Query 008723
Match_columns 556
No_of_seqs 362 out of 2991
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 2E-55 4.2E-60 456.9 25.7 297 260-556 132-464 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 3.5E-49 7.5E-54 398.1 19.9 277 259-556 47-323 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 5.3E-38 1.1E-42 336.5 23.9 275 261-555 59-333 (412)
4 TIGR00382 clpX endopeptidase C 100.0 3.9E-37 8.4E-42 328.7 23.2 275 261-555 65-339 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 1.3E-30 2.8E-35 276.3 16.7 218 263-555 2-354 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 3.9E-30 8.5E-35 272.8 16.5 220 262-556 4-357 (443)
7 COG1220 HslU ATP-dependent pro 99.9 9.6E-27 2.1E-31 237.2 15.6 219 262-555 4-357 (444)
8 KOG0738 AAA+-type ATPase [Post 99.9 1.6E-24 3.5E-29 224.3 22.8 169 275-489 214-386 (491)
9 COG0542 clpA ATP-binding subun 99.9 1.1E-24 2.3E-29 245.2 17.4 231 249-554 463-712 (786)
10 COG1222 RPT1 ATP-dependent 26S 99.9 1.3E-23 2.7E-28 216.5 12.7 173 271-490 150-327 (406)
11 KOG0730 AAA+-type ATPase [Post 99.9 1E-22 2.3E-27 222.4 12.4 170 275-490 436-607 (693)
12 KOG0736 Peroxisome assembly fa 99.9 2.3E-22 5.1E-27 221.7 14.4 216 271-546 671-891 (953)
13 PRK11034 clpA ATP-dependent Cl 99.9 1.3E-21 2.9E-26 223.5 17.6 228 249-554 430-673 (758)
14 COG1223 Predicted ATPase (AAA+ 99.9 3.6E-22 7.7E-27 198.1 10.1 171 270-490 119-289 (368)
15 KOG0733 Nuclear AAA ATPase (VC 99.9 1.2E-21 2.5E-26 211.9 14.4 169 275-489 513-683 (802)
16 KOG0739 AAA+-type ATPase [Post 99.9 1.8E-21 4E-26 196.0 13.6 166 275-488 135-302 (439)
17 KOG0734 AAA+-type ATPase conta 99.9 6.1E-21 1.3E-25 203.7 15.3 218 263-543 294-514 (752)
18 CHL00095 clpC Clp protease ATP 99.9 1.3E-20 2.8E-25 218.7 18.8 240 249-554 481-739 (821)
19 TIGR02639 ClpA ATP-dependent C 99.8 1E-20 2.2E-25 217.1 17.5 228 249-554 426-669 (731)
20 KOG0733 Nuclear AAA ATPase (VC 99.8 2E-20 4.3E-25 202.5 11.3 176 270-489 188-365 (802)
21 TIGR03345 VI_ClpV1 type VI sec 99.8 1.4E-19 3E-24 210.1 17.5 230 249-554 538-787 (852)
22 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-18 2.4E-23 179.7 19.3 195 262-552 12-214 (287)
23 KOG0731 AAA+-type ATPase conta 99.8 1.4E-19 3.1E-24 202.8 13.5 175 270-489 309-486 (774)
24 PF07724 AAA_2: AAA domain (Cd 99.8 4.9E-20 1.1E-24 176.1 8.1 166 324-528 2-171 (171)
25 TIGR02880 cbbX_cfxQ probable R 99.8 1.3E-18 2.9E-23 178.8 18.3 196 261-552 10-213 (284)
26 KOG0727 26S proteasome regulat 99.8 4E-19 8.6E-24 175.8 11.1 170 275-490 157-331 (408)
27 PF05496 RuvB_N: Holliday junc 99.8 1.2E-18 2.6E-23 171.8 14.4 170 270-547 22-192 (233)
28 TIGR03346 chaperone_ClpB ATP-d 99.8 3E-18 6.6E-23 199.6 20.0 227 249-553 537-782 (852)
29 TIGR02881 spore_V_K stage V sp 99.8 1.2E-17 2.6E-22 169.3 19.1 185 268-549 2-193 (261)
30 KOG0735 AAA+-type ATPase [Post 99.8 3E-18 6.4E-23 188.1 14.1 167 275-489 669-839 (952)
31 KOG1051 Chaperone HSP104 and r 99.8 9.9E-18 2.2E-22 191.5 18.8 239 248-554 533-791 (898)
32 PRK10865 protein disaggregatio 99.8 8.1E-18 1.8E-22 195.8 17.6 226 249-552 540-784 (857)
33 COG0464 SpoVK ATPases of the A 99.8 6.9E-18 1.5E-22 185.7 16.1 170 275-490 244-415 (494)
34 KOG0728 26S proteasome regulat 99.8 4.3E-18 9.3E-23 168.4 12.5 176 271-489 145-322 (404)
35 COG0465 HflB ATP-dependent Zn 99.8 3E-18 6.4E-23 189.2 12.5 177 268-489 146-324 (596)
36 TIGR01243 CDC48 AAA family ATP 99.7 1.9E-17 4.2E-22 190.3 16.9 174 271-490 452-627 (733)
37 TIGR03689 pup_AAA proteasome A 99.7 3.5E-17 7.7E-22 179.5 16.7 179 270-490 180-370 (512)
38 KOG0726 26S proteasome regulat 99.7 3.2E-18 7E-23 172.2 7.6 180 268-492 181-363 (440)
39 CHL00195 ycf46 Ycf46; Provisio 99.7 4.2E-17 9.2E-22 178.7 16.8 166 275-490 230-397 (489)
40 PTZ00454 26S protease regulato 99.7 4.6E-17 1E-21 174.6 16.5 177 270-490 143-321 (398)
41 TIGR01241 FtsH_fam ATP-depende 99.7 9.7E-17 2.1E-21 176.8 18.1 176 269-489 52-229 (495)
42 PLN00020 ribulose bisphosphate 99.7 3.7E-17 8.1E-22 171.1 13.9 152 324-489 147-302 (413)
43 KOG0737 AAA+-type ATPase [Post 99.7 7.7E-17 1.7E-21 167.2 13.9 234 259-553 79-314 (386)
44 PRK03992 proteasome-activating 99.7 1.4E-16 3.1E-21 170.5 16.2 173 275-490 133-307 (389)
45 KOG0729 26S proteasome regulat 99.7 3.6E-17 7.7E-22 163.1 9.6 174 275-491 179-354 (435)
46 COG0466 Lon ATP-dependent Lon 99.7 1.9E-16 4E-21 175.2 15.8 167 251-466 303-477 (782)
47 COG2255 RuvB Holliday junction 99.7 2.9E-16 6.4E-21 158.2 15.8 176 269-551 23-198 (332)
48 COG2256 MGS1 ATPase related to 99.7 2E-16 4.4E-21 165.7 13.6 129 326-548 49-177 (436)
49 CHL00176 ftsH cell division pr 99.7 2.5E-16 5.5E-21 177.5 15.4 176 270-490 181-358 (638)
50 PTZ00361 26 proteosome regulat 99.7 2.7E-16 5.8E-21 170.2 14.4 177 270-490 181-359 (438)
51 TIGR00763 lon ATP-dependent pr 99.7 9E-16 2E-20 177.5 18.6 190 261-547 308-505 (775)
52 KOG0652 26S proteasome regulat 99.7 1.4E-16 3.1E-21 158.4 9.9 172 275-489 173-346 (424)
53 KOG2004 Mitochondrial ATP-depe 99.7 1.6E-15 3.6E-20 167.1 17.9 222 250-544 390-623 (906)
54 KOG0740 AAA+-type ATPase [Post 99.6 6.4E-16 1.4E-20 164.9 11.5 171 274-490 154-325 (428)
55 PRK10787 DNA-binding ATP-depen 99.6 4.7E-15 1E-19 171.0 19.3 199 250-548 301-507 (784)
56 PF00158 Sigma54_activat: Sigm 99.6 1.2E-15 2.6E-20 145.5 9.9 146 306-485 3-163 (168)
57 COG2204 AtoC Response regulato 99.6 9.3E-16 2E-20 165.7 9.6 159 302-487 141-307 (464)
58 PRK10733 hflB ATP-dependent me 99.6 6.1E-15 1.3E-19 167.3 16.6 183 263-490 143-327 (644)
59 TIGR01242 26Sp45 26S proteasom 99.6 5.7E-15 1.2E-19 156.7 15.4 169 275-489 124-297 (364)
60 COG3604 FhlA Transcriptional r 99.6 6.2E-16 1.3E-20 165.6 7.0 156 304-486 225-388 (550)
61 COG3829 RocR Transcriptional r 99.6 1.3E-15 2.8E-20 165.0 8.3 159 301-486 244-411 (560)
62 PF00004 AAA: ATPase family as 99.5 2.4E-14 5.2E-19 127.8 10.0 130 328-483 1-131 (132)
63 TIGR01243 CDC48 AAA family ATP 99.5 7.5E-14 1.6E-18 160.8 15.6 173 270-489 176-350 (733)
64 KOG0741 AAA+-type ATPase [Post 99.5 1.1E-14 2.3E-19 156.2 8.0 142 326-489 257-405 (744)
65 KOG0732 AAA+-type ATPase conta 99.5 2E-14 4.3E-19 165.7 10.4 173 269-489 262-442 (1080)
66 PF01078 Mg_chelatase: Magnesi 99.5 2.4E-14 5.2E-19 140.1 8.8 180 275-538 5-206 (206)
67 CHL00206 ycf2 Ycf2; Provisiona 99.5 6.4E-14 1.4E-18 167.8 13.8 138 322-489 1627-1808(2281)
68 PRK00080 ruvB Holliday junctio 99.5 2.8E-13 6.1E-18 141.8 16.9 107 270-431 23-129 (328)
69 KOG0651 26S proteasome regulat 99.5 3.1E-14 6.7E-19 144.9 9.1 172 275-489 134-307 (388)
70 TIGR00635 ruvB Holliday juncti 99.5 2.9E-13 6.2E-18 139.6 16.3 107 270-431 2-108 (305)
