Query 008721
Match_columns 556
No_of_seqs 331 out of 1392
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 15:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 4.9E-31 1.1E-35 295.3 22.5 396 100-534 216-625 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 4.2E-27 9.2E-32 212.7 12.7 107 105-213 4-111 (119)
3 cd05497 Bromo_Brdt_I_like Brom 99.9 7.2E-27 1.6E-31 207.4 12.2 102 107-208 6-107 (107)
4 cd05495 Bromo_cbp_like Bromodo 99.9 1.2E-26 2.5E-31 206.3 12.9 105 105-209 2-107 (108)
5 cd05505 Bromo_WSTF_like Bromod 99.9 2.6E-26 5.7E-31 200.6 10.7 95 108-204 2-96 (97)
6 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.3E-25 2.8E-30 197.6 12.0 102 103-204 1-102 (103)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 8.5E-26 1.8E-30 196.9 10.6 96 108-205 2-97 (97)
8 cd05507 Bromo_brd8_like Bromod 99.9 1.8E-25 3.8E-30 197.4 11.8 101 105-207 2-102 (104)
9 cd05506 Bromo_plant1 Bromodoma 99.9 1.3E-25 2.9E-30 195.5 10.6 98 108-205 2-99 (99)
10 cd05502 Bromo_tif1_like Bromod 99.9 3E-25 6.6E-30 197.1 12.7 104 103-209 1-107 (109)
11 cd05504 Bromo_Acf1_like Bromod 99.9 2.3E-25 5.1E-30 200.1 12.0 103 105-209 11-113 (115)
12 cd05498 Bromo_Brdt_II_like Bro 99.9 2.7E-25 5.8E-30 194.8 10.6 98 108-205 2-102 (102)
13 cd05510 Bromo_SPT7_like Bromod 99.9 4.7E-25 1E-29 197.5 11.4 103 105-209 6-110 (112)
14 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.2E-25 1.1E-29 193.2 10.8 98 108-205 2-102 (102)
15 cd05508 Bromo_RACK7 Bromodomai 99.9 6.7E-25 1.5E-29 192.5 11.2 96 106-204 3-98 (99)
16 cd05509 Bromo_gcn5_like Bromod 99.9 8E-25 1.7E-29 191.4 11.4 100 107-208 2-101 (101)
17 cd05501 Bromo_SP100C_like Brom 99.9 1.5E-24 3.2E-29 191.2 12.2 97 107-208 3-99 (102)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.7E-24 5.8E-29 190.9 10.4 100 107-208 2-107 (107)
19 cd05511 Bromo_TFIID Bromodomai 99.9 5.5E-24 1.2E-28 190.4 11.4 103 109-213 3-105 (112)
20 cd05528 Bromo_AAA Bromodomain; 99.9 6.1E-24 1.3E-28 190.3 11.3 104 105-210 2-109 (112)
21 cd05513 Bromo_brd7_like Bromod 99.9 7.3E-24 1.6E-28 185.6 10.5 92 108-201 3-94 (98)
22 cd05512 Bromo_brd1_like Bromod 99.9 1.4E-23 3E-28 183.8 10.6 91 108-200 3-93 (98)
23 cd05515 Bromo_polybromo_V Brom 99.9 7.7E-23 1.7E-27 180.9 10.5 97 108-206 2-104 (105)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 8.9E-23 1.9E-27 179.6 10.0 96 108-205 2-103 (103)
25 cd05529 Bromo_WDR9_I_like Brom 99.9 2.9E-22 6.2E-27 183.3 12.9 106 101-207 19-127 (128)
26 cd05524 Bromo_polybromo_I Brom 99.9 1.7E-22 3.6E-27 181.2 10.7 101 108-210 4-110 (113)
27 smart00297 BROMO bromo domain. 99.9 3.8E-22 8.2E-27 174.2 11.7 101 105-207 6-106 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 2.2E-22 4.8E-27 177.6 9.9 92 111-204 5-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 3.1E-22 6.8E-27 176.7 9.9 94 108-203 2-101 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 3.3E-22 7.2E-27 176.6 9.8 94 109-204 3-102 (103)
31 cd05525 Bromo_ASH1 Bromodomain 99.9 5.1E-22 1.1E-26 176.3 11.0 96 107-204 3-104 (106)
32 PF00439 Bromodomain: Bromodom 99.8 4.7E-21 1E-25 160.4 9.1 84 111-196 1-84 (84)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 7.4E-21 1.6E-25 168.1 10.1 93 109-203 4-102 (104)
34 cd04369 Bromodomain Bromodomai 99.8 7E-21 1.5E-25 160.8 9.5 95 109-205 3-99 (99)
35 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.5E-20 3.3E-25 167.7 11.7 99 111-209 5-107 (109)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.3E-20 5.1E-25 165.7 10.6 95 108-206 3-103 (106)
37 COG5076 Transcription factor i 99.7 7.2E-18 1.6E-22 178.5 12.4 149 122-274 164-312 (371)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.5E-17 3.2E-22 148.7 10.8 100 106-209 3-108 (110)
39 KOG1245 Chromatin remodeling c 99.7 1.6E-17 3.5E-22 198.2 7.7 95 111-208 1306-1400(1404)
40 KOG0008 Transcription initiati 99.5 1.4E-14 3E-19 167.9 8.6 168 108-279 1263-1436(1563)
41 KOG1472 Histone acetyltransfer 99.5 5.2E-14 1.1E-18 157.8 6.0 103 106-210 606-708 (720)
42 cd05494 Bromodomain_1 Bromodom 99.3 1.3E-12 2.9E-17 117.6 4.0 80 106-185 3-89 (114)
43 KOG0008 Transcription initiati 99.3 6.7E-13 1.4E-17 154.1 1.7 156 54-211 1327-1485(1563)
44 cd05491 Bromo_TBP7_like Bromod 99.0 5.5E-10 1.2E-14 101.1 4.6 42 146-187 62-103 (119)
45 KOG0955 PHD finger protein BR1 99.0 9.3E-10 2E-14 128.6 7.3 102 108-211 567-668 (1051)
46 KOG0386 Chromatin remodeling c 98.8 4.1E-09 9E-14 121.0 7.3 100 109-210 1027-1132(1157)
47 KOG1827 Chromatin remodeling c 98.8 9.9E-09 2.1E-13 114.4 8.3 103 102-206 48-156 (629)
48 KOG1474 Transcription initiati 98.6 1.1E-08 2.4E-13 116.0 0.3 93 116-208 2-94 (640)
49 KOG1472 Histone acetyltransfer 98.5 5.4E-08 1.2E-12 110.1 4.5 78 103-189 290-367 (720)
50 KOG1828 IRF-2-binding protein 98.0 9.9E-07 2.1E-11 93.3 -0.9 95 110-206 23-117 (418)
51 KOG1828 IRF-2-binding protein 97.9 7.8E-06 1.7E-10 86.6 4.0 83 114-199 216-298 (418)
52 COG5076 Transcription factor i 97.4 1.6E-05 3.6E-10 84.8 -2.0 154 50-208 210-363 (371)
53 PTZ00266 NIMA-related protein 97.1 0.0063 1.4E-07 72.8 14.6 17 185-201 221-237 (1021)
54 KOG1029 Endocytic adaptor prot 97.0 0.0019 4.1E-08 73.7 8.3 57 461-517 341-410 (1118)
55 PTZ00266 NIMA-related protein 96.5 0.0086 1.9E-07 71.7 9.2 30 463-492 469-498 (1021)
56 KOG1029 Endocytic adaptor prot 96.2 0.014 3.1E-07 66.9 8.4 19 493-511 401-419 (1118)
57 cd05493 Bromo_ALL-1 Bromodomai 96.1 0.0099 2.1E-07 55.3 5.5 66 148-213 59-124 (131)
58 PLN03086 PRLI-interacting fact 96.0 0.013 2.8E-07 66.1 6.9 89 463-552 10-109 (567)
59 KOG0163 Myosin class VI heavy 95.9 0.016 3.4E-07 66.5 6.8 59 453-511 931-1001(1259)
60 KOG2072 Translation initiation 92.5 0.54 1.2E-05 55.0 9.3 86 443-538 568-665 (988)
61 KOG1144 Translation initiation 91.3 0.65 1.4E-05 54.1 8.1 29 461-489 234-262 (1064)
62 KOG0644 Uncharacterized conser 90.5 0.21 4.5E-06 58.3 3.4 61 145-205 1050-1110(1113)
63 KOG3054 Uncharacterized conser 89.7 1.4 2.9E-05 45.3 8.0 26 497-522 161-186 (299)
64 PTZ00121 MAEBL; Provisional 89.4 1.6 3.6E-05 53.9 9.5 16 430-445 1120-1135(2084)
65 KOG1144 Translation initiation 88.3 1.8 3.8E-05 50.7 8.5 23 461-483 226-248 (1064)
66 KOG0732 AAA+-type ATPase conta 85.9 0.37 7.9E-06 58.1 1.6 66 122-187 531-601 (1080)
67 PF09726 Macoilin: Transmembra 85.5 34 0.00074 40.3 17.1 44 425-469 428-474 (697)
68 PTZ00121 MAEBL; Provisional 84.4 3.1 6.8E-05 51.6 8.2 9 137-145 670-678 (2084)
69 PF06936 Selenoprotein_S: Sele 83.8 5 0.00011 39.8 8.2 19 450-468 68-86 (190)
70 PF13904 DUF4207: Domain of un 83.6 36 0.00078 35.2 14.7 18 476-493 113-130 (264)
71 KOG4364 Chromatin assembly fac 83.5 4 8.7E-05 47.1 8.2 45 498-543 307-353 (811)
72 KOG0163 Myosin class VI heavy 83.0 6.2 0.00013 46.3 9.4 18 193-210 477-494 (1259)
73 PF05672 MAP7: MAP7 (E-MAP-115 82.9 6.8 0.00015 38.3 8.5 55 465-519 95-156 (171)
74 KOG2002 TPR-containing nuclear 82.3 4.6 0.0001 48.4 8.4 24 472-498 843-866 (1018)
75 PF09802 Sec66: Preprotein tra 82.3 20 0.00044 35.7 11.6 42 417-458 64-112 (190)
76 KOG3054 Uncharacterized conser 81.5 6.1 0.00013 40.7 7.9 34 464-498 137-170 (299)
77 PF03154 Atrophin-1: Atrophin- 80.1 0.91 2E-05 54.0 1.8 38 473-511 588-625 (982)
78 KOG2891 Surface glycoprotein [ 80.1 7.8 0.00017 40.7 8.2 18 462-479 331-348 (445)
79 KOG2412 Nuclear-export-signal 79.3 7.1 0.00015 44.2 8.2 38 456-493 198-241 (591)
80 KOG4661 Hsp27-ERE-TATA-binding 76.9 9.4 0.0002 43.5 8.2 12 526-537 691-702 (940)
81 COG5269 ZUO1 Ribosome-associat 76.7 6.1 0.00013 41.4 6.3 43 443-485 216-263 (379)
82 KOG2072 Translation initiation 76.2 13 0.00029 44.0 9.4 8 162-169 251-258 (988)
83 cd05495 Bromo_cbp_like Bromodo 76.1 2.3 5E-05 38.1 2.8 38 240-277 20-58 (108)
84 cd05497 Bromo_Brdt_I_like Brom 75.9 2.5 5.4E-05 37.8 2.9 39 239-277 20-59 (107)
85 PF06785 UPF0242: Uncharacteri 75.7 15 0.00032 39.6 8.8 64 463-527 131-194 (401)
86 PLN02316 synthase/transferase 75.4 6.5 0.00014 48.0 7.1 63 458-522 259-321 (1036)
87 PLN03086 PRLI-interacting fact 75.3 5.3 0.00011 45.7 6.0 49 442-493 7-55 (567)
88 TIGR03825 FliH_bacil flagellar 74.7 11 0.00023 38.6 7.5 81 431-511 4-92 (255)
89 cd05508 Bromo_RACK7 Bromodomai 73.5 2.6 5.7E-05 37.3 2.4 37 240-277 18-54 (99)
90 PF07946 DUF1682: Protein of u 72.7 18 0.00039 38.3 8.9 8 435-442 242-249 (321)
91 PF05262 Borrelia_P83: Borreli 72.4 14 0.00031 41.6 8.3 9 433-441 204-212 (489)
92 cd05496 Bromo_WDR9_II Bromodom 71.2 6.9 0.00015 35.9 4.7 37 240-277 21-57 (119)
93 PRK06569 F0F1 ATP synthase sub 71.2 15 0.00033 35.4 7.1 85 438-525 36-124 (155)
94 PF07946 DUF1682: Protein of u 70.9 16 0.00034 38.8 7.9 26 420-445 251-276 (321)
95 PRK00409 recombination and DNA 66.8 24 0.00053 42.0 9.1 20 150-169 70-89 (782)
96 cd05492 Bromo_ZMYND11 Bromodom 66.6 4.8 0.0001 36.5 2.6 39 239-277 16-58 (109)
97 cd05507 Bromo_brd8_like Bromod 66.4 4.5 9.8E-05 35.9 2.4 38 239-277 18-55 (104)
98 PF05672 MAP7: MAP7 (E-MAP-115 65.8 35 0.00077 33.5 8.5 53 418-483 16-68 (171)
99 cd05505 Bromo_WSTF_like Bromod 65.4 5.2 0.00011 35.2 2.6 36 240-276 16-51 (97)
100 PF06936 Selenoprotein_S: Sele 63.3 28 0.00061 34.6 7.4 14 499-512 106-119 (190)
101 PF15437 PGBA_C: Plasminogen-b 62.7 33 0.00072 29.8 6.7 45 467-514 39-83 (86)
102 COG3756 Uncharacterized protei 62.7 12 0.00026 35.7 4.5 97 417-527 36-137 (153)
103 PF06637 PV-1: PV-1 protein (P 62.3 41 0.00088 36.9 8.9 20 503-522 363-382 (442)
104 KOG3654 Uncharacterized CH dom 62.2 28 0.0006 39.4 7.8 11 525-535 455-465 (708)
105 cd05494 Bromodomain_1 Bromodom 61.9 7.1 0.00015 35.4 2.8 38 239-276 18-56 (114)
106 KOG3654 Uncharacterized CH dom 60.9 22 0.00048 40.1 6.8 29 488-516 432-460 (708)
107 PRK09510 tolA cell envelope in 60.4 46 0.001 36.6 9.1 7 417-423 51-57 (387)
108 KOG4661 Hsp27-ERE-TATA-binding 60.3 28 0.00061 39.9 7.6 17 167-183 110-126 (940)
109 KOG2133 Transcriptional corepr 59.4 6.3 0.00014 47.2 2.5 45 469-513 816-861 (1229)
110 KOG1827 Chromatin remodeling c 57.6 1.5 3.3E-05 50.3 -2.7 75 124-200 213-287 (629)
111 KOG0742 AAA+-type ATPase [Post 57.3 1E+02 0.0022 34.7 11.0 8 423-430 115-122 (630)
112 CHL00118 atpG ATP synthase CF0 56.7 1.1E+02 0.0025 28.8 10.2 9 440-448 50-58 (156)
113 PRK06568 F0F1 ATP synthase sub 55.8 84 0.0018 30.2 9.1 27 440-468 32-58 (154)
114 cd03405 Band_7_HflC Band_7_Hfl 54.4 67 0.0015 31.9 8.6 19 520-538 223-241 (242)
115 cd05528 Bromo_AAA Bromodomain; 54.0 12 0.00025 33.9 2.8 36 240-276 19-54 (112)
116 cd05510 Bromo_SPT7_like Bromod 54.0 10 0.00022 34.4 2.4 35 241-276 25-59 (112)
117 PF15236 CCDC66: Coiled-coil d 53.6 73 0.0016 30.9 8.2 16 458-473 69-84 (157)
118 PLN02316 synthase/transferase 53.5 38 0.00083 41.7 7.8 10 504-513 295-304 (1036)
119 PRK08476 F0F1 ATP synthase sub 53.3 81 0.0018 29.5 8.4 9 440-448 35-43 (141)
120 cd05513 Bromo_brd7_like Bromod 53.2 13 0.00029 32.8 3.0 35 241-276 18-52 (98)
121 KOG2357 Uncharacterized conser 52.5 49 0.0011 36.6 7.6 13 454-466 365-377 (440)
122 PRK14474 F0F1 ATP synthase sub 52.5 70 0.0015 32.9 8.5 9 440-448 33-41 (250)
123 PRK06568 F0F1 ATP synthase sub 52.2 2E+02 0.0043 27.7 11.0 17 497-513 105-121 (154)
124 KOG3634 Troponin [Cytoskeleton 51.8 30 0.00064 37.2 5.7 13 456-468 90-102 (361)
125 PRK07352 F0F1 ATP synthase sub 51.4 1.6E+02 0.0035 28.2 10.4 13 438-450 45-57 (174)
126 PRK09174 F0F1 ATP synthase sub 51.0 1.1E+02 0.0024 30.6 9.4 44 438-483 79-124 (204)
127 PRK06231 F0F1 ATP synthase sub 50.8 1.6E+02 0.0034 29.4 10.4 11 438-448 74-84 (205)
128 KOG2002 TPR-containing nuclear 50.6 72 0.0016 38.8 9.1 15 450-464 797-812 (1018)
129 cd05502 Bromo_tif1_like Bromod 50.3 13 0.00028 33.1 2.5 36 240-277 20-55 (109)
130 KOG1363 Predicted regulator of 49.0 44 0.00094 37.6 6.8 16 495-510 349-364 (460)
131 cd05503 Bromo_BAZ2A_B_like Bro 49.0 14 0.0003 32.3 2.4 36 240-276 16-51 (97)
132 TIGR03321 alt_F1F0_F0_B altern 48.7 1.8E+02 0.0039 29.6 10.7 15 516-531 138-152 (246)
133 PF05278 PEARLI-4: Arabidopsis 48.3 1.2E+02 0.0027 31.8 9.5 19 427-446 166-184 (269)
134 CHL00019 atpF ATP synthase CF0 48.3 1.4E+02 0.003 28.9 9.5 14 435-448 47-60 (184)
135 PRK13454 F0F1 ATP synthase sub 48.1 99 0.0021 30.1 8.4 11 438-448 57-67 (181)
136 PF12037 DUF3523: Domain of un 48.0 1.2E+02 0.0026 32.0 9.4 21 465-485 132-152 (276)
137 cd05500 Bromo_BDF1_2_I Bromodo 47.2 17 0.00038 32.0 2.8 39 239-277 19-58 (103)
138 KOG2391 Vacuolar sorting prote 47.0 69 0.0015 34.7 7.6 15 511-525 279-293 (365)
139 PRK08476 F0F1 ATP synthase sub 46.9 1.6E+02 0.0035 27.5 9.4 13 498-510 98-110 (141)
140 PF09756 DDRGK: DDRGK domain; 46.2 6.7 0.00014 38.9 0.0 29 494-522 57-85 (188)
141 cd05511 Bromo_TFIID Bromodomai 45.6 16 0.00034 32.9 2.3 36 240-276 16-51 (112)
142 PRK13453 F0F1 ATP synthase sub 44.5 2.2E+02 0.0048 27.4 10.2 9 440-448 46-54 (173)
143 PRK13428 F0F1 ATP synthase sub 44.2 87 0.0019 34.9 8.2 11 527-537 149-159 (445)
144 KOG0644 Uncharacterized conser 43.5 11 0.00024 44.8 1.2 69 129-200 88-186 (1113)
145 cd05512 Bromo_brd1_like Bromod 43.3 20 0.00043 31.6 2.5 35 241-276 18-52 (98)
146 PRK09173 F0F1 ATP synthase sub 43.1 1.5E+02 0.0033 27.8 8.7 9 440-448 30-38 (159)
147 cd05506 Bromo_plant1 Bromodoma 42.7 25 0.00054 30.5 3.0 36 241-276 17-53 (99)
148 TIGR01069 mutS2 MutS2 family p 42.5 1.3E+02 0.0028 36.0 9.7 19 150-168 67-85 (771)
149 PRK01005 V-type ATP synthase s 42.0 1.3E+02 0.0029 30.2 8.4 10 509-518 78-87 (207)
150 PRK14471 F0F1 ATP synthase sub 41.7 2.7E+02 0.0059 26.3 10.2 8 441-448 37-44 (164)
151 PTZ00399 cysteinyl-tRNA-synthe 41.6 53 0.0011 38.4 6.3 15 455-469 548-562 (651)
152 PF09726 Macoilin: Transmembra 41.5 76 0.0017 37.5 7.6 8 499-506 546-553 (697)
153 TIGR02794 tolA_full TolA prote 41.4 1.3E+02 0.0028 32.6 8.8 6 550-555 272-277 (346)
154 PF12037 DUF3523: Domain of un 41.4 1.1E+02 0.0025 32.2 8.0 12 427-438 111-122 (276)
155 PRK00247 putative inner membra 41.0 91 0.002 34.8 7.7 6 459-464 324-329 (429)
156 PF07888 CALCOCO1: Calcium bin 40.9 1.6E+02 0.0035 33.9 9.7 103 429-535 334-450 (546)
157 PF00769 ERM: Ezrin/radixin/mo 40.7 1.4E+02 0.003 30.7 8.5 26 466-491 40-65 (246)
158 cd05529 Bromo_WDR9_I_like Brom 40.7 27 0.00059 32.2 3.1 40 238-277 41-80 (128)
159 PF03879 Cgr1: Cgr1 family; I 40.7 2.9E+02 0.0063 25.3 10.4 16 433-448 38-53 (108)
160 PF06637 PV-1: PV-1 protein (P 40.0 1E+02 0.0023 33.9 7.7 11 437-447 292-302 (442)
161 PRK11546 zraP zinc resistance 39.7 2E+02 0.0044 27.5 8.8 55 417-471 40-102 (143)
162 PF05262 Borrelia_P83: Borreli 39.4 72 0.0016 36.2 6.7 15 508-522 320-334 (489)
163 PF14372 DUF4413: Domain of un 39.0 1E+02 0.0022 27.1 6.4 52 160-211 3-54 (101)
164 PRK14473 F0F1 ATP synthase sub 38.9 3.2E+02 0.0069 25.8 10.2 9 440-448 36-44 (164)
165 PRK13460 F0F1 ATP synthase sub 38.3 3.2E+02 0.0069 26.2 10.2 9 440-448 44-52 (173)
166 cd05509 Bromo_gcn5_like Bromod 38.1 24 0.00051 30.8 2.2 35 241-276 18-52 (101)
167 PF05914 RIB43A: RIB43A; Inte 37.8 2.6E+02 0.0057 30.7 10.5 110 418-533 3-124 (379)
168 cd05504 Bromo_Acf1_like Bromod 37.8 25 0.00054 31.9 2.3 34 242-276 30-63 (115)
169 PRK14475 F0F1 ATP synthase sub 37.7 2.7E+02 0.0059 26.5 9.6 26 438-465 36-61 (167)
170 PRK13455 F0F1 ATP synthase sub 37.6 3.3E+02 0.007 26.4 10.2 25 439-465 54-78 (184)
171 PF15236 CCDC66: Coiled-coil d 36.9 1.9E+02 0.0042 28.1 8.3 21 458-478 79-99 (157)
172 PRK13461 F0F1 ATP synthase sub 36.7 3.6E+02 0.0079 25.3 10.2 9 440-448 33-41 (159)
173 PRK08475 F0F1 ATP synthase sub 36.2 4E+02 0.0086 25.6 10.4 8 441-448 51-58 (167)
174 PRK14472 F0F1 ATP synthase sub 35.3 3.8E+02 0.0082 25.7 10.2 10 439-448 45-54 (175)
