Query 008720
Match_columns 556
No_of_seqs 352 out of 3634
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 4.5E-30 1.5E-34 245.5 22.7 200 337-556 13-220 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 9.5E-28 3.3E-32 230.7 21.5 202 329-556 25-228 (268)
3 3a0r_A Sensor protein; four he 99.9 6E-26 2.1E-30 226.9 18.4 186 342-556 130-317 (349)
4 1gkz_A [3-methyl-2-oxobutanoat 99.9 2.8E-26 9.6E-31 231.9 14.4 195 340-556 117-345 (388)
5 3jz3_A Sensor protein QSEC; he 99.9 5.4E-27 1.9E-31 218.6 7.6 187 344-556 2-189 (222)
6 3d36_A Sporulation kinase B; G 99.9 2.8E-25 9.7E-30 210.2 13.4 186 341-556 11-197 (244)
7 2btz_A Pyruvate dehydrogenase 99.9 2.5E-25 8.7E-30 225.3 13.2 189 346-556 97-322 (394)
8 2e0a_A Pyruvate dehydrogenase 99.9 9.4E-25 3.2E-29 221.0 16.8 188 346-556 97-322 (394)
9 2q8g_A [pyruvate dehydrogenase 99.9 9.6E-25 3.3E-29 221.9 15.7 190 344-556 106-335 (407)
10 1y8o_A [pyruvate dehydrogenase 99.9 7.1E-24 2.4E-28 216.0 14.5 190 344-556 118-346 (419)
11 4fpp_A Phosphotransferase; fou 99.9 6.3E-24 2.1E-28 200.6 13.0 171 347-556 49-221 (247)
12 1b3q_A Protein (chemotaxis pro 99.8 2.2E-20 7.5E-25 187.2 11.1 172 343-556 9-220 (379)
13 3ehh_A Sensor kinase (YOCF pro 99.8 1.2E-19 3.9E-24 168.4 14.8 163 342-556 26-190 (218)
14 3a0y_A Sensor protein; ATP-LID 99.7 6.6E-18 2.3E-22 146.8 11.6 118 413-556 2-120 (152)
15 1id0_A PHOQ histidine kinase; 99.7 9.5E-18 3.3E-22 145.9 12.4 116 415-556 2-117 (152)
16 1ysr_A Sensor-type histidine k 99.7 1.2E-17 4.3E-22 144.8 10.8 118 413-556 4-121 (150)
17 1bxd_A ENVZ(290-450), protein 99.7 5.8E-17 2E-21 142.4 13.4 119 411-556 4-122 (161)
18 1r62_A Nitrogen regulation pro 99.7 1.3E-17 4.4E-22 146.4 7.4 129 411-556 2-132 (160)
19 3sl2_A Sensor histidine kinase 99.7 1.2E-16 4E-21 142.8 12.0 121 416-556 2-124 (177)
20 1i58_A Chemotaxis protein CHEA 99.7 3.2E-17 1.1E-21 148.2 3.9 123 414-556 2-161 (189)
21 3p01_A Two-component response 99.6 4.9E-14 1.7E-18 126.5 15.2 172 125-312 11-182 (184)
22 3ehg_A Sensor kinase (YOCF pro 99.5 3.2E-14 1.1E-18 119.4 7.7 99 417-556 2-100 (128)
23 3e0y_A Conserved domain protei 99.5 2.2E-13 7.5E-18 121.5 10.3 169 135-317 6-174 (181)
24 3trc_A Phosphoenolpyruvate-pro 99.4 1.6E-12 5.5E-17 114.7 15.2 164 140-317 4-169 (171)
25 2e4s_A CAMP and CAMP-inhibited 99.4 7.6E-13 2.6E-17 119.0 12.0 171 135-319 4-186 (189)
26 3k2n_A Sigma-54-dependent tran 99.4 1.5E-12 5E-17 115.8 12.0 165 140-318 2-175 (177)
27 2zmf_A CAMP and CAMP-inhibited 99.4 2E-12 6.7E-17 116.1 12.8 165 140-318 9-185 (189)
28 4glq_A Methyl-accepting chemot 99.4 2.9E-12 9.8E-17 112.9 12.1 155 149-317 2-162 (171)
29 3zxo_A Redox sensor histidine 99.4 7.7E-13 2.7E-17 111.1 7.1 97 415-556 3-99 (129)
30 3ci6_A Phosphoenolpyruvate-pro 99.3 1.9E-11 6.3E-16 107.4 14.3 163 139-315 5-169 (171)
31 3o5y_A Sensor protein; GAF dom 99.3 5.8E-12 2E-16 110.1 10.5 155 155-325 2-159 (165)
32 1th8_A Anti-sigma F factor; SP 99.3 1.4E-12 4.7E-17 112.0 6.2 77 455-556 35-115 (145)
33 3oov_A Methyl-accepting chemot 99.3 5.8E-11 2E-15 104.2 14.8 158 144-315 2-168 (169)
34 2lb5_A Sensor histidine kinase 99.3 1.7E-11 5.9E-16 112.1 10.5 169 133-315 5-203 (208)
35 3zxq_A Hypoxia sensor histidin 99.2 1.1E-11 3.8E-16 103.1 7.1 94 418-556 2-95 (124)
36 2vjw_A GAF-B, GAF family prote 99.2 2.2E-10 7.5E-15 98.4 12.8 134 158-316 1-141 (149)
37 1ykd_A Adenylate cyclase; GAF 99.2 3.7E-10 1.3E-14 114.3 16.4 170 136-318 191-385 (398)
38 1mu5_A Type II DNA topoisomera 99.2 1.7E-11 5.7E-16 124.5 5.3 86 453-555 26-117 (471)
39 2zbk_B Type 2 DNA topoisomeras 99.2 1.6E-11 5.4E-16 126.1 5.0 83 456-555 28-116 (530)
40 3ibj_A CGMP-dependent 3',5'-cy 99.1 1E-09 3.6E-14 118.9 17.7 169 139-323 176-351 (691)
41 3dba_A CONE CGMP-specific 3',5 99.1 1.1E-10 3.9E-15 103.9 8.2 153 141-307 4-171 (180)
42 3mmh_A FRMSR, methionine-R-sul 99.1 3.1E-09 1E-13 92.4 16.8 146 142-307 15-160 (167)
43 2qyb_A Membrane protein, putat 99.1 2.7E-10 9.1E-15 101.5 10.3 158 144-316 3-165 (181)
44 1mc0_A 3',5'-cyclic nucleotide 99.1 2E-09 6.7E-14 107.6 17.7 165 138-318 175-346 (368)
45 1mc0_A 3',5'-cyclic nucleotide 99.1 1.6E-09 5.4E-14 108.3 16.6 160 143-318 13-175 (368)
46 2w3g_A DOSS, two component sen 99.1 6.8E-10 2.3E-14 95.5 10.3 145 155-315 3-151 (153)
47 3hcy_A Putative two-component 99.0 4.1E-10 1.4E-14 97.0 7.8 143 156-314 1-144 (151)
48 1ykd_A Adenylate cyclase; GAF 99.0 1.7E-08 5.9E-13 101.9 19.6 166 140-319 5-194 (398)
49 1vhm_A Protein YEBR; structura 99.0 1.1E-08 3.8E-13 91.2 15.0 151 140-312 25-176 (195)
50 3ibj_A CGMP-dependent 3',5'-cy 99.0 7.3E-09 2.5E-13 112.3 16.0 160 141-317 12-174 (691)
51 3cit_A Sensor histidine kinase 98.9 1.8E-08 6.3E-13 84.7 14.1 146 138-319 9-157 (160)
52 2q2e_B Type 2 DNA topoisomeras 98.9 1.4E-10 4.7E-15 120.7 1.1 84 453-555 31-121 (621)
53 2k2n_A Sensor protein, SYB-CPH 98.9 1.7E-08 5.7E-13 89.0 12.5 141 159-313 1-171 (172)
54 2ool_A Sensor protein; bacteri 98.9 2.4E-08 8E-13 96.4 14.1 160 141-314 144-332 (337)
55 3nhq_A Bacteriophytochrome; ph 98.9 1.1E-07 3.7E-12 96.7 19.1 161 141-315 122-311 (505)
56 4e04_A Bacteriophytochrome (li 98.9 3.8E-08 1.3E-12 93.8 14.7 154 142-309 132-314 (327)
57 3s7o_A Bacteriophytochrome; bi 98.8 3.7E-08 1.3E-12 94.1 13.5 157 141-311 149-334 (343)
58 3zq5_A Phytochrome-like protei 98.8 1.4E-07 4.9E-12 96.1 18.6 161 142-316 136-325 (520)
59 1f5m_A GAF; CGMP binding, sign 98.8 1.8E-07 6E-12 82.7 14.7 145 144-307 27-177 (180)
60 3rfb_A Putative uncharacterize 98.7 1.4E-07 4.7E-12 81.6 13.0 142 144-307 18-160 (171)
61 3ksh_A Putative uncharacterize 98.7 2.5E-07 8.5E-12 79.2 12.7 141 145-307 18-159 (160)
62 3eea_A GAF domain/HD domain pr 98.6 2.3E-07 7.9E-12 73.5 9.2 147 153-314 8-161 (162)
63 1b63_A MUTL; DNA mismatch repa 98.5 7.3E-08 2.5E-12 93.7 6.1 74 459-554 24-104 (333)
64 3bjc_A CGMP-specific 3',5'-cyc 98.5 1.5E-08 5E-13 112.6 0.0 171 137-320 146-330 (878)
65 3na3_A DNA mismatch repair pro 98.4 1.5E-07 5.2E-12 91.0 5.5 61 459-541 28-88 (348)
66 3bjc_A CGMP-specific 3',5'-cyc 98.4 2.5E-08 8.4E-13 110.8 0.0 174 135-322 325-521 (878)
67 1h7s_A PMS1 protein homolog 2; 98.4 8.7E-08 3E-12 94.0 3.9 73 459-553 34-113 (365)
68 4eho_A Bacteriophytochrome, PA 98.4 3.9E-06 1.3E-10 89.4 16.2 160 144-317 132-320 (635)
69 1ixm_A SPO0B, protein (sporula 98.4 3.3E-06 1.1E-10 74.7 12.1 143 346-536 23-171 (192)
70 1kij_A DNA gyrase subunit B; t 98.2 1.1E-06 3.6E-11 87.1 6.3 78 454-555 31-121 (390)
71 3h4l_A DNA mismatch repair pro 98.2 1.7E-06 5.8E-11 84.5 5.9 60 459-540 25-84 (367)
72 3zcc_A HAMP, osmolarity sensor 98.1 1.7E-05 5.9E-10 63.8 10.2 69 330-403 46-114 (114)
73 3ke6_A Protein RV1364C/MT1410; 97.8 1.3E-05 4.5E-10 80.4 5.5 66 456-556 294-363 (399)
74 3zrx_A AF1503 protein, osmolar 97.5 0.00042 1.4E-08 55.4 9.3 61 338-403 54-114 (115)
75 1s16_A Topoisomerase IV subuni 97.4 8.7E-05 3E-09 73.3 4.7 43 512-554 64-119 (390)
76 2wer_A ATP-dependent molecular 97.4 2.8E-05 9.6E-10 70.8 1.1 54 462-535 29-97 (220)
77 2ior_A Chaperone protein HTPG; 97.3 3.6E-05 1.2E-09 70.6 -0.4 55 462-536 50-119 (235)
78 1ei1_A DNA gyrase B, GYRB; ATP 97.2 0.00023 7.9E-09 70.2 5.2 73 459-554 34-122 (391)
79 2w1r_A Spovt, stage V sporulat 97.2 0.00078 2.7E-08 54.8 7.3 119 162-308 3-122 (123)
80 1yc1_A HSP 86, heat shock prot 97.1 0.00012 4.1E-09 68.0 1.1 54 462-535 71-139 (264)
81 3fv5_A DNA topoisomerase 4 sub 96.8 0.0011 3.9E-08 58.9 4.8 44 461-527 19-65 (201)
82 2gqp_A Endoplasmin; GRP94, HSP 96.6 0.00061 2.1E-08 62.4 1.8 24 512-535 80-103 (236)
83 3t0h_A Heat shock protein HSP 96.6 0.00031 1.1E-08 63.6 -0.4 23 512-534 80-102 (228)
84 1zxm_A TOPO IIA ATPase, DNA to 96.5 0.0031 1.1E-07 62.1 5.9 48 457-526 50-101 (400)
85 3cwv_A DNA gyrase, B subunit, 96.4 0.0012 4E-08 64.6 2.7 52 456-531 27-79 (369)
86 4duh_A DNA gyrase subunit B; s 96.4 0.0024 8.3E-08 57.4 4.4 47 458-527 34-83 (220)
87 3ttz_A DNA gyrase subunit B; p 96.4 0.0035 1.2E-07 55.4 5.3 48 456-526 28-78 (198)
88 3peh_A Endoplasmin homolog; st 96.2 0.0021 7.2E-08 59.5 2.7 18 512-529 94-111 (281)
89 1qy5_A Endoplasmin; GRP94, NEC 96.2 0.0015 5.1E-08 60.7 1.6 51 463-533 32-97 (269)
90 1y4s_A Chaperone protein HTPG; 96.1 0.0036 1.2E-07 64.4 4.5 23 512-534 75-97 (559)
91 1pvg_A DNA topoisomerase II; G 96.1 0.0073 2.5E-07 59.9 6.3 50 458-529 63-116 (418)
92 4emv_A DNA topoisomerase IV, B 96.0 0.0053 1.8E-07 55.3 4.5 56 456-532 37-100 (226)
93 4eu0_A PELD; C-DI-GMP, signali 95.8 0.084 2.9E-06 49.6 11.9 133 159-314 24-157 (298)
94 2cg9_A ATP-dependent molecular 95.7 0.0073 2.5E-07 63.3 4.6 20 512-531 74-93 (677)
95 3o0i_A HSP90AA1 protein; HSP90 95.2 0.0046 1.6E-07 56.6 1.0 20 512-531 108-127 (256)
96 2o1u_A Endoplasmin; GRP94, HSP 94.9 0.012 3.9E-07 61.8 3.1 51 462-532 48-113 (666)
97 3lnu_A Topoisomerase IV subuni 94.7 0.021 7.1E-07 56.2 4.1 46 461-527 52-98 (408)
98 3nmq_A Heat shock protein HSP 94.3 0.011 3.6E-07 53.6 1.0 18 511-528 86-103 (239)
99 2ioq_A Chaperone protein HTPG; 93.8 0.03 1E-06 58.4 3.2 51 462-532 30-95 (624)
100 3ied_A Heat shock protein; HSP 92.8 0.021 7.3E-07 51.7 0.2 20 512-531 131-150 (272)
101 3e98_A GAF domain of unknown f 91.9 3.1 0.00011 38.0 13.5 146 137-308 96-242 (252)
102 4gfh_A DNA topoisomerase 2; to 91.1 0.17 5.9E-06 56.8 5.0 48 459-527 59-109 (1177)
103 4a2l_A BT_4663, two-component 88.4 0.17 5.9E-06 55.4 2.3 72 219-292 695-773 (795)
104 3ott_A Two-component system se 88.3 0.18 6.3E-06 54.8 2.5 71 220-292 661-739 (758)
105 3v9f_A Two-component system se 82.5 0.43 1.5E-05 52.0 1.8 69 222-292 691-767 (781)
106 3nhq_A Bacteriophytochrome; ph 72.5 4.5 0.00015 41.0 5.7 50 136-185 312-361 (505)
107 3zq5_A Phytochrome-like protei 48.5 39 0.0013 34.3 7.5 49 137-185 326-374 (520)
108 3szt_A QCSR, quorum-sensing co 30.6 2.8E+02 0.0095 24.4 12.5 140 149-304 8-153 (237)
109 2gx5_A GTP-sensing transcripti 27.7 2.7E+02 0.0092 23.3 11.9 40 268-308 126-165 (170)
110 2ks1_B Epidermal growth factor 25.7 1.1E+02 0.0038 19.1 4.0 10 5-14 2-11 (44)
111 2lq0_A De novo designed antifr 21.5 67 0.0023 16.6 2.0 14 57-70 8-21 (26)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.97 E-value=4.5e-30 Score=245.46 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcccc
Q 008720 337 AEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELD 413 (556)
Q Consensus 337 ~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~ 413 (556)
+++..+.+.+|++.++|||||||++|.++++.+... ...+..+++++.+.+.++++..++++++++++.+.+...+.