71 TIGR02640 gas_vesic_GvpN gas v 99.5 9.3E-14 2E-18 141.3 11.3 123 324-465 20-161 (262)
72 KOG0744 AAA+-type ATPase [Post 99.5 3E-13 6.4E-18 138.4 14.5 186 263-488 133-330 (423)
73 PRK07003 DNA polymerase III su 99.5 1.7E-13 3.6E-18 154.6 13.7 108 270-430 14-145 (830)
74 TIGR02974 phageshock_pspF psp 99.5 2.7E-13 5.9E-18 142.3 13.7 145 306-484 3-162 (329)
75 TIGR02639 ClpA ATP-dependent C 99.5 2.3E-13 5E-18 156.7 13.9 119 269-429 179-308 (731)
76 PRK12323 DNA polymerase III su 99.5 2.4E-13 5.2E-18 151.6 13.0 108 270-430 14-150 (700)
77 PRK14956 DNA polymerase III su 99.5 7.6E-13 1.6E-17 144.1 15.1 108 270-430 16-147 (484)
78 PRK13342 recombination factor 99.5 7.8E-13 1.7E-17 142.9 15.0 81 326-429 37-117 (413)
79 PLN03025 replication factor C 99.4 9.8E-13 2.1E-17 137.3 14.3 110 262-429 7-124 (319)
80 COG0714 MoxR-like ATPases [Gen 99.4 9.1E-13 2E-17 138.1 13.4 168 263-486 14-192 (329)
81 KOG2028 ATPase related to the 99.4 5.2E-13 1.1E-17 138.3 11.1 133 326-552 163-299 (554)
82 KOG0730 AAA+-type ATPase [Post 99.4 4.7E-13 1E-17 147.4 10.6 169 274-489 185-355 (693)
83 PRK14958 DNA polymerase III su 99.4 1.3E-12 2.7E-17 144.6 13.8 108 270-430 14-145 (509)
84 PRK14962 DNA polymerase III su 99.4 1.3E-12 2.9E-17 143.1 13.7 107 270-429 12-142 (472)
85 PRK14949 DNA polymerase III su 99.4 2E-12 4.3E-17 148.4 15.2 115 270-429 14-144 (944)
86 KOG0742 AAA+-type ATPase [Post 99.4 1.7E-12 3.8E-17 136.0 13.1 180 325-539 384-565 (630)
87 PRK14960 DNA polymerase III su 99.4 1.6E-12 3.4E-17 145.5 13.5 107 270-429 13-143 (702)
88 PRK07994 DNA polymerase III su 99.4 2.3E-12 4.9E-17 145.2 14.9 108 270-430 14-145 (647)
89 PRK11608 pspF phage shock prot 99.4 3.4E-12 7.4E-17 133.9 14.2 143 308-484 12-169 (326)
90 PRK07764 DNA polymerase III su 99.4 2.6E-12 5.6E-17 148.7 14.6 108 270-430 13-146 (824)
91 PRK13531 regulatory ATPase Rav 99.4 3.4E-12 7.4E-17 138.8 14.4 123 264-435 11-138 (498)
92 KOG0989 Replication factor C, 99.4 3.4E-12 7.4E-17 130.2 13.2 115 268-429 32-154 (346)
93 TIGR02902 spore_lonB ATP-depen 99.4 3.7E-12 8E-17 141.7 14.8 119 271-435 64-206 (531)
94 COG1221 PspF Transcriptional r 99.4 1.2E-12 2.5E-17 139.6 9.8 142 305-473 81-231 (403)
95 TIGR01817 nifA Nif-specific re 99.4 3.7E-12 8.1E-17 141.8 14.0 147 304-484 198-359 (534)
96 TIGR01650 PD_CobS cobaltochela 99.4 1.5E-12 3.2E-17 135.8 10.0 118 326-466 65-189 (327)
97 PRK14961 DNA polymerase III su 99.4 9.3E-12 2E-16 132.4 15.8 115 270-429 14-144 (363)
98 PRK07940 DNA polymerase III su 99.4 7E-12 1.5E-16 134.6 14.5 158 271-489 4-180 (394)
99 PRK15424 propionate catabolism 99.4 5.4E-12 1.2E-16 140.1 13.9 155 304-485 221-392 (538)
100 PRK14959 DNA polymerase III su 99.4 6.3E-12 1.4E-16 140.7 14.2 107 270-429 14-144 (624)
101 PRK06645 DNA polymerase III su 99.4 9.7E-12 2.1E-16 137.2 15.5 107 270-429 19-153 (507)
102 PRK14952 DNA polymerase III su 99.4 9.3E-12 2E-16 139.3 15.4 106 270-429 11-143 (584)
103 PRK14951 DNA polymerase III su 99.3 6.3E-12 1.4E-16 141.3 13.7 107 270-429 14-149 (618)
104 PRK14964 DNA polymerase III su 99.3 1E-11 2.2E-16 136.3 14.7 108 270-430 11-142 (491)
105 PRK14957 DNA polymerase III su 99.3 9.3E-12 2E-16 138.3 14.5 108 270-430 14-145 (546)
106 PF07726 AAA_3: ATPase family 99.3 2.9E-13 6.3E-18 123.0 1.9 111 327-465 1-113 (131)
107 TIGR03345 VI_ClpV1 type VI sec 99.3 8.1E-12 1.8E-16 145.7 14.2 172 269-550 184-366 (852)
108 PRK08691 DNA polymerase III su 99.3 9.7E-12 2.1E-16 140.1 13.4 114 270-429 14-144 (709)
109 TIGR02329 propionate_PrpR prop 99.3 1.4E-11 3E-16 136.8 14.0 155 304-485 214-377 (526)
110 PRK13341 recombination factor 99.3 2E-11 4.2E-16 139.9 15.2 81 326-429 53-134 (725)
111 KOG0991 Replication factor C, 99.3 9.5E-12 2.1E-16 122.7 10.8 113 262-429 21-138 (333)
112 PRK13407 bchI magnesium chelat 99.3 1.4E-11 3.1E-16 129.5 12.5 137 275-464 10-180 (334)
113 PRK11388 DNA-binding transcrip 99.3 8.2E-12 1.8E-16 141.8 11.2 149 304-486 327-487 (638)
114 PRK14969 DNA polymerase III su 99.3 1.6E-11 3.4E-16 136.5 13.2 108 270-430 14-145 (527)
115 PRK05022 anaerobic nitric oxid 99.3 1E-11 2.2E-16 137.6 11.5 150 303-486 188-352 (509)
116 CHL00081 chlI Mg-protoporyphyr 99.3 2.1E-11 4.5E-16 128.8 13.1 115 275-435 19-175 (350)
117 PF07728 AAA_5: AAA domain (dy 99.3 7.4E-13 1.6E-17 120.9 1.9 122 327-466 1-125 (139)
118 TIGR00368 Mg chelatase-related 99.3 1.6E-11 3.4E-16 135.5 12.3 186 270-540 190-397 (499)
119 PRK05563 DNA polymerase III su 99.3 5.1E-11 1.1E-15 133.4 15.7 107 270-429 14-144 (559)
120 PRK10820 DNA-binding transcrip 99.3 4E-11 8.7E-16 133.3 14.7 149 303-485 205-368 (520)
121 PRK14963 DNA polymerase III su 99.3 6.9E-11 1.5E-15 130.7 16.2 107 270-429 12-141 (504)
122 PRK11034 clpA ATP-dependent Cl 99.3 2.9E-11 6.3E-16 139.1 13.2 168 271-548 185-363 (758)
123 PRK14965 DNA polymerase III su 99.3 3.8E-11 8.2E-16 134.9 13.7 107 270-429 14-144 (576)
124 PRK10865 protein disaggregatio 99.3 3.8E-11 8.1E-16 140.4 13.9 119 269-429 175-304 (857)
125 CHL00095 clpC Clp protease ATP 99.3 4.2E-11 9.2E-16 139.7 14.2 116 271-429 178-304 (821)
126 PRK14955 DNA polymerase III su 99.2 4.4E-11 9.6E-16 128.7 12.9 114 271-429 15-152 (397)
127 PRK15429 formate hydrogenlyase 99.2 2.4E-11 5.1E-16 139.3 10.9 155 303-484 377-539 (686)
128 PRK09111 DNA polymerase III su 99.2 9.5E-11 2.1E-15 131.8 15.4 121 257-429 13-157 (598)
129 PHA02244 ATPase-like protein 99.2 2.3E-11 4.9E-16 128.5 9.7 149 306-486 100-262 (383)
130 TIGR02030 BchI-ChlI magnesium 99.2 5.4E-11 1.2E-15 125.3 12.3 110 275-432 6-159 (337)
131 PRK04195 replication factor C 99.2 1.9E-10 4E-15 126.8 16.6 118 262-429 8-127 (482)
132 PRK07133 DNA polymerase III su 99.2 1E-10 2.2E-15 132.9 14.7 116 270-430 16-144 (725)
133 TIGR02442 Cob-chelat-sub cobal 99.2 6.2E-11 1.3E-15 134.6 12.8 136 275-464 6-178 (633)
134 PRK14948 DNA polymerase III su 99.2 1.4E-10 3E-15 131.1 15.3 114 270-429 14-146 (620)
135 PRK05896 DNA polymerase III su 99.2 1.3E-10 2.9E-15 129.7 14.9 107 270-429 14-144 (605)
136 COG2812 DnaX DNA polymerase II 99.2 5.4E-11 1.2E-15 130.6 11.3 141 270-476 14-171 (515)
137 TIGR02397 dnaX_nterm DNA polym 99.2 2E-10 4.4E-15 120.5 15.2 107 270-429 12-142 (355)
138 TIGR03346 chaperone_ClpB ATP-d 99.2 9.7E-11 2.1E-15 137.1 13.9 100 270-405 171-281 (852)
139 COG3283 TyrR Transcriptional r 99.2 1.8E-11 3.8E-16 127.0 6.7 148 305-486 207-364 (511)
140 PRK06305 DNA polymerase III su 99.2 1.6E-10 3.5E-15 126.3 14.6 107 270-429 15-146 (451)