175 TIGR02606 antidote_CC2985 puta 34.7 56 0.0012 27.1 3.7 27 152-178 12-38 (69)
176 PRK13454 F0F1 ATP synthase sub 33.8 3.1E+02 0.0067 26.7 9.4 16 499-514 134-149 (181)
177 PRK07353 F0F1 ATP synthase sub 33.7 3.7E+02 0.008 24.5 10.2 8 441-448 34-41 (140)
178 COG1390 NtpE Archaeal/vacuolar 33.3 3.2E+02 0.0069 27.2 9.5 17 532-548 91-107 (194)
179 cd05498 Bromo_Brdt_II_like Bro 33.1 43 0.00094 29.2 3.0 38 240-277 19-57 (102)
180 PF02841 GBP_C: Guanylate-bind 32.7 1.1E+02 0.0025 31.8 6.6 34 457-490 213-246 (297)
181 cd05499 Bromo_BDF1_2_II Bromod 32.4 38 0.00082 29.7 2.5 38 240-277 19-57 (102)
182 PRK05759 F0F1 ATP synthase sub 32.3 2.5E+02 0.0055 26.0 8.3 10 439-448 31-40 (156)
183 PRK14472 F0F1 ATP synthase sub 32.0 2.9E+02 0.0063 26.5 8.8 13 505-517 136-148 (175)
184 PF12848 ABC_tran_2: ABC trans 32.0 2.9E+02 0.0064 22.8 9.7 28 461-488 19-46 (85)
185 PF09731 Mitofilin: Mitochondr 32.0 1.8E+02 0.0039 33.1 8.5 7 509-515 343-349 (582)
186 KOG3375 Phosphoprotein/predict 31.9 2E+02 0.0044 27.8 7.3 52 460-511 108-167 (174)
187 TIGR01216 ATP_synt_epsi ATP sy 31.8 1.1E+02 0.0023 28.2 5.6 22 452-473 84-105 (130)
188 PF15402 Spc7_N: N-terminus of 31.7 55 0.0012 39.7 4.5 35 460-500 137-172 (927)
189 CHL00118 atpG ATP synthase CF0 31.2 4.5E+02 0.0098 24.7 10.2 12 499-510 114-125 (156)
190 PRK07352 F0F1 ATP synthase sub 30.9 2.4E+02 0.0053 27.0 8.1 10 436-445 55-64 (174)
191 PF13863 DUF4200: Domain of un 30.7 3.6E+02 0.0078 24.1 8.7 19 497-515 75-93 (126)
192 PRK11029 FtsH protease regulat 30.6 2.5E+02 0.0055 30.2 8.8 16 419-434 211-226 (334)
193 PF04696 Pinin_SDK_memA: pinin 30.3 1.6E+02 0.0035 27.4 6.5 26 524-551 91-116 (131)
194 KOG4722 Zn-finger protein [Gen 30.2 1.4E+02 0.0031 33.3 6.9 15 18-32 19-35 (672)
195 TIGR01144 ATP_synt_b ATP synth 30.0 4.4E+02 0.0095 24.2 10.2 9 440-448 23-31 (147)
196 PF11875 DUF3395: Domain of un 29.7 2.4E+02 0.0052 26.9 7.6 21 461-481 5-25 (151)
197 PF08524 rRNA_processing: rRNA 29.6 2.9E+02 0.0063 26.4 8.1 13 500-512 108-120 (148)
198 TIGR01541 tape_meas_lam_C phag 29.3 2.2E+02 0.0048 30.6 8.2 22 427-451 8-29 (332)
199 KOG2441 mRNA splicing factor/p 29.3 67 0.0014 35.5 4.2 25 457-481 301-325 (506)
200 PRK06231 F0F1 ATP synthase sub 29.1 3.9E+02 0.0084 26.6 9.4 8 438-445 86-93 (205)
201 PF10252 PP28: Casein kinase s 29.1 3.7E+02 0.008 23.5 7.9 34 455-488 21-55 (82)
202 cd05501 Bromo_SP100C_like Brom 29.0 50 0.0011 29.6 2.7 23 254-276 29-51 (102)
203 PF14943 MRP-S26: Mitochondria 28.8 4.1E+02 0.009 26.0 9.2 27 419-445 19-56 (170)
204 PRK12585 putative monovalent c 28.1 1.3E+02 0.0028 30.3 5.6 13 458-470 129-141 (197)
205 PRK13460 F0F1 ATP synthase sub 27.7 4.6E+02 0.01 25.1 9.4 13 505-517 134-146 (173)
206 PF12052 VGCC_beta4Aa_N: Volta 27.5 50 0.0011 25.2 2.0 15 503-517 24-38 (42)
207 COG5269 ZUO1 Ribosome-associat 27.0 3.1E+02 0.0068 29.2 8.3 71 441-512 235-308 (379)
208 PF11516 DUF3220: Protein of u 26.9 29 0.00063 30.1 0.8 12 427-438 91-102 (106)
209 PF13025 DUF3886: Protein of u 26.7 1.9E+02 0.0042 24.5 5.6 6 509-514 48-53 (70)
210 KOG2505 Ankyrin repeat protein 26.5 2.9E+02 0.0063 31.7 8.5 15 418-432 466-480 (591)
211 PRK00106 hypothetical protein; 26.5 3.6E+02 0.0078 31.1 9.6 10 531-540 158-167 (535)
212 cd05525 Bromo_ASH1 Bromodomain 25.9 1.3E+02 0.0027 27.0 4.8 34 242-276 26-59 (106)
213 KOG2441 mRNA splicing factor/p 25.5 1.7E+02 0.0037 32.5 6.4 36 442-479 293-330 (506)
214 KOG1245 Chromatin remodeling c 25.3 43 0.00094 42.5 2.2 44 241-285 1318-1361(1404)
215 PRK06800 fliH flagellar assemb 25.2 3.4E+02 0.0074 27.3 7.8 37 443-488 45-81 (228)
216 PRK14475 F0F1 ATP synthase sub 25.0 5.6E+02 0.012 24.4 9.4 19 501-519 124-142 (167)
217 KOG4691 Uncharacterized conser 24.6 2.7E+02 0.0058 28.2 7.0 61 443-503 107-170 (227)
218 TIGR00570 cdk7 CDK-activating 24.6 3.8E+02 0.0083 28.8 8.7 16 418-433 65-80 (309)
219 KOG2357 Uncharacterized conser 24.5 2.1E+02 0.0045 31.9 6.9 11 432-442 371-381 (440)
220 TIGR03321 alt_F1F0_F0_B altern 24.3 5.3E+02 0.011 26.2 9.5 9 440-448 33-41 (246)
221 cd05520 Bromo_polybromo_III Br 23.9 62 0.0013 28.7 2.4 37 240-277 22-58 (103)
222 TIGR01069 mutS2 MutS2 family p 23.9 5.7E+02 0.012 30.7 10.9 9 438-446 497-505 (771)
223 PRK12705 hypothetical protein; 23.9 9.6E+02 0.021 27.5 12.2 12 529-540 129-140 (508)
224 cd05516 Bromo_SNF2L2 Bromodoma 23.9 44 0.00095 29.8 1.5 34 242-276 25-58 (107)
225 smart00297 BROMO bromo domain. 23.8 1.3E+02 0.0029 25.8 4.5 34 242-276 25-58 (107)
226 cd05515 Bromo_polybromo_V Brom 22.9 55 0.0012 29.0 1.9 36 240-276 22-57 (105)
227 PRK10930 FtsH protease regulat 22.8 3.1E+02 0.0066 30.6 8.0 10 507-516 323-332 (419)
228 PRK14474 F0F1 ATP synthase sub 22.3 7.4E+02 0.016 25.4 10.2 20 525-544 146-166 (250)
229 PF03693 RHH_2: Uncharacterise 22.3 1.1E+02 0.0024 26.2 3.5 27 152-178 15-41 (80)
230 PF15437 PGBA_C: Plasminogen-b 22.2 4.6E+02 0.01 23.0 7.1 20 472-491 37-56 (86)
231 cd05524 Bromo_polybromo_I Brom 22.2 69 0.0015 28.9 2.4 26 252-277 35-60 (113)
232 KOG2689 Predicted ubiquitin re 21.8 3.1E+02 0.0067 29.1 7.2 8 419-426 82-89 (290)
233 PRK13447 F0F1 ATP synthase sub 21.7 2.3E+02 0.005 26.7 5.8 25 475-499 92-116 (136)
234 TIGR01932 hflC HflC protein. H 21.7 5E+02 0.011 27.4 9.1 15 420-434 202-216 (317)
235 PRK01005 V-type ATP synthase s 21.5 4.7E+02 0.01 26.3 8.3 59 474-532 50-114 (207)
236 PF09805 Nop25: Nucleolar prot 21.4 3.9E+02 0.0084 25.1 7.3 7 480-486 38-44 (137)
237 PF06098 Radial_spoke_3: Radia 21.3 5.3E+02 0.012 27.4 9.0 54 461-514 152-209 (291)
238 KOG0742 AAA+-type ATPase [Post 21.2 4.1E+02 0.0089 30.2 8.3 28 421-448 73-108 (630)
239 PF09831 DUF2058: Uncharacteri 21.2 5.5E+02 0.012 25.5 8.5 12 456-467 13-24 (177)
240 cd08045 TAF4 TATA Binding Prot 21.1 3.1E+02 0.0068 27.3 7.0 14 431-444 77-90 (212)
241 cd05517 Bromo_polybromo_II Bro 20.9 78 0.0017 28.1 2.4 34 243-277 25-58 (103)
242 PF07820 TraC: TraC-like prote 20.8 2.7E+02 0.0059 24.8 5.6 26 509-536 31-56 (92)
243 PRK03963 V-type ATP synthase s 20.4 7.1E+02 0.015 24.0 9.3 6 543-548 101-106 (198)
244 PRK13428 F0F1 ATP synthase sub 20.3 5.5E+02 0.012 28.7 9.4 9 440-448 29-37 (445)
245 KOG4807 F-actin binding protei 20.1 3.2E+02 0.007 30.4 7.2 29 458-486 355-383 (593)
246 PTZ00399 cysteinyl-tRNA-synthe 20.0 1.7E+02 0.0037 34.3 5.6 21 168-188 160-180 (651)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.97 E-value=4.9e-31 Score=295.33 Aligned_cols=396 Identities=23% Similarity=0.289 Sum_probs=228.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 008721 100 RPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 100 r~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (556)
..++...++++|..||..|+.|+++|||..|||++.+++||||+||++||||+||++||.++.|.++.+|..||||||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 44577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhhcccCCcCCccccccCcccccccccCCCCCCCCCCCCCCCCccchhhh
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEE 259 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~~~~~s~~~~ei~~~~~~~~k~~p~~~~v~~K~~~~~~~ 259 (556)
|++||+++++||.||..|+.+|+.+|..++..+............... ...........+..-.+... ....+.
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~- 369 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS-SDQIPSNSVEGPRSSSFESR----ESASEP- 369 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-ccccccccccCcccccchhc----ccccCc-
Confidence 999999999999999999999999999988766533222210000000 00000000000000000000 000000
Q ss_pred hhhhcccchhHHHhhhcccccccc---hHHHHHhhcCCCCCCCcccccccCC--CCC----CCccccccCCCCCCCCCcC
Q 008721 260 KAARSSYCARAVEVERAKPAQNLS---SKLVIKNLHKGTNDGGRLACNIVNA--KPP----LSPVACKSCGKCGSATCGC 330 (556)
Q Consensus 260 k~l~~~~d~~~~~~~lsk~~e~l~---~~~~~~~~~k~~~~~~~~~~~~~n~--~p~----~~~~~~~~~~~~~~~~~~~ 330 (556)
....+. +......-.+++.+. ...+...+........+.++..... .+. .+... .+ ....-..
T Consensus 370 --~~~~~~-~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~ 441 (640)
T KOG1474|consen 370 --SSELMS-EEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEK--NK---KEKAANE 441 (640)
T ss_pred --cccccc-HHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhh--hc---ccccccc
Confidence 000010 011111111111111 1112222211111111111110000 000 00000 00 0000000
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCcccccCCcCCCCCC-CCCCCcccccCCCCCCCCCCCCCCCcCccc
Q 008721 331 NLPSDSTHASSDITSERSLGGDRACSTDASKPDCQVKSTSTSQMSKSDP-DSDGAVSALDDGNLCPSSQLTPPATDSASA 409 (556)
Q Consensus 331 ~~~~~s~~~~ss~s~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~~~-~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 409 (556)
+.-.-+.... .....-..+. -++ + +..+..+.. .+ ...+.+...+..- + .+....
T Consensus 442 ~~r~~t~~~~---~~l~~~~~~~----~~p--~---~l~~~~~~~--~~~~~~~~l~~~~~~~-----~-----~~~~~v 497 (640)
T KOG1474|consen 442 NKRDMTAPEK---AKLKELLQNL----LPP--N---KLESIVEIL--KPEKRQLDLSQNDDEI-----E-----LDLDSV 497 (640)
T ss_pred cccccccccc---ccchhhccCC----CCC--c---cccCccccc--chhhhcccccccccch-----h-----hccccc
Confidence 0000000000 0000000000 000 0 000000000 00 0000000000000 0 001112
Q ss_pred cccCCC-CCcCCCChHHHHHHHHHhhhhhHHHHHHhh-hhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 410 EEWTTP-LLDVQMSPKKALRAAMLKSRFADTILKAQQ-RTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEA 487 (556)
Q Consensus 410 e~~~~~-~~~~~~sp~K~~Raa~lk~rfadtIlKA~e-k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~ 487 (556)
++|... ...-+...++.+++..+...|++-+.++++ +.+.......+|+++.+..++.+.++..++++.++.-...+.
T Consensus 498 d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 577 (640)
T KOG1474|consen 498 DGSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSEASSSSSED 577 (640)
T ss_pred ccccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhhhhhhhHHH
Confidence 222211 124577899999999999999999999999 776666777799999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhccccccccccchhHHhhhh
Q 008721 488 ASRMKAEIEL--KKQREKEREAARVALQKVKPLMCIAFQHIDLVGECCH 534 (556)
Q Consensus 488 a~~~~~~~~~--~~~~~~~~e~~r~~~~~~~~tv~i~~~n~~~~~dle~ 534 (556)
+++.++.... .+....+++.++.++..|..+++++ .+..+..+++.
T Consensus 578 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~-~~s~~~~~~~~ 625 (640)
T KOG1474|consen 578 GENKAASSGSLSPSSSSLERESNNSAEANGSSSSESS-SSSSSSSSEEG 625 (640)
T ss_pred HhhccccccccCccccccccchhHHHHhcccCccccc-cccccchhhcc
Confidence 9888776554 5566789999999999999999999 99998888876
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.2e-27 Score=212.73 Aligned_cols=107 Identities=36% Similarity=0.563 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
..|.+.|..||..|++|+.++||+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468899999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 185 ~~-~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
++ ++.||.+|..|++.|++.+..+...|.
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 899999999999999999999998885
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.2e-27 Score=207.43 Aligned_cols=102 Identities=43% Similarity=0.738 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
..-.+..||..|++|+.++||..|||+.+.++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++
T Consensus 6 ~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05497 6 LQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKP 85 (107)
T ss_pred HHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 33445788999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 008721 187 ENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i 208 (556)
+|.|+.+|..|++.|++.+..|
T Consensus 86 ~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 86 GDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998764
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=206.34 Aligned_cols=105 Identities=35% Similarity=0.606 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhh
Q 008721 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~-~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (556)
.++.+.|..++..|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 99999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 184 NPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 184 N~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
|+++|.++.+|..|++.|++.+..+.
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-26 Score=200.56 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
+++|..||+.|++++.++||..||++. .+||||++|++||||+||++||++|.|.++++|.+||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 478999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 008721 188 NNVHKMAQELNNLFDIK 204 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~ 204 (556)
+.|+.+|..|++.|.+.
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=197.61 Aligned_cols=102 Identities=38% Similarity=0.625 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
|++.+.++|..||+.|++++.+++|..||++....+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.
T Consensus 1 ~t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred CCHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 008721 183 YNPPENNVHKMAQELNNLFDIK 204 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~ 204 (556)
||+++|.++.+|..|++.|++.
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.5e-26 Score=196.89 Aligned_cols=96 Identities=32% Similarity=0.704 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
+.+|..||..|+.++.+++|+.||++. .+|+||++|++||||+||++||.+|.|.++++|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008721 188 NNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~~ 205 (556)
+.++.+|..|++.|++.|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 8
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.8e-25 Score=197.41 Aligned_cols=101 Identities=30% Similarity=0.475 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
+.|.+.|..|++.|+.|+.++||..||++. .+||||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLFDIKWKS 207 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~k~ 207 (556)
++++.++.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887764
No 9
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=195.51 Aligned_cols=98 Identities=60% Similarity=1.090 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008721 188 NNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~~ 205 (556)
|.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3e-25 Score=197.12 Aligned_cols=104 Identities=34% Similarity=0.643 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHH
Q 008721 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DvrLIf~N 179 (556)
|++..++.|..||..|++|+.++||..||++ .+|+||++|++||||+||++||++ |.|.++++|..||+|||.|
T Consensus 1 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 1 LSPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKN 77 (109)
T ss_pred CCHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999997 599999999999999999999999 5999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
|+.||++++.++.+|..|++.|++.+..+.
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998864
No 11
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.3e-25 Score=200.14 Aligned_cols=103 Identities=37% Similarity=0.714 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
...+..|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345699999999999999999999999965 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 185 PPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
+++|.++.+|..|+++|++.++.+.
