.8 21.4 201 321-556 206-406 (435)
36 COG4192 Signal transduction hi 99.9 2.1E-20 4.5E-25 177.7 23.5 184 343-555 450-638 (673)
37 PRK10600 nitrate/nitrite senso 99.9 8.7E-18 1.9E-22 179.7 41.2 329 123-556 199-529 (569)
38 PRK11360 sensory histidine kin 99.8 5.5E-20 1.2E-24 199.2 22.4 185 343-556 389-574 (607)
39 COG0642 BaeS Signal transducti 99.8 3.5E-19 7.6E-24 177.3 22.7 188 343-556 114-302 (336)
40 PRK11644 sensory histidine kin 99.8 1.8E-18 3.8E-23 180.2 27.1 224 287-556 244-469 (495)
41 PRK13557 histidine kinase; Pro 99.8 7.8E-19 1.7E-23 187.6 21.2 199 343-556 162-367 (540)
42 COG3850 NarQ Signal transducti 99.8 6E-16 1.3E-20 151.5 38.5 351 66-525 158-527 (574)
43 PRK13560 hypothetical protein; 99.8 5E-18 1.1E-22 190.4 20.1 183 331-556 592-778 (807)
44 COG3290 CitA Signal transducti 99.8 3.4E-15 7.3E-20 147.8 34.7 166 347-556 336-504 (537)
45 KOG0519 Sensory transduction h 99.7 3.8E-19 8.2E-24 192.5 0.7 554 2-555 30-606 (786)
46 PRK11086 sensory histidine kin 99.7 1E-15 2.2E-20 163.6 25.8 163 346-556 341-508 (542)
47 PRK15053 dpiB sensor histidine 99.7 8.6E-16 1.9E-20 164.1 18.7 168 347-556 341-512 (545)
48 PRK10935 nitrate/nitrite senso 99.6 6.3E-12 1.4E-16 135.1 41.4 160 351-556 367-532 (565)
49 COG3851 UhpB Signal transducti 99.6 3.7E-12 8E-17 118.6 25.6 208 290-525 248-456 (497)
50 PRK13559 hypothetical protein; 99.5 6.2E-14 1.3E-18 141.7 14.3 158 344-556 170-332 (361)
51 PF02518 HATPase_c: Histidine 99.4 3.6E-14 7.8E-19 117.0 2.9 82 455-556 1-83 (111)
52 COG4564 Signal transduction hi 99.4 1.1E-08 2.4E-13 94.6 32.7 156 341-526 248-406 (459)
53 COG4585 Signal transduction hi 99.3 3E-10 6.4E-15 114.6 23.6 157 342-527 169-327 (365)
54 PRK15429 formate hydrogenlyase 99.3 2.7E-10 5.8E-15 123.9 24.2 185 130-328 171-362 (686)
55 PRK10547 chemotaxis protein Ch 99.3 5.2E-11 1.1E-15 125.8 13.6 117 417-556 343-496 (670)
56 PRK11061 fused phosphoenolpyru 99.2 2.3E-09 5.1E-14 115.9 22.9 159 144-316 3-163 (748)
57 COG2972 Predicted signal trans 99.2 1.7E-09 3.7E-14 111.9 20.5 160 338-556 258-423 (456)
58 COG3920 Signal transduction hi 99.2 4.4E-09 9.5E-14 96.7 19.8 152 344-525 19-174 (221)
59 PF00512 HisKA: His Kinase A ( 99.2 3.2E-10 7E-15 83.9 9.8 65 344-408 2-68 (68)
60 TIGR01817 nifA Nif-specific re 99.1 8.8E-09 1.9E-13 108.9 19.6 162 142-317 3-166 (534)
61 PRK14868 DNA topoisomerase VI 99.0 4.8E-10 1E-14 116.6 7.4 84 436-537 22-108 (795)
62 PF13492 GAF_3: GAF domain; PD 99.0 9.9E-09 2.1E-13 86.7 12.8 129 158-309 1-129 (129)
63 PRK04184 DNA topoisomerase VI 98.9 8E-10 1.7E-14 112.8 5.7 83 456-555 33-122 (535)
64 TIGR01925 spIIAB anti-sigma F 98.9 3.6E-09 7.7E-14 90.6 7.0 76 456-556 36-115 (137)
65 TIGR01052 top6b DNA topoisomer 98.8 3.9E-09 8.4E-14 106.6 6.5 83 454-555 23-112 (488)
66 COG0643 CheA Chemotaxis protei 98.8 6E-08 1.3E-12 103.4 15.7 118 416-556 389-546 (716)
67 PF01590 GAF: GAF domain; Int 98.8 2.6E-08 5.7E-13 87.0 9.7 136 158-307 1-154 (154)
68 PRK15429 formate hydrogenlyase 98.8 2.3E-07 5.1E-12 101.1 18.6 172 143-329 8-183 (686)
69 smart00387 HATPase_c Histidine 98.7 2.2E-08 4.8E-13 81.8 6.1 81 455-555 1-82 (111)
70 KOG0519 Sensory transduction h 98.7 5.5E-09 1.2E-13 114.0 2.5 208 347-556 224-461 (786)
71 PRK04069 serine-protein kinase 98.7 3E-08 6.4E-13 87.1 6.3 80 456-556 39-122 (161)
72 PRK05022 anaerobic nitric oxid 98.7 1E-06 2.2E-11 92.4 18.8 169 144-327 4-176 (509)
73 PRK03660 anti-sigma F factor; 98.7 4.3E-08 9.3E-13 84.9 6.4 76 456-556 36-115 (146)
74 COG3605 PtsP Signal transducti 98.6 5E-06 1.1E-10 83.2 19.2 154 146-313 5-160 (756)
75 PRK14867 DNA topoisomerase VI 98.6 5.5E-08 1.2E-12 101.4 5.9 81 456-555 33-120 (659)
76 smart00065 GAF Domain present 98.6 1.7E-06 3.8E-11 73.8 13.5 143 158-314 1-146 (149)
77 PF13185 GAF_2: GAF domain; PD 98.5 7.5E-07 1.6E-11 77.1 9.8 134 158-308 3-148 (148)
78 TIGR01924 rsbW_low_gc serine-p 98.4 4E-07 8.6E-12 79.6 6.7 80 456-556 39-122 (159)
79 cd00075 HATPase_c Histidine ki 98.4 2.1E-07 4.6E-12 74.6 4.6 76 460-556 1-78 (103)
80 smart00388 HisKA His Kinase A 98.4 2.3E-06 4.9E-11 62.4 8.8 63 344-406 2-64 (66)
81 TIGR00585 mutl DNA mismatch re 98.2 3.5E-06 7.5E-11 82.6 6.4 61 458-540 21-81 (312)
82 KOG0787 Dehydrogenase kinase [ 98.1 0.0002 4.3E-09 68.4 17.3 158 377-555 172-352 (414)
83 COG3604 FhlA Transcriptional r 98.1 0.00014 3E-09 72.4 15.5 175 143-331 33-212 (550)
84 cd00082 HisKA Histidine Kinase 98.0 3.8E-05 8.3E-10 55.4 8.5 61 344-404 4-65 (65)
85 PF13581 HATPase_c_2: Histidin 97.9 1.9E-05 4.1E-10 66.2 6.1 74 456-555 28-105 (125)
86 COG1389 DNA topoisomerase VI, 97.9 1.1E-05 2.5E-10 78.5 4.4 62 456-536 33-98 (538)
87 PRK13558 bacterio-opsin activa 97.8 0.00092 2E-08 73.5 18.5 146 145-310 289-438 (665)
88 COG2203 FhlA FOG: GAF domain [ 97.8 2.9E-05 6.2E-10 68.5 4.8 159 143-315 3-170 (175)
89 TIGR02851 spore_V_T stage V sp 97.6 0.001 2.2E-08 58.9 11.9 126 156-307 51-179 (180)
90 COG2172 RsbW Anti-sigma regula 97.6 0.00017 3.6E-09 61.6 6.8 76 456-556 37-117 (146)
91 PRK00095 mutL DNA mismatch rep 97.3 0.00031 6.7E-09 75.3 6.1 61 458-540 21-81 (617)
92 PF13589 HATPase_c_3: Histidin 97.2 4.2E-05 9.2E-10 65.1 -1.6 59 461-539 4-62 (137)
93 PF14501 HATPase_c_5: GHKL dom 97.0 0.0021 4.5E-08 51.3 6.2 72 456-556 2-75 (100)
94 COG0323 MutL DNA mismatch repa 96.6 0.0015 3.2E-08 69.9 3.7 60 459-540 23-82 (638)
95 COG1956 GAF domain-containing 96.5 0.13 2.9E-06 43.5 13.4 126 159-306 33-159 (163)
96 PRK05559 DNA topoisomerase IV 96.5 0.0022 4.8E-08 68.7 3.6 78 456-554 34-125 (631)
97 PF11849 DUF3369: Domain of un 96.3 0.24 5.1E-06 44.0 15.2 146 136-317 14-172 (174)
98 PF07568 HisKA_2: Histidine ki 96.2 0.07 1.5E-06 39.9 9.5 73 351-432 2-74 (76)
99 PRK05644 gyrB DNA gyrase subun 95.9 0.01 2.3E-07 63.6 5.5 52 456-528 34-86 (638)
100 PRK14083 HSP90 family protein; 95.4 0.013 2.8E-07 62.1 3.8 49 462-531 26-83 (601)
101 TIGR01059 gyrB DNA gyrase, B s 95.2 0.021 4.5E-07 61.8 4.6 51 456-527 27-78 (654)
102 PRK05218 heat shock protein 90 95.0 0.02 4.2E-07 61.4 3.5 22 512-533 74-95 (613)
103 PF04340 DUF484: Protein of un 94.9 0.32 6.9E-06 45.2 11.2 155 129-309 63-222 (225)
104 TIGR01055 parE_Gneg DNA topois 94.9 0.013 2.9E-07 62.6 2.2 50 459-531 30-90 (625)
105 PTZ00272 heat shock protein 83 94.5 0.054 1.2E-06 58.3 5.4 20 511-530 72-91 (701)
106 smart00433 TOP2c Topoisomerase 94.2 0.015 3.3E-07 62.0 0.5 48 460-528 2-50 (594)
107 TIGR01058 parE_Gpos DNA topois 94.0 0.051 1.1E-06 58.2 4.1 51 456-527 31-82 (637)
108 COG0326 HtpG Molecular chapero 94.0 0.049 1.1E-06 56.8 3.8 19 511-529 74-92 (623)
109 PRK14939 gyrB DNA gyrase subun 93.8 0.067 1.4E-06 58.1 4.3 49 458-527 36-85 (756)
110 COG5381 Uncharacterized protei 93.4 0.14 3.1E-06 42.2 4.5 31 459-489 63-93 (184)
111 PHA02569 39 DNA topoisomerase 93.2 0.067 1.5E-06 56.9 3.3 16 512-527 80-95 (602)
112 PLN03128 DNA topoisomerase 2; 92.9 0.16 3.4E-06 57.8 5.6 50 458-527 51-102 (1135)
113 PF06580 His_kinase: Histidine 92.7 0.79 1.7E-05 34.8 7.6 76 341-443 5-80 (82)
114 PLN03237 DNA topoisomerase 2; 91.8 0.21 4.5E-06 57.6 4.9 49 459-527 77-127 (1465)
115 PTZ00108 DNA topoisomerase 2-l 91.7 0.26 5.6E-06 57.0 5.5 49 459-527 57-110 (1388)
116 COG0187 GyrB Type IIA topoisom 91.4 0.06 1.3E-06 55.9 0.1 51 458-529 35-86 (635)
117 PTZ00109 DNA gyrase subunit b; 91.2 0.057 1.2E-06 58.8 -0.2 52 456-528 126-178 (903)
118 PTZ00130 heat shock protein 90 90.8 0.18 3.8E-06 54.8 3.0 18 512-529 136-153 (814)
119 KOG1978 DNA mismatch repair pr 90.8 0.29 6.2E-06 51.3 4.3 57 460-538 21-77 (672)
120 PF14689 SPOB_a: Sensor_kinase 90.3 1.6 3.4E-05 31.1 6.5 44 347-394 15-58 (62)
121 KOG1979 DNA mismatch repair pr 90.1 0.39 8.4E-06 49.2 4.5 57 460-538 28-84 (694)
122 PF06018 CodY: CodY GAF-like d 89.4 7.1 0.00015 34.3 11.2 42 268-310 115-156 (177)
123 KOG1977 DNA mismatch repair pr 88.1 0.67 1.5E-05 48.6 4.6 58 458-538 20-77 (1142)
124 COG5385 Uncharacterized protei 87.3 18 0.00039 31.0 13.1 123 347-486 18-140 (214)
125 PRK10963 hypothetical protein; 85.6 30 0.00065 32.0 17.4 145 137-308 68-217 (223)
126 COG4465 CodY Pleiotropic trans 85.1 28 0.00061 31.3 16.0 42 268-310 120-161 (261)
127 PRK04158 transcriptional repre 82.4 43 0.00094 31.3 17.4 42 268-310 117-158 (256)
128 PF10066 DUF2304: Uncharacteri 77.1 32 0.0007 27.9 9.5 9 39-47 19-27 (115)
129 COG3159 Uncharacterized protei 77.0 39 0.00085 30.4 10.4 65 123-187 51-119 (218)
130 PF07536 HWE_HK: HWE histidine 76.6 12 0.00027 28.3 6.5 70 351-432 2-71 (83)
131 PF07730 HisKA_3: Histidine ki 76.3 25 0.00055 25.1 8.1 47 344-390 2-50 (68)
132 PF10090 DUF2328: Uncharacteri 76.1 57 0.0012 29.0 14.4 128 360-522 2-129 (182)
133 KOG0355 DNA topoisomerase type 73.4 6.9 0.00015 42.4 5.8 52 456-527 50-102 (842)
134 PF12805 FUSC-like: FUSC-like 70.5 1.1E+02 0.0023 29.6 13.9 54 81-134 68-121 (284)
135 PF11152 DUF2930: Protein of u 68.9 72 0.0016 28.6 10.3 74 210-303 120-194 (195)
136 PF07495 Y_Y_Y: Y_Y_Y domain; 67.9 6.5 0.00014 28.0 3.1 43 242-284 2-52 (66)
137 TIGR02787 codY_Gpos GTP-sensin 67.8 1.1E+02 0.0023 28.6 17.0 43 268-311 114-156 (251)
138 COG5393 Predicted membrane pro 67.6 63 0.0014 25.9 9.3 33 71-107 71-103 (131)
139 COG4251 Bacteriophytochrome (l 67.5 1.8E+02 0.0039 31.2 14.5 41 145-185 329-369 (750)
140 PF05884 ZYG-11_interact: Inte 62.5 39 0.00085 32.2 7.7 63 26-90 139-202 (299)
141 KOG3689 Cyclic nucleotide phos 60.1 76 0.0016 34.6 10.3 170 140-322 163-345 (707)
142 PF10011 DUF2254: Predicted me 58.9 1.9E+02 0.0041 29.2 12.7 28 407-434 327-354 (371)
143 PF10966 DUF2768: Protein of u 57.6 21 0.00045 24.8 3.7 41 26-66 5-46 (58)
144 PF14248 DUF4345: Domain of un 55.3 1.2E+02 0.0025 25.0 9.1 62 28-92 50-111 (124)
145 PF07694 5TM-5TMR_LYT: 5TMR of 55.2 1.4E+02 0.003 25.9 10.0 46 29-76 86-133 (169)
146 COG1620 LldP L-lactate permeas 54.9 67 0.0014 33.4 8.5 75 26-111 184-259 (522)
147 COG0813 DeoD Purine-nucleoside 54.9 16 0.00034 33.2 3.6 53 452-525 18-70 (236)
148 COG4587 ABC-type uncharacteriz 53.3 1E+02 0.0022 28.7 8.5 81 17-98 103-189 (268)
149 PRK10263 DNA translocase FtsK; 50.0 1.5E+02 0.0033 34.9 11.1 15 26-40 77-91 (1355)
150 PF10131 PTPS_related: 6-pyruv 46.5 1.9E+02 0.0042 31.4 11.0 57 17-74 68-124 (616)
151 PF07851 TMPIT: TMPIT-like pro 45.4 3.1E+02 0.0067 27.0 12.6 69 333-403 23-91 (330)
152 PF11177 DUF2964: Protein of u 43.4 1.1E+02 0.0024 21.6 5.6 28 50-77 5-32 (62)
153 PF05297 Herpes_LMP1: Herpesvi 42.7 8.2 0.00018 36.1 0.0 33 16-48 36-76 (381)
154 COG4377 Predicted membrane pro 42.6 74 0.0016 28.4 5.7 36 29-66 15-52 (258)
155 PF07492 Trehalase_Ca-bi: Neut 42.6 18 0.00039 21.2 1.4 11 511-521 14-24 (30)
156 KOG0020 Endoplasmic reticulum 40.8 27 0.00059 35.5 3.2 17 511-527 142-158 (785)
157 COG4097 Predicted ferric reduc 40.7 2.5E+02 0.0055 28.0 9.5 49 26-75 129-178 (438)
158 PF14965 BRI3BP: Negative regu 40.2 2.6E+02 0.0056 24.5 10.4 35 107-141 142-176 (177)
159 PF10086 DUF2324: Putative mem 40.1 1.8E+02 0.0039 26.9 8.4 27 32-60 2-28 (223)
160 COG1230 CzcD Co/Zn/Cd efflux s 40.0 1.6E+02 0.0036 28.4 8.2 28 19-50 54-81 (296)
161 PF02652 Lactate_perm: L-lacta 37.7 2E+02 0.0043 30.6 9.2 56 20-77 176-231 (522)
162 KOG3088 Secretory carrier memb 37.0 47 0.001 31.4 3.9 23 321-343 67-89 (313)
163 PRK02975 putative common antig 36.9 2.7E+02 0.0058 27.6 9.0 36 28-67 159-194 (450)
164 TIGR00799 mtp Golgi 4-transmem 36.6 3.4E+02 0.0074 25.0 9.9 93 17-112 55-157 (258)
165 PF06103 DUF948: Bacterial pro 36.1 2E+02 0.0042 22.0 9.0 32 107-138 16-47 (90)
166 PF10856 DUF2678: Protein of u 36.0 74 0.0016 25.6 4.3 21 54-74 60-80 (118)
167 PF11694 DUF3290: Protein of u 35.6 1.3E+02 0.0028 25.8 6.1 32 28-59 23-54 (149)
168 PF00556 LHC: Antenna complex 35.2 72 0.0016 20.3 3.5 25 50-74 10-34 (40)
169 COG2820 Udp Uridine phosphoryl 34.2 1E+02 0.0022 28.6 5.5 51 452-524 21-71 (248)
170 PF05449 DUF754: Protein of un 33.2 2.2E+02 0.0047 21.6 7.2 44 29-74 4-47 (83)
171 PF10329 DUF2417: Region of un 32.8 2.7E+02 0.0059 25.9 8.1 31 62-92 80-110 (232)
172 PF13829 DUF4191: Domain of un 32.7 2.1E+02 0.0046 26.3 7.3 33 40-74 16-48 (224)
173 PF10990 DUF2809: Protein of u 32.6 1.6E+02 0.0034 22.8 5.6 55 21-78 12-66 (91)
174 KOG0019 Molecular chaperone (H 32.5 31 0.00066 36.3 2.2 17 511-527 102-118 (656)
175 COG1480 Predicted membrane-ass 32.4 7E+02 0.015 27.3 12.1 31 88-118 436-466 (700)
176 COG1033 Predicted exporters of 31.6 4.1E+02 0.009 29.5 10.6 38 23-67 195-234 (727)
177 PF04184 ST7: ST7 protein; In 31.0 1.4E+02 0.0031 31.0 6.5 25 54-80 477-501 (539)
178 PF07698 7TM-7TMR_HD: 7TM rece 31.0 3.8E+02 0.0083 23.8 11.9 25 23-47 101-125 (194)
179 COG3462 Predicted membrane pro 30.7 2.8E+02 0.006 22.1 7.4 29 89-117 51-79 (117)
180 PF15086 UPF0542: Uncharacteri 30.5 2.2E+02 0.0047 20.8 7.8 35 95-146 31-65 (74)
181 PF14362 DUF4407: Domain of un 30.1 5.2E+02 0.011 25.0 15.1 27 33-60 27-53 (301)
182 TIGR02921 PEP_integral PEP-CTE 30.0 2.3E+02 0.0051 30.0 7.8 29 29-58 158-186 (952)
183 PF03591 AzlC: AzlC protein; 29.9 3.4E+02 0.0074 22.9 10.0 47 28-77 3-49 (143)
184 PF13633 N_methyl_3: Prokaryot 29.2 64 0.0014 17.5 2.0 17 25-41 5-21 (22)
185 PF04678 DUF607: Protein of un 28.3 3.9E+02 0.0085 23.6 8.3 55 60-120 98-152 (180)
186 PRK13922 rod shape-determining 28.1 5.3E+02 0.012 24.6 10.4 26 123-148 75-100 (276)
187 COG4420 Predicted membrane pro 27.9 4.4E+02 0.0094 23.5 10.8 13 80-92 86-98 (191)
188 PF13974 YebO: YebO-like prote 27.3 2.4E+02 0.0052 21.2 5.5 15 100-114 9-23 (80)
189 PF10754 DUF2569: Protein of u 27.3 3.9E+02 0.0085 22.8 9.9 42 20-61 54-96 (149)
190 PF07787 DUF1625: Protein of u 27.2 1.1E+02 0.0024 28.7 5.0 25 50-74 181-205 (248)
191 COG5557 Polysulphide reductase 27.1 5.2E+02 0.011 25.4 9.1 71 38-108 72-147 (401)
192 TIGR00346 azlC 4-azaleucine re 26.7 2.9E+02 0.0063 25.5 7.4 48 26-76 10-57 (221)
193 PRK05415 hypothetical protein; 26.6 6.4E+02 0.014 25.0 12.4 24 152-176 140-163 (341)
194 PF07155 ECF-ribofla_trS: ECF- 26.2 4.3E+02 0.0093 22.8 11.9 37 30-66 80-120 (169)
195 PF11382 DUF3186: Protein of u 25.6 3.8E+02 0.0082 26.2 8.4 51 303-353 24-74 (308)
196 COG2456 Uncharacterized conser 24.8 3.6E+02 0.0078 21.5 8.5 15 82-96 62-76 (121)
197 COG3437 Response regulator con 24.6 7.1E+02 0.015 24.8 14.4 70 210-281 26-96 (360)
198 PF06570 DUF1129: Protein of u 24.3 5.4E+02 0.012 23.3 11.6 28 90-117 151-178 (206)
199 PF07234 DUF1426: Protein of u 23.6 2.7E+02 0.0057 21.6 5.2 25 54-78 14-38 (117)
200 TIGR00920 2A060605 3-hydroxy-3 23.6 3.1E+02 0.0068 30.8 7.9 82 23-107 59-142 (886)
201 PF04156 IncA: IncA protein; 23.4 5.2E+02 0.011 22.9 13.3 14 56-69 12-25 (191)
202 PF04955 HupE_UreJ: HupE / Ure 23.3 5.3E+02 0.011 22.9 9.7 73 25-104 82-154 (180)
203 cd07955 Anticodon_Ia_Cys_like 23.0 2.7E+02 0.0059 20.8 5.4 18 343-360 29-46 (81)
204 PF04973 NMN_transporter: Nico 22.7 5.3E+02 0.012 22.7 10.3 81 19-107 42-132 (181)
205 TIGR00219 mreC rod shape-deter 22.6 5.4E+02 0.012 24.8 8.7 15 312-326 71-85 (283)
206 PF15110 TMEM141: TMEM141 prot 22.5 3.1E+02 0.0067 21.2 5.4 32 25-56 27-62 (94)
207 TIGR03778 VPDSG_CTERM VPDSG-CT 22.2 1E+02 0.0022 17.5 2.1 22 25-46 3-24 (26)
208 PF03729 DUF308: Short repeat 21.5 3E+02 0.0065 19.4 6.8 26 50-75 20-45 (72)
209 KOG2493 Na+/Pi symporter [Inor 21.4 3.9E+02 0.0086 27.6 7.5 35 40-75 184-218 (512)
210 COG4965 TadB Flp pilus assembl 21.3 7.8E+02 0.017 24.0 10.6 32 142-173 138-169 (309)
211 COG2807 CynX Cyanate permease 20.8 6E+02 0.013 25.6 8.5 21 21-41 249-269 (395)
212 PF13567 DUF4131: Domain of un 20.8 3.5E+02 0.0075 22.9 6.7 16 29-44 18-33 (176)
213 PF07332 DUF1469: Protein of u 20.5 4.6E+02 0.01 21.1 9.0 10 126-135 108-117 (121)
214 KOG3088 Secretory carrier memb 20.1 6E+02 0.013 24.4 7.9 19 24-42 163-181 (313)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-42 Score=346.34 Aligned_cols=360 Identities=22% Similarity=0.328 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc
Q 008720 122 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI 201 (556)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~ 201 (556)
.++++.+++++....++++++.+.++++++.|..+.+.++++..+.+.+.++++. ++.++++++++....+ .....
T Consensus 488 t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~~~~-~v~i~l~~~~~~~~~~--~~~~~- 563 (890)
T COG2205 488 TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASLLNQ-RVVILLPDDNGKLQPL--GNPDG- 563 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC-ceEEEEecCCcccccc--cCCcc-
Confidence 3558899999999999999999999999999999999999999999999999998 6777888866544111 11100
Q ss_pred cccccccc-CChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEe
Q 008720 202 QIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 280 (556)
Q Consensus 202 ~~~~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~ 280 (556)
+.. +......++.++++-- .+.-..|....+..| +..++...|++.+
T Consensus 564 -----l~~~d~aaa~W~~~~~~~AG-------------~gTdTlpg~~~~~lP--------------l~~~~~~~gvlgv 611 (890)
T COG2205 564 -----LSADDRAAAQWAFENGKPAG-------------AGTDTLPGAKYLYLP--------------LKSGGKVLGVLGV 611 (890)
T ss_pred -----ccHHHHHHhhchhhCCCccc-------------cCCCCCCCCceeEee--------------cccCCceEEEEEe
Confidence 000 1112233333332210 122234555555666 7777888999999
Q ss_pred ccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHH
Q 008720 281 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360 (556)
Q Consensus 281 ~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~ 360 (556)
........++++..++..++++++.|+++..+.++..+.+- ..+.++.+++|++.+||||||||+
T Consensus 612 ~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l---------------~~e~E~lRsaLL~sISHDLRTPLt 676 (890)
T COG2205 612 EPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARL---------------AAERERLRSALLASISHDLRTPLT 676 (890)
T ss_pred cCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhhccccCcHH
Confidence 98877779999999999999999999988877665443321 122345578999999999999999
Q ss_pred HHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcC
Q 008720 361 AIIALSSLLLET--DL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 437 (556)
Q Consensus 361 ~I~~~~~~l~~~--~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 437 (556)
+|.|.++.|... .. +++..+.+..+.+.++++..++++++++.|+++|.++++.++..+.+++.+++..+.......
T Consensus 677 ~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~~~~ 756 (890)
T COG2205 677 AIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTGH 756 (890)
T ss_pred HHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHHHHHHHHHHhhhhcCCc
Confidence 999999999865 33 445778999999999999999999999999999999999999999999999999888776544
Q ss_pred CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEe
Q 008720 438 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVND 517 (556)
Q Consensus 438 ~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D 517 (556)
. +.++++.+++ ++..|...+.||+-||++||+||++++..+-+....+.+ .++++|.|
T Consensus 757 ~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~-------------------~v~~~V~D 814 (890)
T COG2205 757 K--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE-------------------NVVFSVID 814 (890)
T ss_pred e--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc-------------------eEEEEEEe
Confidence 4 6666677766 477899999999999999999999987744444444333 39999999
Q ss_pred cCCCCCCCChhhhhccCcccCCCCCCCCCCceeeeccc
Q 008720 518 SGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 518 nG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
+|+|||++..++|||+||+...... ..|+||||+|||
T Consensus 815 eGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~ 851 (890)
T COG2205 815 EGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICR 851 (890)
T ss_pred CCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHH
Confidence 9999999999999999999776443 679999999997
No 2
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=2e-33 Score=310.13 Aligned_cols=360 Identities=22% Similarity=0.308 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccccc
Q 008720 124 NRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 203 (556)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 203 (556)
.+..+++++....++++++.+.++++++.+....+.+++++.+.+.+.+.++.+ +++|++++++.........
