Query 008721
Match_columns 556
No_of_seqs 331 out of 1392
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 4.5E-28 1.6E-32 215.9 14.0 111 98-210 5-115 (117)
2 2oss_A HUNK1 protein, bromodom 100.0 5.7E-28 2E-32 218.8 13.2 113 98-210 13-125 (127)
3 4alg_A Bromodomain-containing 99.9 4.8E-28 1.6E-32 226.1 12.1 115 98-212 24-138 (154)
4 2ouo_A HUNK1 protein, bromodom 99.9 6.8E-28 2.3E-32 219.1 10.2 106 105-210 21-129 (130)
5 3d7c_A General control of amin 99.9 5E-27 1.7E-31 207.8 12.2 103 105-209 6-108 (112)
6 3uv5_A Transcription initiatio 99.9 2.9E-27 9.8E-32 237.9 11.8 168 106-276 14-188 (265)
7 2d9e_A Peregrin; four-helix bu 99.9 1.1E-26 3.8E-31 208.7 14.0 107 106-214 7-113 (121)
8 3p1f_A CREB-binding protein; s 99.9 7.5E-27 2.6E-31 208.6 12.1 108 105-212 10-118 (119)
9 3fkm_X Signaling protein; brom 99.9 1E-26 3.4E-31 219.7 13.1 108 102-209 17-124 (166)
10 3q2e_A Bromodomain and WD repe 99.9 1.2E-26 4E-31 208.8 12.7 107 105-213 9-116 (123)
11 3mb4_A Protein polybromo-1; PB 99.9 7.6E-27 2.6E-31 210.2 11.3 111 98-210 7-123 (124)
12 1e6i_A Transcriptional activat 99.9 1.2E-26 4.3E-31 208.3 12.2 103 108-213 15-117 (121)
13 3jvl_A Bromodomain-containing 99.9 3.1E-27 1.1E-31 211.4 8.1 108 103-210 6-116 (120)
14 2yyn_A Transcription intermedi 99.9 1.5E-26 5.1E-31 211.5 12.4 109 102-213 16-126 (135)
15 3mb3_A PH-interacting protein; 99.9 1.6E-26 5.5E-31 210.8 12.5 108 105-214 20-128 (135)
16 2dat_A Possible global transcr 99.9 2.6E-26 9E-31 206.6 12.8 105 103-209 10-120 (123)
17 3nxb_A CAT eye syndrome critic 99.9 2.1E-26 7.2E-31 204.8 11.7 99 107-207 17-115 (116)
18 3rcw_A Bromodomain-containing 99.9 4.7E-26 1.6E-30 207.7 13.0 105 107-213 14-118 (135)
19 2i7k_A Bromodomain-containing 99.9 4.8E-26 1.6E-30 203.7 12.6 102 106-209 8-109 (117)
20 3iu5_A Protein polybromo-1; PB 99.9 2.3E-26 8E-31 204.7 10.3 106 103-210 2-113 (116)
21 2ri7_A Nucleosome-remodeling f 99.9 6.7E-27 2.3E-31 220.7 7.0 106 101-208 67-172 (174)
22 2grc_A Probable global transcr 99.9 6.2E-26 2.1E-30 205.8 13.1 107 103-211 8-121 (129)
23 3ljw_A Protein polybromo-1; al 99.9 1.4E-25 4.7E-30 201.0 12.3 105 105-211 7-117 (120)
24 3hme_A Bromodomain-containing 99.9 1.4E-25 4.9E-30 201.9 12.3 101 106-208 13-113 (123)
25 3mqm_A Probable histone-lysine 99.9 1.3E-25 4.5E-30 202.5 11.8 107 105-213 8-120 (126)
26 3k2j_A Protein polybromo-1; PB 99.9 2.6E-25 8.8E-30 202.3 12.7 105 105-211 16-126 (130)
27 3aad_A Transcription initiatio 99.9 9.2E-26 3.1E-30 230.2 9.0 167 107-276 48-221 (292)
28 3uv4_A Second bromodomain of h 99.9 7.3E-25 2.5E-29 205.6 12.3 104 108-213 27-135 (158)
29 3o36_A Transcription intermedi 99.9 2.9E-24 9.9E-29 204.9 12.8 106 101-209 76-183 (184)
30 3dai_A ATPase family AAA domai 99.9 4.6E-24 1.6E-28 193.7 12.1 105 106-212 10-119 (130)
31 3tlp_A Protein polybromo-1; PB 99.9 1.1E-24 3.8E-29 202.0 8.1 105 107-213 25-136 (150)
32 3u5n_A E3 ubiquitin-protein li 99.9 2.4E-23 8.3E-28 202.3 12.6 110 99-211 74-203 (207)
33 2ro1_A Transcription intermedi 99.9 1.3E-23 4.3E-28 202.2 10.1 104 101-211 71-179 (189)
34 2dkw_A Hypothetical protein KI 99.9 8.2E-23 2.8E-27 186.2 10.8 96 104-206 10-109 (131)
35 3uv5_A Transcription initiatio 99.9 1.8E-22 6.3E-27 203.0 12.9 102 110-213 140-242 (265)
36 3aad_A Transcription initiatio 99.9 4.4E-23 1.5E-27 210.4 7.2 95 117-213 181-275 (292)
37 2r10_A Chromatin structure-rem 99.9 3.9E-22 1.3E-26 208.9 8.7 163 108-276 80-264 (361)
38 2r0y_A Chromatin structure-rem 99.8 6.2E-22 2.1E-26 203.7 7.9 165 106-276 28-214 (311)
39 2r0y_A Chromatin structure-rem 99.8 4.9E-21 1.7E-25 197.1 9.9 90 121-212 178-268 (311)
40 2r10_A Chromatin structure-rem 99.8 6.5E-21 2.2E-25 199.7 9.9 90 121-212 228-318 (361)
41 3iu6_A Protein polybromo-1; PB 99.7 4.4E-17 1.5E-21 151.0 13.4 101 105-211 6-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 1.1E-15 3.7E-20 146.6 6.0 99 103-214 72-170 (183)
43 3fkm_X Signaling protein; brom 70.2 2.3 7.8E-05 39.5 2.8 36 241-276 38-74 (166)
44 3uv4_A Second bromodomain of h 68.5 2.7 9.3E-05 38.8 2.9 38 238-276 44-81 (158)
45 2d9e_A Peregrin; four-helix bu 66.3 4 0.00014 35.8 3.3 35 242-277 25-59 (121)
46 3mqm_A Probable histone-lysine 63.9 8.8 0.0003 33.6 5.2 36 240-276 31-66 (126)
47 3p1f_A CREB-binding protein; s 63.3 2.4 8.1E-05 36.9 1.3 38 240-277 28-66 (119)
48 2oss_A HUNK1 protein, bromodom 62.6 3.9 0.00013 36.2 2.6 37 241-277 38-75 (127)
49 4alg_A Bromodomain-containing 62.4 3.8 0.00013 37.5 2.6 38 240-277 48-86 (154)
50 3hme_A Bromodomain-containing 62.1 5.9 0.0002 34.8 3.6 36 241-277 30-65 (123)
51 3g0l_A Hwalp4, bromodomain adj 60.7 4.3 0.00015 35.1 2.5 37 240-277 29-65 (117)
52 3nxb_A CAT eye syndrome critic 60.3 4.4 0.00015 35.0 2.5 34 242-276 34-67 (116)
53 3rcw_A Bromodomain-containing 58.5 6.7 0.00023 34.8 3.4 36 241-277 30-65 (135)
54 1e6i_A Transcriptional activat 57.3 5.3 0.00018 35.0 2.5 37 240-277 29-65 (121)
55 3dai_A ATPase family AAA domai 55.2 4.6 0.00016 35.8 1.7 35 242-277 28-62 (130)
56 2dat_A Possible global transcr 54.8 13 0.00045 32.4 4.7 36 241-277 36-71 (123)
57 2ouo_A HUNK1 protein, bromodom 54.5 5.6 0.00019 35.3 2.2 35 242-276 43-78 (130)
58 3d7c_A General control of amin 53.6 5.4 0.00019 34.3 1.9 34 242-276 25-58 (112)
59 1ij5_A Plasmodial specific LAV 53.6 13 0.00045 37.3 5.1 34 460-493 46-79 (323)
60 2i7k_A Bromodomain-containing 52.8 6.9 0.00023 34.2 2.4 34 243-277 27-60 (117)
61 3q2e_A Bromodomain and WD repe 51.4 5.8 0.0002 34.7 1.7 35 242-277 28-62 (123)
62 2b5u_A Colicin E3; high resolu 50.8 29 0.00099 37.7 7.2 22 452-473 288-309 (551)
63 3etw_A Adhesin A; antiparallel 50.6 95 0.0033 27.5 9.4 60 460-522 11-70 (119)
64 2ri7_A Nucleosome-remodeling f 49.9 8.9 0.0003 35.2 2.8 35 242-277 90-124 (174)
65 3mb3_A PH-interacting protein; 47.5 7.6 0.00026 34.5 1.9 35 242-277 39-73 (135)
66 1f5n_A Interferon-induced guan 47.3 34 0.0012 37.8 7.5 29 455-483 494-522 (592)
67 3jvl_A Bromodomain-containing 47.1 4.9 0.00017 34.9 0.6 36 242-277 30-66 (120)
68 3k2j_A Protein polybromo-1; PB 46.3 9.1 0.00031 34.0 2.2 36 240-276 39-74 (130)
69 3ljw_A Protein polybromo-1; al 45.9 27 0.00091 30.3 5.1 34 242-276 32-65 (120)
70 2i1j_A Moesin; FERM, coiled-co 45.4 12 0.00042 41.2 3.5 10 431-440 291-300 (575)
71 2yyn_A Transcription intermedi 43.6 9.2 0.00031 34.1 1.8 33 243-277 39-71 (135)