141 PHA02544 44 clamp loader, smal 99.2 3E-10 6.4E-15 117.8 15.7 113 261-429 14-126 (316)
142 PRK12402 replication factor C 99.2 2.7E-10 5.8E-15 118.5 15.2 114 270-429 13-150 (337)
143 COG0606 Predicted ATPase with 99.2 2.8E-11 6.1E-16 130.1 7.5 180 275-540 181-385 (490)
144 TIGR02903 spore_lon_C ATP-depe 99.2 2.6E-10 5.7E-15 129.0 15.4 95 325-433 175-294 (615)
145 smart00350 MCM minichromosome 99.2 1.7E-10 3.6E-15 128.0 13.1 198 266-545 196-398 (509)
146 PRK08451 DNA polymerase III su 99.2 4E-10 8.7E-15 124.9 15.9 107 270-429 12-142 (535)
147 PRK14950 DNA polymerase III su 99.2 3.1E-10 6.7E-15 127.9 15.0 112 270-429 14-145 (585)
148 PRK06647 DNA polymerase III su 99.2 2.5E-10 5.4E-15 127.8 14.1 106 271-429 15-144 (563)
149 PRK14954 DNA polymerase III su 99.2 3.2E-10 6.9E-15 127.9 14.9 114 271-429 15-152 (620)
150 PRK10923 glnG nitrogen regulat 99.2 2.9E-10 6.3E-15 124.2 13.6 147 304-484 140-301 (469)
151 PRK14953 DNA polymerase III su 99.2 3.5E-10 7.6E-15 124.7 14.2 107 270-429 14-144 (486)
152 PRK14970 DNA polymerase III su 99.1 6.8E-10 1.5E-14 117.9 15.9 112 270-429 15-133 (367)
153 PRK15115 response regulator Gl 99.1 5.1E-10 1.1E-14 121.4 14.3 147 305-485 137-298 (444)
154 TIGR02915 PEP_resp_reg putativ 99.1 7.5E-10 1.6E-14 120.1 15.1 146 304-483 141-301 (445)
155 PRK00440 rfc replication facto 99.1 1.4E-09 3.1E-14 112.1 15.2 108 270-429 15-127 (319)
156 PRK14971 DNA polymerase III su 99.1 1.1E-09 2.3E-14 124.0 15.2 107 270-429 15-146 (614)
157 KOG0743 AAA+-type ATPase [Post 99.1 1.1E-09 2.3E-14 117.3 13.8 175 325-545 235-415 (457)
158 PF14532 Sigma54_activ_2: Sigm 99.1 5.2E-11 1.1E-15 109.4 3.3 122 306-482 2-126 (138)
159 TIGR01818 ntrC nitrogen regula 99.1 1.9E-09 4.1E-14 117.4 14.4 145 304-482 136-295 (463)
160 PRK11361 acetoacetate metaboli 99.0 1.1E-09 2.3E-14 119.1 11.7 147 304-484 145-306 (457)
161 PRK07471 DNA polymerase III su 99.0 2.9E-09 6.2E-14 113.6 14.7 119 262-429 13-166 (365)
162 PRK09112 DNA polymerase III su 99.0 4E-09 8.6E-14 111.9 15.7 120 262-430 17-167 (351)
163 PF05673 DUF815: Protein of un 99.0 5E-09 1.1E-13 105.1 15.1 179 271-548 26-208 (249)
164 cd00009 AAA The AAA+ (ATPases 99.0 5.2E-09 1.1E-13 93.0 13.8 87 325-429 19-109 (151)
165 COG3284 AcoR Transcriptional a 99.0 1.7E-10 3.6E-15 127.4 4.1 154 306-486 317-477 (606)
166 PTZ00111 DNA replication licen 99.0 2.3E-09 5E-14 123.8 13.4 158 267-465 444-610 (915)
167 KOG2170 ATPase of the AAA+ sup 99.0 5.4E-09 1.2E-13 106.8 13.8 215 261-548 70-301 (344)
168 TIGR02928 orc1/cdc6 family rep 99.0 4.5E-09 9.7E-14 110.9 13.7 60 275-361 17-85 (365)
169 PRK09862 putative ATP-dependen 99.0 1.2E-09 2.6E-14 120.5 9.6 163 325-540 210-394 (506)
170 PRK07399 DNA polymerase III su 99.0 6.9E-09 1.5E-13 108.5 14.6 115 271-430 3-150 (314)
171 TIGR03420 DnaA_homol_Hda DnaA 99.0 3.5E-09 7.7E-14 104.1 11.6 77 325-429 38-117 (226)
172 PRK00411 cdc6 cell division co 99.0 1.3E-08 2.8E-13 108.7 16.6 60 275-361 32-96 (394)
173 PRK05564 DNA polymerase III su 99.0 6.6E-09 1.4E-13 108.3 13.8 109 271-430 3-119 (313)
174 TIGR00678 holB DNA polymerase 99.0 7.9E-09 1.7E-13 99.5 13.2 83 326-429 15-121 (188)
175 PRK11331 5-methylcytosine-spec 99.0 1.7E-08 3.6E-13 109.5 16.8 134 325-477 194-351 (459)
176 COG0470 HolB ATPase involved i 98.9 3.5E-09 7.6E-14 109.2 10.9 117 326-483 24-166 (325)
177 PRK08058 DNA polymerase III su 98.9 1.7E-08 3.7E-13 106.2 14.8 148 271-486 4-170 (329)
178 PF06068 TIP49: TIP49 C-termin 98.9 3.5E-09 7.5E-14 111.5 9.4 63 274-362 25-89 (398)
179 KOG1969 DNA replication checkp 98.9 3.2E-08 7E-13 110.6 16.7 191 275-486 273-469 (877)
180 PTZ00112 origin recognition co 98.9 2.4E-08 5.1E-13 114.3 15.8 86 328-429 784-894 (1164)
181 PRK08084 DNA replication initi 98.9 1.3E-08 2.8E-13 102.1 12.4 25 326-350 46-70 (235)
182 TIGR00764 lon_rel lon-related 98.9 1.1E-08 2.5E-13 115.6 13.1 50 270-352 15-64 (608)
183 PRK10365 transcriptional regul 98.9 1.1E-08 2.3E-13 110.6 12.3 146 305-484 142-302 (441)
184 TIGR02031 BchD-ChlD magnesium 98.9 7.6E-09 1.7E-13 116.7 10.9 116 326-464 17-136 (589)
185 COG1239 ChlI Mg-chelatase subu 98.9 1.9E-08 4E-13 107.2 12.9 141 271-465 15-197 (423)
186 PRK08903 DnaA regulatory inact 98.9 1.3E-08 2.8E-13 100.8 11.0 71 325-429 42-115 (227)
187 PF13177 DNA_pol3_delta2: DNA 98.9 1.8E-08 3.9E-13 95.6 11.5 135 277-477 1-155 (162)
188 smart00763 AAA_PrkA PrkA AAA d 98.8 6.1E-09 1.3E-13 110.1 8.2 63 271-358 49-118 (361)
189 COG1224 TIP49 DNA helicase TIP 98.8 3.2E-08 7E-13 103.1 13.0 62 275-362 41-104 (450)
190 smart00382 AAA ATPases associa 98.8 2.6E-08 5.6E-13 87.4 9.7 76 326-405 3-93 (148)
191 PRK08727 hypothetical protein; 98.8 6.7E-08 1.5E-12 96.8 13.0 64 326-405 42-108 (233)
192 PRK05707 DNA polymerase III su 98.8 8.2E-08 1.8E-12 101.1 13.4 121 325-487 22-167 (328)
193 COG0542 clpA ATP-binding subun 98.8 7.5E-08 1.6E-12 110.0 13.6 125 263-429 161-296 (786)
194 PRK14086 dnaA chromosomal repl 98.7 3.8E-07 8.3E-12 102.4 18.2 85 326-429 315-404 (617)
195 PRK00149 dnaA chromosomal repl 98.7 5.1E-08 1.1E-12 106.6 9.3 85 326-429 149-238 (450)
196 PRK13765 ATP-dependent proteas 98.7 1.1E-07 2.5E-12 107.7 11.2 47 271-350 29-75 (637)
197 COG1474 CDC6 Cdc6-related prot 98.6 3.7E-07 7.9E-12 97.5 14.0 78 325-405 42-138 (366)
198 PRK04132 replication factor C 98.6 2E-07 4.4E-12 108.2 12.3 84 324-429 563-655 (846)
199 PRK06893 DNA replication initi 98.6 1.5E-07 3.3E-12 93.9 9.4 76 326-429 40-118 (229)
200 PRK06871 DNA polymerase III su 98.6 6.1E-07 1.3E-11 94.3 14.3 121 326-486 25-167 (325)
201 PRK13406 bchD magnesium chelat 98.6 1.7E-07 3.7E-12 105.5 10.6 98 326-438 26-127 (584)
202 PRK08769 DNA polymerase III su 98.6 5.7E-07 1.2E-11 94.3 13.9 124 326-486 27-173 (319)
203 TIGR00362 DnaA chromosomal rep 98.6 1.3E-07 2.8E-12 102.0 9.0 85 326-429 137-226 (405)
204 COG4650 RtcR Sigma54-dependent 98.6 1.5E-07 3.3E-12 96.0 8.0 139 317-489 199-363 (531)
205 TIGR00602 rad24 checkpoint pro 98.6 4.7E-07 1E-11 102.6 12.8 59 270-355 82-140 (637)
206 PRK06964 DNA polymerase III su 98.6 7.4E-07 1.6E-11 94.3 13.3 127 325-488 21-194 (342)
207 COG2607 Predicted ATPase (AAA+ 98.5 1.7E-06 3.6E-11 86.5 14.7 172 275-545 62-237 (287)
208 KOG0736 Peroxisome assembly fa 98.5 4.9E-07 1.1E-11 101.8 11.6 178 325-546 431-609 (953)
209 KOG0735 AAA+-type ATPase [Post 98.5 3.8E-07 8.3E-12 101.9 10.4 191 322-551 428-625 (952)
210 PRK05642 DNA replication initi 98.5 3.9E-07 8.5E-12 91.4 9.7 76 326-429 46-124 (234)
211 KOG1942 DNA helicase, TBP-inte 98.5 1.1E-06 2.4E-11 89.7 11.7 59 275-359 40-100 (456)