T Consensus 493 ~l~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~~~~~~-~~l~l~~~~g~~~~~~~~~------ 565 (895)
T PRK10490 493 NLTAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLASTFQAR-SQLLLPDDNGKLQPLTHDQ------ 565 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCC-EEEEEEcCCCccccccccc------
Confidence 356677777777888999999999999999999999999999999999999975 4577777554432111100
Q ss_pred ccccccCChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC
Q 008720 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (556)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (556)
...+........++..+.+.-. .....+......+| +..++..+|++.+...
T Consensus 566 -~~~~~~~~~~~w~~~~~~~~g~-------------~~~tl~~~~~~~lP--------------l~~~~~~~Gvl~l~~~ 617 (895)
T PRK10490 566 -GMTPWDDAIARWSFDKGQPAGA-------------GTDTLPGVPYQILP--------------LKSAQKTYGLLAVEPG 617 (895)
T ss_pred -cccchHHHHHHHHHhcCCcccc-------------CcCcCCCCceEEEE--------------EEECCEEEEEEEEecC
Confidence 0011111222233332222100 00112333344566 5556677888888765
Q ss_pred C-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 008720 284 G-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (556)
Q Consensus 284 ~-~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I 362 (556)
. ...|++++..++..++.+++.++++.....+..+. +...+.++.+.+|++.++||+||||++|
T Consensus 618 ~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~---------------~l~~e~e~lr~~lla~isHELrtPLt~I 682 (895)
T PRK10490 618 NLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQA---------------RLASEREQLRNALLAALSHDLRTPLTVL 682 (895)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 4 45788999999999999999999766543221110 0111223446789999999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCce
Q 008720 363 IALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (556)
Q Consensus 363 ~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (556)
.++++++.... ......+.++.+.+...++..++++++++++.+.+...+...++++.+++++++..+......+++.
T Consensus 683 ~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~i~ 762 (895)
T PRK10490 683 FGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPIN 762 (895)
T ss_pred HHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999876542 2233446788899999999999999999999999988999999999999999999998877655544
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCC
Q 008720 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (556)
Q Consensus 441 i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~ 520 (556)
++++.+.+ .+.+|+..+.||+.||++||+||+++|+.+.+....+++ .+.|+|+|||+
T Consensus 763 --l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~-------------------~v~I~V~D~G~ 820 (895)
T PRK10490 763 --LSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE-------------------RLQLDVWDNGP 820 (895)
T ss_pred --EEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC-------------------EEEEEEEECCC
Confidence 44555544 477899999999999999999999876543333333332 39999999999
Q ss_pred CCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 521 Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|||++..+++|+|||+++... ..+|+|+||++||+
T Consensus 821 GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Ivk~ 855 (895)
T PRK10490 821 GIPPGQEQLIFDKFARGNKES-AIPGVGLGLAICRA 855 (895)
T ss_pred CCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHHHH
Confidence 999999999999999876432 33599999999984
No 3
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-30 Score=246.35 Aligned_cols=404 Identities=16% Similarity=0.119 Sum_probs=301.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHH
Q 008720 25 DILIALAYFSIPVELIYFVQK---SAFFPYRWVLMQFGSFIILCGLTHFISLWTFT-VHSKAVAVVMTIAKMACAFVSCI 100 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~---~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~-~~~~~~~~~~~~~~~~~~~~s~~ 100 (556)
+..-++|++..++..+|+.++ +..++.+.+.. +.++ +|++.+|+.|+.+. +.+.++..++.+..||...+|++
T Consensus 105 a~~c~iSti~~G~l~g~~~~~~~r~~R~~~p~~~~-~v~~--~~E~lqM~iIL~~a~~~~~av~lVs~i~iPMil~Nsvg 181 (557)
T COG3275 105 ALSCAISTILEGLLGGLVHLYLIRRGRWDSPIVAA-LVGI--VAEMLQMLIILVIARPFADAVDLVSNIAIPMILGNSVG 181 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHH-HHHH--HHHHHHHHHHhhccCcHHHHHHHHhhccchhHhhcchh
Confidence 444567788888888887553 33445343433 4444 78888888888654 44667777777888887778888
Q ss_pred HHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH-hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCcee
Q 008720 101 TALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEET-GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEEC 179 (556)
Q Consensus 101 ~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~ 179 (556)
+++++.. +..++..+++-...+... +...++....++++.+.++ +..+++.+.+.++++++
T Consensus 182 aa~fm~i-----------------~~~~~~~~E~~~a~~a~~aL~iA~~tlplfr~gfn~es-~~~va~Ii~~~~~~~AV 243 (557)
T COG3275 182 AALFMRI-----------------LLDRRAKFEKYAAVQAKLALKIANKTLPLFRQGFNEES-LMKVAEIIYEELGAGAV 243 (557)
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcChhh-HHHHHHHHHHHhCCCeE
Confidence 8877766 344444444433333333 4445555566888888877 78999999999999999
Q ss_pred EEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccC
Q 008720 180 ALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSN 259 (556)
Q Consensus 180 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 259 (556)
+| +++.-.+++.......+-.+.++..+...++++.++........+ + .|.+..|+.++.+..|
T Consensus 244 ai-----Td~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~e~---~--~csh~~c~l~s~lViP------ 307 (557)
T COG3275 244 AI-----TDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGNEV---Y--ECSHPTCKLGSALVIP------ 307 (557)
T ss_pred Ee-----cCHHHHHHhhcccccccCCCCeeccHHHHHHHhhCCEEEEccchh---h--ccCCCCCCcCCceEee------
Confidence 99 777666666555444555577888899999999999887765554 2 2668889999999999
Q ss_pred ccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 260 FQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEK 339 (556)
Q Consensus 260 ~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 339 (556)
+..++.++|.+.++...++.++..+.++.+.+|..++.++ ++.+.+++.+.+++.+.+
T Consensus 308 --------L~~~g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQi--------------e~ge~e~q~~ll~~AEik 365 (557)
T COG3275 308 --------LRGKGRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQI--------------EAGEAERQRELLKQAEIK 365 (557)
T ss_pred --------cccCCceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHH
Confidence 6667888999999999999999999999999999999888 455555556667777788
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcccc-cccee
Q 008720 340 AIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELD-NGPFN 418 (556)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~-~~~~~ 418 (556)
++|++-+ +|+++|.||+|++. ++.+.++..+++-++..|.|-. ++.+ .+.++
T Consensus 366 ~LqaQvn-----PHFLFNaLNTIsa~-------------------IR~npdkAreLil~LS~yfR~N---L~~~~~~~v~ 418 (557)
T COG3275 366 ALQAQVN-----PHFLFNALNTISAV-------------------IRRNPDKARELILYLSTYFRYN---LENNTQEIVT 418 (557)
T ss_pred HHHhccC-----hHHHHHHHHHHHHH-------------------hcCChHHHHHHHHHHHHHHHHH---hcCCcceEee
Confidence 8888988 99999999999988 7788888999999999998843 3333 55799
Q ss_pred HHHHHHHHHHHHHHhhhcCC--ceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-----CCCeEEEEEEeecCCC
Q 008720 419 LQIVLREVIKLIKPVASCKK--LSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-----KEGYVSIIASVAKPES 491 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~--i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~-----~~g~~~i~~~~~~~~~ 491 (556)
|.+-++++-++++.+..+.+ .++.+++|+... +......+++.|++||+||+ ..|.+.+.+...+.+
T Consensus 419 L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~-----~~~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~- 492 (557)
T COG3275 419 LSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR-----QVQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDAD- 492 (557)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh-----hccCchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCe-
Confidence 99999999999987766554 444555544432 22334567889999999997 236666666655543
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.+.|+|||.|++|+. ..|+|+||+++++
T Consensus 493 -------------------l~i~VeDng~li~p~~-----------------~~g~giGL~nv~~ 521 (557)
T COG3275 493 -------------------LRIEVEDNGGLIQPDE-----------------EDGTGIGLANVHK 521 (557)
T ss_pred -------------------EEEEEecCCCCcCCCC-----------------CCCCChHHHHHHH
Confidence 9999999999999861 2488999998864
No 4
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=8.6e-30 Score=282.52 Aligned_cols=384 Identities=16% Similarity=0.217 Sum_probs=256.6
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChH--HHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccccc
Q 008720 126 ADELDREMGLILTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 203 (556)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 203 (556)
..++++....++++.+..+.+.+++..+......+ +.++.+.+.+.+.++++.|++++.+.++............
T Consensus 259 ~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--- 335 (828)
T PRK13837 259 VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTP--- 335 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCC---
Confidence 44455556666777777888899998887765554 8899999999999999999999988776554432210000
Q ss_pred cccccc-CChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc
Q 008720 204 GSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (556)
Q Consensus 204 ~~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (556)
...++. .......+..........+........ ......+....+++| +..++...|++.+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~~~~~~g~l~~~~ 399 (828)
T PRK13837 336 DPVWPDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLA--------------FKSGDRIVALLGLGR 399 (828)
T ss_pred CCCchHHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEE--------------eccCCceEEEEEecc
Confidence 001110 011111222222222221111111100 111122334445555 445556677776655
Q ss_pred CC-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 008720 283 DG-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHA 361 (556)
Q Consensus 283 ~~-~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~ 361 (556)
.. ...|.+.+..++..++.+++.++.+.+...+..+.++++ +. .+..+++++|+++++||+||||+.
T Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l-------~~-----~~rl~~l~~~~~~iaHeLrtPL~~ 467 (828)
T PRK13837 400 QRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRL-------EH-----ARRLEAVGTLASGIAHNFNNILGA 467 (828)
T ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHHHHhhHHhhhHHHH
Confidence 43 345568999999999999999987666544433322222 11 122345788999999999999999
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCce
Q 008720 362 IIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (556)
Q Consensus 362 I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (556)
|.++++++... ..+.+.+++++.+.+.++++..++++++++++... ...+++++.+++++++..+.... .+++.
T Consensus 468 I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i~ 542 (828)
T PRK13837 468 ILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGVE 542 (828)
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCcE
Confidence 99999988754 34556788999999999999999999999998543 34568999999999999887654 46777
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecC
Q 008720 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (556)
Q Consensus 441 i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG 519 (556)
+.++.++.. ..+.+|+..+.|++.||+.||+||+++++ +.+.+....... ...........+.++.|+|+|||
T Consensus 543 l~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~-----~~~~~~~~~~~~~~v~i~V~D~G 616 (828)
T PRK13837 543 LDFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRA-----PKVLSHGVLPPGRYVLLRVSDTG 616 (828)
T ss_pred EEEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccc-----ccccccccCCCCCEEEEEEEECC
Confidence 777765543 45778999999999999999999987644 444444331110 00001111112336999999999
Q ss_pred CCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 520 CGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 520 ~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+|||++.+++||+|||+++. +|+|+||++||+
T Consensus 617 ~GI~~e~~~~iFe~F~~~~~-----~G~GLGL~i~~~ 648 (828)
T PRK13837 617 AGIDEAVLPHIFEPFFTTRA-----GGTGLGLATVHG 648 (828)
T ss_pred CCCCHHHHHHhhCCcccCCC-----CCCcchHHHHHH
Confidence 99999999999999998764 589999999984
No 5
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=3e-29 Score=272.53 Aligned_cols=340 Identities=19% Similarity=0.200 Sum_probs=238.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceE
Q 008720 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMR 225 (556)
Q Consensus 146 l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (556)
..++++.+.+..+.+++++.+++.+.+.++++.+++|+.++++........++.+.. ....+...+.+......+....
T Consensus 307 ~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 385 (679)
T TIGR02916 307 WLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLA-QAFEPSDSAFCQFLQESGWIIN 385 (679)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCc-ccCCCCCCHHHHHHHhCCCccc
Confidence 468889999999999999999999999999999999999887776665544443222 1234444444444444443333
Q ss_pred ccCCCchhhh-hh--cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHHHHHHHH
Q 008720 226 LPYNCPLARI-RL--LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVAD 301 (556)
Q Consensus 226 l~~~~~~~~~-~~--~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~ 301 (556)
..+....... .. ............+++| +..++...|++.+..+ .++.++.++.++++.++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vP--------------L~~~~~~~G~l~l~~~~~~~~~~~e~~~lL~~l~~ 451 (679)
T TIGR02916 386 LEEARSEPDHYSGLVLPEWLREIPNAWLIVP--------------LISGEELVGFVVLARPRTAGEFNWEVRDLLKTAGR 451 (679)
T ss_pred chhhcCCcccccccccchhhhcCCCceEEEE--------------eccCCEEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 2222111100 00 0000011233456777 4445556777777654 456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCH-HHHH
Q 008720 302 QVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRV 380 (556)
Q Consensus 302 ~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~-~~~~ 380 (556)
+++.++++.+..++..+. +..++.+++.+.++||+|||++.+....+...+...++ ..++
T Consensus 452 q~a~~l~~~~~~~~l~~~-------------------~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~ 512 (679)
T TIGR02916 452 QAASYLAQMEASEALAEA-------------------RQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDD 512 (679)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHH
Confidence 999999766554332211 11233567888999999999999988887776554444 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHH
Q 008720 381 MIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRL 460 (556)
Q Consensus 381 ~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l 460 (556)
.++.+.+..+++.++++++.+... ..+..++++.++++++.+..... ... +.++++.+ ..+.+|+..+
T Consensus 513 ~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~--~~~--~~l~~~~~--~~v~~d~~~l 580 (679)
T TIGR02916 513 MLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRAQ--GPR--PEVSIDTD--LSVRADRERL 580 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhhh--cCC--ceEEeCCC--ceEEECHHHH
Confidence 788889999999999888765432 45666899999999998876543 233 34444333 3477899999
Q ss_pred HHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC-hhhhhccCcccC
Q 008720 461 MQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-IPLLFTKFAQSR 538 (556)
Q Consensus 461 ~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~-~~~iF~~f~~~~ 538 (556)
.+++.|++.||+||++++ .+.+.....+ + ++.|+|+|||+|||++. .+++|+||++++
T Consensus 581 ~~vl~nLl~NAik~~~~~~~I~I~~~~~~-~-------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~ 640 (679)
T TIGR02916 581 ERVLGHLVQNALEATPGEGRVAIRVEREC-G-------------------AARIEIEDSGCGMSPAFIRERLFKPFDTTK 640 (679)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEcC-C-------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCCC
Confidence 999999999999999764 4555444333 2 38999999999999999 999999999876
Q ss_pred CCCCCCCCCceeeecccC
Q 008720 539 GSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 539 ~~~~~~~G~GlGL~i~k~ 556 (556)
+ +|+|+||++||+
T Consensus 641 ~-----~G~GLGL~i~~~ 653 (679)
T TIGR02916 641 G-----AGMGIGVYECRQ 653 (679)
T ss_pred C-----CCcchhHHHHHH
Confidence 4 589999999984
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.7e-30 Score=288.22 Aligned_cols=200 Identities=33% Similarity=0.544 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccce
Q 008720 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
+++++.+.+|++.++||+||||++|.|+++++.+...+++.+++++.+..+++++..++++++++++++.+...+.+.++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 34455678999999999999999999999999888888888999999999999999999999999999999989999999
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCC
Q 008720 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
++.++++++...+...+..+++.+.++.+++.+..+.+|+.++.||+.||++||+||+++|.+.+......++
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD------- 429 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC-------
Confidence 9999999999999999999999999988877776788899999999999999999999888877776655333
Q ss_pred CCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCC-CCCC-CCCCceeeecccC
Q 008720 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG-SSCQ-TPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~-~~~~-~~G~GlGL~i~k~ 556 (556)
.+.|+|.|||+|||++.+++||+|||+++. ..++ .+|+|+||++||+
T Consensus 430 ------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~ 478 (779)
T PRK11091 430 ------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKR 478 (779)
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHH
Confidence 399999999999999999999999999853 2222 4699999999984
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.97 E-value=4e-30 Score=280.93 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008720 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (556)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~ 405 (556)
.++++++++++++++++++.+|+++++||+||||++|.++++.+.....+++.+++++.+.++++++..+++++++++++
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777788888999999999999999999999999999887778888999999999999999999999999999
Q ss_pred hcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Q 008720 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (556)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~ 485 (556)
+.+...+..+++++.+++++++..+...+..+++.+.++.+.+.+..+.+|+.++.||+.||++||+||++.|.+.+.+.
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~ 591 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVD 591 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999999999999999999999999988877666667889999999999999999999999888777665
Q ss_pred eecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
...... .++.|+|.|||+|||++.+++||+||++++......+|+||||+|||+
T Consensus 592 ~~~~~~-----------------~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~ 645 (894)
T PRK10618 592 QDESSP-----------------DRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQ 645 (894)
T ss_pred EccCCC-----------------cEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHH
Confidence 433211 259999999999999999999999999877654445699999999984
No 8
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.97 E-value=1.8e-29 Score=255.27 Aligned_cols=208 Identities=21% Similarity=0.349 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 328 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-------PEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
.+++++++++.+.++.+++|+++++||+||||++|.+.++.+.....+ +..+++++.+....+++..++++++
T Consensus 135 ~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll 214 (380)
T PRK09303 135 FVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLL 214 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666677899999999999999999999999999854322 3367788999999999999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~ 480 (556)
++++.+.+...+...++++.+++++++..+......+++.+.++++.+.+. +.+|+..+.||+.||++||+||+++|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~~~~~~ 293 (380)
T PRK09303 215 EVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYTPEGGT 293 (380)
T ss_pred HHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcCCCCce
Confidence 999999888888889999999999999999999999999999988776654 7789999999999999999999987654
Q ss_pred EEEE-EeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 481 SIIA-SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.+. ....+. ++.|+|.|||+|||++..++||+|||+++. ....+|+|+||++||+
T Consensus 294 I~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~~~ 350 (380)
T PRK09303 294 ITLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVCRR 350 (380)
T ss_pred EEEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHHHH
Confidence 4333 232222 499999999999999999999999999876 3345699999999984
No 9
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-30 Score=238.27 Aligned_cols=199 Identities=23% Similarity=0.418 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccc
Q 008720 339 KAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE--QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGP 416 (556)
Q Consensus 339 ~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~ 416 (556)
+..+++.+|.+++|||+||||+++.++++.|.+....+. ..+++..-....+||..++++|+.++|++..+..++.+.
T Consensus 220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~ 299 (459)
T COG5002 220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEW 299 (459)
T ss_pred HHHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHH
Confidence 334557789999999999999999999999998754433 678888899999999999999999999999999999999
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCC
Q 008720 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~ 496 (556)
+++..++..+++.+....+...+.--+.--+..+.++..|++++.||+.|+++||+||+|+|+.+.......+.
T Consensus 300 inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~------ 373 (459)
T COG5002 300 INFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET------ 373 (459)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc------
Confidence 99999999999999887655444311112255577888999999999999999999999987655444433332
Q ss_pred CCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCC-CCCceeeecccC
Q 008720 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~-~G~GlGL~i~k~ 556 (556)
++.++|.|.|.|||.+.+++||++||+.+...++. +|||+||+|+|.
T Consensus 374 -------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIake 421 (459)
T COG5002 374 -------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred -------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHH
Confidence 59999999999999999999999999987664433 699999999973
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.97 E-value=5.5e-29 Score=276.22 Aligned_cols=212 Identities=30% Similarity=0.511 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008720 325 EQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+.+++++.++++++++++++..|++.++||+||||+.|.++++++.....+++.+++++.+..+++++..++++++++++
T Consensus 428 ~~e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~sr 507 (924)
T PRK10841 428 KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 507 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777778889999999999999999999999999988888888899999999999999999999999999
Q ss_pred hhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 008720 405 LEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIA 484 (556)
Q Consensus 405 ~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~ 484 (556)
++.+...++..++++.+++++++..+...+..+++.+.+.++++.+..+.+|+.++.||+.||++||+||+++|.+.+.+
T Consensus 508 ie~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v 587 (924)
T PRK10841 508 IESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHV 587 (924)
T ss_pred hcCCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 99998899999999999999999999999889999999888877777788999999999999999999999988877666
Q ss_pred EeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
...++ ++.|+|+|||+|||++.++++|+|||+.+.... ..+|+|+||++||+
T Consensus 588 ~~~~~--------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~ 640 (924)
T PRK10841 588 RVDGD--------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEK 640 (924)
T ss_pred EEeCC--------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHH
Confidence 55322 499999999999999999999999998765433 33699999999984
No 11
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=9.6e-27 Score=229.32 Aligned_cols=205 Identities=26% Similarity=0.406 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 327 NVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
..++.+.++++++.|+....|...++|++++||+.|+++++++... ..+++.++++..+.+....+..++++++.|+
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445566778888999999999999999999999999999999865 6788899999999999999999999999999
Q ss_pred HhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 008720 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (556)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~ 483 (556)
++.....+ .++.|+.+.+++++..+.......++.+.+. + +|. +.+|+.++.|+++||+.||+||..++...+.
T Consensus 587 ~l~~~~~~--l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGLTEAP--LQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhccccCC--CCCcchHHHHHHHHHhcccccccccceEEec--c-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 98765444 4489999999999999999988888888763 4 664 7789999999999999999999976644444
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.....+. -+.++|.|||.||++...++||..|.+.+... .+.|+|+||+|||+
T Consensus 661 I~~~r~ed------------------~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~-~y~gtG~GL~I~kk 714 (750)
T COG4251 661 ISAERQED------------------EWTFSVRDNGIGIDPAYFERIFVIFQRLHSRD-EYLGTGLGLAICKK 714 (750)
T ss_pred EeeeccCC------------------ceEEEecCCCCCcCHHHHHHHHHHHHhcCchh-hhcCCCccHHHHHH
Confidence 43322221 28999999999999999999999998876543 45699999999985
No 12
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.96 E-value=6.8e-26 Score=257.02 Aligned_cols=212 Identities=38% Similarity=0.622 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 008720 330 LDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS 409 (556)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~ 409 (556)
+..++++.+++++.+.+|++.++||+||||++|.++++.+.....++..+++++.+.++++++..++++++++++++.+.
T Consensus 279 l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~ 358 (919)
T PRK11107 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGK 358 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444555666777889999999999999999999999998887888889999999999999999999999999999999
Q ss_pred ccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecC
Q 008720 410 LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKP 489 (556)
Q Consensus 410 ~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~ 489 (556)
..+...++++.+++++++..+...+..+++.+.++++++.+..+.+|+.++.||+.||++||+||+++|.+.+.+.....
T Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~ 438 (919)
T PRK11107 359 LVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL 438 (919)
T ss_pred cEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec
Confidence 88899999999999999999999999999999999887777678889999999999999999999998887666554322
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.. +..++.|+|.|||+|||++.++++|+||++.+...+ +.+|+|+||++||+
T Consensus 439 ~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~ 491 (919)
T PRK11107 439 SN---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQK 491 (919)
T ss_pred CC---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHH
Confidence 11 122589999999999999999999999998765533 34699999999984
No 13
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.96 E-value=7.5e-28 Score=274.22 Aligned_cols=205 Identities=36% Similarity=0.600 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcc
Q 008720 332 SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE 411 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~ 411 (556)
.++.+.+++++++.+|++.++||+||||+.|.++++++.+...+++.+++++.+.++++++..++++++++++++.+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~ 531 (968)
T TIGR02956 452 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLS 531 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 34556677788899999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCC
Q 008720 412 LDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPES 491 (556)
Q Consensus 412 l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~ 491 (556)
+...++++.++++++...+...+..+++.+.++++++.+..+.+|+..+.||+.||++||+||++.|.+.+.+....+.
T Consensus 532 ~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~- 610 (968)
T TIGR02956 532 ISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS- 610 (968)
T ss_pred eeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC-
Confidence 9999999999999999999999999999999998877777788999999999999999999999988877766554432
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.++|+|.|||+|||++.+++||+||++.+ .....+|+|+||+|||+
T Consensus 611 ------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i~~~ 656 (968)
T TIGR02956 611 ------------------SLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAISQR 656 (968)
T ss_pred ------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHHHHH
Confidence 18999999999999999999999999987 33344699999999984
No 14
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.96 E-value=1.6e-27 Score=270.33 Aligned_cols=211 Identities=30% Similarity=0.474 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (556)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~ 402 (556)
+.++..+++.++++.+++++.+.+|++.++||+||||++|.++++++.....+++.+++++.+...++++..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666777777888999999999999999999999999988888889999999999999999999999999
Q ss_pred hHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 008720 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482 (556)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i 482 (556)
++++.+...+..+++++.++++++...+......+++.+.+.++++.+..+.+|+.++.|++.||++||+||+++|.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999999899999998888877777888999999999999999999999888777
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 483 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+...++ ++.|+|+|||+|||++.+++||+||++++.. .+|+||||++||+
T Consensus 537 ~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~ 587 (921)
T PRK15347 537 RVKRHEQ--------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIASS 587 (921)
T ss_pred EEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHHHH
Confidence 6654332 4999999999999999999999999987653 3699999999984
No 15
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.95 E-value=9.4e-27 Score=230.00 Aligned_cols=186 Identities=24% Similarity=0.392 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSL---LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
..+++.++++||+++||++|.++++. +.+....++....+..|..-.+||..+..+|..|++-... ...++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~----a~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRD----AAGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCcc----ccCCccH
Confidence 56889999999999999999987765 4566778888999999999999999999999999985433 2568999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEeecCCCCCCCC
Q 008720 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~ 496 (556)
.+.++++...+....+..+..+..+.++. +.++.+++.+|+||+.||+.||+++.. ++.+.+.....++
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~------- 530 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGG------- 530 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCC-------
Confidence 99999999999999988888888776443 557889999999999999999999974 3545555544443
Q ss_pred CCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|.|||+||+++...++|+||||+|+.+ +|.||||+||.+
T Consensus 531 -------------~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~---~GLGLGLaIS~~ 574 (603)
T COG4191 531 -------------QVVLTVRDNGPGIAPEALPHLFEPFFTTKPVG---KGLGLGLAISQN 574 (603)
T ss_pred -------------eEEEEEccCCCCCCHHHHHhhcCCccccCccc---CCcchhHHHHHH
Confidence 39999999999999999999999999999765 699999999863
No 16
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.95 E-value=1.1e-26 Score=262.79 Aligned_cols=213 Identities=32% Similarity=0.539 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
.++.+...+.+.++.+.+++.+++..|++.++||+||||+.|.++++++.....++..+++++.+.+..+++..++++++
T Consensus 421 ~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 500 (914)
T PRK11466 421 AELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDIL 500 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777778889999999999999999999999999999888888889999999999999999999999
Q ss_pred HHhHhhcC--CccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 008720 401 DLSRLEDG--SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (556)
Q Consensus 401 ~~~~~~~~--~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g 478 (556)
++++.+.+ ...+..+++++.+++++++..+......+++.+.++++++.|..+.+|+..+.||+.||++||+||+++|
T Consensus 501 ~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g 580 (914)
T PRK11466 501 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEG 580 (914)
T ss_pred HHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCC
Confidence 99998876 3556778999999999999999999999999999988877777788999999999999999999999988
Q ss_pred eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 479 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 479 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.+.....+. .+.|.|.|||+|||++.++++|+||++.+.. .+|+|+||++||+
T Consensus 581 ~I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~ 635 (914)
T PRK11466 581 SIVLRSRTDGE--------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTISSR 635 (914)
T ss_pred eEEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHHHH
Confidence 77766554322 3899999999999999999999999976433 3699999999974
No 17
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.95 E-value=2.3e-25 Score=230.12 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+.+|+++++||+||||++|.++++++.+.. .++...++++.+.+.++++..++++++++++.+.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 557999999999999999999999988654 3456677899999999999999999999999887766666678999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCC
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
++.+........ .+++.+.++.++.. .+.+|+..+.+++.||+.||+||+++|+.+.+....+++
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~------------ 348 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ------------ 348 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC------------
Confidence 988877776554 56777777765543 467899999999999999999999876543333333332
Q ss_pred CCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.|+|.|||+|||++.++++|+|||+++...+ +.+|+|+||++||+
T Consensus 349 -------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~ 396 (430)
T PRK11006 349 -------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKH 396 (430)
T ss_pred -------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHH
Confidence 389999999999999999999999998765532 34599999999984
No 18
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-26 Score=209.82 Aligned_cols=194 Identities=26% Similarity=0.351 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+-..+.++++||+||||..|.|.+++|.....++..+++-+.|-+.++|+..+++.+.-++. ..+....+++++.+
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~V 206 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEV 206 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHHH
Confidence 45679999999999999999999999998877777889999999999999999999966654 22455568999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEeecCCCCCCCCCC
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---E-GYVSIIASVAKPESLSDWRPP 498 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~---~-g~~~i~~~~~~~~~~~~~~~~ 498 (556)
++.+....+..+ ..++.+.-++++.+|. +.+|+++|.|+|.|++.||..+.. . ++.++..+ ....