T Consensus 13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 92 (258)
T 2c2a_A 13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN 92 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence 444556678999999999999999999999998753 23345678899999999999999999999999998888888
Q ss_pred ccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEeecC
Q 008720 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKP 489 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g----~~~i~~~~~~~ 489 (556)
.+++++.+++++++..+...+..+++.+.++.+...+..+.+|+..+.+++.||+.||+||++.+ .+.+..... +
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~-~ 171 (258)
T 2c2a_A 93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK-D 171 (258)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE-T
T ss_pred cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC-C
Confidence 89999999999999999999888999998877645455577899999999999999999999754 233333322 2
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
+ .+.|+|.|||+|||++.++++|+|||+++...+ ...|+||||++||+
T Consensus 172 ~-------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~ 220 (258)
T 2c2a_A 172 G-------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKE 220 (258)
T ss_dssp T-------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHH
T ss_pred C-------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHH
Confidence 2 389999999999999999999999998776533 23599999999984
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.96 E-value=9.5e-28 Score=230.70 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 008720 329 ALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (556)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~ 407 (556)
+++...+++++.++.+.+|++.++||+||||+.|.++++++... ..+++.+++++.+....+++..++++++++++.+.
T Consensus 25 ~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~ 104 (268)
T 4ew8_A 25 ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDA 104 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455556666778999999999999999999999999865 46778889999999999999999999999999998
Q ss_pred CCccccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEe
Q 008720 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASV 486 (556)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g-~~~i~~~~ 486 (556)
+...+...++++.+++++++..+......+++.+.++++.+.+ .+.+|+..+.+|+.||+.||+||++++ .+.+....
T Consensus 105 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~ 183 (268)
T 4ew8_A 105 GEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARR 183 (268)
T ss_dssp TCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 8888889999999999999999999988999999998876654 477799999999999999999999874 44444433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.++ ++.|+|.|||+|||++..+++|+||++++. .|+|+||++||+
T Consensus 184 -~~~-------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~ 228 (268)
T 4ew8_A 184 -ALG-------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKA 228 (268)
T ss_dssp -CSS-------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHH
T ss_pred -cCC-------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHHH
Confidence 333 499999999999999999999999996543 489999999974
No 3
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.94 E-value=6e-26 Score=226.92 Aligned_cols=186 Identities=25% Similarity=0.341 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHH
Q 008720 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~ 420 (556)
+++++|++.++||+||||++|.++++.+..... ++...++++.+...++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 346789999999999999999999999987533 3345788999999999999999999999983 335567789999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEeecCCCCCCCCCCC
Q 008720 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
+++++++..+...+..+++.+.++.++..+ .+.+|+..+.+|+.||+.||+||+++ |.+.+.....++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999988899999988866543 47789999999999999999999964 555555444332
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+|||++.+++||+|||+++. .|+|+||++||+
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~ 317 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRK 317 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHH
T ss_pred ----------EEEEEEEECCCCCChHHHhhcCCCCccCCC-----CCccchHHHHHH
Confidence 399999999999999999999999998753 489999999974
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.93 E-value=2.8e-26 Score=231.93 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcccccccee
Q 008720 340 AIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (556)
Q Consensus 340 ~~~~~~~l~~~i~Hel~~pL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~ 418 (556)
.++.+.++++.++||++|||+.|. ++.+++.....+++.+++++.+..+..++..++++++++++.+.+...+..++++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~ 196 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS 196 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCC
Confidence 355678899999999999999998 5555544444467788999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHHHHHHhhhcC---CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC---------eEEEEEEe
Q 008720 419 LQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIASV 486 (556)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g---------~~~i~~~~ 486 (556)
+.++++++++.+...+..+ .+.+.++.+.+ ..+.+|+..|.+|+.||+.||+||+.++ .+.+.+..
T Consensus 197 l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~ 274 (388)
T 1gkz_A 197 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN 274 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe
Confidence 9999999999999988766 34455544433 2456799999999999999999999765 45554433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC---------------------CCC
Q 008720 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QTP 545 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~---------------------~~~ 545 (556)
. ++ ++.|+|+|+|+|||++.+++||+|||+++.... ...
T Consensus 275 ~-~~-------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (388)
T 1gkz_A 275 N-DV-------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMH 334 (388)
T ss_dssp C-SS-------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCS
T ss_pred C-CC-------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcC
Confidence 3 22 499999999999999999999999999876431 125
Q ss_pred CCceeeecccC
Q 008720 546 RAGLGLAICRR 556 (556)
Q Consensus 546 G~GlGL~i~k~ 556 (556)
|+|+||++||+
T Consensus 335 G~GLGL~i~r~ 345 (388)
T 1gkz_A 335 GFGFGLPTSRA 345 (388)
T ss_dssp CSSCHHHHHHH
T ss_pred CccCCHHHHHH
Confidence 99999999984
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.93 E-value=5.4e-27 Score=218.64 Aligned_cols=187 Identities=24% Similarity=0.324 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
+.+|++.++||+||||++|.++++++..... ++..+++++.+.+.++++..++++++++++.+.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 3579999999999999999999998876533 334466778888999999999999999999988887888899999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCC
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~ 502 (556)
+++++..+...+..+++.+.+++++... .+.+|+..+.+|+.||+.||+||+++++.+.+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~-~~~------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTL-NAD------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEE-CSS-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEE-ccC-------------
Confidence 9999999999999999999998876643 4677999999999999999999998765433322 111
Q ss_pred CCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 503 ~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.|+|+|||+|||++.++++|+|||+++.. ..+|+|+||++||+
T Consensus 147 ---------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~ 189 (222)
T 3jz3_A 147 ---------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQR 189 (222)
T ss_dssp ---------EEEEECSCC----------------------------CTHHHHHH
T ss_pred ---------eEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHHH
Confidence 28899999999999999999999986533 23599999999974
No 6
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.92 E-value=2.8e-25 Score=210.17 Aligned_cols=186 Identities=19% Similarity=0.376 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH
Q 008720 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 341 ~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~-~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
.+.+++|++.++||+||||++|.++++++.+...+ ++.+++++.+.+..+++..++++++++++.... ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 34567899999999999999999999999877554 456789999999999999999999999886543 4568999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCC
Q 008720 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
..++++++..+......+++.+.++.++ ..+.+|+..+.+++.||+.||+||+++++.+.+.....++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999988888888887543 3477899999999999999999999655443333333333
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++..+++|+||++++.. .|+|+||++||+
T Consensus 155 ----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i~~~ 197 (244)
T 3d36_A 155 ----------RVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMVVYR 197 (244)
T ss_dssp ----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHHHHH
T ss_pred ----------EEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHHHHH
Confidence 4999999999999999999999999987632 489999999974
No 7
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.92 E-value=2.5e-25 Score=225.26 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=142.7
Q ss_pred HHHHHHHHhhhc-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHhHhhc-CCcccc
Q 008720 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (556)
Q Consensus 346 ~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~l~~~~~~~~-~~~~l~ 413 (556)
+++..++||||| ||+.|.++++++.....++. .+++++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 367778899999 99999999999876544433 344677 477888888 9999999999876 455666
Q ss_pred c----cceeHHHHHHHHHHHHHHhhhc-----CCceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 008720 414 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (556)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~-----~~i~i~~~~--~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~--- 479 (556)
. +++++.++++++++.++..+.. +++.+.+.. .+..+..+.+|+..|.+|+.||+.||+||+++|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8999999999999999998876 888887744 1233445778999999999999999999997664
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCC------CCCCCCCc
Q 008720 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 548 (556)
Q Consensus 480 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~~~~~G~G 548 (556)
+.+.+...++ ++.|+|+|+|+|||++.+++||+|||+++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 5555543322 4999999999999999999999999998764 22235999
Q ss_pred eeeecccC
Q 008720 549 LGLAICRR 556 (556)
Q Consensus 549 lGL~i~k~ 556 (556)
+||+|||+
T Consensus 315 LGL~i~~~ 322 (394)
T 2btz_A 315 YGLPISRL 322 (394)
T ss_dssp CHHHHHHH
T ss_pred CCHHHHHH
Confidence 99999974
No 8
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.92 E-value=9.4e-25 Score=220.95 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=149.7
Q ss_pred HHHHHHHHhhhc-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HhHhhcCCcccc
Q 008720 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (556)
Q Consensus 346 ~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~l~~-~~~~~~~~~~l~ 413 (556)
+++..++||||| ||+.|.++++++.... ..++.+++++ .+.+.+.++ +++++++ +++. .+...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356667899999 8999999999776432 3556788888 688899999 9999998 6665 4555666
Q ss_pred c----cceeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe---
Q 008720 414 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (556)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~~-----~i~i~~~~--~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~--- 479 (556)
. +++++.++++++++.+...+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||+++++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 79999999999999999988777 88887754 2333446778999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCC------CC-CCCCC
Q 008720 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 547 (556)
Q Consensus 480 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~~-~~~G~ 547 (556)
+.+.+...++ ++.|.|+|+|+|||++.+++||+|||+++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCc
Confidence 5555543322 4999999999999999999999999998764 21 23599
Q ss_pred ceeeecccC
Q 008720 548 GLGLAICRR 556 (556)
Q Consensus 548 GlGL~i~k~ 556 (556)
|+||+|||+
T Consensus 314 GLGL~i~~~ 322 (394)
T 2e0a_A 314 GYGLPISRL 322 (394)
T ss_dssp SCHHHHHHH
T ss_pred ccCHHHHHH
Confidence 999999974
No 9
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.92 E-value=9.6e-25 Score=221.88 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhhhc-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHhHhhc----C
Q 008720 344 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 408 (556)
Q Consensus 344 ~~~l~~~i~Hel~~-----pL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~l~~~~~~~~----~ 408 (556)
+..|++.+ ||||| ||+.|.++++++.....+ ++.+++++. +.+...++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 34566665 99999 999999999977654333 344667776 77778888 9999999999864 2
Q ss_pred ---CccccccceeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 008720 409 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (556)
Q Consensus 409 ---~~~l~~~~~~l~~ll~~~~~~~~~~~~~~-----~i~i~~~~--~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g 478 (556)
......+++++.++++++++.+...+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||++++
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677789999999999999999988766 88888766 123344577899999999999999999999765
Q ss_pred e--------EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCC-------CCC
Q 008720 479 Y--------VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS-------SCQ 543 (556)
Q Consensus 479 ~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~-------~~~ 543 (556)
+ +.+.+...++ ++.|+|+|+|+|||++.+++||+|||+++.. ...
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCC--------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 4 5555443322 4999999999999999999999999998764 122
Q ss_pred CCCCceeeecccC
Q 008720 544 TPRAGLGLAICRR 556 (556)
Q Consensus 544 ~~G~GlGL~i~k~ 556 (556)
..|+|+||+|||+
T Consensus 323 ~~G~GLGL~Ivr~ 335 (407)
T 2q8g_A 323 LAGFGYGLPISRL 335 (407)
T ss_dssp SSCTTCHHHHHHH
T ss_pred CCCcCCCHHHHHH
Confidence 3599999999974
No 10
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.90 E-value=7.1e-24 Score=216.01 Aligned_cols=190 Identities=18% Similarity=0.235 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhhhcHHH-----HHHHHHHHHhcCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhh-cCCcc
Q 008720 344 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDLT----PEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 411 (556)
Q Consensus 344 ~~~l~~~i~Hel~~pL~-----~I~~~~~~l~~~~~~----~~~~~~l~~i~~~--~~~l~~li~~l~~~~~~~-~~~~~ 411 (556)
+.+|++ ++|||||||+ .|.|+++++.....+ ++.+++++.+... ..++ ++++++.+.+.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345765 5599999999 789999977653222 3456677775555 6677 899987665542 22222
Q ss_pred c----cccceeHHHHHHHHHHHHHHhhhc-----CCceEEEEeC--CCCCceEEccHHHHHHHHHHHHHHHhhcCCCCe-
Q 008720 412 L----DNGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (556)
Q Consensus 412 l----~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~i~~~~~--~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~- 479 (556)
. ..+++++.++++++++.++..+.. +++.+.+... +..+..+.+|+..|.+|+.||+.||+||+++++
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 237899999999999999888765 7777776432 233445778999999999999999999997643
Q ss_pred --------EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCC------C-CCC
Q 008720 480 --------VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQT 544 (556)
Q Consensus 480 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~------~-~~~ 544 (556)
+.+.+... ++ .+.|+|+|+|+|||++.+++||+|||+++.. . ...
