BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008722
         (556 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
           Methylesterase And Its Inhibitor Protein
          Length = 317

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/306 (74%), Positives = 255/306 (83%)

Query: 251 DGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITG 310
           DG+G+Y+T+ EAVA+APD SKTRYVIYVK+GTY            LMIVGDGM  T ITG
Sbjct: 10  DGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITG 69

Query: 311 SLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDA 370
           SLNVVDGSTTF+SAT+A  G GFI QD+ IQNTAGP K QAVALRV AD SVINRCRIDA
Sbjct: 70  SLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDA 129

Query: 371 YQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDP 430
           YQDTLYAH+ RQFYRD Y+TGTVDFIFGNAAVV Q C++ ARKP   Q NMVTAQGRTDP
Sbjct: 130 YQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDP 189

Query: 431 NQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWS 490
           NQ TGTSIQ C++IASSDLEPV     +YLGRPWKEYSRTVVM+S++G  I+PAGW+EW 
Sbjct: 190 NQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWD 249

Query: 491 GDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGV 550
           GDFALKTLYYGE++N GPGAGTSKRVKWPGYHVITDP +A  FTVA+LI GGSWL+STGV
Sbjct: 250 GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGV 309

Query: 551 AYTEGL 556
           AY +GL
Sbjct: 310 AYVDGL 315


>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
          Length = 319

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/306 (62%), Positives = 224/306 (73%)

Query: 251 DGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITG 310
           DGSG+YKTV EAVA+AP++SKTRYVI +K G Y            +M +GDG   TIIT 
Sbjct: 14  DGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITA 73

Query: 311 SLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDA 370
           S NV DGSTTF SAT+A  G GF+A+D+  QNTAG  KHQAVALRV +D S   RC I A
Sbjct: 74  SKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILA 133

Query: 371 YQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDP 430
           YQD+LY H+NRQF+ +C+I GTVDFIFGNAAVVLQ+C I AR+P S Q NMVTAQGRTDP
Sbjct: 134 YQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDP 193

Query: 431 NQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWS 490
           NQNTG  IQK  + A+SDL+PV+ S  +YLGRPWKEYSRTVVMQS I + I+PAGW  W 
Sbjct: 194 NQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWD 253

Query: 491 GDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGV 550
           G+FAL TLYYGEY N G GA TS RV W G+ VIT   EA+ FT    I GGSWLK+T  
Sbjct: 254 GNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTF 313

Query: 551 AYTEGL 556
            ++ GL
Sbjct: 314 PFSLGL 319


>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
 pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
          Length = 342

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 151/333 (45%), Gaps = 63/333 (18%)

Query: 256 YKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVV 315
           +KT+ +A+ASAP  S T +VI +K G Y            L + G+  +  +I  +    
Sbjct: 18  FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74

Query: 316 ----DGST--TFKSATIAVGGDGFIAQDLWIQN--------------TAGPEKHQAVALR 355
               DGS   T  S+TI +    F AQ L I+N              ++  +  QAVAL 
Sbjct: 75  TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134

Query: 356 V--SADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARK 413
           V  S D++      +  YQDTLY    R F+ DC I+GTVDFIFG+   +  NC + +R 
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194

Query: 414 PMSKQSNMVTA---QGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSY-LGRPWKEYS- 468
               +S  V+       T+ NQ  G  I    VI  SD  P K    SY LGRPW   + 
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTT 250

Query: 469 -------------RTVVMQSHIGDHIDPAGWSEWSG-DFALKTLYYG-------EYLNRG 507
                        +TV + + + +HI   GW + SG D    T+++        EY + G
Sbjct: 251 FSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308

Query: 508 PGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 540
            GA  SK  +      +TD + A ++T ++++G
Sbjct: 309 AGAAVSKDRR-----QLTDAQAA-EYTQSKVLG 335


>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide V
 pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide V
 pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide Vi
 pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide Vi
 pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide Vii
 pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
           Hexasaccharide Vii
          Length = 342

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 151/333 (45%), Gaps = 63/333 (18%)

Query: 256 YKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVV 315
           +KT+ +A+ASAP  S T +VI +K G Y            L + G+  +  +I  +    
Sbjct: 18  FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74

Query: 316 ----DGST--TFKSATIAVGGDGFIAQDLWIQN--------------TAGPEKHQAVALR 355
               DGS   T  S+TI +    F AQ L I+N              ++  +  QAVAL 
Sbjct: 75  TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134

Query: 356 V--SADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARK 413
           V  S D++      +  YQDTLY    R F+ DC I+GTVDFIFG+   +  NC + +R 
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194

Query: 414 PMSKQSNMVTA---QGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSY-LGRPWKEYS- 468
               +S  V+       T+ NQ  G  I    VI  SD  P K    SY LGRPW   + 
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTT 250

Query: 469 -------------RTVVMQSHIGDHIDPAGWSEWSG-DFALKTLYYG-------EYLNRG 507
                        +TV + + + +HI   GW + SG D    T+++        EY + G
Sbjct: 251 FSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308

Query: 508 PGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 540
            GA  SK  +      +TD + A ++T ++++G
Sbjct: 309 AGATVSKDRR-----QLTDAQAA-EYTQSKVLG 335


>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide I
 pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide I
 pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Ii
 pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Ii
 pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Iii
 pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Iii
 pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Iv
 pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
           Complex With Hexasaccharide Iv
          Length = 342

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 150/333 (45%), Gaps = 63/333 (18%)

Query: 256 YKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITGSLNVV 315
           +KT+ +A+ASAP  S T +VI +K G Y            L + G+  +  +I  +    
Sbjct: 18  FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74