T Consensus 207 LerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrT-R~~~-------- 275 (363)
T COG3852 207 LERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRT-RTGI-------- 275 (363)
T ss_pred HHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEe-ccce--------
Confidence 999999998876 4788888899999997 778999999999999999999875 2 23333322 1110
Q ss_pred CCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..++.....+-.+.++|.|||+|+|++.++++|.||.+++. +||||||+++.+
T Consensus 276 q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~-----~GsGLGLala~~ 328 (363)
T COG3852 276 QLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE-----GGTGLGLALAQN 328 (363)
T ss_pred EEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----CCccccHHHHHH
Confidence 11122222233467889999999999999999999998874 489999999864
No 19
>PRK10364 sensor protein ZraS; Provisional
Probab=99.93 E-value=1e-22 Score=212.14 Aligned_cols=185 Identities=23% Similarity=0.384 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHH
Q 008720 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
...+++.+.++||+||||++|.++++.+.+. ..+++.++.++.+.+..+++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 4467899999999999999999999998764 3345667788889999999999999999998733 4456689999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEeecCCCCCCCCCCC
Q 008720 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~ 499 (556)
+++++++..+...+..+++.++++.++..+ .+.+|+..+.+++.||+.||+||+++++ +.+..... ++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~-~~--------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES-GA--------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-CC---------
Confidence 999999999999998999999998766554 3567999999999999999999986544 44444433 22
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++..+++|++|++++. +|+|+||++||+
T Consensus 380 ----------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-----~g~GlGL~iv~~ 421 (457)
T PRK10364 380 ----------GVKISVTDSGKGIAADQLEAIFTPYFTTKA-----EGTGLGLAVVHN 421 (457)
T ss_pred ----------eEEEEEEECCCCCCHHHHHHHhCccccCCC-----CCCcccHHHHHH
Confidence 399999999999999999999999997753 489999999984
No 20
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.93 E-value=7.7e-25 Score=254.23 Aligned_cols=212 Identities=26% Similarity=0.445 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 008720 329 ALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (556)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~ 407 (556)
+++..+++..++++++++|++.++||+||||+.|.++++++.....+. +..+.++.+....+++..++++++++++++.
T Consensus 697 ~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~ 776 (1197)
T PRK09959 697 ALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIES 776 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444455556667889999999999999999999999987654444 4456888899999999999999999999998
Q ss_pred CCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEee
Q 008720 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA 487 (556)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~ 487 (556)
+...+..+++++.+++++++..+......+++.+.+..+...+..+.+|+..+.||+.||+.||+||+++|.+.+.....
T Consensus 777 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~ 856 (1197)
T PRK09959 777 GNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLG 856 (1197)
T ss_pred CCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 88888899999999999999999998888999888765433344577899999999999999999999988766555432
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.... +...+.|+|+|||+|||++.+++||+||++++... ..+|+|+||++||+
T Consensus 857 ~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i~~~ 909 (1197)
T PRK09959 857 HIDD---------------NHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMICKE 909 (1197)
T ss_pred eecC---------------CceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHHHHH
Confidence 1110 11248899999999999999999999999876532 34599999999984
No 21
>PRK10604 sensor protein RstB; Provisional
Probab=99.93 E-value=1.5e-24 Score=223.82 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 324 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
.+....+..+.+++++..+.+.+|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.++
T Consensus 192 ~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~~ 266 (433)
T PRK10604 192 ERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTYA 266 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777778889999999999999999999888876322 2222 237788899999999999999
Q ss_pred HhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 008720 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (556)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~ 483 (556)
+.+.+......+++++.+++++++..++.....+++.+.+ +.. +..+.+|+..+.+++.||++||+||++ +.+.+.
T Consensus 267 rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~ 342 (433)
T PRK10604 267 RLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVS 342 (433)
T ss_pred hccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 9998888888889999999999999988776666665554 333 234567999999999999999999986 556666
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+...++ .+.|+|+|||+|||++..+++|+|||+.+.+.. +.+|+|+||++||+
T Consensus 343 ~~~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~ 396 (433)
T PRK10604 343 LLLDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHS 396 (433)
T ss_pred EEEECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHH
Confidence 554433 389999999999999999999999998765543 33589999999974
No 22
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.92 E-value=4e-24 Score=225.58 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHH
Q 008720 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ 421 (556)
+...+++..++|++||||+.|.++++++.....+.......+.+.+...++...++.+.++.. ........++|+..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHH
Confidence 345677888889999999999999999876533322233444444455555555555555543 22344566899999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe---EEEEEEeecCCCCCCCCCC
Q 008720 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPP 498 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~---~~i~~~~~~~~~~~~~~~~ 498 (556)
++++++..+...+..+++.+.++.+...+. +.+|+.++.||+.||++||+||+++++ ..+.+.....+.
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~------- 422 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD------- 422 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC-------
Confidence 999999999988888999999887666664 678999999999999999999986652 223332222221
Q ss_pred CCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.+++||+|||+++... .+|+||||++||+
T Consensus 423 -----------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~i~~~ 467 (494)
T TIGR02938 423 -----------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLSVAQE 467 (494)
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHHHHHH
Confidence 48999999999999999999999999987653 4699999999984
No 23
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.92 E-value=4.2e-24 Score=222.28 Aligned_cols=206 Identities=19% Similarity=0.264 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 324 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
......+....++.++..+...+|++.++||+||||+.|.++++.+....... ..+....+.+..+++..+++++++.+
T Consensus 246 ~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~-~~~~~~~~~~~i~ri~~~i~~ll~~~ 324 (485)
T PRK10815 246 TSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS-VEQAEPIMLEQISRISQQIGYYLHRA 324 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555666778999999999999999999999887653211 22334456778888999999999999
Q ss_pred HhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 008720 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (556)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~ 483 (556)
+...+...+..+.+++..++++++..+......+++.+.++.+++. .+.+|+..+.+++.||+.||+||++++ +.+.
T Consensus 325 ~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~ 401 (485)
T PRK10815 325 SMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLEF-VEIS 401 (485)
T ss_pred HhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEE
Confidence 9888777778889999999999999999988889999888775443 466799999999999999999999753 4444
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
....++ ++.|+|+|||+|||++.++++|+||++.+.. .+|+|+||++||+
T Consensus 402 ~~~~~~--------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~---~~G~GLGL~Ivk~ 451 (485)
T PRK10815 402 ARQTDE--------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL---RPGQGLGLSVARE 451 (485)
T ss_pred EEEeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC---CCCcchhHHHHHH
Confidence 433322 3899999999999999999999999976543 2599999999974
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.92 E-value=7.6e-24 Score=228.99 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~ 401 (556)
++.+..+.++.+..++++..+...++++.++||++||++.|.+.++.+.....+.+..++++.+.+.++++..+++++..
T Consensus 463 EIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~ 542 (703)
T TIGR03785 463 EIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSE 542 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666777777778899999999999999999999999987777778888999999999999999999999
Q ss_pred HhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEE
Q 008720 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (556)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~ 481 (556)
+++++........+++++.+++++++..++.....+++.+.++ .+ +..+.+|+..+.+++.||+.||+||+++++.+
T Consensus 543 ~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I 619 (703)
T TIGR03785 543 ATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ET-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLI 619 (703)
T ss_pred HHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeE
Confidence 9998877667778899999999999999988877766666553 33 23577899999999999999999999876543
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCC-CCCceeeecccC
Q 008720 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRR 556 (556)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~-~G~GlGL~i~k~ 556 (556)
.+....+++ ++.|+|+|||+|||++..+++|+|||+++...... +|+||||++||+
T Consensus 620 ~I~~~~~~~-------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~ 676 (703)
T TIGR03785 620 EVGLSQNKS-------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRL 676 (703)
T ss_pred EEEEEEcCC-------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHH
Confidence 333333332 48999999999999999999999999877544333 489999999974
No 25
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-22 Score=198.31 Aligned_cols=182 Identities=21% Similarity=0.300 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhcC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcccccccee
Q 008720 345 NDFRAVMNHEMRTLMHAIIALSSLLLET---DLTP---EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (556)
Q Consensus 345 ~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~---~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~ 418 (556)
++-++-++||+||||+.|...++.+..+ ..++ ..++..+.|.+.+..+..|++++..|+|+. ++..+..|
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~d 562 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKSD 562 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcch
Confidence 4556668999999999999999888764 2222 346778899999999999999999999965 56667999
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-----Ce-EEEEEEeecCCCC
Q 008720 419 LQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-----GY-VSIIASVAKPESL 492 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~-----g~-~~i~~~~~~~~~~ 492 (556)
|+++++++...++.. ...+.+..+..++ |....+|+..+.|+|.|++.||.++..+ +. ..+.....+.++
T Consensus 563 L~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g- 638 (712)
T COG5000 563 LRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG- 638 (712)
T ss_pred HHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC-
Confidence 999999999998754 3567777777655 6667779999999999999999998632 11 122332222221
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+++.|.|||.|+|.+.++++||||.|++. +|||+||+||||
T Consensus 639 -----------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~-----KGTGLGLAiVKk 680 (712)
T COG5000 639 -----------------RIVVDVIDNGKGFPRENRHRALEPYVTTRE-----KGTGLGLAIVKK 680 (712)
T ss_pred -----------------eEEEEEecCCCCCChHHhhhhccCceeccc-----ccccccHHHHHH
Confidence 499999999999999999999999998874 599999999996
No 26
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.91 E-value=1.8e-23 Score=210.84 Aligned_cols=186 Identities=20% Similarity=0.220 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH-HH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL-QI 421 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l-~~ 421 (556)
.+..|.+.++||+||||+.+.+.++.+..... . ....+.+..+++...+++++.+++............+++ .+
T Consensus 136 ~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~ 210 (356)
T PRK10755 136 QERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLED 210 (356)
T ss_pred HHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHH
Confidence 34568999999999999999999988764322 1 233455667788899999999999765555556667888 89
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCC
Q 008720 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
++..+...+......+++.+.++.++ .+..+.+|+..+.+++.|+++||+||+++++.+.+....+++
T Consensus 211 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~----------- 278 (356)
T PRK10755 211 VILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG----------- 278 (356)
T ss_pred HHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC-----------
Confidence 99998888888887888887774323 344577899999999999999999999765433333333333
Q ss_pred CCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+|||++..+++|+||++.+.. .+|+|+||++||+
T Consensus 279 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GlGL~i~~~ 322 (356)
T PRK10755 279 --------GAVLAVEDEGPGIDESKCGELSKAFVRMDSR---YGGIGLGLSIVSR 322 (356)
T ss_pred --------EEEEEEEECCCCCCHHHHHHhCCCeEeCCCC---CCCcCHHHHHHHH
Confidence 3899999999999999999999999976532 3689999999974
No 27
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.91 E-value=5.4e-23 Score=215.31 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+....+.....++++..+.+.++++.++||++|||+.+.+.++.+.+.... ...+.+..+....+++..+++++.
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666777788899999999999999999999988764322 223456778888899999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~ 480 (556)
.+++.+.+...+..+++++.+++++++..++.....+++.+.+++++.. .+.+|+..+.|++.||+.||++|+++++.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999888888888999999999999999999888888898888775443 35679999999999999999999987554
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+.....++ .+.|+|.|||+|||++.++++|+|||+++.... ..+|+|+||++||+
T Consensus 374 I~i~~~~~~~-------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~ 431 (466)
T PRK10549 374 LHISAEQRDK-------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLN 431 (466)
T ss_pred EEEEEEEcCC-------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHH
Confidence 3333333333 399999999999999999999999998865532 33589999999974
No 28
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.91 E-value=1.1e-22 Score=212.52 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDV 399 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 399 (556)
+++.+....+....+++.+..+...++...++||+||||+.+.+.++.+.... ..+...+.++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666677777777888999999999999999999998876543 33455677888888899999999999
Q ss_pred HHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe
Q 008720 400 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY 479 (556)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~ 479 (556)
+.+++.+........+++++.++++++.+.+......+++.+.++ .+ ..+.+|+..+.+++.|++.||+||+++++
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999888778888899999999999999988877788776654 32 34678999999999999999999997754
Q ss_pred -EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 480 -VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 480 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+..... ++ .+.|+|.|||+|||++..+++|+|||+++...+ ..+|+|+||++||+
T Consensus 374 ~I~i~~~~~-~~-------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~ 432 (457)
T TIGR01386 374 TITVRIERR-SD-------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRS 432 (457)
T ss_pred eEEEEEEec-CC-------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHH
Confidence 44444332 22 389999999999999999999999998876532 34599999999974
No 29
>PRK10337 sensor protein QseC; Provisional
Probab=99.90 E-value=1.5e-22 Score=210.74 Aligned_cols=209 Identities=22% Similarity=0.313 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008720 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE-QRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~-~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
++.+....+.....++++..+...+|++.++||++||++.+.+.++.+.....+++ ...++..+...++++..++++++
T Consensus 215 Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll 294 (449)
T PRK10337 215 EVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLL 294 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666789999999999999999998887765544443 45678889999999999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~ 480 (556)
.+++.+........+++++.+++++++..+......+++.+.++.++.. ..+.+|+..+.+++.|++.||+||+++++.
T Consensus 295 ~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~ 373 (449)
T PRK10337 295 TLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGSV 373 (449)
T ss_pred HHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 9999876665567779999999999999998888889999988875443 345789999999999999999999987654
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.+.... ..++|+|||+|||++..+++|+|||+.+.. ..+|+|+||++||+
T Consensus 374 i~i~~~~-----------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~iv~~ 424 (449)
T PRK10337 374 VDVTLNA-----------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSIVRR 424 (449)
T ss_pred EEEEEEe-----------------------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHHHHH
Confidence 3322211 368999999999999999999999976432 34599999999974
No 30
>PRK09835 sensor kinase CusS; Provisional
Probab=99.90 E-value=3.9e-22 Score=209.86 Aligned_cols=212 Identities=20% Similarity=0.371 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
++.+....+....+++++..+.+.+|++.++||++||++.+.+.++.+..... ..+..+.+..+.....++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555666666666778889999999999999999998887765433 34455667777788899999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe-
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~- 479 (556)
++++.+.....+...++++.++++++...+.....++++.+.++. + +..+.+|+..+.+++.|++.||+||+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999988777777788999999999999999988877887777642 2 334778999999999999999999998765
Q ss_pred EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+.+..... ++ .+.|+|+|||+|||++.++++|+|||+.+.... ..+|+|+||++||+
T Consensus 397 I~i~~~~~-~~-------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~ 454 (482)
T PRK09835 397 ITVRCQEV-DH-------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKS 454 (482)
T ss_pred EEEEEEEe-CC-------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHH
Confidence 44444333 22 389999999999999999999999998765432 33599999999974
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.90 E-value=3e-22 Score=199.98 Aligned_cols=192 Identities=29% Similarity=0.436 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ 421 (556)
+.+|.+.++|+++|||+.|.++++.+... ..++...++++.+....+++..+++++.++.+.+.+.......++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 44688999999999999999999988754 3455667789999999999999999999999988777778888999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCC
Q 008720 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
+++.+...+......+++.+.+..+ . +..+.+|+..+.+++.||+.||++|+++++.+.+.....++
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~----------- 260 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG----------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC-----------
Confidence 9999999999998888899888763 2 34577899999999999999999999765443333333332
Q ss_pred CCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.+.|.|||+|||++..+++|+|||+.+...+ ..+|+|+||++||+
T Consensus 261 --------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~ 308 (333)
T TIGR02966 261 --------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKH 308 (333)
T ss_pred --------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHH
Confidence 389999999999999999999999997655432 34689999999874
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.89 E-value=6.8e-22 Score=207.63 Aligned_cols=207 Identities=27% Similarity=0.401 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008720 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (556)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~ 405 (556)
....++....++++. +...++.+.++|+++||++.+.+.++.+......++..++++.+....+++..+++++..++++
T Consensus 239 l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 317 (475)
T PRK11100 239 LAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARL 317 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344443333322 2356788999999999999999999998876556677889999999999999999999999998
Q ss_pred hcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEE
Q 008720 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIA 484 (556)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g-~~~i~~ 484 (556)
+.........++++.++++++...+......+++.+.++.+ +..+.+|...+.+++.|++.||+||+.++ .+.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~ 394 (475)
T PRK11100 318 EQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSA 394 (475)
T ss_pred ccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 87766667789999999999999999988889998888754 33466799999999999999999999764 444444
Q ss_pred EeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
... ++ .+.++|+|||+|||++.++++|++|++.+...+..+|+|+||++||+
T Consensus 395 ~~~-~~-------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~ 446 (475)
T PRK11100 395 EVD-GE-------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVRE 446 (475)
T ss_pred EEc-CC-------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHH
Confidence 433 32 38999999999999999999999999876544445699999999974
No 33
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.89 E-value=6.8e-22 Score=198.77 Aligned_cols=191 Identities=24% Similarity=0.330 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+.++|++.++||+||||++|.++++++.+...++..+++++.+.+.++++..++++++.+.+. ......++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~------~~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRP------GTHVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CCCccccHHHH
Confidence 356799999999999999999999998877667778889999999999999999999876552 22346799999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-CCCe-EEEEEEeecCCCCCCCCCCCC
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-KEGY-VSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~-~~g~-~~i~~~~~~~~~~~~~~~~~~ 500 (556)
++.+...+.... .+++.+.++.+++.+. +.+|+..+.+++.||+.||++|+ ++++ +.+........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~---------- 270 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQL---------- 270 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccc----------
Confidence 999888887655 3567777776665554 66799999999999999999997 4433 33322111100
Q ss_pred CCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..........+.+.|.|||+|||++..+++|+|||+++. .|+|+||++||+
T Consensus 271 ~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-----~g~GlGL~i~~~ 321 (348)
T PRK11073 271 TLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARN 321 (348)
T ss_pred ccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-----CCccCCHHHHHH
Confidence 000001112368999999999999999999999998753 489999999974
No 34
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.89 E-value=1.7e-21 Score=203.74 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+....+....+++++....+.+|.+.++||++|||+.+.+..+++....... ..+..+....+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666777777777888999999999999999999888876543322 245668888999999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~ 480 (556)
.+++.+.. ..+..+.+++..+++++++.+.......++.+.++..++ +..+.+|+..+.+++.|+++||+||++ +.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997654 356777899999999999988877777888888764333 335778999999999999999999997 445
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
.+.....++ .+.++|+|||+||+++.++++|+|||+++...+ ..+|+|+||++||+
T Consensus 374 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~ 430 (461)
T PRK09470 374 EVAFSVDKD--------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVEN 430 (461)
T ss_pred EEEEEEECC--------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHH
Confidence 555444333 389999999999999999999999998765433 23589999999874
No 35
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.88 E-value=1.4e-21 Score=202.85 Aligned_cols=201 Identities=20% Similarity=0.343 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~ 400 (556)
+++.+..+.++...+++++..+.+..|+++++||+||||+.+.+.++.+... .....+.+.+..+++..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677777778888999999999999999999888776432 12334567788899999999999
Q ss_pred HHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeE
Q 008720 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (556)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~ 480 (556)
++.+.... ....++++.+++++++.... ..+..+.++++.. +..+.+|+..+.+++.||++||+||+. +.+
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~~-~~i 351 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYGN-GWI 351 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhCC-CeE
Confidence 99886432 34568899999999887654 3455666665544 335778999999999999999999984 555
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.....++ .+.|+|.|||+|||++..+++|+||++.+... ..+|+|+||++||+
T Consensus 352 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-~~~g~GlGL~iv~~ 406 (435)
T PRK09467 352 KVSSGTEGK--------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-GSSGTGLGLAIVKR 406 (435)
T ss_pred EEEEEecCC--------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-CCCCeehhHHHHHH
Confidence 555544322 38999999999999999999999999865443 23699999999974
No 36
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-20 Score=177.70 Aligned_cols=184 Identities=19% Similarity=0.280 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLL---ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
..++-+..++||++.||++++.|+-..+ ++..+.....+++.+..-.+|+..+++.++.|+|-.++..+ ..|+++
T Consensus 450 vVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L 527 (673)
T COG4192 450 VVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRL 527 (673)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccH
Confidence 3456778899999999999999875544 34556778899999999999999999999999997665544 459999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEee--cCCCCCCCCC
Q 008720 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA--KPESLSDWRP 497 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~--~~~~~~~~~~ 497 (556)
...++.+.+.++...+.+.+.+.. +....+|.||...++||+.|++-||++++.-....+.+... ..+
T Consensus 528 ~~~v~~AweLl~~khk~rQ~~Li~---ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e------- 597 (673)
T COG4192 528 NSVVEQAWELLQTKHKRRQIKLIN---PTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQE------- 597 (673)
T ss_pred HHHHHHHHHHHHhhhhhccccccC---CcccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCccc-------
Confidence 999999999999887766665543 33445789999999999999999999987543233333332 222
Q ss_pred CCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeeccc
Q 008720 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
.+++.|.|||+|.|-+..+++|.||.++|.. |.|+||+||.
T Consensus 598 ------------~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v-----gLGlGLSIsq 638 (673)
T COG4192 598 ------------MLRIAIIDNGQGWPHELVDKLLTPFTTSKEV-----GLGLGLSISQ 638 (673)
T ss_pred ------------ceEEEEecCCCCCchhHHHHhcCCccccccc-----ccccchhHHH
Confidence 3999999999999999999999999877643 8999999984
No 37
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.86 E-value=8.7e-18 Score=179.73 Aligned_cols=329 Identities=15% Similarity=0.129 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccc
Q 008720 123 KNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (556)
.++.++.+++...++++.+.+..++..++.+..+....+.++.+.+.+.+.++++.+.+.+.++....-...........
T Consensus 199 ~~l~~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (569)
T PRK10600 199 AVLEQRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSDMT 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCccC
Confidence 33445555666667888888889999999999999999999999999999999999999876654433221111110000
Q ss_pred cccccccCChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc
Q 008720 203 IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (556)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (556)
.....+..... ......+....+.+| +..+...+|++....
T Consensus 279 ------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--------------l~~~~~~~G~~~~~~ 319 (569)
T PRK10600 279 ------CDDKGCQLCPR-------------------GVLPVGDRGTTLKWR--------------LSDKHGQYGILLATL 319 (569)
T ss_pred ------ccccccccccc-------------------cCCCcCCCCceEEEE--------------eecCCcceEEEEEEc
Confidence 00000000000 000000112233455 556666788877766
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 008720 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (556)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I 362 (556)
..+..+++.+..+++.++.+++.++...+... +.+++ ...+.+..+++.++|.+.++|..+
T Consensus 320 ~~~~~l~~~~~~ll~~l~~~l~~~l~~~~~~~-----------~~~~~--------~~~~er~~iarelhd~i~~~L~~l 380 (569)
T PRK10600 320 PQGRHLSHDQQQLVDTLVEQLTATLALERQQE-----------RQQQL--------IVMEERATIARELHDSIAQSLSCM 380 (569)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--------HHHHHHHHHHHHhccHHHHHHHHH
Confidence 66678999999999999999998774432111 00000 111224457777888888888888
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCce
Q 008720 363 IALSSLLLE--TDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (556)
Q Consensus 363 ~~~~~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (556)
...+..+.. ...++..++.++.+....+++...+++++...+. .....++.+.++++++.+.... ++.
T Consensus 381 ~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~ 450 (569)
T PRK10600 381 KMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFP 450 (569)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCe
Confidence 776665543 2345677788999999999988888888876552 3346788899999988887653 344
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCC
Q 008720 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (556)
Q Consensus 441 i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~ 520 (556)
+.++.+.........+...+.+++.|+++||+||++.+.+.+.....++ .+.++|.|||+
T Consensus 451 i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~--------------------~~~l~V~D~G~ 510 (569)
T PRK10600 451 VKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQN--------------------QVKLSVQDNGC 510 (569)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC--------------------EEEEEEEECCC
Confidence 5554433222222223456899999999999999988776666544322 38999999999
Q ss_pred CCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 521 Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|||++.. .|+|+||++||+
T Consensus 511 Gi~~~~~-----------------~~~glGL~i~~~ 529 (569)
T PRK10600 511 GVPENAE-----------------RSNHYGLIIMRD 529 (569)
T ss_pred CCCcccc-----------------CCCCccHHHHHH
Confidence 9998631 256899999873
No 38
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.85 E-value=5.5e-20 Score=199.19 Aligned_cols=185 Identities=25% Similarity=0.427 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+..++++.++||++|||+.|.++++.+.....+.+..+.++.+.+..+++..++++++.+++... ....++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE----SQWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc----CccceecHHHH
Confidence 35679999999999999999999999887766777889999999999999999999999987543 34568999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCC
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
++++...+......+++.+.++.+++.+. +.+|+..+.+++.|++.||++|...+ .+.+......+.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 99999999887667888888887766554 56699999999999999999998754 344443333222
Q ss_pred CCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++..+++|+||++++. .|+|+||++||+
T Consensus 533 --------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-----~g~glGL~~~~~ 574 (607)
T PRK11360 533 --------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA-----KGTGLGLALSQR 574 (607)
T ss_pred --------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC-----CCCchhHHHHHH
Confidence 289999999999999999999999997653 489999999874
No 39
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.84 E-value=3.5e-19 Score=177.30 Aligned_cols=188 Identities=36% Similarity=0.591 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC-ccccccceeHHH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS-LELDNGPFNLQI 421 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~-~~l~~~~~~l~~ 421 (556)
.+..++..++|+++||++.+.+..+.+... ........+..+....+++..++++++.+++.+... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855544 222256778888889999999999999999987652 334466788999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCC
Q 008720 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (556)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 501 (556)
+++++...+.......++.+....+ .+..+.+|+..+.+++.||+.||+||++.+.+.+.....++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999888777777775543 23356778999999999999999999984444444443332
Q ss_pred CCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 502 ~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|.|||+||+++.++++|+||++++... +|+|+||++||+
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~---~g~GlGL~i~~~ 302 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKSR---SGTGLGLAIVKR 302 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCC---CCCCccHHHHHH
Confidence 39999999999999999999999999988764 289999999984
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.83 E-value=1.8e-18 Score=180.18 Aligned_cols=224 Identities=16% Similarity=0.198 Sum_probs=149.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 008720 287 KWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREA-EKAIHARNDFRAVMNHEMRTLMHAIIAL 365 (556)
Q Consensus 287 ~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~l~~~i~Hel~~pL~~I~~~ 365 (556)
.|......++..++.++...+.-.....+.++..++++++..+.+...+++ +..++.+.++++.++||++|||++|.+.