72 1f5n_A Interferon-induced guan 42.9 37 0.0013 37.6 6.8 9 437-445 472-480 (592)
73 2zuo_A MVP, major vault protei 42.6 56 0.0019 37.7 8.3 22 424-445 647-670 (861)
74 3iu5_A Protein polybromo-1; PB 41.8 9.9 0.00034 32.8 1.7 35 242-277 29-63 (116)
75 3u5n_A E3 ubiquitin-protein li 40.3 13 0.00044 35.3 2.4 34 242-277 99-132 (207)
76 2grc_A Probable global transcr 40.3 11 0.00039 33.2 1.9 36 241-277 35-70 (129)
77 2i1j_A Moesin; FERM, coiled-co 39.9 22 0.00075 39.2 4.4 11 13-23 7-17 (575)
78 3mb4_A Protein polybromo-1; PB 37.0 14 0.00049 32.2 1.9 34 242-276 39-72 (124)
79 4gdz_A Uncharacterized protein 35.6 14 0.0005 34.9 1.8 23 506-530 36-58 (175)
80 3oja_A Leucine-rich immune mol 32.2 90 0.0031 32.7 7.6 11 438-448 331-341 (487)
81 2dkw_A Hypothetical protein KI 30.5 15 0.00052 32.7 1.0 22 255-276 37-58 (131)
82 3tlp_A Protein polybromo-1; PB 27.5 25 0.00084 31.7 1.9 34 242-276 49-82 (150)
83 1ij5_A Plasmodial specific LAV 26.3 1E+02 0.0036 30.6 6.5 20 474-493 38-57 (323)
84 3o36_A Transcription intermedi 24.3 19 0.00066 33.3 0.5 23 255-277 110-132 (184)
85 3err_A Fusion protein of micro 22.2 83 0.0028 34.4 5.1 18 456-473 3-20 (536)
86 3adg_A F21M12.9 protein; HYL1, 20.4 60 0.0021 25.4 2.7 17 500-516 56-72 (73)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=4.5e-28 Score=215.87 Aligned_cols=111 Identities=29% Similarity=0.569 Sum_probs=104.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008721 98 DKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (556)
Q Consensus 98 kkr~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (556)
++..+.+...+..|..||..|+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||
T Consensus 5 ~k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (117)
T 3g0l_A 5 KKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF 82 (117)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3444566678899999999999999999999999987 69999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 178 ~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
.||++||+++|.++.+|..|++.|++.|.++..
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 83 DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998753
No 2
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=5.7e-28 Score=218.78 Aligned_cols=113 Identities=38% Similarity=0.690 Sum_probs=105.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008721 98 DKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (556)
Q Consensus 98 kkr~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (556)
.+..+++..+...|..||..|++|+.+|+|..||++.+..+||||++|++||||+||++||.+|.|.++++|.+||+|||
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455777888889999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 178 ~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
.||++||+++|.|+.+|..|++.|++.|.+++.
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 93 TNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999988753
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=4.8e-28 Score=226.13 Aligned_cols=115 Identities=37% Similarity=0.651 Sum_probs=107.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008721 98 DKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (556)
Q Consensus 98 kkr~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (556)
+++.+++..+...|..||+.|++++.+|+|..||++.++++||||++|++||||+||++||.++.|.++++|..||+|||
T Consensus 24 ~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 24 KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp --CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34456788888899999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhh
Q 008721 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (556)
Q Consensus 178 ~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~ 212 (556)
.||++||++++.|+.+|..|+++|++.|..++...
T Consensus 104 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 104 TNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 99999999999999999999999999999887543
No 4
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=6.8e-28 Score=219.10 Aligned_cols=106 Identities=39% Similarity=0.732 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCC---CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 105 RGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~---s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
...++.|..||..|+.++. +|+|+.||++...++||||++|++||||+||++||.+|.|.++++|.+||+|||.||+
T Consensus 21 ~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999875 8999999999877899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
+||+++|.|+.+|..|++.|++.|.+++.
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998763
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=5e-27 Score=207.77 Aligned_cols=103 Identities=31% Similarity=0.573 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
..+...|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 467799999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 185 PPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
+++|.++.+|..|++.|++.|+++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998764
No 6
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=2.9e-27 Score=237.95 Aligned_cols=168 Identities=21% Similarity=0.338 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
.+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 67789999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHhhhcccCC---c-CC--ccccccCcccccc-cccCCCCCCCCCCCCCCCCccchhh
Q 008721 186 PENNVHKMAQELNNLFDIKWKSLEEKWSSEVP---K-AG--LGKILSGKMMEVN-DTRQNCPKTPPLHSTLSSKKSKMSE 258 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~---~-~~--~~~~~s~~~~ei~-~~~~~~~k~~p~~~~v~~K~~~~~~ 258 (556)
++|.|+.+|..|.+.|+..|.++..++..... . .. ....++.....+. ......+..+||..+|.++ ..|+|
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~-~~pdY 170 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK-FVPDY 170 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT-TSTTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChh-HhCcH
Confidence 99999999999999999999998765542110 0 00 0000111111111 2235567789999999865 47899
Q ss_pred hhhhhcccchhHHHhhhc
Q 008721 259 EKAARSSYCARAVEVERA 276 (556)
Q Consensus 259 ~k~l~~~~d~~~~~~~ls 276 (556)
+.+|+.|||+.+|+.+|.