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 12
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=194.75 Aligned_cols=98 Identities=48% Similarity=0.878 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 108 ~k~c~~IL~~L~~~---~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
++.|..||+.|+++ +.+++|..||++....+||||++|++||||++|++||.+|.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 889999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~ 205 (556)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.7e-25 Score=197.46 Aligned_cols=103 Identities=28% Similarity=0.432 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhh
Q 008721 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~-~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (556)
.++...|..||..|+++ +.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999 8999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHhH
Q 008721 184 NPPEN-NVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 184 N~~~S-~V~~~A~~Lek~Fek~~k~i~ 209 (556)
|++++ .++.+|..|++.|+..+..|+
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 99865 688999999999999998875
No 14
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.2e-25 Score=193.20 Aligned_cols=98 Identities=46% Similarity=0.851 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 108 ~k~c~~IL~~L~~~---~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
++.|..||..|+++ +.++||+.||++....+||||++|++||||++|++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 47899999999995 579999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~ 205 (556)
++++.++.+|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 15
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.7e-25 Score=192.48 Aligned_cols=96 Identities=26% Similarity=0.521 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
++...|..++..|. |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||+
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34567788888888 99999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 008721 186 PENNVHKMAQELNNLFDIK 204 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~ 204 (556)
++|.++.+|..|.+.|...
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=8e-25 Score=191.43 Aligned_cols=100 Identities=41% Similarity=0.712 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
++.+|..|++.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999999999999987 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 008721 187 ENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i 208 (556)
++.++.+|..|+..|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988764
No 17
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.5e-24 Score=191.24 Aligned_cols=97 Identities=28% Similarity=0.470 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
.+..|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999663 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 008721 187 ENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i 208 (556)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=190.88 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008721 107 VTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (556)
+.+.|..||+.|+.+.+ ++||..||+.. .+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999876 89999998865 89999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 008721 181 MLYNPPENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 181 ~~YN~~~S~V~~~A~~Lek~Fek~~k~i 208 (556)
+.||+++|.||.+|..|++.|.+.++++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988764
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.5e-24 Score=190.36 Aligned_cols=103 Identities=33% Similarity=0.631 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCC
Q 008721 109 HQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEN 188 (556)
Q Consensus 109 k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S 188 (556)
..+..|+..|++++.+++|..||++. .+|+||++|++||||+||++||.++.|.++++|..||+|||.||+.||++++
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35788999999999999999999987 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 189 NVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 189 ~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
.++.+|..|.+.|...+..+++++.
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999988765
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=6.1e-24 Score=190.26 Aligned_cols=104 Identities=31% Similarity=0.501 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
+++...|..|++.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 356678899999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHHHhHh
Q 008721 185 PPE----NNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 185 ~~~----S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
+++ +.|+.+|..|++.|...+..+.+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 994 69999999999999999887654
No 21
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.3e-24 Score=185.64 Aligned_cols=92 Identities=32% Similarity=0.439 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
...|..|++.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 468899999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 008721 188 NNVHKMAQELNNLF 201 (556)
Q Consensus 188 S~V~~~A~~Lek~F 201 (556)
+.+|.+|..|...-
T Consensus 81 s~~~~~A~~L~~~~ 94 (98)
T cd05513 81 TIYYKAAKKLLHSG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999997654
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=183.78 Aligned_cols=91 Identities=27% Similarity=0.500 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
...|..+|..|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 357889999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 008721 188 NNVHKMAQELNNL 200 (556)
Q Consensus 188 S~V~~~A~~Lek~ 200 (556)
+.+|++|..|++.
T Consensus 81 s~~~~~A~~l~~~ 93 (98)
T cd05512 81 TIFYRAAVRLRDQ 93 (98)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 23
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7.7e-23 Score=180.91 Aligned_cols=97 Identities=25% Similarity=0.466 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 108 ~k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
+++|..|++.|..+ +.+++|+.||+.. ++||||++|++||||+||++||.++.|.++++|..||.|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888888876 4578999998865 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKWK 206 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~k 206 (556)
+||+++|.+|.+|..|++.|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=8.9e-23 Score=179.64 Aligned_cols=96 Identities=27% Similarity=0.431 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 108 ~k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
.+.|..|++.|+.+ +.+++|..||+.. .+||||++|++||||++|++||++|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999955 4589999998855 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~ 205 (556)
.||++++.++.+|..|++.|...+
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 25
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.9e-22 Score=183.31 Aligned_cols=106 Identities=29% Similarity=0.434 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHHHHH---cCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008721 101 PKMDRGVTHQCSVILKSLM---MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (556)
Q Consensus 101 ~~l~~~~~k~c~~IL~~L~---~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (556)
..+.......|..++..|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++++|..||+|||
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLIL 97 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4567788899999999999 8999999999999764 69999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 008721 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKS 207 (556)
Q Consensus 178 ~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~ 207 (556)
.||++||++++.++.+|..|++.|...+..
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999987753
No 26
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=181.16 Aligned_cols=101 Identities=25% Similarity=0.398 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 108 THQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
+.+|..|++.|+++.. +.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 5799999999997643 568999777 44899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
.||+++|.+|.+|..|++.|++.+.++..
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999887753
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=3.8e-22 Score=174.21 Aligned_cols=101 Identities=43% Similarity=0.736 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
......|..|+..+.+++.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|..||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456688999999999999999999999976 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLFDIKWKS 207 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~k~ 207 (556)
++++.++.+|..|.+.|+..|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.2e-22 Score=177.61 Aligned_cols=92 Identities=27% Similarity=0.426 Sum_probs=83.5
Q ss_pred HHHHHHHHHcC------CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 111 CSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 111 c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
+..|++.|+.+ +.++||..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~--~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKR--KYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcc--cCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45566666655 4588999998855 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLFDIK 204 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~ 204 (556)
++++.+|.+|..|+++|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999863
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.1e-22 Score=176.68 Aligned_cols=94 Identities=26% Similarity=0.487 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 108 THQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
++.|..|+..|+.+.+ +++|..+++.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~--~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKV--LYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCC--CCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999988744 69999987754 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 008721 182 LYNPPENNVHKMAQELNNLFDI 203 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek 203 (556)
.||+++|.++.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.3e-22 Score=176.55 Aligned_cols=94 Identities=26% Similarity=0.421 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 109 HQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 109 k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
+++..|++.|... +.+.+|+.+|+.. .+||||++|++||||+||++||.++.|.++++|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677777777665 5588999988865 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 008721 183 YNPPENNVHKMAQELNNLFDIK 204 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~ 204 (556)
||+++|.|+.+|..|+++|...
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.1e-22 Score=176.26 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008721 107 VTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (556)
+...|..|++.|..+.+ +++|..+++. ..+||||++|++||||+||++||.+|.|.++++|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k--~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSK--KKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCc--ccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45678888888887643 6999998774 489999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 008721 181 MLYNPPENNVHKMAQELNNLFDIK 204 (556)
Q Consensus 181 ~~YN~~~S~V~~~A~~Lek~Fek~ 204 (556)
+.||+++|.++.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=4.7e-21 Score=160.42 Aligned_cols=84 Identities=48% Similarity=0.882 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHH
Q 008721 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (556)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V 190 (556)
|..||+.|++++.+++|..||++. .+|+|+.+|++||||.+|++||.+|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 889999999999999999999766 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008721 191 HKMAQE 196 (556)
Q Consensus 191 ~~~A~~ 196 (556)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999964
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.4e-21 Score=168.09 Aligned_cols=93 Identities=30% Similarity=0.448 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 109 HQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 109 k~c~~IL~~L~~------~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
.++..|+..|.+ ++.+++|..+|+.. .+||||++|++||||++|++||.++.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666666665 36689999999865 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 008721 183 YNPPENNVHKMAQELNNLFDI 203 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek 203 (556)
||++++.++.+|..|++.|+.
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=7e-21 Score=160.82 Aligned_cols=95 Identities=40% Similarity=0.635 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 109 HQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 109 k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
..|..|+..|..+ +.+++|..||++. .+|+||.+|++||||.+|+.||.+|.|.++.+|.+||++||.||+.||++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999 9999999999975 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 008721 187 ENNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~ 205 (556)
++.++.+|..|...|++.+
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.5e-20 Score=167.74 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=88.6
Q ss_pred HHHHHHHHHc-CCCCCCCCCCCC---CCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 111 CSVILKSLMM-HPAGWVFNRPVD---PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 111 c~~IL~~L~~-~~~s~pF~~PVd---p~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
+..++..+.+ .|.++||+.||. +.+.++|+||.+|++||||+||++||.+|.|.++++|..||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4456666666 577899999998 444459999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhH
Q 008721 187 ENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
+|.++.+|..|...+...+.+|.
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988887764
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.3e-20 Score=165.71 Aligned_cols=95 Identities=29% Similarity=0.392 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 108 THQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
.++|..|++.|+.... +.+|..+++ +..+||||++|++||||+||++||.+ |.++++|..||.|||.||+
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 4688999999987744 468997665 44899999999999999999999998 9999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKWK 206 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~k 206 (556)
.||++++.+|.+|..|++.|...+.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988653
No 37
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.74 E-value=7.2e-18 Score=178.46 Aligned_cols=149 Identities=26% Similarity=0.308 Sum_probs=109.7
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 008721 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201 (556)
Q Consensus 122 ~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~F 201 (556)
..+++|+.+|+ +..+|+||.||+.||||++|+++|.++.|.++++|..|++|||.||.+||++++.|+.+|..|++.|
T Consensus 164 ~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 55788888766 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhcccCCcCCccccccCcccccccccCCCCCCCCCCCCCCCCccchhhhhhhhcccchhHHHhh
Q 008721 202 DIKWKSLEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVE 274 (556)
Q Consensus 202 ek~~k~i~~k~~~~~~~~~~~~~~s~~~~ei~~~~~~~~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ 274 (556)
...+..++..........+.. ...................|++-.. ..+...|++++.+...++.++.+..
T Consensus 242 ~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~ 312 (371)
T COG5076 242 LKLIEEIPEEMLELSIKPGRE-EREERESVLITNSQAHVGAWPFLRP-VSDEEVPDYYKDIRDPMDLSTKELK 312 (371)
T ss_pred HHHHHhccccchhhccCcccc-ccccchhhccccccccccccccccc-CCcccccchhhhhhcccccccchhh
Confidence 999998876654322222211 1111111111122344444554333 3355577888888888876654433
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=1.5e-17 Score=148.67 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 008721 106 GVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (556)
.++..+..|+..|++|.+ +.+|.+.+. ..|+||.+|+.||||++|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 456788999999999853 778988554 3588999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
|++||.++|.||.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887764
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.6e-17 Score=198.17 Aligned_cols=95 Identities=37% Similarity=0.839 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHH
Q 008721 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (556)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V 190 (556)
|..||..|+.|+.+|||+.||++. .+||||+||++||||.||+.|+..|.|.++++|..||.|||.||.+||.+ |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999987 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008721 191 HKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 191 ~~~A~~Lek~Fek~~k~i 208 (556)
+.....|.++|++.|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999977754
No 40
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.53 E-value=1.4e-14 Score=167.86 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
...+..|++++...++..+|..||+.. .++|||.||+.||||+++++.+....|.+.++|+.|+.||++|..+||++.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 357788999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHhhhcccCCc------CCccccccCcccccccccCCCCCCCCCCCCCCCCccchhhhhh
Q 008721 188 NNVHKMAQELNNLFDIKWKSLEEKWSSEVPK------AGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEEKA 261 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~~------~~~~~~~s~~~~ei~~~~~~~~k~~p~~~~v~~K~~~~~~~k~ 261 (556)
+.++..+..+...+...|..-++++...... ......+ .....+.......|++||||.+|.+|++. +||++
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~-~yy~k 1418 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVP-DYYKK 1418 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhch-HHHHH
Confidence 9999999999998888887766554321100 1111112 34455555688999999999999977655 99999
Q ss_pred hhcccchhHHHhhhcccc
Q 008721 262 ARSSYCARAVEVERAKPA 279 (556)
Q Consensus 262 l~~~~d~~~~~~~lsk~~ 279 (556)
|+.+||+++|.+++..|-
T Consensus 1419 ik~pmdl~~i~~n~~~~~ 1436 (1563)
T KOG0008|consen 1419 IKNPMDLETILKNIPPHK 1436 (1563)
T ss_pred hcChhhHHHHhhcCCccc
Confidence 999999999988876553
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=5.2e-14 Score=157.84 Aligned_cols=103 Identities=35% Similarity=0.589 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
........+|..|..|..+|||.+||+.. ++||||.+|++||||.||+.+|..+.|..+..|+.|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 34567889999999999999999999976 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 186 PENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
.++.+|+.|..|...|...+.....
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccchheecccchhhhhcchhhhhhh
Confidence 9999999999999999888876643
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.30 E-value=1.3e-12 Score=117.64 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHH
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNL-------YSVSDEFVADVRLTFS 178 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~-------Y~S~~EF~~DvrLIf~ 178 (556)
+....|..+|..++.++.+|||..||++.+..+||||++|++||||+||+++|.++. |.--..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 345677888888888889999999999976799999999999999999999999974 4444555666666666
Q ss_pred HhhhhCC
Q 008721 179 NAMLYNP 185 (556)
Q Consensus 179 NA~~YN~ 185 (556)
||..||.
T Consensus 83 ~~~~~~~ 89 (114)
T cd05494 83 RRSPSNI 89 (114)
T ss_pred ccCcccc
Confidence 6666665
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.29 E-value=6.7e-13 Score=154.14 Aligned_cols=156 Identities=23% Similarity=0.366 Sum_probs=130.9
Q ss_pred hcccCCCccCCCCCcccccccccccCCCCcCCcCCCccccCCCCCCCCCCCHHHHHHH---HHHHHHHHcCCCCCCCCCC
Q 008721 54 QLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQC---SVILKSLMMHPAGWVFNRP 130 (556)
Q Consensus 54 Q~~~d~~~~~~g~~~~i~s~a~k~~~~~~~~~kr~~~~~~~~~kkkr~~l~~~~~k~c---~~IL~~L~~~~~s~pF~~P 130 (556)
-+|.+++..|+|..+.++..+..+....-...+.+....+...+...+.|++..+-.+ ..++.+++.-+.+|+|++|
T Consensus 1327 ~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~~ 1406 (1563)
T KOG0008|consen 1327 PLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHEP 1406 (1563)
T ss_pred HHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhHhhhhhHHHHHHhcchhcccccc
Confidence 4688999999999999988887777776666666666777777778888887765444 3455566667999999999
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 131 VDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 131 Vdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
|+.. .+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+.++.+...|+.+-.+....+.+...
T Consensus 1407 v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~~~ 1484 (1563)
T KOG0008|consen 1407 VNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLLEYIE 1484 (1563)
T ss_pred cchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHHHHHHH
Confidence 9977 69999999999999999999999999999999999999999999999999999998888887777666665443
Q ss_pred h
Q 008721 211 K 211 (556)
Q Consensus 211 k 211 (556)
.
T Consensus 1485 ~ 1485 (1563)
T KOG0008|consen 1485 H 1485 (1563)
T ss_pred H
Confidence 3
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.96 E-value=5.5e-10 Score=101.05 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 146 SKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 146 k~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
-.||||+||++||.+|.|.++++|++||+|||.||++||+++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 368999999999999999999999999999999999999874
No 45
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.95 E-value=9.3e-10 Score=128.55 Aligned_cols=102 Identities=30% Similarity=0.494 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
.+.++.++..+...+....|..|||+. ++|||+++|++||||.||+.++..+.|.++++|..|+.||..||+.||..+
T Consensus 567 ~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~d 644 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKD 644 (1051)
T ss_pred HHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccC
Confidence 466778899999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 188 NNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
+.+|..|..+++.....+......
T Consensus 645 tv~~r~av~~~e~~~~~~~~arke 668 (1051)
T KOG0955|consen 645 TVYYRAAVRLRELIKKDFRNARKE 668 (1051)
T ss_pred eehHhhhHHHHhhhhhHHHhcccc
Confidence 999999999999988877766433
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.84 E-value=4.1e-09 Score=121.01 Aligned_cols=100 Identities=26% Similarity=0.406 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 109 HQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 109 k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
+.|..|+....++. .+..|..... +..+||||.||+.||++..|.++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s--~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPS--RKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcc--cccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77888888888663 4678988544 558999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 183 YNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
||..+|.||.+|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888875
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.80 E-value=9.9e-09 Score=114.43 Aligned_cols=103 Identities=25% Similarity=0.366 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008721 102 KMDRGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRL 175 (556)
Q Consensus 102 ~l~~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrL 175 (556)
.++...+.++..||..+..+.+ ...|.+..+ ++..|+||.+|..||+|..|++|+..+.|.+.+.|..|+.|
T Consensus 48 ~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~--~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 48 VIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPS--RKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccChHHHHHHHHHHHHHHhhccccCcccchhHhhccc--cccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3466777888999999888733 667888544 56899999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 008721 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206 (556)
Q Consensus 176 If~NA~~YN~~~S~V~~~A~~Lek~Fek~~k 206 (556)
||.||+.||.+++.+++++..|+..|.....
T Consensus 126 m~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999999988654
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.57 E-value=1.1e-08 Score=115.98 Aligned_cols=93 Identities=40% Similarity=0.755 Sum_probs=86.1
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHH
Q 008721 116 KSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQ 195 (556)
Q Consensus 116 ~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~ 195 (556)
+.+..|.++|+|..||+.+.+.+|+||.+|++|||++||..++.++.|.+..+..+|+..+|.||..||..+..|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 008721 196 ELNNLFDIKWKSL 208 (556)
Q Consensus 196 ~Lek~Fek~~k~i 208 (556)
.++..|...+..+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999987555544
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.54 E-value=5.4e-08 Score=110.14 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
..++....|. .+.++++|..||+.. ..|+||.||+-||||.|+.+++..+.|.+.++|+.|+.+||.||..
T Consensus 290 ~~~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~ 360 (720)
T KOG1472|consen 290 GQEELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEK 360 (720)
T ss_pred cCHHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchh
Confidence 3444555555 488999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCH
Q 008721 183 YNPPENN 189 (556)
Q Consensus 183 YN~~~S~ 189 (556)
||...+.
T Consensus 361 ~n~ee~~ 367 (720)
T KOG1472|consen 361 YNSEESH 367 (720)
T ss_pred hccccch
Confidence 9986543
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.00 E-value=9.9e-07 Score=93.25 Aligned_cols=95 Identities=26% Similarity=0.260 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCH
Q 008721 110 QCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENN 189 (556)
Q Consensus 110 ~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~ 189 (556)
..+.++..+.+...-..|..||.+. -.|+|.+||+.|||+.|++.|++.++|.+..+|..|.++|..||..||..++.
T Consensus 23 ~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 23 DAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred hHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcc
Confidence 3445666666666677888889877 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008721 190 VHKMAQELNNLFDIKWK 206 (556)
Q Consensus 190 V~~~A~~Lek~Fek~~k 206 (556)
++..|.+|..+-.....
T Consensus 101 ~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 101 PIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccchhhcchhh
Confidence 99999999887665554
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.91 E-value=7.8e-06 Score=86.63 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=73.9
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHH
Q 008721 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKM 193 (556)
Q Consensus 114 IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~ 193 (556)
...++........|..||... .+|.|..+|++|+|++|++.|..++.|.| -+|..|+.||+.||++||.+...+|..
T Consensus 216 q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 344555556788899988866 79999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 008721 194 AQELNN 199 (556)
Q Consensus 194 A~~Lek 199 (556)
|..+.-
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 887655
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.44 E-value=1.6e-05 Score=84.76 Aligned_cols=154 Identities=25% Similarity=0.393 Sum_probs=109.5
Q ss_pred hhhhhcccCCCccCCCCCcccccccccccCCCCcCCcCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCC
Q 008721 50 AESNQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNR 129 (556)
Q Consensus 50 ~~~nQ~~~d~~~~~~g~~~~i~s~a~k~~~~~~~~~kr~~~~~~~~~kkkr~~l~~~~~k~c~~IL~~L~~~~~s~pF~~ 129 (556)
-..-++|.+|...+|+..+.....+...........+.-+............. . ...+-..++.....+...|+|..