T Consensus 244 ~~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~ 323 (495)
T PRK11644 244 TWHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQ 323 (495)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 344445556666666654444333333333333333333222222222222 2223456789999999999999999999
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEE
Q 008720 366 SSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLI 444 (556)
Q Consensus 366 ~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~ 444 (556)
++.+.+.. .+++.++..+.+.+.+.++.+.++++++..+ +...+.+++.+.++++.+.+.... .++.++++
T Consensus 324 a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~ 395 (495)
T PRK11644 324 AGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELED--RGIVSHLD 395 (495)
T ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHhh--cCceEEEE
Confidence 98886543 3445667788888888899999988876544 333457899999999998886543 44555555
Q ss_pred eCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCC
Q 008720 445 MAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (556)
Q Consensus 445 ~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~ 524 (556)
.+.+.......++..+.++++|+++||+||++++.+.+.....++ .+.++|+|||+|||+
T Consensus 396 ~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------------------~i~l~V~DnG~Gi~~ 455 (495)
T PRK11644 396 WRIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------------------RLMLVIEDDGSGLPP 455 (495)
T ss_pred ecCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--------------------EEEEEEEECCCCCCc
Confidence 443333344557788999999999999999988876665544332 399999999999997
Q ss_pred CChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 525 QDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 525 e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+. .|+|+||++||+
T Consensus 456 ~~------------------~~~GLGL~ivr~ 469 (495)
T PRK11644 456 GS------------------GQQGFGLRGMRE 469 (495)
T ss_pred CC------------------CCCCCcHHHHHH
Confidence 52 256999999874
No 41
>PRK13557 histidine kinase; Provisional
Probab=99.82 E-value=7.8e-19 Score=187.56 Aligned_cols=199 Identities=18% Similarity=0.270 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccce
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
...+++..++|+++|||+.|.++++++... .......+.++.+.+.++++..++++++.+++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 356788999999999999999999987643 2334567788999999999999999999988743 4455678
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEE-EEeecCCCCCCCC
Q 008720 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII-ASVAKPESLSDWR 496 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~-~~~~~~~~~~~~~ 496 (556)
++..+++.+...+.... .+++.+.+..++..+. +.+|+..+.+++.||+.||+||++.++.+.+ ........
T Consensus 238 ~l~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~----- 310 (540)
T PRK13557 238 NLNGLVSGMGELAERTL-GDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIED----- 310 (540)
T ss_pred CHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCc-----
Confidence 99999998887766433 4667777766555543 5669999999999999999999976554332 22211110
Q ss_pred CCCC-CCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 497 PPEF-YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~-~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.. .........++.|+|.|||+|||++..+++|+|||+++.. .+|+|+||++||+
T Consensus 311 -~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~---~~g~GlGL~i~~~ 367 (540)
T PRK13557 311 -EDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE---GKGTGLGLSMVYG 367 (540)
T ss_pred -cccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---CCCCCccHHHHHH
Confidence 000 0000012235899999999999999999999999987653 2599999999974
No 42
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.81 E-value=6e-16 Score=151.54 Aligned_cols=351 Identities=13% Similarity=0.131 Sum_probs=230.5
Q ss_pred hhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------cccccH--HHHHHHHHHHH
Q 008720 66 GLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDL--------------LSVKTR--ELFLKNRADEL 129 (556)
Q Consensus 66 g~~hll~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~l~~~ip~~--------------l~~~~~--~~~~~~~~~~l 129 (556)
.++.++.++++|+. -. -+++|+-.+++....+.---|=... ++-.+. ..+.+.++++.
T Consensus 158 ~~~~~~~~~~i~~l---r~---~vv~Pl~~L~~~a~ri~~r~F~~~~~~t~~~Elg~L~~~FNqMs~EL~~lY~~LE~rV 231 (574)
T COG3850 158 LLILLLVVFTIYWL---RR---RVVRPLNQLTSAAQRIGRRQFDQRPTDTGRNELGLLGRAFNQMSGELKKLYADLEQRV 231 (574)
T ss_pred HHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555532 12 3556666667766666432222111 111111 12336788888
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccccccccccc
Q 008720 130 DREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI 209 (556)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (556)
.++++.++++++.+..+++.++.+.++...++.++.+.+.+....++.++.+.+.++++......+.-......+
T Consensus 232 ~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~di~~~----- 306 (574)
T COG3850 232 EEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQWDISEG----- 306 (574)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCcceecC-----
Confidence 999999999999999999999999999999999999999999999999999999887665443333211110000
Q ss_pred CChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccc
Q 008720 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR 289 (556)
Q Consensus 210 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~ 289 (556)
+...+..-....| +...+...|.+.. .+...
T Consensus 307 -------------------------------d~~~~~~~~~~~~--------------l~~~g~~Lg~l~~----~~~l~ 337 (574)
T COG3850 307 -------------------------------DQPSGLKWPQEDP--------------LTQQGHLLGTLPW----QRSLP 337 (574)
T ss_pred -------------------------------CCCcccchhhhcc--------------hhhhhhhheeeec----cCCCC
Confidence 0000000001112 2333334444443 34678
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 008720 290 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLL 369 (556)
Q Consensus 290 ~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l 369 (556)
+.+..++..++.+++.++...... ++..+| ...+++.-+++++++-+-+.|+.+.-.+++|
T Consensus 338 ~~d~~Ll~tl~~~L~rtL~~~~~q-----------~~~qQL--------llmEERatIAReLHDSiAQsLS~LkiQvt~L 398 (574)
T COG3850 338 EDDQQLLDTLVQQLGRTLALNKQQ-----------EQQQQL--------LLMEERATIARELHDSIAQSLSFLKIQVTLL 398 (574)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988433211 111111 1223356677888888888888888888887
Q ss_pred hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeC
Q 008720 370 LET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMA 446 (556)
Q Consensus 370 ~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~ 446 (556)
... ...++.++.+..++........-+.+++.-.| +..+.-++...++++++.+.. +.++.++++..
T Consensus 399 ~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~~---qtg~~~~l~~q 468 (574)
T COG3850 399 KTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFSN---QTGITVTLDYQ 468 (574)
T ss_pred HhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCchHHHHHHHHHHHHh---ccCCeEEEecc
Confidence 753 44556777888888887777777777776544 444467888888998888876 45777776653
Q ss_pred CCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCC
Q 008720 447 PELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 447 ~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
-.......--..++-||+.+.++||+||+....+.+.+....++ +.++|+|||+|||+.
T Consensus 469 lp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 469 LPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTVEDNGVGIDEA 527 (574)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEEeeCCcCCCCc
Confidence 22111111123457899999999999999998888888776643 999999999999986
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.78 E-value=5e-18 Score=190.37 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 008720 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (556)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~ 410 (556)
+++++++++++++++.|+++|+||+||||+.|.++++++.....++....++.........+....+.+. +
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~------ 662 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLY---Q------ 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh---c------
Confidence 3444556666777899999999999999999999999988776677666666655555555544444432 2
Q ss_pred cccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEe
Q 008720 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASV 486 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~----g~~~i~~~~ 486 (556)
.....++++.++++++...+..........+.+.++.+.......+...+.+|+.||++||+||+.+ |.+.+....
T Consensus 663 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 663 SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2244578999999999999988776666666666655444334445667889999999999999743 344444433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
..++ ++.|+|+|||+|||++... ..|+||||+|||+
T Consensus 743 ~~~~-------------------~v~i~V~D~G~GI~~~~~~---------------~~~~gLGLai~~~ 778 (807)
T PRK13560 743 QGDG-------------------MVNLCVADDGIGLPAGFDF---------------RAAETLGLQLVCA 778 (807)
T ss_pred cCCC-------------------EEEEEEEeCCCcCCccccc---------------cccCCccHHHHHH
Confidence 2122 4999999999999997421 1367899999984
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.77 E-value=3.4e-15 Score=147.79 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=109.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
-++..+||..|-|++|.|++++-.. .+..+.+.+.++.-.+.++.+..-.+ .--+..++
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~y-------d~a~~~I~~~~~~qq~~~~~l~~~i~-----------~~~lAg~L--- 394 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGEY-------DDALDYIQQESEEQQELIDSLSEKIK-----------DPVLAGFL--- 394 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHhhhhhhHHHHHHhcc-----------cHHHHHHH---
Confidence 4456799999999999999887432 23333444444334444444432111 11223332
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCce-EEccHHHHHHHHHHHHHHHhhcCC--CCeEEEEEEeecCCCCCCCCCCCCCCC
Q 008720 427 IKLIKPVASCKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAKPESLSDWRPPEFYPV 503 (556)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~~~-~~~d~~~l~~vl~nLl~NAik~~~--~g~~~i~~~~~~~~~~~~~~~~~~~~~ 503 (556)
---...+++.++.+.++....++.. ..-+...+--++-||++||+++.. +++..+.+...+.++
T Consensus 395 -lgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~------------ 461 (537)
T COG3290 395 -LGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD------------ 461 (537)
T ss_pred -HhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC------------
Confidence 2222344568888888765544431 123778888999999999999874 233333333333222
Q ss_pred CCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 504 STDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 504 ~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||||||++..+++|+..|++|.. .|.|+|||+||+
T Consensus 462 ------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq 504 (537)
T COG3290 462 ------ELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQ 504 (537)
T ss_pred ------EEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHH
Confidence 4999999999999999999999999999873 488999999984
No 45
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.73 E-value=3.8e-19 Score=192.54 Aligned_cols=554 Identities=38% Similarity=0.467 Sum_probs=409.2
Q ss_pred CCcccCCC--CCCChhhhHHHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhhhhHHHHHHh-cc
Q 008720 2 ESCDCIDT--QWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP-YRWVLMQFGSFIILCGLTHFISLWT-FT 77 (556)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~fi~~~g~~hll~i~~-~~ 77 (556)
+.|+|.+. .|+.......-++.+|.+++.|||++|..++||..+...++ +.|....|..|...|+++|.+..|+ ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 57999976 77766556677889999999999999999999999988775 8999999999999999999999998 44
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHH---HHHHHHHHHHhhhHHHHhHHHHHHHHHHH
Q 008720 78 VHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNR---ADELDREMGLILTQEETGRHVRMLTHEIR 154 (556)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 154 (556)
++...++......+..++.+++.++...+..+|..+..+.++...++. ++++.++......+..........+..+.
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 444455556667788889999999999999999999999999999888 88999999888888888888888888999
Q ss_pred ccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc----cccccccccCChhHHHHhcccCceEccCCC
Q 008720 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ----IQIGSSVPINLPIVTDVFNSAQAMRLPYNC 230 (556)
Q Consensus 155 ~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~ 230 (556)
...+.+.+++.......+.+..+-+..|.+.+..-.....|.+..+ .......+..++....+++...........
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999999988766444455555443 222223344455555555555444433333
Q ss_pred chhhhh-hcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH-
Q 008720 231 PLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS- 308 (556)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~- 308 (556)
....+- ..............++++.+...+.+..++......+...++......++.|..++..+-..++++++.++.
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 222211 112234455666778888777777677788888889999999888888999999999999999999999987
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 008720 309 -HAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQRVMIETVL 386 (556)
Q Consensus 309 -~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~-~~~~~~~~~~l~~i~ 386 (556)
++.-.......++++.+.+..+...+++...+..+...+.....|..++|.+.+.+....+.. ....++..-.++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 555555555666677777777777777777767777777777789999999999888775443 233333334455566
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHH
Q 008720 387 KSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILN 466 (556)
Q Consensus 387 ~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~n 466 (556)
+.......+++.-.+..+...+..........+..++.............+...+.+.+..+.+..+.+|..+..+++.+
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILD 509 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhh
Confidence 66667777887777777766565555666788999999999999888777788888888777777777788888999999
Q ss_pred HHHHHhh--cCCCCeE-EEEEEeecCCCCCC----CCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCC
Q 008720 467 IVGNAVK--FTKEGYV-SIIASVAKPESLSD----WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 467 Ll~NAik--~~~~g~~-~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
...++.+ ++..++. +..+.........+ ...+-+........-++.+.+.+++.|.........+..+.+...
T Consensus 510 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 589 (786)
T KOG0519|consen 510 FNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD 589 (786)
T ss_pred hcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhcccc
Confidence 9999988 6665543 33333221111110 011112222222223588999999999999888888777766555
Q ss_pred CCCCC-CCCceeeeccc
Q 008720 540 SSCQT-PRAGLGLAICR 555 (556)
Q Consensus 540 ~~~~~-~G~GlGL~i~k 555 (556)
...+. .+.+++++.|+
T Consensus 590 ~~~~~~~~~~~~~~~~~ 606 (786)
T KOG0519|consen 590 LTSKLSSGSGLSLALCP 606 (786)
T ss_pred chhhcccccccccccch
Confidence 44332 35566666654
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.72 E-value=1e-15 Score=163.60 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=101.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHH
Q 008720 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETV-LKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (556)
Q Consensus 346 ~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i-~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~ 424 (556)
++++.++||++|||++|.+++++... ++..+++..+ .....++..+++.+.+ ++ +..++
T Consensus 341 ~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~- 400 (542)
T PRK11086 341 DALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS--------------PV-IAGFL- 400 (542)
T ss_pred HHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC--------------HH-HHHHH-
Confidence 45566799999999999998876432 2222332222 2222222222222210 11 11111
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCCceE-EccHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEeecCCCCCCCCCCCC
Q 008720 425 EVIKLIKPVASCKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTKE---GYVSIIASVAKPESLSDWRPPEF 500 (556)
Q Consensus 425 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~d~~~l~~vl~nLl~NAik~~~~---g~~~i~~~~~~~~~~~~~~~~~~ 500 (556)
......+..+++.+.++.++..+... ..+...+.+++.||++||+||+.+ +.+.+..... ++
T Consensus 401 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~-~~---------- 466 (542)
T PRK11086 401 ---LGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR-NG---------- 466 (542)
T ss_pred ---HHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-CC----------
Confidence 11222344577777776654444321 123457999999999999999742 3344443332 22
Q ss_pred CCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 501 ~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.++++|+|||+++. +|+|+||++||+
T Consensus 467 ---------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-----~g~GlGL~iv~~ 508 (542)
T PRK11086 467 ---------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-----SNRGVGLYLVKQ 508 (542)
T ss_pred ---------EEEEEEEECCCCCCHHHHHHHHhCCCccCC-----CCCcCcHHHHHH
Confidence 489999999999999999999999997763 489999999974
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.69 E-value=8.6e-16 Score=164.12 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=111.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
.++.++||++|||++|.++++.- ...+.++.+...+..+..+++.+...... -.+..+ +
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~-----------~~~~~~---l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD-----------RQVAGL---L 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc-----------HHHHHH---H
Confidence 44557999999999999987652 22345666777777788887777654320 011111 1
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCC-ceEEccHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEeecCCCCCCCCCCCCCC
Q 008720 427 IKLIKPVASCKKLSMTLIMAPELP-TYAVGDEKRLMQTILNIVGNAVKFT---KEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NAik~~---~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
... ...+.+.++.+.+..+.... .....|+..+.+++.||++||++|. +++...+.+.....+.
T Consensus 400 ~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~----------- 467 (545)
T PRK15053 400 FGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD----------- 467 (545)
T ss_pred HHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC-----------
Confidence 111 22233567777665433211 1134589999999999999999995 3332223332222221
Q ss_pred CCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+|||++..+++|+|||+++... .+|+|+||++||+
T Consensus 468 -------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ivk~ 512 (545)
T PRK15053 468 -------DVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYLIAS 512 (545)
T ss_pred -------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHHHHH
Confidence 48999999999999999999999999876542 3479999999974
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.63 E-value=6.3e-12 Score=135.07 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=104.0
Q ss_pred HHHhhhcHHHHHHHHHH----HHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHH
Q 008720 351 MNHEMRTLMHAIIALSS----LLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~----~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~ 424 (556)
++|++++|++.+..++. ++... ...+...+.+..+.+...++...+.+++... .....++++.+.++
T Consensus 367 la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~~l~~~l~ 439 (565)
T PRK10935 367 IARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTF-------RLTIQEANLGSALE 439 (565)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCCCCCCHHHHHH
Confidence 56666666665554443 33322 2234455666666666666666666665433 33455889999999
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCC
Q 008720 425 EVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVS 504 (556)
Q Consensus 425 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~ 504 (556)
+++..+... .+..+.++.+.+.......+...+.|++.|++.||+||++.+.+.+......+.
T Consensus 440 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~-------------- 502 (565)
T PRK10935 440 EMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG-------------- 502 (565)
T ss_pred HHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--------------
Confidence 999988764 334444443322222223344568999999999999999887766665544232
Q ss_pred CCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 505 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 505 ~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|.|||+|||++. ..|+|+||++|++
T Consensus 503 -----~~~i~V~D~G~Gi~~~~-----------------~~~~glGL~i~~~ 532 (565)
T PRK10935 503 -----EHTVSIRDDGIGIGELK-----------------EPEGHYGLNIMQE 532 (565)
T ss_pred -----EEEEEEEECCcCcCCCC-----------------CCCCCcCHHHHHH
Confidence 38999999999999742 1367999999873
No 49
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.56 E-value=3.7e-12 Score=118.57 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=145.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 008720 290 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQN-VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 368 (556)
Q Consensus 290 ~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~ 368 (556)
.+..+++..++.|.-..+.--..+.+.++.++.+.+.- +.-..+++-....++.+++.++.+++|+.+.+++|...+..
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 56667777777664333322222223333333332211 11112233333344567899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCC
Q 008720 369 LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPE 448 (556)
Q Consensus 369 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~ 448 (556)
.++-..++..++....|++-+.++.+-+.+++.-.| +...+...+.+.++++++.++- .++++.++++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~~--~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREMEL--EERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhhh--hhcCeEEEeccccC
Confidence 988778888888888888888888888888776444 4445577888888888888764 46888888876544
Q ss_pred CCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCC
Q 008720 449 LPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 449 ~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
....-..-...++++.+++++|-+||++...+++.....++ .+.++|+|||.|+|+.
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------------------~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------------------RLMLEIEDDGSGLPPG 456 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc--------------------EEEEEEecCCcCCCCC
Confidence 32222223456999999999999999999988888766554 3899999999999986
No 50
>PRK13559 hypothetical protein; Provisional
Probab=99.54 E-value=6.2e-14 Score=141.66 Aligned_cols=158 Identities=13% Similarity=0.200 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll 423 (556)
+.+|++.++|+++|||+.|.++++++... .+..++++.+.+.+.++..+++++++.. ...++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~---------~~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDER---------GWETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccC---------CcCcccHHHHH
Confidence 34688899999999999999999887632 2234567778888888888888776543 24579999999
Q ss_pred HHHHHHHHHhhhcCCceEEEEeCCCCCceEEc-cHHHHHHHHHHHHHHHhhcC---C-CCeEEEEEEeecCCCCCCCCCC
Q 008720 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVG-DEKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPP 498 (556)
Q Consensus 424 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-d~~~l~~vl~nLl~NAik~~---~-~g~~~i~~~~~~~~~~~~~~~~ 498 (556)
+.+.+.+... +..+.++.+ .. .+.. +...|.+|+.||+.||+||+ + .|.+.+.......+.
T Consensus 238 ~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~------- 303 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGA------- 303 (361)
T ss_pred HHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCC-------
Confidence 9998877532 445555421 21 1211 23468999999999999994 3 355555442122111
Q ss_pred CCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.+.+.|||.|++++. .|+|+||.+|++
T Consensus 304 -----------~~~i~v~d~G~~~~~~~------------------~~~g~Gl~i~~~ 332 (361)
T PRK13559 304 -----------GFRIDWQEQGGPTPPKL------------------AKRGFGTVIIGA 332 (361)
T ss_pred -----------eEEEEEECCCCCCCCCC------------------CCCCcHHHHHHH
Confidence 48999999999987642 367899998873
No 51
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.44 E-value=3.6e-14 Score=116.95 Aligned_cols=82 Identities=33% Similarity=0.599 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhcc
Q 008720 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+|+..+.+++.||+.||++|+++ +.+.+.+...++ ++.|+|+|+|+|||++.++++|+|
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 58999999999999999999987 555555554443 399999999999999999999999
Q ss_pred CcccCCCCCCCCCCceeeecccC
Q 008720 534 FAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|++.+......+|+|+||++||+
T Consensus 61 ~~~~~~~~~~~~g~GlGL~~~~~ 83 (111)
T PF02518_consen 61 FFTSDKSETSISGHGLGLYIVKQ 83 (111)
T ss_dssp TSHSSSSSGGSSSSSHHHHHHHH
T ss_pred cccccccccccCCCChHHHHHHH
Confidence 99887644445689999999873
No 52
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.36 E-value=1.1e-08 Score=94.61 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccc---e
Q 008720 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGP---F 417 (556)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~---~ 417 (556)
+.++.++++.+++.+.+.|-+....+++......++..- .-..+.+.++.++.-|+++..+++ .+++.. .
T Consensus 248 edEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDL 320 (459)
T COG4564 248 EDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISH------DLRPRALDDL 320 (459)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhhh
Confidence 345678888999999999988888888887653322110 113477777889999998888776 444443 3
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCC
Q 008720 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
.|...++..++.++ .+.++.++++.+.....+.......+++|+++.++|-=+|++..++.+......+.
T Consensus 321 GL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~------- 390 (459)
T COG4564 321 GLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGDM------- 390 (459)
T ss_pred hHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcc-------
Confidence 44555555555555 46788888877654444445567889999999999999999877777666554443
Q ss_pred CCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+.+.|+|||+|++.+.
T Consensus 391 -------------vql~vrDnG~GF~~~~ 406 (459)
T COG4564 391 -------------VQLMVRDNGVGFSVKE 406 (459)
T ss_pred -------------eEEEEecCCCCccchh
Confidence 9999999999998654
No 53
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.33 E-value=3e-10 Score=114.59 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH
Q 008720 342 HARNDFRAVMNHEMRTLMHAIIALSSLLL--ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
+++.++++.+|+.+..-|.++........ .+...++.++.++.+.+.+ .+-+++++.... .+++...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~~---~e~l~evR~~v~------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKLL---REALQEVRALVR------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH------hcCCchhhc
Confidence 66889999999999999999986222221 2233344555555555543 334444444333 333333333
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCC
Q 008720 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
..+...+...........++.+..+.....+.+...-...+.+++++.++||+||+++..+.+.....++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33444444444444445566666554432222333467789999999999999999999888888777664
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++++|.|||+|++++..
T Consensus 311 -----------l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDKE 327 (365)
T ss_pred -----------EEEEEEECCcCCCcccc
Confidence 99999999999998753
No 54
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.32 E-value=2.7e-10 Score=123.91 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=139.2
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEE--EEeecccc--cccc
Q 008720 130 DREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQI--QIGS 205 (556)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~--~~~~ 205 (556)
++..+.+.++....+.+.++++.+.++.+++++++.+.+.+.+.++++.|+|+++|++...+.. +++.+... ..+.
T Consensus 171 ~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~ 250 (686)
T PRK15429 171 NVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQS 250 (686)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccc
Confidence 3334445555556888999999999999999999999999999999999999999987776654 33332221 2234
Q ss_pred ccccCChhHHHHhcccCceEccCCCchhhhhhc---ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc
Q 008720 206 SVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (556)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (556)
..+...+.++.++.++++..+++...+...... .........+.+.+| |..++.++|++.+.+
T Consensus 251 ~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~v~GvL~l~~ 316 (686)
T PRK15429 251 EVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLP--------------LMSGDTMLGVLKLAQ 316 (686)
T ss_pred cCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEe--------------EEECCEEEEEEEEee
Confidence 455566889999999999999766544322110 011112346677788 667778999999987
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNV 328 (556)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~ 328 (556)
.+...|++.|++++..+|++++++++++..+++.++..+.+++.+.
T Consensus 317 ~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~ 362 (686)
T PRK15429 317 CEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 362 (686)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHH
Confidence 7788999999999999999999999999999988777666655443
No 55
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.26 E-value=5.2e-11 Score=125.83 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=84.2
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcCC------------C-CeE
Q 008720 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFTK------------E-GYV 480 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~v---l~nLl~NAik~~~------------~-g~~ 480 (556)
+.+..++...-..++..+...+..+++.+.+.. +..|+..+.++ +.||+.||++|+. + |.+
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 456667777777776666655666666665543 34599999988 5699999999962 2 334
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh---------------------hhhhccCcccCC
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI---------------------PLLFTKFAQSRG 539 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~---------------------~~iF~~f~~~~~ 539 (556)
.+..... ++ .+.|+|+|||.||+++.+ +.||+|+|+++.
T Consensus 420 ~l~a~~~-~~-------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQ-GG-------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEc-CC-------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 4433332 22 399999999999998654 359999998876
Q ss_pred CCCCCCCCceeeecccC
Q 008720 540 SSCQTPRAGLGLAICRR 556 (556)
Q Consensus 540 ~~~~~~G~GlGL~i~k~ 556 (556)
..+..+|+|+||++||+
T Consensus 480 ~~~~~sGrGvGL~iVk~ 496 (670)
T PRK10547 480 QVTDVSGRGVGMDVVKR 496 (670)
T ss_pred ccccCCCCchhHHHHHH
Confidence 55555799999999974
No 56
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.20 E-value=2.3e-09 Score=115.93 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecc--ccccccccccCChhHHHHhccc
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDVFNSA 221 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~ 221 (556)
..+.++++.+.+..+++++++.+++.+.+.+++++|.||+.|+++..+.+....+. .......++...+.++.+..++
T Consensus 3 ~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg 82 (748)
T PRK11061 3 TRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLA 82 (748)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccC
Confidence 46889999999999999999999999999999999999999988877665554442 2223335677888999999999
Q ss_pred CceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHH
Q 008720 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (556)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~ 301 (556)
+++.+++...+.++.........+.++.+++|| ..++.++|++.+.++.++.|++++..++..+|.
T Consensus 83 ~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL--------------~~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA~ 148 (748)
T PRK11061 83 EPINLADAQKHPSFKYIPSVKEERFRAFLGVPI--------------IYRRQLLGVLVVQQRELRQFDESEESFLVTLAT 148 (748)
T ss_pred ceEEECCcccCcccccCccccCccceEEEEEEE--------------eeCCEEEEEEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 999999999888775433223456778899994 456678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008720 302 QVAVALSHAAILEDS 316 (556)
Q Consensus 302 ~~~~al~~a~~~~~~ 316 (556)
++++++.+++..+..
T Consensus 149 ~aAiAL~na~l~~~~ 163 (748)
T PRK11061 149 QLAAILSQSQLTALF 163 (748)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887666
No 57
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.19 E-value=1.7e-09 Score=111.90 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccce
Q 008720 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (556)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~ 417 (556)
.+++|++.+ +|++.|.|++|.+++..-. .+.+.+++.++.++.|..- ....+..
T Consensus 258 l~~lqsqi~-----pHfL~NtL~~I~~~~~~~~------------------~~~~~~~v~~l~~llR~~l---~~~~~~~ 311 (456)
T COG2972 258 LRALQSQIN-----PHFLYNTLETIRMLAEEDD------------------PEEAAKVVKALSKLLRYSL---SNLDNIV 311 (456)
T ss_pred HHHHHhhcc-----hHHHHhHHHHHHHHHHhcC------------------HHHHHHHHHHHHHHHHHHh---hCCCCee
Confidence 334445555 9999999999998855421 2223334444444444211 1122356
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC----CCC-eEEEEEEeecCCCC
Q 008720 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT----KEG-YVSIIASVAKPESL 492 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~----~~g-~~~i~~~~~~~~~~ 492 (556)
++..-+.-+.+++..+..+-+..+++..+-+.... +-..+..++++|++||++|+ ++| .+.+..... +.
T Consensus 312 ~l~~E~~~~~kyl~iq~~r~~~~le~~~~i~~~~~---~l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~-~~-- 385 (456)
T COG2972 312 TLEIELLLIEKYLEIQKLRIGDRLEVPLPIDEELE---PLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ-DD-- 385 (456)
T ss_pred eHHHHHHHHHHHHHHHHhccCcceEEEeccCcccc---cccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEc-CC--
Confidence 77776777777776665555545554433222111 23446778999999999998 223 333333333 22
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCC-CceeeecccC
Q 008720 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPR-AGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G-~GlGL~i~k~ 556 (556)
++.++|.|||+||+++....+. ++.. + .|+||.++++
T Consensus 386 -----------------~i~i~i~Dng~g~~~~~~~~~~-----~~~~-----~r~giGL~Nv~~ 423 (456)
T COG2972 386 -----------------VIQISISDNGPGIDEEKLEGLS-----TKGE-----NRSGIGLSNVKE 423 (456)
T ss_pred -----------------EEEEEEeeCCCCCChhHHHHHH-----hhcc-----CcccccHHHHHH
Confidence 5999999999999998776653 2221 2 4999998763
No 58
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.17 E-value=4.4e-09 Score=96.68 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll 423 (556)
+..+.+.++|.+||-|+.|.+++.+-.+...++ ..+.+......+..|....+.+.. . ....++...++
T Consensus 19 ~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L~~---------s-~~~~~~~~~~~ 87 (221)
T COG3920 19 KELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYK---------S-GDDTWDFASYL 87 (221)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHhc---------C-CcceEcHHHHH
Confidence 556888899999999999999999888776665 444444444444444444333321 1 34478888998
Q ss_pred HHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEeecCCCCCCCCCCC
Q 008720 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 424 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
+.+...+.+....+.+.+..+.++... +-.....-|.-++.+|++||+||+- .|.+.|.....++..