T Consensus 171 ~~iIk~Pmdl~tI~~kl~ 188 (265)
T 3uv5_A 171 YKVIVNPMDLETIRKNIS 188 (265)
T ss_dssp HHHCSSCCCHHHHHHHHH
T ss_pred HHHhCCcccHHHHHHHHh
Confidence 999999999999998886
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=208.67 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
.+...|..||..|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||+
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999986 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 008721 186 PENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~~k~i~~k~~~ 214 (556)
++|.+|.+|..|++.|+..|..+...+..
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877653
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=7.5e-27 Score=208.57 Aligned_cols=108 Identities=35% Similarity=0.605 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhh
Q 008721 105 RGVTHQCSVILKSLMM-HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~-~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (556)
.++...|..+|..|+. ++.+|||..||++..+++||||++|++||||+||++||.+|.|.++++|..||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988 689999999999876679999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHhhh
Q 008721 184 NPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (556)
Q Consensus 184 N~~~S~V~~~A~~Lek~Fek~~k~i~~k~ 212 (556)
|+++|.++.+|..|++.|++.|..+...+
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987654
No 9
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1e-26 Score=219.67 Aligned_cols=108 Identities=28% Similarity=0.510 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 008721 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (556)
Q Consensus 102 ~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (556)
.+...+...|..||..|+.++.+++|..||++.+..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999887899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 182 LYNPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 182 ~YN~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
+||++++.|+.+|..|+++|++.|..+.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999875
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=208.75 Aligned_cols=107 Identities=36% Similarity=0.608 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
..+.++|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 185 ~~-~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
++ ++.||.+|..|++.|++.|..+...+.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999999999998876
No 11
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=7.6e-27 Score=210.22 Aligned_cols=111 Identities=26% Similarity=0.408 Sum_probs=101.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc------CCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHH
Q 008721 98 DKRPKMDRGVTHQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171 (556)
Q Consensus 98 kkr~~l~~~~~k~c~~IL~~L~~------~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~ 171 (556)
.++.++...+...|..||+.|+. ++.+++|..||+.. .+||||++|++||||+||++||.+|.|.++++|..
T Consensus 7 ~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~ 84 (124)
T 3mb4_A 7 PKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVE 84 (124)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHH
T ss_pred CCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHH
Confidence 44555677888999999999998 45579999999966 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 172 DVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 172 DvrLIf~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
||+|||.||++||+++|.||.+|..|++.|++.|+++..
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998763
No 12
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.2e-26 Score=208.26 Aligned_cols=103 Identities=35% Similarity=0.664 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCC
Q 008721 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (556)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~ 187 (556)
...|..||..|+.|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 579999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 188 NNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 188 S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
|.++.+|..|++.|++.|..++ .|.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p-~~~ 117 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIP-EYS 117 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG-GGG
T ss_pred CHHHHHHHHHHHHHHHHHHHcc-ccc
Confidence 9999999999999999999885 443
No 13
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=3.1e-27 Score=211.36 Aligned_cols=108 Identities=38% Similarity=0.704 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCC---CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 008721 103 MDRGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~~---s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (556)
....+++.|..||..|+.++. +|||..||++...++||||++|++||||+||++||.+|.|.++++|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999987 99999999988666999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
|++||+++|.|+.+|..|++.|++.|.+++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999998864
No 14
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=211.50 Aligned_cols=109 Identities=36% Similarity=0.616 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q 008721 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 102 ~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DvrLIf~N 179 (556)
.|++.+++.|..||..|++|+.+++|..||+. .+||||++|++||||+||++||.+ +.|.++++|.+||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999986 599999999999999999999998 5899999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
|++||+++|.||.+|..|++.|++.|.++...+.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999876543
No 15
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=210.79 Aligned_cols=108 Identities=31% Similarity=0.549 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhC
Q 008721 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (556)
..+.+.|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 008721 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (556)
Q Consensus 185 ~~-~S~V~~~A~~Lek~Fek~~k~i~~k~~~ 214 (556)
++ ++.||.+|..|+++|++.|..+...|..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 8999999999999999999999888763
No 16
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=2.6e-26 Score=206.56 Aligned_cols=105 Identities=22% Similarity=0.342 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008721 103 MDRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLI 176 (556)
..+.+.+.|..||+.|++++ .+++|..||+.. .+||||++|++||||+||++||.++.|.++++|.+||+||
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 87 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLL 87 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 35678899999999999986 589999999965 8999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 177 f~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
|.||++||++++.||.+|..|+++|++.+++++
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998775
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.93 E-value=2.1e-26 Score=204.83 Aligned_cols=99 Identities=29% Similarity=0.544 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||++
T Consensus 17 ~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 94 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGE 94 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999987 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 008721 187 ENNVHKMAQELNNLFDIKWKS 207 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~ 207 (556)
+|.|+.+|..|++.|++.|.+
T Consensus 95 ~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 95 SSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=207.75 Aligned_cols=105 Identities=26% Similarity=0.419 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||++
T Consensus 14 l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (135)
T 3rcw_A 14 LTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91 (135)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6789999999999999999999999987 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 187 ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
++.+|.+|..|++.|+..|..+...+.
T Consensus 92 ~s~~~~~A~~L~~~~~~~~~~~~~~~~ 118 (135)
T 3rcw_A 92 DTVFYRAAVRLRDQGGVVLRQARREVD 118 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877654
No 19
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=203.68 Aligned_cols=102 Identities=26% Similarity=0.364 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
.+...|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.||++||+
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999975 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 186 PENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
++|.++.+|..|++.|++.+....
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=204.68 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHcCC------CCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008721 103 MDRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLI 176 (556)
|+...+..|..|++.|+++. .+++|..||+.. .+||||++|++||||+||++||.+|.|.++++|..||+||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 79 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLL 79 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56677899999999999884 499999999965 7999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHh
Q 008721 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (556)
Q Consensus 177 f~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~ 210 (556)
|.||++||+++|.+|.+|..|++.|++.++++..
T Consensus 80 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 80 FNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 21
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.93 E-value=6.7e-27 Score=220.72 Aligned_cols=106 Identities=36% Similarity=0.636 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008721 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (556)
Q Consensus 101 ~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (556)
..|+...+..|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.||
T Consensus 67 ~~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 144 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 144 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999986 79999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 008721 181 MLYNPPENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 181 ~~YN~~~S~V~~~A~~Lek~Fek~~k~i 208 (556)
++||++++.|+.+|..|+++|++.|+.+
T Consensus 145 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 145 RYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988765
No 22
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=6.2e-26 Score=205.83 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008721 103 MDRGVTHQCSVILKSLMMHP-------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRL 175 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~-------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrL 175 (556)
-.+.+...|..||+.|++++ .+++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35678899999999999885 489999999965 899999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 176 If~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||.||++||+++|.||.+|..|++.|++.|..++..
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999865
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=1.4e-25 Score=200.96 Aligned_cols=105 Identities=26% Similarity=0.464 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
..+...|..|+..|..+.+ +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 4677899999999998877 99999999965 899999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||++||+++|.|+.+|..|++.|++.|.+++..
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999864
No 24
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=201.91 Aligned_cols=101 Identities=30% Similarity=0.377 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
.+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||+
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 008721 186 PENNVHKMAQELNNLFDIKWKSL 208 (556)
Q Consensus 186 ~~S~V~~~A~~Lek~Fek~~k~i 208 (556)
+++.+|.+|..|++.|.+.|.+.