T Consensus 275 ~~~~~~~~I~I~~~~~-~~-------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-KE-------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEEC-SS-------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeC-CC-------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 55544333 22 4999999999999999999999999998764 1 223
Q ss_pred CCCceeeecccC
Q 008720 545 PRAGLGLAICRR 556 (556)
Q Consensus 545 ~G~GlGL~i~k~ 556 (556)
.|+|+||+|||+
T Consensus 335 ~G~GLGL~I~k~ 346 (419)
T 1y8o_A 335 AGFGYGLPISRL 346 (419)
T ss_dssp --CTTHHHHHHH
T ss_pred CCeecCHHHHHH
Confidence 599999999974
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.90 E-value=6.3e-24 Score=200.63 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=124.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHHH
Q 008720 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (556)
Q Consensus 347 l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (556)
++++|||||||||++|.++++++.+...++..+++++.|.+..+++..+++ +.++..+. .....++++.++.+.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~----~~r~~~~~-~~~~~~~~~~~l~~~- 122 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQ----FTRVAFGA-SASAENFDSRELEKL- 122 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHTTC-CSSCCCEEHHHHHHH-
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc-ccccccccHHHHHHH-
Confidence 778899999999999999999999877777778889999998888877764 34433222 334457787765433
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCC
Q 008720 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTD 506 (556)
Q Consensus 427 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 506 (556)
+......+++.+..+.++. . .+..+.|++.||+.||+||++.|+.+.+.....++
T Consensus 123 ---~~~~~~~~~i~l~~~~~~~----~--~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~---------------- 177 (247)
T 4fpp_A 123 ---AQGVFAHVRPTLDWQIEPQ----A--MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG---------------- 177 (247)
T ss_dssp ---HHHHHTTSSSEEEECCCSC----E--ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT----------------
T ss_pred ---HHHHHHhhhhhccccccch----h--hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC----------------
Confidence 3444456777776644322 1 34678899999999999999876544333333333
Q ss_pred CceEEEEEEEecCCC--CCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 507 GHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 507 ~~~~v~i~V~DnG~G--i~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|.|+|+|+| ||++..+++|++|++++ ..|+||||+|||+
T Consensus 178 ---~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-----~~G~GLGLai~~~ 221 (247)
T 4fpp_A 178 ---RFSIIADAKGPRARLRPEVLAGLKGEPLAEG-----LGGPWVQAAYLNA 221 (247)
T ss_dssp ---EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----CHHHHHHHHHHHH
T ss_pred ---EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----CCCccHHHHHHHH
Confidence 389999999988 56777788888887654 2489999999984
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.82 E-value=2.2e-20 Score=187.24 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHH
Q 008720 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (556)
Q Consensus 343 ~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~l 422 (556)
.+.+++.+++||+++|++.+.+..+.+.. +.+.+..+++..++++++++.. ..+.+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 46678899999999999999877654432 4578888899999999998864 2236788899
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHH---HHHHHHHHHHHHhhcC------------CC-CeEEEEEEe
Q 008720 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKR---LMQTILNIVGNAVKFT------------KE-GYVSIIASV 486 (556)
Q Consensus 423 l~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~---l~~vl~nLl~NAik~~------------~~-g~~~i~~~~ 486 (556)
++.+...++..+...+..+++++++... ..|+.. +.+++.||+.||+||+ ++ |.+.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCe---eecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 9999999998888777777777765432 237754 5555999999999997 33 444444433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh------------------------hhhhccCcccCCCCC
Q 008720 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQSRGSSC 542 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~------------------------~~iF~~f~~~~~~~~ 542 (556)
. ++ ++.|+|+|||+||+++.+ ++||+|||+++...+
T Consensus 147 ~-~~-------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~ 206 (379)
T 1b3q_A 147 E-GN-------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS 206 (379)
T ss_dssp E-TT-------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------
T ss_pred e-CC-------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC
Confidence 3 32 499999999999999976 889999999887766
Q ss_pred CCCCCceeeecccC
Q 008720 543 QTPRAGLGLAICRR 556 (556)
Q Consensus 543 ~~~G~GlGL~i~k~ 556 (556)
..+|+|+||++||+
T Consensus 207 ~~~G~GlGL~iv~~ 220 (379)
T 1b3q_A 207 EVSGRGVGMDVVKN 220 (379)
T ss_dssp -----CCCSHHHHH
T ss_pred CCCCccccHHHHHH
Confidence 66799999999974
No 13
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.82 E-value=1.2e-19 Score=168.39 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeH
Q 008720 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (556)
Q Consensus 342 ~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l 419 (556)
+++.++++.++|++++||++|...++.+... ..++...+.+..+.+.++++...++++.... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4467899999999999999999999887653 3334456667777777666666666554322 25678
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCC
Q 008720 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (556)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~ 499 (556)
.+.++.+...+. ..++.+.++.+...+.....+...+.+++.|++.||+||++++.+.+.....++
T Consensus 95 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---------- 160 (218)
T 3ehh_A 95 KDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---------- 160 (218)
T ss_dssp HHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----------
T ss_pred HHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC----------
Confidence 888777776664 567888877665544444557788999999999999999988777666655433
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|+|||+|||++.. .|+|+||++||+
T Consensus 161 ----------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~ 190 (218)
T 3ehh_A 161 ----------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRE 190 (218)
T ss_dssp ----------EEEEEEEESSCCCC-------------------------CHHHHHHH
T ss_pred ----------EEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHHH
Confidence 399999999999999864 378999999873
No 14
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.74 E-value=6.6e-18 Score=146.83 Aligned_cols=118 Identities=29% Similarity=0.421 Sum_probs=97.6
Q ss_pred cccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEeecCCC
Q 008720 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPES 491 (556)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~-g~~~i~~~~~~~~~ 491 (556)
+.+++++.+++++++..+...+..+++.+++++++.. ..+.+|+..+.+++.||+.||+||+++ +.+.+.... .++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~-~~~- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYT- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE-CSS-
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEe-cCC-
Confidence 4568999999999999999999999999999886553 347779999999999999999999965 444444433 222
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.++|+|||+||+++..+++|+||++++. .|+|+||++||+
T Consensus 79 ------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~~ 120 (152)
T 3a0y_A 79 ------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRK 120 (152)
T ss_dssp ------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHHH
T ss_pred ------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHHH
Confidence 499999999999999999999999997642 489999999873
No 15
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.74 E-value=9.5e-18 Score=145.86 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=98.6
Q ss_pred cceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCC
Q 008720 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (556)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~ 494 (556)
+++++.++++++++.+...+..+++.+.+++++.. .+.+|+..+.+++.||+.||+||+++ .+.+.+...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~----- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC-----
Confidence 47999999999999999999999999999876553 37789999999999999999999986 55555443333
Q ss_pred CCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++.++++|+||++++... .|+|+||++||+
T Consensus 74 ---------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~~ 117 (152)
T 1id0_A 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVARE 117 (152)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHHH
T ss_pred ---------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHHH
Confidence 29999999999999999999999999876543 589999999874
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.73 E-value=1.2e-17 Score=144.78 Aligned_cols=118 Identities=23% Similarity=0.387 Sum_probs=88.3
Q ss_pred cccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCC
Q 008720 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL 492 (556)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~ 492 (556)
+.+++++.+++++++..+.... +++.+.++.+ .+..+.+|+..+.+++.||+.||+||++++.+.+.....++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~--- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---
Confidence 4568999999999999988765 4566666543 34457789999999999999999999988855555544433
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|.|||+||+++.++++|+||+++... +..|+|+||++||+
T Consensus 77 -----------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~ 121 (150)
T 1ysr_A 77 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVAQ 121 (150)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHH
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHHH
Confidence 3999999999999999999999999976433 24589999999974
No 17
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.71 E-value=5.8e-17 Score=142.36 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=95.3
Q ss_pred cccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCC
Q 008720 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~ 490 (556)
+++.+++++.++++++++.+.. .+..+++++.... ..+.+|+..+.+++.||+.||+||+ .+.+.+.....++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~- 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS-IEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC-CCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC-ceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCC-
Confidence 4567799999999999998653 4555666654433 3477799999999999999999999 6666666654433
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.+.|+|+|||+||+++.++++|+||++++... ...|+|+||++||+
T Consensus 77 -------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-~~~g~GlGL~i~~~ 122 (161)
T 1bxd_A 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQR 122 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHH
T ss_pred -------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-CCCCcccCHHHHHH
Confidence 39999999999999999999999999877543 23699999999974
No 18
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.70 E-value=1.3e-17 Score=146.35 Aligned_cols=129 Identities=25% Similarity=0.322 Sum_probs=80.5
Q ss_pred cccccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEeec
Q 008720 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE--GYVSIIASVAK 488 (556)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~--g~~~i~~~~~~ 488 (556)
+++.+++++.++++++++.+... ..+++.+.+++++..+. +.+|+..+.+++.||+.||+||+++ +.+.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 34567899999999999999887 67888898887766554 6679999999999999999999974 44545444332
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
... ........++.|+|.|||+||+++.++++|+||++++. .|+|+||++||+
T Consensus 80 ~~~----------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~g~GlGL~i~~~ 132 (160)
T 1r62_A 80 QLT----------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARN 132 (160)
T ss_dssp EEE----------ETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHH
T ss_pred ccc----------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----CCCccCHHHHHH
Confidence 200 00001112489999999999999999999999997653 489999999974
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.69 E-value=1.2e-16 Score=142.81 Aligned_cols=121 Identities=24% Similarity=0.415 Sum_probs=94.4
Q ss_pred ceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEeecCCCCCC
Q 008720 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSD 494 (556)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~-g~~~i~~~~~~~~~~~~ 494 (556)
++++.++++++++.+... ..+++.+.++++.. +..+.+|+..|.+++.||+.||++|+++ +.+.+.+.....+.
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999988 78888998887654 3457789999999999999999999966 44555444333322
Q ss_pred CCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCC-CCCCCceeeecccC
Q 008720 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~-~~~G~GlGL~i~k~ 556 (556)
++.|+|.|||+||+++.++++|++|++.+...+ ...|+|+||++||+
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~ 124 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKE 124 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHH
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHH
Confidence 499999999999999999999999998665432 33589999999873
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.65 E-value=3.2e-17 Score=148.18 Aligned_cols=123 Identities=15% Similarity=0.281 Sum_probs=92.9
Q ss_pred ccceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC------------CC-CeE
Q 008720 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT------------KE-GYV 480 (556)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~------------~~-g~~ 480 (556)
.+++++.++++++...+...+..+++.+.++++.........+...+.+++.||+.||+||+ ++ +.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999988888888887655432222334456666999999999997 33 334
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh------------------------hhhhccCcc
Q 008720 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQ 536 (556)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~------------------------~~iF~~f~~ 536 (556)
.+.+... ++ ++.|+|+|||+||+++.+ +++|+|||+
T Consensus 82 ~I~~~~~-~~-------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~ 141 (189)
T 1i58_A 82 ILSARHE-GN-------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS 141 (189)
T ss_dssp EEEEEEE-TT-------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCS
T ss_pred EEEEEec-CC-------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccc
Confidence 4444333 32 499999999999999976 899999998
Q ss_pred cCCCCCCCCCCceeeecccC
Q 008720 537 SRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 537 ~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.......|+|+||++||+
T Consensus 142 ~~~~~~~~~g~GlGL~iv~~ 161 (189)
T 1i58_A 142 TKEKVSEVSGRGVGMDVVKN 161 (189)
T ss_dssp HHHHHHGGGTCCCHHHHHHH
T ss_pred ccccCCCCCCCccCHHHHHH
Confidence 76543333589999999873
No 21
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.56 E-value=4.9e-14 Score=126.53 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccc
Q 008720 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (556)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 204 (556)
...++++..++++++++++..++++++.+.+++|++++++.+++.+.+.+++++|+|++++++ ......+.+.......
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCccC
Confidence 456778888889999999999999999999999999999999999999999999999999543 3333333232222222
Q ss_pred cccccCChhHHHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC
Q 008720 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (556)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~ 284 (556)
..++ ..+.+..++.++++..+++...+..+.........+.++.+++| +..++..+|++.+++..
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIP--------------ITYRNEMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEE--------------EEECCEEEEEEEeCcCC
Confidence 2244 37888999999999999987776655421111112567888999 55677789999998888
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHH
Q 008720 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (556)
Q Consensus 285 ~~~~~~~e~~ll~~~a~~~~~al~~a~~ 312 (556)
++.|+++|.+++..+|+++++++++++.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763
No 22
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.50 E-value=3.2e-14 Score=119.37 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=74.5
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCC
Q 008720 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (556)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~ 496 (556)
+++.+.++.+...++ ..++.++++.+...+.....+...+.+++.|+++||+||++++.+.+.....++
T Consensus 2 v~l~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~------- 70 (128)
T 3ehg_A 2 IRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK------- 70 (128)
T ss_dssp CCHHHHHHHHHHHHH----HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT-------
T ss_pred ccHHHHHHHHHHHHH----HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC-------
Confidence 455666666655554 578888877665444444557888999999999999999988777666654433
Q ss_pred CCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
++.++|+|||+|||++.. .|+|+||++||+
T Consensus 71 -------------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~ 100 (128)
T 3ehg_A 71 -------------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRE 100 (128)
T ss_dssp -------------EEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHHH
T ss_pred -------------EEEEEEEECCcCcCcccC-----------------CCCCccHHHHHH
Confidence 399999999999998864 378999999873
No 23
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.45 E-value=2.2e-13 Score=121.45 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=130.2
Q ss_pred HhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhH
Q 008720 135 LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (556)
+++++++++..+.++++.+.+..+.+++++.+++.+.+.+++++|+|+++++++..+...++..........++...+.+
T Consensus 6 ~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 85 (181)
T 3e0y_A 6 RANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGIT 85 (181)
T ss_dssp -----CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCee
Confidence 34555667888999999999999999999999999999999999999999987775555555544444445677778899
Q ss_pred HHHhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHH
Q 008720 215 TDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELE 294 (556)
Q Consensus 215 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ 294 (556)
..++.++++..+++...+..+.........+..+.+++| +..++..+|++.+.+..++.|++++.+
T Consensus 86 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~~ 151 (181)
T 3e0y_A 86 GSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFP--------------IGDKKEVYGVINLNTTSIRSFHEDEIY 151 (181)
T ss_dssp HHHHHHCCCEEEEEECCCCCC---------CEEEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHHH
T ss_pred eehhhcCCeEEecCcccCccccccccccccCcceEEEEE--------------EEeCCeEEEEEEEeeCCCCCCCHHHHH
Confidence 999999999999877665544322222234567888889 555677899999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008720 295 LIDVVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 295 ll~~~a~~~~~al~~a~~~~~~~ 317 (556)
++..+|.+++.++++++.+++.+
T Consensus 152 ~l~~la~~~a~al~~~~~~~~~~ 174 (181)
T 3e0y_A 152 FVSIIANLILTAIKLRQQVASSR 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776544
No 24
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.44 E-value=1.6e-12 Score=114.65 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=133.3
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc--cccccccccCChhHHHH
Q 008720 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTDV 217 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v 217 (556)
.+.+..+.++++.+.+..+.+++++.+++.+.+.+++++|+||++|+++..+......+.. ......++...+.+..+
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 3467789999999999999999999999999999999999999999888766665544422 22333577788899999
Q ss_pred hcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008720 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (556)
+.++++..+++...+..+.........+.++.+.+| +..++..+|++.+.+..++.|++++.+++.
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIP--------------IIEQGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEE--------------EEETTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEe--------------EEECCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 999999999887766554432222345677888899 556677899999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008720 298 VVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 298 ~~a~~~~~al~~a~~~~~~~ 317 (556)
.+|.+++.++++++++++.+
T Consensus 150 ~la~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887643
No 25
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.43 E-value=7.6e-13 Score=118.97 Aligned_cols=171 Identities=11% Similarity=0.088 Sum_probs=130.3
Q ss_pred HhhhHHHHhHHHHHHHHHHHcc-CChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEE-eecc--------ccccc
Q 008720 135 LILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 204 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~~~-~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~--------~~~~~ 204 (556)
.++++.++.+.+.++++.+.++ ++.+++++.+++.+.+.+++++|+|+++|+++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 3456677888899999999877 599999999999999999999999999998776665432 1111 11334
Q ss_pred cccccCChhHHHHhcccCceEccCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC
Q 008720 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (556)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (556)
..+|...+.++.++.+++++.+++...+..+... ......+.++.+++| +..++.++|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEE--------------eccCCeEEEEEEEEeC
Confidence 4577788999999999999999987766544311 111124556778889 5567788999999887
Q ss_pred CCC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 284 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 284 ~~~-~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~ 319 (556)
.++ .|++++.+++..+|.+++++|++++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 999999999999999999999999998765543
No 26
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.40 E-value=1.5e-12 Score=115.79 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=126.6
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEE-Eeeccc---cccccccccCChhHH
Q 008720 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQ---IQIGSSVPINLPIVT 215 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 215 (556)
+..++.+.++++.+.++++++++++.+++.+.+.+++++|+|+++|+++..+... ..+... ......+|...+.+.
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 4567889999999999999999999999999999999999999999888776542 111111 122334667778889
Q ss_pred HHhcccCceEccCCCchhhhhhc-----ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcccc
Q 008720 216 DVFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (556)
Q Consensus 216 ~v~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (556)
.++.++++.+++.......+... ......+.++.+++| +..++..+|++.+.+..++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------L~~~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSP--------------LRSGGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEE--------------EEECCEEEEEEEEEECCCCCCCH
Confidence 99999999988433223322211 001123456778888 56667889999999988889999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 291 ~e~~ll~~~a~~~~~al~~a~~~~~~~~ 318 (556)
++.+++..+|++++++++|++++++.++
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999877643
No 27
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.40 E-value=2e-12 Score=116.12 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=124.0
Q ss_pred HHHhHHHHHHHHH-HHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc---------ccccccccc
Q 008720 140 EETGRHVRMLTHE-IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPI 209 (556)
Q Consensus 140 ~~~~~~l~~~~~~-l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (556)
.+..+.|.++++. +.+.+|++++++.+++.+.+.+++++|+||++|+++..+......... ......+|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 3345567888887 467789999999999999999999999999999988877654432211 112234667
Q ss_pred CChhHHHHhcccCceEccCCCchhhhhhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEec-cCCCCc
Q 008720 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRK 287 (556)
Q Consensus 210 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~-~~~~~~ 287 (556)
..+....++.+++++.+++...+..+... ......+.++.+++| +..++..+|++.+. ...++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMP--------------IVSRGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEee--------------ecccCceeeEEEEEEcCCCCC
Confidence 78889999999999999887665443211 112223456778888 45566778888664 566789
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 288 WRDHELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 288 ~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~ 318 (556)
|+++|.+++..+|.+++++|+|+++|++.++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876543
No 28
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.38 E-value=2.9e-12 Score=112.89 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=105.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccc--cccccccCC--hhHHHHhcccCce
Q 008720 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFNSAQAM 224 (556)
Q Consensus 149 ~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~v~~~~~~~ 224 (556)
.+..|++++|++++++++++++++.+++|||.||.+++++...........+.. .+..+|... +.....+..++..
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 466799999999999999999999999999999999998776555544443322 233333322 2245678889999
Q ss_pred EccCCCchhh-hhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEecc-CCCCccccchHHHHHHHHHH
Q 008720 225 RLPYNCPLAR-IRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 225 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~~ 302 (556)
.++|...... ..........+-++.+.+| +..++...|++.++. ..+|.|++.|++++..+|++
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vP--------------i~~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVP--------------MVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEE--------------EEETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEE--------------EEECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 8887654211 0000111234567788888 455666788888766 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008720 303 VAVALSHAAILEDSM 317 (556)
Q Consensus 303 ~~~al~~a~~~~~~~ 317 (556)
+++||++++++++.+
T Consensus 148 l~iAi~qa~l~~~~~ 162 (171)
T 4glq_A 148 GSLVLERLHFLEQTI 162 (171)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999886543
No 29
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.36 E-value=7.7e-13 Score=111.06 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=74.5
Q ss_pred cceeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCC
Q 008720 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (556)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~ 494 (556)
+.+++.+.++++++.+ ..+++.++++++...+.....++..+.+++.||++||+||++++.+.+.....+
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~------ 72 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDD------ 72 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESS------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcC------
Confidence 4788999999999888 357778887776655444444588999999999999999998776666554321
Q ss_pred CCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. +.++|.|||+||+++. +|+||++||+
T Consensus 73 --------------~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~~~ 99 (129)
T 3zxo_A 73 --------------D-LCIEVTDNGRGMPDEF--------------------TGSGLTNLRQ 99 (129)
T ss_dssp --------------E-EEEEEEECCCCCTTTT--------------------CSHHHHHHHH
T ss_pred --------------C-EEEEEecCCCCCCccc--------------------CCcCHHHHHH
Confidence 2 7899999999999864 4899999873
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.33 E-value=1.9e-11 Score=107.38 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=127.8
Q ss_pred HHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc--cccccccccCChhHHH
Q 008720 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVTD 216 (556)
Q Consensus 139 ~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 216 (556)
+++++..+.++++.+.+..+.+++++.+++.+.+.+++++|+|++.++++..+......+.. ......++...+.+..