T Consensus 88 ~~L~~~l~~~~~~~~~~~~~~~~~~~~-l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~-------- 158 (221)
T COG3920 88 ELLASNLFPSYGGKDIRLILDSGPNVF-LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG-------- 158 (221)
T ss_pred HHHHHHHHHhcCCCCceEEEecCCceE-ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC--------
Confidence 888888887643455666555444211 1122344588999999999999983 455666665554431
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCC
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
...+.|.|||.|+|.+
T Consensus 159 ----------~~~l~v~deg~G~~~~ 174 (221)
T COG3920 159 ----------RFLLTVWDEGGGPPVE 174 (221)
T ss_pred ----------eEEEEEEECCCCCCCC
Confidence 2789999999999976
No 59
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.16 E-value=3.2e-10 Score=83.93 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQ-RVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~l~~~~~~~~~ 408 (556)
+++|++.++||+||||++|.++++.+.. ...+++. +++++.+..+++++..+++++++|++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6789999999999999999999999999 7777776 999999999999999999999999998764
No 60
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.06 E-value=8.8e-09 Score=108.94 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=128.8
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEE-EEeeccccccccccccCChhHHHHhcc
Q 008720 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL-SYTLNNQIQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (556)
++..+.++++.+.+..+++++++.+++.+.+.+++++|+|+++|+++..... +++..........++...+.++.++.+
T Consensus 3 ~L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~ 82 (534)
T TIGR01817 3 QLAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVAT 82 (534)
T ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhc
Confidence 3667999999999999999999999999999999999999999887665433 333332222224566678899999999
Q ss_pred cCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC-CCccccchHHHHHHH
Q 008720 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELELIDVV 299 (556)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~-~~~~~~~e~~ll~~~ 299 (556)
++++++++...+..+.........+..+.+++| +..++.++|++.+.+.. ++.|++++.+++..+
T Consensus 83 ~~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VP--------------L~~~g~viGvL~v~s~~~~~~ft~~d~~lL~~l 148 (534)
T TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVP--------------IKADSETIGVLAADRDFRSRERLEEEVRFLEMV 148 (534)
T ss_pred CCeEEecccccCchhhhccccccCCcceEEEEE--------------EcCCCEEEEEEEEEeccccccccHHHHHHHHHH
Confidence 999999998887766432222334568889999 55778899999998875 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008720 300 ADQVAVALSHAAILEDSM 317 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~ 317 (556)
|.+++.++...+.+....
T Consensus 149 A~~ia~aI~~~~~~~~~~ 166 (534)
T TIGR01817 149 ANLIGQTVRLHRLVAQRR 166 (534)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998877766433
No 61
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.02 E-value=4.8e-10 Score=116.58 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=58.5
Q ss_pred cCCceEEEEeCCCCCceE-EccHHHHHHHHHHHHHHHhhcCCCCeE--EEEEEeecCCCCCCCCCCCCCCCCCCCceEEE
Q 008720 436 CKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTKEGYV--SIIASVAKPESLSDWRPPEFYPVSTDGHFYLR 512 (556)
Q Consensus 436 ~~~i~i~~~~~~~~~~~~-~~d~~~l~~vl~nLl~NAik~~~~g~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 512 (556)
.+.+.+...+....+..- ..|...|.+++.|||.||++|+..+++ .+.+.....+. ++.
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~------------------~v~ 83 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGD------------------YYR 83 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCC------------------EEE
Confidence 355666655544433222 235677999999999999999976542 22222222221 489
Q ss_pred EEEEecCCCCCCCChhhhhccCccc
Q 008720 513 VQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 513 i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
|.|+|||+||+++.++++|++|+++
T Consensus 84 I~VeDNG~GIp~EdLp~IFerf~~t 108 (795)
T PRK14868 84 LVVEDNGPGITKEQIPKVFGKLLYG 108 (795)
T ss_pred EEEEEcCCCCCHHHHHHHhhhhccc
Confidence 9999999999999999999999754
No 62
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.98 E-value=9.9e-09 Score=86.74 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhhhh
Q 008720 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 237 (556)
|++++++.+++.+.+.+++++++||++|+++..+...++.+........++...+.+..++.++++...++.....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERD---- 76 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-T----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccccc----
Confidence 5789999999999999999999999999888888877777443333346778888999999999987776543322
Q ss_pred cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHH
Q 008720 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (556)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~ 309 (556)
..+....+.+| +..++..+|++.+....+..|++.+.++++.+|.+++++++|
T Consensus 77 -----~~~~~s~~~vP--------------l~~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 77 -----FLGIRSLLVVP--------------LRSRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTCEEEEEE--------------EEETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CCCCCEEEEEE--------------EeECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 25567778889 556668899999998888899999999999999999999964
No 63
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.94 E-value=8e-10 Score=112.75 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...|.+++.||++||++|++.++ +.+.+...+.+ ..++.|+|+|||+||+++.++++|
T Consensus 33 p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~iF 95 (535)
T PRK04184 33 PARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPKVF 95 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHHHh
Confidence 567899999999999999997643 33333322111 114889999999999999999999
Q ss_pred ccCcccCCCC---CCCCCCceeeeccc
Q 008720 532 TKFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
++|+.+.... ...+|+|+||++|+
T Consensus 96 ~~f~~~SK~~~~~~s~G~~GLGLsiv~ 122 (535)
T PRK04184 96 GKLLYGSKFHNLRQSRGQQGIGISAAV 122 (535)
T ss_pred hhhhccccccccccCCCCCCcchHHHH
Confidence 9986543221 12346899999875
No 64
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=98.89 E-value=3.6e-09 Score=90.63 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.|+++||++|+. ++.+.+.....++ .+.++|.|+|+|||+ .+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~--------------------~~~i~I~D~G~gi~~--~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH--------------------EVYITVRDEGIGIEN--LEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC--------------------EEEEEEEEcCCCcCc--hhHhh
Confidence 566789999999999999863 2334444433322 389999999999983 67899
Q ss_pred ccCcccCCCCCCCCCCceeeecccC
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+||++.+.. ..|+|+||+++++
T Consensus 94 ~~~~~~~~~---~~~~GlGL~lv~~ 115 (137)
T TIGR01925 94 EPLYTSKPE---LERSGMGFTVMEN 115 (137)
T ss_pred CCCcccCCC---CCCCcccHHHHHH
Confidence 999976542 2478999998864
No 65
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.85 E-value=3.9e-09 Score=106.58 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=61.7
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh
Q 008720 454 VGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 454 ~~d~~~l~~vl~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~ 529 (556)
.++...|.+++.||++||++|+..++ +.+.....+.+ ++.|+|+|||+||+++.+++
T Consensus 23 ~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~~ 83 (488)
T TIGR01052 23 SGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIPK 83 (488)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHHh
Confidence 34788999999999999999987532 33333222222 37899999999999999999
Q ss_pred hhccCcccCCCC---CCCCCCceeeeccc
Q 008720 530 LFTKFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 530 iF~~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
+|++|+.+.... ...++.|+||++|+
T Consensus 84 iF~rf~~tsK~~~~~~s~G~~GlGLs~~~ 112 (488)
T TIGR01052 84 VFGKMLAGSKFHRIIQSRGQQGIGISGAV 112 (488)
T ss_pred hhhhccccCccccccccCCCccEehhHHH
Confidence 999987654321 12357999999875
No 66
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.84 E-value=6e-08 Score=103.36 Aligned_cols=118 Identities=18% Similarity=0.287 Sum_probs=83.8
Q ss_pred ceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcC-------------CCCe
Q 008720 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFT-------------KEGY 479 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~v---l~nLl~NAik~~-------------~~g~ 479 (556)
.+.+..++...-..++.....-+-.+++.+.+..- ..|+..+.++ +.+|+.||++|+ +.|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~t---elDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDT---ELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCe---eehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 34555555555555555555445555555555532 2288888888 779999999996 2254
Q ss_pred EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh------------------------hhccCc
Q 008720 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL------------------------LFTKFA 535 (556)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~------------------------iF~~f~ 535 (556)
+++......+ ++.|+|+|+|.||+.+.+.+ ||.|.|
T Consensus 466 I~L~A~~~gn--------------------~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 466 ITLSAYHEGN--------------------NIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEEcCCC--------------------eEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 4444433333 49999999999998765543 999999
Q ss_pred ccCCCCCCCCCCceeeecccC
Q 008720 536 QSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 536 ~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+|....+.-.|.|.||-+||+
T Consensus 526 STa~~VtdvSGRGVGMDVVk~ 546 (716)
T COG0643 526 STAEQVTDVSGRGVGMDVVKT 546 (716)
T ss_pred CcchhhhcccCCccCHHHHHH
Confidence 999998888999999999874
No 67
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.80 E-value=2.6e-08 Score=87.02 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCChhHHHHhcccCceEccCCCchhhh
Q 008720 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 235 (556)
|++++++.+++.+.+.+++++|+|++++.++......+...... ......+...+.+.+++.+++++.+++......+
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999999999888886666654432 2334455567789999999999998887666543
Q ss_pred hhcc---cCC------------CCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHHHHHHH
Q 008720 236 RLLV---GRY------------VPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVV 299 (556)
Q Consensus 236 ~~~~---~~~------------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~ 299 (556)
.... ... ..+.++.+.+| +..++..+|++.+....+ +.|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVP--------------IISGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEE--------------EEETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEee--------------eecccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 3211 111 45677888888 667778899999998887 99999999999999
Q ss_pred HHHHHHHH
Q 008720 300 ADQVAVAL 307 (556)
Q Consensus 300 a~~~~~al 307 (556)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 68
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.79 E-value=2.3e-07 Score=101.08 Aligned_cols=172 Identities=11% Similarity=0.061 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccc---cccccccCChhHHHHhc
Q 008720 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFN 219 (556)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~ 219 (556)
...+.++++.+.+..|++++++.+...+.+.+.+|++.|.++|+....... +..+.... .........++++.++.
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 456889999999999999999999999999999999999999987765544 33222111 11233456777889999
Q ss_pred ccCceEccCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHH
Q 008720 220 SAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (556)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (556)
+++++..++..-..++.-. .....++....+.+| +..++.++|++++....+..|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~lgvP--------------l~~~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMP--------------LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccceEEec--------------eeeCCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988875544332211 234445566666688 6678888999999887789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 299 VADQVAVALSHAAILEDSMRARNQLMEQNVA 329 (556)
Q Consensus 299 ~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~ 329 (556)
+|.++++++++++.+++..+..+.|++...+
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998888777776554444
No 69
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=98.72 E-value=2.2e-08 Score=81.75 Aligned_cols=81 Identities=36% Similarity=0.663 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhcc
Q 008720 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+|...+.+++.|++.||++|+.. +.+.+.....+. .+.+.|.|+|.|++++...++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~--------------------~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD--------------------HLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHhcC
Confidence 37788999999999999999987 444444433322 389999999999999999999999
Q ss_pred CcccCCCCCCCCCCceeeeccc
Q 008720 534 FAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k 555 (556)
++..+.......+.|+||++|+
T Consensus 61 ~~~~~~~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 61 FFRTDGRSRKIGGTGLGLSIVK 82 (111)
T ss_pred eEECCCCCCCCCcccccHHHHH
Confidence 8876532222347899999886
No 70
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.70 E-value=5.5e-09 Score=113.99 Aligned_cols=208 Identities=30% Similarity=0.365 Sum_probs=163.6
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
+...++||+++|++. +....+.....+.+++.+.............+++++++.++.+.+...+.-.++++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 889999999999887 444455556778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCC-----CC-----
Q 008720 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD-----WR----- 496 (556)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~-----~~----- 496 (556)
...+......++..+-...+.+.|..+.+|+..+.|++.|++.||+|++..|.+.......+...... |.
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~ 381 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHM 381 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhhhhhhh
Confidence 99999999999998888887777888889999999999999999999998887776665443321110 10
Q ss_pred -------------CCCCCCCC-C--CC--ceEEEEEEEecCCCCCCCChhh-hhccCcccCCCCCC-CCCCceeeecccC
Q 008720 497 -------------PPEFYPVS-T--DG--HFYLRVQVNDSGCGVPPQDIPL-LFTKFAQSRGSSCQ-TPRAGLGLAICRR 556 (556)
Q Consensus 497 -------------~~~~~~~~-~--~~--~~~v~i~V~DnG~Gi~~e~~~~-iF~~f~~~~~~~~~-~~G~GlGL~i~k~ 556 (556)
++.-.+.. . .. -..-.+.+.|+|.||+.+.... +|.+|-+.....++ .+|+|+|+.+|+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~ 461 (786)
T KOG0519|consen 382 AGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFS 461 (786)
T ss_pred ccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhcc
Confidence 00000000 0 00 0123577889999999999887 99999876665543 4699999998863
No 71
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.69 E-value=3e-08 Score=87.06 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|+||+++...+.|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED--------------------RLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC--------------------EEEEEEEECCcCCChHHhcccc
Confidence 5566888999999999999854 334444443322 3999999999999998888889
Q ss_pred ccCcccCCCCCCCCCCceeeecccC
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.||++.+.... ..+.|+||+++++
T Consensus 99 ~p~~~~~~~~~-~~~~G~GL~li~~ 122 (161)
T PRK04069 99 GPYDISKPIED-LREGGLGLFLIET 122 (161)
T ss_pred CCCCCCCcccc-cCCCceeHHHHHH
Confidence 99876544321 2367999998863
No 72
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.69 E-value=1e-06 Score=92.44 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCC-hhHHHHhcccC
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINL-PIVTDVFNSAQ 222 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 222 (556)
..+++++..|.++++.+++++.+++.+.+.++++.|+|.+++++......+.+..... .....+... |.+..++.++.
T Consensus 4 ~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~-~~~~~~~geGP~l~av~~~g~ 82 (509)
T PRK05022 4 DALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDV-LGRRFALEEHPRLEAILRAGD 82 (509)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHh-hCCccCCCcchHHHHHHhcCC
Confidence 4688999999999999999999999999999999999999886433333223322222 122444444 46788888788
Q ss_pred ceEccCCCchhhhh--hcc-cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHH
Q 008720 223 AMRLPYNCPLARIR--LLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVV 299 (556)
Q Consensus 223 ~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~ 299 (556)
++++++....+.+- ... .....+.++.+++| +..++.++|++.++...+..|++.+..++..+
T Consensus 83 ~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vP--------------L~~~~~~~GvL~l~~~~~~~f~~~~~~~l~~~ 148 (509)
T PRK05022 83 PVRFPADSELPDPYDGLIPGVQESLPVHDCMGLP--------------LFVDGRLIGALTLDALDPGQFDAFSDEELRAL 148 (509)
T ss_pred eEEEecCCCCCcccccccccccccCCcceEEEEE--------------EEECCEEEEEEEEeeCCCCcCCHHHHHHHHHH
Confidence 88887654433210 001 12233556889999 66677889999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 300 ADQVAVALSHAAILEDSMRARNQLMEQN 327 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~~~~~~l~~~~ 327 (556)
|.+++.++.+++.+++.++...++....
T Consensus 149 a~~~a~Al~~a~~~~~l~~~~~~~~~~~ 176 (509)
T PRK05022 149 AALAAATLRNALLIEQLESQAELPQDVA 176 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877665555443
No 73
>PRK03660 anti-sigma F factor; Provisional
Probab=98.66 E-value=4.3e-08 Score=84.94 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+.+++.|++.||++|+.. +.+.+..... ++ .+.++|.|+|.|||+ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-~~-------------------~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-EE-------------------ELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC-CC-------------------EEEEEEEEccCCCCh--HHHhh
Confidence 5677899999999999998732 3344443332 22 389999999999986 56889
Q ss_pred ccCcccCCCCCCCCCCceeeecccC
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+||+++... ..++|+||+++++
T Consensus 94 ~~~~~~~~~---~~~~GlGL~i~~~ 115 (146)
T PRK03660 94 QPLYTTKPE---LERSGMGFTVMES 115 (146)
T ss_pred CCCcccCCC---CCCccccHHHHHH
Confidence 999875542 2468999998763
No 74
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.59 E-value=5e-06 Score=83.19 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=130.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEE--EEeeccccccccccccCChhHHHHhcccCc
Q 008720 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (556)
Q Consensus 146 l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (556)
+.++-+...+..++.+-++.+++++...+.++-|.+|+.+.++..+++ +.++++...+........+.++.+-.+.++
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 556666778888999999999999999999999999999988866655 455665555556677788999999999999
Q ss_pred eEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHH
Q 008720 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (556)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~ 303 (556)
+.+.+.+.+++|++........=++.+.+| +-..+...||+++.++..|.|.++|.+++.++|.++
T Consensus 85 lNLsdAqsHPsF~Y~petgEE~Y~sFLGvP--------------Ii~~~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~l 150 (756)
T COG3605 85 LNLADAQSHPSFKYLPETGEERYHSFLGVP--------------IIRRGRLLGVLVVQQRELRQYDEDEVEFLVTLAMQL 150 (756)
T ss_pred CChhhhhhCCccccccccchHHHHHhhccc--------------eeecCceeEEEEEecccccccchHHHHHHHHHHHHH
Confidence 999999999999876555555556777777 556677899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008720 304 AVALSHAAIL 313 (556)
Q Consensus 304 ~~al~~a~~~ 313 (556)
+-.+.++++.
T Consensus 151 A~iva~~el~ 160 (756)
T COG3605 151 AEIVAQSQLT 160 (756)
T ss_pred HHHHHhhhhh
Confidence 9999888876
No 75
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.59 E-value=5.5e-08 Score=101.43 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...|.+++.||+.||+++...+ .+.+.+...+.. ++.++|+|||+|||++.++++|
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iF 93 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVF 93 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhh
Confidence 33446699999999999998753 343333222222 4899999999999999999999
Q ss_pred ccCcccCCCC---CCCCCCceeeeccc
Q 008720 532 TKFAQSRGSS---CQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~---~~~~G~GlGL~i~k 555 (556)
++|++++.-. ...++.|+||++++
T Consensus 94 erF~atSK~~~~~qS~G~rG~GLa~a~ 120 (659)
T PRK14867 94 GKMLAGSKMHRLIQSRGQQGIGAAGVL 120 (659)
T ss_pred ccccccCcccceeccCCCCcccHHHHH
Confidence 9988754211 12346889987653
No 76
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.55 E-value=1.7e-06 Score=73.82 Aligned_cols=143 Identities=23% Similarity=0.263 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEccCCC-CCeeEEEEeeccc-cccccccccCChhHHHHhcccCceEccCCCchhhh
Q 008720 158 DRHTILKTTLVELGRTLGLEECALWMPSRT-GLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 235 (556)
|.+++++.+++.+.+.+++++++|++.+++ ..........+.. ...+..++...+.+..++.++++..+++.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 457889999999999999999999999974 3333333222221 12234466666888999999988888765543311
Q ss_pred hhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008720 236 RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 236 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~ 314 (556)
.........+..+.+.+| +..++..+|++.+... .++.|++.+..++..++.+++.++++.+..+
T Consensus 81 ~~~~~~~~~~~~s~~~~P--------------l~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVP--------------LVADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEee--------------eeecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100011111256667777 4456677888888877 6889999999999999999999998777554
No 77
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.50 E-value=7.5e-07 Score=77.13 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccc--cccCC--hh-------HHHHhcccCceEc
Q 008720 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPINL--PI-------VTDVFNSAQAMRL 226 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-------~~~v~~~~~~~~l 226 (556)
+.+++++.+++.+.+.++++.++|++.|+++.....++........... .+... .. -..++.+++++++
T Consensus 3 ~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (148)
T PF13185_consen 3 DLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPIII 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEEE
Confidence 6788999999999999999999999998877555555544332221111 11111 11 1123888999999
Q ss_pred c-CCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHH
Q 008720 227 P-YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAV 305 (556)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~ 305 (556)
+ +..... ........+..+.+.+| +..++..+|++.+.+..++.|+++++++++.+|++++.
T Consensus 83 ~~~~~~~~---~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~ 145 (148)
T PF13185_consen 83 NDDDSSFP---PWELARHPGIRSILCVP--------------LRSGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIAI 145 (148)
T ss_dssp SCCCGGGS---TTHHHCCTT-SEEEEEE--------------EEETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHHH
T ss_pred eCcccccc---chhhhccccCCEEEEEE--------------EeECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 8 221111 12334456778888999 55666889999999988899999999999999999999
Q ss_pred HHH
Q 008720 306 ALS 308 (556)
Q Consensus 306 al~ 308 (556)
+|+
T Consensus 146 aie 148 (148)
T PF13185_consen 146 AIE 148 (148)
T ss_dssp HHH
T ss_pred HhC
Confidence 984
No 78
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.45 E-value=4e-07 Score=79.60 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|.||+++...+.|
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~gfd~~~~~~~~ 98 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED--------------------RLEIIVSDQGDSFDMDTFKQSL 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC--------------------EEEEEEEEcccccCchhhcccc
Confidence 3445888999999999999843 344444443322 3999999999999999888888
Q ss_pred ccCcccCCCCCCCCCCceeeecccC
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.|++...... ...+.|+||+++|+
T Consensus 99 ~~~~~~~~~~-~~~~~G~GL~Li~~ 122 (159)
T TIGR01924 99 GPYDGSEPID-DLREGGLGLFLIET 122 (159)
T ss_pred CCCCCCCCcc-cCCCCccCHHHHHH
Confidence 8776544332 12366999999874
No 79
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=98.45 E-value=2.1e-07 Score=74.61 Aligned_cols=76 Identities=34% Similarity=0.638 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcCCC--CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCccc
Q 008720 460 LMQTILNIVGNAVKFTKE--GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 460 l~~vl~nLl~NAik~~~~--g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
+.+++.+++.||++|+.. +.+.+..... +. .+.+.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-~~-------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-GD-------------------HLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec-CC-------------------EEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 367899999999999984 4444433332 22 3899999999999999999999877111
Q ss_pred CCCCCCCCCCceeeecccC
Q 008720 538 RGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 538 ~~~~~~~~G~GlGL~i~k~ 556 (556)
.......+.|+||++|++
T Consensus 61 -~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 61 -SRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred -CCCCCCCccccCHHHHHH
Confidence 111123478999988763
No 80
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.40 E-value=2.3e-06 Score=62.35 Aligned_cols=63 Identities=44% Similarity=0.682 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~ 406 (556)
++++.+.++||+||||+.|.++++.+.+...+++..+.++.+...++++..++++++++++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999999999888755555568889999999999999999999998854
No 81
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=3.5e-06 Score=82.64 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCccc
Q 008720 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
..+.+++.||+.||+++.. ..+.+.+. .+. ...|.|.|||.||++++++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~--~~~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIE--EGG-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEE--eCC-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4578999999999999765 44444432 222 2569999999999999999999999988
Q ss_pred CCC
Q 008720 538 RGS 540 (556)
Q Consensus 538 ~~~ 540 (556)
+..
T Consensus 79 k~~ 81 (312)
T TIGR00585 79 KIQ 81 (312)
T ss_pred CCC
Confidence 754
No 82
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.13 E-value=0.0002 Score=68.38 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC----ccccccceeHHHHHHHHHHHHHHhhhcC---CceEEEEeCCCC
Q 008720 377 EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS----LELDNGPFNLQIVLREVIKLIKPVASCK---KLSMTLIMAPEL 449 (556)
Q Consensus 377 ~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~----~~l~~~~~~l~~ll~~~~~~~~~~~~~~---~i~i~~~~~~~~ 449 (556)
..+..|+....+--.+..++++=+.+....... ...-...+++.++++++.+..+..+... .-++.++.....
T Consensus 172 ~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 172 NIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 456667776666666667777655544311111 1112236899999999999888766432 223343333333
Q ss_pred CceEEccHHHHHHHHHHHHHHHhhcC-----CCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCC
Q 008720 450 PTYAVGDEKRLMQTILNIVGNAVKFT-----KEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (556)
Q Consensus 450 ~~~~~~d~~~l~~vl~nLl~NAik~~-----~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~ 520 (556)
...+. -+..|.-++-+++.||.+++ ..+. +.+.+...+++ +.|.|+|.|-
T Consensus 252 ~~~vy-vPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrGG 310 (414)
T KOG0787|consen 252 SFTVY-VPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRGG 310 (414)
T ss_pred cCccc-cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCCC
Confidence 32222 67899999999999999975 2232 44444433333 8899999999
Q ss_pred CCCCCChhhhhccCcccCCCCC-------CCCCCceeeeccc
Q 008720 521 GVPPQDIPLLFTKFAQSRGSSC-------QTPRAGLGLAICR 555 (556)
Q Consensus 521 Gi~~e~~~~iF~~f~~~~~~~~-------~~~G~GlGL~i~k 555 (556)
||+.+..+++|+-.|++.+..+ .-.|.|-||.+||
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisr 352 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISR 352 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHH
Confidence 9999999999999888754422 1138899999986
No 83
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.06 E-value=0.00014 Score=72.44 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCChhHHHHhcc
Q 008720 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~ 220 (556)
...+.+++..+....+.+..+..+.+.+...++++.+++..+++++.......+..... ..........+.+..++..
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 34678888888888899999999999999999999999999998773444444333321 2223566678889999999
Q ss_pred cCceEccCCCchhhhhhcc---cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008720 221 AQAMRLPYNCPLARIRLLV---GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (556)
+.++++...+..+.-.+.. .....+.++.+.+| +..|+..+|++.+....+..++..-.+.+.
T Consensus 113 ~~p~~~~~~d~~~~~~~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~lr 178 (550)
T COG3604 113 GRPLVFHPADSLFPDPYDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEELR 178 (550)
T ss_pred CCcEEEecCCcccCCcccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHHH
Confidence 9999882222222111111 11222457888888 888999999999999888889888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 298 VVADQVAVALSHAAILEDSMRARNQLMEQNVALD 331 (556)
Q Consensus 298 ~~a~~~~~al~~a~~~~~~~~~~~~l~~~~~~l~ 331 (556)
.++..++.+..++.+.++....++.+.+.+.+++
T Consensus 179 ~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~ 212 (550)
T COG3604 179 FLAALAALAVANALLHRELSSLKERLEEENLALE 212 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999888887777766554443
No 84
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.03 E-value=3.8e-05 Score=55.37 Aligned_cols=61 Identities=39% Similarity=0.535 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~ 404 (556)
+.++...++||++||++.+.+.++.+.+... .++....++.+...++++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999999998876533 566778889999999999999999998763
No 85
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.93 E-value=1.9e-05 Score=66.24 Aligned_cols=74 Identities=27% Similarity=0.330 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....+..++.+++.||++|+..+ .+.+......+ .+.++|.|+|.|+++.....--
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~--------------------~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD--------------------RLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC--------------------EEEEEEEECCCCCChhhccCcc
Confidence 44578899999999999999653 33333333222 3999999999999887544321
Q ss_pred ccCcccCCCCCCCCCCceeeeccc
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k 555 (556)
..-. ......|.||++++
T Consensus 88 ~~~~------~~~~~~G~Gl~li~ 105 (125)
T PF13581_consen 88 PWEP------DSLREGGRGLFLIR 105 (125)
T ss_pred cccC------CCCCCCCcCHHHHH
Confidence 1000 11235688888776
No 86
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.89 E-value=1.1e-05 Score=78.51 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
....|.+++.+|++|+++++...+ +.+.+...+. .++.+.|+|||+|||++.+.++|
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~-------------------d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGK-------------------DHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCC-------------------ceEEEEEecCCCCCChhHhHHHH
Confidence 445699999999999999987533 3343333322 26999999999999999999999
Q ss_pred ccCcc
Q 008720 532 TKFAQ 536 (556)
Q Consensus 532 ~~f~~ 536 (556)
-+++-
T Consensus 94 Gk~Ly 98 (538)
T COG1389 94 GKMLY 98 (538)
T ss_pred HHHhc
Confidence 77653
No 87
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.82 E-value=0.00092 Score=73.47 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=100.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecc-ccccccccc-cCChhHHHHhcc--
Q 008720 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QIQIGSSVP-INLPIVTDVFNS-- 220 (556)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~v~~~-- 220 (556)
.+..+...+....+.+++.+.+++.+.+..+.+.++|++++++...+......+. ....+.... ...+....++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 4566777888888999999999999999999999999999988776644332221 111111111 122334555555
Q ss_pred cCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHH
Q 008720 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (556)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a 300 (556)
++...+.+........ .....+.+.+| |..++.++|++.++...++.|+++++.++..+|
T Consensus 369 ~~~~~~~~~~~~~~~~------~~~~~s~~~vP--------------L~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG------TVDGSAVAAVP--------------LVYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc------ccCCceEEEEe--------------EEECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 5555554332211110 00112777888 778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008720 301 DQVAVALSHA 310 (556)
Q Consensus 301 ~~~~~al~~a 310 (556)
.+++.+|...