212 PF00308 Bac_DnaA: Bacterial d 98.5 4.6E-07 9.9E-12 90.1 8.9 85 326-429 35-124 (219)
213 KOG0478 DNA replication licens 98.5 4.7E-07 1E-11 100.8 9.5 98 325-439 462-561 (804)
214 TIGR03015 pepcterm_ATPase puta 98.4 6.6E-06 1.4E-10 83.0 16.5 25 326-350 44-68 (269)
215 PRK07993 DNA polymerase III su 98.4 2.4E-06 5.1E-11 90.3 12.8 121 326-486 25-168 (334)
216 PRK06090 DNA polymerase III su 98.4 5.1E-06 1.1E-10 87.2 15.1 120 326-487 26-169 (319)
217 PRK14088 dnaA chromosomal repl 98.4 1E-06 2.2E-11 96.3 10.2 74 326-405 131-209 (440)
218 PRK12422 chromosomal replicati 98.4 9E-07 2E-11 96.9 9.6 85 326-429 142-229 (445)
219 PF00493 MCM: MCM2/3/5 family 98.4 4E-08 8.6E-13 103.5 -1.3 157 267-465 18-174 (331)
220 PRK08699 DNA polymerase III su 98.4 3E-06 6.6E-11 89.2 12.5 125 325-487 21-174 (325)
221 COG1241 MCM2 Predicted ATPase 98.3 6.8E-07 1.5E-11 101.4 7.0 134 267-438 280-417 (682)
222 KOG0741 AAA+-type ATPase [Post 98.3 3.6E-06 7.7E-11 91.7 11.3 93 325-429 538-633 (744)
223 PRK14087 dnaA chromosomal repl 98.3 2.7E-06 5.8E-11 93.4 10.4 85 326-429 142-233 (450)
224 PRK06620 hypothetical protein; 98.3 4.2E-06 9.1E-11 83.0 10.9 26 326-351 45-70 (214)
225 COG5271 MDN1 AAA ATPase contai 98.3 2E-06 4.4E-11 102.2 8.9 159 324-548 1542-1704(4600)
226 KOG0477 DNA replication licens 98.3 9E-07 1.9E-11 97.6 5.4 166 267-483 443-610 (854)
227 PRK09087 hypothetical protein; 98.2 4.6E-06 9.9E-11 83.4 9.7 28 326-353 45-72 (226)
228 COG5271 MDN1 AAA ATPase contai 98.2 4.4E-06 9.5E-11 99.4 10.4 116 318-456 881-1008(4600)
229 KOG0990 Replication factor C, 98.2 3.7E-06 8E-11 87.0 8.5 109 270-429 39-156 (360)
230 PRK08116 hypothetical protein; 98.2 6.5E-06 1.4E-10 84.4 10.4 86 326-430 115-206 (268)
231 PRK12377 putative replication 98.2 4.1E-06 8.9E-11 85.0 8.4 84 326-430 102-191 (248)
232 KOG0480 DNA replication licens 98.2 6.3E-06 1.4E-10 91.4 10.4 136 267-439 339-477 (764)
233 KOG2035 Replication factor C, 98.2 2E-05 4.3E-10 80.3 13.0 151 326-526 35-215 (351)
234 PF13401 AAA_22: AAA domain; P 98.2 2.6E-06 5.5E-11 76.2 5.5 36 325-360 4-47 (131)
235 PF13173 AAA_14: AAA domain 98.1 1.1E-05 2.3E-10 73.1 8.9 70 326-403 3-74 (128)
236 PF06309 Torsin: Torsin; Inte 98.1 9E-06 1.9E-10 74.1 7.5 65 261-349 13-77 (127)
237 PRK07276 DNA polymerase III su 98.1 5.3E-05 1.1E-09 78.6 13.4 119 326-483 25-161 (290)
238 PRK08181 transposase; Validate 98.1 4.6E-06 9.9E-11 85.6 5.5 88 323-429 104-194 (269)
239 PF01637 Arch_ATPase: Archaeal 98.1 2.2E-05 4.7E-10 76.3 9.8 24 326-349 21-44 (234)
240 KOG2227 Pre-initiation complex 98.0 2.5E-05 5.4E-10 84.4 10.8 167 275-549 152-340 (529)
241 PRK07952 DNA replication prote 98.0 1.5E-05 3.2E-10 80.8 8.2 86 326-430 100-190 (244)
242 PF12775 AAA_7: P-loop contain 98.0 2.2E-05 4.7E-10 80.7 9.5 140 325-490 33-185 (272)
243 KOG1514 Origin recognition com 98.0 3.2E-05 7E-10 86.9 11.4 125 326-482 423-568 (767)
244 PRK06526 transposase; Provisio 98.0 5.7E-06 1.2E-10 84.2 4.9 87 324-429 97-186 (254)
245 PRK05917 DNA polymerase III su 97.9 6.9E-05 1.5E-09 77.7 11.4 114 326-477 20-148 (290)
246 PF00910 RNA_helicase: RNA hel 97.9 4.2E-05 9E-10 67.4 8.4 23 328-350 1-23 (107)
247 PRK07132 DNA polymerase III su 97.9 0.00016 3.6E-09 75.3 13.9 83 326-430 19-116 (299)
248 PF05729 NACHT: NACHT domain 97.9 0.00016 3.5E-09 66.5 12.1 23 327-349 2-24 (166)
249 KOG2680 DNA helicase TIP49, TB 97.9 0.00012 2.7E-09 75.3 12.1 62 274-361 41-104 (454)
250 PF03215 Rad17: Rad17 cell cyc 97.9 0.00023 4.9E-09 79.5 14.9 31 326-356 46-76 (519)
251 COG0283 Cmk Cytidylate kinase 97.9 2.2E-05 4.7E-10 77.6 6.0 119 326-456 5-130 (222)
252 COG1484 DnaC DNA replication p 97.9 3.3E-05 7.2E-10 78.6 7.5 78 317-405 98-182 (254)
253 PRK09183 transposase/IS protei 97.8 3E-05 6.4E-10 79.2 6.8 90 322-429 99-191 (259)
254 PRK06835 DNA replication prote 97.8 3.6E-05 7.9E-10 81.2 7.2 86 326-430 184-274 (329)
255 PF12774 AAA_6: Hydrolytic ATP 97.8 5.9E-05 1.3E-09 75.9 8.4 67 326-405 33-99 (231)
256 PF05621 TniB: Bacterial TniB 97.8 0.00014 3E-09 75.5 11.0 61 264-349 25-85 (302)
257 PF01695 IstB_IS21: IstB-like 97.8 2.9E-05 6.3E-10 74.9 5.4 84 325-430 47-136 (178)
258 PRK05818 DNA polymerase III su 97.7 0.00038 8.2E-09 71.1 12.7 123 325-485 7-147 (261)
259 PRK11860 bifunctional 3-phosph 97.7 8.8E-05 1.9E-09 85.2 9.0 122 326-460 443-570 (661)
260 COG0464 SpoVK ATPases of the A 97.7 9.1E-05 2E-09 82.0 8.6 97 324-430 17-113 (494)
261 PRK09518 bifunctional cytidyla 97.7 0.00012 2.6E-09 84.8 9.5 209 327-554 3-236 (712)
262 PRK13477 bifunctional pantoate 97.7 0.00026 5.7E-09 78.7 11.2 128 323-460 282-417 (512)
263 PF13207 AAA_17: AAA domain; P 97.6 5.2E-05 1.1E-09 67.1 3.7 31 328-358 2-32 (121)
264 TIGR00017 cmk cytidylate kinas 97.6 0.00024 5.2E-09 70.7 8.8 90 326-417 3-99 (217)
265 PRK06921 hypothetical protein; 97.6 0.0002 4.4E-09 73.4 8.2 36 326-361 118-157 (266)
266 KOG0482 DNA replication licens 97.5 0.0001 2.2E-09 80.3 5.6 138 264-439 333-474 (721)
267 PRK08939 primosomal protein Dn 97.5 0.00017 3.7E-09 75.4 6.6 38 325-362 156-196 (306)
268 PHA02624 large T antigen; Prov 97.5 0.00024 5.3E-09 79.7 8.1 131 324-484 430-561 (647)
269 COG0593 DnaA ATPase involved i 97.5 0.00081 1.7E-08 72.7 11.7 72 326-405 114-190 (408)
270 PRK00131 aroK shikimate kinase 97.5 0.00012 2.5E-09 68.6 4.4 34 324-357 3-36 (175)
271 PF13191 AAA_16: AAA ATPase do 97.4 0.00024 5.2E-09 67.0 6.2 59 275-361 2-63 (185)
272 KOG0481 DNA replication licens 97.4 0.00016 3.4E-09 78.9 5.4 135 267-439 325-463 (729)
273 PRK12269 bifunctional cytidyla 97.4 0.00062 1.4E-08 80.0 10.4 33 326-358 35-67 (863)
274 COG1102 Cmk Cytidylate kinase 97.4 0.0004 8.6E-09 66.0 7.0 39 515-553 138-176 (179)
275 KOG1808 AAA ATPase containing 97.3 0.00011 2.5E-09 90.4 3.1 114 326-456 441-560 (1856)
276 PRK13947 shikimate kinase; Pro 97.3 0.0002 4.4E-09 67.4 4.2 32 327-358 3-34 (171)
277 cd01120 RecA-like_NTPases RecA 97.3 0.00045 9.7E-09 63.0 6.4 33 327-359 1-36 (165)
278 PHA00729 NTP-binding motif con 97.3 0.00035 7.5E-09 70.0 5.9 25 326-350 18-42 (226)
279 PRK07261 topology modulation p 97.3 0.00055 1.2E-08 65.4 7.1 43 327-370 2-44 (171)
280 COG0703 AroK Shikimate kinase 97.3 0.0002 4.2E-09 68.8 3.7 34 326-359 3-36 (172)
281 PRK08118 topology modulation p 97.3 0.00023 5E-09 67.8 3.9 33 327-359 3-35 (167)
282 PF07693 KAP_NTPase: KAP famil 97.3 0.0039 8.5E-08 64.6 13.2 36 324-359 19-60 (325)
283 PRK00625 shikimate kinase; Pro 97.2 0.00028 6.1E-09 67.9 4.2 32 327-358 2-33 (173)
284 PRK03839 putative kinase; Prov 97.2 0.00029 6.3E-09 67.2 4.0 31 327-357 2-32 (180)