T Consensus 5 ~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 84 (171)
T 3ci6_A 5 SNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVGL 84 (171)
T ss_dssp CCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeehh
Confidence 45577789999999999999999999999999999999999999999887776665544432 2233356777889999
Q ss_pred HhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHH
Q 008720 217 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 296 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 296 (556)
++.++++..+++......+.........+..+.+.+| +..++..+|++.+....++.|++.+.+++
T Consensus 85 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~f~~~~~~~l 150 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVP--------------VMYRRKVMGVLVVQNKQPQDFSEAAESFL 150 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC---------CCCEEEEEE--------------EEETTEEEEEEEEEESSCCCCCHHHHHHH
T ss_pred hhccCceEEecCCCcCcchhccccccccccceEEEEe--------------EEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 9999999999877665543322111233457788888 55677889999999888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008720 297 DVVADQVAVALSHAAILED 315 (556)
Q Consensus 297 ~~~a~~~~~al~~a~~~~~ 315 (556)
..+|.+++.++++++++++
T Consensus 151 ~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 151 VTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887754
No 31
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.32 E-value=5.8e-12 Score=110.15 Aligned_cols=155 Identities=14% Similarity=0.227 Sum_probs=107.2
Q ss_pred ccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc---cccccccccCChhHHHHhcccCceEccCCCc
Q 008720 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (556)
Q Consensus 155 ~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~ 231 (556)
..++++++++.+++.+.+.++++++++++++++.. .+....... ...+..+|...+.+..+++++++.+.+....
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L--~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~ 79 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANETL--KLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDT 79 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEE--EEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCT
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEE--EEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccc
Confidence 34689999999999999999999999999986543 333322221 1234567777889999999999998754443
Q ss_pred hhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008720 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~ 311 (556)
...+.........+.++.+++| |..++..+|++.+.+..++.|++++.+++..+|++++++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~S~l~vP--------------L~~~~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ 145 (165)
T 3o5y_A 80 QDNFYEKQYLAILDLKSILVIP--------------IYSKNKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVE 145 (165)
T ss_dssp TCCCTTHHHHHTTTCCEEEEEE--------------EECSSCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHhhCCCEEEEeC--------------eeECCEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222211111234668889999 66677889999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008720 312 ILEDSMRARNQLME 325 (556)
Q Consensus 312 ~~~~~~~~~~~l~~ 325 (556)
+|++..+.++++++
T Consensus 146 ly~~~~~~~~~~~~ 159 (165)
T 3o5y_A 146 LYGQVLRSKQEWED 159 (165)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99987766655443
No 32
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.32 E-value=1.4e-12 Score=112.00 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=57.9
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhh
Q 008720 455 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (556)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~----g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~i 530 (556)
.|...+.+++.||+.||+||+.+ +.+.+.+...++ ++.|+|+|||+||+ .++++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~--------------------~~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC--------------------EEEEEEEECCCCcC--hHHHh
Confidence 37888999999999999999965 445555444332 39999999999999 88999
Q ss_pred hccCcccCCCCCCCCCCceeeecccC
Q 008720 531 FTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 531 F~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
|++|++++.. ..|+|+||++||+
T Consensus 93 ~~~~~~~~~~---~~~~GlGL~iv~~ 115 (145)
T 1th8_A 93 RQPLFTTKPE---LERSGMGFTIMEN 115 (145)
T ss_dssp TCCC----------CCCSCHHHHHHH
T ss_pred hcccccCCCC---CCCCcchHHHHHH
Confidence 9999987652 2588999999873
No 33
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.28 E-value=5.8e-11 Score=104.25 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--cccccccc--CChhHHHHhc
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~ 219 (556)
..++++++.+.+..+.+++++.+++.+.+.+++++|+|+++|+++..+......+... .....++. ..+.+..++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4578899999999999999999999999999999999999998888777766555322 23344555 5788899999
Q ss_pred ccCceEccCCCchhhhhhc----ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHH
Q 008720 220 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (556)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ 294 (556)
++++..+++.......... ......+.++.+.+| +..++..+|++.+.+..+ +.|++++.+
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICP--------------IVVKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEE--------------EEETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEE--------------EEeCCcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999877665543211 011224567778888 556777899999998664 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008720 295 LIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 295 ll~~~a~~~~~al~~a~~~~~ 315 (556)
++..+|.++++++++++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998763
No 34
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.26 E-value=1.7e-11 Score=112.08 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=94.1
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecc---cccccccccc
Q 008720 133 MGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPI 209 (556)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 209 (556)
+..++++.+++..+.++++.+++++|++++++.+++.+.+.+++|+|.||++++++........... +...+..+|.
T Consensus 5 ~~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (208)
T 2lb5_A 5 TWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPA 84 (208)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEG
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCCh
Confidence 4456677778889999999999999999999999999999999999999999987665444444322 1112222232
Q ss_pred CC--hhHHHH------------------------hcccCceEccCCCchhhhh-hcccCCCCCcceeeeeccccccCccc
Q 008720 210 NL--PIVTDV------------------------FNSAQAMRLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQI 262 (556)
Q Consensus 210 ~~--~~~~~v------------------------~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~ 262 (556)
.. ...... ..+++++.+++........ ........+.++.+++|
T Consensus 85 ~~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vP--------- 155 (208)
T 2lb5_A 85 GDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------- 155 (208)
T ss_dssp GGCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEE---------
T ss_pred hhCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEE---------
Confidence 11 111222 3334444444332221000 00000123567788888
Q ss_pred cCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 263 NDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 263 ~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~ 315 (556)
+..++..+|++.+.+..++.|+++|++++..+|.+++++++++++++.
T Consensus 156 -----i~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 156 -----LMHHQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -----EEETTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----EEECCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777899999998889999999999999999999999999888754
No 35
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1.1e-11 Score=103.12 Aligned_cols=94 Identities=24% Similarity=0.261 Sum_probs=69.4
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCC
Q 008720 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (556)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~ 497 (556)
++.+.++++.+.+ ...++.++++++.+.+.....+...+.+++.|+++||+||++++.+.+.....+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~--------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVED--------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEE---------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCC---------
Confidence 4566677777666 356777777776554444444578899999999999999999876666554432
Q ss_pred CCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccCCCCCCCCCCceeeecccC
Q 008720 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 498 ~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
. +.++|+|||+||+++. +|+||++||+
T Consensus 69 -----------~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~~~ 95 (124)
T 3zxq_A 69 -----------D-VRVEVVDDGVGISGDI--------------------TESGLRNLRQ 95 (124)
T ss_dssp -----------E-EEEEEEECCCSSCGGG--------------------SHHHHHHHHH
T ss_pred -----------C-EEEEEEECCCCCCccc--------------------cccCHHHHHH
Confidence 2 7899999999999864 2888888863
No 36
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.18 E-value=2.2e-10 Score=98.44 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=108.1
Q ss_pred ChHHHHHHHHHHHHhhhCCceeEEEccCCCC----CeeEEEEeec--cccccccccccCChhHHHHhcccCceEccCCCc
Q 008720 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLN--NQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (556)
Q Consensus 158 ~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~ 231 (556)
+++++++.+++.+.+.+++++|+|+++++++ ..+......+ .....+..++...+.++.++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 4678899999999999999999999998764 4555443333 333455677888899999999999999998764
Q ss_pred hhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-CCCccccchHHHHHHHHHHHHHHHHHH
Q 008720 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~~~al~~a 310 (556)
+. +.++.+++| |..++..+|++.+.+. +++.|++++.+++..+|.+++++++++
T Consensus 81 d~-----------~~~s~l~vP--------------L~~~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLP--------------LRATDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEE--------------EEETTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEE--------------EccCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 467888999 5566778999999887 788999999999999999999999999
Q ss_pred HHHHHH
Q 008720 311 AILEDS 316 (556)
Q Consensus 311 ~~~~~~ 316 (556)
+.+++.
T Consensus 136 ~~~~~~ 141 (149)
T 2vjw_A 136 SSQRRM 141 (149)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877553
No 37
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.18 E-value=3.7e-10 Score=114.32 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=131.8
Q ss_pred hhhHHHHhHHHHHHHHHHHc-cCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhH
Q 008720 136 ILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~-~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (556)
.+++.++...+.+++..+.. ..+.+++++.+++.+.+.+++++|+||+.|+++..+...............+|...+.+
T Consensus 191 ~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T 1ykd_A 191 ATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchh
Confidence 34455667788999999999 99999999999999999999999999999988777766554332223334567788899
Q ss_pred HHHhcccCceEcc-CCCchhhhhhc---ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC------
Q 008720 215 TDVFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG------ 284 (556)
Q Consensus 215 ~~v~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~------ 284 (556)
+.++.+++++.++ +...+..+... ......+.++.+++|| ...++..+|++.+.+..
T Consensus 271 ~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl-------------~~~~~~~iGvl~l~~~~~~~~~~ 337 (398)
T 1ykd_A 271 GIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPV-------------FNGDQELIGVTQLVNKKKTGEFP 337 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEE-------------ECSSSCEEEEEEEEEECCSSCCC
T ss_pred hHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEee-------------ecCCCCEEEEEEEEecCCccccc
Confidence 9999999999998 77665544321 0111234677889994 22467789999888766
Q ss_pred --------------CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 285 --------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 285 --------------~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~ 318 (556)
++.|+++|.+++..+|.+++++|++++++++.++
T Consensus 338 ~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~ 385 (398)
T 1ykd_A 338 PYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQ 385 (398)
T ss_dssp CCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999877654
No 38
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.16 E-value=1.7e-11 Score=124.50 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=65.3
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChh
Q 008720 453 AVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 453 ~~~d~~~l~~vl~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
..+|+..|.+++.||+.||++|+..|+ +.+.+...+... .++.|+|+|||+|||++.++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~-----------------~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDAR-----------------QIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTT-----------------TEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcC-----------------cEEEEEEEECCCCCCHHHHH
Confidence 345789999999999999999997754 455444332100 14899999999999999999
Q ss_pred hhhccCcccCCCC--CCCCCCceeeeccc
Q 008720 529 LLFTKFAQSRGSS--CQTPRAGLGLAICR 555 (556)
Q Consensus 529 ~iF~~f~~~~~~~--~~~~G~GlGL~i~k 555 (556)
++|++|+++.... ...+|+|+||++|+
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~ 117 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAV 117 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHH
T ss_pred HHhcccccccccccccCCCCceeeHHHHH
Confidence 9999997665432 23358999999986
No 39
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.15 E-value=1.6e-11 Score=126.07 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
|+..|.+++.||+.||++|+..|+ +.+.+...+... .++.|+|+|||+|||++.++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~-----------------~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDAR-----------------QIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTT-----------------TEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcC-----------------ceEEEEEEECCCCCCHHHHHHHh
Confidence 448999999999999999998754 555544433100 14899999999999999999999
Q ss_pred ccCcccCCCC--CCCCCCceeeeccc
Q 008720 532 TKFAQSRGSS--CQTPRAGLGLAICR 555 (556)
Q Consensus 532 ~~f~~~~~~~--~~~~G~GlGL~i~k 555 (556)
++|+++.... ...+|+|+||++|+
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~ 116 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAV 116 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHH
T ss_pred ccccccCCcccccCCCCccchHHHHH
Confidence 9997665432 23368999999986
No 40
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.12 E-value=1e-09 Score=118.90 Aligned_cols=169 Identities=11% Similarity=0.088 Sum_probs=129.0
Q ss_pred HHHHhHHHHHHHHHHHc-cCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecc---ccccccccccCChhH
Q 008720 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIV 214 (556)
Q Consensus 139 ~~~~~~~l~~~~~~l~~-~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 214 (556)
+.++++.+.++++.+.+ ..+.+++++.+++.+.+.+++++|+|++.++ ..+......+. ....+..+|...+.+
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~--~~l~~~~~~g~~~~~~~~~~~~~~~~gi~ 253 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ--NELVAKVFDGGVVDDESYEIRIPADQGIA 253 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS--SEEEEECCSSSCCSSCCCEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC--CeEEEEeecCCcccccccceeccCCCCHH
Confidence 34677889999999988 7899999999999999999999999999997 33333222211 122344677788999
Q ss_pred HHHhcccCceEccCCCchhhhhhcc-cCCCCCcceeeeeccccccCccccCCCCCCcc-cceEEEEEeccCCCC-ccccc
Q 008720 215 TDVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLMLPTDGGR-KWRDH 291 (556)
Q Consensus 215 ~~v~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~~vl~~~~~~~~-~~~~~ 291 (556)
+.++.+++++.+++...+..+.... .....+.++.+++| +..+ +.++|++.+.+..++ .|+++
T Consensus 254 g~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vP--------------L~~~~g~viGVL~l~~~~~~~~f~~~ 319 (691)
T 3ibj_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFSKF 319 (691)
T ss_dssp HHHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEE--------------CCCSSSCCCEEEEEEEESSSSSCCTT
T ss_pred HHHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEe--------------EECCCCCEEEEEEEEECCCCCCCCHH
Confidence 9999999999999888776553211 11123456888999 4455 678999988876654 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 292 ELELIDVVADQVAVALSHAAILEDSMRARNQL 323 (556)
Q Consensus 292 e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~l 323 (556)
|.+++..+|.++++++++++++++.++.+.+.
T Consensus 320 d~~ll~~lA~~~aiAIena~l~~~l~~~~~~~ 351 (691)
T 3ibj_A 320 DEDLATAFSIYCGISIAHSLLYKKVNEAQYRS 351 (691)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887665443
No 41
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.12 E-value=1.1e-10 Score=103.89 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=119.5
Q ss_pred HHhHHHHHHHHHHHccC-ChHHHHHHHHHHHHhhhCCceeEEEccCCCCC--eeEEE-Ee--ecc-------cccccccc
Q 008720 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS-YT--LNN-------QIQIGSSV 207 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~~-~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~-~~--~~~-------~~~~~~~~ 207 (556)
+.++.+.++++.+.+++ +++++++.+++.+.+.+++++|+|+++|+++. .+... .. .+. .......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 45678999999999999 99999999999999999999999999997654 33322 11 111 11223457
Q ss_pred ccCChhHHHHhcccCceEccCCCchhhhhhccc-CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC
Q 008720 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR 286 (556)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~ 286 (556)
|...+.++.++.+++++.+++...+.++..... ......++.+++| +..++.++||+.+.+..+.
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vP--------------l~~~~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIP--------------ITQGKEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEE--------------EEETTEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEE--------------eccCCEEEEEEEEEeCCCC
Confidence 788899999999999999999887766542111 1123468899999 5556788999999877654
Q ss_pred -ccccchHHHHHHHHHHHHHHH
Q 008720 287 -KWRDHELELIDVVADQVAVAL 307 (556)
Q Consensus 287 -~~~~~e~~ll~~~a~~~~~al 307 (556)
.|++++.++++.+|.+++++|
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998
No 42
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.11 E-value=3.1e-09 Score=92.38 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=121.7
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhccc
Q 008720 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (556)
....+.++...+....|+++.++.++..+.+.+++++|.+|+.|+++..+.+....+. .....++...+.++.+..++
T Consensus 15 ~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~~~~~i~~geGi~G~v~~~g 92 (167)
T 3mmh_A 15 YREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--LACTRIPFGRGVCGQAWAKG 92 (167)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--CCCSEEETTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--ccceEeccCCChHHHHHhCC
Confidence 3456777777888899999999999999999999999999999987777776554443 23457888999999999999
Q ss_pred CceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHH
Q 008720 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (556)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~ 301 (556)
+++++++...++.+- ......++.+++| +..++.++||+.+.+..++.|+++|.++++.+|.