T Consensus 429 ~~ia~aI~~~ 438 (665)
T PRK13558 429 RAVGAAINAL 438 (665)
T ss_pred HHHHHHHHHH
Confidence 9999999543
No 88
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.77 E-value=2.9e-05 Score=68.50 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCC--eeEEEEe-ec--cc-ccccccc-ccCChhHH
Q 008720 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSYT-LN--NQ-IQIGSSV-PINLPIVT 215 (556)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~~~-~~--~~-~~~~~~~-~~~~~~~~ 215 (556)
...+.+++..+....+.+++++.+++.+.+.++++++.|+..+.+.. ...+... .. .. ....... +.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T COG2203 3 EALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIG 82 (175)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhh
Confidence 34577888889999999999999999999999999999999887753 1111110 00 00 0000011 11222345
Q ss_pred HHhcccCceEccCCCchhhhhhcccCCCCC-cceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC-ccccchH
Q 008720 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPP-DIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 293 (556)
Q Consensus 216 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~ 293 (556)
.+...+.+..+.+......+.........+ ..+.+.+| +..++..+|++.+....+. .|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vP--------------l~~~~~~~G~l~~~~~~~~~~~~~~e~ 148 (175)
T COG2203 83 IALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVP--------------LIAQGELLGLLCVHDSEPRRQWSEEEL 148 (175)
T ss_pred hhhcCCceEEeeccccCcccccCHHHHHHHHHHHheeee--------------eeECCEeeEEeeeeccCCCCCCCHHHH
Confidence 556677777777666555443211111111 35667777 4555567888888877655 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008720 294 ELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 294 ~ll~~~a~~~~~al~~a~~~~~ 315 (556)
.++..+|.++++++.+++.+++
T Consensus 149 ~ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 149 ELLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887665
No 89
>TIGR02851 spore_V_T stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See PFAM model pfam04014).
Probab=97.61 E-value=0.001 Score=58.90 Aligned_cols=126 Identities=12% Similarity=0.017 Sum_probs=95.2
Q ss_pred cCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhh
Q 008720 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 156 ~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 235 (556)
..++.+.++.+++.+.+.+++ +++| +++.-.++|..........+ + -+..+.+++.+++.....+.... .+
T Consensus 51 ~~~~~~~A~~~aeII~~~t~~-aVaI-----TDr~~ILA~~G~g~d~~~~~-~-is~~t~~~i~~gk~~~~~~~~~~-~i 121 (180)
T TIGR02851 51 IGELGDFAKEYAESLYQSLGH-IVLI-----TDRDTVIAVAGVSKKEYLNK-P-ISDELEDTMEERKTVILSDTKDG-PI 121 (180)
T ss_pred ccchHHHHHHHHHHHHHHhCC-EEEE-----ECCCcEEEEECCChhhcCCC-c-cCHHHHHHHHcCCEEEecCCccc-ee
Confidence 346778899999999999999 9999 88888888775544333333 5 67788999999999888753310 01
Q ss_pred hhccc-CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC--ccccchHHHHHHHHHHHHHHH
Q 008720 236 RLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR--KWRDHELELIDVVADQVAVAL 307 (556)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~--~~~~~e~~ll~~~a~~~~~al 307 (556)
.+. ...++..+.+.+| +..++.++|.+.++ ...+ .+++.+.+++..+|..++.++
T Consensus 122 --~c~~~~~~~l~s~ii~P--------------l~~~g~viGtLkly-~k~~~~~~~~~e~~la~glA~lLS~QL 179 (180)
T TIGR02851 122 --EIIDGQEFEYTSQVIAP--------------IIAEGDPIGAVIIF-SKEPGEKLGEVEQKAAETAAAFLGKQM 179 (180)
T ss_pred --ccccCCCCCcceEEEEE--------------EEECCeEEEEEEEE-ECCccCCCCHHHHHHHHHHHHHHHHhh
Confidence 123 4556778999999 55666789988888 5555 899999999999999998776
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.61 E-value=0.00017 Score=61.59 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKE-----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~-----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~i 530 (556)
+...+.-++.+++.||++|+.+ |.+.+.....++ .+.+.|.|.|+|++ ..++.
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~--------------------~~~i~i~D~G~~~~--~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG--------------------KLEIRIWDQGPGIE--DLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC--------------------eEEEEEEeCCCCCC--CHHHh
Confidence 6678899999999999999854 555555555444 39999999996664 45666
Q ss_pred hccCcccCCCCCCCCCCceeeecccC
Q 008720 531 FTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 531 F~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+.|.+.+.+.. ..-|+||++.++
T Consensus 95 ~~~~~~~~~~~---~~~G~Gl~l~~~ 117 (146)
T COG2172 95 LGPGDTTAEGL---QEGGLGLFLAKR 117 (146)
T ss_pred cCCCCCCCccc---ccccccHHHHhh
Confidence 77775443322 223777776653
No 91
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.34 E-value=0.00031 Score=75.31 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCccc
Q 008720 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
..+..++.+|+.||++++ +..+.+.+. .++ ...|+|+|||+||+++.++..|.++.++
T Consensus 21 ~~~~svvkElveNsiDAg-at~I~v~i~--~~g-------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 21 ERPASVVKELVENALDAG-ATRIDIEIE--EGG-------------------LKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred cCHHHHHHHHHHHHHhCC-CCEEEEEEE--eCC-------------------eEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 347789999999999966 455555552 222 2689999999999999999999998876
Q ss_pred CCC
Q 008720 538 RGS 540 (556)
Q Consensus 538 ~~~ 540 (556)
|-.
T Consensus 79 Ki~ 81 (617)
T PRK00095 79 KIA 81 (617)
T ss_pred CCC
Confidence 643
No 92
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.22 E-value=4.2e-05 Score=65.08 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCC
Q 008720 461 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (556)
Q Consensus 461 ~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~ 539 (556)
..++.+||.||+++.. ..+.+.+...+... -.|.|.|||.||+.+.+.+.|....+.+.
T Consensus 4 ~~al~ElI~Ns~DA~a-~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~ 62 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA-TNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKK 62 (137)
T ss_dssp THHHHHHHHHHHHHHH-HHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHH
T ss_pred HHHHHHHHHHHHHccC-CEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCC
Confidence 4688999999999664 34666555543222 47999999999999999998876665543
No 93
>PF14501 HATPase_c_5: GHKL domain
Probab=96.98 E-value=0.0021 Score=51.31 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-C-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhcc
Q 008720 456 DEKRLMQTILNIVGNAVKFTKE-G-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~-g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
+...+..++.||+.||++++.. + ...+.+.....++ .+.|.|++.-.+ +. ++++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~------------------~~~i~i~N~~~~---~~-~~~~-- 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG------------------FLVIIIENSCEK---EI-EKLE-- 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC------------------EEEEEEEECCCC---cc-cccc--
Confidence 4566889999999999998743 1 2223332222221 489999887444 21 2222
Q ss_pred CcccCCCCCCCCCCceeeecccC
Q 008720 534 FAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 534 f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
+. .+...+.|+||.++++
T Consensus 58 --~~---~~~~~~~G~GL~~v~~ 75 (100)
T PF14501_consen 58 --SS---SSKKKGHGIGLKNVKK 75 (100)
T ss_pred --cc---ccCCCCCCcCHHHHHH
Confidence 11 1223588999998874
No 94
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0015 Score=69.91 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
+...|+.+|++||++++. ..|.+....++- -.|.|+|||+||++++++-.+.++.|.|
T Consensus 23 rPaSVVKELVENSlDAGA---t~I~I~ve~gG~-------------------~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA---TRIDIEVEGGGL-------------------KLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC---CEEEEEEccCCc-------------------cEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 466899999999999665 233333333331 3599999999999999999999998776
Q ss_pred CC
Q 008720 539 GS 540 (556)
Q Consensus 539 ~~ 540 (556)
-.
T Consensus 81 I~ 82 (638)
T COG0323 81 IA 82 (638)
T ss_pred CC
Confidence 44
No 95
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=96.49 E-value=0.13 Score=43.52 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHhhhC-CceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhhhh
Q 008720 159 RHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 237 (556)
.-..+..+...+.+.+. .+-+.+|+.+ +..+.+.--.+ ...-..+|...+.++.+.++++..++.+......
T Consensus 33 ~ianlan~sall~~~l~~~nW~GFYl~~--~~~LvLgPFqG--~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g--- 105 (163)
T COG1956 33 FIANLANASALLKERLPDVNWVGFYLLE--GDELVLGPFQG--KVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG--- 105 (163)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEec--CCeEEEecccC--CcceEEeccCcchhHHHHhcCCeEEecccccCCC---
Confidence 33445555566666554 8889999988 33343322222 2444578889999999999999999998765432
Q ss_pred cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHH
Q 008720 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVA 306 (556)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~a 306 (556)
........++.+.+| +..++..+|++=+.+.....|++.+...++.++..+.-.
T Consensus 106 -hiaCD~as~SEIVvP--------------i~~~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~~ 159 (163)
T COG1956 106 -HIACDAASNSEIVVP--------------IFKDGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEKS 159 (163)
T ss_pred -ccccccccCceEEEE--------------EEECCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112224567788899 556888899999999999999999999999999887643
No 96
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.46 E-value=0.0022 Score=68.66 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh-----
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~----- 529 (556)
+...+..++.+++.||++....|. ..|.+....+. .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg---------------------~I~V~DnGrGIP~~~~~~~~~~~ 92 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG---------------------SVSVRDNGRGIPVGIHPEEGKSG 92 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC---------------------cEEEEEcCCCCCcccccccCCcc
Confidence 456789999999999999755442 22333322221 589999999999998887
Q ss_pred ---hhccCcccCCCC----CCCCC-Cceeeecc
Q 008720 530 ---LFTKFAQSRGSS----CQTPR-AGLGLAIC 554 (556)
Q Consensus 530 ---iF~~f~~~~~~~----~~~~G-~GlGL~i~ 554 (556)
+|.....+..-. ....| .|.|++.|
T Consensus 93 ~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~v 125 (631)
T PRK05559 93 VEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVV 125 (631)
T ss_pred hheeeeeccccCccCCccccccCcccccchhhh
Confidence 776643322110 01123 68888765
No 97
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=96.32 E-value=0.24 Score=43.98 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=87.0
Q ss_pred hhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEcc-------CCC-CCeeEEEEeecccccccccc
Q 008720 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMP-------SRT-GLNLELSYTLNNQIQIGSSV 207 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~-------~~~-~~~~~~~~~~~~~~~~~~~~ 207 (556)
+.+..+-++.+-+.+..|-+..++++....++.++...++.+..+++.. +.+ +....++....-....+...
T Consensus 14 Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~~~~~~ 93 (174)
T PF11849_consen 14 IERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESLIGQPL 93 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhhcCCcc
Confidence 3444445667778888888899999999999999999999998887761 111 11223332222111112111
Q ss_pred c-cCC----hhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc
Q 008720 208 P-INL----PIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (556)
Q Consensus 208 ~-~~~----~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (556)
. ... ..+.+++.+++...-+ ....+- ++.....-+++++..
T Consensus 94 ~~~~~~~i~~~~~~a~~~~~~~~~~------------------~~~~ly----------------~~~~~g~~~~iyl~~ 139 (174)
T PF11849_consen 94 DDLLPPEIRAALQQALSSKRSIFEE------------------DHFVLY----------------FPSSSGRESLIYLEG 139 (174)
T ss_pred cccCCHHHHHHHHHHHHcCCeEecC------------------CeEEEE----------------EecCCCCEEEEEEeC
Confidence 1 122 2234444443332211 111111 112222234555555
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~ 317 (556)
. ++.++.+.++++.++..++++++|..+++++.
T Consensus 140 ~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 140 D--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 58999999999999999999999999887654
No 98
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=96.21 E-value=0.07 Score=39.88 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=58.8
Q ss_pred HHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHH
Q 008720 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (556)
++|.+||-|..|.+++.+-.....+++.+..+..+......+..+-+.+.. .-....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~---------~~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQ---------SEDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCeecHHHHHHHHHHHH
Confidence 689999999999999999988888888888888888877777777666532 11334799999999999877
Q ss_pred HH
Q 008720 431 KP 432 (556)
Q Consensus 431 ~~ 432 (556)
..
T Consensus 73 ~~ 74 (76)
T PF07568_consen 73 RQ 74 (76)
T ss_pred HH
Confidence 53
No 99
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=95.93 E-value=0.01 Score=63.60 Aligned_cols=52 Identities=25% Similarity=0.423 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
+..-|..++.+++.||++...+| ...|.+....++ .|+|.|||+|||.+...
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~ 86 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG---------------------SITVTDNGRGIPVDIHP 86 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC---------------------cEEEEEeCccccCCccC
Confidence 55678999999999999954444 222333222221 49999999999987543
No 100
>PRK14083 HSP90 family protein; Provisional
Probab=95.44 E-value=0.013 Score=62.13 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCC---------CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 462 QTILNIVGNAVKFTKE---------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 462 ~vl~nLl~NAik~~~~---------g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
..+.+|+.||.++... +.+.+... +.+. -.++|+|||+||+.+.+.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~--d~~~-------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT--DAGG-------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc--cCCC-------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4578999999888532 23333332 1111 578999999999999988765
No 101
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=95.20 E-value=0.021 Score=61.78 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++.-+.+++.++|.||++...+| ...|.+....++ .|+|.|||+|||.+..
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h 78 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG---------------------SVTVEDNGRGIPVDIH 78 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC---------------------cEEEEEeCCCcCcccc
Confidence 44668999999999999954444 223333323222 3999999999998743
No 102
>PRK05218 heat shock protein 90; Provisional
Probab=94.97 E-value=0.02 Score=61.39 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCCCChhhhhcc
Q 008720 512 RVQVNDSGCGVPPQDIPLLFTK 533 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~ 533 (556)
.|+|+|||+||+.+++..-|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ 95 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGT 95 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4999999999999998876643
No 103
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=94.95 E-value=0.32 Score=45.21 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccc
Q 008720 129 LDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVP 208 (556)
Q Consensus 129 l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (556)
+++-.+..+..++....+.++...+.+..+.+++.+.+...+.+.++++.|.+++.++........ .. ...
T Consensus 63 l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~---~~------~~~ 133 (225)
T PF04340_consen 63 LEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSL---TD------HVW 133 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccch---hh------ccc
Confidence 333333344444445667788888899999999999999999999999999999988654421100 00 000
Q ss_pred cCChhHHHH----hcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC
Q 008720 209 INLPIVTDV----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 209 ~~~~~~~~v----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~ 284 (556)
........+ +..+++..-+........=| . ....+..+...+| |. .+..+|++.+.+..
T Consensus 134 ~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~~lF-~-~~~~~v~S~Alip--------------L~-~~~~~G~LalGS~D 196 (225)
T PF04340_consen 134 LSRDAFAQVFIDLLGLQQPYCGRLSEEEAALLF-G-DEAAQVGSVALIP--------------LG-SGRPIGLLALGSRD 196 (225)
T ss_dssp E-HHHHHHHHCCCHTT---CCCS--HHHHHHHH-H-HCHCC-SEEEEEE--------------EE-SSSEEEEEEEEESS
T ss_pred ccHHHHHHHHHHHhCCCCceeCCCCcchhHHhc-C-CCCccccchheee--------------cc-CCCceEEEEecCCC
Confidence 011111111 11122211111111110000 0 0123344555556 44 44568888888876
Q ss_pred CCccc-cchHHHHHHHHHHHHHHHHH
Q 008720 285 GRKWR-DHELELIDVVADQVAVALSH 309 (556)
Q Consensus 285 ~~~~~-~~e~~ll~~~a~~~~~al~~ 309 (556)
+..|+ .....++..+|..++.++.+
T Consensus 197 ~~rF~p~mgT~fL~~La~vv~~~L~r 222 (225)
T PF04340_consen 197 PDRFQPDMGTDFLEQLAEVVSAALER 222 (225)
T ss_dssp TTCCCSTTTTHHHHHHHHHHHHHGGG
T ss_pred hhhCCCCccHHHHHHHHHHHHHHHhc
Confidence 55555 56778899999999888753
No 104
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=94.95 E-value=0.013 Score=62.55 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhh---cCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC--------h
Q 008720 459 RLMQTILNIVGNAVK---FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------I 527 (556)
Q Consensus 459 ~l~~vl~nLl~NAik---~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~--------~ 527 (556)
.+..++.++|.||++ +.....+.+.+ ..+. .|+|.|||+|||.+. .
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~a~~I~V~i--~~d~---------------------~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGFASIIMVIL--HQDQ---------------------SIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred CcceeehhhhhcccchhhcCCCCEEEEEE--eCCC---------------------eEEEEecCCccCcccccccCCcHH
Confidence 347889999999999 43333344433 2222 599999999999988 6
Q ss_pred hhhh
Q 008720 528 PLLF 531 (556)
Q Consensus 528 ~~iF 531 (556)
+-+|
T Consensus 87 e~v~ 90 (625)
T TIGR01055 87 EVIL 90 (625)
T ss_pred HHhh
Confidence 6666
No 105
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.51 E-value=0.054 Score=58.34 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.5
Q ss_pred EEEEEEecCCCCCCCChhhh
Q 008720 511 LRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~~i 530 (556)
..++|.|||+||+++.+.+-
T Consensus 72 ~~L~I~DnGiGMt~edl~~~ 91 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNN 91 (701)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 47899999999998876543
No 106
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=94.23 E-value=0.015 Score=62.04 Aligned_cols=48 Identities=31% Similarity=0.490 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcCCCCe-EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChh
Q 008720 460 LMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 460 l~~vl~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
|.+++.+++.||++..-.|. ..|.+....++ .|+|.|||.|||.+..+
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~ 50 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN---------------------SISVEDNGRGIPVEIHP 50 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC---------------------eEEEEEeCCceeCCccC
Confidence 34577889999999874432 22222222221 59999999999976643
No 107
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=94.05 E-value=0.051 Score=58.21 Aligned_cols=51 Identities=31% Similarity=0.466 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeE-EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++.-|..++.++|.||++-...|.. .|.+....+ =.|+|.|||.|||.+..
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~d---------------------gsitV~DnGrGIPv~~h 82 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKD---------------------NSITVQDDGRGIPTGIH 82 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEcCC---------------------CeEEEEECCCcccCccc
Confidence 4566888899999999986543322 222222222 25899999999997643
No 108
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.049 Score=56.75 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=15.5
Q ss_pred EEEEEEecCCCCCCCChhh
Q 008720 511 LRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~~ 529 (556)
=.++|+|||+||+.+++..
T Consensus 74 kTLtI~DNGIGMT~~Ev~~ 92 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIE 92 (623)
T ss_pred CEEEEEeCCCCCCHHHHHH
Confidence 3799999999999877543
No 109
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=93.77 E-value=0.067 Score=58.10 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 458 KRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..++.+++.||++-.-.| ...|.+....++ .|+|.|||+|||.+..
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg---------------------sIsV~DnGrGIPvd~h 85 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG---------------------SVSVSDNGRGIPTDIH 85 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCCC---------------------eEEEEEcCCcccCCcc
Confidence 458999999999999954444 222333222221 5999999999998743
No 110
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=0.14 Score=42.19 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKP 489 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~ 489 (556)
-+.-+..+|++||+||...|.+++.....+.
T Consensus 63 svgYl~NELiENAVKfra~geIvieasl~s~ 93 (184)
T COG5381 63 SVGYLANELIENAVKFRATGEIVIEASLYSH 93 (184)
T ss_pred hHHHHHHHHHHhhhcccCCCcEEEEEEeccc
Confidence 3556788999999999998877766655443
No 111
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=93.25 E-value=0.067 Score=56.92 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.9
Q ss_pred EEEEEecCCCCCCCCh
Q 008720 512 RVQVNDSGCGVPPQDI 527 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~ 527 (556)
.|+|.|||.|||-+..
T Consensus 80 sisV~dnGrGIPv~~h 95 (602)
T PHA02569 80 QVTVSDNGRGIPQAMV 95 (602)
T ss_pred EEEEEECCCcccCCcc
Confidence 5999999999998654
No 112
>PLN03128 DNA topoisomerase 2; Provisional
Probab=92.89 E-value=0.16 Score=57.84 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCeE-EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 458 KRLMQTILNIVGNAVKFT-KEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~-~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..+|.++|.||++.. .+|.. .+.+....++ =.|+|.|||.|||-+..
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~d--------------------gsIsV~DnGrGIPv~ih 102 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQ--------------------NTISVYNNGKGIPVEIH 102 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCC--------------------CeEEEEecCccccCCCC
Confidence 347788888888888865 22322 2222222212 25999999999997654
No 113
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=92.71 E-value=0.79 Score=34.81 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHH
Q 008720 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
.+++.+ +|.+.|.|++|.+.+.. ..++..+++..+.++.|..- ......+.+.
T Consensus 5 L~~QIn-----PHFl~NtLn~I~~l~~~-------------------~~~~~~~~i~~ls~~lRy~l---~~~~~~v~l~ 57 (82)
T PF06580_consen 5 LQAQIN-----PHFLFNTLNSISWLARI-------------------DPEKASEMILSLSDLLRYSL---SSKEEFVTLE 57 (82)
T ss_pred HHhhcC-----hHHHHHHHHHHHHHHHc-------------------CHHHHHHHHHHHHHHHHHHh---CCCCCeeeHH
Confidence 344556 99999999999887432 23444555555555554322 2334478999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEE
Q 008720 421 IVLREVIKLIKPVASCKKLSMTL 443 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~i~~ 443 (556)
+-++.+..++....-+.+-.+++
T Consensus 58 ~El~~i~~Yl~i~~~R~~~~l~~ 80 (82)
T PF06580_consen 58 EELEFIENYLEIQKIRFGDRLEY 80 (82)
T ss_pred HHHHHHHHHHHHHHHHCCCceEe
Confidence 99998888887665544444443
No 114
>PLN03237 DNA topoisomerase 2; Provisional
Probab=91.82 E-value=0.21 Score=57.57 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCeE-EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 459 RLMQTILNIVGNAVKFT-KEGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~-~~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..+|.++|.||++.. .+|.. .+.+.....+ =.|+|.|||.|||-+..
T Consensus 77 GL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~--------------------gsIsV~DnGRGIPV~iH 127 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ--------------------NLISVYNNGDGVPVEIH 127 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC--------------------CEEEEEecCccccCCCC
Confidence 46777888888888765 22222 2222222121 25999999999997654
No 115
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=91.71 E-value=0.26 Score=56.96 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhcCC----CCeE-EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 459 RLMQTILNIVGNAVKFTK----EGYV-SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~----~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..+|.++|.||++... .|.. .|.+....+. =.|+|.|||.|||-+..
T Consensus 57 GL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~--------------------g~IsV~dnGrGIPv~~h 110 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN--------------------GEISVYNDGEGIPVQIH 110 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC--------------------CeEEEEecCCcccCCCC
Confidence 467778888888877643 2332 2222222221 15999999999997654
No 116
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=91.37 E-value=0.06 Score=55.85 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEE-EEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh
Q 008720 458 KRLMQTILNIVGNAVKFTKEGYVSI-IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~ 529 (556)
.-|..++.+.+.||++-+-.|.... .+....++ .|+|.|||.|||-+..++
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~---------------------sisV~DnGRGIPvdiH~~ 86 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG---------------------SISVEDNGRGIPVDIHPK 86 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC---------------------eEEEEECCCCCccccCCC
Confidence 5577777777788877554333222 22222222 599999999999877433
No 117
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=91.20 E-value=0.057 Score=58.85 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCeEE-EEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGYVS-IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
+..-|.+++.++|.||++-.-.|... |.+....++ .|+|+|||.|||-+..+
T Consensus 126 ~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg---------------------sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 126 DEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG---------------------SVEISDNGRGIPCDVSE 178 (903)
T ss_pred CCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC---------------------eEEEEeCCccccccccc
Confidence 33446777888888888855443322 222222222 48999999999976543
No 118
>PTZ00130 heat shock protein 90; Provisional
Probab=90.81 E-value=0.18 Score=54.83 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.4
Q ss_pred EEEEEecCCCCCCCChhh
Q 008720 512 RVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~ 529 (556)
.++|+|||+||+.+.+.+
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 689999999999888654
No 119
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=90.76 E-value=0.29 Score=51.29 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 460 l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
+.-++.+|+.|+++++.. .+.+. ..+-+- =.|+|+|||+||++...+-+=.++++.+
T Consensus 21 l~sAVKELvENSiDAGAT-~I~I~--~kdyG~-------------------d~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGAT-AIDIK--VKDYGS-------------------DSIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred HHHHHHHHHhcCcccCCc-eeeEe--cCCCCc-------------------ceEEEecCCCCCCccchhhhhhhhhhhc
Confidence 457899999999986542 23333 222221 3599999999999988776655555544
No 120
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=90.25 E-value=1.6 Score=31.08 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTT 394 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~ 394 (556)
.++..-||+.|-|.+|.|++++- ..++..++++.+....+..+.
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHH
Confidence 34445899999999999998863 234455666666555554433
No 121
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=90.12 E-value=0.39 Score=49.19 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 460 l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
..-++.+|++|++++.. ..|.+...+++- =.+.|+|||.||-.++++-+=++|-+.|
T Consensus 28 P~NAlKEliENSLDA~S---T~I~V~vk~GGL-------------------KLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 28 PVNALKELIENSLDANS---TSIDVLVKDGGL-------------------KLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred hHHHHHHHHhccccCCC---ceEEEEEecCCe-------------------EEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 44567889999998543 334444444441 3477889999999999999988887655
No 122
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=89.41 E-value=7.1 Score=34.33 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=29.5
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHH
Q 008720 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 268 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a 310 (556)
+..++...|.+++.... ..|+++|+-+.+..|..+++.+.+.
T Consensus 115 I~g~GeRLGTLvl~r~~-~~F~ddDLILaEY~ATVVGmEiLr~ 156 (177)
T PF06018_consen 115 IYGGGERLGTLVLARFD-KEFTDDDLILAEYGATVVGMEILRS 156 (177)
T ss_dssp EEETTEEEEEEEEEESS-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCeEEEEEEEEEcC-CCCChhhhHHHHHHHHHHHHHHHHH
Confidence 55566668888877653 4899999999999999998887444
No 123
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=88.13 E-value=0.67 Score=48.61 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCccc
Q 008720 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~ 537 (556)
.-+.|++.+|+-|++++.. ..+.+.+.. . ...+.|.|||.|+..+++..+-+++|+.
T Consensus 20 ~sla~~VeElv~NSiDA~A-t~V~v~V~~--~--------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA-TCVAVRVNM--E--------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccCc-eEEEEEecC--c--------------------eeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 3588999999999998654 233333322 1 2789999999999999999999999876
Q ss_pred C
Q 008720 538 R 538 (556)
Q Consensus 538 ~ 538 (556)
+
T Consensus 77 K 77 (1142)
T KOG1977|consen 77 K 77 (1142)
T ss_pred h
Confidence 5
No 124
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.29 E-value=18 Score=31.02 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=69.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
+.+-+.||+-.|..+|.+-+++|.+..-+++. ++.|+.++...+ ..+.|.|+.-|--...-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addDA---m~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDDA---MDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHHH---HHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 56678999999999999999999887666544 445666655554 34567776433222122234444332222
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEe
Q 008720 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASV 486 (556)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~ 486 (556)
.+.+ ....-+++.+.+. ..+ .+.+. ..+.|++.-|--..+.|+..+....