285 TIGR02688 conserved hypothetic 97.2 0.0032 7E-08 68.4 12.3 77 325-429 209-289 (449)
286 cd00464 SK Shikimate kinase (S 97.2 0.00036 7.9E-09 64.1 4.2 31 327-357 1-31 (154)
287 KOG3347 Predicted nucleotide k 97.2 0.00033 7.1E-09 65.7 3.8 32 325-356 7-38 (176)
288 PRK10536 hypothetical protein; 97.2 0.0028 6.1E-08 64.7 10.7 23 326-348 75-97 (262)
289 PRK00023 cmk cytidylate kinase 97.2 0.0019 4E-08 64.6 9.3 32 326-357 5-36 (225)
290 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.0029 6.3E-08 67.8 10.6 29 323-351 60-88 (362)
291 PRK13948 shikimate kinase; Pro 97.1 0.00053 1.1E-08 66.5 4.5 35 324-358 9-43 (182)
292 PRK15455 PrkA family serine pr 97.1 0.00064 1.4E-08 76.1 5.2 63 270-358 74-137 (644)
293 PF03266 NTPase_1: NTPase; In 97.1 0.0021 4.6E-08 61.5 8.1 23 327-349 1-23 (168)
294 PRK06217 hypothetical protein; 97.0 0.00054 1.2E-08 65.8 4.0 33 327-359 3-35 (183)
295 cd01128 rho_factor Transcripti 97.0 0.0012 2.6E-08 67.1 6.7 81 325-406 16-119 (249)
296 PF13604 AAA_30: AAA domain; P 97.0 0.0031 6.7E-08 61.6 9.2 33 326-358 19-54 (196)
297 PRK13949 shikimate kinase; Pro 97.0 0.00057 1.2E-08 65.3 3.9 33 326-358 2-34 (169)
298 PHA02774 E1; Provisional 97.0 0.0043 9.4E-08 69.6 11.1 80 325-438 434-514 (613)
299 KOG0479 DNA replication licens 97.0 0.0029 6.4E-08 70.2 9.5 129 268-439 296-433 (818)
300 PRK09376 rho transcription ter 97.0 0.0014 3E-08 70.6 6.8 80 326-406 170-272 (416)
301 COG1618 Predicted nucleotide k 97.0 0.0022 4.7E-08 61.0 7.1 24 326-349 6-29 (179)
302 PRK14532 adenylate kinase; Pro 97.0 0.00067 1.5E-08 65.1 3.8 30 327-356 2-31 (188)
303 PRK14530 adenylate kinase; Pro 97.0 0.00076 1.6E-08 66.5 4.3 31 326-356 4-34 (215)
304 PRK14974 cell division protein 97.0 0.016 3.4E-07 61.6 14.4 25 325-349 140-164 (336)
305 cd02020 CMPK Cytidine monophos 96.9 0.00076 1.6E-08 61.3 3.9 30 328-357 2-31 (147)
306 PF13671 AAA_33: AAA domain; P 96.9 0.00053 1.1E-08 62.3 2.7 27 328-354 2-28 (143)
307 PRK13946 shikimate kinase; Pro 96.9 0.00086 1.9E-08 64.6 4.1 34 325-358 10-43 (184)
308 PRK03731 aroL shikimate kinase 96.9 0.00095 2.1E-08 63.0 4.3 33 326-358 3-35 (171)
309 KOG0058 Peptide exporter, ABC 96.9 0.002 4.3E-08 73.3 7.2 36 314-349 483-518 (716)
310 PRK05057 aroK shikimate kinase 96.9 0.0011 2.3E-08 63.5 4.4 34 325-358 4-37 (172)
311 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00096 2.1E-08 63.5 4.0 33 328-362 2-34 (183)
312 cd00227 CPT Chloramphenicol (C 96.8 0.00097 2.1E-08 63.5 3.8 34 326-359 3-36 (175)
313 cd02021 GntK Gluconate kinase 96.8 0.001 2.2E-08 61.3 3.6 29 328-356 2-30 (150)
314 PRK14531 adenylate kinase; Pro 96.8 0.0012 2.7E-08 63.4 4.2 30 326-355 3-32 (183)
315 TIGR01313 therm_gnt_kin carboh 96.8 0.00098 2.1E-08 62.4 3.4 29 328-356 1-29 (163)
316 cd01428 ADK Adenylate kinase ( 96.8 0.0012 2.5E-08 63.2 3.9 29 328-356 2-30 (194)
317 PRK05480 uridine/cytidine kina 96.8 0.036 7.9E-07 54.1 14.4 26 325-350 6-31 (209)
318 PF05272 VirE: Virulence-assoc 96.7 0.0063 1.4E-07 59.8 8.8 99 326-466 53-151 (198)
319 PRK00771 signal recognition pa 96.7 0.021 4.5E-07 62.7 13.7 36 324-359 94-132 (437)
320 PRK08154 anaerobic benzoate ca 96.7 0.0026 5.7E-08 66.5 6.3 34 324-357 132-165 (309)
321 PRK13808 adenylate kinase; Pro 96.7 0.033 7.2E-07 59.0 14.3 30 327-356 2-31 (333)
322 KOG2543 Origin recognition com 96.7 0.01 2.2E-07 63.4 10.1 63 271-361 4-66 (438)
323 KOG1051 Chaperone HSP104 and r 96.7 0.016 3.4E-07 68.2 12.6 76 326-405 209-295 (898)
324 TIGR01618 phage_P_loop phage n 96.7 0.0021 4.6E-08 64.2 4.7 22 325-346 12-33 (220)
325 cd02027 APSK Adenosine 5'-phos 96.7 0.0047 1E-07 57.6 6.8 33 328-360 2-37 (149)
326 PRK12723 flagellar biosynthesi 96.6 0.026 5.7E-07 61.0 13.3 25 325-349 174-198 (388)
327 PTZ00088 adenylate kinase 1; P 96.6 0.002 4.3E-08 64.8 4.4 32 326-357 7-38 (229)
328 TIGR00767 rho transcription te 96.6 0.0044 9.6E-08 67.0 6.9 28 324-351 167-194 (415)
329 PRK04296 thymidine kinase; Pro 96.6 0.0083 1.8E-07 58.3 8.2 30 327-356 4-36 (190)
330 COG3854 SpoIIIAA ncharacterize 96.6 0.0067 1.4E-07 61.0 7.5 78 325-402 137-230 (308)
331 TIGR01425 SRP54_euk signal rec 96.6 0.026 5.6E-07 61.8 12.8 35 325-359 100-137 (429)
332 COG1116 TauB ABC-type nitrate/ 96.5 0.015 3.3E-07 58.8 10.0 37 313-349 17-53 (248)
333 PRK06762 hypothetical protein; 96.5 0.0024 5.2E-08 59.9 3.9 36 326-361 3-38 (166)
334 cd01124 KaiC KaiC is a circadi 96.5 0.0049 1.1E-07 58.5 6.0 31 328-358 2-35 (187)
335 PRK14528 adenylate kinase; Pro 96.5 0.0026 5.5E-08 61.6 4.1 30 326-355 2-31 (186)
336 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0026 5.5E-08 60.5 4.0 29 326-354 4-32 (188)
337 COG1936 Predicted nucleotide k 96.5 0.0022 4.8E-08 61.6 3.5 30 327-357 2-31 (180)
338 PF13521 AAA_28: AAA domain; P 96.5 0.0031 6.6E-08 59.2 4.4 33 328-361 2-34 (163)
339 COG0563 Adk Adenylate kinase a 96.5 0.0026 5.5E-08 61.6 4.0 32 327-360 2-33 (178)
340 PF00448 SRP54: SRP54-type pro 96.5 0.013 2.8E-07 57.5 8.8 24 326-349 2-25 (196)
341 COG4608 AppF ABC-type oligopep 96.5 0.0087 1.9E-07 61.3 7.7 39 312-350 26-64 (268)
342 KOG1968 Replication factor C, 96.5 0.0038 8.2E-08 73.4 5.8 36 327-362 359-394 (871)
343 PRK02496 adk adenylate kinase; 96.4 0.0027 5.9E-08 60.7 3.9 30 327-356 3-32 (184)
344 PF13238 AAA_18: AAA domain; P 96.4 0.0023 4.9E-08 56.5 3.0 22 328-349 1-22 (129)
345 PRK06547 hypothetical protein; 96.4 0.0027 5.9E-08 61.0 3.8 32 326-357 16-47 (172)
346 KOG0922 DEAH-box RNA helicase 96.4 0.021 4.5E-07 64.5 10.8 15 326-340 67-81 (674)
347 COG0529 CysC Adenylylsulfate k 96.4 0.0067 1.4E-07 58.6 6.0 38 325-362 23-63 (197)
348 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0058 1.3E-07 61.6 5.9 32 328-359 2-36 (249)
349 PTZ00301 uridine kinase; Provi 96.4 0.025 5.5E-07 56.1 10.3 25 326-350 4-28 (210)
350 PRK04182 cytidylate kinase; Pr 96.3 0.0033 7.3E-08 59.1 3.8 29 327-355 2-30 (180)
351 COG1125 OpuBA ABC-type proline 96.3 0.016 3.5E-07 59.1 8.7 37 313-349 15-51 (309)
352 PRK00279 adk adenylate kinase; 96.3 0.0036 7.9E-08 61.7 4.2 30 327-356 2-31 (215)
353 TIGR01351 adk adenylate kinase 96.3 0.0033 7.2E-08 61.7 3.9 29 328-356 2-30 (210)
354 PF01583 APS_kinase: Adenylyls 96.3 0.01 2.2E-07 56.3 6.6 73 326-400 3-83 (156)
355 PLN02199 shikimate kinase 96.3 0.0042 9.1E-08 64.6 4.3 34 325-358 102-135 (303)
356 TIGR03499 FlhF flagellar biosy 96.3 0.038 8.2E-07 57.2 11.4 25 325-349 194-218 (282)
357 PLN02200 adenylate kinase fami 96.2 0.0042 9.1E-08 62.6 4.1 36 325-362 43-78 (234)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.017 3.6E-07 53.6 7.7 35 315-349 16-50 (144)