T Consensus 93 ~~~~v~Dv~~~p~~~----~~~~~~~S~i~vP--------------i~~~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~ 154 (167)
T 3mmh_A 93 GTVVVGDVDAHPDHI----ACSSLSRSEIVVP--------------LFSDGRCIGVLDADSEHLAQFDETDALYLGELAK 154 (167)
T ss_dssp SCEEESCGGGSTTCC----CSSTTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred cEEEECCcccCcchh----hcCccCCeEEEEE--------------eccCCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999999988776542 1234578889999 4457788999999998889999999999999999
Q ss_pred HHHHHH
Q 008720 302 QVAVAL 307 (556)
Q Consensus 302 ~~~~al 307 (556)
+++.++
T Consensus 155 ~la~~i 160 (167)
T 3mmh_A 155 ILEKRF 160 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999877
No 43
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.11 E-value=2.7e-10 Score=101.46 Aligned_cols=158 Identities=14% Similarity=0.033 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEE--Eeeccccc-cccccccCChhHHHHhcc
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS--YTLNNQIQ-IGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~v~~~ 220 (556)
..++++++.+.++.+++++++.+++.+.+.++++.|+|+++++++ .+... .+...... .....+...+.+..++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 357788899999999999999999999999999999999995444 33332 33222211 122333345789999999
Q ss_pred cCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccc-eEEEEEecc-CCCCccccchHHHHHH
Q 008720 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSY-AVMVLMLPT-DGGRKWRDHELELIDV 298 (556)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~-~~~vl~~~~-~~~~~~~~~e~~ll~~ 298 (556)
+++..+++................+..+.+.+| +..++. .+|++.+.+ ..++.|++++.+++..
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vP--------------l~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIP--------------ISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEE--------------ECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEE--------------EEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999876654431111111113456778888 445555 899999998 7888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008720 299 VADQVAVALSHAAILEDS 316 (556)
Q Consensus 299 ~a~~~~~al~~a~~~~~~ 316 (556)
+|.+++.++++++.+++.
T Consensus 148 la~~~a~al~~a~~~~~~ 165 (181)
T 2qyb_A 148 LAGQLAQAVKIVTEMEAK 165 (181)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988655443
No 44
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.10 E-value=2e-09 Score=107.65 Aligned_cols=165 Identities=10% Similarity=0.094 Sum_probs=126.0
Q ss_pred hHHHHhHHHHHHHHHHHcc-CChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEee---ccccccccccccCChh
Q 008720 138 TQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL---NNQIQIGSSVPINLPI 213 (556)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~-~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 213 (556)
+++++...+.++++.+.++ .+.+++++.+++.+.+.+++++|+|+++|++ .+...... ......+..+|...+.
T Consensus 175 ~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~ 252 (368)
T 1mc0_A 175 KLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGI 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSS--SEEEEEETTEECCCSTTCCEECTTSHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCC--ceEEEEeccccccccccceeecCCCce
Confidence 4455677899999999998 6999999999999999999999999999983 33333222 1223334567778889
Q ss_pred HHHHhcccCceEccCCCchhhhhhccc-CCCCCcceeeeeccccccCccccCCCCCCcc-cceEEEEEeccCCCC-cccc
Q 008720 214 VTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLMLPTDGGR-KWRD 290 (556)
Q Consensus 214 ~~~v~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~~vl~~~~~~~~-~~~~ 290 (556)
+..++.++++..+++...+..+..... ....+.++.+++| +..+ +..+|++.+.+..++ .|++
T Consensus 253 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------l~~~~~~~iGvl~l~~~~~~~~f~~ 318 (368)
T 1mc0_A 253 AGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFP--------------IKNENQEVIGVAELVNKINGPWFSK 318 (368)
T ss_dssp HHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEE--------------EECTTSCEEEEEEEEEETTSSSCCH
T ss_pred eeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEe--------------eECCCCcEEEEEEEEECCCCCCCCH
Confidence 999999999999998776654321100 0012246788888 4443 778999999877665 7999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 291 ~e~~ll~~~a~~~~~al~~a~~~~~~~~ 318 (556)
++.+++..+|.++++++++++++++.++
T Consensus 319 ~d~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 319 FDEDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.10 E-value=1.6e-09 Score=108.34 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccC
Q 008720 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (556)
.+.+.++++.+ +++|++++++.+++.+.+.+++++|+||++++++..+......+........+|...+.++.++.+++
T Consensus 13 ~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~ 91 (368)
T 1mc0_A 13 DRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ 91 (368)
T ss_dssp HHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred hHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcCC
Confidence 45577888888 88999999999999999999999999999998877665554433222223356777888999999999
Q ss_pred ceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcc--cceEEEEEeccCC-CCccccchHHHHHHH
Q 008720 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMVLMLPTDG-GRKWRDHELELIDVV 299 (556)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~~vl~~~~~~-~~~~~~~e~~ll~~~ 299 (556)
++.+++...+..... ......+.++.+++|+ ..+ +..+|++.+.... ++.|++.+.+++..+
T Consensus 92 ~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl--------------~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~l 156 (368)
T 1mc0_A 92 CIQLKDLTSDDVQQL-QNMLGCELQAMLCVPV--------------ISRATDQVVALACAFNKLGGDFFTDEDEHVIQHC 156 (368)
T ss_dssp CEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEE--------------ECTTTCSEEEEEEEEEESSCSSCCSHHHHHHHHH
T ss_pred eEEeccccccccccc-ccccCcccceEEEEEe--------------ecCCCCcEEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 999998877664221 1112234678888894 444 6789999866544 457999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008720 300 ADQVAVALSHAAILEDSMR 318 (556)
Q Consensus 300 a~~~~~al~~a~~~~~~~~ 318 (556)
|.+++.++.+++++++.++
T Consensus 157 a~~~~~al~~~~l~~~~~~ 175 (368)
T 1mc0_A 157 FHYTGTVLTSTLAFQKEQK 175 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776544
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.05 E-value=6.8e-10 Score=95.47 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=110.0
Q ss_pred ccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc--cccc-cccccCChhHHHHhcccCceEccCCCc
Q 008720 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (556)
Q Consensus 155 ~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~~~ 231 (556)
++++.+++++.+++.+.+.+++++|+|++.+++ ..+......+.. .... ..++...+.+..++.++++..+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 356788999999999999999999999999954 444443333222 1111 256667889999999999999988766
Q ss_pred hhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC-CccccchHHHHHHHHHHHHHHHHHH
Q 008720 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (556)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~a~~~~~al~~a 310 (556)
+..+..... ...+..+.+.+| +..++..+|++.+.+..+ +.|++++.+++..+|.+++.+++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vP--------------l~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVP--------------VRVRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEee--------------EEECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 554432211 234567788888 556778899999988776 7999999999999999999999999
Q ss_pred HHHHH
Q 008720 311 AILED 315 (556)
Q Consensus 311 ~~~~~ 315 (556)
+++++
T Consensus 147 ~l~~~ 151 (153)
T 2w3g_A 147 RLYQQ 151 (153)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 88765
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.03 E-value=4.1e-10 Score=96.96 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=102.2
Q ss_pred cCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhh
Q 008720 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (556)
Q Consensus 156 ~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 235 (556)
+.|++++++.+++.+.+.+++++|+|+++|+++ .+......+.+.... ..+...+.+..++.+++++++++...+..+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 358899999999999999999999999999876 555444433221100 112344567888999999999887665433
Q ss_pred hhc-ccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008720 236 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~ 314 (556)
... ......+.++.+.+| +..++..+|++.+....++.|++++.+++..+|.+++.++++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vP--------------l~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFP--------------LVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEE--------------EESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEec--------------eEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111112446778888 44577889999999988889999999999999999999998886543
No 48
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.00 E-value=1.7e-08 Score=101.94 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=121.7
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHH----HHhhhCCceeEEEccCCCCCeeEEEEeeccc-cccccccccCChhH
Q 008720 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 214 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~----l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 214 (556)
++.+..+.++...+.+ .+++++++.+++. +.+.+++++|+||++|+++..+......+.. ...+..+|...+.+
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 3455667777766754 7888766665555 8999999999999999888766655544322 22344677788999
Q ss_pred HHHhcccCceEccCCCch---hhhhhcc-cCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccC-------
Q 008720 215 TDVFNSAQAMRLPYNCPL---ARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 283 (556)
Q Consensus 215 ~~v~~~~~~~~l~~~~~~---~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~------- 283 (556)
+.++.+++++.+++...+ ..+.... .....+.++.+++|+ ...++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl-------------~~~~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPL-------------LSEQGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEE-------------ECSSCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEE-------------ECCCCCEEEEEEEeccCCccccc
Confidence 999999999999987765 4333211 111234567888885 3345678999988876
Q ss_pred --------CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 284 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 284 --------~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~ 319 (556)
.++.|++++.+++..+|.++++++++++++++..+.
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~ 194 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQK 194 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999887665443
No 49
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.98 E-value=1.1e-08 Score=91.16 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=122.0
Q ss_pred HHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhh-CCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHh
Q 008720 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVF 218 (556)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 218 (556)
+.....+.++...+....++++.++.+++.+.+.+ +++.|.+|+.+++ .+.+....+. .....++...+.++.+.
T Consensus 25 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~aa 100 (195)
T 1vhm_A 25 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTAV 100 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHHH
Confidence 33456788888889999999999999999999999 9999999999863 4444322222 23456788899999999
Q ss_pred cccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHH
Q 008720 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (556)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (556)
.+++++++++...++.+. ......++.+++| +..++.++||+.+.+..++.|++++.++++.
T Consensus 101 ~tg~~i~V~Dv~~~p~~~----~~~~~~~S~l~VP--------------I~~~g~viGVL~i~s~~~~~F~e~d~~~L~~ 162 (195)
T 1vhm_A 101 ARNQVQRIEDVHVFDGHI----ACDAASNSEIVLP--------------LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 162 (195)
T ss_dssp HHTSCEEESCTTTCTTCC----CSCCCCSEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHH
T ss_pred hcCCEEEECCcccCcchh----hcCCCccEEEEEe--------------EeECCEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999999988765432 1234568899999 4456788999999998888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008720 299 VADQVAVALSHAAI 312 (556)
Q Consensus 299 ~a~~~~~al~~a~~ 312 (556)
+|.+++.+++++..
T Consensus 163 lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 163 LVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 50
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.96 E-value=7.3e-09 Score=112.25 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=124.6
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcc
Q 008720 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (556)
++.+.+.++++.|+ .++++++++++++.+.+.+++++|+||++++++..+......+........+|.. +.++.++.+
T Consensus 12 e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~~ 89 (691)
T 3ibj_A 12 DRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVED 89 (691)
T ss_dssp THHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHHH
Confidence 34567899999999 9999999999999999999999999999998877765544333222222356777 899999999
Q ss_pred cCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcc--cceEEEEEeccC-CCCccccchHHHHH
Q 008720 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMVLMLPTD-GGRKWRDHELELID 297 (556)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~~vl~~~~~-~~~~~~~~e~~ll~ 297 (556)
++++.+++...+..+... .....+.++.+++|+ ..+ +..+|++.+... .++.|++++.+++.
T Consensus 90 ~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI--------------~~~~~g~viGvL~l~~~~~~~~ft~~d~~lL~ 154 (691)
T 3ibj_A 90 KKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPV--------------ISRATDQVVALACAFNKLEGDLFTDEDEHVIQ 154 (691)
T ss_dssp CCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEE--------------ECSSSCSEEEEEEEESBSSSCCCCTTHHHHHH
T ss_pred CCeEEeccchhccccccc-cccCCccceEEEEEe--------------EcCCCCcEEEEEEEEcCCCCCCCCHHHHHHHH
Confidence 999999998876643221 112234678889994 444 778999986655 45689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008720 298 VVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 298 ~~a~~~~~al~~a~~~~~~~ 317 (556)
.++.+++.++.++.++++..
T Consensus 155 ~la~~~a~al~~a~l~~~~~ 174 (691)
T 3ibj_A 155 HCFHYTSTVLTSTLAFQKEQ 174 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776543
No 51
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.94 E-value=1.8e-08 Score=84.72 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=99.4
Q ss_pred hHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCC-eeEEEEeeccccccccccccCChhHHH
Q 008720 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL-NLELSYTLNNQIQIGSSVPINLPIVTD 216 (556)
Q Consensus 138 ~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (556)
.+..+++.+.++++.| ..++.+++++.+++...+.+++++|.+|++|+++. ....+++... .......
T Consensus 9 ~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~~l~~~aa~G~~~-~l~~lr~--------- 77 (160)
T 3cit_A 9 SRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADNGVQTTARHGSKE-RLSTLET--------- 77 (160)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--CCCEEEEEESCHH-HHTTSCC---------
T ss_pred HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCCceeeeeccCchh-hhhhhhc---------
Confidence 4556888899999999 77888999999999999999999999999998532 2233333100 0000000
Q ss_pred HhcccCceEccCCCch-hhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCC-CCccccchHH
Q 008720 217 VFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELE 294 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~-~~~~~~~e~~ 294 (556)
+++.... +++. .......++.+++||. ...+..+|++.+.+.. ...|+++|.+
T Consensus 78 ---------~~~~~~~gpr~~---~~tg~~t~svl~vPL~-------------~~~g~~~Gvlql~N~~~~~~f~~eD~e 132 (160)
T 3cit_A 78 ---------TADPLAIGPQWL---ERPGTHLPCVLLLPLR-------------GADEGSFGTLVLANSVAISAPDGEDIE 132 (160)
T ss_dssp ---------CCCTTCCSCEEE---ECTTSSSCEEEEEEEE-------------CSSSSEEEEEEEEESSCCCCCCHHHHH
T ss_pred ---------cccccccccccc---cccCcccceeEEEeee-------------cCCCcEEEEEEEeccCCCCCCCHHHHH
Confidence 1111111 1111 1223346777888842 4566788998875544 5589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 295 LIDVVADQVAVALSHAAILEDSMRA 319 (556)
Q Consensus 295 ll~~~a~~~~~al~~a~~~~~~~~~ 319 (556)
.+..+|.+++.+++|++++++++.+
T Consensus 133 ~l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 133 SLQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543
No 52
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.93 E-value=1.4e-10 Score=120.73 Aligned_cols=84 Identities=23% Similarity=0.403 Sum_probs=62.6
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCC-C---eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChh
Q 008720 453 AVGDEKRLMQTILNIVGNAVKFTKE-G---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 453 ~~~d~~~l~~vl~nLl~NAik~~~~-g---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~ 528 (556)
+.+|+..|.+++.||+.||++|+.. | .+.+.+.....+ ++.|+|+|||+|||++.++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 4569999999999999999999874 3 344433332212 4899999999999999999
Q ss_pred hhhccCcccCCC---CCCCCCCceeeeccc
Q 008720 529 LLFTKFAQSRGS---SCQTPRAGLGLAICR 555 (556)
Q Consensus 529 ~iF~~f~~~~~~---~~~~~G~GlGL~i~k 555 (556)
++|++|+++..- ....+|+|+||++|+
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~ 121 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAV 121 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHH
T ss_pred HHhhhhccCCccccccccCCCceechhhhh
Confidence 999888655321 122358999999986
No 53
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.88 E-value=1.7e-08 Score=89.00 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecc---ccccccccccCC--hhHHHH----------------
Q 008720 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINL--PIVTDV---------------- 217 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~v---------------- 217 (556)
++++++++++.+.+.+++|+|.||++++++........... +...+..+|... ......
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 36789999999999999999999999987665555444332 112233333321 112222
Q ss_pred --------hcccCceEccCCCchhhhh-hcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCcc
Q 008720 218 --------FNSAQAMRLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (556)
Q Consensus 218 --------~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (556)
..+++++.+++......+. ........+.++.+++| +..++..+|++.+++..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVP--------------LMHHQELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECC--------------CSCSSCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEE--------------EEECCEEEEEEEEEeCCCCCC
Confidence 2334444444433221110 00111134567778888 556677799999988899999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Q 008720 289 RDHELELIDVVADQVAVALSHAAIL 313 (556)
Q Consensus 289 ~~~e~~ll~~~a~~~~~al~~a~~~ 313 (556)
+++|++++..+|.+++++++++++|
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999876
No 54
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.87 E-value=2.4e-08 Score=96.39 Aligned_cols=160 Identities=12% Similarity=0.034 Sum_probs=109.2
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHH
Q 008720 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (556)
+..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....... ..|..+|..+ .....