T Consensus 210 ~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~~ 286 (371)
T COG5076 210 VSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE-E--REERESVLITNSQAHVGAWPFLR 286 (371)
T ss_pred HHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhhccCcccc-c--cccchhhcccccccccccccccc
Confidence 45678899999999987765444433322211111111111111111000000 0 00133445555677888999999
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 008721 130 PVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 130 PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i 208 (556)
++... ..|+|+++|..+|++.+.+.++..+.|....+|..|..++|.||..||+....++..+..+..++...+..+
T Consensus 287 ~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 287 PVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred cCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 99976 799999999999999999999999999999999999999999999999999999999999999888766654
No 53
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.13 E-value=0.0063 Score=72.78 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 008721 185 PPENNVHKMAQELNNLF 201 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~F 201 (556)
.+.++||..+..|..++
T Consensus 221 s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 221 DDKSDMWALGCIIYELC 237 (1021)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 34567777777766554
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0019 Score=73.73 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008721 461 QQEKERLEQRQRE-----EKARIEAQIKAAEAASRM--------KAEIELKKQREKEREAARVALQKVKP 517 (556)
Q Consensus 461 ~~e~~~~e~~~~e-----e~ar~~a~~~a~e~a~~~--------~~~~~~~~~~~~~~e~~r~~~~~~~~ 517 (556)
|+|+||+|+.+|| |++|.|+|+|++.+-.++ ++.||+|+++-.+||+||++|++|.+
T Consensus 341 qreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 341 QREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666555555 455666666666544332 12445555555677899999988865
No 55
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.50 E-value=0.0086 Score=71.69 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 463 EKERLEQRQREEKARIEAQIKAAEAASRMK 492 (556)
Q Consensus 463 e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~ 492 (556)
|+.|.|+++|+|+.|+|.|++..|+++|.+
T Consensus 469 er~Erer~er~erer~Erer~erEr~erer 498 (1021)
T PTZ00266 469 ERLERERMERIERERLERERLERERLERDR 498 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555554444433
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.014 Score=66.91 Aligned_cols=19 Identities=53% Similarity=0.510 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008721 493 AEIELKKQREKEREAARVA 511 (556)
Q Consensus 493 ~~~~~~~~~~~~~e~~r~~ 511 (556)
+.+|..++|.+|=|++|.+
T Consensus 401 ar~ElEkqRqlewErar~q 419 (1118)
T KOG1029|consen 401 AREELEKQRQLEWERARRQ 419 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555565666544
No 57
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.13 E-value=0.0099 Score=55.33 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 148 PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
|.||+.|++|+..|.|.++.+|.+||..|+.-++.=.+....+-+.-..+..+|.+.+..+-.-++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999988876665555555555666777777776654443
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=96.02 E-value=0.013 Score=66.13 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHhhccccccccccchhHHhhhhhcC-
Q 008721 463 EKERLEQRQRE--EKARIEAQIKAAEAASRMKAE-IELKKQREKE-REAARVALQKVKPLMCIAFQHIDLVGECCHLCY- 537 (556)
Q Consensus 463 e~~~~e~~~~e--e~ar~~a~~~a~e~a~~~~~~-~~~~~~~~~~-~e~~r~~~~~~~~tv~i~~~n~~~~~dle~l~~- 537 (556)
||-+.|.++|. .+.|+++|+|+.|+|++++++ +++.++|.++ .+++-.|-++|+....-+ ..+-|..-||-++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 88 (567)
T PLN03086 10 EKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESLQAG-RGIVFSRIFEAVSFQ 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeeccccC
Confidence 33333333333 345678999997777776654 3455555543 446666888999888888 88888777777654
Q ss_pred -----CCchhhHH-HHHhhcc
Q 008721 538 -----LSSPFRWK-ELLRLNT 552 (556)
Q Consensus 538 -----~~~~~~~~-~~~~~~~ 552 (556)
+.+|-.+- .|.++|.
T Consensus 89 ~~GdKI~LPpSaL~~L~~~~~ 109 (567)
T PLN03086 89 GNGDKIKLPPSCFTELSDQGA 109 (567)
T ss_pred CCCCeEEcCHHHHHHHHhcCC
Confidence 34555543 3666654
No 59
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.90 E-value=0.016 Score=66.46 Aligned_cols=59 Identities=32% Similarity=0.424 Sum_probs=37.9
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 008721 453 DKADPVKLQQEKERLEQRQREEKARIEAQI----KAAEAASRMKAEIE--------LKKQREKEREAARVA 511 (556)
Q Consensus 453 ~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~----~a~e~a~~~~~~~~--------~~~~~~~~~e~~r~~ 511 (556)
+-+.-||-++|-||.+||+.||++|.++|+ |++|+.+.+++++| ++..+|.|.|+.|+.
T Consensus 931 E~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 931 ELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888899988888887764 33344333333333 455566666666665
No 60
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.54 Score=54.96 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=40.9
Q ss_pred HhhhhhhccCCCCChhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh---
Q 008721 443 AQQRTLLDHGDKADPVKLQQEKER--LEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKE---REAARVALQK--- 514 (556)
Q Consensus 443 A~ek~ll~~g~k~dp~~~~~e~~~--~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~---~e~~r~~~~~--- 514 (556)
||.+.+ . ..|.|-|+++-++|. ..++..+.++-.+||.++..++... .+..|..+|.+ .+..+.++++
T Consensus 568 aRk~li-E-~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~E--re~~R~l~E~e~i~~k~~ke~~~~~~~ 643 (988)
T KOG2072|consen 568 ARKSLI-E-KRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKE--REAKRILREKEAIRKKELKERLEQLKQ 643 (988)
T ss_pred HHHHHH-H-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 3 355666666555444 4444444444444444444333222 22223333333 2233333333
Q ss_pred ----hccccccccccchhHHhhhhhcCC
Q 008721 515 ----VKPLMCIAFQHIDLVGECCHLCYL 538 (556)
Q Consensus 515 ----~~~tv~i~~~n~~~~~dle~l~~~ 538 (556)
|+..++|| ++||+.|-.-
T Consensus 644 te~~aK~~k~~d------~ed~e~lD~d 665 (988)
T KOG2072|consen 644 TEVGAKGGKEKD------LEDLEKLDAD 665 (988)
T ss_pred HHHHHhccccCC------hHHhhhcCHH
Confidence 56778888 6777766443
No 61
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.65 Score=54.09 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 461 QQEKERLEQRQREEKARIEAQIKAAEAAS 489 (556)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~~~a~e~a~ 489 (556)
++|+||..|++.||++|.+.+-+++|+|+
T Consensus 234 kreeEE~~r~eeEEer~~ee~E~~~eEak 262 (1064)
T KOG1144|consen 234 KREEEERLRREEEEERRREEEEAQEEEAK 262 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333333
No 62
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.52 E-value=0.21 Score=58.32 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHH
Q 008721 145 ISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205 (556)
Q Consensus 145 Ik~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~ 205 (556)
-.-|..|..|..+|++++|.+.+.|..|+-.|..||.+|.+-+.-+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4568999999999999999999999999999999999999988877777777777766543
No 63
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=1.4 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc
Q 008721 497 LKKQREKEREAARVALQKVKPLMCIA 522 (556)
Q Consensus 497 ~~~~~~~~~e~~r~~~~~~~~tv~i~ 522 (556)
+|+.||.+..++-.+..+|+..+-|+
T Consensus 161 ~RkakEE~arkeheEylkmKaaFsVe 186 (299)
T KOG3054|consen 161 ERKAKEEEARKEHEEYLKMKAAFSVE 186 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeec
Confidence 33344333333455667776655444
No 64
>PTZ00121 MAEBL; Provisional
Probab=89.38 E-value=1.6 Score=53.85 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=10.3
Q ss_pred HHHhhhhhHHHHHHhh
Q 008721 430 AMLKSRFADTILKAQQ 445 (556)
Q Consensus 430 a~lk~rfadtIlKA~e 445 (556)
|+.|.++|-.+--||.
T Consensus 1120 ~~~r~e~arr~eeARr 1135 (2084)
T PTZ00121 1120 AKKKAEDARKAEEARK 1135 (2084)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566667766666664
No 65
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=88.30 E-value=1.8 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008721 461 QQEKERLEQRQREEKARIEAQIK 483 (556)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~~~ 483 (556)
++|.||.+.|++||+.|+++|-+
T Consensus 226 ~qe~eE~qkreeEE~~r~eeEEe 248 (1064)
T KOG1144|consen 226 RQEEEERQKREEEERLRREEEEE 248 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666655443
No 66
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.37 Score=58.07 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCC---CCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHhhhhCCCC
Q 008721 122 PAGWVFNRPVDPVKLD---IPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA--DVRLTFSNAMLYNPPE 187 (556)
Q Consensus 122 ~~s~pF~~PVdp~k~~---vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~--DvrLIf~NA~~YN~~~ 187 (556)
..+..|-.|+.+.... +++|-.+|+.|||+...-.++..+.|.++.+|.. ++.|||.|+..||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3367788888854322 4699999999999999999999999999999999 9999999999999965
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.51 E-value=34 Score=40.33 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhhhccC---CCCChhhhHHHHHHHHH
Q 008721 425 KALRAAMLKSRFADTILKAQQRTLLDHG---DKADPVKLQQEKERLEQ 469 (556)
Q Consensus 425 K~~Raa~lk~rfadtIlKA~ek~ll~~g---~k~dp~~~~~e~~~~e~ 469 (556)
|.||+-|=-.|=.+.=|.-|--- |..+ -|.+..-||+|-|+|+.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~-l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISS-LTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777433 2333 34555666766666655
No 68
>PTZ00121 MAEBL; Provisional
Probab=84.41 E-value=3.1 Score=51.60 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.3
Q ss_pred CCCcccccC
Q 008721 137 DIPDYFSII 145 (556)
Q Consensus 137 ~vPDYy~II 145 (556)
..|.|-..|
T Consensus 670 SCPNYGK~i 678 (2084)
T PTZ00121 670 SCPNYGKAI 678 (2084)
T ss_pred CCCCCCceE
Confidence 467887766
No 69
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=83.81 E-value=5 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=11.8
Q ss_pred ccCCCCChhhhHHHHHHHH
Q 008721 450 DHGDKADPVKLQQEKERLE 468 (556)
Q Consensus 450 ~~g~k~dp~~~~~e~~~~e 468 (556)
+.-.+.||..+.+..|.++
T Consensus 68 ~~~~~~dpd~v~~rqEa~e 86 (190)
T PF06936_consen 68 DAAAKKDPDVVVRRQEAME 86 (190)
T ss_dssp HHHHTTSHHHHHHHHHHHH
T ss_pred hhhhhcChhHHHHHHHHHH
Confidence 3445678877766555554
No 70
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=83.60 E-value=36 Score=35.24 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008721 476 ARIEAQIKAAEAASRMKA 493 (556)
Q Consensus 476 ar~~a~~~a~e~a~~~~~ 493 (556)
+++|++.+.++++.|++.
T Consensus 113 ~~~E~~k~~~e~e~Rk~l 130 (264)
T PF13904_consen 113 QKEEREKQEEEKEERKRL 130 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 71
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=83.51 E-value=4 Score=47.06 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH--HHHHhhccccccccccchhHHhhhhhcCCCchhh
Q 008721 498 KKQREKEREAAR--VALQKVKPLMCIAFQHIDLVGECCHLCYLSSPFR 543 (556)
Q Consensus 498 ~~~~~~~~e~~r--~~~~~~~~tv~i~~~n~~~~~dle~l~~~~~~~~ 543 (556)
+++++.|+|..| .+-++|+|--+-+ .--.||+..|.+..-+...|
T Consensus 307 KqqkekEkeEKrrKdE~Ek~kKqeek~-KR~k~~Erkee~~rk~deer 353 (811)
T KOG4364|consen 307 KQQKEKEKEEKRRKDEQEKLKKQEEKQ-KRAKIMERKEEKSRKSDEER 353 (811)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhh
Confidence 334444444332 3445666666666 55666666666655544443
No 72
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.02 E-value=6.2 Score=46.33 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 008721 193 MAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 193 ~A~~Lek~Fek~~k~i~~ 210 (556)
+-..|+.+|.+.+-+-+.
T Consensus 477 CNEKLQ~FFNerILkeEQ 494 (1259)
T KOG0163|consen 477 CNEKLQKFFNERILKEEQ 494 (1259)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777776655443
No 73
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=82.89 E-value=6.8 Score=38.30 Aligned_cols=55 Identities=33% Similarity=0.415 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hhcccc
Q 008721 465 ERLEQRQREEKARI-----EAQIKAAEAASRMKAEIELKKQRE-KEREAARVALQ-KVKPLM 519 (556)
Q Consensus 465 ~~~e~~~~ee~ar~-----~a~~~a~e~a~~~~~~~~~~~~~~-~~~e~~r~~~~-~~~~tv 519 (556)
++..+..+++..+| +|+++|.|+|.+++.+.+..++.+ .||-.-+..|+ =|.+|=
T Consensus 95 ee~~~~e~Ee~e~~~kQkeeae~ka~EeAek~r~ErE~~~~q~eqERleRKKRiEEIMKRTR 156 (171)
T PF05672_consen 95 EEKERKEQEEQERLQKQKEEAEAKAREEAEKQRKERERIMQQEEQERLERKKRIEEIMKRTR 156 (171)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555 577888888877776666554444 33332223332 266553
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=82.33 E-value=4.6 Score=48.38 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 472 REEKARIEAQIKAAEAASRMKAEIELK 498 (556)
Q Consensus 472 ~ee~ar~~a~~~a~e~a~~~~~~~~~~ 498 (556)
+++.|+++ +-+|+|+|+++|++++
T Consensus 843 ~~~~a~~~---~~~ee~~r~~eee~~~ 866 (1018)
T KOG2002|consen 843 KEEEALIE---KELEEARRKEEEEKAR 866 (1018)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44444444 4455566666655543
No 75
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=82.26 E-value=20 Score=35.67 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=34.0
Q ss_pred CcCCCChHHHHHHHHHhhhhhHH--HHHHhh-----hhhhccCCCCChh
Q 008721 417 LDVQMSPKKALRAAMLKSRFADT--ILKAQQ-----RTLLDHGDKADPV 458 (556)
Q Consensus 417 ~~~~~sp~K~~Raa~lk~rfadt--IlKA~e-----k~ll~~g~k~dp~ 458 (556)
+..|-.|++.|+|||||.--+|. |+|-|+ -.|+++|--||=.
T Consensus 64 ~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGDd~ 112 (190)
T PF09802_consen 64 EKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGDDL 112 (190)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccHHH
Confidence 34578899999999999887774 778777 5678999988874
No 76
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.46 E-value=6.1 Score=40.72 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 464 KERLEQRQREEKARIEAQIKAAEAASRMKAEIELK 498 (556)
Q Consensus 464 ~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~ 498 (556)
.+|.|+.+.||+++.||+.++ |++.|++-+++++
T Consensus 137 ~eE~erKkdEeR~~eEae~k~-ee~~RkakEE~ar 170 (299)
T KOG3054|consen 137 YEEAERKKDEERLAEEAELKE-EEKERKAKEEEAR 170 (299)
T ss_pred HHHHHHhhhHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 577788888888888888888 4444444444443
No 77
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=80.13 E-value=0.91 Score=53.97 Aligned_cols=38 Identities=45% Similarity=0.568 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 473 EEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVA 511 (556)
Q Consensus 473 ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~ 511 (556)
-||+|.|||.+|.|+..|.++.+. .+.||+|||++|++
T Consensus 588 ~ek~RReaEq~~reerERer~~e~-~rerer~~~~~r~~ 625 (982)
T PF03154_consen 588 VEKARREAEQRAREERERERERER-EREREREREAERAA 625 (982)
T ss_pred HHHHHhhhhccchhhhhhcccccc-hhhhhhhhhhhhhh
Confidence 367899999988877666654322 34444445554444
No 78
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=80.10 E-value=7.8 Score=40.68 Aligned_cols=18 Identities=61% Similarity=0.667 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008721 462 QEKERLEQRQREEKARIE 479 (556)
Q Consensus 462 ~e~~~~e~~~~ee~ar~~ 479 (556)
||+.+||+...|||.|++
T Consensus 331 qekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 331 QEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666665
No 79
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=79.31 E-value=7.1 Score=44.19 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=23.3
Q ss_pred ChhhhHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHHHHHH
Q 008721 456 DPVKLQQEKERLE----QRQREEKARIEAQIKAA--EAASRMKA 493 (556)
Q Consensus 456 dp~~~~~e~~~~e----~~~~ee~ar~~a~~~a~--e~a~~~~~ 493 (556)
.-..+++++++.| +++++|++|+|||++++ +++.|+++
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~ 241 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKE 241 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666665544 55667888999887765 33444443
No 80
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=76.86 E-value=9.4 Score=43.51 Aligned_cols=12 Identities=17% Similarity=-0.119 Sum_probs=5.6
Q ss_pred chhHHhhhhhcC
Q 008721 526 IDLVGECCHLCY 537 (556)
Q Consensus 526 ~~~~~dle~l~~ 537 (556)
-+|..+-|.|+.
T Consensus 691 eRihreReelRr 702 (940)
T KOG4661|consen 691 ERIHREREELRR 702 (940)
T ss_pred hhhhhhHHHHhh
Confidence 444444455443
No 81
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=6.1 Score=41.36 Aligned_cols=43 Identities=37% Similarity=0.485 Sum_probs=28.0
Q ss_pred HhhhhhhccCCCCCh-hhh--HHHHHHHHHH--HHHHHHHHHHHHHHH
Q 008721 443 AQQRTLLDHGDKADP-VKL--QQEKERLEQR--QREEKARIEAQIKAA 485 (556)
Q Consensus 443 A~ek~ll~~g~k~dp-~~~--~~e~~~~e~~--~~ee~ar~~a~~~a~ 485 (556)
||-+.|.+-.-+.|| .|+ +|||+.+++| +||+-||+.|.+.+.
T Consensus 216 aRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~k 263 (379)
T COG5269 216 ARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALK 263 (379)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHHh
Confidence 455555565677888 555 5667777766 467778877765543
No 82
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=76.20 E-value=13 Score=44.04 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.8
Q ss_pred CCCCHHHH
Q 008721 162 LYSVSDEF 169 (556)
Q Consensus 162 ~Y~S~~EF 169 (556)
.|.++++.
T Consensus 251 AyrSiEDI 258 (988)
T KOG2072|consen 251 AYRSIEDI 258 (988)
T ss_pred HHHHHHHH
Confidence 35555443
No 83
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=76.14 E-value=2.3 Score=38.06 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+.++||..+|.++. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~ 58 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDT 58 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhc
Confidence 45678999998865 469999999999999999998863
No 84
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.89 E-value=2.5 Score=37.84 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 239 CPKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 239 ~~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+.++||..+|++.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~ 59 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLEN 59 (107)
T ss_pred CCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcC
Confidence 355789999998764 579999999999999999988863
No 85
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.71 E-value=15 Score=39.58 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Q 008721 463 EKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKVKPLMCIAFQHID 527 (556)
Q Consensus 463 e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~~~~tv~i~~~n~~ 527 (556)
--|++-++-+||.+++|++..+.....+.++++....-||+-++.|+++-..-|-.+-|+ +...
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~-eq~~ 194 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFV-EQHS 194 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cchh
Confidence 367888999999999999999999999999999999999999999999988888888888 5443
No 86
>PLN02316 synthase/transferase
Probab=75.38 E-value=6.5 Score=47.98 Aligned_cols=63 Identities=35% Similarity=0.390 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008721 458 VKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKVKPLMCIA 522 (556)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~~~~tv~i~ 522 (556)
++|.+|.++.+ |+.||+.|. ++.|||++|-+.++.+|-+++|++-++-.+.++-.+.-.+.++
T Consensus 259 ~~la~e~ae~~-~~~ee~~r~-~~~kaa~~a~~a~akae~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1036)
T PLN02316 259 EKLAKEEAERE-RQAEEQRRR-EEEKAAMEADRAQAKAEVEKRREKLQNLLKKASRSADNVWYIE 321 (1036)
T ss_pred HHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhcccceEEec
Confidence 45555555544 445554444 4456777766666655555555555555555444433333443
No 87
>PLN03086 PRLI-interacting factor K; Provisional
Probab=75.28 E-value=5.3 Score=45.69 Aligned_cols=49 Identities=29% Similarity=0.492 Sum_probs=29.5
Q ss_pred HHhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 442 KAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKA 493 (556)
Q Consensus 442 KA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~ 493 (556)
.||||-.-.|.+.++..|+++|+|+ +-|+|+|+.-.++.|+...||..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 55 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLERER---KAKEEAAKQREAIEAAQRSRRLDA 55 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567665556666777777776654 455666655555555555555544
No 88
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=74.66 E-value=11 Score=38.64 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=40.6
Q ss_pred HHhhhhhHHHHHHhhhhhhccCC-----CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 008721 431 MLKSRFADTILKAQQRTLLDHGD-----KADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKA---EIELKKQRE 502 (556)
Q Consensus 431 ~lk~rfadtIlKA~ek~ll~~g~-----k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~---~~~~~~~~~ 502 (556)
+||+.|+-+..+.|...-+.+-+ +.+-+.++.+.++.-..-++++++|-+++++.-++-+.+. ..+++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555544433333322 2223555666666666666777777666665444333332 233444444
Q ss_pred HHHHHHHHH
Q 008721 503 KEREAARVA 511 (556)
Q Consensus 503 ~~~e~~r~~ 511 (556)
.-+++||+.