359 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0041 9E-08 58.1 3.5 30 327-356 2-31 (171)
360 PF08433 KTI12: Chromatin asso 96.2 0.0097 2.1E-07 61.3 6.5 72 328-400 4-80 (270)
361 PF09848 DUF2075: Uncharacteri 96.2 0.02 4.4E-07 60.8 9.1 24 326-349 2-25 (352)
362 COG0572 Udk Uridine kinase [Nu 96.2 0.037 8E-07 55.2 10.3 173 326-533 9-191 (218)
363 PRK14527 adenylate kinase; Pro 96.2 0.0046 9.9E-08 59.8 3.8 30 325-354 6-35 (191)
364 TIGR01526 nadR_NMN_Atrans nico 96.1 0.0083 1.8E-07 63.3 5.7 37 326-362 163-199 (325)
365 PLN02674 adenylate kinase 96.1 0.0052 1.1E-07 62.4 4.0 35 325-361 31-65 (244)
366 cd01131 PilT Pilus retraction 96.1 0.0092 2E-07 58.3 5.5 25 326-350 2-26 (198)
367 PF05970 PIF1: PIF1-like helic 96.1 0.018 4E-07 61.6 8.2 27 325-351 22-48 (364)
368 PRK14722 flhF flagellar biosyn 96.1 0.031 6.6E-07 60.2 9.9 27 323-349 135-161 (374)
369 KOG3354 Gluconate kinase [Carb 96.1 0.0053 1.2E-07 58.1 3.5 33 325-357 12-44 (191)
370 PRK03846 adenylylsulfate kinas 96.1 0.019 4.2E-07 55.8 7.6 37 324-360 23-62 (198)
371 cd01130 VirB11-like_ATPase Typ 96.0 0.015 3.3E-07 56.1 6.7 27 324-350 24-50 (186)
372 PRK10078 ribose 1,5-bisphospho 96.0 0.0055 1.2E-07 59.0 3.5 29 326-354 3-31 (186)
373 TIGR02237 recomb_radB DNA repa 96.0 0.014 3.1E-07 56.8 6.5 36 325-360 12-50 (209)
374 PRK04040 adenylate kinase; Pro 96.0 0.0061 1.3E-07 59.3 3.8 29 326-354 3-33 (188)
375 PRK01184 hypothetical protein; 96.0 0.0061 1.3E-07 58.3 3.8 29 327-356 3-31 (184)
376 KOG0055 Multidrug/pheromone ex 96.0 0.039 8.4E-07 66.6 10.9 47 314-360 1005-1053(1228)
377 PRK11889 flhF flagellar biosyn 96.0 0.15 3.2E-06 55.5 14.3 25 325-349 241-265 (436)
378 PHA02530 pseT polynucleotide k 96.0 0.0059 1.3E-07 62.8 3.7 30 326-355 3-33 (300)
379 cd02019 NK Nucleoside/nucleoti 96.0 0.0068 1.5E-07 49.2 3.3 22 328-349 2-23 (69)
380 PRK14526 adenylate kinase; Pro 95.9 0.0074 1.6E-07 59.9 4.1 28 327-354 2-29 (211)
381 PF00406 ADK: Adenylate kinase 95.9 0.0052 1.1E-07 56.9 2.8 31 330-362 1-31 (151)
382 PRK09361 radB DNA repair and r 95.9 0.016 3.5E-07 57.2 6.5 36 324-359 22-60 (225)
383 PRK10867 signal recognition pa 95.9 0.12 2.5E-06 56.9 13.6 35 325-359 100-138 (433)
384 TIGR01448 recD_rel helicase, p 95.9 0.031 6.8E-07 65.1 9.7 25 325-349 338-362 (720)
385 cd01121 Sms Sms (bacterial rad 95.9 0.016 3.4E-07 62.4 6.7 35 325-359 82-119 (372)
386 PRK04220 2-phosphoglycerate ki 95.9 0.021 4.6E-07 59.6 7.4 78 264-353 40-120 (301)
387 PRK08233 hypothetical protein; 95.9 0.009 1.9E-07 56.4 4.3 25 326-350 4-28 (182)
388 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0074 1.6E-07 55.8 3.5 28 325-352 22-49 (133)
389 PRK06696 uridine kinase; Valid 95.9 0.0087 1.9E-07 59.4 4.2 37 326-362 23-62 (223)
390 COG1643 HrpA HrpA-like helicas 95.8 0.063 1.4E-06 63.2 11.7 21 326-346 66-86 (845)
391 PRK11823 DNA repair protein Ra 95.8 0.026 5.5E-07 62.2 8.1 36 325-360 80-118 (446)
392 PF13245 AAA_19: Part of AAA d 95.8 0.013 2.9E-07 48.7 4.5 24 326-349 11-35 (76)
393 KOG0055 Multidrug/pheromone ex 95.8 0.023 5E-07 68.5 8.1 38 313-350 367-404 (1228)
394 smart00487 DEXDc DEAD-like hel 95.8 0.029 6.4E-07 52.0 7.4 24 326-349 25-49 (201)
395 PRK05800 cobU adenosylcobinami 95.8 0.017 3.8E-07 55.3 5.9 34 327-360 3-36 (170)
396 PF12780 AAA_8: P-loop contain 95.8 0.054 1.2E-06 55.8 9.8 70 324-400 30-99 (268)
397 TIGR02012 tigrfam_recA protein 95.8 0.026 5.6E-07 59.6 7.7 78 324-405 54-148 (321)
398 COG2274 SunT ABC-type bacterio 95.8 0.021 4.5E-07 66.3 7.5 36 314-349 488-523 (709)
399 PF00931 NB-ARC: NB-ARC domain 95.8 0.019 4.1E-07 58.3 6.5 24 325-348 19-42 (287)
400 PRK14529 adenylate kinase; Pro 95.8 0.0084 1.8E-07 60.1 3.7 28 327-354 2-29 (223)
401 COG3267 ExeA Type II secretory 95.8 0.059 1.3E-06 54.9 9.6 90 326-429 52-156 (269)
402 PRK12727 flagellar biosynthesi 95.7 0.15 3.2E-06 57.3 13.6 26 324-349 349-374 (559)
403 smart00534 MUTSac ATPase domai 95.7 0.044 9.6E-07 52.8 8.4 19 328-346 2-20 (185)
404 cd03283 ABC_MutS-like MutS-lik 95.7 0.045 9.8E-07 53.7 8.6 24 326-349 26-49 (199)
405 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.048 1.1E-06 50.7 8.3 35 316-350 16-50 (157)
406 PRK12608 transcription termina 95.7 0.017 3.7E-07 62.1 5.8 24 326-349 134-157 (380)
407 PRK05541 adenylylsulfate kinas 95.6 0.011 2.3E-07 56.3 3.6 27 324-350 6-32 (176)
408 PLN02165 adenylate isopentenyl 95.6 0.011 2.4E-07 62.5 4.1 35 325-359 43-77 (334)
409 PF01443 Viral_helicase1: Vira 95.6 0.01 2.2E-07 58.4 3.6 22 328-349 1-22 (234)
410 COG1373 Predicted ATPase (AAA+ 95.6 0.019 4.1E-07 62.3 6.0 69 327-403 39-107 (398)
411 TIGR00455 apsK adenylylsulfate 95.6 0.031 6.7E-07 53.5 6.8 37 325-361 18-57 (184)
412 PRK00889 adenylylsulfate kinas 95.6 0.014 3E-07 55.3 4.3 35 325-359 4-41 (175)
413 PRK06067 flagellar accessory p 95.6 0.025 5.5E-07 56.3 6.4 36 323-358 23-61 (234)
414 PLN02459 probable adenylate ki 95.6 0.012 2.7E-07 60.2 4.2 29 326-354 30-58 (261)
415 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.064 1.4E-06 53.7 9.1 24 324-347 30-53 (222)
416 PRK14021 bifunctional shikimat 95.5 0.012 2.5E-07 66.4 4.2 34 326-359 7-40 (542)
417 PRK09825 idnK D-gluconate kina 95.5 0.013 2.8E-07 56.4 3.8 29 325-353 3-31 (176)
418 TIGR02322 phosphon_PhnN phosph 95.5 0.012 2.5E-07 55.9 3.4 25 327-351 3-27 (179)
419 cd03284 ABC_MutS1 MutS1 homolo 95.5 0.058 1.3E-06 53.6 8.4 22 326-347 31-52 (216)
420 PRK13900 type IV secretion sys 95.4 0.058 1.3E-06 57.2 8.8 26 325-350 160-185 (332)
421 PRK13975 thymidylate kinase; P 95.4 0.023 5E-07 54.6 5.3 27 326-352 3-29 (196)
422 TIGR01420 pilT_fam pilus retra 95.4 0.036 7.8E-07 58.9 7.2 25 326-350 123-147 (343)
423 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.058 1.3E-06 53.4 8.2 22 326-347 30-51 (213)
424 PRK05703 flhF flagellar biosyn 95.4 0.16 3.4E-06 55.8 12.2 25 325-349 221-245 (424)
425 TIGR02788 VirB11 P-type DNA tr 95.3 0.026 5.7E-07 59.0 5.8 26 325-350 144-169 (308)
426 cd00544 CobU Adenosylcobinamid 95.3 0.048 1E-06 52.3 7.1 32 328-359 2-33 (169)
427 PRK12339 2-phosphoglycerate ki 95.3 0.016 3.5E-07 56.9 3.9 28 326-353 4-31 (197)
428 PRK00091 miaA tRNA delta(2)-is 95.3 0.017 3.7E-07 60.6 4.2 34 326-359 5-38 (307)
429 TIGR00064 ftsY signal recognit 95.3 0.057 1.2E-06 55.7 8.0 34 325-358 72-108 (272)
430 cd03243 ABC_MutS_homologs The 95.3 0.087 1.9E-06 51.4 8.9 23 325-347 29-51 (202)
431 TIGR00959 ffh signal recogniti 95.3 0.35 7.6E-06 53.1 14.4 35 325-359 99-137 (428)