Query: 316 ----DGST--TFKSATIAVGGDGFIAQDLWIQN--------------TAGPEKHQAVALR 355
               DGS   T  S+TI +    F AQ L I+N              ++  +  QAVAL 
Sbjct: 75  TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134

Query: 356 V--SADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARK 413
           V  S D++      +  YQ TLY    R F+ DC I+GTVDFIFG+   +  NC + +R 
Sbjct: 135 VTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194

Query: 414 PMSKQSNMVTA---QGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSY-LGRPWKEYS- 468
               +S  V+       T+ NQ  G  I    VI  SD  P K    SY LGRPW   + 
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTT 250

Query: 469 -------------RTVVMQSHIGDHIDPAGWSEWSG-DFALKTLYYG-------EYLNRG 507
                        +TV + + + +HI   GW + SG D    T+++        EY + G
Sbjct: 251 FSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308

Query: 508 PGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 540
            GA  SK  +      +TD + A ++T ++++G
Sbjct: 309 AGATVSKDRR-----QLTDAQAA-EYTQSKVLG 335


>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
          Length = 364

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 55/301 (18%)

Query: 256 YKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTII-----TG 310
           + ++  A+ SAP +  T ++I++K G Y            L   G+  D T+I      G
Sbjct: 44  FSSINAALKSAPKDD-TPFIIFLKNGVYTERLEVARSHVTLK--GENRDGTVIGANTAAG 100

Query: 311 SLNVV-DGSTTFKSATIAVGGDGFIAQDLWIQNT-----------AGPEK---HQAVALR 355
            LN   +   T  S+T+ V    F A++L I+N              P K    QAVAL 
Sbjct: 101 MLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALL 160

Query: 356 VS--ADQSVINRCRIDAYQDTLYAHT-NRQFYRDCYITGTVDFIFGNAAVVLQNCKIAAR 412
           ++  +D++     +++ YQDTLY+ T +R ++ DC I+G VDFIFG+   V  NC I AR
Sbjct: 161 LAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVAR 220

Query: 413 KPMSKQSNMVTAQGR-TDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYS--- 468
                +S++    G  T P+  T +      + +    EP   +    LGRPW   +   
Sbjct: 221 ----DRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTFA 276

Query: 469 -----------RTVVMQSHIGDHIDPAGWSEWSGD--------FALKTLYYGEYLNRGPG 509
                      ++V + + + DHI   GW + SG         F  +   + E  ++GPG
Sbjct: 277 DGRYADPAAIGQSVFINTTMDDHI--YGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPG 334

Query: 510 A 510
           A
Sbjct: 335 A 335


>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
          Length = 422

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 16/110 (14%)

Query: 331 DGFIAQDLWIQNTAGPE----KHQAVALRVSADQSVINRCRIDAYQDTLYA--------- 377
           +G   Q+L I+NT G       H AVALR   DQ  IN   I   Q+T +          
Sbjct: 201 NGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRL 260

Query: 378 HTNRQ---FYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTA 424
            TNRQ      + YI G VD + G  AVV  N +       ++Q   V A
Sbjct: 261 ETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFA 310


>pdb|3OQB|A Chain A, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|B Chain B, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|C Chain C, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|D Chain D, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|E Chain E, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|F Chain F, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|G Chain G, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
 pdb|3OQB|H Chain H, Crystal Structure Of Putative Oxidoreductase From
           Bradyrhizobium Japonicum Usda 110
          Length = 383

 Score = 32.0 bits (71), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 340 IQNTAGPEK--HQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQF----YRDCYITGTV 393
           I NT  PE+   Q    + +AD S     +++     + AH N  +    YRD  +T  V
Sbjct: 223 IGNTDIPERFDEQGKKYKATADDSAYATFQLEG---GVIAHINXSWVTRVYRDDLVTFQV 279

Query: 394 DFIFGNAAVVLQNCKIAARKPMSK 417
           D   G+A   L +C I AR+   +
Sbjct: 280 DGTHGSAVAGLSDCXIQARQATPR 303


>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
           Arthrobacter Globiformis In Complex With Acetate
 pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
           Arthrobacter Globiformis In Complex With Folic Acid
 pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
           Globiformis In Complex With Folinic Acid
          Length = 830

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 331 DGF-IAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDT-----LYAHTNRQFY 384
           DGF +A+ +W+ ++AG  K  A  L     ++ +  C I  ++D        + T++Q +
Sbjct: 352 DGFYVAEAVWVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNF 411

Query: 385 RDCY 388
            + Y
Sbjct: 412 VEIY 415


>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
           Of Arthrobacter Globiformis In Complex With
           Tetrahydrofolate
          Length = 827

 Score = 28.9 bits (63), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 331 DGF-IAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDT-----LYAHTNRQFY 384
           DGF +A+ +W+ ++AG  K  A  L     ++ +  C I  ++D        + T++Q +
Sbjct: 349 DGFYVAEAVWVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNF 408

Query: 385 RDCY 388
            + Y
Sbjct: 409 VEIY 412


>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
           I223r Neuraminidase Mutant Explained By Kinetic And
           Structural Analysis
 pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
           I223r Neuraminidase Mutant Explained By Kinetic And
           Structural Analysis
 pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
           I223r Neuraminidase Mutant Explained By Kinetic And
           Structural Analysis
 pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
           I223r Neuraminidase Mutant Explained By Kinetic And
           Structural Analysis
          Length = 469

 Score = 28.5 bits (62), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 430 PNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEW 489
           PN  TG+    C  ++S+    VKG    Y    W   ++++  ++      DP GW+  
Sbjct: 328 PNDKTGS----CGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRNGFEMIWDPNGWTGT 383

Query: 490 SGDFALK 496
             DF++K
Sbjct: 384 DNDFSIK 390


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,915,639
Number of Sequences: 62578
Number of extensions: 572188
Number of successful extensions: 1100
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 19
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)