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 444444443
No 89
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=73.47 E-value=2.6 Score=37.28 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+.++||..+|.++ .-|+|+.+|+.|||+.+++.+|..
T Consensus 18 ~~s~~F~~PV~~~-~~pdY~~iIk~PmDL~tI~~kl~~ 54 (99)
T cd05508 18 PGAEPFLKPVDLE-QFPDYAQYVFKPMDLSTLEKNVRK 54 (99)
T ss_pred cCcchhcCCCChh-hCCCHHHHcCCCCCHHHHHHHHhc
Confidence 4578888888874 578999999999999999998863
No 90
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=72.66 E-value=18 Score=38.34 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=5.4
Q ss_pred hhhHHHHH
Q 008721 435 RFADTILK 442 (556)
Q Consensus 435 rfadtIlK 442 (556)
.|+|.+-+
T Consensus 242 ~l~D~~~~ 249 (321)
T PF07946_consen 242 YLIDKLAR 249 (321)
T ss_pred HHHHHhhe
Confidence 47777763
No 91
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=72.45 E-value=14 Score=41.65 Aligned_cols=9 Identities=33% Similarity=0.268 Sum_probs=4.5
Q ss_pred hhhhhHHHH
Q 008721 433 KSRFADTIL 441 (556)
Q Consensus 433 k~rfadtIl 441 (556)
|.|=|+-=.
T Consensus 204 KEreaeea~ 212 (489)
T PF05262_consen 204 KEREAEEAA 212 (489)
T ss_pred HHHHhHHHH
Confidence 555554444
No 92
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=71.22 E-value=6.9 Score=35.86 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+.++||..+|.+. .-|+|+.+|+.|||+.+|+.+|..
T Consensus 21 ~~s~~F~~PVd~~-~~pdY~~iIk~PmDL~tIk~kL~~ 57 (119)
T cd05496 21 EDSEPFRQPVDLL-KYPDYRDIIDTPMDLGTVKETLFG 57 (119)
T ss_pred CccccccCCCChh-hcCcHHHHhCCcccHHHHHHHHhC
Confidence 3468899998876 478999999999999999998873
No 93
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=71.17 E-value=15 Score=35.41 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=46.4
Q ss_pred HHHHHHhhhhhhccCCCCChhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 008721 438 DTILKAQQRTLLDHGDKADPVKLQQEKERLE--QRQREEKARIEAQIKAAEAASRMKAEIELKKQREKER--EAARVALQ 513 (556)
Q Consensus 438 dtIlKA~ek~ll~~g~k~dp~~~~~e~~~~e--~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~--e~~r~~~~ 513 (556)
..|+..|+..+.+ +-..-++++.|-++++ -+++=.+||.+|+.-++|++.+-+++.+++++....+ .-=-+..+
T Consensus 36 ~~iLe~R~~~I~~--~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 36 EEIFNNRQTNIQD--NITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778877533 3233344444444333 3333367778887777777666666666555544222 12234456
Q ss_pred hhcccccccccc
Q 008721 514 KVKPLMCIAFQH 525 (556)
Q Consensus 514 ~~~~tv~i~~~n 525 (556)
.|.+.+| ||.+
T Consensus 114 ~~~~~~~-~~~~ 124 (155)
T PRK06569 114 DINLAAK-QFRT 124 (155)
T ss_pred HHHHHHH-HHHH
Confidence 6666666 5433
No 94
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=70.95 E-value=16 Score=38.82 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHHhhhhhHHHHHHhh
Q 008721 420 QMSPKKALRAAMLKSRFADTILKAQQ 445 (556)
Q Consensus 420 ~~sp~K~~Raa~lk~rfadtIlKA~e 445 (556)
.++|+-.-+|.=+|..+...|+|+.+
T Consensus 251 ~l~~e~~~K~~k~R~~~~~~~~K~~~ 276 (321)
T PF07946_consen 251 KLSPEAKKKAKKNREEEEEKILKEAH 276 (321)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555555555555555444
No 95
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.79 E-value=24 Score=41.97 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=10.4
Q ss_pred CHHHHHHHHhcCCCCCHHHH
Q 008721 150 DLGTVKTRLDRNLYSVSDEF 169 (556)
Q Consensus 150 DL~TIkkKL~~~~Y~S~~EF 169 (556)
|+..+-.++..|.+-++.+|
T Consensus 70 Di~~~l~r~~~g~~l~~~eL 89 (782)
T PRK00409 70 DIDDALKRAEKGGVLSGDEL 89 (782)
T ss_pred cHHHHHHHHhCCCCCCHHHH
Confidence 44555555555555555544
No 96
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.56 E-value=4.8 Score=36.46 Aligned_cols=39 Identities=3% Similarity=0.008 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCC----CccchhhhhhhhcccchhHHHhhhcc
Q 008721 239 CPKTPPLHSTLSS----KKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 239 ~~k~~p~~~~v~~----K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.|...|++.+|.+ +.-.|+|+.+|+.|||+++++.+|..
T Consensus 16 lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~ 58 (109)
T cd05492 16 LPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINS 58 (109)
T ss_pred CcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHc
Confidence 4557888888853 33468999999999999999988863
No 97
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.40 E-value=4.5 Score=35.88 Aligned_cols=38 Identities=0% Similarity=-0.093 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 239 CPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 239 ~~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+.++||..+|.+ ...|+|+.+|+.|||+.+++.+|..
T Consensus 18 ~~~a~~F~~pV~~-~~~p~Y~~iIk~PmDL~tI~~kl~~ 55 (104)
T cd05507 18 HRYASVFLKPVTE-DIAPGYHSVVYRPMDLSTIKKNIEN 55 (104)
T ss_pred CCCCHhhcCCCCc-cccCCHHHHhCCCcCHHHHHHHHhc
Confidence 3456788888876 4578999999999999999988863
No 98
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=65.75 E-value=35 Score=33.46 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=27.3
Q ss_pred cCCCChHHHHHHHHHhhhhhHHHHHHhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 418 DVQMSPKKALRAAMLKSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIK 483 (556)
Q Consensus 418 ~~~~sp~K~~Raa~lk~rfadtIlKA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~ 483 (556)
..-.+|+-|-|.--=|.|-| |+ |.++- ++.++++++.+++.+++.++..++.+
T Consensus 16 aGTtdaEEAtkiLAEkRRlA------Re-----QkErE--E~ER~ekEE~er~~ree~~~k~~Ee~ 68 (171)
T PF05672_consen 16 AGTTDAEEATKILAEKRRLA------RE-----QKERE--EQERLEKEEQERRKREELARKLAEER 68 (171)
T ss_pred CCCCCHHHHHHHHHHHHHHH------HH-----HhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777766655565543 32 12322 44445555556655555555544443
No 99
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=65.41 E-value=5.2 Score=35.21 Aligned_cols=36 Identities=6% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+.++||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 16 ~~s~~F~~pv~~~-~~pdY~~iIk~PmDL~tI~~kl~ 51 (97)
T cd05505 16 RFSWPFREPVTAD-EAEDYKKVITNPMDLQTMQTKCS 51 (97)
T ss_pred CCcccccCCCChh-hcccHHHHcCCcCCHHHHHHHHc
Confidence 3467888888754 57999999999999999988886
No 100
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=63.25 E-value=28 Score=34.64 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 008721 499 KQREKEREAARVAL 512 (556)
Q Consensus 499 ~~~~~~~e~~r~~~ 512 (556)
+++++|+|+-|+++
T Consensus 106 Kq~q~EEEKRrqki 119 (190)
T PF06936_consen 106 KQKQEEEEKRRQKI 119 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 101
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=62.75 E-value=33 Score=29.83 Aligned_cols=45 Identities=36% Similarity=0.416 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008721 467 LEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQK 514 (556)
Q Consensus 467 ~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~ 514 (556)
..||-++|+-.--|+.+|.|-..|.++-. -+-|+|-|.-|.||+.
T Consensus 39 ekrrLkeEkKkAKAeqrA~EfEqRakehq---ErDEkElEERrKALe~ 83 (86)
T PF15437_consen 39 EKRRLKEEKKKAKAEQRAREFEQRAKEHQ---ERDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhc
Confidence 34455566655566666665544443322 2334455566777754
No 102
>COG3756 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.72 E-value=12 Score=35.73 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred CcCCCChHH-HHH--HHHHhhhhh--HHHHHHhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 417 LDVQMSPKK-ALR--AAMLKSRFA--DTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRM 491 (556)
Q Consensus 417 ~~~~~sp~K-~~R--aa~lk~rfa--dtIlKA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~ 491 (556)
.+.|++++| +|| ||+-+.|.+ |.||- + -+..+|+-+---|+.. |+ +.+.|-.|+..+++...=.+.|.
T Consensus 36 t~~pip~d~~~~a~~a~~s~krw~av~~~L~--~-Ff~l~~~~w~~KR~~e---ei-aa~~e~~a~~s~a~~~~~~~~rt 108 (153)
T COG3756 36 TEKPIPADKAALARAAALSKKRWRAVDAILD--E-FFSLQGDGWHNKRCDE---EI-AAQVEKEAKASGAAGKSVQALRT 108 (153)
T ss_pred cCCCCCccHHHHHHHHHHhHHHHHHhHHHHH--H-HHhhccchHHHHHHHH---HH-HHHHHhHHHHhhhhccccccccc
Confidence 488999999 444 445555554 45553 3 2344454333333322 22 55666666655444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Q 008721 492 KAEIELKKQREKEREAARVALQKVKPLMCIAFQHID 527 (556)
Q Consensus 492 ~~~~~~~~~~~~~~e~~r~~~~~~~~tv~i~~~n~~ 527 (556)
.+...++-+-. ..|..-+++++++|+|-.
T Consensus 109 r~h~~~~t~~~-------~slt~~qk~~~fs~~~~~ 137 (153)
T COG3756 109 RAHGAAQTGAL-------PSLTQSQKPSDFSPENAQ 137 (153)
T ss_pred hHHHHHhhccc-------cccccccCCcCcCccchh
Confidence 44333332222 267888999999987744
No 103
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=62.35 E-value=41 Score=36.89 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhccccccc
Q 008721 503 KEREAARVALQKVKPLMCIA 522 (556)
Q Consensus 503 ~~~e~~r~~~~~~~~tv~i~ 522 (556)
+|=|..++++++++--|+|+
T Consensus 363 keLeekkreleql~~q~~v~ 382 (442)
T PF06637_consen 363 KELEEKKRELEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44556677788888888888
No 104
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=62.19 E-value=28 Score=39.38 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=6.0
Q ss_pred cchhHHhhhhh
Q 008721 525 HIDLVGECCHL 535 (556)
Q Consensus 525 n~~~~~dle~l 535 (556)
.+.+|+||..|
T Consensus 455 qlklmed~dv~ 465 (708)
T KOG3654|consen 455 QLKLMEDLDVL 465 (708)
T ss_pred HHHHHHhhccc
Confidence 35566666544
No 105
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=61.94 E-value=7.1 Score=35.45 Aligned_cols=38 Identities=3% Similarity=-0.037 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCC-ccchhhhhhhhcccchhHHHhhhc
Q 008721 239 CPKTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 239 ~~k~~p~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.+..+||..+|.+. ...|+|+.+|+.+||+.++...|.
T Consensus 18 ~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~ 56 (114)
T cd05494 18 NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIV 56 (114)
T ss_pred CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHH
Confidence 34568888888873 467999999999999999988876
No 106
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=60.93 E-value=22 Score=40.13 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008721 488 ASRMKAEIELKKQREKEREAARVALQKVK 516 (556)
Q Consensus 488 a~~~~~~~~~~~~~~~~~e~~r~~~~~~~ 516 (556)
.|..+++|-++|.--+++=..|..|+-|+
T Consensus 432 er~~keee~arrefirqey~rrkqlklme 460 (708)
T KOG3654|consen 432 ERAPKEEEVARREFIRQEYERRKQLKLME 460 (708)
T ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555533333334455555555
No 107
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=60.40 E-value=46 Score=36.58 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.8
Q ss_pred CcCCCCh
Q 008721 417 LDVQMSP 423 (556)
Q Consensus 417 ~~~~~sp 423 (556)
..+-|.|
T Consensus 51 ~AVmvD~ 57 (387)
T PRK09510 51 DAVMVDP 57 (387)
T ss_pred cceecCh
Confidence 3344444
No 108
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=60.33 E-value=28 Score=39.87 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 008721 167 DEFVADVRLTFSNAMLY 183 (556)
Q Consensus 167 ~EF~~DvrLIf~NA~~Y 183 (556)
.+...|+.--+.|-.-|
T Consensus 110 ~dgqed~e~sleNlqd~ 126 (940)
T KOG4661|consen 110 EDGQEDQEDSLENLQDY 126 (940)
T ss_pred ccchhhHHHhHhhhccc
Confidence 33334444444444333
No 109
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=59.44 E-value=6.3 Score=47.23 Aligned_cols=45 Identities=42% Similarity=0.536 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 008721 469 QRQREEKARIEAQIKAAEAASRMKA-EIELKKQREKEREAARVALQ 513 (556)
Q Consensus 469 ~~~~ee~ar~~a~~~a~e~a~~~~~-~~~~~~~~~~~~e~~r~~~~ 513 (556)
+-.-+|||+.+|+++|+|+-+|.++ +.+..++||.|||++|.+-+
T Consensus 816 ~~~~~~kak~aa~~ra~er~~~~r~re~e~~~e~e~~~~aersak~ 861 (1229)
T KOG2133|consen 816 RSNVEEKAKRAAEQRARERSERERERETELEREREVEREAERSAKE 861 (1229)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchHHhhhhh
Confidence 3445789999999999998887765 55677888888888888776
No 110
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=57.56 E-value=1.5 Score=50.30 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 008721 124 GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (556)
Q Consensus 124 s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~ 200 (556)
...|+.-++.. .+|.||.+++-||.+....+++..+.|.....|..|+.++|.|+..||....-++..+..|.+.
T Consensus 213 Ier~w~~~dg~--k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGE--KWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccc--cccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 34556644544 6899999999999999999999999999999999999999999999999998888888877654
No 111
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=1e+02 Score=34.67 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 008721 423 PKKALRAA 430 (556)
Q Consensus 423 p~K~~Raa 430 (556)
-.|.|-|+
T Consensus 115 k~~~~eA~ 122 (630)
T KOG0742|consen 115 KTKEYEAA 122 (630)
T ss_pred HHHHHHHH
Confidence 34445443
No 112
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=56.71 E-value=1.1e+02 Score=28.78 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=4.7
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
++..|+...
T Consensus 50 ~l~~R~~~I 58 (156)
T CHL00118 50 VLDERKEYI 58 (156)
T ss_pred HHHHHHHHH
Confidence 355565554
No 113
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=55.83 E-value=84 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=12.0
Q ss_pred HHHHhhhhhhccCCCCChhhhHHHHHHHH
Q 008721 440 ILKAQQRTLLDHGDKADPVKLQQEKERLE 468 (556)
Q Consensus 440 IlKA~ek~ll~~g~k~dp~~~~~e~~~~e 468 (556)
+|..|+... + ++--+-++++.|-+.+.
T Consensus 32 ~LeeR~~~I-~-~~Ld~Ae~~r~eA~~l~ 58 (154)
T PRK06568 32 SLDAKILEV-Q-EKVLKAEKLKEDAALLF 58 (154)
T ss_pred HHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Confidence 455666554 2 22223344444444443
No 114
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=54.38 E-value=67 Score=31.90 Aligned_cols=19 Identities=0% Similarity=-0.321 Sum_probs=13.5
Q ss_pred ccccccchhHHhhhhhcCC
Q 008721 520 CIAFQHIDLVGECCHLCYL 538 (556)
Q Consensus 520 ~i~~~n~~~~~dle~l~~~ 538 (556)
.-||+-..|++.|+.|...
T Consensus 223 ~~~p~~~~~~~~l~~~~~~ 241 (242)
T cd03405 223 GKDPEFYAFYRSLEAYRNS 241 (242)
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 3466678888888887643
No 115
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=53.97 E-value=12 Score=33.91 Aligned_cols=36 Identities=0% Similarity=-0.053 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+..+||..+|.+. ..|+|+.+|+.|||+.+++.+|.
T Consensus 19 ~~~~~F~~pv~~~-~~pdY~~vI~~PmdL~tI~~kl~ 54 (112)
T cd05528 19 KRFNAFTKPVDEE-EVPDYYEIIKQPMDLQTILQKLD 54 (112)
T ss_pred CCchhhcCCCCcc-ccCcHHHHHcCCCCHHHHHHHHc
Confidence 3457787777765 47899999999999999988886
No 116
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=53.95 E-value=10 Score=34.36 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.++||..+|.++ ..|+|+.+|+.|||+.+++.+|.
T Consensus 25 ~s~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~ 59 (112)
T cd05510 25 HSTPFLTKVSKR-EAPDYYDIIKKPMDLGTMLKKLK 59 (112)
T ss_pred cccchhcCCChh-hcCCHHHHhcCccCHHHHHHHHh
Confidence 457788887765 57899999999999999998885
No 117
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=53.62 E-value=73 Score=30.90 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 008721 458 VKLQQEKERLEQRQRE 473 (556)
Q Consensus 458 ~~~~~e~~~~e~~~~e 473 (556)
||-++..++.+++.+|
T Consensus 69 Ek~r~k~~E~err~~E 84 (157)
T PF15236_consen 69 EKRRQKQEEEERRRRE 84 (157)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 118
>PLN02316 synthase/transferase
Probab=53.55 E-value=38 Score=41.66 Aligned_cols=10 Identities=50% Similarity=0.444 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008721 504 EREAARVALQ 513 (556)
Q Consensus 504 ~~e~~r~~~~ 513 (556)
|.|+-|..|+
T Consensus 295 e~~~~~~~~~ 304 (1036)
T PLN02316 295 EVEKRREKLQ 304 (1036)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 119
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=53.33 E-value=81 Score=29.45 Aligned_cols=9 Identities=0% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
++..|+...
T Consensus 35 ~l~~R~~~I 43 (141)
T PRK08476 35 FMDNRNASI 43 (141)
T ss_pred HHHHHHHHH
Confidence 444455443
No 120
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=53.24 E-value=13 Score=32.77 Aligned_cols=35 Identities=0% Similarity=-0.174 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
...+|..+|.+ ...|+|+.+|+.|||+.+++.+|.
T Consensus 18 ~~~~F~~PV~~-~~~pdY~~vIk~PmDL~tI~~kl~ 52 (98)
T cd05513 18 PHGFFAFPVTD-FIAPGYSSIIKHPMDFSTMKEKIK 52 (98)
T ss_pred ccccccCcCCc-cccccHHHHHcCccCHHHHHHHHh
Confidence 34567777664 457899999999999999988886
No 121
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.51 E-value=49 Score=36.63 Aligned_cols=13 Identities=38% Similarity=0.268 Sum_probs=5.8
Q ss_pred CCChhhhHHHHHH
Q 008721 454 KADPVKLQQEKER 466 (556)
Q Consensus 454 k~dp~~~~~e~~~ 466 (556)
+++-++.||..++
T Consensus 365 k~kt~~~RQ~~~e 377 (440)
T KOG2357|consen 365 KAKTDKNRQRVEE 377 (440)
T ss_pred HhhhhhhHHHHHH
Confidence 3444444544443
No 122
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=52.46 E-value=70 Score=32.85 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=4.7
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
++..|++..
T Consensus 33 ~l~eR~~~I 41 (250)
T PRK14474 33 VMKKRQQRI 41 (250)
T ss_pred HHHHHHHHH
Confidence 445555554
No 123
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.16 E-value=2e+02 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008721 497 LKKQREKEREAARVALQ 513 (556)
Q Consensus 497 ~~~~~~~~~e~~r~~~~ 513 (556)
+++.-+.|+++|..++.
T Consensus 105 A~~~Ie~Ek~~Al~elr 121 (154)
T PRK06568 105 AIQLIQNQKSTASKELQ 121 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555444
No 124
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=51.80 E-value=30 Score=37.22 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=5.1
Q ss_pred ChhhhHHHHHHHH
Q 008721 456 DPVKLQQEKERLE 468 (556)
Q Consensus 456 dp~~~~~e~~~~e 468 (556)
|--++++|+++.+
T Consensus 90 ~~~~~~rer~E~e 102 (361)
T KOG3634|consen 90 DFDRIEREREEKE 102 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 125
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.44 E-value=1.6e+02 Score=28.17 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhhc
Q 008721 438 DTILKAQQRTLLD 450 (556)
Q Consensus 438 dtIlKA~ek~ll~ 450 (556)
-.+|..|++.+.+
T Consensus 45 ~~~l~~R~~~I~~ 57 (174)
T PRK07352 45 GKILEERREAILQ 57 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677777533
No 126
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=51.03 E-value=1.1e+02 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhccCCCCChhhhHHHHHHHHHHHHH--HHHHHHHHHH
Q 008721 438 DTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQRE--EKARIEAQIK 483 (556)
Q Consensus 438 dtIlKA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~e--e~ar~~a~~~ 483 (556)
-.||..|+..+.+ +-.+-++++.|-+++...-++ ..||.+|+..