T Consensus 91 ~~~~----a~ekpe~~W~g~r---~~~--~Kn~v-kllLNl~lia~~aiPrGG~~~vtle 140 (214)
T COG5385 91 QDFF----ANEKPELTWNGPR---AIL--PKNRV-KLLLNLFLIAYGAIPRGGSLVVTLE 140 (214)
T ss_pred HHHH----hccCCcccccCCh---hhc--CcchH-HHHHHHHHHHcccCCCCCeeEEEee
Confidence 2222 2333444443221 112 33333 4567887777777787765544433
No 125
>PRK10963 hypothetical protein; Provisional
Probab=85.64 E-value=30 Score=32.01 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=77.8
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHH
Q 008720 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTD 216 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (556)
+..++....+.++...+....+.+++++... .+.+.++++.++++++++.+..-. ..... ......+....
T Consensus 68 ~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~~~~~~~-------~~~~~-~~~~~~~~~~~ 138 (223)
T PRK10963 68 IANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPDRWRLGA-------PSDFT-HLALSRQAFEP 138 (223)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecccccccC-------ccchh-hhhccHHHHHH
Confidence 3333444556778888888999999988886 679999999999988765321100 00000 00000111111
Q ss_pred H----hcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccc-cc
Q 008720 217 V----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR-DH 291 (556)
Q Consensus 217 v----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~-~~ 291 (556)
+ +....+..=........+-+ . . ..+..+.-.+| |..++. +|++.+.+..+..|+ ..
T Consensus 139 ~~~~~~~~~~~y~G~~~~~e~~~lf-~-~-~~~v~S~Allp--------------L~~~~~-~GlLalGS~D~~rF~~~m 200 (223)
T PRK10963 139 LRIQRLGQRQHYLGPLNGPELLLLL-P-E-AKAVGSVAMSL--------------LGSDGD-LGVLLFSSRDAQHYQQGQ 200 (223)
T ss_pred HHHHHhcCCCceeCCCChHHHHHhC-C-C-CCcCceeEEEe--------------ccCCCc-eEEEEEeCCChhhcCCCc
Confidence 1 22222222221111111101 1 1 11234444555 433333 788888887765555 56
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008720 292 ELELIDVVADQVAVALS 308 (556)
Q Consensus 292 e~~ll~~~a~~~~~al~ 308 (556)
...++..+|..++..+.
T Consensus 201 gT~fL~~la~vvs~~L~ 217 (223)
T PRK10963 201 GTQLLQHLALMLPELLE 217 (223)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77889999999887764
No 126
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=85.11 E-value=28 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHH
Q 008720 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 268 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a 310 (556)
+..++...|.+++.... ..|+++++-+++..+..+++.+.+-
T Consensus 120 I~G~g~RLGTLil~R~d-~~F~ddDLiL~E~~aTvvG~qil~~ 161 (261)
T COG4465 120 IYGGGERLGTLILWRLD-DKFTDDDLILVEYAATVVGMQILRE 161 (261)
T ss_pred EecCCeeeeeEEEEecC-CCCCccceehhhhhhHHHHHHHHHH
Confidence 55566667777776532 3899999999999999999888543
No 127
>PRK04158 transcriptional repressor CodY; Validated
Probab=82.43 E-value=43 Score=31.32 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHH
Q 008720 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 268 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a 310 (556)
+..++...|.+++.... .+++++++-+++..|..++..+.+.
T Consensus 117 I~ggGeRLGTLvl~r~~-~~f~~dDliL~EyaATVVgLEIlR~ 158 (256)
T PRK04158 117 IIGGGERLGTLILARFD-KEFTDDDLILAEYAATVVGMEILRE 158 (256)
T ss_pred EecCCeEEEEEEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888777543 4899999999999999999888543
No 128
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=77.08 E-value=32 Score=27.95 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=4.3
Q ss_pred HHHHHHhcC
Q 008720 39 LIYFVQKSA 47 (556)
Q Consensus 39 ~~~~~~~~~ 47 (556)
..+.++|++
T Consensus 19 ii~~vr~~~ 27 (115)
T PF10066_consen 19 IIRLVRKRK 27 (115)
T ss_pred HHHHHHHhh
Confidence 344455554
No 129
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.01 E-value=39 Score=30.45 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhhhHHHH----hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCC
Q 008720 123 KNRADELDREMGLILTQEET----GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT 187 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~ 187 (556)
++...+++++...+-.+.+. ..-+..+...+....+.++++.++-+...+.++.+.+.|-+..+.
T Consensus 51 R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~~ 119 (218)
T COG3159 51 RNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQDS 119 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEechh
Confidence 33444454444443333322 333556777788889999999999999999999999998776543
No 130
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=76.64 E-value=12 Score=28.35 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHH
Q 008720 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (556)
Q Consensus 351 i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (556)
+.|.+||-++.+.+.+..-.+...+.+ ++.+.+.....-+..--+-+ ..-....++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~--~~~~~~~~Rl~ALa~a~~ll----------~~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVE--EFAEAFSGRLQALARAHDLL----------SRSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHH--HHHHHHHHHHHHHHHHHHHH----------hcCCCCCccHHHHHHHHHHhc
Confidence 589999999999999888766543332 22222222222222211111 122345899999999988877
Q ss_pred HH
Q 008720 431 KP 432 (556)
Q Consensus 431 ~~ 432 (556)
..
T Consensus 70 ~~ 71 (83)
T PF07536_consen 70 GS 71 (83)
T ss_pred cC
Confidence 53
No 131
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=76.30 E-value=25 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD--LTPEQRVMIETVLKSSN 390 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~--~~~~~~~~l~~i~~~~~ 390 (556)
+.+++..+++.+.+.|.++...++.+.... .+++..+.++.+.+.+.
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~ 50 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLR 50 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Confidence 456888999999999999999988887542 23344555555544433
No 132
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=76.10 E-value=57 Score=29.05 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHHHHHHHHhhhcCCc
Q 008720 360 HAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKL 439 (556)
Q Consensus 360 ~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i 439 (556)
.+|.+.+++|.+...+++. +.++.|.+++.....-+ .|.|+--|--.- .+.++..+.-+-+..++. ..++
T Consensus 2 GAI~NGLELL~~~~~~~~~-~~~~LI~~Sa~~A~aRl----~F~RlAFGaag~-~~~i~~~e~~~~~~~~~~----~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDPEMR-PAMELIRESARNASARL----RFFRLAFGAAGS-GQQIDLGEARSVLRGYFA----GGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCccch-HHHHHHHHHHHHHHHHH----HHHHHHcCCCCC-CCCCCHHHHHHHHHHHHh----CCce
Confidence 4577778888776543332 37778888877776554 455554333222 346777665544444443 3444
Q ss_pred eEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecC
Q 008720 440 SMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (556)
Q Consensus 440 ~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG 519 (556)
++.... ..+. . ++. .-+++.|++-=+....+.|+.+.+......+. ..+.|.=+|
T Consensus 72 ~l~W~~--~~~~-~--~k~-~vklllnl~l~a~~alprGG~i~V~~~~~~~~-------------------~~~~v~a~G 126 (182)
T PF10090_consen 72 TLDWQV--ERDL-L--PKP-EVKLLLNLLLCAEDALPRGGEITVSIEGSEGD-------------------GGWRVRAEG 126 (182)
T ss_pred EEEccC--cccc-C--CHH-HHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC-------------------ceEEEEEec
Confidence 444433 3221 1 333 33888899988888888766555443333322 467777777
Q ss_pred CCC
Q 008720 520 CGV 522 (556)
Q Consensus 520 ~Gi 522 (556)
.-+
T Consensus 127 ~~~ 129 (182)
T PF10090_consen 127 PRA 129 (182)
T ss_pred ccc
Confidence 654
No 133
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=73.41 E-value=6.9 Score=42.40 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHhh-cCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 456 DEKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik-~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-..-+.+|+.+.+-||.+ -.+++--++.+....+. -.|+|.|||.|||-+..
T Consensus 50 ~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 50 YVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred cCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 334488999999999998 22333333333333222 37999999999996553
No 134
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=70.47 E-value=1.1e+02 Score=29.60 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHH
Q 008720 81 KAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMG 134 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~ 134 (556)
.+-.|.....-.++++.....++..|++-|.--.-..-.+...+++..++.+.+
T Consensus 68 ~~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~ 121 (284)
T PF12805_consen 68 GPEALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKAR 121 (284)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666667777777777778888777744443333344455555554433
No 135
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=68.87 E-value=72 Score=28.63 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=51.0
Q ss_pred CChhHHHHhcccCceEccCCCch-hhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcc
Q 008720 210 NLPIVTDVFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (556)
Q Consensus 210 ~~~~~~~v~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (556)
..+.+.+++++++...+.+..-. .+.+|. .......+.++.|+ ..+ |++.+..+.+|.|
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~--~lP~ntq~VlvqP~--------------g~~----G~lvlgs~~~R~f 179 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD--YLPENTQSVLVQPL--------------GQN----GVLVLGSNSPRAF 179 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh--hcCCCCcEEEEEEc--------------CCC----eEEEEeeCCcccc
Confidence 45678999999998888765322 222222 22234455666673 222 7888888999999
Q ss_pred ccchHHHHHHHHHHH
Q 008720 289 RDHELELIDVVADQV 303 (556)
Q Consensus 289 ~~~e~~ll~~~a~~~ 303 (556)
|+.|..++..+|+.+
T Consensus 180 t~~D~~Wi~~iA~Kl 194 (195)
T PF11152_consen 180 TKSDEAWIAGIADKL 194 (195)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
No 136
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=67.92 E-value=6.5 Score=28.04 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=32.5
Q ss_pred CCCCcceeeeeccccccCccc--------cCCCCCCcccceEEEEEeccCC
Q 008720 242 YVPPDIVAVRVPLLHLSNFQI--------NDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 242 ~~~~~~~~~~~pl~~~~~~~~--------~~~~~l~~~~~~~~vl~~~~~~ 284 (556)
+..+....+++.|.+.++-|. ..|++|++|.|.+.|.+....+
T Consensus 2 y~~~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~ 52 (66)
T PF07495_consen 2 YSNPENIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG 52 (66)
T ss_dssp TTCCTTEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS
T ss_pred CCCCCceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC
Confidence 456777888888877777654 3588999999999999988877
No 137
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=67.76 E-value=1.1e+02 Score=28.56 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008720 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 268 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~ 311 (556)
+..++.-.|.+++.... ..|+.+|+-+.+..|..++.-+.+..
T Consensus 114 I~g~g~RLGTl~l~r~~-~~F~~dDliLaEy~aTVVG~Eilr~~ 156 (251)
T TIGR02787 114 IYGGGERLGTLILARSD-KEFNDDDLVLAEYAATVVGMELLRAQ 156 (251)
T ss_pred eecCCceeEEEEEEEcC-CCCCcccchhhhhHhHHHHHHHHHHH
Confidence 44555567777776644 48999999999999999988875443
No 138
>COG5393 Predicted membrane protein [Function unknown]
Probab=67.55 E-value=63 Score=25.95 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=19.4
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 71 ISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (556)
Q Consensus 71 l~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~l~~ 107 (556)
+.+|.|| |-|.....+-.++++..++.+.++|.
T Consensus 71 Lvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~ 103 (131)
T COG5393 71 LVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWT 103 (131)
T ss_pred HHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667 34544455555566666666667777
No 139
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=67.46 E-value=1.8e+02 Score=31.19 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccC
Q 008720 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
....+.+..+...|..+.|-.--..+...++++.+++|+-+
T Consensus 329 ~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~ 369 (750)
T COG4251 329 HHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGG 369 (750)
T ss_pred HHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECC
Confidence 34455556666667777676777888899999999987754
No 140
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.47 E-value=39 Score=32.23 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHH
Q 008720 26 ILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIA 90 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~~~~~~~~~~ 90 (556)
..+-++|+.+|+...|...++.. ..-.+..+++.+++--..++|.+.-. |.++.|+.++..++
T Consensus 139 gAaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~--~l~sePf~~LT~iv 202 (299)
T PF05884_consen 139 GAAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHL--YLSSEPFIALTPIV 202 (299)
T ss_pred hHHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcc--cccCCcHHHHHHHH
Confidence 45568999999999997655432 22234445555555555555555554 66667776544443
No 141
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=60.12 E-value=76 Score=34.56 Aligned_cols=170 Identities=10% Similarity=0.095 Sum_probs=97.6
Q ss_pred HHHhHHHHHHHHH-HHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEE-E--e----ecccccc----cccc
Q 008720 140 EETGRHVRMLTHE-IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-Y--T----LNNQIQI----GSSV 207 (556)
Q Consensus 140 ~~~~~~l~~~~~~-l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~--~----~~~~~~~----~~~~ 207 (556)
.++...+...... ...-.+.+..+..+.-.+...+.+.+|.+.+++.+....... . . ....... ....
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (707)
T KOG3689|consen 163 RKRNQVLLDLADLMFEEQTDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKK 242 (707)
T ss_pred HHHHHHHhhhhhHHHHHhcchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHh
Confidence 3344444444444 233446666667777777778889999999888654432111 0 0 0000000 0111
Q ss_pred ccCChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc-CCCC
Q 008720 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGR 286 (556)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~ 286 (556)
.++....+.+-.+++...+++......|.........+-...+++|+. ...+..+|+..+.+ ..+.
T Consensus 243 ~ld~~l~g~va~t~~~~ni~~~~~~~~f~~q~d~~~~~~~~il~~pi~-------------~~~~~~igv~~~~nk~~g~ 309 (707)
T KOG3689|consen 243 LLDYGLRGYVASTGEGLNISNAIADPRFDKQVDEDGTGIRPILCIPIK-------------NKKGEVIGVQQLVNKEDGN 309 (707)
T ss_pred hhhhhhhheeecccCcCCCCCccccccccccccccccccceeEEEecc-------------cccCceecceeeeccccCC
Confidence 122333344555666666666666555554333222223335666642 22345566665544 4456
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 287 KWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (556)
Q Consensus 287 ~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~ 322 (556)
.|+..+..+.+..+...+..+.++..+......+.+
T Consensus 310 ~f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s~~r 345 (707)
T KOG3689|consen 310 PFSRNDEDLFEAFTIFCGLSIHNTHMYSKINKSEPR 345 (707)
T ss_pred ccccchHHHHHHHHHHHhhhhhhhhhHHHHhhhccc
Confidence 799999999999999999999999888876665533
No 142
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=58.90 E-value=1.9e+02 Score=29.15 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=20.4
Q ss_pred cCCccccccceeHHHHHHHHHHHHHHhh
Q 008720 407 DGSLELDNGPFNLQIVLREVIKLIKPVA 434 (556)
Q Consensus 407 ~~~~~l~~~~~~l~~ll~~~~~~~~~~~ 434 (556)
.+...+...+.+..++++.....++...
T Consensus 327 ~~~~rv~~~~~~~~~~l~~af~~Ir~yg 354 (371)
T PF10011_consen 327 DGRPRVIVPPPSFEDLLDDAFDQIRRYG 354 (371)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 3555666677888888888888887643
No 143
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=57.64 E-value=21 Score=24.81 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhh
Q 008720 26 ILIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSFIILCG 66 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~-~~~~~~~~~~~~~~fi~~~g 66 (556)
.+.++....+.+.+.|+.|.+ +..-++++..+++...+..|
T Consensus 5 S~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vAy~lli~~ 46 (58)
T PF10966_consen 5 SFGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVAYILLIVS 46 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 356777888888899988854 33346777776666544443
No 144
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=55.34 E-value=1.2e+02 Score=24.98 Aligned_cols=62 Identities=24% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHH
Q 008720 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKM 92 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~~~~~~~~~~~~ 92 (556)
.+-.|+.+++.++|...+.+. .+..+.+.+.++...|..-++.++.-..|+ +..+...++..
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~-~~~~~~l~~El 111 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPS-PFLWVALIFEL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 345577777777777665432 233445556677788899999998766554 33333334333
No 145
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=55.20 E-value=1.4e+02 Score=25.90 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHhhhhHHHHHHhc
Q 008720 29 ALAYFSIPVELIYFVQKSAF--FPYRWVLMQFGSFIILCGLTHFISLWTF 76 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~--~~~~~~~~~~~~fi~~~g~~hll~i~~~ 76 (556)
++....+.+..+++.++.+. .+.++....+..+ .++..+++.+..+
T Consensus 86 ~i~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~~~~~ 133 (169)
T PF07694_consen 86 FIIIILIGILAGLISRFFRRKSKKIKLLYLFLLSL--VISIISMLIILLL 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhccHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33444444444444333322 2334444323332 5555555555543
No 146
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=54.93 E-value=67 Score=33.45 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH-
Q 008720 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM- 104 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~- 104 (556)
...++.++.||+.++++.-+.|...-.|-+.+++++ .|..++++..+.+.| +.| ..+.+++|++....
T Consensus 184 ~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag~--sfti~q~l~a~~lGP-elP--------dIig~lvsl~i~~~f 252 (522)
T COG1620 184 RQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAGL--SFTIPQFLLANFLGP-ELP--------DIIGGLVSLGILALF 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhccc-ccH--------HHHHHHHHHHHHHHH
Confidence 456788999999999999988887778888888888 899999999996653 323 34455555554443
Q ss_pred HHHHhhh
Q 008720 105 LVHIIPD 111 (556)
Q Consensus 105 l~~~ip~ 111 (556)
+..+.|+
T Consensus 253 lk~~~PK 259 (522)
T COG1620 253 LKKWQPK 259 (522)
T ss_pred HHhhCCc
Confidence 3333443
No 147
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=54.89 E-value=16 Score=33.17 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=37.8
Q ss_pred eEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCC
Q 008720 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (556)
Q Consensus 452 ~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e 525 (556)
++.+||.+-.-+-.++++|+.++..-.+..--....++ -+++|.-.|.|||.-
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG---------------------k~iSvmg~GmGipS~ 70 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG---------------------KKISVMGHGMGIPSI 70 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC---------------------cEEEEEEecCCCccH
Confidence 45679999999999999999999854322211112222 479999999999964
No 148
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=53.32 E-value=1e+02 Score=28.73 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=47.5
Q ss_pred hHHHHHhhhHHHHHHH---HhHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhhhhHHHHH-HhcccchhhHHHHHHHH
Q 008720 17 LVRYQYISDILIALAY---FSIPVELIYFVQKSA--FFPYRWVLMQFGSFIILCGLTHFISL-WTFTVHSKAVAVVMTIA 90 (556)
Q Consensus 17 ~~~~~~~s~~~ia~a~---~~ip~~~~~~~~~~~--~~~~~~~~~~~~~fi~~~g~~hll~i-~~~~~~~~~~~~~~~~~ 90 (556)
.+|.|+.+|.....+- +.+|+.++++..... -.+..|.+.+|..+ ++|+.+.-..+ .++.-.+.+-.+++++.
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~-la~~~~~~F~i~f~~~~~aFwt~~as~l~ 181 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLA-LALLFLLRFLIQFTFGLFAFWTERASSLG 181 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccchhhHH
Confidence 5789999999998886 788999998876543 23456666555543 46664322111 22222222233566777
Q ss_pred HHHHHHHH
Q 008720 91 KMACAFVS 98 (556)
Q Consensus 91 ~~~~~~~s 98 (556)
+..-.+..
T Consensus 182 ~~~~~l~~ 189 (268)
T COG4587 182 KFWWLLYA 189 (268)
T ss_pred HHHHHHHH
Confidence 76444433
No 149
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.96 E-value=1.5e+02 Score=34.90 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHH
Q 008720 26 ILIALAYFSIPVELI 40 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~ 40 (556)
.+++++.|.+|+.++
T Consensus 77 ~LFGl~AYLLP~LL~ 91 (1355)
T PRK10263 77 FIFGVMAYTIPVIIV 91 (1355)
T ss_pred HHHhHHHHHHHHHHH
Confidence 355677888887664
No 150
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=46.54 E-value=1.9e+02 Score=31.45 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=32.2
Q ss_pred hHHHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHH
Q 008720 17 LVRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 17 ~~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~ 74 (556)
+..++.=++..-++|+..+|+.+.+.....+.-..+++.. .+...-+..+||++...
T Consensus 68 l~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~-lAl~~all~lsHll~~l 124 (616)
T PF10131_consen 68 LRNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWIL-LALSMALLALSHLLSTL 124 (616)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHhHHHHH
Confidence 3445566788888999999998755443222222333333 22233356677854443
No 151
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.43 E-value=3.1e+02 Score=27.00 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
-++.+++..+.+....+.++|.-+. +..+...++.+... .+++..+.++.+++...+....+.++-.+.
T Consensus 23 Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 23 YKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3444555556677888888888775 34444443443332 455667778888888888887777776554
No 152
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=43.41 E-value=1.1e+02 Score=21.61 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008720 50 PYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~hll~i~~~~ 77 (556)
+++-++..++.|+-+.|+.-.+.-..+-
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD 32 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFD 32 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4667788888888888877766666554
No 153
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.68 E-value=8.2 Score=36.08 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhHHHHH-hhhHH-------HHHHHHhHHHHHHHHHHhcCC
Q 008720 16 LLVRYQY-ISDIL-------IALAYFSIPVELIYFVQKSAF 48 (556)
Q Consensus 16 ~~~~~~~-~s~~~-------ia~a~~~ip~~~~~~~~~~~~ 48 (556)
+|+|+.+ .||.. -.+|.+.|-++++.|+.|||.
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566655 45532 223444555566666777774
No 154
>COG4377 Predicted membrane protein [Function unknown]
Probab=42.64 E-value=74 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.517 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHHHHHHH--HHHHhh
Q 008720 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGS--FIILCG 66 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~--fi~~~g 66 (556)
|+|...+|+...++.+|+-+.. |..+..|+ |.++.+
T Consensus 15 aiall~~pIG~i~w~krky~~~--l~v~g~GA~~Ffvf~q 52 (258)
T COG4377 15 AIALLAFPIGSIWWAKRKYQIN--LAVLGLGAVAFFVFSQ 52 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcch--HHHHhhhHHHHHHHHH
Confidence 6777788888888877665543 33333343 554443
No 155
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=42.62 E-value=18 Score=21.17 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.6
Q ss_pred EEEEEEecCCC
Q 008720 511 LRVQVNDSGCG 521 (556)
Q Consensus 511 v~i~V~DnG~G 521 (556)
..|+|.|+|+-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999973
No 156
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=40.77 E-value=27 Score=35.51 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=13.7
Q ss_pred EEEEEEecCCCCCCCCh
Q 008720 511 LRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~ 527 (556)
=.+.|.|+|+||..+.+
T Consensus 142 klLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 142 KLLHITDTGIGMTREDL 158 (785)
T ss_pred CeeeEecccCCccHHHH
Confidence 35889999999987654
No 157
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=40.75 E-value=2.5e+02 Score=28.03 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhhhHHHHHHh
Q 008720 26 ILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~fi~~~g~~hll~i~~ 75 (556)
+--..+|+.+++++++...++=. -+++++. ...+.+.+.|..|...+..
T Consensus 129 lG~~~~yi~~~lllV~~l~~~i~Ye~WR~~H-~lm~vvYilg~~H~~~l~~ 178 (438)
T COG4097 129 LGEWSAYIFIGLLLVWRLWLNIGYENWRIAH-RLMAVVYILGLLHSYGLLN 178 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 34456789999888875544432 3567777 3555677899999998874
No 158
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=40.24 E-value=2.6e+02 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=20.6
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHH
Q 008720 107 HIIPDLLSVKTRELFLKNRADELDREMGLILTQEE 141 (556)
Q Consensus 107 ~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (556)
.++......+.+.-..++....+++++++++++.+
T Consensus 142 ~~l~g~~gs~~~~~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 142 CFLTGLVGSYWRSASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred HHHccccCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 34444445544444455666777777777766554
No 159
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=40.08 E-value=1.8e+02 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008720 32 YFSIPVELIYFVQKSAFFPYRWVLMQFGS 60 (556)
Q Consensus 32 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 60 (556)
++.+|+.+.++.+|+++ .+|...+.|+
T Consensus 2 ~~~~pi~l~~~~rk~~~--~~~~~f~~Ga 28 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKK--ISWKPFILGA 28 (223)
T ss_pred eehHHHHHHHHHHHhcc--chHHHHHHHH
Confidence 46789988877777654 5555555555
No 160
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=40.00 E-value=1.6e+02 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=16.2
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcCCCc
Q 008720 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFP 50 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~ 50 (556)
.+|+.+|.+. +.+.+...++.+|.++-+
T Consensus 54 a~Hml~D~~a----l~lal~A~~~a~r~~~~~ 81 (296)
T COG1230 54 ALHMLSDALA----LLLALIAIKLARRPATKR 81 (296)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhcCCCCCC
Confidence 3678888653 344455556666665443
No 161
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=37.72 E-value=2e+02 Score=30.57 Aligned_cols=56 Identities=7% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008720 20 YQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 20 ~~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~ 77 (556)
+...+-....+.++.+|+.+.++..+.|...-.|.+.+++++ .++..+.+..+...
T Consensus 176 l~~~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~~~g 231 (522)
T PF02652_consen 176 LSSMVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVANFLG 231 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence 333444555677888999999998887776666777777776 66666666555443
No 162
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=47 Score=31.42 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008720 321 NQLMEQNVALDSARREAEKAIHA 343 (556)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~ 343 (556)
++|.+++++|++..+++++++++
T Consensus 67 ~eL~~rqeEL~Rke~ELdRREr~ 89 (313)
T KOG3088|consen 67 AELLKKQEELRRKEQELDRRERA 89 (313)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555544444444443
No 163
>PRK02975 putative common antigen polymerase; Provisional
Probab=36.88 E-value=2.7e+02 Score=27.55 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhh
Q 008720 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGL 67 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~ 67 (556)
.=..||.||..++++..|.. .-.|.+.+.+.. +||.
T Consensus 159 KRFFYFfIPAmLv~yFL~~t--k~~Wl~fL~~tv--~FG~ 194 (450)
T PRK02975 159 KRFFYFFIPAMLVVYFLRQD--SKAWLFFLVSTV--AFGL 194 (450)
T ss_pred HHHHHHHHHHHHHHHhhccc--HHHHHHHHHHHH--HHhc
Confidence 34569999999988776654 356776655554 5554
No 164
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=36.60 E-value=3.4e+02 Score=24.95 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=52.7
Q ss_pred hHHHHHhhhHHHHHHHHhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhhhHHHHHHhcccchh---------hHHHH
Q 008720 17 LVRYQYISDILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWTFTVHSK---------AVAVV 86 (556)
Q Consensus 17 ~~~~~~~s~~~ia~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~---------~~~~~ 86 (556)
+..-++.|..+..-+.|.|.+.++.++.++|. +........++=|+ .| ..|++.... -.|++ ++-.=
T Consensus 55 ~~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl~~Qi~D~~-~c-ll~~~g~yi-e~pa~l~~~~~~~~~~liP 131 (258)
T TIGR00799 55 LRIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFLSLQIMDFL-LC-LLTLLGSYI-ELPAYLKLARPRPGPSKIP 131 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHHHHHHHHHH-HH-HHHHhhhhh-cchhhhhhccccCccccch
Confidence 35568888888788889999999999887763 33444454444442 22 233333331 11100 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008720 87 MTIAKMACAFVSCITALMLVHIIPDL 112 (556)
Q Consensus 87 ~~~~~~~~~~~s~~~a~~l~~~ip~~ 112 (556)
..-....-..+++.||+.....+|..
T Consensus 132 FfclQifDF~Ls~Lta~ss~~ylp~y 157 (258)
T TIGR00799 132 LMTLQLLDFCLSILTLCSSYMEVPTY 157 (258)
T ss_pred HHHHHHHHHHHHHHHHhhhheechHH
Confidence 11223445567888888888877754
No 165
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=36.13 E-value=2e+02 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHHHHHHhhh
Q 008720 107 HIIPDLLSVKTRELFLKNRADELDREMGLILT 138 (556)
Q Consensus 107 ~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (556)
.+++.+..+...-....+....++++.+.+..