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 4567789999999999999999999999999999999999999999988777776655443 3344444322 22344
Q ss_pred HhcccCceEccCCCchhh---------------hhhcccCCC----------CCcceeeeeccccccCccccCCCCCCcc
Q 008720 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAK 271 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~~~---------------~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (556)
.+..++...+.|...... +........ .+-++.+.+| +..+
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvp--------------I~~~ 289 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSIS--------------IVRD 289 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EEET
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEE--------------EEEC
Confidence 555566656655443210 000000000 1223445555 3344
Q ss_pred cceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008720 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~ 314 (556)
+...|++..+...+|.|+..++++++.+|.+++++|.++..++
T Consensus 290 ~~LWGLl~~Hh~~pR~w~~~e~~~~e~la~~l~iai~q~e~~~ 332 (337)
T 2ool_A 290 NRLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQIGVLEEAE 332 (337)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777766666999999999999999999999997665443
No 55
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.86 E-value=1.1e-07 Score=96.72 Aligned_cols=161 Identities=7% Similarity=-0.011 Sum_probs=112.1
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHH
Q 008720 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (556)
+..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....... ..|..+|..+ .....
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 3556789999999999999999999999999999999999999999987777766655432 3344444422 23355
Q ss_pred HhcccCceEccCCCchhh---------------hhhcccCCC----------CCcceeeeeccccccCccccCCCCCCcc
Q 008720 217 VFNSAQAMRLPYNCPLAR---------------IRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAK 271 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~~~---------------~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (556)
.+..+....++|...... ++....... .+-++.+.+| +..+
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvp--------------I~~~ 267 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSIS--------------IVVG 267 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EECS
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEE--------------EEEC
Confidence 566666666666554310 000000000 1224445555 3444
Q ss_pred cceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (556)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~ 315 (556)
+...|++.++...++.|+..++++++.++.+++++|.++..+++
T Consensus 268 ~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 268 GKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp SSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777679999999999999999999999987765544
No 56
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.85 E-value=3.8e-08 Score=93.77 Aligned_cols=154 Identities=8% Similarity=0.004 Sum_probs=108.2
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHHH
Q 008720 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTDV 217 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~v 217 (556)
..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....+.. ..|..+|..+ ......
T Consensus 132 ~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~l 211 (327)
T 4e04_A 132 FFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRL 211 (327)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHH
Confidence 356788999999999999999999999999999999999999999998877776665543 3344444422 233455
Q ss_pred hcccCceEccCCCchhh---------------hhhcccCCC----------CCcceeeeeccccccCccccCCCCCCccc
Q 008720 218 FNSAQAMRLPYNCPLAR---------------IRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (556)
Q Consensus 218 ~~~~~~~~l~~~~~~~~---------------~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (556)
+..++...++|...... ++....... .+-++.+.+| +..++
T Consensus 212 y~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvp--------------I~~~~ 277 (327)
T 4e04_A 212 YTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSIS--------------ILRGE 277 (327)
T ss_dssp HHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEE--------------EEETT
T ss_pred HHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEE--------------EEECC
Confidence 66666666666543210 000000000 1234445555 34445
Q ss_pred ceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHH
Q 008720 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (556)
Q Consensus 273 ~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~ 309 (556)
...|++..+..++|.|+..++++++.+|.+++++|.+
T Consensus 278 ~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~ 314 (327)
T 4e04_A 278 RLWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGV 314 (327)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777899999999999999999999999953
No 57
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.82 E-value=3.7e-08 Score=94.11 Aligned_cols=157 Identities=5% Similarity=-0.021 Sum_probs=109.6
Q ss_pred HHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHH
Q 008720 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTD 216 (556)
Q Consensus 141 ~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 216 (556)
+..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....... ..|..+|..+ .....
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 3466789999999999999999999999999999999999999999998887776665543 2333444321 23355
Q ss_pred HhcccCceEccCCCchhh-h---------hhcccC-----CC----------CCcceeeeeccccccCccccCCCCCCcc
Q 008720 217 VFNSAQAMRLPYNCPLAR-I---------RLLVGR-----YV----------PPDIVAVRVPLLHLSNFQINDWPELPAK 271 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~~~-~---------~~~~~~-----~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (556)
.+..++...+.|...... + .+.... .. .+-++.+.+| +..+
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvp--------------I~~~ 294 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVS--------------VVVG 294 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEE--------------EEET
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEE--------------EEEC
Confidence 556666666665544311 0 000000 00 1234445555 3344
Q ss_pred cceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHH
Q 008720 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (556)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~ 311 (556)
+...|++..+...+|.|+..++++++.+|.+++++|.+..
T Consensus 295 ~~LWGLL~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~~ 334 (343)
T 3s7o_A 295 GQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKE 334 (343)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEcCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788999999999999999999999995443
No 58
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.82 E-value=1.4e-07 Score=96.08 Aligned_cols=161 Identities=10% Similarity=0.016 Sum_probs=112.4
Q ss_pred HhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHHH
Q 008720 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTDV 217 (556)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~v 217 (556)
..+.+.+++..|+++++++++++++++++++.+++|||.||.+++++.....+....... ..|..+|..+ ......
T Consensus 136 ~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~l 215 (520)
T 3zq5_A 136 FYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRL 215 (520)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHH
Confidence 355788999999999999999999999999999999999999999988777766655432 3344444422 223555
Q ss_pred hcccCceEccCCCchhh-h---------hhccc-----CC----------CCCcceeeeeccccccCccccCCCCCCccc
Q 008720 218 FNSAQAMRLPYNCPLAR-I---------RLLVG-----RY----------VPPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (556)
Q Consensus 218 ~~~~~~~~l~~~~~~~~-~---------~~~~~-----~~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (556)
+..++...++|...... + .+... .. ..+-++.+.+| +..++
T Consensus 216 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvp--------------I~~~~ 281 (520)
T 3zq5_A 216 FIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTIS--------------LIKDG 281 (520)
T ss_dssp HHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEE--------------EEETT
T ss_pred HHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEe--------------EEECC
Confidence 56666666666543211 0 00000 00 12224455555 34455
Q ss_pred ceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDS 316 (556)
Q Consensus 273 ~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~ 316 (556)
...|++.++...++.|+..++++++.++.+++++|.++..+++.
T Consensus 282 ~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~~~~~ 325 (520)
T 3zq5_A 282 HLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETF 325 (520)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777899999999999999999999999877665443
No 59
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.75 E-value=1.8e-07 Score=82.67 Aligned_cols=145 Identities=6% Similarity=0.007 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhh-----CCceeEEEccCCCC-CeeEEEEeeccccccccccccCChhHHHH
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 217 (556)
..+.++...+....+..+.++.+++.+.+.+ +++.|.+|+.++++ ..+.+....+ ......++...+.++.+
T Consensus 27 ~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g--~~~~~~i~~g~Gi~G~a 104 (180)
T 1f5m_A 27 QLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQG--KVACQMIQFGKGVCGTA 104 (180)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEE--SCCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCC--CccceeecCCCcchhhh
Confidence 4566777778888899999999999999999 89999999998754 4555432221 22245678889999999
Q ss_pred hcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHH
Q 008720 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (556)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (556)
..+++++++++...+..+. ....+.++.+++|+ ...++.++||+.+++..++.|++++.++++
T Consensus 105 a~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi-------------~~~~g~viGVL~l~s~~~~~F~~~d~~~L~ 167 (180)
T 1f5m_A 105 ASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPI-------------ISNDGKTLGVIDIDCLDYEGFDHVDKEFLE 167 (180)
T ss_dssp HHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEE-------------ECTTSCEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred hhcCCEEEeCCcccCcccc----ccCcccceEEEEEE-------------EcCCCeEEEEEEeccCCCCCcCHHHHHHHH
Confidence 9999999999988776553 22346688899995 332778899999999888899999999999
Q ss_pred HHHHHHHHHH
Q 008720 298 VVADQVAVAL 307 (556)
Q Consensus 298 ~~a~~~~~al 307 (556)
.+|.+++.++
T Consensus 168 ~la~~~a~~~ 177 (180)
T 1f5m_A 168 KLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 60
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.73 E-value=1.4e-07 Score=81.56 Aligned_cols=142 Identities=6% Similarity=-0.012 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhC-CceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccC
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (556)
..+.++..-+....|+...+..++..+.+.++ ++.|.+|+.+++ .+.+....+. .....++...+.++.+..+++
T Consensus 18 ~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg~ 93 (171)
T 3rfb_A 18 MLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHFQE 93 (171)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhhCC
Confidence 34556666677788999999999999999997 999999999853 4444333222 234578889999999999999
Q ss_pred ceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHH
Q 008720 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (556)
++++++....+.+- ......++.+++| +..++.++||+.+.+...+.|+++|.++++.+|.+
T Consensus 94 ~i~V~Dv~~~p~~i----~~~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 94 TVIVGDVTTYLNYI----SCDSLAKSEIVVP--------------MMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp CEEESCTTSCSSCC----CSCTTCCEEEEEE--------------EEETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCcccc----ccCcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 99999998876542 1234567889999 45567889999999988889999999999999999
Q ss_pred HHHHH
Q 008720 303 VAVAL 307 (556)
Q Consensus 303 ~~~al 307 (556)
++.++
T Consensus 156 la~~~ 160 (171)
T 3rfb_A 156 LLEKT 160 (171)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 98654
No 61
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.67 E-value=2.5e-07 Score=79.18 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=111.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhhhC-CceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHHHhcccCc
Q 008720 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (556)
Q Consensus 145 ~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (556)
.+.++..-+.+..|+...+..++..+.+.++ ++.|.+|+.+++ .+.+....+. .....++...+.++.+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~--~a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGH--PACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCC--cccEEeeCCCCHHHHHHhhCCE
Confidence 3445555566678999999999999999997 999999999854 3444333222 2345788899999999999999
Q ss_pred eEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHH
Q 008720 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (556)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~ 303 (556)
+++++....+.+-. .....++.+++| +..++.++||+.+.+..++.|+++|.++++.+|.++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VP--------------I~~~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVP--------------IFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEE--------------EEETTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEE--------------EEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999888765421 123567889999 455678899999999888899999999999999999
Q ss_pred HHHH
Q 008720 304 AVAL 307 (556)
Q Consensus 304 ~~al 307 (556)
+..+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7554
No 62
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.59 E-value=2.3e-07 Score=73.50 Aligned_cols=147 Identities=12% Similarity=0.202 Sum_probs=111.4
Q ss_pred HHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccc---ccccc---ccCChhHHHHhcccCceEc
Q 008720 153 IRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ---IGSSV---PINLPIVTDVFNSAQAMRL 226 (556)
Q Consensus 153 l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~~~~~~l 226 (556)
+..-.|.+++.+..++.+.++.++.-.++|+.|.+.+.+.-+.+.+-+.. .-..+ |..-+.+...++..+.+.+
T Consensus 8 ~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll~ 87 (162)
T 3eea_A 8 LSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLML 87 (162)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEEE
T ss_pred HhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcccc
Confidence 34456899999999999999999999999999999988888777664421 11223 3356788999999998888
Q ss_pred cCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCC-ccccchHHHHHHHHHHHHH
Q 008720 227 PYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVAV 305 (556)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~~ll~~~a~~~~~ 305 (556)
++.....-++. ...........+.+| +..|+.++|++++.+...+ .|+++|..++..+|++.|+
T Consensus 88 ~dp~~s~l~tp-~l~k~~~~~~ILgVP--------------L~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAAI 152 (162)
T 3eea_A 88 TDPGSSDLLTP-KLRKLLRNLCVLAVP--------------MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAAL 152 (162)
T ss_dssp SCGGGCTTSCH-HHHHHTTTEEEEEEE--------------EEETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhccH-HHHHHHhhCeEEEec--------------ceeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHH
Confidence 76544322221 122224456677888 7788899999999998888 9999999999999999999
Q ss_pred HHHHHHHHH
Q 008720 306 ALSHAAILE 314 (556)
Q Consensus 306 al~~a~~~~ 314 (556)
+++++++++
T Consensus 153 AIdnArLld 161 (162)
T 3eea_A 153 VVSHMQLFD 161 (162)
T ss_dssp HHHHHHTC-
T ss_pred HHHHhhhhc
Confidence 999998765
No 63
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.53 E-value=7.3e-08 Score=93.75 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||+++.. +.+.+.+.. ++. ..|+|.|||+||+++.++.+|++|++++
T Consensus 24 ~~~~~v~ELi~NaidA~a-~~I~I~i~~-~~~--------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA-TRIDIDIER-GGA--------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEEG-GGT--------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCCC-CeEEEEEEe-CCc--------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 468999999999999874 455555432 221 4799999999999999999999999876
Q ss_pred CCC-------CCCCCCceeeecc
Q 008720 539 GSS-------CQTPRAGLGLAIC 554 (556)
Q Consensus 539 ~~~-------~~~~G~GlGL~i~ 554 (556)
... ...++.|+||+.+
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si 104 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASI 104 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHH
T ss_pred ccccchhhhccccCccccchhhh
Confidence 422 1234589999764
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.49 E-value=1.5e-08 Score=112.55 Aligned_cols=171 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCC--eeEE------EEeeccc--cccccc
Q 008720 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLEL------SYTLNNQ--IQIGSS 206 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~------~~~~~~~--~~~~~~ 206 (556)
+++.+++..+.+++..+.++++++++++.+++.+.+.+++++|+||++++++. .... ..+.... ...+..
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 34556777899999999999999999999999999999999999999997743 2111 1121111 123345
Q ss_pred cccCChhHHHHhcccCceEccCCCchhhhhhcccC-CCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCC
Q 008720 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (556)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 285 (556)
+|...+.++.++.+++++.+++...+..+...... ...+.++.+++|+ ...++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL-------------~~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPI-------------KNHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEee-------------EcCCCCEEEEEEEEecCC
Confidence 67778889999999999999988776655422111 1233566777774 333677899999887664
Q ss_pred C---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 286 R---KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (556)
Q Consensus 286 ~---~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~ 320 (556)
+ .|+++|.+++..+|.++++++.++.+++...+.+
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~ 330 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLEN 330 (878)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 8999999999999999999999999887665443
No 65
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.44 E-value=1.5e-07 Score=90.96 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||+++.. +.+.+.+. .++. ..|+|.|||+|||++.++++|+||+++|
T Consensus 28 ~~~~vv~eLv~NAidA~a-~~I~I~i~--~~~~-------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKS-TSIQVIVK--EGGL-------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEE--GGGT-------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcCC-CEEEEEEE--eCCE-------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 467999999999999854 45555543 2221 5799999999999999999999999987
Q ss_pred CCC
Q 008720 539 GSS 541 (556)
Q Consensus 539 ~~~ 541 (556)
...
T Consensus 86 ~~~ 88 (348)
T 3na3_A 86 LQS 88 (348)
T ss_dssp CCC
T ss_pred cCc
Confidence 653
No 66
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.44 E-value=2.5e-08 Score=110.75 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred HhhhHHHHhHHHHHHHHHHH-ccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEE-ee-ccc--------ccc
Q 008720 135 LILTQEETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TL-NNQ--------IQI 203 (556)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~l~-~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~-~~~--------~~~ 203 (556)
..+++.++...+.+++..+. ++.+++++++.+++.+.+.+++++|+|++.++++..+.... .+ ... ...