T Consensus 79 ~~vLe~R~~~I~~--~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 79 GGIIETRRDRIAQ--DLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655433 334445555554444333332 4455554443
No 127
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.82 E-value=1.6e+02 Score=29.45 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=6.3
Q ss_pred HHHHHHhhhhh
Q 008721 438 DTILKAQQRTL 448 (556)
Q Consensus 438 dtIlKA~ek~l 448 (556)
-.+|..|+...
T Consensus 74 ~~~L~~R~~~I 84 (205)
T PRK06231 74 QRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHH
Confidence 34556666664
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.57 E-value=72 Score=38.83 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=9.1
Q ss_pred ccCCC-CChhhhHHHH
Q 008721 450 DHGDK-ADPVKLQQEK 464 (556)
Q Consensus 450 ~~g~k-~dp~~~~~e~ 464 (556)
..+++ .+++.+.++-
T Consensus 797 ~~~d~r~~~~~~~~~a 812 (1018)
T KOG2002|consen 797 KNGDKRISKTVIAQEA 812 (1018)
T ss_pred hcCCCCCCHHHHHHHH
Confidence 34666 6777766653
No 129
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=50.34 E-value=13 Score=33.09 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+.++||..+|.+ .-|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~s~~F~~pv~~--~~p~Y~~iI~~PmdL~tI~~kL~~ 55 (109)
T cd05502 20 ELSLPFHEPVSP--SVPNYYKIIKTPMDLSLIRKKLQP 55 (109)
T ss_pred CCChhhcCCCCC--CCCCHHHHCCCCccHHHHHHHHhc
Confidence 346677777775 688999999999999999999884
No 130
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=49.03 E-value=44 Score=37.58 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 008721 495 IELKKQREKEREAARV 510 (556)
Q Consensus 495 ~~~~~~~~~~~e~~r~ 510 (556)
+..|++++.|+|.+|+
T Consensus 349 e~er~~~~ee~e~~R~ 364 (460)
T KOG1363|consen 349 EKERKEEEEERETARQ 364 (460)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 3344444556777775
No 131
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=48.95 E-value=14 Score=32.31 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+...||..+|.++ ..|+|+.+|+.|+|+.+|+.+|.
T Consensus 16 ~~~~~F~~pv~~~-~~p~Y~~iIk~PmdL~tI~~kl~ 51 (97)
T cd05503 16 EDAWPFLEPVNTK-LVPGYRKIIKKPMDFSTIREKLE 51 (97)
T ss_pred CCchhhcCCCCcc-ccCCHHHHhCCCCCHHHHHHHHc
Confidence 4566788777765 45899999999999999988885
No 132
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=48.71 E-value=1.8e+02 Score=29.61 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=6.5
Q ss_pred ccccccccccchhHHh
Q 008721 516 KPLMCIAFQHIDLVGE 531 (556)
Q Consensus 516 ~~tv~i~~~n~~~~~d 531 (556)
.+.++-+ .+..++.+
T Consensus 138 ~~~~d~~-~~~~lid~ 152 (246)
T TIGR03321 138 TDLADTD-LEERMVDV 152 (246)
T ss_pred HHhcChH-HHHHHHHH
Confidence 3344444 44444443
No 133
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.34 E-value=1.2e+02 Score=31.83 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=12.5
Q ss_pred HHHHHHhhhhhHHHHHHhhh
Q 008721 427 LRAAMLKSRFADTILKAQQR 446 (556)
Q Consensus 427 ~Raa~lk~rfadtIlKA~ek 446 (556)
++..-||.+|=. |+.|++.
T Consensus 166 vkV~WLR~~L~E-i~Ea~e~ 184 (269)
T PF05278_consen 166 VKVDWLRSKLEE-ILEAKEI 184 (269)
T ss_pred cchHHHHHHHHH-HHHHHHH
Confidence 345678888766 6677663
No 134
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.26 E-value=1.4e+02 Score=28.94 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=8.8
Q ss_pred hhhHHHHHHhhhhh
Q 008721 435 RFADTILKAQQRTL 448 (556)
Q Consensus 435 rfadtIlKA~ek~l 448 (556)
++--.+|..|+...
T Consensus 47 kPI~~~l~~R~~~I 60 (184)
T CHL00019 47 GVLSDLLDNRKQTI 60 (184)
T ss_pred hHHHHHHHHHHHHH
Confidence 44556667777665
No 135
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.09 E-value=99 Score=30.11 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=6.3
Q ss_pred HHHHHHhhhhh
Q 008721 438 DTILKAQQRTL 448 (556)
Q Consensus 438 dtIlKA~ek~l 448 (556)
-.|+..|+..+
T Consensus 57 ~~~l~~R~~~I 67 (181)
T PRK13454 57 GAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHH
Confidence 34556666664
No 136
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=47.95 E-value=1.2e+02 Score=32.02 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008721 465 ERLEQRQREEKARIEAQIKAA 485 (556)
Q Consensus 465 ~~~e~~~~ee~ar~~a~~~a~ 485 (556)
+++-+.|.|--+|.|+-+++-
T Consensus 132 ~e~lk~QEes~~rqE~~Rr~T 152 (276)
T PF12037_consen 132 EELLKMQEESVIRQEQMRRAT 152 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 137
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.15 E-value=17 Score=31.97 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 239 CPKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 239 ~~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+..+||..+|.+.. .-|+|+.+++.|+|+.+|+.+|..
T Consensus 19 ~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~ 58 (103)
T cd05500 19 LKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKS 58 (103)
T ss_pred CCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhc
Confidence 355688999988754 579999999999999999988863
No 138
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=69 Score=34.69 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=10.0
Q ss_pred HHHhhcccccccccc
Q 008721 511 ALQKVKPLMCIAFQH 525 (556)
Q Consensus 511 ~~~~~~~tv~i~~~n 525 (556)
||++|+.+++++.++
T Consensus 279 al~~~~n~~~~~~D~ 293 (365)
T KOG2391|consen 279 ALEKAENLEALDIDE 293 (365)
T ss_pred HHhhhccCcCCCchh
Confidence 777777776666444
No 139
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=46.90 E-value=1.6e+02 Score=27.45 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 008721 498 KKQREKEREAARV 510 (556)
Q Consensus 498 ~~~~~~~~e~~r~ 510 (556)
+..-+.+.++|+.
T Consensus 98 ~~~~~~~~~~a~~ 110 (141)
T PRK08476 98 KAELESKYEAFAK 110 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 140
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=46.23 E-value=6.7 Score=38.89 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008721 494 EIELKKQREKEREAARVALQKVKPLMCIA 522 (556)
Q Consensus 494 ~~~~~~~~~~~~e~~r~~~~~~~~tv~i~ 522 (556)
++++++.++.++.++-.+.++|..++.++
T Consensus 57 eeee~~~~eE~e~rE~eEy~k~K~~f~ve 85 (188)
T PF09756_consen 57 EEEERKAKEEKERREQEEYEKWKSAFSVE 85 (188)
T ss_dssp -----------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 33444455544445556778888887775
No 141
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.65 E-value=16 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+...||..+|.++. -|+|+.+++.|+|+.+++.+|.
T Consensus 16 ~~s~~F~~pv~~~~-~p~Y~~~I~~PmdL~tI~~kl~ 51 (112)
T cd05511 16 PDSWPFHTPVNKKK-VPDYYKIIKRPMDLQTIRKKIS 51 (112)
T ss_pred CCchhhcCCCChhh-cccHHHHhcCCCCHHHHHHHHh
Confidence 45568888887664 6899999999999999988876
No 142
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=44.54 E-value=2.2e+02 Score=27.36 Aligned_cols=9 Identities=11% Similarity=0.619 Sum_probs=4.3
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 46 ~l~~R~~~I 54 (173)
T PRK13453 46 VMDKRERDI 54 (173)
T ss_pred HHHHHHHHH
Confidence 444455554
No 143
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=44.17 E-value=87 Score=34.88 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=6.7
Q ss_pred hhHHhhhhhcC
Q 008721 527 DLVGECCHLCY 537 (556)
Q Consensus 527 ~~~~dle~l~~ 537 (556)
+|+++|..|..
T Consensus 149 ~~i~~l~~~~~ 159 (445)
T PRK13428 149 RFLDELDAMAP 159 (445)
T ss_pred HHHHHhhccCC
Confidence 56666666554
No 144
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=43.46 E-value=11 Score=44.79 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 008721 129 RPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLY--------------S----------VSDE------FVADVRLTFS 178 (556)
Q Consensus 129 ~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y--------------~----------S~~E------F~~DvrLIf~ 178 (556)
.|+|.. ..|-|..+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 88 ~~~d~~--~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKP--IPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCC--CCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 455533 678899999999999999999998777 2 2333 5667888999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHH
Q 008721 179 NAMLYNPPENNVHKMAQELNNL 200 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~ 200 (556)
||+.+|.|++ +++.++.+.++
T Consensus 166 at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHH
Confidence 9999999999 55555444443
No 145
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=43.31 E-value=20 Score=31.60 Aligned_cols=35 Identities=0% Similarity=-0.118 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..++|..+|.++ ..|+|+.+|+.|||+.+++.+|.
T Consensus 18 ~~~~F~~pVd~~-~~pdY~~iIk~PmDL~tI~~kl~ 52 (98)
T cd05512 18 TAEIFSEPVDLS-EVPDYLDHIKQPMDFSTMRKKLE 52 (98)
T ss_pred CchhhcCCCCcc-ccCCHHHHhcCCcCHHHHHHHHh
Confidence 345666666654 47899999999999999988886
No 146
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=43.10 E-value=1.5e+02 Score=27.83 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.6
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 30 ~l~~R~~~I 38 (159)
T PRK09173 30 SLDARADRI 38 (159)
T ss_pred HHHHHHHHH
Confidence 345555554
No 147
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=42.66 E-value=25 Score=30.50 Aligned_cols=36 Identities=3% Similarity=-0.173 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
...+|..+|.+.. ..|+|+.+++.|+|+++|+.+|.
T Consensus 17 ~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~ 53 (99)
T cd05506 17 WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLE 53 (99)
T ss_pred CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHh
Confidence 4577877776643 46999999999999999988886
No 148
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.45 E-value=1.3e+02 Score=36.04 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=9.1
Q ss_pred CHHHHHHHHhcCCCCCHHH
Q 008721 150 DLGTVKTRLDRNLYSVSDE 168 (556)
Q Consensus 150 DL~TIkkKL~~~~Y~S~~E 168 (556)
|+..+-.++..|.+-++.+
T Consensus 67 di~~~l~r~~~g~~l~~~e 85 (771)
T TIGR01069 67 DIRELLKRAELGGIVKGLE 85 (771)
T ss_pred cHHHHHHHHhcCCcCChHH
Confidence 4444444555555444444
No 149
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=41.99 E-value=1.3e+02 Score=30.20 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.4
Q ss_pred HHHHHhhccc
Q 008721 509 RVALQKVKPL 518 (556)
Q Consensus 509 r~~~~~~~~t 518 (556)
|+++..+++.
T Consensus 78 R~~~l~aKqe 87 (207)
T PRK01005 78 KRSLESLKQA 87 (207)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 150
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=41.71 E-value=2.7e+02 Score=26.30 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.5
Q ss_pred HHHhhhhh
Q 008721 441 LKAQQRTL 448 (556)
Q Consensus 441 lKA~ek~l 448 (556)
|..|+...
T Consensus 37 l~~R~~~I 44 (164)
T PRK14471 37 VKEREDSI 44 (164)
T ss_pred HHHHHHHH
Confidence 34444443
No 151
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=41.60 E-value=53 Score=38.43 Aligned_cols=15 Identities=47% Similarity=0.521 Sum_probs=8.7
Q ss_pred CChhhhHHHHHHHHH
Q 008721 455 ADPVKLQQEKERLEQ 469 (556)
Q Consensus 455 ~dp~~~~~e~~~~e~ 469 (556)
.||+-|.+|+|+.+.
T Consensus 548 ~~~~~~~~~~~~~~~ 562 (651)
T PTZ00399 548 DDKEELQREKEEKEA 562 (651)
T ss_pred CCHHHHHHHHHHHHH
Confidence 466666666665433
No 152
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.51 E-value=76 Score=37.49 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 008721 499 KQREKERE 506 (556)
Q Consensus 499 ~~~~~~~e 506 (556)
|++++|.|
T Consensus 546 r~~~lE~E 553 (697)
T PF09726_consen 546 RRRQLESE 553 (697)
T ss_pred HHHHHHHH
Confidence 33444444
No 153
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=41.43 E-value=1.3e+02 Score=32.58 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.8
Q ss_pred hccccc
Q 008721 550 LNTTWR 555 (556)
Q Consensus 550 ~~~~~~ 555 (556)
+...|+
T Consensus 272 Iq~~~~ 277 (346)
T TIGR02794 272 IQQNLY 277 (346)
T ss_pred HHhcCC
Confidence 344554
No 154
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=41.37 E-value=1.1e+02 Score=32.16 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=5.4
Q ss_pred HHHHHHhhhhhH
Q 008721 427 LRAAMLKSRFAD 438 (556)
Q Consensus 427 ~Raa~lk~rfad 438 (556)
|..-|-|.|+.|
T Consensus 111 Y~D~LaRkR~~~ 122 (276)
T PF12037_consen 111 YEDELARKRYQD 122 (276)
T ss_pred HHHHHHHHHHHH
Confidence 333444455544
No 155
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=40.99 E-value=91 Score=34.80 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.3
Q ss_pred hhHHHH
Q 008721 459 KLQQEK 464 (556)
Q Consensus 459 ~~~~e~ 464 (556)
.|++|.
T Consensus 324 ~~~~~~ 329 (429)
T PRK00247 324 ELHAEN 329 (429)
T ss_pred HHHHHH
Confidence 344433
No 156
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.94 E-value=1.6e+02 Score=33.91 Aligned_cols=103 Identities=26% Similarity=0.344 Sum_probs=55.3
Q ss_pred HHHHhhhhhHHHHH--------HhhhhhhccCCCCC---hhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 008721 429 AAMLKSRFADTILK--------AQQRTLLDHGDKAD---PVKLQQEKERLEQRQRE---EKARIEAQIKAAEAASRMKAE 494 (556)
Q Consensus 429 aa~lk~rfadtIlK--------A~ek~ll~~g~k~d---p~~~~~e~~~~e~~~~e---e~ar~~a~~~a~e~a~~~~~~ 494 (556)
+|=|+.+-||.-+. +|+|+-|.|.-..+ -++|.+|.++++..-+| |..+|+.+....-++.|-+-.
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqls 413 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLS 413 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66677777877543 55666556644444 35777777666655444 555666666544344332211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHhhhhh
Q 008721 495 IELKKQREKEREAARVALQKVKPLMCIAFQHIDLVGECCHL 535 (556)
Q Consensus 495 ~~~~~~~~~~~e~~r~~~~~~~~tv~i~~~n~~~~~dle~l 535 (556)
+ ..|++.+-.+..++.+|||.==.. +|=+++.+.+.|
T Consensus 414 E---~~rel~Elks~lrv~qkEKEql~~-EkQeL~~yi~~L 450 (546)
T PF07888_consen 414 E---NRRELQELKSSLRVAQKEKEQLQE-EKQELLEYIERL 450 (546)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 233344445555556666654444 554555444433
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=40.69 E-value=1.4e+02 Score=30.68 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 466 RLEQRQREEKARIEAQIKAAEAASRM 491 (556)
Q Consensus 466 ~~e~~~~ee~ar~~a~~~a~e~a~~~ 491 (556)
+..++.++|+.+|++.+..++++.++
T Consensus 40 ek~k~aeeea~~Le~k~~eaee~~~r 65 (246)
T PF00769_consen 40 EKLKQAEEEAEELEQKRQEAEEEKQR 65 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666555555443
No 158
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=40.69 E-value=27 Score=32.20 Aligned_cols=40 Identities=0% Similarity=-0.171 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 238 NCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 238 ~~~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
..+..++|..+|.+....|+|+.+|+.|+|+.+|+.+|..
T Consensus 41 ~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 41 QLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred cCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 3455678888887663578999999999999999888863
No 159
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=40.67 E-value=2.9e+02 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHhhhhh
Q 008721 433 KSRFADTILKAQQRTL 448 (556)
Q Consensus 433 k~rfadtIlKA~ek~l 448 (556)
..|-++-.+|++++.|
T Consensus 38 ~~R~~~~~~K~~ekEl 53 (108)
T PF03879_consen 38 EKRLELKAIKEKEKEL 53 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677788888886
No 160
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.98 E-value=1e+02 Score=33.87 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=6.0
Q ss_pred hHHHHHHhhhh
Q 008721 437 ADTILKAQQRT 447 (556)
Q Consensus 437 adtIlKA~ek~ 447 (556)
||++-.|||.+
T Consensus 292 ~~I~~VarENs 302 (442)
T PF06637_consen 292 AGIERVARENS 302 (442)
T ss_pred hhHHHHHHhhh
Confidence 45555566644
No 161
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.72 E-value=2e+02 Score=27.50 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=41.6
Q ss_pred CcCCCChHHHHHHHHHhhhhhHHHHHHhhhhh--------hccCCCCChhhhHHHHHHHHHHH
Q 008721 417 LDVQMSPKKALRAAMLKSRFADTILKAQQRTL--------LDHGDKADPVKLQQEKERLEQRQ 471 (556)
Q Consensus 417 ~~~~~sp~K~~Raa~lk~rfadtIlKA~ek~l--------l~~g~k~dp~~~~~e~~~~e~~~ 471 (556)
.-.+|+||+.--+=-|...|.+.....|++.. |-.+++.|++|++.-..|+...+
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLR 102 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45689999987777899999999988887542 23488899998877666655444
No 162
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=39.38 E-value=72 Score=36.18 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=5.9
Q ss_pred HHHHHHhhccccccc
Q 008721 508 ARVALQKVKPLMCIA 522 (556)
Q Consensus 508 ~r~~~~~~~~tv~i~ 522 (556)
.+..++...+-.+|.
T Consensus 320 e~K~~Eaq~er~~iA 334 (489)
T PF05262_consen 320 EKKEEEAQQERKEIA 334 (489)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333344333333443
No 163
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=39.01 E-value=1e+02 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 160 RNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 160 ~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
...|.|..-|...|..|-..-..++..+..+..+|..|...|.+.|.++..-
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~ 54 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLL 54 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3468888888888888887777777778899999999999999999876543
No 164
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=38.94 E-value=3.2e+02 Score=25.83 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.1
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 36 ~l~~R~~~I 44 (164)
T PRK14473 36 LLNERTRRI 44 (164)
T ss_pred HHHHHHHHH
Confidence 344455443
No 165
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=38.25 E-value=3.2e+02 Score=26.19 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.7
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 44 ~l~~R~~~I 52 (173)
T PRK13460 44 ALDERASGV 52 (173)
T ss_pred HHHHHHHHH
Confidence 445555554
No 166
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=38.08 E-value=24 Score=30.81 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
...||..+|.+.. .|+|+.+++.|||+.+|+.+|.
T Consensus 18 ~a~~F~~pv~~~~-~p~Y~~~I~~PmdL~tI~~kl~ 52 (101)
T cd05509 18 SAWPFLEPVDKEE-APDYYDVIKKPMDLSTMEEKLE 52 (101)
T ss_pred CchhhcCCCChhh-cCCHHHHhcCCCCHHHHHHHHh
Confidence 4567777777654 7899999999999999988886
No 167
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=37.85 E-value=2.6e+02 Score=30.68 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=61.5
Q ss_pred cCCCChHHHHHHHHHhhhhhHH-----HHHHhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 418 DVQMSPKKALRAAMLKSRFADT-----ILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMK 492 (556)
Q Consensus 418 ~~~~sp~K~~Raa~lk~rfadt-----IlKA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~ 492 (556)
.+.+++|.-..||+=+.|.+.. |+-||.++. | +|.+-|..--+|...++.-|++|-+|=....-.-.+-.