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 25
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=202.51 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
..+...|..|++.|+.+.+ +|||..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3467899999999998754 99999999976 799999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
||++||+++|.+|.+|..|++.|++.|.++..++.
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764
No 26
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=202.33 Aligned_cols=105 Identities=24% Similarity=0.386 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
..+..+|..|++.|..+.. ++||..||+.. .+||||++|++||||+||++||.++.|.++++|..||+|||.
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4577899999999998754 99999999965 899999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||++||+++|.|+.+|..|++.|++.|+++...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998764
No 27
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.92 E-value=9.2e-26 Score=230.16 Aligned_cols=167 Identities=22% Similarity=0.347 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCC
Q 008721 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~ 186 (556)
+...|..||+.|+.++.+++|+.||++. .+||||+||++||||+||++||++|.|.++.+|..||+|||.||++||++
T Consensus 48 l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 48 LSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999987 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHhhhcccCCcCCc------cccccCcccccc-cccCCCCCCCCCCCCCCCCccchhhh
Q 008721 187 ENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGL------GKILSGKMMEVN-DTRQNCPKTPPLHSTLSSKKSKMSEE 259 (556)
Q Consensus 187 ~S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~------~~~~s~~~~ei~-~~~~~~~k~~p~~~~v~~K~~~~~~~ 259 (556)
++.|+.+|..|.+.|++.|..+...+......... ...++....++. ..-...+..+||..+|.++ ..|+|+
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~i~Pl~dd~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~-~~pdY~ 204 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK-FVPDYY 204 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTT-TSTTHH
T ss_pred chHHHHHHHHHHHHHHhhhhcchhhhhhhhhccccccccchhHHHHHHHHHHhhhhhhcCcchhHHHhccccc-ccccHH
Confidence 99999999999999999998876554311000000 000111111111 1224567789999999754 579999
Q ss_pred hhhhcccchhHHHhhhc
Q 008721 260 KAARSSYCARAVEVERA 276 (556)
Q Consensus 260 k~l~~~~d~~~~~~~ls 276 (556)
.+|+.|||+.+|+.+|.
T Consensus 205 ~iIk~PmdL~tI~~kl~ 221 (292)
T 3aad_A 205 KVIVNPMDLETIRKNIS 221 (292)
T ss_dssp HHCSSCCCHHHHHHHHH
T ss_pred HHcCCcCCHHHHHHHHh
Confidence 99999999999998886
No 28
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=7.3e-25 Score=205.58 Aligned_cols=104 Identities=33% Similarity=0.627 Sum_probs=95.1
Q ss_pred HHHHHHHHHH-----HHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 108 THQCSVILKS-----LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 108 ~k~c~~IL~~-----L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
...|..||.. |+.++.+|||..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4555555555 45579999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
||++++.|+.+|..|.+.|...|.++.+.+.
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987765
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.9e-24 Score=204.92 Aligned_cols=106 Identities=37% Similarity=0.637 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 008721 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 101 ~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DvrLIf~ 178 (556)
..|.+.+++.|..||..|+.++.+++|..||+. .+||||++|++||||+||++||.+ +.|.++++|.+||+|||.
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~ 152 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 152 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999999999999985 489999999999999999999998 789999999999999999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 008721 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~ 209 (556)
||++||++++.|+.+|..|+++|++.|+++.
T Consensus 153 Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 153 NCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998763
No 30
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=4.6e-24 Score=193.65 Aligned_cols=105 Identities=30% Similarity=0.501 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCC
Q 008721 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (556)
.+...|..++..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||.||++||+
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHH-HhHhhh
Q 008721 186 PENNV----HKMAQELNNLFDIKWK-SLEEKW 212 (556)
Q Consensus 186 ~~S~V----~~~A~~Lek~Fek~~k-~i~~k~ 212 (556)
++|++ +.+|..|++.+...+. .+.+.+
T Consensus 88 ~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 88 DRDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99866 7888999998888885 554444
No 31
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=201.97 Aligned_cols=105 Identities=25% Similarity=0.383 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 008721 107 VTHQCSVILKSLMMHPA-------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (556)
Q Consensus 107 ~~k~c~~IL~~L~~~~~-------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (556)
...+|..|+..|+++.. +++|..||+.. .+||||++|++||||+||++||.+|.|.++++|..||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35788888888887654 89999999965 8999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 180 A~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
|++||++++.||.+|..|+++|++.|+++.....
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999875543
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2.4e-23 Score=202.25 Aligned_cols=110 Identities=33% Similarity=0.580 Sum_probs=103.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 008721 99 KRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRL 175 (556)
Q Consensus 99 kr~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DvrL 175 (556)
....|++.++..|..||..|+.++.+++|+.||+. .+||||+||++||||+||++||.+ |.|.++.+|..||+|
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 44678999999999999999999999999999985 599999999999999999999997 799999999999999
Q ss_pred HHHHhhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 176 TFSNAMLYNP-----------------PENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 176 If~NA~~YN~-----------------~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||.||++||+ +++.|+.+|..|+.+|+..|+++...
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999999999988653
No 33
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=202.22 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHH
Q 008721 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIIS--KPMDLGTVKTRLDRN---LYSVSDEFVADVRL 175 (556)
Q Consensus 101 ~~l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk--~PMDL~TIkkKL~~~---~Y~S~~EF~~DvrL 175 (556)
..|++..+++|..||..|+.|+.+|||++||+ |+||.||+ +||||+||++||.++ .|.++++|++||+|
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~L 144 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGR 144 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 46899999999999999999999999999998 67999998 899999999999999 99999999999999
Q ss_pred HHHHhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 176 If~NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||.||++|| +++.++.+|..|+++|++.|+++...
T Consensus 145 if~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 145 MFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999 58889999999999999999998754
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=186.20 Aligned_cols=96 Identities=29% Similarity=0.472 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhh
Q 008721 104 DRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (556)
Q Consensus 104 ~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (556)
..++...|..||+.|+.++.++||..| +||||+||++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 008721 184 NPPENN----VHKMAQELNNLFDIKWK 206 (556)
Q Consensus 184 N~~~S~----V~~~A~~Lek~Fek~~k 206 (556)
|+++|+ |+.+|..|++.|...+.
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999985 57899999999988885
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=1.8e-22 Score=202.96 Aligned_cols=102 Identities=31% Similarity=0.614 Sum_probs=93.1
Q ss_pred HHHHHHHH-HHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCC
Q 008721 110 QCSVILKS-LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEN 188 (556)
Q Consensus 110 ~c~~IL~~-L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S 188 (556)
.|..++.. |+.++.+|||+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|
T Consensus 140 il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 140 ILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp HHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444433 66789999999999976 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc
Q 008721 189 NVHKMAQELNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 189 ~V~~~A~~Lek~Fek~~k~i~~k~~ 213 (556)
.||.+|..|+..|...|..+.+.+.
T Consensus 218 ~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=4.4e-23 Score=210.36 Aligned_cols=95 Identities=33% Similarity=0.656 Sum_probs=90.4
Q ss_pred HHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHH
Q 008721 117 SLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196 (556)
Q Consensus 117 ~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~ 196 (556)
.|+.++.+|+|+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.||.+|..
T Consensus 181 ~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~ 258 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQE 258 (292)
T ss_dssp TGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred hhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 367889999999999975 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhc
Q 008721 197 LNNLFDIKWKSLEEKWS 213 (556)
Q Consensus 197 Lek~Fek~~k~i~~k~~ 213 (556)
|++.|+..|..+...+.