T Consensus 325 ~~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~ 404 (878)
T 3bjc_A 325 TSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTRE 404 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhcccccccccccccccc
Confidence 34444555667777888874 45799999999999999999999999999998765443321 11 110 011
Q ss_pred ccccccCChhHHHHhcccCceEccCCCchhhhhhcccCC-C---CCcceeeeeccccccCccccCCCCCCcc--cceEEE
Q 008720 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY-V---PPDIVAVRVPLLHLSNFQINDWPELPAK--SYAVMV 277 (556)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~pl~~~~~~~~~~~~~l~~~--~~~~~v 277 (556)
...+|...+.++.+..+++++.+++...+..+....... . .+.++.+++|| ..+ +.++|+
T Consensus 405 ~~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL--------------~~~~~g~viGV 470 (878)
T 3bjc_A 405 HDANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPI--------------KNGKKNKVIGV 470 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEE--------------ecCCCCcEEEE
Confidence 345666778889999999999998877666553221111 1 23567777784 333 678999
Q ss_pred EEeccCCC------CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 278 LMLPTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (556)
Q Consensus 278 l~~~~~~~------~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~~~~~~ 322 (556)
+.+.+..+ +.|++.+.++++.+|.+++++|++++++++.++..++
T Consensus 471 L~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 471 CQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp ---------------------------------------------------
T ss_pred EEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877654 6999999999999999999999999999988775544
No 67
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.43 E-value=8.7e-08 Score=94.03 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||+++.. +.+.+.+.. .+. ..|+|.|||+||+++.++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~~-~~~--------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLKD-YGV--------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEEG-GGT--------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEe-CCc--------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 478999999999999864 455554432 221 5799999999999999999999999876
Q ss_pred CCCCC------CCCC-ceeeec
Q 008720 539 GSSCQ------TPRA-GLGLAI 553 (556)
Q Consensus 539 ~~~~~------~~G~-GlGL~i 553 (556)
..... ..|. |+||+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~s 113 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSS 113 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHH
T ss_pred cccccchhcccccCCCCchhhh
Confidence 54210 1243 888764
No 68
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.41 E-value=3.9e-06 Score=89.45 Aligned_cols=160 Identities=10% Similarity=0.025 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeecccc--ccccccccCC--hhHHHHhc
Q 008720 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINL--PIVTDVFN 219 (556)
Q Consensus 144 ~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~v~~ 219 (556)
..+..+...|+++++++++++++++++++++++|||.||.+++++.....+....+.. ..|..+|..+ ......+.
T Consensus 132 ~~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 211 (635)
T 4eho_A 132 GTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYE 211 (635)
T ss_dssp TTSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHH
Confidence 3456677889999999999999999999999999999999999998887776655443 2344444432 23455555
Q ss_pred ccCceEccCCCchhh---------------hhhcccCCCC----------CcceeeeeccccccCccccCCCCCCcccce
Q 008720 220 SAQAMRLPYNCPLAR---------------IRLLVGRYVP----------PDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (556)
Q Consensus 220 ~~~~~~l~~~~~~~~---------------~~~~~~~~~~----------~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (556)
.+....+.|...... ++........ +-++.+.+| +..++..
T Consensus 212 ~~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vp--------------i~~~~~L 277 (635)
T 4eho_A 212 RQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVS--------------LVVGGKL 277 (635)
T ss_dssp HSCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEE--------------EEETTEE
T ss_pred cCCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEE--------------EEEccee
Confidence 555555555432110 0000000111 123445555 4445666
Q ss_pred EEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008720 275 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (556)
Q Consensus 275 ~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~~~~ 317 (556)
.|++.++...++.|+..++.+++.++.++++++.++..+++.+
T Consensus 278 WGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 320 (635)
T 4eho_A 278 WGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQSQ 320 (635)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHHHH
Confidence 7778888778999999999999999999999998877665543
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.37 E-value=3.3e-06 Score=74.68 Aligned_cols=143 Identities=11% Similarity=0.048 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccccccceeHHHHHHH
Q 008720 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (556)
Q Consensus 346 ~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (556)
+.++...||+.|-|++|.|++++-. -++..+|+..+....+.. . .+.++. .-.+..++
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~---~----~~~~i~---------~P~la~lL-- 80 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHE---S----KLSNLK---------TPHLAFDF-- 80 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHH---H----HHHTTT---------CHHHHHHH--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHH---H----HHHhCC---------CHHHHHHH--
Confidence 3445569999999999999988732 234444544444433322 1 122211 11122222
Q ss_pred HHHHHHHhhhcCCceEEEE-eCCCCCceEEccHHHHHHHHHHHHHHHhhc--C--CCCeEEEEEEeec-CCCCCCCCCCC
Q 008720 426 VIKLIKPVASCKKLSMTLI-MAPELPTYAVGDEKRLMQTILNIVGNAVKF--T--KEGYVSIIASVAK-PESLSDWRPPE 499 (556)
Q Consensus 426 ~~~~~~~~~~~~~i~i~~~-~~~~~~~~~~~d~~~l~~vl~nLl~NAik~--~--~~g~~~i~~~~~~-~~~~~~~~~~~ 499 (556)
-.. ....+++.+.++ +++... ....+..+..++.|+ .||+.+ . .++.+.+.+.... ++
T Consensus 81 --l~K--~~~a~e~~i~lev~~~~s~--l~~~~~~lgnLi~na-~~Ai~~~~~~~~~~~I~i~i~~~~~~~--------- 144 (192)
T 1ixm_A 81 --LTF--NWKTHYMTLEYEVLGEIKD--LSAYDQKLAKLMRKL-FHLFDQAVSRESENHLTVSLQTDHPDR--------- 144 (192)
T ss_dssp --HHG--GGSCCSSEEEEEEESSCCC--CTTTHHHHHHHHHHH-HHHHHHHBCTTSCCEEEEEEECCCSSS---------
T ss_pred --HHH--HHHhccCCeEEEEecCccc--cCCCcHHHHHHHHHH-HHHHHhhhccCCCCeEEEEEEEecCCC---------
Confidence 111 223466777763 333221 111333443333222 444433 1 2344454444431 22
Q ss_pred CCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcc
Q 008720 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 536 (556)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~ 536 (556)
.+.|.|.|+|+||+++.+++||++.++
T Consensus 145 ----------~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 145 ----------QLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp ----------SCEEEEEEESCBSCGGGCC--------
T ss_pred ----------EEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 289999999999999999999986654
No 70
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.23 E-value=1.1e-06 Score=87.14 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=54.5
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh----
Q 008720 454 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (556)
Q Consensus 454 ~~d~~~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~---- 529 (556)
.++...+.+++.|++.||+++ ..+.+.+.+. .+ -.|+|.|||+|||++..++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~--~~---------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN--ED---------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC--TT---------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE--cC---------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 357778888888888888874 2344444432 11 1599999999999999887
Q ss_pred ----hhccCcccCCC-----CCCCCCCceeeeccc
Q 008720 530 ----LFTKFAQSRGS-----SCQTPRAGLGLAICR 555 (556)
Q Consensus 530 ----iF~~f~~~~~~-----~~~~~G~GlGL~i~k 555 (556)
+|++++++..- ....++.|+||++|+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~ 121 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 121 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeec
Confidence 99988765321 112246899999875
No 71
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.7e-06 Score=84.49 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhhccCcccC
Q 008720 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF~~f~~~~ 538 (556)
.+.+++.||+.||+++. ...+.+.+ .+++. ..|+|+|||+|||++.++.+|++|+++|
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i--~~~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIF--KDYGL-------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEE--ETTTT-------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEE--EeCCE-------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 46799999999999986 34555544 22222 5899999999999999999999999887
Q ss_pred CC
Q 008720 539 GS 540 (556)
Q Consensus 539 ~~ 540 (556)
..
T Consensus 83 ~~ 84 (367)
T 3h4l_A 83 IA 84 (367)
T ss_dssp --
T ss_pred CC
Confidence 54
No 72
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.11 E-value=1.7e-05 Score=63.77 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 330 LDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 330 l~~~~~~~~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
+......+++..+.+.+|++.++||++||++.+.++++.+.+. .....+.+...++++..+++++++|.
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 46 IERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333444444555677899999999999999999999987542 23445889999999999999999873
No 73
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=97.83 E-value=1.3e-05 Score=80.36 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~----~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+...+..++.||++||++|+. .|.+.+.+....++ .+.++|+|+|+|+|+.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~------ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHR------ 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCC------
Confidence 446788999999999999982 46666666554232 3999999999999876
Q ss_pred ccCcccCCCCCCCCCCceeeecccC
Q 008720 532 TKFAQSRGSSCQTPRAGLGLAICRR 556 (556)
Q Consensus 532 ~~f~~~~~~~~~~~G~GlGL~i~k~ 556 (556)
.. ..+.|+||+++++
T Consensus 349 ----~~------~~~~G~GL~lv~~ 363 (399)
T 3ke6_A 349 ----DG------ARGRGRGLAMAEA 363 (399)
T ss_dssp ------------------CHHHHHT
T ss_pred ----CC------CCCCCcHHHHHHH
Confidence 01 1356899998874
No 74
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.53 E-value=0.00042 Score=55.37 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008720 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (556)
Q Consensus 338 ~~~~~~~~~l~~~i~Hel~~pL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~ 403 (556)
....+.+.+++..++|++++|++.+.+.++.+... ..+..+.+...+.++..+++++++++
T Consensus 54 ~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 54 KQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344467899999999999999999999877543 24667788899999999999998765
No 75
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.44 E-value=8.7e-05 Score=73.26 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCCCC--------hhhhhccCcccCCC---CCC-CCC-Cceeeecc
Q 008720 512 RVQVNDSGCGVPPQD--------IPLLFTKFAQSRGS---SCQ-TPR-AGLGLAIC 554 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~--------~~~iF~~f~~~~~~---~~~-~~G-~GlGL~i~ 554 (556)
.|+|.|||+|||.+. .+.+|..+..+..- ... ..| .|.||+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v 119 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHH
Confidence 489999999999998 57789887654211 111 123 78888765
No 76
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.44 E-value=2.8e-05 Score=70.76 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+|+.||+++.. .+.+.+.+....+. ..|.|.|||+||++++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 578899999999864 13333433333222 3689999999999999
Q ss_pred hhhhhccCc
Q 008720 527 IPLLFTKFA 535 (556)
Q Consensus 527 ~~~iF~~f~ 535 (556)
+.+.|..+.
T Consensus 89 l~~~l~~ia 97 (220)
T 2wer_A 89 LINNLGTIA 97 (220)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHhHh
Confidence 877775543
No 77
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.26 E-value=3.6e-05 Score=70.62 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||+||++++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 578999999999862 22233333333332 2599999999999999
Q ss_pred hhhhhccCcc
Q 008720 527 IPLLFTKFAQ 536 (556)
Q Consensus 527 ~~~iF~~f~~ 536 (556)
+...|..+.+
T Consensus 110 l~~~~~~ia~ 119 (235)
T 2ior_A 110 VIDHLGTIAK 119 (235)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHHHHcc
Confidence 9887755543
No 78
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.25 E-value=0.00023 Score=70.19 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhcCC---CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh--------
Q 008720 459 RLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI-------- 527 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~-------- 527 (556)
-+..++.+++.||++..- .+.+.+.+ ..++ .|+|.|||+|||.+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i--~~~g---------------------~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTTSSBHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEE--eCCC---------------------EEEEEECCCCcccCcccccCcchH
Confidence 678888888888888742 33333333 2222 4899999999999984
Q ss_pred hhhhccCcccCCC---CCC-CCC-Cceeeecc
Q 008720 528 PLLFTKFAQSRGS---SCQ-TPR-AGLGLAIC 554 (556)
Q Consensus 528 ~~iF~~f~~~~~~---~~~-~~G-~GlGL~i~ 554 (556)
+-+|.....+..- ... ..| .|.||+.|
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~v 122 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 122 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHH
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHH
Confidence 3477755443211 111 123 68887754
No 79
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=97.22 E-value=0.00078 Score=54.79 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccc-cccccccccCChhHHHHhcccCceEccCCCchhhhhhccc
Q 008720 162 ILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG 240 (556)
Q Consensus 162 il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~ 240 (556)
..+..++.+.+.+++ .++| +++...+++..... ...+ -++ .+.+.+++.+++..+..+..... .+.
T Consensus 3 ~a~~~AeiI~~~~~~-aV~I-----tD~~~ilA~~G~g~~~~~~--~~i-s~~~~~~i~~~k~~~~~~~~~~~----~~~ 69 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLI-----CDRDVYIAVSGSSKKDYLN--KSI-SEMLERTMDQRSSVLESDAKSVQ----LVN 69 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEE-----ECSSBEEEEESSCHHHHBT--CBB-CHHHHHHHHHCSCEEESSCEEEE----SBT
T ss_pred HHHHHHHHHHHHHCC-eEEE-----EcCccEEEEEecChhhcCC--Ccc-CHHHHHHHHcCCEEEEcCCcccc----ccC
Confidence 357889999999999 8888 66665566654322 2222 355 67789999999999886544211 011
Q ss_pred CCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008720 241 RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 241 ~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~ 308 (556)
...++..+.+.+| +..++.++|++.++ ...+.+++.+.++.+.+|..++.+++
T Consensus 70 ~~~~~~~s~ii~P--------------I~~~g~viG~i~l~-~~~~~~~~~~~~la~gla~lls~Qme 122 (123)
T 2w1r_A 70 GIDEDMNSYTVGP--------------IVANGDPIGAVVIF-SKDQTMGEVEHKAVETAAGFLARQME 122 (123)
T ss_dssp TCEEEESEEEEEE--------------EEETTEEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC----
T ss_pred CCCCCeeEEEEEE--------------EEECCEEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3334567888999 56677889999988 44456999999999999999987764
No 80
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.07 E-value=0.00012 Score=68.00 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||+||+++.
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 478899999998764 13344444333322 3689999999999999
Q ss_pred hhhhhccCc
Q 008720 527 IPLLFTKFA 535 (556)
Q Consensus 527 ~~~iF~~f~ 535 (556)
+...|..+.
T Consensus 131 L~~~l~~ia 139 (264)
T 1yc1_A 131 LINNLGTIA 139 (264)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHhhc
Confidence 876665543
No 81
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.77 E-value=0.0011 Score=58.86 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCC---CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 461 ~~vl~nLl~NAik~~~---~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..++.+|+.||+++.. ...+.+.+ ..+. .|+|.|||+|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g---------------------~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC---------------------EEEEEECCCCcCcccc
Confidence 7888999999998832 33344433 2221 4999999999999874
No 82
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.60 E-value=0.00061 Score=62.36 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEecCCCCCCCChhhhhccCc
Q 008720 512 RVQVNDSGCGVPPQDIPLLFTKFA 535 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~f~ 535 (556)
.|.|.|||+||+++++.+.|...-
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia 103 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIA 103 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC-
T ss_pred EEEEEECCcCCCHHHHHHHHhhhc
Confidence 689999999999999877775543
No 83
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.56 E-value=0.00031 Score=63.60 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCCCChhhhhccC
Q 008720 512 RVQVNDSGCGVPPQDIPLLFTKF 534 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~f 534 (556)
.|.|.|||+||+++.+..-|...
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~i 102 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTI 102 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSC
T ss_pred EEEEEeCCCCCCHHHHHHHHHhh
Confidence 68999999999999886655443
No 84
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.46 E-value=0.0031 Score=62.14 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhcC---C-CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 457 EKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 457 ~~~l~~vl~nLl~NAik~~---~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
..-|..++.+++.||++.. + ...+.+.+ ..++. .|+|.|||+|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i--~~~~~--------------------~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTI--DPENN--------------------LISIWNNGKGIPVVE 101 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE--ETTTT--------------------EEEEEEESSCCCCSE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEE--ECCCC--------------------EEEEEECCCcccCcc
Confidence 3568899999999999986 1 23333333 22211 599999999999987
No 85
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.43 E-value=0.0012 Score=64.60 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhhhh
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~iF 531 (556)
+..-+..++.+++.||++..-.| ...|.+....+. .|+|.|||+|||. +-+|
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g---------------------~I~V~DnGrGIp~---e~v~ 79 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG---------------------SIALFCTSRTVTA---ENLV 79 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEEEESSCCH---HHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC---------------------EEEEEECCCCcCH---hHee
Confidence 55679999999999999973222 222333322222 4999999999998 5566
No 86
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=96.40 E-value=0.0024 Score=57.40 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC---CeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 458 KRLMQTILNIVGNAVKFTKE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~---g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
.-|..++.+++.||++..-. ..+.+.+ ..+. .|+|.|||+|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g---------------------~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIH 83 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCC---------------------cEEEEECCcCcccccc
Confidence 46888899999999987422 3333332 2222 4899999999999874
No 87
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=96.38 E-value=0.0035 Score=55.40 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHHhhcC--C-CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 456 DEKRLMQTILNIVGNAVKFT--K-EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~--~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
+..-+..++.+++.||++.. . ...+.+.+ ..+. .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i--~~~g---------------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI--EKDN---------------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE--EGGG---------------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE--eCCC---------------------eEEEEECCCCccccc
Confidence 55678999999999999963 2 33444433 2221 599999999999874
No 88
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.18 E-value=0.0021 Score=59.52 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred EEEEEecCCCCCCCChhh
Q 008720 512 RVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~ 529 (556)
.|+|.|||+||+++.+..