T Consensus 3 k~~~~~D~ke~a~ie~RR~~E~eR~~Rifn~r~R~i---G--vD~~aL~~Qv~Ekk~~e~~E~~r~~a~~~~~~~~d~~~ 77 (379)
T PF05914_consen 3 KVDLPPDLKEAAAIERRRQREEERQKRIFNARNRTI---G--VDVEALDRQVEEKKQREAAEKEREEAYDAEMLQNDKVA 77 (379)
T ss_pred cccCCccHHHHHHHHHHHHhHHHHHHhccChHHhhh---C--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999999875 777888775 2 67777776666666666666655443322222111211
Q ss_pred ---HHHHHHHHHHHHH--HHHHHHHH--hhccccccccccchhHHhhh
Q 008721 493 ---AEIELKKQREKER--EAARVALQ--KVKPLMCIAFQHIDLVGECC 533 (556)
Q Consensus 493 ---~~~~~~~~~~~~~--e~~r~~~~--~~~~tv~i~~~n~~~~~dle 533 (556)
+.++.+.+|.+.+ ..=|..-| ++.+-+|+| +..-+-||+=
T Consensus 78 ~~le~e~~~~~r~l~k~l~~fr~~~Q~~e~rRE~DL~-DP~~lkk~~P 124 (379)
T PF05914_consen 78 CMLEKEQAEDRRRLNKELNEFRQQFQQPETRREFDLN-DPDALKKDLP 124 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChhhccccccc-ChHhHhhcCC
Confidence 2222222222222 23333333 344557777 6666556543
No 168
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=37.77 E-value=25 Score=31.88 Aligned_cols=34 Identities=6% Similarity=-0.041 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.+||..++.+ ...|+|+.+|+.|||+.+|+.+|.
T Consensus 30 s~~F~~pvd~-~~~pdY~~vI~~PmDL~tI~~kL~ 63 (115)
T cd05504 30 SWPFLRPVSK-IEVPDYYDIIKKPMDLGTIKEKLN 63 (115)
T ss_pred chhhcCCCCc-cccccHHHHhcCcccHHHHHHHHc
Confidence 4567666664 346899999999999999988886
No 169
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=37.71 E-value=2.7e+02 Score=26.53 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=12.3
Q ss_pred HHHHHHhhhhhhccCCCCChhhhHHHHH
Q 008721 438 DTILKAQQRTLLDHGDKADPVKLQQEKE 465 (556)
Q Consensus 438 dtIlKA~ek~ll~~g~k~dp~~~~~e~~ 465 (556)
--+|..|++...+ +-.+-++.+.|-+
T Consensus 36 ~~~le~R~~~I~~--~l~~Ae~~k~eAe 61 (167)
T PRK14475 36 AGALDAYAAKIQA--ELDEAQRLREEAQ 61 (167)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4456666666533 3333344444433
No 170
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=37.55 E-value=3.3e+02 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhccCCCCChhhhHHHHH
Q 008721 439 TILKAQQRTLLDHGDKADPVKLQQEKE 465 (556)
Q Consensus 439 tIlKA~ek~ll~~g~k~dp~~~~~e~~ 465 (556)
.+|..|+....+ +-.+-++++.|-+
T Consensus 54 ~~L~~R~~~I~~--~l~~Ae~~~~eA~ 78 (184)
T PRK13455 54 GMLDKRAEGIRS--ELEEARALREEAQ 78 (184)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 466777776532 3333444444433
No 171
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=36.85 E-value=1.9e+02 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 008721 458 VKLQQEKERLEQRQREEKARI 478 (556)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~ 478 (556)
++.++|.++-|.|-..|++++
T Consensus 79 err~~EE~~EE~Rl~rere~~ 99 (157)
T PF15236_consen 79 ERRRREEEEEEERLAREREEL 99 (157)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333344333
No 172
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=36.73 E-value=3.6e+02 Score=25.29 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=4.0
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 33 ~l~~R~~~I 41 (159)
T PRK13461 33 VIDSRQSEI 41 (159)
T ss_pred HHHHHHHHH
Confidence 344455443
No 173
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=36.23 E-value=4e+02 Score=25.58 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.4
Q ss_pred HHHhhhhh
Q 008721 441 LKAQQRTL 448 (556)
Q Consensus 441 lKA~ek~l 448 (556)
+..|+...
T Consensus 51 l~~R~~~I 58 (167)
T PRK08475 51 YKSRINKI 58 (167)
T ss_pred HHHHHHHH
Confidence 34444443
No 174
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.31 E-value=3.8e+02 Score=25.69 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=4.9
Q ss_pred HHHHHhhhhh
Q 008721 439 TILKAQQRTL 448 (556)
Q Consensus 439 tIlKA~ek~l 448 (556)
.+|..|+...
T Consensus 45 ~~l~~R~~~I 54 (175)
T PRK14472 45 SALEEREKGI 54 (175)
T ss_pred HHHHHHHHHH
Confidence 3444555554
No 175
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=34.66 E-value=56 Score=27.14 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
.-|+..+..|.|.|..+++.|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999877654
No 176
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.78 E-value=3.1e+02 Score=26.68 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 008721 499 KQREKEREAARVALQK 514 (556)
Q Consensus 499 ~~~~~~~e~~r~~~~~ 514 (556)
.+-+.+++.++..|..
T Consensus 134 ~~I~~~k~~a~~~l~~ 149 (181)
T PRK13454 134 KRIAEIRAGALESVEE 149 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 177
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=33.66 E-value=3.7e+02 Score=24.47 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.5
Q ss_pred HHHhhhhh
Q 008721 441 LKAQQRTL 448 (556)
Q Consensus 441 lKA~ek~l 448 (556)
|..|+...
T Consensus 34 l~~R~~~I 41 (140)
T PRK07353 34 VEEREDYI 41 (140)
T ss_pred HHHHHHHH
Confidence 34444443
No 178
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=33.31 E-value=3.2e+02 Score=27.21 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=9.1
Q ss_pred hhhhcCCCchhhHHHHH
Q 008721 532 CCHLCYLSSPFRWKELL 548 (556)
Q Consensus 532 le~l~~~~~~~~~~~~~ 548 (556)
.|.|..+...-+|..|+
T Consensus 91 ~e~L~~i~~~~~~~~l~ 107 (194)
T COG1390 91 EEKLRNIASDPEYESLQ 107 (194)
T ss_pred HHHHHcCcCCcchHHHH
Confidence 35566666555555533
No 179
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=33.08 E-value=43 Score=29.20 Aligned_cols=38 Identities=3% Similarity=0.001 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+-..||..+|.+.. .-|+|+.+|..|+|+.+|+.+|..
T Consensus 19 ~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~ 57 (102)
T cd05498 19 AYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDN 57 (102)
T ss_pred cccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHcc
Confidence 44678888887653 468999999999999999888863
No 180
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.73 E-value=1.1e+02 Score=31.80 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 457 PVKLQQEKERLEQRQREEKARIEAQIKAAEAASR 490 (556)
Q Consensus 457 p~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~ 490 (556)
-+.++++.+.++..+++..+.++.+.+.-++..+
T Consensus 213 ~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~ 246 (297)
T PF02841_consen 213 AEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIK 246 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666666555554433
No 181
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.37 E-value=38 Score=29.69 Aligned_cols=38 Identities=3% Similarity=-0.089 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCC-ccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+-.+||..+|.+. ..-|+|+.+|+.|+|+.+|+.+|..
T Consensus 19 ~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~ 57 (102)
T cd05499 19 AYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQN 57 (102)
T ss_pred cccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcC
Confidence 3467888887764 3568999999999999999888863
No 182
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=32.33 E-value=2.5e+02 Score=26.03 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=5.5
Q ss_pred HHHHHhhhhh
Q 008721 439 TILKAQQRTL 448 (556)
Q Consensus 439 tIlKA~ek~l 448 (556)
.+|..|+..+
T Consensus 31 ~~l~~R~~~I 40 (156)
T PRK05759 31 KALEERQKKI 40 (156)
T ss_pred HHHHHHHHHH
Confidence 3455566554
No 183
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=32.02 E-value=2.9e+02 Score=26.46 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhcc
Q 008721 505 REAARVALQKVKP 517 (556)
Q Consensus 505 ~e~~r~~~~~~~~ 517 (556)
.+....+.+..++
T Consensus 136 ~~i~~lA~~~a~k 148 (175)
T PRK14472 136 NEVADLAVKGAEK 148 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 184
>PF12848 ABC_tran_2: ABC transporter
Probab=31.99 E-value=2.9e+02 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 461 QQEKERLEQRQREEKARIEAQIKAAEAA 488 (556)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~~~a~e~a 488 (556)
...+++....+..+....+.+++..++.
T Consensus 19 ~~~k~~~~~~~~~~~~~~~k~~~~l~~~ 46 (85)
T PF12848_consen 19 LEQKEERRERQERQYEKQQKEIKRLEEF 46 (85)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 185
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.99 E-value=1.8e+02 Score=33.13 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 008721 509 RVALQKV 515 (556)
Q Consensus 509 r~~~~~~ 515 (556)
.+.|..+
T Consensus 343 ~~~l~~~ 349 (582)
T PF09731_consen 343 EEHLKNE 349 (582)
T ss_pred HHHHHHH
Confidence 3333333
No 186
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=31.90 E-value=2e+02 Score=27.82 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 460 LQQEKERLEQRQREEK-ARIEAQIKAAEA-------ASRMKAEIELKKQREKEREAARVA 511 (556)
Q Consensus 460 ~~~e~~~~e~~~~ee~-ar~~a~~~a~e~-------a~~~~~~~~~~~~~~~~~e~~r~~ 511 (556)
-|+|+|++|++.-.|+ -+|....+--++ |--++..+|+-++||.|+.+++.+
T Consensus 108 SRRereeiEKQrA~eRYmklh~aGKTeqAkaDLaRlalir~qReeaa~kre~ekkaa~~~ 167 (174)
T KOG3375|consen 108 SRREREEIEKQRAKERYMKLHLAGKTEQAKADLARLALIRQQREEAAAKREAEKKAADVA 167 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5788888886543322 334433332211 111223555555666666666543
No 187
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=31.81 E-value=1.1e+02 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=15.6
Q ss_pred CCCCChhhhHHHHHHHHHHHHH
Q 008721 452 GDKADPVKLQQEKERLEQRQRE 473 (556)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~e 473 (556)
++..|++++++.+++.+.+..+
T Consensus 84 ~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 84 ADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred cccCCHHHHHHHHHHHHHHHhh
Confidence 5667888888777777765543
No 188
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=31.71 E-value=55 Score=39.73 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=0.0
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 460 LQQEKERL-EQRQREEKARIEAQIKAAEAASRMKAEIELKKQ 500 (556)
Q Consensus 460 ~~~e~~~~-e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~ 500 (556)
||-|.|+. ..|||||+.|+|.|++|. .+.++||||
T Consensus 137 ~rteeeqqaAarEREe~er~e~ek~~i------l~~R~ARRK 172 (927)
T PF15402_consen 137 LRTEEEQQAAAREREERERAEREKEAI------LERREARRK 172 (927)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh
No 189
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=31.20 E-value=4.5e+02 Score=24.73 Aligned_cols=12 Identities=17% Similarity=-0.044 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 008721 499 KQREKEREAARV 510 (556)
Q Consensus 499 ~~~~~~~e~~r~ 510 (556)
...++..+.++.
T Consensus 114 ~ea~~~~~~a~~ 125 (156)
T CHL00118 114 KYIDSLLNEATK 125 (156)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 190
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=30.86 E-value=2.4e+02 Score=26.98 Aligned_cols=10 Identities=10% Similarity=0.302 Sum_probs=4.7
Q ss_pred hhHHHHHHhh
Q 008721 436 FADTILKAQQ 445 (556)
Q Consensus 436 fadtIlKA~e 445 (556)
.++.|..|.+
T Consensus 55 I~~~l~~A~~ 64 (174)
T PRK07352 55 ILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHH
Confidence 4444544444
No 191
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.66 E-value=3.6e+02 Score=24.05 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008721 497 LKKQREKEREAARVALQKV 515 (556)
Q Consensus 497 ~~~~~~~~~e~~r~~~~~~ 515 (556)
.+.+++.|-+..+..|..|
T Consensus 75 ~~~~k~~ei~~l~~~l~~l 93 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEEL 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433
No 192
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=30.57 E-value=2.5e+02 Score=30.24 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=9.6
Q ss_pred CCCChHHHHHHHHHhh
Q 008721 419 VQMSPKKALRAAMLKS 434 (556)
Q Consensus 419 ~~~sp~K~~Raa~lk~ 434 (556)
+.+.|-..++.||-+.
T Consensus 211 ~~i~~P~~v~~ai~~~ 226 (334)
T PRK11029 211 KQINLPTEVSDAIYNR 226 (334)
T ss_pred EecCCCHHHHHHHHHH
Confidence 3555556677777643
No 193
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=30.31 E-value=1.6e+02 Score=27.37 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=19.1
Q ss_pred ccchhHHhhhhhcCCCchhhHHHHHhhc
Q 008721 524 QHIDLVGECCHLCYLSSPFRWKELLRLN 551 (556)
Q Consensus 524 ~n~~~~~dle~l~~~~~~~~~~~~~~~~ 551 (556)
.|..-|..| |+|...|.=||.-..+|
T Consensus 91 ~~~~~l~~f--i~Tkt~P~iyy~P~k~~ 116 (131)
T PF04696_consen 91 EHYLALANF--IRTKTEPHIYYLPWKHT 116 (131)
T ss_pred HHHHHHHhh--cccCCCCceeeccccCC
Confidence 466778888 89999998887654443
No 194
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=30.24 E-value=1.4e+02 Score=33.29 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=7.7
Q ss_pred ccccccc--cCCCCCcc
Q 008721 18 GSQRIEA--VPGSQPCE 32 (556)
Q Consensus 18 ~~~~~~~--i~g~~~c~ 32 (556)
.|+.|++ |..--+|+
T Consensus 19 TSn~IE~Hp~d~~hscd 35 (672)
T KOG4722|consen 19 TSNNIELHPIDEEHSCD 35 (672)
T ss_pred CcccccccccccccccC
Confidence 3556665 44444555
No 195
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=30.04 E-value=4.4e+02 Score=24.20 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=4.2
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
+|..|+...
T Consensus 23 ~l~~R~~~I 31 (147)
T TIGR01144 23 AIETRQKKI 31 (147)
T ss_pred HHHHHHHHH
Confidence 344455443
No 196
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=29.69 E-value=2.4e+02 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008721 461 QQEKERLEQRQREEKARIEAQ 481 (556)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~ 481 (556)
++++.+.+++.++-++++...
T Consensus 5 ~~~~~~~~~~r~~~~~~~~~~ 25 (151)
T PF11875_consen 5 RRKKREIEEQREKNKEEIAEK 25 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 197
>PF08524 rRNA_processing: rRNA processing; InterPro: IPR013730 This is a family of proteins that is are involved in rRNA processing []. In a localisation study they were found to localise to the nucleus and nucleolus []. The family also includes other metazoa members from plants to mammals where the protein has been named BR22 and is associated with TTF-1, thyroid transcription factor 1 []. In the lungs, the family binds TTF-1 to form a complex which influences the expression of the key lung surfactant protein-B (SP-B) and -C (SP-C), the small hydrophobic surfactant proteins that maintain surface tension in alveoli [].
Probab=29.56 E-value=2.9e+02 Score=26.36 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 008721 500 QREKEREAARVAL 512 (556)
Q Consensus 500 ~~~~~~e~~r~~~ 512 (556)
+...+|+.....|
T Consensus 108 ~~~k~R~~~~k~l 120 (148)
T PF08524_consen 108 KKKKERKERKKKL 120 (148)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555444433
No 198
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=29.31 E-value=2.2e+02 Score=30.62 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhHHHHHHhhhhhhcc
Q 008721 427 LRAAMLKSRFADTILKAQQRTLLDH 451 (556)
Q Consensus 427 ~Raa~lk~rfadtIlKA~ek~ll~~ 451 (556)
|+++.++. -+++-+++|.|+..
T Consensus 8 ~q~a~~~l---k~~~~~~qk~l~~~ 29 (332)
T TIGR01541 8 QQIADRKL---KKLNTADEKSLQSR 29 (332)
T ss_pred HHHHHHHH---hhhhHHHHHHHHHH
Confidence 55666663 46666777776443
No 199
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=29.31 E-value=67 Score=35.51 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 008721 457 PVKLQQEKERLEQRQREEKARIEAQ 481 (556)
Q Consensus 457 p~~~~~e~~~~e~~~~ee~ar~~a~ 481 (556)
...|+++..+.|+.++|+|-|-.||
T Consensus 301 ra~~~r~ma~kek~~kE~kL~elAQ 325 (506)
T KOG2441|consen 301 RAQLERKMAEKEKEEKEQKLRELAQ 325 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665554444
No 200
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=29.14 E-value=3.9e+02 Score=26.64 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 008721 438 DTILKAQQ 445 (556)
Q Consensus 438 dtIlKA~e 445 (556)
+.|-.|.+
T Consensus 86 ~~L~~Ae~ 93 (205)
T PRK06231 86 AEINQANE 93 (205)
T ss_pred HHHHHHHH
Confidence 33444433
No 201
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=29.10 E-value=3.7e+02 Score=23.54 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred CChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008721 455 ADPVKLQQEKERLEQRQREEK-ARIEAQIKAAEAA 488 (556)
Q Consensus 455 ~dp~~~~~e~~~~e~~~~ee~-ar~~a~~~a~e~a 488 (556)
..|+==++|+|++|.++..++ -.|.++.+-.|+-
T Consensus 21 ~~~~lSRRERE~iekq~A~erY~klh~~GKT~eak 55 (82)
T PF10252_consen 21 APPELSRREREEIEKQRARERYMKLHAEGKTDEAK 55 (82)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 445666888888888765544 3456666655543
No 202
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.99 E-value=50 Score=29.65 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=21.1
Q ss_pred cchhhhhhhhcccchhHHHhhhc
Q 008721 254 SKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 254 ~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..|+|+.+|+.|||+.+++.+|.
T Consensus 29 ~~pdY~~iIk~PMDL~tI~~kL~ 51 (102)
T cd05501 29 YIRDYCQGIKEPMWLNKVKERLN 51 (102)
T ss_pred CCCchHHHcCCCCCHHHHHHHHc
Confidence 56899999999999999999886
No 203
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=28.84 E-value=4.1e+02 Score=26.00 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=16.1
Q ss_pred CCCChHH---------HHHHHH--HhhhhhHHHHHHhh
Q 008721 419 VQMSPKK---------ALRAAM--LKSRFADTILKAQQ 445 (556)
Q Consensus 419 ~~~sp~K---------~~Raa~--lk~rfadtIlKA~e 445 (556)
.+++|+- .||..| ||.-|-+-+++-+.
T Consensus 19 p~~~~~E~~el~~~~~~Yr~~m~alR~~f~ee~~~~~~ 56 (170)
T PF14943_consen 19 PPVDPEEVKELKRRYNNYRTQMRALRSEFREEVLRKKY 56 (170)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677763 355554 66667666666554
No 204
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.09 E-value=1.3e+02 Score=30.25 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHH
Q 008721 458 VKLQQEKERLEQR 470 (556)
Q Consensus 458 ~~~~~e~~~~e~~ 470 (556)
||-|||||+||.|
T Consensus 129 ~~~~~~~~~~~~~ 141 (197)
T PRK12585 129 EKARQEREELEER 141 (197)
T ss_pred HHHHHhHHHHHHH
Confidence 5556666666544
No 205
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=27.74 E-value=4.6e+02 Score=25.09 Aligned_cols=13 Identities=0% Similarity=0.110 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhcc
Q 008721 505 REAARVALQKVKP 517 (556)
Q Consensus 505 ~e~~r~~~~~~~~ 517 (556)
.+....+.+..++
T Consensus 134 ~ei~~lA~~~a~k 146 (173)
T PRK13460 134 NQIVEMTITIASK 146 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444444
No 206
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=27.51 E-value=50 Score=25.22 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhcc
Q 008721 503 KEREAARVALQKVKP 517 (556)
Q Consensus 503 ~~~e~~r~~~~~~~~ 517 (556)
+.||++|+|+.++++
T Consensus 24 lRre~erqA~~QLek 38 (42)
T PF12052_consen 24 LRREAERQALAQLEK 38 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666654
No 207
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=3.1e+02 Score=29.19 Aligned_cols=71 Identities=25% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHhhhhhhccCCCCChhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 441 LKAQQRTLLDHGDKADPVKLQQEKERLEQ---RQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVAL 512 (556)
Q Consensus 441 lKA~ek~ll~~g~k~dp~~~~~e~~~~e~---~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~ 512 (556)
+|-|+|.. ..--|+.|+-=-+++..+.. .+.+-||.++|++.|--.|-++.+-|.++...+.+..+-+-++
T Consensus 235 fkEqeK~~-k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~ 308 (379)
T COG5269 235 FKEQEKEM-KKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAA 308 (379)
T ss_pred HHHHHHHH-HHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 45677763 55566666543333333322 2223355555555555555555555555555444444444443
No 208
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=26.86 E-value=29 Score=30.10 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=8.6
Q ss_pred HHHHHHhhhhhH
Q 008721 427 LRAAMLKSRFAD 438 (556)
Q Consensus 427 ~Raa~lk~rfad 438 (556)
.--||||.|||+
T Consensus 91 eytamlrerfag 102 (106)
T PF11516_consen 91 EYTAMLRERFAG 102 (106)
T ss_dssp HHHHHHTTGGGG
T ss_pred HHHHHHHHHhcc
Confidence 346788888884
No 209
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=26.73 E-value=1.9e+02 Score=24.48 Aligned_cols=6 Identities=33% Similarity=0.318 Sum_probs=2.2
Q ss_pred HHHHHh
Q 008721 509 RVALQK 514 (556)
Q Consensus 509 r~~~~~ 514 (556)
|.+.++
T Consensus 48 rk~rEK 53 (70)
T PF13025_consen 48 RKEREK 53 (70)
T ss_pred HHHHHh
Confidence 333333
No 210
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.54 E-value=2.9e+02 Score=31.71 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=11.0
Q ss_pred cCCCChHHHHHHHHH
Q 008721 418 DVQMSPKKALRAAML 432 (556)
Q Consensus 418 ~~~~sp~K~~Raa~l 432 (556)
.--+|-.|-.|-+++
T Consensus 466 py~ls~nkdVk~~F~ 480 (591)
T KOG2505|consen 466 PYSLSANKDVKSIFI 480 (591)
T ss_pred cccccccHHHHHHHH
Confidence 445667888888887
No 211
>PRK00106 hypothetical protein; Provisional
Probab=26.51 E-value=3.6e+02 Score=31.07 Aligned_cols=10 Identities=30% Similarity=0.208 Sum_probs=5.4
Q ss_pred hhhhhcCCCc
Q 008721 531 ECCHLCYLSS 540 (556)
Q Consensus 531 dle~l~~~~~ 540 (556)
.||.+++.+.