T Consensus 259 L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 259 IVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887664
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=3.9e-22 Score=208.90 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhhhhC
Q 008721 108 THQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAMLYN 184 (556)
Q Consensus 108 ~k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DvrLIf~NA~~YN 184 (556)
...|..+|+.+.+. ..+++|+.||+.. .+||||+||++||||+||++|| +.|. ++++|..||+|||.||++||
T Consensus 80 ~~~~~~~l~~l~~~~~~~~~~F~~p~~~~--~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 80 NRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHcCCcccHHhcCCCCcc--cCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 46788888888664 4589999999955 8999999999999999999998 5555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHhhhcccCCcCCc---------cccccCcccc----c------ccccCCCCCCCCC
Q 008721 185 PPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGL---------GKILSGKMME----V------NDTRQNCPKTPPL 245 (556)
Q Consensus 185 ~~~S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~---------~~~~s~~~~e----i------~~~~~~~~k~~p~ 245 (556)
+++|.||.+|..|+++|+..|.+... .......... ...+...... + ......-+-.+||
T Consensus 156 ~~~s~i~~~a~~l~~~~~~~~~k~k~-~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F 234 (361)
T 2r10_A 156 EYDSLIVKNSMQVVMLIEFEVLKAKN-LKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPF 234 (361)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHT-TTTCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc-cCCcCcCCHHHHHHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcc
Confidence 99999999999999999998886521 1000000000 0000000000 0 0011234568899
Q ss_pred CCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 246 HSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 246 ~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 235 ~~pvd~~-~~PdY~~iIk~PmDL~tI~~kl~ 264 (361)
T 2r10_A 235 MELVDKD-ELPEYYEIVHSPMALSIVKQNLE 264 (361)
T ss_dssp SSCCCTT-TCTHHHHHCSSCCCHHHHHHHHH
T ss_pred cCCCChh-hcccHHHHhcCcccHHHHHHHHh
Confidence 9999865 57999999999999999988885
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=6.2e-22 Score=203.74 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhhh
Q 008721 106 GVTHQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAML 182 (556)
Q Consensus 106 ~~~k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DvrLIf~NA~~ 182 (556)
.+...|..+|..+.+. ..+++|+.||+.. .+||||+||++||||+||++|| +.|. ++++|..||+|||.||++
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~--~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~ 103 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 103 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHH
Confidence 3556666777776653 4589999999955 8999999999999999999999 5555 899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHhhhcccCCcCCc-----c----ccccCcccc----c------ccccCCCCCCC
Q 008721 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGL-----G----KILSGKMME----V------NDTRQNCPKTP 243 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~-----~----~~~s~~~~e----i------~~~~~~~~k~~ 243 (556)
||+++|.||.+|..|+++|.+.|.+... .......... . ..+...... + ......-+-.+
T Consensus 104 yN~~~s~i~~~A~~l~~~~~~~~~k~k~-~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~ 182 (311)
T 2r0y_A 104 YNEYDSLIVKNSMQVVMLIEFEVLKAKN-LKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSE 182 (311)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHT-GGGCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTG
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhccc-CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHH
Confidence 9999999999999999999999887521 1100000000 0 000000000 0 00112345688
Q ss_pred CCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 244 PLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 244 p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 183 ~F~~pvd~~-~~PdY~~iIk~PMDL~tI~~kl~ 214 (311)
T 2r0y_A 183 PFMELVDKD-ELPEYYEIVHSPMALSIVKQNLE 214 (311)
T ss_dssp GGSSCCCTT-TCHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHhCCCChh-hcccHHHHhCCccCHHHHHHHHH
Confidence 999999865 47999999999999999988885
No 39
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=4.9e-21 Score=197.09 Aligned_cols=90 Identities=30% Similarity=0.452 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 008721 121 HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (556)
Q Consensus 121 ~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~ 200 (556)
|+.+|+|+.||++. .+||||+||++||||+||++||.+|.|.++++|..||+|||.||++||+++|.||.+|..|+++
T Consensus 178 ~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 178 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 57899999999976 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-Hhhh
Q 008721 201 FDIKWKSL-EEKW 212 (556)
Q Consensus 201 Fek~~k~i-~~k~ 212 (556)
|+..|.+. ...|
T Consensus 256 f~~~~~~~~~p~~ 268 (311)
T 2r0y_A 256 FNYLIQKEFFPEL 268 (311)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHhcCCcc
Confidence 99999983 3444
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.83 E-value=6.5e-21 Score=199.67 Aligned_cols=90 Identities=30% Similarity=0.452 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 008721 121 HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (556)
Q Consensus 121 ~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~~~S~V~~~A~~Lek~ 200 (556)
|+.+|+|+.||++. .+||||+||++||||+||++||.+|.|.++++|..||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999976 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-Hhhh
Q 008721 201 FDIKWKSL-EEKW 212 (556)
Q Consensus 201 Fek~~k~i-~~k~ 212 (556)
|+..|.+. ...|
T Consensus 306 f~~~~~~~~~p~~ 318 (361)
T 2r10_A 306 FNYLIQKEFFPEL 318 (361)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHhcCCcc
Confidence 99999973 3344
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=150.96 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 008721 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (556)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (556)
..++..+..|+..|+++.+ +.+|+..++ +. |+||. ++||+|.+|++||.+|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPs--k~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPA--VD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCS--SC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCC--CC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3567889999999999854 779998544 43 89998 999999999999999999999999999999999
Q ss_pred HhhhhCCCCCHHHHHHHHHHHHHHHHHHHhHhh
Q 008721 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (556)
Q Consensus 179 NA~~YN~~~S~V~~~A~~Lek~Fek~~k~i~~k 211 (556)
||++||.++|+||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998765
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.58 E-value=1.1e-15 Score=146.60 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCcccccCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 008721 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (556)
Q Consensus 103 l~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (556)
+..+++..+..||..|..++.++||+.+ .++.||||.||++||+.|.|.++.+|..||.|||.||..
T Consensus 72 ~~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~ 138 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAIN 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Confidence 3456667889999999999999999762 259999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 008721 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (556)
Q Consensus 183 YN~~~S~V~~~A~~Lek~Fek~~k~i~~k~~~ 214 (556)
||.+++.+..++..|+.+|++.++.+..-++.