T Consensus 94 tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp EEEEEECSCCCCHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 689999999999988654
No 89
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.15 E-value=0.0015 Score=60.69 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 463 vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
++.+||+||.++.. .+.+.|.+....+. -.|+|.|||+||+++.+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 78899999999853 12233433333322 36899999999999997
Q ss_pred hhhhcc
Q 008720 528 PLLFTK 533 (556)
Q Consensus 528 ~~iF~~ 533 (556)
...|..
T Consensus 92 ~~~l~t 97 (269)
T 1qy5_A 92 VKNLGT 97 (269)
T ss_dssp HHHHHS
T ss_pred HHHhhh
Confidence 665543
No 90
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.13 E-value=0.0036 Score=64.37 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=18.5
Q ss_pred EEEEEecCCCCCCCChhhhhccC
Q 008720 512 RVQVNDSGCGVPPQDIPLLFTKF 534 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF~~f 534 (556)
.|+|.|||+||+++.+..-|...
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~ti 97 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTI 97 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhhh
Confidence 68999999999999876655443
No 91
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.09 E-value=0.0073 Score=59.86 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcC---C-CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCChhh
Q 008720 458 KRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (556)
Q Consensus 458 ~~l~~vl~nLl~NAik~~---~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~~~ 529 (556)
.-|..++.+++.||++.. + ...+.+.+. .++. .|+|.|||+|||.+..++
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~-~d~~---------------------sI~V~DnGrGIPv~~h~~ 116 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEEH---------------------TIEVKNDGKGIPIEIHNK 116 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTTT---------------------EEEEEEESSCCCCSBCTT
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEE-CCCC---------------------EEEEEECCCcccCccccc
Confidence 458889999999998765 2 233333322 2212 589999999999887543
No 92
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=96.02 E-value=0.0053 Score=55.31 Aligned_cols=56 Identities=30% Similarity=0.471 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC-------h
Q 008720 456 DEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-------I 527 (556)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~-------~ 527 (556)
+..-|..++.+++.||++..-.|. ..+.+....+. .|+|.|||.|||.+. .
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g---------------------~i~V~DnG~GIp~~~h~~~~~~~ 95 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG---------------------SLTVQDHGRGMPTGMHAMGIPTV 95 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEECSSCCCCSBCGGGCBHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC---------------------eEEEEEcCCCccccccccCceeh
Confidence 455688999999999998743221 22223222221 499999999999998 5
Q ss_pred hhhhc
Q 008720 528 PLLFT 532 (556)
Q Consensus 528 ~~iF~ 532 (556)
+-+|.
T Consensus 96 e~v~t 100 (226)
T 4emv_A 96 EVIFT 100 (226)
T ss_dssp HHHHH
T ss_pred heeEE
Confidence 55664
No 93
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=95.82 E-value=0.084 Score=49.56 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHhhhCCceeEEEccCCCC-CeeEEEEeeccccccccccccCChhHHHHhcccCceEccCCCchhhhhh
Q 008720 159 RHTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (556)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 237 (556)
++.+.+...+.+.+..+.+.++||..++++ .........++ ...+..+++.+..++.+++...+.+.....
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~---- 95 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLER---- 95 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC---------
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhc----
Confidence 344578889999999999999999987665 22222222222 125666889999999999998887532111
Q ss_pred cccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008720 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (556)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~~a~~~~ 314 (556)
..........+++|| +..++...|++.+..-....++++.++++..++.+++.++.++....
T Consensus 96 --~~~~~~sryL~viPL-------------ld~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~~ 157 (298)
T 4eu0_A 96 --GEQRAHSAAAVCVPL-------------VDTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRAL 157 (298)
T ss_dssp ----------CCEEEEE-------------ECTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred --cccccccceEEEEEe-------------ecCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 000123456678886 44677789999999998889999999999999999999998877553
No 94
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.0073 Score=63.28 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.8
Q ss_pred EEEEEecCCCCCCCChhhhh
Q 008720 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|+|.|||+||+.+.+..-+
T Consensus 74 ~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGG
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 58999999999998876544
No 95
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.20 E-value=0.0046 Score=56.59 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.8
Q ss_pred EEEEEecCCCCCCCChhhhh
Q 008720 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|+|.|||+||+++.+..-|
T Consensus 108 ~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHH
T ss_pred EEEEecCCCCcCHHHHHHHH
Confidence 68999999999998875544
No 96
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.91 E-value=0.012 Score=61.76 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+||+||.++.. .+...|.+....+. -.|+|.|||+||+.++
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 578899999999861 22233333333332 2589999999999988
Q ss_pred hhhhhc
Q 008720 527 IPLLFT 532 (556)
Q Consensus 527 ~~~iF~ 532 (556)
+..-|.
T Consensus 108 l~~~l~ 113 (666)
T 2o1u_A 108 LVKNLG 113 (666)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 765543
No 97
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=94.70 E-value=0.021 Score=56.16 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcCCCC-eEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 461 MQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 461 ~~vl~nLl~NAik~~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
..++.+++.||++..-.| ...|.+....++ .|+|.|||.|||.+..
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dg---------------------sI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDG---------------------SCEVSDDGRGMPVDIH 98 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---------------------CEEEEECSSCCCCSBC
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCC---------------------eEEEEEcCCCCCcccc
Confidence 677888888888764222 122222222222 4999999999999874
No 98
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.32 E-value=0.011 Score=53.62 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.5
Q ss_pred EEEEEEecCCCCCCCChh
Q 008720 511 LRVQVNDSGCGVPPQDIP 528 (556)
Q Consensus 511 v~i~V~DnG~Gi~~e~~~ 528 (556)
-.|+|.|||+||+++++.
T Consensus 86 ~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp TEEEEEECSCCCCHHHHH
T ss_pred cEEEEEeCCCCCCHHHHH
Confidence 368999999999998873
No 99
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=93.81 E-value=0.03 Score=58.40 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCeEEEEEEeecCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCC
Q 008720 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (556)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~ 526 (556)
.++.+||+||+++.. .+...|.+....+. -.|+|.|||+||+++.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 568899999999861 22223333333322 2689999999999998
Q ss_pred hhhhhc
Q 008720 527 IPLLFT 532 (556)
Q Consensus 527 ~~~iF~ 532 (556)
+..-|.
T Consensus 90 l~~~l~ 95 (624)
T 2ioq_A 90 VIDHLG 95 (624)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 100
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=92.77 E-value=0.021 Score=51.71 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.1
Q ss_pred EEEEEecCCCCCCCChhhhh
Q 008720 512 RVQVNDSGCGVPPQDIPLLF 531 (556)
Q Consensus 512 ~i~V~DnG~Gi~~e~~~~iF 531 (556)
.|+|.|||+||+++.+.+-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58999999999999887644
No 101
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=91.90 E-value=3.1 Score=37.97 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=83.3
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCCCeeEEEEeeccccccccccccCChhHHH
Q 008720 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTD 216 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (556)
+..++....+.++...+....+.+++++.+.+.+.+.++++.+.+++.+...... .+.. ........+..
T Consensus 96 ~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~--~~~~--------~~~~~~~~~~~ 165 (252)
T 3e98_A 96 RENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV--GRSV--------SSAEAHQAIGG 165 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS--SEEE--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc--hhhc--------cchhHHHHHHH
Confidence 3333444556778888888999999999999999999999999999987543210 0000 00000112233
Q ss_pred HhcccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccc-cchHHH
Q 008720 217 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWR-DHELEL 295 (556)
Q Consensus 217 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~-~~e~~l 295 (556)
.+..+.+..-.........=+ .........+...+| |..++ .+|++.+.+..+..|+ .....+
T Consensus 166 ~l~~~~py~G~l~~~e~~~lF-g~~~a~~v~S~Allp--------------L~~~~-~~GlLalGS~D~~rF~p~mgT~f 229 (252)
T 3e98_A 166 LLSGGKTVCGVLRPHELAFLF-GESDRDEIGSAAVVS--------------LSFQG-LHGVLAIGSPDPQHYKSSLGTLF 229 (252)
T ss_dssp HHTTCCCSTTCCCHHHHHHHC-CCTTGGGCCEEEEEE--------------EESSS-EEEEEEEEESSTTGGGSTTTTHH
T ss_pred HhCCCCceECCCCchHHHHhc-CCCccccccceEEEE--------------cCCCC-ceEEEEEcCCChhhcCCCCcHHH
Confidence 343333322111111111000 100112234555556 43333 6888888887766665 567788
Q ss_pred HHHHHHHHHHHHH
Q 008720 296 IDVVADQVAVALS 308 (556)
Q Consensus 296 l~~~a~~~~~al~ 308 (556)
+..+|..++.++.
T Consensus 230 L~~La~vvs~~L~ 242 (252)
T 3e98_A 230 LGYVAEVLARVLP 242 (252)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887764
No 102
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=91.12 E-value=0.17 Score=56.82 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC--eEEEEEEee-cCCCCCCCCCCCCCCCCCCCceEEEEEEEecCCCCCCCCh
Q 008720 459 RLMQTILNIVGNAVKFTKEG--YVSIIASVA-KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (556)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DnG~Gi~~e~~ 527 (556)
-|..++.+.|.||++..-.| ...|.+... +++ .|+|.|||.|||-+..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~---------------------sisV~DnGRGIPvd~h 109 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH---------------------TIEVKNDGKGIPIEIH 109 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT---------------------EEEEEECSSCCCCSBC
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC---------------------EEEEEecCCccccccc
Confidence 58888999999998854222 122223222 222 5999999999997653
No 103
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=88.40 E-value=0.17 Score=55.36 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=61.6
Q ss_pred cccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccc-------cCCCCCCcccceEEEEEeccCCCCccccc
Q 008720 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (556)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 291 (556)
...+.+.+++.++.+++.+++..|..|....|+|.|.+.+.-|. ..|++|++|.|++-|...+.++ .|++.
T Consensus 695 ~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~~ 772 (795)
T 4a2l_A 695 SETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNPI 772 (795)
T ss_dssp GGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCSS
T ss_pred ccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCCC
Confidence 34567889999999999999999999999999999999887764 3689999999999999988776 67654
Q ss_pred h
Q 008720 292 E 292 (556)
Q Consensus 292 e 292 (556)
+
T Consensus 773 ~ 773 (795)
T 4a2l_A 773 P 773 (795)
T ss_dssp C
T ss_pred c
Confidence 3
No 104
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.30 E-value=0.18 Score=54.76 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=60.9
Q ss_pred ccCceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccc--------cCCCCCCcccceEEEEEeccCCCCccccc
Q 008720 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI--------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (556)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~--------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 291 (556)
..+.+.+++.++.+++.+++..|..|.+..++|.|.+.+.-|. ..|++|++|.|++-|...+.++ .|++.
T Consensus 661 ~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~ 738 (758)
T 3ott_A 661 YTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSNR 738 (758)
T ss_dssp GCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCSS
T ss_pred ccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccCc
Confidence 3467889999999999999999999999999999998887664 2589999999999999988776 67765
Q ss_pred h
Q 008720 292 E 292 (556)
Q Consensus 292 e 292 (556)
+
T Consensus 739 ~ 739 (758)
T 3ott_A 739 P 739 (758)
T ss_dssp C
T ss_pred c
Confidence 4
No 105
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=82.52 E-value=0.43 Score=52.01 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=59.3
Q ss_pred Cc-eEccCCCchhhhhhcccCCCCCcceeeeeccccccCccc-------cCCCCCCcccceEEEEEeccCCCCccccch
Q 008720 222 QA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (556)
Q Consensus 222 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e 292 (556)
+. +.+++.++.+++.+++..|..|....++|.|.+.+.-|. ..|++|++|.|++-|...+.++ .|++.+
T Consensus 691 ~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 691 EGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp SSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred CccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 44 889999999999999999999999999999998877664 3689999999999999998876 676543
No 106
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=72.50 E-value=4.5 Score=41.03 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=43.1
Q ss_pred hhhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccC
Q 008720 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 136 ~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
.+.+.+..+.+.++...++++.+..+.+.+....+.+++++|++++|..+
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 312 AELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 34455667778889999999999999999999999999999999998765
No 107
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=48.49 E-value=39 Score=34.29 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=39.9
Q ss_pred hhHHHHhHHHHHHHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccC
Q 008720 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (556)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (556)
+.+.+..+....+...++.+.+..+.+.+....+.+++++|.++++.-+
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 3444555566778888888889999999999999999999999998643
No 108
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=30.61 E-value=2.8e+02 Score=24.36 Aligned_cols=140 Identities=8% Similarity=-0.057 Sum_probs=73.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhhhCCceeEEEccCCCC---CeeEEEEeecccc---ccccccccCChhHHHHhcccC
Q 008720 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTG---LNLELSYTLNNQI---QIGSSVPINLPIVTDVFNSAQ 222 (556)
Q Consensus 149 ~~~~l~~~~~~~~il~~~~~~l~~~l~~~~~~i~l~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~ 222 (556)
+...+.+..+.+++.+. +..+.+.+|.+.++++...+.. ....+...+...+ ....+.-..+|.+.....+..
T Consensus 8 ~~~~l~~a~~~~~l~~~-l~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~~ 86 (237)
T 3szt_A 8 YLEILSRITTEEEFFSL-VLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYT 86 (237)
T ss_dssp HHHHHHHCCSHHHHHHH-HHHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSCS
T ss_pred HHHHHHcCCCHHHHHHH-HHHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCCC
Confidence 44556667777775554 4888899999999987644321 1222222332221 122234556788888888888
Q ss_pred ceEccCCCchhhhhhcccCCCCCcceeeeeccccccCccccCCCCCCcccceEEEEEeccCCCCccccchHHHHHHHHHH
Q 008720 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (556)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (556)
+..-.+......-.+.......+....+.+|+...+ ...|++.+.... ..+++.+...+......
T Consensus 87 p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~--------------g~~g~ls~~~~~-~~~~~~~~~~~~~~~~~ 151 (237)
T 3szt_A 87 PLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKY--------------GLISMLSLVRSS-ESIAATEILEKESFLLW 151 (237)
T ss_dssp CEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEECGG--------------GCEEEEEEEESS-SCCCHHHHHHHHHHHHH
T ss_pred CEEeCCCCcccHHHHHHHHHHcCCCCEEEEEeeCCC--------------CCeEEEEEecCC-CcCCHHHHHHHHHHHHH
Confidence 776664432111111111112334466677753322 224555554443 25666666555444444
Q ss_pred HH
Q 008720 303 VA 304 (556)
Q Consensus 303 ~~ 304 (556)
++
T Consensus 152 l~ 153 (237)
T 3szt_A 152 IT 153 (237)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 109
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=27.74 E-value=2.7e+02 Score=23.28 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCcccceEEEEEeccCCCCccccchHHHHHHHHHHHHHHHH
Q 008720 268 LPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS 308 (556)
Q Consensus 268 l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~~~al~ 308 (556)
+..++.-.|.+++.... ..|+++|+-+++..|..++.-+.
T Consensus 126 I~g~GeRLGTLvl~r~~-~~F~ddDLILaEyaATVVGlEIL 165 (170)
T 2gx5_A 126 IIGGGERLGTLILSRLQ-DQFNDDDLILAEYGATVVGMEIL 165 (170)
T ss_dssp EEETTEEEEEEEEEESS-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCeEEEEEEEEecC-CCCChhHHHHHHHHHHHHHHHHH
Confidence 55566668888776543 37999999999999999987763
No 110
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.69 E-value=1.1e+02 Score=19.08 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=5.0
Q ss_pred ccCCCCCCCh
Q 008720 5 DCIDTQWPPD 14 (556)
Q Consensus 5 ~~~~~~~~~~ 14 (556)
+|.+..++..
T Consensus 2 gCp~~~s~~~ 11 (44)
T 2ks1_B 2 GCPTNGPKIP 11 (44)
T ss_dssp CCCCCCSCSS
T ss_pred CCCCCCCCcc
Confidence 4555545544
No 111
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=21.46 E-value=67 Score=16.58 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhHH
Q 008720 57 QFGSFIILCGLTHF 70 (556)
Q Consensus 57 ~~~~fi~~~g~~hl 70 (556)
+.+.||+-|.+-|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 45668888887763
Done!