432 COG1485 Predicted ATPase [Gene 95.2 0.13 2.7E-06 54.8 10.3 29 322-350 62-90 (367)
433 PRK08099 bifunctional DNA-bind 95.2 0.032 7E-07 60.6 6.2 30 326-355 220-249 (399)
434 cd03222 ABC_RNaseL_inhibitor T 95.2 0.074 1.6E-06 51.4 7.9 27 323-349 23-49 (177)
435 TIGR02768 TraA_Ti Ti-type conj 95.2 0.049 1.1E-06 63.8 7.9 77 325-405 368-454 (744)
436 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.067 1.4E-06 52.8 7.7 25 324-348 28-52 (204)
437 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.025 5.4E-07 60.2 5.0 61 271-356 59-120 (358)
438 cd01123 Rad51_DMC1_radA Rad51_ 95.2 0.053 1.1E-06 53.6 7.1 25 324-348 18-42 (235)
439 PF01202 SKI: Shikimate kinase 95.2 0.012 2.6E-07 55.2 2.4 26 334-359 1-26 (158)
440 KOG1970 Checkpoint RAD17-RFC c 95.1 0.014 3.1E-07 64.7 3.1 32 326-357 111-142 (634)
441 PRK13951 bifunctional shikimat 95.1 0.018 3.9E-07 64.1 4.0 32 327-358 2-33 (488)
442 KOG0056 Heavy metal exporter H 95.1 0.024 5.1E-07 62.3 4.7 118 313-440 552-673 (790)
443 PF06745 KaiC: KaiC; InterPro 95.1 0.089 1.9E-06 52.0 8.5 37 323-359 17-57 (226)
444 PRK13764 ATPase; Provisional 95.1 0.033 7.2E-07 63.4 6.0 25 326-350 258-282 (602)
445 PF00485 PRK: Phosphoribulokin 95.1 0.017 3.6E-07 56.1 3.2 24 328-351 2-25 (194)
446 PRK12338 hypothetical protein; 95.1 0.019 4.1E-07 60.5 3.8 30 325-354 4-33 (319)
447 cd02022 DPCK Dephospho-coenzym 95.1 0.022 4.7E-07 54.6 3.9 32 328-362 2-33 (179)
448 PRK00300 gmk guanylate kinase; 95.1 0.018 4E-07 55.8 3.5 27 324-350 4-30 (205)
449 TIGR01967 DEAH_box_HrpA ATP-de 95.1 0.14 3E-06 62.9 11.5 33 318-350 75-107 (1283)
450 PF02562 PhoH: PhoH-like prote 95.0 0.036 7.7E-07 54.9 5.4 24 326-349 20-43 (205)
451 PRK11545 gntK gluconate kinase 95.0 0.017 3.6E-07 54.8 2.9 27 331-357 1-27 (163)
452 cd00071 GMPK Guanosine monopho 95.0 0.021 4.6E-07 52.5 3.5 26 328-353 2-27 (137)
453 cd00983 recA RecA is a bacter 95.0 0.069 1.5E-06 56.5 7.7 77 324-404 54-147 (325)
454 PF01745 IPT: Isopentenyl tran 95.0 0.022 4.7E-07 56.7 3.7 36 327-362 3-38 (233)
455 PRK06581 DNA polymerase III su 95.0 0.22 4.8E-06 50.7 10.8 117 326-480 16-145 (263)
456 cd02024 NRK1 Nicotinamide ribo 95.0 0.022 4.7E-07 55.6 3.6 23 328-350 2-24 (187)
457 TIGR03263 guanyl_kin guanylate 95.0 0.018 3.9E-07 54.6 2.9 26 326-351 2-27 (180)
458 cd01129 PulE-GspE PulE/GspE Th 94.9 0.023 5E-07 58.2 3.9 25 326-350 81-105 (264)
459 KOG0924 mRNA splicing factor A 94.9 0.068 1.5E-06 60.6 7.6 25 316-340 362-386 (1042)
460 PRK09354 recA recombinase A; P 94.9 0.074 1.6E-06 56.8 7.7 77 324-404 59-152 (349)
461 PRK05537 bifunctional sulfate 94.9 0.047 1E-06 62.0 6.6 36 325-360 392-431 (568)
462 PF13479 AAA_24: AAA domain 94.9 0.039 8.5E-07 54.5 5.2 20 326-345 4-23 (213)
463 PF13086 AAA_11: AAA domain; P 94.9 0.021 4.6E-07 55.2 3.2 22 328-349 20-41 (236)
464 cd03280 ABC_MutS2 MutS2 homolo 94.8 0.044 9.6E-07 53.4 5.4 21 326-346 29-49 (200)
465 PRK14730 coaE dephospho-CoA ki 94.8 0.027 5.8E-07 55.1 3.9 34 327-362 3-36 (195)
466 cd02028 UMPK_like Uridine mono 94.8 0.03 6.6E-07 53.9 4.2 34 328-361 2-38 (179)
467 PRK14723 flhF flagellar biosyn 94.8 0.45 9.8E-06 55.6 14.3 25 325-349 185-209 (767)
468 KOG2228 Origin recognition com 94.8 0.53 1.1E-05 50.0 13.3 33 326-358 50-85 (408)
469 PF06048 DUF927: Domain of unk 94.8 0.22 4.9E-06 51.5 10.8 104 262-405 154-257 (286)
470 PLN02840 tRNA dimethylallyltra 94.8 0.03 6.4E-07 61.1 4.3 33 326-358 22-54 (421)
471 TIGR00235 udk uridine kinase. 94.8 0.023 5.1E-07 55.6 3.2 26 325-350 6-31 (207)
472 PRK10416 signal recognition pa 94.8 0.1 2.2E-06 55.0 8.2 26 324-349 113-138 (318)
473 cd02023 UMPK Uridine monophosp 94.8 0.024 5.2E-07 54.9 3.3 22 328-349 2-23 (198)
474 PF02367 UPF0079: Uncharacteri 94.7 0.019 4.2E-07 52.3 2.3 28 325-352 15-42 (123)
475 PLN02348 phosphoribulokinase 94.7 0.14 3E-06 55.5 9.1 26 326-351 50-75 (395)
476 COG4088 Predicted nucleotide k 94.7 0.022 4.8E-07 56.4 2.9 23 327-349 3-25 (261)
477 cd01672 TMPK Thymidine monopho 94.7 0.035 7.6E-07 52.8 4.1 22 328-349 3-24 (200)
478 TIGR00174 miaA tRNA isopenteny 94.7 0.032 7E-07 58.0 4.1 32 328-359 2-33 (287)
479 COG1855 ATPase (PilT family) [ 94.6 0.04 8.6E-07 60.1 4.8 25 326-350 264-288 (604)
480 PRK06761 hypothetical protein; 94.6 0.032 6.9E-07 57.9 4.0 32 326-357 4-35 (282)
481 PRK08356 hypothetical protein; 94.6 0.035 7.5E-07 53.9 3.9 32 326-360 6-37 (195)
482 COG5245 DYN1 Dynein, heavy cha 94.5 0.12 2.6E-06 63.2 8.6 116 324-465 1493-1621(3164)
483 PRK14737 gmk guanylate kinase; 94.5 0.031 6.8E-07 54.3 3.4 25 325-349 4-28 (186)
484 TIGR03375 type_I_sec_LssB type 94.5 0.065 1.4E-06 62.0 6.5 34 316-349 482-515 (694)
485 PF00488 MutS_V: MutS domain V 94.5 0.18 3.9E-06 50.9 8.9 24 326-349 44-67 (235)
486 PF06414 Zeta_toxin: Zeta toxi 94.5 0.04 8.8E-07 53.6 4.1 39 325-363 15-54 (199)
487 cd01394 radB RadB. The archaea 94.4 0.11 2.5E-06 50.8 7.2 34 325-358 19-55 (218)
488 COG3842 PotA ABC-type spermidi 94.4 0.029 6.2E-07 59.9 3.1 36 314-349 20-55 (352)
489 TIGR00416 sms DNA repair prote 94.4 0.13 2.9E-06 56.8 8.4 35 325-359 94-131 (454)
490 TIGR01447 recD exodeoxyribonuc 94.4 0.18 3.9E-06 57.5 9.6 25 325-349 160-184 (586)
491 COG3265 GntK Gluconate kinase 94.4 0.029 6.3E-07 52.8 2.6 27 331-357 1-27 (161)
492 COG2804 PulE Type II secretory 94.3 0.18 3.9E-06 55.9 9.2 69 326-402 259-339 (500)
493 PRK12337 2-phosphoglycerate ki 94.3 0.14 3E-06 56.6 8.2 28 325-352 255-282 (475)
494 cd03115 SRP The signal recogni 94.3 0.052 1.1E-06 51.3 4.4 32 328-359 3-37 (173)
495 cd00820 PEPCK_HprK Phosphoenol 94.3 0.031 6.7E-07 49.8 2.6 23 324-346 14-36 (107)
496 PRK13889 conjugal transfer rel 94.3 0.093 2E-06 63.0 7.3 94 321-429 358-458 (988)
497 PRK09270 nucleoside triphospha 94.3 0.088 1.9E-06 52.4 6.1 25 326-350 34-58 (229)
498 PRK00081 coaE dephospho-CoA ki 94.3 0.044 9.4E-07 53.4 3.8 33 327-362 4-36 (194)
499 COG1419 FlhF Flagellar GTP-bin 94.2 0.28 6E-06 53.2 10.1 26 324-349 202-227 (407)
500 TIGR00152 dephospho-CoA kinase 94.2 0.044 9.6E-07 52.7 3.8 29 328-356 2-30 (188)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-55 Score=456.85 Aligned_cols=297 Identities=71% Similarity=1.061 Sum_probs=267.6
Q ss_pred CCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHH--hhhccCC-CCChh-------------------------h
Q 008723 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYH--ANLKKGS-GAEPK-------------------------T 311 (556)
Q Consensus 260 ~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~--~~~~~~~-g~s~~-------------------------~ 311 (556)
..++|+++++.||++||||+.||+.|..+|++||+||++ ..+++.. +.+.. .