T Consensus 139 ~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 139 SDGGQPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred ccCCChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 99999999999999999999999998765553
No 43
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=70.20 E-value=2.3 Score=39.51 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhc
Q 008721 241 KTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 241 k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 38 ~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~ 74 (166)
T 3fkm_X 38 GGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLK 74 (166)
T ss_dssp TGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHH
T ss_pred CChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHc
Confidence 4567888888754 68999999999999999988886
No 44
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=68.55 E-value=2.7 Score=38.79 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 238 NCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 238 ~~~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..+..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 44 ~~~~s~~F~~PVd~~-~~PdY~~iIk~PMDL~tI~~kl~ 81 (158)
T 3uv4_A 44 AVPDSWPFHHPVNKK-FVPDYYKVIVNPMDLETIRKNIS 81 (158)
T ss_dssp TSTTCGGGTSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred cCCCchhhcCcCChh-hcccHHHHcCCccCHHHHHHHHH
Confidence 345677888888755 57899999999999999998886
No 45
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.27 E-value=4 Score=35.85 Aligned_cols=35 Identities=0% Similarity=-0.166 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 25 ~~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~~ 59 (121)
T 2d9e_A 25 GNIFSEPVPLS-EVPDYLDHIKKPMDFFTMKQNLEA 59 (121)
T ss_dssp SCSSSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cHhhCCcCCcc-ccCCHHHHcCCCcCHHHHHHHHhc
Confidence 46788888765 578999999999999999888863
No 46
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=63.93 E-value=8.8 Score=33.63 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+-.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 31 ~~s~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~ 66 (126)
T 3mqm_A 31 ALAAPLLNLPPKK-KNADYYEKISDPLDLITIEKQIL 66 (126)
T ss_dssp BTTGGGSSCCCGG-GCTTHHHHCSSCCCHHHHHHHHH
T ss_pred ChhHHhcCCCCcc-cCCCHHHHcCCCCCHHHHHHHHH
Confidence 3456777776643 67899999999999999988875
No 47
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=63.28 E-value=2.4 Score=36.95 Aligned_cols=38 Identities=5% Similarity=0.099 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+.++||..+|.+.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 28 ~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~ 66 (119)
T 3p1f_A 28 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 66 (119)
T ss_dssp TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred CCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhc
Confidence 45678888888764 479999999999999999888863
No 48
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=62.64 E-value=3.9 Score=36.22 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCC-ccchhhhhhhhcccchhHHHhhhcc
Q 008721 241 KTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 241 k~~p~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
..+||..+|.+. ...|+|+.+|+.|||+.+|+.+|..
T Consensus 38 ~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~ 75 (127)
T 2oss_A 38 FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN 75 (127)
T ss_dssp TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHc
Confidence 467888888874 5689999999999999999888863
No 49
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=62.37 E-value=3.8 Score=37.53 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+..+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 48 ~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~ 86 (154)
T 4alg_A 48 QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLEN 86 (154)
T ss_dssp TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhc
Confidence 45788988888765 589999999999999999888863
No 50
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=62.07 E-value=5.9 Score=34.78 Aligned_cols=36 Identities=0% Similarity=-0.172 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
...+|..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 30 ~~~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~~ 65 (123)
T 3hme_A 30 PHGFFAFPVTDA-IAPGYSMIIKHPMDFGTMKDKIVA 65 (123)
T ss_dssp TTCSSSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred ccHhhcCCCChh-hccCHHHHCCCCCCHHHHHHHhcc
Confidence 345777777654 578999999999999999888863
No 51
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=60.66 E-value=4.3 Score=35.13 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 29 ~~s~~F~~pv~~~-~~pdY~~~I~~Pmdl~tI~~kl~~ 65 (117)
T 3g0l_A 29 EDAWPFLLPVNLK-LVPGYKKVIKKPMDFSTIREKLSS 65 (117)
T ss_dssp TTCGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred CCchhhcCcCChh-hcCChHHHcCCCCCHHHHHHHHhC
Confidence 3467787787765 368999999999999999888863
No 52
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=60.27 E-value=4.4 Score=35.01 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
++||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 34 s~~F~~pv~~~-~~pdY~~~I~~Pmdl~tI~~kl~ 67 (116)
T 3nxb_A 34 SWPFLEPVDES-YAPNYYQIIKAPMDISSMEKKLN 67 (116)
T ss_dssp CGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred cHhhcCcCChh-hccChHHHcCCCCCHHHHHHHHc
Confidence 56777777765 46899999999999999988886
No 53
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=58.46 E-value=6.7 Score=34.84 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 30 ~~~~F~~pv~~~-~~pdY~~iI~~PmdL~tI~~kl~~ 65 (135)
T 3rcw_A 30 PARIFAQPVSLK-EVPDYLDHIKHPMDFATMRKRLEA 65 (135)
T ss_dssp TTCSSSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cchhhcCCCChh-hcCCHHHHhCCCCCHHHHHHHHhc
Confidence 356787777765 578999999999999999888863
No 54
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=57.34 E-value=5.3 Score=34.98 Aligned_cols=37 Identities=5% Similarity=0.026 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+..+||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 29 ~~a~~F~~pvd~~-~~pdY~~iIk~PmdL~tI~~kl~~ 65 (121)
T 1e6i_A 29 AAAWPFLQPVNKE-EVPDYYDFIKEPMDLSTMEIKLES 65 (121)
T ss_dssp TTCGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred CCchhhCCCCChh-hCcCHHHHcCCCCCHHHHHHHHhc
Confidence 3456777777754 578999999999999999888863
No 55
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=55.22 E-value=4.6 Score=35.77 Aligned_cols=35 Identities=3% Similarity=-0.118 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 28 ~~~F~~pv~~~-~~pdY~~iI~~PmdL~tI~~kl~~ 62 (130)
T 3dai_A 28 FRVFTKPVDPD-EVPDYVTVIKQPMDLSSVISKIDL 62 (130)
T ss_dssp GGGGSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cHhhcCCCChh-hcCCHHHHcCCCCCHHHHHHHHhC
Confidence 45666666655 478999999999999999988863
No 56
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.83 E-value=13 Score=32.42 Aligned_cols=36 Identities=8% Similarity=-0.091 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
-.+||..+|.. ...|+|+.+|+.|||+.+|+.+|..
T Consensus 36 ~s~~F~~pv~~-~~~pdY~~iIk~PmdL~tI~~kl~~ 71 (123)
T 2dat_A 36 LSEVFIQLPSR-KELPEYYELIRKPVDFKKIKERIRN 71 (123)
T ss_dssp SGGGGTSCCCT-TTSCHHHHHCSSCCCHHHHHHHHTT
T ss_pred eeHHhcCCCCc-ccCCCHHHHcCCCCCHHHHHHHHhC
Confidence 45667777653 4578999999999999999998863
No 57
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=54.48 E-value=5.6 Score=35.29 Aligned_cols=35 Identities=3% Similarity=-0.021 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCc-cchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 43 a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~ 78 (130)
T 2ouo_A 43 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLE 78 (130)
T ss_dssp HGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHH
T ss_pred HHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHH
Confidence 356777777654 47999999999999999988886
No 58
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=53.64 E-value=5.4 Score=34.28 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.+||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 25 ~~~F~~pvd~~-~~pdY~~iIk~PmdL~tI~~kl~ 58 (112)
T 3d7c_A 25 AWPFMEPVKKS-EAPDYYEVIRFPIDLKTMTERLR 58 (112)
T ss_dssp GGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred chhhcCCCCcc-cccCHHHHccCCcCHHHHHHHHc
Confidence 35666666654 57899999999999999988886
No 59
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=53.59 E-value=13 Score=37.27 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 460 LQQEKERLEQRQREEKARIEAQIKAAEAASRMKA 493 (556)
Q Consensus 460 ~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~ 493 (556)
+.++++|.++.+.|+-.|++.+..|.|.++|.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (323)
T 1ij5_A 46 IAQKEQEQKAKLAEYDQKVQNEFDARERAERERE 79 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhhHHHHHHHH
Confidence 3355555555555555566555555555555544
No 60
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=52.85 E-value=6.9 Score=34.18 Aligned_cols=34 Identities=0% Similarity=-0.153 Sum_probs=27.0
Q ss_pred CCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 243 PPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 243 ~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
++|..+|.+ ...|+|+.+|+.|||+.+|+.+|..