T Consensus 158 ~Le~~a~lt~ 167 (535)
T PRK00106 158 ELERVAALSQ 167 (535)
T ss_pred HHHHHhCCCH
Confidence 4555555543
No 212
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=25.92 E-value=1.3e+02 Score=26.97 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
++||... .++..-|+||.+|+.|+|+.+|+.+|.
T Consensus 26 s~~F~~l-p~k~~~pdYy~~I~~P~dL~tI~~kl~ 59 (106)
T cd05525 26 AIPFINL-PSKKKNPDYYERITDPVDLSTIEKQIL 59 (106)
T ss_pred cHhhccC-CCcccCCchhhhCCCCcCHHHHHHHHc
Confidence 3455443 335667999999999999999998886
No 213
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=25.49 E-value=1.7e+02 Score=32.53 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHhhhhhhccCCCCChhhhHHHHHHHHHHHHH--HHHHHH
Q 008721 442 KAQQRTLLDHGDKADPVKLQQEKERLEQRQRE--EKARIE 479 (556)
Q Consensus 442 KA~ek~ll~~g~k~dp~~~~~e~~~~e~~~~e--e~ar~~ 479 (556)
||||... -.-+....-+++|+++.|.+-+| .|||-+
T Consensus 293 KAReeV~--~ra~~~r~ma~kek~~kE~kL~elAQkAR~~ 330 (506)
T KOG2441|consen 293 KAREEVR--MRAQLERKMAEKEKEEKEQKLRELAQKAREE 330 (506)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666432 12223334456666666666555 444443
No 214
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.31 E-value=43 Score=42.49 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcccccccchH
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAKPAQNLSSK 285 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk~~e~l~~~ 285 (556)
..|||+-+|+++-+ |+||.+|+.|||+.++..++++..=..+.+
T Consensus 1318 ~awPFlepVn~~~v-p~Y~~IIk~Pmdl~tir~k~~~~~Y~~~ee 1361 (1404)
T KOG1245|consen 1318 AAWPFLEPVNPKEV-PDYYDIIKKPMDLSTIREKLSKGIYPSPEE 1361 (1404)
T ss_pred hcchhhccCChhhc-ccHHHHhcChhHHHHHHHHHhcccCCCHHH
Confidence 36999999997654 599999999999999999988766554433
No 215
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.17 E-value=3.4e+02 Score=27.35 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=19.5
Q ss_pred HhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 443 AQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAA 488 (556)
Q Consensus 443 A~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~a 488 (556)
|+++.|-.+ --.|++|+..++ .|+|.+.|++.+-..-
T Consensus 45 ~~Q~~L~~e-----~~~l~~eqQ~l~----~er~~l~~er~~~~~~ 81 (228)
T PRK06800 45 AQQKSLHKE-----LNQLRQEQQKLE----RERQQLLADREQFQEH 81 (228)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 466665222 234566665555 4666666665554433
No 216
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=25.00 E-value=5.6e+02 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 008721 501 REKEREAARVALQKVKPLM 519 (556)
Q Consensus 501 ~~~~~e~~r~~~~~~~~tv 519 (556)
.+...+.+..+++.-++.+
T Consensus 124 ~el~~e~~~lAv~~A~kil 142 (167)
T PRK14475 124 ADVKAAAVDLAAQAAETVL 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544
No 217
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.62 E-value=2.7e+02 Score=28.18 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=0.0
Q ss_pred HhhhhhhccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 008721 443 AQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAA---EAASRMKAEIELKKQREK 503 (556)
Q Consensus 443 A~ek~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~---e~a~~~~~~~~~~~~~~~ 503 (556)
|-...|+..+.+.+.++-..-+++|....+|-+++|..+..+. +.|.+++++.|-...-|+
T Consensus 107 aE~~el~a~N~a~N~~~~~~R~~Rla~~~~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~ier 170 (227)
T KOG4691|consen 107 AEHRELMAWNQAENRRLHELRIARLAQEEREQEQRIAEEQARKAEEVQAWKQQAEREVLQLIER 170 (227)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.59 E-value=3.8e+02 Score=28.77 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.9
Q ss_pred cCCCChHHHHHHHHHh
Q 008721 418 DVQMSPKKALRAAMLK 433 (556)
Q Consensus 418 ~~~~sp~K~~Raa~lk 433 (556)
|..|--+..+|--+|+
T Consensus 65 D~~vekEV~iRkrv~~ 80 (309)
T TIGR00570 65 DPTVEKEVDIRKRVLK 80 (309)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4444445555555443
No 219
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.50 E-value=2.1e+02 Score=31.94 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=5.2
Q ss_pred HhhhhhHHHHH
Q 008721 432 LKSRFADTILK 442 (556)
Q Consensus 432 lk~rfadtIlK 442 (556)
+|.|+++.++|
T Consensus 371 ~RQ~~~e~~~K 381 (440)
T KOG2357|consen 371 NRQRVEEEFLK 381 (440)
T ss_pred hHHHHHHHHHH
Confidence 44444444444
No 220
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=24.33 E-value=5.3e+02 Score=26.19 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=4.2
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
++..|++..
T Consensus 33 ~l~~R~~~I 41 (246)
T TIGR03321 33 AMDAREKKI 41 (246)
T ss_pred HHHHHHHHH
Confidence 444455443
No 221
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=23.91 E-value=62 Score=28.74 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+-+.||...+. +..-|+|+.+|+.|+|+.+|+.+|..
T Consensus 22 ~~s~pF~~~p~-~~~~PdYy~iI~~PmdL~tI~~kl~~ 58 (103)
T cd05520 22 LLAEPFLKLPS-KRKYPDYYQEIKNPISLQQIRTKLKN 58 (103)
T ss_pred CccHhhhcCCC-cccCCCHHHHcCCCcCHHHHHHHHcc
Confidence 44556666544 45678999999999999999888863
No 222
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.89 E-value=5.7e+02 Score=30.72 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=4.8
Q ss_pred HHHHHHhhh
Q 008721 438 DTILKAQQR 446 (556)
Q Consensus 438 dtIlKA~ek 446 (556)
+.|-.|++.
T Consensus 497 ~ii~~A~~~ 505 (771)
T TIGR01069 497 FIIEQAKTF 505 (771)
T ss_pred HHHHHHHHH
Confidence 455556653
No 223
>PRK12705 hypothetical protein; Provisional
Probab=23.89 E-value=9.6e+02 Score=27.54 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=6.2
Q ss_pred HHhhhhhcCCCc
Q 008721 529 VGECCHLCYLSS 540 (556)
Q Consensus 529 ~~dle~l~~~~~ 540 (556)
...||.+++.+.
T Consensus 129 ~~~Le~ia~lt~ 140 (508)
T PRK12705 129 DNELYRVAGLTP 140 (508)
T ss_pred HHHHHHHhCCCH
Confidence 445555555543
No 224
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=23.87 E-value=44 Score=29.80 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
++||...+. +...|+||.+|+.|+|+.+|+.+|.
T Consensus 25 s~~F~~~p~-~~~~pdYy~iI~~Pmdl~tI~~kl~ 58 (107)
T cd05516 25 AEVFIQLPS-RKELPEYYELIRKPVDFKKIKERIR 58 (107)
T ss_pred eHHhhcCCC-cccCCCHHHHcCCCCCHHHHHHHHc
Confidence 445554433 3457999999999999999988885
No 225
>smart00297 BROMO bromo domain.
Probab=23.83 E-value=1.3e+02 Score=25.76 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..+|..++.+.. .|+|+.++..|+|+.+|+..|.
T Consensus 25 ~~~F~~~~~~~~-~p~Y~~~i~~P~dl~~I~~kl~ 58 (107)
T smart00297 25 SWPFLKPVDRKE-APDYYDIIKKPMDLSTIKKKLE 58 (107)
T ss_pred chhhccCCChhh-ccCHHHHhcCCCCHHHHHHHHh
Confidence 445555554333 6899999999999999988875
No 226
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=22.94 E-value=55 Score=29.04 Aligned_cols=36 Identities=6% Similarity=-0.122 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+-..+|..++. +..-|+|+.+|+.|+|+.+|+.+|.
T Consensus 22 ~~a~~F~~~p~-~~~~pdYy~iIk~PmdL~tI~~kl~ 57 (105)
T cd05515 22 RLSLIFMRLPS-KSEYPDYYDVIKKPIDMEKIRSKIE 57 (105)
T ss_pred cccHHhccCCC-cccCCcHHHHcCCCcCHHHHHHHHc
Confidence 34456665543 3456899999999999999988886
No 227
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=22.79 E-value=3.1e+02 Score=30.57 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=7.4
Q ss_pred HHHHHHHhhc
Q 008721 507 AARVALQKVK 516 (556)
Q Consensus 507 ~~r~~~~~~~ 516 (556)
+.|.=|+.||
T Consensus 323 r~RlYletme 332 (419)
T PRK10930 323 RERLYIETME 332 (419)
T ss_pred HHHHHHHHHH
Confidence 4577778887
No 228
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=22.27 E-value=7.4e+02 Score=25.43 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=9.0
Q ss_pred cchhHHhhh-hhcCCCchhhH
Q 008721 525 HIDLVGECC-HLCYLSSPFRW 544 (556)
Q Consensus 525 n~~~~~dle-~l~~~~~~~~~ 544 (556)
+..|+.+|- .|...+-..|.
T Consensus 146 ~~~lid~~i~~l~~l~~~~r~ 166 (250)
T PRK14474 146 EQQIVGIFIARLEHLSEAERQ 166 (250)
T ss_pred HHHHHHHHHHHhcccCHHHHH
Confidence 344444443 45555444443
No 229
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=22.27 E-value=1.1e+02 Score=26.18 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
.-|...+.+|.|.|..|++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999998655543
No 230
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=22.19 E-value=4.6e+02 Score=23.02 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008721 472 REEKARIEAQIKAAEAASRM 491 (556)
Q Consensus 472 ~ee~ar~~a~~~a~e~a~~~ 491 (556)
+||+-||-.+.+.|.+..|.
T Consensus 37 kEekrrLkeEkKkAKAeqrA 56 (86)
T PF15437_consen 37 KEEKRRLKEEKKKAKAEQRA 56 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666554443
No 231
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=22.19 E-value=69 Score=28.89 Aligned_cols=26 Identities=0% Similarity=-0.040 Sum_probs=22.5
Q ss_pred CccchhhhhhhhcccchhHHHhhhcc
Q 008721 252 KKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 252 K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+...|+||.+|+.|+|+.+|+.+|..
T Consensus 35 ~~~~PdYy~iI~~Pmdl~tI~~kl~~ 60 (113)
T cd05524 35 RRNEPEYYEVVSNPIDLLKIQQKLKT 60 (113)
T ss_pred cccCCCHHHHhCCccCHHHHHHHhCc
Confidence 45568999999999999999988864
No 232
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=3.1e+02 Score=29.12 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=5.1
Q ss_pred CCCChHHH
Q 008721 419 VQMSPKKA 426 (556)
Q Consensus 419 ~~~sp~K~ 426 (556)
+.|++++.
T Consensus 82 k~ls~eE~ 89 (290)
T KOG2689|consen 82 KLLSEEEK 89 (290)
T ss_pred cccChHHH
Confidence 46777664
No 233
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.69 E-value=2.3e+02 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 475 KARIEAQIKAAEAASRMKAEIELKK 499 (556)
Q Consensus 475 ~ar~~a~~~a~e~a~~~~~~~~~~~ 499 (556)
.|+++++.++.+++.|++.++-++.
T Consensus 92 ~a~i~~~~~~~~~~~~~~~~~~~~~ 116 (136)
T PRK13447 92 EAVVRAVRAAQLDAARRARVEQTRL 116 (136)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444444444443433
No 234
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=21.67 E-value=5e+02 Score=27.42 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=8.1
Q ss_pred CCChHHHHHHHHHhh
Q 008721 420 QMSPKKALRAAMLKS 434 (556)
Q Consensus 420 ~~sp~K~~Raa~lk~ 434 (556)
.+.|...+..||...
T Consensus 202 ~i~~p~~v~~Ai~~~ 216 (317)
T TIGR01932 202 KINYSDELSESIYNR 216 (317)
T ss_pred ecCCCHHHHHHHHHH
Confidence 444455566666543
No 235
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=21.47 E-value=4.7e+02 Score=26.28 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccccccccchhHHhh
Q 008721 474 EKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQK------VKPLMCIAFQHIDLVGEC 532 (556)
Q Consensus 474 e~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~------~~~tv~i~~~n~~~~~dl 532 (556)
|+.++.++++..-++.+++...+++........++++++.. .++.|+=...+..||+.|
T Consensus 50 EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~vf~~a~~~lv~~~~~d~~~l~~l 114 (207)
T PRK01005 50 EAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFRESLGEWLEHVLTDPEVSAKL 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34444433333333333344444444444444455555433 233343333345566554
No 236
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=21.41 E-value=3.9e+02 Score=25.09 Aligned_cols=7 Identities=57% Similarity=0.472 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 008721 480 AQIKAAE 486 (556)
Q Consensus 480 a~~~a~e 486 (556)
|+.+|++
T Consensus 38 Aqe~~~~ 44 (137)
T PF09805_consen 38 AQEQAEE 44 (137)
T ss_pred HHHHHHH
Confidence 3333333
No 237
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.26 E-value=5.3e+02 Score=27.44 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008721 461 QQEKERLEQRQRE----EKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQK 514 (556)
Q Consensus 461 ~~e~~~~e~~~~e----e~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~ 514 (556)
+.|-+.+.++|+. ..|.+....+-.++++|..++.+.+.+..+++..+...+.+
T Consensus 152 EeEL~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~ 209 (291)
T PF06098_consen 152 EEELAALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELRE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 238
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.24 E-value=4.1e+02 Score=30.21 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=14.9
Q ss_pred CChHHHHHHHH-----HhhhhhHHH---HHHhhhhh
Q 008721 421 MSPKKALRAAM-----LKSRFADTI---LKAQQRTL 448 (556)
Q Consensus 421 ~sp~K~~Raa~-----lk~rfadtI---lKA~ek~l 448 (556)
..|+-+.|||- =.+++|--. .+-||+|+
T Consensus 73 FDpeaLERaAKAlrein~s~~aK~vfel~r~qE~Tr 108 (630)
T KOG0742|consen 73 FDPEALERAAKALREINHSPYAKDVFELARMQEQTR 108 (630)
T ss_pred CChHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Confidence 45777777762 234555433 34455554
No 239
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=21.19 E-value=5.5e+02 Score=25.45 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=4.8
Q ss_pred ChhhhHHHHHHH
Q 008721 456 DPVKLQQEKERL 467 (556)
Q Consensus 456 dp~~~~~e~~~~ 467 (556)
|--|+.+-+.+.
T Consensus 13 ~~kkakka~~~k 24 (177)
T PF09831_consen 13 DKKKAKKAKKEK 24 (177)
T ss_pred cHHHHHHHHHHH
Confidence 334444433333
No 240
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=21.07 E-value=3.1e+02 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=6.8
Q ss_pred HHhhhhhHHHHHHh
Q 008721 431 MLKSRFADTILKAQ 444 (556)
Q Consensus 431 ~lk~rfadtIlKA~ 444 (556)
-++.|.-+.|-|.-
T Consensus 77 a~e~rlr~li~k~~ 90 (212)
T cd08045 77 ALEERLRNLLEKLI 90 (212)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544443
No 241
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=20.90 E-value=78 Score=28.11 Aligned_cols=34 Identities=6% Similarity=-0.079 Sum_probs=25.6
Q ss_pred CCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 243 PPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 243 ~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+|... .++..-|+||.+|+.|+|+.+|+.+|..
T Consensus 25 ~~F~~l-p~~~~~pdYy~vI~~PmdL~tI~~kl~~ 58 (103)
T cd05517 25 ELFQKL-PSKVLYPDYYAVIKEPIDLKTIAQRIQS 58 (103)
T ss_pred HHHhcC-CCCCCCCCHHHHcCCCcCHHHHHHHHCc
Confidence 344432 2355678999999999999999988863
No 242
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.80 E-value=2.7e+02 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=14.6
Q ss_pred HHHHHhhccccccccccchhHHhhhhhc
Q 008721 509 RVALQKVKPLMCIAFQHIDLVGECCHLC 536 (556)
Q Consensus 509 r~~~~~~~~tv~i~~~n~~~~~dle~l~ 536 (556)
|.+|..-=-.+||. |-++.+-||.+-
T Consensus 31 r~AlKaGL~eieI~--d~eL~~~FeeIa 56 (92)
T PF07820_consen 31 RIALKAGLGEIEIS--DAELQAAFEEIA 56 (92)
T ss_pred HHHHHcccccccCC--HHHHHHHHHHHH
Confidence 33333333344555 777777777764
No 243
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=20.42 E-value=7.1e+02 Score=24.01 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.8
Q ss_pred hHHHHH
Q 008721 543 RWKELL 548 (556)
Q Consensus 543 ~~~~~~ 548 (556)
.|+.+|
T Consensus 101 ~Y~~~l 106 (198)
T PRK03963 101 EYFETL 106 (198)
T ss_pred hHHHHH
Confidence 444443
No 244
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.35 E-value=5.5e+02 Score=28.69 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=4.5
Q ss_pred HHHHhhhhh
Q 008721 440 ILKAQQRTL 448 (556)
Q Consensus 440 IlKA~ek~l 448 (556)
++..|++.+
T Consensus 29 ~l~~R~~~I 37 (445)
T PRK13428 29 LMAARQDTV 37 (445)
T ss_pred HHHHHHHHH
Confidence 444555554
No 245
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=20.06 E-value=3.2e+02 Score=30.42 Aligned_cols=29 Identities=38% Similarity=0.443 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 458 VKLQQEKERLEQRQREEKARIEAQIKAAE 486 (556)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~~a~~~a~e 486 (556)
|-|++..++--.+-||||.||.||--||-
T Consensus 355 EdLQRqHqRELekLreEKdrLLAEETAAT 383 (593)
T KOG4807|consen 355 EDLQRQHQRELEKLREEKDRLLAEETAAT 383 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 55677777666777889999999877763
No 246
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=20.03 E-value=1.7e+02 Score=34.29 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhhCCCCC
Q 008721 168 EFVADVRLTFSNAMLYNPPEN 188 (556)
Q Consensus 168 EF~~DvrLIf~NA~~YN~~~S 188 (556)
+.+.-|..|+.|...|-..++
T Consensus 160 ~ii~~i~~Li~~G~aY~~~gs 180 (651)
T PTZ00399 160 EIVDFIQKIIDNGFAYESNGS 180 (651)
T ss_pred HHHHHHHHHHHCCCEEEECCe
Confidence 334444445555555543333
Done!