T Consensus 16 ~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 16 FLIKVLKKLKKTLDEVNKTIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444433222233334444444444433
No 166
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=36.02 E-value=74 Score=25.62 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 008720 54 VLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 54 ~~~~~~~fi~~~g~~hll~i~ 74 (556)
...+|+.-|+++-++|.+.|+
T Consensus 60 ~~iffavcI~l~~~s~~lLI~ 80 (118)
T PF10856_consen 60 LHIFFAVCILLICISAILLIF 80 (118)
T ss_pred eEEehHHHHHHHHHHHHhhee
Confidence 344466645555555555554
No 167
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.61 E-value=1.3e+02 Score=25.81 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHH
Q 008720 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFG 59 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 59 (556)
|+++.+.+-+.++.+.+.|.+-.+|-....++
T Consensus 23 i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~ 54 (149)
T PF11694_consen 23 IIILLLVLIFFFIKYLRNRLDTKYRDLSIIAL 54 (149)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 33334444444444455555545555444333
No 168
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=35.25 E-value=72 Score=20.27 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHH
Q 008720 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~hll~i~ 74 (556)
|+.....++++|.+++-..|++...
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666788888888888888877
No 169
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=34.21 E-value=1e+02 Score=28.59 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=38.2
Q ss_pred eEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCC
Q 008720 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (556)
Q Consensus 452 ~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~ 524 (556)
++.+||.+..++-. +++|+.+-+....-.......++ -.|+|.-+|+|.|.
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g---------------------~~v~v~StGIGgPS 71 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG---------------------KPVTVCSTGIGGPS 71 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC---------------------eEEEEEecCCCCch
Confidence 46799999998877 88999887765544444444433 46999999999986
No 170
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.24 E-value=2.2e+02 Score=21.64 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHH
Q 008720 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~ 74 (556)
++.|..|-+-+.+| ||++-.+++...+++.++++.-...-+.++
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~i~~l 47 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVPIRIL 47 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888766 444445666666566644433333333333
No 171
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=32.79 E-value=2.7e+02 Score=25.87 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred HHHhhhhHHHHHHhcccchhhHHHHHHHHHH
Q 008720 62 IILCGLTHFISLWTFTVHSKAVAVVMTIAKM 92 (556)
Q Consensus 62 i~~~g~~hll~i~~~~~~~~~~~~~~~~~~~ 92 (556)
+.++-.+-++..|-+..|+++-.....+.-.
T Consensus 80 ~~lsl~~~~~~L~Ff~vpS~~~r~l~~vl~~ 110 (232)
T PF10329_consen 80 TLLSLITNLFNLWFFGVPSKLERILNIVLAG 110 (232)
T ss_pred HHHHHHHHHHHHHheecCcHHHHHHHHHHHH
Confidence 3344445555556577777665443333333
No 172
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.67 E-value=2.1e+02 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=16.1
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHH
Q 008720 40 IYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~ 74 (556)
.|-+.|+.|-...|+. +++|+......-++.++
T Consensus 16 ~y~~trk~dp~l~~~m--l~a~l~~~~v~v~ig~l 48 (224)
T PF13829_consen 16 AYKMTRKEDPKLPWLM--LGAFLGPIAVFVLIGLL 48 (224)
T ss_pred HHHHHHHHCcchHHHH--HHHHHHHHHHHHHHHHH
Confidence 3445566554444444 45564444444444444
No 173
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=32.57 E-value=1.6e+02 Score=22.84 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHhhhHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhccc
Q 008720 21 QYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV 78 (556)
Q Consensus 21 ~~~s~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~~ 78 (556)
++++|.+.++--+.. +..|.++++....-...++|+..+++.+..|.-.++.+..
T Consensus 12 ~y~GDvL~~~~vy~~---~~~~~p~~~~~~~~~~~l~~~~~IE~~Ql~~~~~~~~~r~ 66 (91)
T PF10990_consen 12 PYLGDVLYVVLVYCL---VRFFFPRKSPKRLAIAALLFAFAIEFLQLYHAPWLLGIRS 66 (91)
T ss_pred hcccHHHHHHHHHHH---HHHHHcccchhHHHHHHHHHHHHHHHHHHHhHHHHHcccc
Confidence 578888886654432 2233344343345566677888888999888888875543
No 174
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=32.48 E-value=31 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.6
Q ss_pred EEEEEEecCCCCCCCCh
Q 008720 511 LRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~ 527 (556)
-.+++.|+|+||+.+++
T Consensus 102 ~tlti~DtGIGMTk~dL 118 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDL 118 (656)
T ss_pred ceEEEEecCCCcCHHHH
Confidence 57999999999997764
No 175
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=32.40 E-value=7e+02 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccH
Q 008720 88 TIAKMACAFVSCITALMLVHIIPDLLSVKTR 118 (556)
Q Consensus 88 ~~~~~~~~~~s~~~a~~l~~~ip~~l~~~~~ 118 (556)
++.-++..+.+-+.++++.+++-...++.+.
T Consensus 436 ~~~~flsGl~s~il~iGllP~fE~~F~~~T~ 466 (700)
T COG1480 436 AIFAFLSGLLSGILVLGLLPYFEALFGLLTT 466 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 3334444444555555666666556666553
No 176
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=31.64 E-value=4.1e+02 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=17.4
Q ss_pred hhhHHH--HHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhh
Q 008720 23 ISDILI--ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGL 67 (556)
Q Consensus 23 ~s~~~i--a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~ 67 (556)
..|..+ ++|.+.+-+.+.|++++- +..+|..++.+.|.
T Consensus 195 ~~d~~~l~~l~~~l~vivL~~~fr~~-------~~~llpL~~~l~sv 234 (727)
T COG1033 195 QKDMVVLLALAVILMVIVLYYVFRSV-------RRALLPLIIVLVSV 234 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHH
Confidence 344444 344555555555544332 23345655444443
No 177
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=31.02 E-value=1.4e+02 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcccch
Q 008720 54 VLMQFGSFIILCGLTHFISLWTFTVHS 80 (556)
Q Consensus 54 ~~~~~~~fi~~~g~~hll~i~~~~~~~ 80 (556)
.|.+|+++ +|..|-++.+++-..|.
T Consensus 477 ~fi~f~a~--LC~~ta~LAilthq~P~ 501 (539)
T PF04184_consen 477 FFILFTAG--LCSFTAILAILTHQFPE 501 (539)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhccH
Confidence 56678888 99999999999865553
No 178
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=30.99 E-value=3.8e+02 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHhcC
Q 008720 23 ISDILIALAYFSIPVELIYFVQKSA 47 (556)
Q Consensus 23 ~s~~~ia~a~~~ip~~~~~~~~~~~ 47 (556)
-.|.-..+.++.-++...|.++|.|
T Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~~~~ 125 (194)
T PF07698_consen 101 GFDFEFFLYSLVSGIVAIFSVRRIR 125 (194)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777788888888877654
No 179
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.69 E-value=2.8e+02 Score=22.12 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008720 89 IAKMACAFVSCITALMLVHIIPDLLSVKT 117 (556)
Q Consensus 89 ~~~~~~~~~s~~~a~~l~~~ip~~l~~~~ 117 (556)
++-++-++++++..+....++-....-.+
T Consensus 51 lImpI~~~vvli~lvvfm~~~~g~~r~~~ 79 (117)
T COG3462 51 LIMPIFWAVVLIFLVVFMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45555555555555544444444444444
No 180
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=30.53 E-value=2.2e+02 Score=20.83 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q 008720 95 AFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEETGRHV 146 (556)
Q Consensus 95 ~~~s~~~a~~l~~~ip~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 146 (556)
.++-++++++.|. ++..+++++.+.++++.+...+
T Consensus 31 tPlfiisa~lSwk-----------------LaK~ie~~ere~K~k~Kr~~~i 65 (74)
T PF15086_consen 31 TPLFIISAVLSWK-----------------LAKAIEKEEREKKKKAKRQANI 65 (74)
T ss_pred hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666 4555555555555555554433
No 181
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.10 E-value=5.2e+02 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008720 33 FSIPVELIYFVQKSAFFPYRWVLMQFGS 60 (556)
Q Consensus 33 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 60 (556)
+.-.+..+||....-+.|. |..+.||.
T Consensus 27 ~la~~s~~~a~~~~~~~~~-~~ai~~gl 53 (301)
T PF14362_consen 27 LLAGLSGGYALYTVFGGPV-WAAIPFGL 53 (301)
T ss_pred HHHHHHHHHHHHHHhccch-HHHHHHHH
Confidence 3336667777665543322 55554554
No 182
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=29.98 E-value=2.3e+02 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHhcCCCchhHHHHHH
Q 008720 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQF 58 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~~~~~~~~~~~~~~~ 58 (556)
-+++|.||.+.++|-...- +.|.|+.=+|
T Consensus 158 ~l~~~~ip~~~gff~l~~~-i~~~~~~~i~ 186 (952)
T TIGR02921 158 LLAFFAIPAAAGFFELLEE-IEFEHLGDIF 186 (952)
T ss_pred HHHHHhhhHHhHHHHHHHH-HHHHhHHHHH
Confidence 3578999999998865442 2455554333
No 183
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=29.91 E-value=3.4e+02 Score=22.93 Aligned_cols=47 Identities=17% Similarity=0.426 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcc
Q 008720 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (556)
Q Consensus 28 ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~ 77 (556)
|+++|+.+++..+....+. -+.+....+-.+++..|..+++.+-.+.
T Consensus 3 i~lg~~~~G~~fG~la~~~---G~~~~~~~~mS~lvfaGa~Qf~~~~l~~ 49 (143)
T PF03591_consen 3 IALGYIPFGIAFGVLAVEA---GFSWWEAILMSLLVFAGAAQFVAVGLLA 49 (143)
T ss_pred chHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4679999999999866554 4566666666677799999999987654
No 184
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=29.15 E-value=64 Score=17.53 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=12.6
Q ss_pred hHHHHHHHHhHHHHHHH
Q 008720 25 DILIALAYFSIPVELIY 41 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~ 41 (556)
+.+|+++.++|...+.|
T Consensus 5 EvlIa~~i~~i~~~g~~ 21 (22)
T PF13633_consen 5 EVLIAIAILGILALGAY 21 (22)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 45788888888877654
No 185
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=28.29 E-value=3.9e+02 Score=23.65 Aligned_cols=55 Identities=15% Similarity=-0.007 Sum_probs=32.1
Q ss_pred HHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHH
Q 008720 60 SFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTREL 120 (556)
Q Consensus 60 ~fi~~~g~~hll~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~l~~~ip~~l~~~~~~~ 120 (556)
++.++++-+-++.-+|+|..++ .+.-|+|-++..+++++...+.-.--.-++-+.
T Consensus 98 gl~~l~~q~~~l~rLTf~e~sW------DvMEPVTYfv~~~~~i~~y~yfl~t~re~sy~~ 152 (180)
T PF04678_consen 98 GLALLVVQFGILARLTFWEYSW------DVMEPVTYFVGYGTSILGYAYFLYTRREYSYES 152 (180)
T ss_pred HHHHHHHHHHHHHHHHhhcccc------chhhhHHHHHhHHHHHHHHHHHHHhCCCCChHH
Confidence 3333444444444556665433 567899999999998876554444444444333
No 186
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.14 E-value=5.3e+02 Score=24.56 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHH
Q 008720 123 KNRADELDREMGLILTQEETGRHVRM 148 (556)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~ 148 (556)
.+..++|+++..+++.+....+.+.+
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~l~~ 100 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQLEA 100 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566665555555554444433
No 187
>COG4420 Predicted membrane protein [Function unknown]
Probab=27.94 E-value=4.4e+02 Score=23.49 Aligned_cols=13 Identities=0% Similarity=-0.020 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHH
Q 008720 80 SKAVAVVMTIAKM 92 (556)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (556)
.||+.|+..++..
T Consensus 86 pyPFi~LnLllS~ 98 (191)
T COG4420 86 PYPFILLNLLLST 98 (191)
T ss_pred CccHHHHHHHHHH
Confidence 4677766555544
No 188
>PF13974 YebO: YebO-like protein
Probab=27.33 E-value=2.4e+02 Score=21.17 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhcc
Q 008720 100 ITALMLVHIIPDLLS 114 (556)
Q Consensus 100 ~~a~~l~~~ip~~l~ 114 (556)
..++.+|+|+-.+..
T Consensus 9 lv~livWFFVnRaSv 23 (80)
T PF13974_consen 9 LVGLIVWFFVNRASV 23 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456665555443
No 189
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=27.31 E-value=3.9e+02 Score=22.76 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=27.1
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHH-HhcCCCchhHHHHHHHHH
Q 008720 20 YQYISDILIALAYFSIPVELIYFV-QKSAFFPYRWVLMQFGSF 61 (556)
Q Consensus 20 ~~~~s~~~ia~a~~~ip~~~~~~~-~~~~~~~~~~~~~~~~~f 61 (556)
.....+.+++++++...+.+.+.. +|++.+|...+.++....
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v 96 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISV 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 446778888888877777777754 444556665555554443
No 190
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=27.23 E-value=1.1e+02 Score=28.73 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHH
Q 008720 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~hll~i~ 74 (556)
-..|.+-++|.++++.|+.-++.++
T Consensus 181 ~~tW~lR~~G~llmf~G~~~~~~~l 205 (248)
T PF07787_consen 181 TLTWILRFIGWLLMFIGFFLLFSPL 205 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777677777777777776665
No 191
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=27.14 E-value=5.2e+02 Score=25.42 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH-HHHHhhhhHHHHHHhcc---cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008720 38 ELIYFVQKSAFFPYRWVLMQFGS-FIILCGLTHFISLWTFT---VHSKAVAVVMTIAKMACAFV-SCITALMLVHI 108 (556)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~-fi~~~g~~hll~i~~~~---~~~~~~~~~~~~~~~~~~~~-s~~~a~~l~~~ 108 (556)
...|+..+++-.||-++..+.+. ++...|...+.++-.+| ..+.|.+|=.+.+..-++.. ++++.+....+
T Consensus 72 sa~yvFn~~~ykpfar~a~~~s~~~ii~a~lsIlpDiGR~~lyp~f~s~~~fn~~sv~~y~al~~~iY~~vl~~~~ 147 (401)
T COG5557 72 SAVYVFNRGQYKPFARPALLASLFGIILAGLSILPDIGRYWLYPYFYSPGHFNVNSVLFYTALCMTIYIGVLALEF 147 (401)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHhhcccccchhccccccCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666688888877766 66677777777876543 23445555455555555554 66666665553
No 192
>TIGR00346 azlC 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD.
Probab=26.68 E-value=2.9e+02 Score=25.48 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhc
Q 008720 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTF 76 (556)
Q Consensus 26 ~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~ 76 (556)
.=|+++|+.+++..+....+. . +.+....+-.+++..|..+++.+-.+
T Consensus 10 lPi~lgyip~G~afGila~~~-G--ls~~~a~lmS~~vfAGaaQf~~v~ll 57 (221)
T TIGR00346 10 IPILAGFLFLGIAYGILMVQL-G--FDYKYPLFMSLFIYAGSVEFVAATLL 57 (221)
T ss_pred ChHHHHHHHHHHHHHHHHHHC-C--CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 447889999999999877555 2 44444445555678999998888654
No 193
>PRK05415 hypothetical protein; Provisional
Probab=26.63 E-value=6.4e+02 Score=25.02 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=12.4
Q ss_pred HHHccCChHHHHHHHHHHHHhhhCC
Q 008720 152 EIRSTLDRHTILKTTLVELGRTLGL 176 (556)
Q Consensus 152 ~l~~~~~~~~il~~~~~~l~~~l~~ 176 (556)
.+..+.+..+ .+..|+.+.+.++.
T Consensus 140 ~l~~~~~~~~-a~~~~~~l~~~~~~ 163 (341)
T PRK05415 140 ALLHSHDVGE-ARAFCEKLAKQAGI 163 (341)
T ss_pred HHHhcCChhh-HHHHHHHHHHHhCC
Confidence 3333444444 55666666666443
No 194
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=26.17 E-value=4.3e+02 Score=22.84 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHhh
Q 008720 30 LAYFSIPVELIYFVQKSAF----FPYRWVLMQFGSFIILCG 66 (556)
Q Consensus 30 ~a~~~ip~~~~~~~~~~~~----~~~~~~~~~~~~fi~~~g 66 (556)
++....++..+++.+|.+. ..+.|.....+++...++
T Consensus 80 i~~~~~g~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (169)
T PF07155_consen 80 ISKGLMGFIAGLIFRKKKKKKKSKSFNILAIILGALIMVIG 120 (169)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 4455556667777666532 124555544444444443
No 195
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.57 E-value=3.8e+02 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 303 VAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNH 353 (556)
Q Consensus 303 ~~~al~~a~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~H 353 (556)
++..+.+..+...+......+++.+.+++...+++++.+...++|...++-
T Consensus 24 lG~~~l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 24 LGSGPLQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hcchhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555566677777777777777777777777777766654
No 196
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=24.84 E-value=3.6e+02 Score=21.47 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 008720 82 AVAVVMTIAKMACAF 96 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~ 96 (556)
.+.-+.|+++.+-|+
T Consensus 62 ~Ia~ilGlGRGlDaL 76 (121)
T COG2456 62 EIAEILGLGRGLDAL 76 (121)
T ss_pred HHHHHhccccccchh
Confidence 334445555555554
No 197
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=24.56 E-value=7.1e+02 Score=24.81 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=41.3
Q ss_pred CChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCC-CcccceEEEEEec
Q 008720 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPEL-PAKSYAVMVLMLP 281 (556)
Q Consensus 210 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l-~~~~~~~~vl~~~ 281 (556)
........++.....++.........+..... +++.+.+.+.|++++++.++.-... .+....+.++.+.
T Consensus 26 ~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT 96 (360)
T COG3437 26 NLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLT 96 (360)
T ss_pred HHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccHHHHHHHHHhcCCcccccceEEEe
Confidence 33455666766655555444444444432222 3888999999999999887754433 4555544444443
No 198
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.27 E-value=5.4e+02 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Q 008720 90 AKMACAFVSCITALMLVHIIPDLLSVKT 117 (556)
Q Consensus 90 ~~~~~~~~s~~~a~~l~~~ip~~l~~~~ 117 (556)
+-.+.+++.+..++.+..++|..+...-
T Consensus 151 ~~~~~~~~~w~~~~~~~~~lp~~inp~l 178 (206)
T PF06570_consen 151 LISVLAMVLWIVIFVLTSFLPPVINPVL 178 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCcCC
Confidence 3344444555555555566777765443
No 199
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=23.61 E-value=2.7e+02 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhccc
Q 008720 54 VLMQFGSFIILCGLTHFISLWTFTV 78 (556)
Q Consensus 54 ~~~~~~~fi~~~g~~hll~i~~~~~ 78 (556)
+|++||+.+++.-...++.++.|-.
T Consensus 14 wFLF~~AIFiAItIlYILLalL~Ev 38 (117)
T PF07234_consen 14 WFLFFGAIFIAITILYILLALLFEV 38 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666544554444444444443
No 200
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=23.56 E-value=3.1e+02 Score=30.78 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHhHHHHHHHH-HHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHh-cccchhhHHHHHHHHHHHHHHHHHH
Q 008720 23 ISDILIALAYFSIPVELIYF-VQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT-FTVHSKAVAVVMTIAKMACAFVSCI 100 (556)
Q Consensus 23 ~s~~~ia~a~~~ip~~~~~~-~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~-~~~~~~~~~~~~~~~~~~~~~~s~~ 100 (556)
.+|..|-...+.+-+...|+ .++-+.+..|+++++.|.|++++-+.--..++. ++. ++..+..++.++.+.+.+-
T Consensus 59 ~~Dv~iv~isy~vmflYis~~l~~l~~v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~---~~t~I~eViPFLvLaIGVD 135 (886)
T TIGR00920 59 SSDVIVMTITRCIAVLYIYYQFCNLRQLGSKYILGIAGLFTIFSSFVFSTAVIHFLGS---ELTGLNEALPFFLLLIDLS 135 (886)
T ss_pred ccceEEeeHHHHHHHHHHHHHhCCccccCcchhhhhHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHhHHHhhhchh
Confidence 45554433333333333333 223334568889888888888777666666653 233 3344456666666666666
Q ss_pred HHHHHHH
Q 008720 101 TALMLVH 107 (556)
Q Consensus 101 ~a~~l~~ 107 (556)
+++.+.-
T Consensus 136 nifiLa~ 142 (886)
T TIGR00920 136 KASALAK 142 (886)
T ss_pred hHHHHHh
Confidence 6666544
No 201
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.42 E-value=5.2e+02 Score=22.88 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhH
Q 008720 56 MQFGSFIILCGLTH 69 (556)
Q Consensus 56 ~~~~~fi~~~g~~h 69 (556)
...|..++++|++-
T Consensus 12 iilgilli~~gI~~ 25 (191)
T PF04156_consen 12 IILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444455444
No 202
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=23.29 E-value=5.3e+02 Score=22.88 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008720 25 DILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM 104 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~ 104 (556)
...|+.|-+..++.+.. .++.|......+++.|.++=|..|=.++..-.. +..+..+..-...++...+..+.
T Consensus 82 E~~Ia~Sv~~~G~ll~~----~~r~~~~~~~~l~a~falfHG~ahG~e~~~~~~---~~~y~~G~~~at~~l~~~g~~~~ 154 (180)
T PF04955_consen 82 ETGIAASVLVLGLLLAF----GRRLPLWLALLLVALFALFHGYAHGAEMPGAAS---GLLYAAGFVLATALLHAAGLALG 154 (180)
T ss_pred HHHHHHHHHHHHHHHHh----hhccchhHHHHHHHHHHHHHhhhhHhhhccccc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777666655542 222466677778888988999999998863222 23345666655555555444443
No 203
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=23.01 E-value=2.7e+02 Score=20.84 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhcHHH
Q 008720 343 ARNDFRAVMNHEMRTLMH 360 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~ 360 (556)
...+|...|.+|+++|..
T Consensus 29 ~~~~F~~AL~DDLNTp~A 46 (81)
T cd07955 29 LVARLREALADDLDTPKA 46 (81)
T ss_pred HHHHHHHHHHhhCChHHH
Confidence 457899999999999964
No 204
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=22.71 E-value=5.3e+02 Score=22.71 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=46.4
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHhcC----CC-----c-hhHHHHHHHHHHHHhhhhHHHHHHhcccchhhHHHHHH
Q 008720 19 RYQYISDILIALAYFSIPVELIYFVQKSA----FF-----P-YRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMT 88 (556)
Q Consensus 19 ~~~~~s~~~ia~a~~~ip~~~~~~~~~~~----~~-----~-~~~~~~~~~~fi~~~g~~hll~i~~~~~~~~~~~~~~~ 88 (556)
..|..+|.+.-+.|+.+.+.+.|.-.|++ +. + ..++..+.+..+...+++.++.-.+ +. +..++
T Consensus 42 ~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~--~~~~~-- 115 (181)
T PF04973_consen 42 QAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLT--DS--PFPWL-- 115 (181)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CC--chHHH--
Confidence 45778999999999999988888877533 12 1 2344444444545555555555442 11 33322
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008720 89 IAKMACAFVSCITALMLVH 107 (556)
Q Consensus 89 ~~~~~~~~~s~~~a~~l~~ 107 (556)
..++...|+.+.+.+.+
T Consensus 116 --Da~~~~~siva~~l~~~ 132 (181)
T PF04973_consen 116 --DALTTVLSIVAQWLMAR 132 (181)
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 44455555555555444
No 205
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.61 E-value=5.4e+02 Score=24.77 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008720 312 ILEDSMRARNQLMEQ 326 (556)
Q Consensus 312 ~~~~~~~~~~~l~~~ 326 (556)
++++..+.++++.+.
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 206
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=22.54 E-value=3.1e+02 Score=21.23 Aligned_cols=32 Identities=22% Similarity=0.609 Sum_probs=21.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHh---cC-CCchhHHHH
Q 008720 25 DILIALAYFSIPVELIYFVQK---SA-FFPYRWVLM 56 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~---~~-~~~~~~~~~ 56 (556)
.++.+++.|..+....||..+ +| .+|++|-++
T Consensus 27 Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~L 62 (94)
T PF15110_consen 27 AFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNIL 62 (94)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhH
Confidence 467788889888888887553 22 356777664
No 207
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=22.23 E-value=1e+02 Score=17.53 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=14.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHhc
Q 008720 25 DILIALAYFSIPVELIYFVQKS 46 (556)
Q Consensus 25 ~~~ia~a~~~ip~~~~~~~~~~ 46 (556)
|.-..++.+.+++.++.+++|+
T Consensus 3 DsGST~~Ll~~~l~~l~~~rRr 24 (26)
T TIGR03778 3 DSGSTLALLGLGLLGLLGLRRR 24 (26)
T ss_pred CchhHHHHHHHHHHHHHHHhhc
Confidence 4445566777777777776665
No 208
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.52 E-value=3e+02 Score=19.38 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHh
Q 008720 50 PYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 50 ~~~~~~~~~~~fi~~~g~~hll~i~~ 75 (556)
.......++|.+.+..|..++...+.
T Consensus 20 ~~~~~~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 20 SLAALAIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677888888999999988876
No 209
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=21.41 E-value=3.9e+02 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=25.6
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhhhHHHHHHh
Q 008720 40 IYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT 75 (556)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~fi~~~g~~hll~i~~ 75 (556)
-+++.++++ |+++-..+...|-..|.....+.+.+
T Consensus 184 ~~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy 218 (512)
T KOG2493|consen 184 DHSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVY 218 (512)
T ss_pred HHHHHHhcC-chhhchhhcchhhhhhhhheeeeEEe
Confidence 344455667 89998888888877887777776664
No 210
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=21.26 E-value=7.8e+02 Score=24.05 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhh
Q 008720 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRT 173 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~ 173 (556)
--..+..+.+.++.+....+.++.+.++..+=
T Consensus 138 lP~aLdlivr~l~aG~~l~dAl~~~~~e~~~P 169 (309)
T COG4965 138 LPEALDLIVRALRAGAPLPDALRLAAKETPEP 169 (309)
T ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHhhCCCc
Confidence 34567778888999988888777777665433
No 211
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=20.80 E-value=6e+02 Score=25.63 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=13.1
Q ss_pred HHhhhHHHHHHHHhHHHHHHH
Q 008720 21 QYISDILIALAYFSIPVELIY 41 (556)
Q Consensus 21 ~~~s~~~ia~a~~~ip~~~~~ 41 (556)
+-+..+.-....+.+|+....
T Consensus 249 lsl~~l~~~~~~ll~P~la~R 269 (395)
T COG2807 249 LSLMQLAQLPTALLIPLLARR 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677778876554
No 212
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=20.78 E-value=3.5e+02 Score=22.94 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHHHHHH
Q 008720 29 ALAYFSIPVELIYFVQ 44 (556)
Q Consensus 29 a~a~~~ip~~~~~~~~ 44 (556)
.++.+.+.+.++.+..
T Consensus 18 ~l~~~~~~~~~~~~~~ 33 (176)
T PF13567_consen 18 LLALLLLLLLLLLFFR 33 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 213
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=20.47 E-value=4.6e+02 Score=21.13 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 008720 126 ADELDREMGL 135 (556)
Q Consensus 126 ~~~l~~~~~~ 135 (556)
.+++++..+.
T Consensus 108 ~~~l~~d~~~ 117 (121)
T PF07332_consen 108 IAELKEDIAA 117 (121)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 214
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.07 E-value=6e+02 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=10.1
Q ss_pred hhHHHHHHHHhHHHHHHHH
Q 008720 24 SDILIALAYFSIPVELIYF 42 (556)
Q Consensus 24 s~~~ia~a~~~ip~~~~~~ 42 (556)
.|++.|+-||.+..=..|.
T Consensus 163 ~~f~Laii~fllftPcsyV 181 (313)
T KOG3088|consen 163 TIFGLAIIWFLLFTPCSYV 181 (313)
T ss_pred hhhHHHHHHHHHhCCceee
Confidence 3555566666665444443
Done!