T Consensus 27 ~~F~~PVd~-~~~pdY~~iIk~PMDL~tI~~kl~~ 60 (117)
T 2i7k_A 27 AFFSFPVTD-FIAPGYSMIIKHPMDFSTMKEKIKN 60 (117)
T ss_dssp GTSSSCCCT-TTSSSHHHHCSCCCCHHHHHHHHTT
T ss_pred HHhcCCCCc-cccCCHHHHhCCCCCHHHHHHHHHc
Confidence 456666654 4568999999999999999998863
No 61
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=51.41 E-value=5.8 Score=34.72 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 28 s~~F~~pv~~~-~~pdY~~~I~~PmdL~tI~~kl~~ 62 (123)
T 3q2e_A 28 SEPFRQPVDLV-EYPDYRDIIDTPMDFGTVRETLDA 62 (123)
T ss_dssp GGGGSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cHhhcCCCChh-hcCCHHHHcCCCCCHHHHHHHHhc
Confidence 45676676654 478999999999999999888863
No 62
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=50.77 E-value=29 Score=37.75 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=14.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHH
Q 008721 452 GDKADPVKLQQEKERLEQRQRE 473 (556)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~e 473 (556)
-+--++..|.|..||--|||+|
T Consensus 288 s~ilt~~elkqrqeee~r~~qe 309 (551)
T 2b5u_A 288 SDVLSPDQVKQRQDEENRRQQE 309 (551)
T ss_dssp EECCCHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHH
Confidence 3456677676666666666666
No 63
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.63 E-value=95 Score=27.54 Aligned_cols=60 Identities=22% Similarity=0.157 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008721 460 LQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKVKPLMCIA 522 (556)
Q Consensus 460 ~~~e~~~~e~~~~ee~ar~~a~~~a~e~a~~~~~~~~~~~~~~~~~e~~r~~~~~~~~tv~i~ 522 (556)
|.+=-.++++.+++|.+|...+..-||+|++.-+.-.+-++.-.+|+ ..++.|++|..+.
T Consensus 11 l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~---~~i~~~~~~~~yk 70 (119)
T 3etw_A 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRA---QRLQAEANTRFYK 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccchHH
Confidence 44445678888899999999999999998877654433333222222 2344566665544
No 64
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=49.85 E-value=8.9 Score=35.19 Aligned_cols=35 Identities=6% Similarity=0.012 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 90 ~~~F~~pv~~~-~~pdY~~~I~~PmdL~tI~~kl~~ 124 (174)
T 2ri7_A 90 AWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQR 124 (174)
T ss_dssp GTTTSSCCCTT-TCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred hhhhhcCCCcc-cCCchHHHhCCcCCHHHHHHHHHc
Confidence 35677777654 578999999999999999988863
No 65
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=47.52 E-value=7.6 Score=34.47 Aligned_cols=35 Identities=6% Similarity=-0.021 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.+ ...|+|+.+|+.|||+.+|+.+|..
T Consensus 39 s~~F~~pv~~-~~~pdY~~iI~~Pmdl~tI~~kl~~ 73 (135)
T 3mb3_A 39 SEPFRQPVDL-LEYPDYRDIIDTPMDFATVRETLEA 73 (135)
T ss_dssp GGGGSSCCCT-TTSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred ChhhcCCCCh-hhCCCHHHHhCCCcCHHHHHHHHhC
Confidence 4667777665 4568999999999999999988863
No 66
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.33 E-value=34 Score=37.83 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=14.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008721 455 ADPVKLQQEKERLEQRQREEKARIEAQIK 483 (556)
Q Consensus 455 ~dp~~~~~e~~~~e~~~~ee~ar~~a~~~ 483 (556)
+.-|-+++|.+.|+.+|++....++++.+
T Consensus 494 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 494 VKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555433
No 67
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=47.13 E-value=4.9 Score=34.93 Aligned_cols=36 Identities=3% Similarity=-0.043 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCcc-chhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKS-KMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~-~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..+|.+... .|+|+.+|+.|||+.+|+.+|..
T Consensus 30 a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~ 66 (120)
T 3jvl_A 30 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLES 66 (120)
T ss_dssp HGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHcc
Confidence 4677778776553 68999999999999999888863
No 68
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=46.27 E-value=9.1 Score=34.01 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 240 ~k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+-++||..+|. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 39 ~~s~~F~~pv~-~~~~PdY~~iIk~PMdL~tI~~kL~ 74 (130)
T 3k2j_A 39 LIAEPFYHLPS-KKKYPDYYQQIKMPISLQQIRTKLK 74 (130)
T ss_dssp BTTGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred CccHhhcCCCC-hhhCccHHHHcCCCCCHHHHHHHHh
Confidence 34567777665 4567899999999999999998886
No 69
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=45.87 E-value=27 Score=30.27 Aligned_cols=34 Identities=6% Similarity=-0.078 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
+.||..++. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 32 s~~F~~~~~-~~~~pdY~~iIk~PmdL~tI~~kl~ 65 (120)
T 3ljw_A 32 SELFQKLPS-KVQYPDYYAIIKEPIDLKTIAQRIQ 65 (120)
T ss_dssp TGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhcCCCC-cccCCChHHHcCCCCCHHHHHHHHc
Confidence 455655544 4567899999999999999988885
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.42 E-value=12 Score=41.16 Aligned_cols=10 Identities=40% Similarity=0.600 Sum_probs=5.1
Q ss_pred HHhhhhhHHH
Q 008721 431 MLKSRFADTI 440 (556)
Q Consensus 431 ~lk~rfadtI 440 (556)
+++.|=.|||
T Consensus 291 f~~~r~~d~~ 300 (575)
T 2i1j_A 291 YMRRRKPDTI 300 (575)
T ss_dssp HHHHTSCCCH
T ss_pred HHHccCCCcH
Confidence 3344555555
No 71
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=43.57 E-value=9.2 Score=34.11 Aligned_cols=33 Identities=3% Similarity=-0.022 Sum_probs=26.5
Q ss_pred CCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 243 PPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 243 ~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
+||..+|.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 39 ~~F~~Pv~~--~~pdY~~iIk~PmDL~tI~~kL~~ 71 (135)
T 2yyn_A 39 LAFQDPVPL--TVPDYYKIIKNPMDLSTIKKRLQE 71 (135)
T ss_dssp GGGSSCCCT--TSTTHHHHCSSCCCHHHHHHHHHS
T ss_pred hhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHhc
Confidence 455555543 579999999999999999999874
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.94 E-value=37 Score=37.62 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=4.2
Q ss_pred hHHHHHHhh
Q 008721 437 ADTILKAQQ 445 (556)
Q Consensus 437 adtIlKA~e 445 (556)
++|||.|-+
T Consensus 472 ~~~ilq~d~ 480 (592)
T 1f5n_A 472 TDAILQTDQ 480 (592)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHHH
Confidence 455554433
No 73
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=42.57 E-value=56 Score=37.71 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhh-hh-HHHHHHhh
Q 008721 424 KKALRAAMLKSR-FA-DTILKAQQ 445 (556)
Q Consensus 424 ~K~~Raa~lk~r-fa-dtIlKA~e 445 (556)
|...|.+|=|+= .| ...-|+||
T Consensus 647 Dqrtrd~LqkSVqlAiEItT~sqE 670 (861)
T 2zuo_A 647 DQRTRDALQRSVQLAIEITTNSQE 670 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHH
Confidence 677888888772 12 23345555
No 74
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=41.78 E-value=9.9 Score=32.82 Aligned_cols=35 Identities=0% Similarity=-0.090 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.+||..++. +...|+|+.+|+.|||+.+|+.+|..
T Consensus 29 s~~F~~p~~-~~~~pdY~~iI~~PmdL~tI~~kl~~ 63 (116)
T 3iu5_A 29 CELFIRAPK-RRNQPDYYEVVSQPIDLMKIQQKLKM 63 (116)
T ss_dssp GGGGSSCCC-GGGCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred eHHhcCCCC-cccCCCHHHHhCCCCCHHHHHHHHHc
Confidence 456666655 45678999999999999999888863
No 75
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=40.29 E-value=13 Score=35.30 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
++||..+|.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 99 s~~F~~Pv~~--~~pdY~~iIk~PmdL~tI~~kl~~ 132 (207)
T 3u5n_A 99 SIEFQEPVPA--SIPNYYKIIKKPMDLSTVKKKLQK 132 (207)
T ss_dssp CGGGSSCCCT--TSTTHHHHCSSCCCHHHHHHHHST
T ss_pred hhhhhccCCh--hhccHhHHhCCccCHHHHHHHHhc
Confidence 3456665543 578999999999999999999874
No 76
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=40.27 E-value=11 Score=33.18 Aligned_cols=36 Identities=8% Similarity=-0.064 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCccchhhhhhhhcccchhHHHhhhcc
Q 008721 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 241 k~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
-.+||..+|. +...|+|+.+|+.|||+.+|+.+|..
T Consensus 35 ~s~~F~~pv~-~~~~pdY~~iIk~PmdL~tI~~kl~~ 70 (129)
T 2grc_A 35 LSEVFIQLPS-RKELPEYYELIRKPVDFKKIKERIRN 70 (129)
T ss_dssp GGGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred eeHHhcCCCC-cccCCCHHHHcCCCCCHHHHHHHHhc
Confidence 3456666655 34579999999999999999988863
No 77
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.95 E-value=22 Score=39.16 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=5.4
Q ss_pred eeeeccccccc
Q 008721 13 LKIKFGSQRIE 23 (556)
Q Consensus 13 ~~~~~~~~~~~ 23 (556)
++|-|+..+++
T Consensus 7 v~V~llDgt~e 17 (575)
T 2i1j_A 7 VRVTTMDAELE 17 (575)
T ss_dssp EEEECSSCEEE
T ss_pred EEEEeCCCeEE
Confidence 45555544444
No 78
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=36.95 E-value=14 Score=32.23 Aligned_cols=34 Identities=3% Similarity=-0.137 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
++||..+|.. ...|+|+.+|+.|||+.+|+.+|.
T Consensus 39 s~~F~~pv~~-~~~pdY~~iI~~PmdL~tI~~kl~ 72 (124)
T 3mb4_A 39 SAIFLRLPSR-SELPDYYLTIKKPMDMEKIRSHMM 72 (124)
T ss_dssp GGGGSCCCCT-TTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhhcCCCc-cccCCHHHHcCCCCCHHHHHHHHH
Confidence 4566666553 457899999999999999998886
No 79
>4gdz_A Uncharacterized protein; PF14059 family protein, DUF4251, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacteroides eggerthii}
Probab=35.57 E-value=14 Score=34.87 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=19.1
Q ss_pred HHHHHHHHhhccccccccccchhHH
Q 008721 506 EAARVALQKVKPLMCIAFQHIDLVG 530 (556)
Q Consensus 506 e~~r~~~~~~~~tv~i~~~n~~~~~ 530 (556)
+.|++||+...=++|+| ++.|+.
T Consensus 36 ~~a~~Al~~~~FvlEad--~v~p~~ 58 (175)
T 4gdz_A 36 DDAVAALKAQQFVLEAN--QVMFRN 58 (175)
T ss_dssp HHHHHHHHHTEEEEEEE--EEECTT
T ss_pred HHHHHHHHhCceEEEee--EEEeCC
Confidence 46899999999999999 777654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.18 E-value=90 Score=32.65 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=5.7
Q ss_pred HHHHHHhhhhh
Q 008721 438 DTILKAQQRTL 448 (556)
Q Consensus 438 dtIlKA~ek~l 448 (556)
++|-++|++-|
T Consensus 331 e~L~~i~HrNL 341 (487)
T 3oja_A 331 ERENQARQREI 341 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhcccccch
Confidence 44555555544
No 81
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.52 E-value=15 Score=32.68 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=20.3
Q ss_pred chhhhhhhhcccchhHHHhhhc
Q 008721 255 KMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 255 ~~~~~k~l~~~~d~~~~~~~ls 276 (556)
.|+|+.+|+.|||+.+|+.+|.
T Consensus 37 ~pdY~~iIk~PmDL~tI~~kl~ 58 (131)
T 2dkw_A 37 VSDYLEVIKEPMDLSTVITKID 58 (131)
T ss_dssp CSSCTTSCSSCCCHHHHHHHHH
T ss_pred CccHHhHcCCCcCHHHHHHHHc
Confidence 6899999999999999998886
No 82
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=27.47 E-value=25 Score=31.67 Aligned_cols=34 Identities=15% Similarity=-0.060 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCccchhhhhhhhcccchhHHHhhhc
Q 008721 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (556)
Q Consensus 242 ~~p~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (556)
..||..++. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 49 ~~~F~~~~~-~~~~pdY~~iIk~PmdL~tI~~kl~ 82 (150)
T 3tlp_A 49 CDLFMVKPS-KKDYPDYYKIILEPMDLKIIEHNIR 82 (150)
T ss_dssp GGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhcCCCc-hhhCcCHHHHhCCCCCHHHHHHHHh
Confidence 344544444 3457899999999999999998886
No 83
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=26.27 E-value=1e+02 Score=30.63 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008721 474 EKARIEAQIKAAEAASRMKA 493 (556)
Q Consensus 474 e~ar~~a~~~a~e~a~~~~~ 493 (556)
++-|+|++.+.+|+.++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (323)
T 1ij5_A 38 DRDRLEAQIAQKEQEQKAKL 57 (323)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566766666666665544
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.26 E-value=19 Score=33.35 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=21.1
Q ss_pred chhhhhhhhcccchhHHHhhhcc
Q 008721 255 KMSEEKAARSSYCARAVEVERAK 277 (556)
Q Consensus 255 ~~~~~k~l~~~~d~~~~~~~lsk 277 (556)
.|+|+.+|+.|||+.+|+.+|..
T Consensus 110 ~pdY~~iIk~PmdL~tI~~kl~~ 132 (184)
T 3o36_A 110 VPDYYKIIKNPMDLSTIKKRLQE 132 (184)
T ss_dssp STTHHHHCSSCCCHHHHHHHHHS
T ss_pred CCchhhhcCCCCCHHHHHHHHHh
Confidence 68999999999999999999874
No 85
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=22.22 E-value=83 Score=34.36 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=12.0
Q ss_pred ChhhhHHHHHHHHHHHHH
Q 008721 456 DPVKLQQEKERLEQRQRE 473 (556)
Q Consensus 456 dp~~~~~e~~~~e~~~~e 473 (556)
|.-|||||-|-.-|..||
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (536)
T 3err_A 3 DLKRLRQEPEVFHRAIRE 20 (536)
T ss_dssp CHHHHHSCHHHHHHHHHH
T ss_pred chHhhhcChHHHHHHHHH
Confidence 556777777766666555
No 86
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=20.36 E-value=60 Score=25.43 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008721 500 QREKEREAARVALQKVK 516 (556)
Q Consensus 500 ~~~~~~e~~r~~~~~~~ 516 (556)
+++.|..||+.+|+.|.
T Consensus 56 KK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 56 RKAAEQSAAEVALRELA 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555554
Done!