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 568999999999999999999999999999999999998 2222211 11111 2
Q ss_pred hhhhccc-ccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccC
Q 008723 312 AAAVDND-DNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 312 ~~~~~~~-~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
....+.. +.+.+.+.+|||.||+|+|||+||+.||+.++.||...||+.+++.+|+|+++|..+.+++..+.++++.++
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ 291 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ 291 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh
Confidence 2233333 388889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~ 470 (556)
.+|+||||+|++.....+....+++++++||+.||+++||++|++|+.+.++..+.+.++|||+||+|||.++|.+|+++
T Consensus 292 qGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 292 QGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred cCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 99999999999998888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccCCh----hhhhhcc--ccchhHhH-HHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHH
Q 008723 471 ISERRQDSSIGFGAP----VRANMRA--GVTDAAVT-SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (556)
Q Consensus 471 i~~rr~~~~i~f~~p----~~~~~~~--~~~~~~~~-~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl 543 (556)
+.+|+.++.++|+.| .+.++.+ ..+....+ +.+++.+++.||+.++++|||++||+.+++|.+|++++|++||
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 999999999999999 5666665 44444444 4499999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhcC
Q 008723 544 TEPKNALGQITFY 556 (556)
Q Consensus 544 ~~~~~~l~kqy~~ 556 (556)
+|+.++|.+||+|
T Consensus 452 tEPknaL~~Qyk~ 464 (564)
T KOG0745|consen 452 TEPKNALGKQYKK 464 (564)
T ss_pred hcchhhHHHHHHH
Confidence 9999999999985
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-49 Score=398.06 Aligned_cols=277 Identities=61% Similarity=0.990 Sum_probs=257.4
Q ss_pred CCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChh
Q 008723 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (556)
Q Consensus 259 ~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGK 338 (556)
...++|+++++.||++||||+.||+.|..+|+|||+|+.... ....+.+.+.+|||.||+||||
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----------------~~~dvEL~KSNILLiGPTGsGK 110 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----------------DNDDVELSKSNILLIGPTGSGK 110 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----------------CCCceeeeeccEEEECCCCCcH
Confidence 357899999999999999999999999999999999986443 1123777889999999999999
Q ss_pred HHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 339 TtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
|+||+.||+.++.||...|++.+++.||+|+++|.++.++++.+++.++.++.+||||||||+++...+...+.+++|++
T Consensus 111 TlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGE 190 (408)
T COG1219 111 TLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGE 190 (408)
T ss_pred HHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhH
Q 008723 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~ 498 (556)
+||++||++|||++.++|-+|.|+++.-+.+.+||+||+|||.++|..|++++..|.-.+.|+|+...... ..+.
T Consensus 191 GVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~-----~~~~ 265 (408)
T COG1219 191 GVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK-----SKKK 265 (408)
T ss_pred HHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch-----hhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999876432 1223
Q ss_pred hHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhhcC
Q 008723 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQITFY 556 (556)
Q Consensus 499 ~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy~~ 556 (556)
....+++.++++|+++.+++|||++|++.+..+..|++++|++||++++|+|.|||++
T Consensus 266 ~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~ 323 (408)
T COG1219 266 EEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK 323 (408)
T ss_pred hHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999974
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=5.3e-38 Score=336.46 Aligned_cols=275 Identities=64% Similarity=1.012 Sum_probs=239.1
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
+++|+++.+.|+++|+||+.||+.|..++++||+++...... ...+..+..++||+||||||||+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~---------------~~~~~~~~~~iLl~Gp~GtGKT~ 123 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK---------------DDDVELQKSNILLIGPTGSGKTL 123 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc---------------ccccccCCceEEEEcCCCCCHHH
Confidence 689999999999999999999999999999999987443110 01344456899999999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..+..++..+...++.+.++||||||||++...+.+..+.++++++++
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~v 203 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGV 203 (412)
T ss_pred HHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHH
Confidence 99999999999999999999988899999988888888877777777788999999999999887666667788899999
Q ss_pred HHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhH
Q 008723 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (556)
Q Consensus 421 ~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~ 500 (556)
|+.||++|||..+.+++.+.++.+....++++|+|++|||+++|..+++++.+|.....++|....... ......
T Consensus 204 Q~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~-----~~~~~~ 278 (412)
T PRK05342 204 QQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK-----KEKRTE 278 (412)
T ss_pred HHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc-----cccchh
Confidence 999999999999999988888888889999999999999999999999999998888899997543211 011112
Q ss_pred HHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhhc
Q 008723 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQITF 555 (556)
Q Consensus 501 ~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy~ 555 (556)
..+++.+.++|+.+++|.|||++|+|.++.|.+|++++|.+|++++++.+.+||+
T Consensus 279 ~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~ 333 (412)
T PRK05342 279 GELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQ 333 (412)
T ss_pred HHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999999999999999999885
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3.9e-37 Score=328.75 Aligned_cols=275 Identities=64% Similarity=1.001 Sum_probs=237.3
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
+++|+++...|+++|+||++||+.|..++++||+++....... ....++..+.++||+||||||||+
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-------------~~~~~~~~~~~iLL~GP~GsGKT~ 131 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-------------SDNGVELSKSNILLIGPTGSGKTL 131 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc-------------cccccccCCceEEEECCCCcCHHH
Confidence 6799999999999999999999999999999999874310000 001234456899999999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
+|++||+.++.+|+.++++.+...+|+|++.+..+..++..+.+.+..++++||||||||+++.++++..++++++++++
T Consensus 132 lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~v 211 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGV 211 (413)
T ss_pred HHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhH
Confidence 99999999999999999999887889999878888888887777777788999999999999998887888899999999
Q ss_pred HHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhH
Q 008723 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (556)
Q Consensus 421 ~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~ 500 (556)
|+.||++|||..+.++..+.++.+....++++|+|++|||+++|..+++++..+.....++|....... ....
T Consensus 212 q~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~-------~~~~ 284 (413)
T TIGR00382 212 QQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK-------SKEK 284 (413)
T ss_pred HHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc-------chhh
Confidence 999999999999998888888888889999999999999999999999999887777788997532111 1122
Q ss_pred HHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhhc
Q 008723 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQITF 555 (556)
Q Consensus 501 ~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy~ 555 (556)
..+++.+..+|+.+++|.|||++|+|.++.|.+|++++|.+|++++++++.+||+
T Consensus 285 ~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~ 339 (413)
T TIGR00382 285 ADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQ 339 (413)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567777889999999999999999999999999999999999999999999985
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.97 E-value=1.3e-30 Score=276.33 Aligned_cols=218 Identities=47% Similarity=0.725 Sum_probs=181.8
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
+|+++...|+++|+||++||+.|..++++||++.... .. .. -...+.+|||+||||||||++|
T Consensus 2 tP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~---~~-------------~~-~e~~p~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLN---EE-------------LK-DEVTPKNILMIGPTGVGKTEIA 64 (441)
T ss_pred CHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccc---cc-------------cc-cccCCceEEEECCCCCCHHHHH
Confidence 7999999999999999999999999999999885321 11 00 1234589999999999999999
Q ss_pred HHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhc---------------------------------cc-----
Q 008723 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA---------------------------------EF----- 384 (556)
Q Consensus 343 raLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a---------------------------------~~----- 384 (556)
++||+.++.+|+.++++.+.+.+|+|.+.+..++.+|..+ ..
T Consensus 65 raLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~ 144 (441)
T TIGR00390 65 RRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTE 144 (441)
T ss_pred HHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 9999999999999999998877899987788887777654 00
Q ss_pred ----------------------------ch--------------------------------------------------
Q 008723 385 ----------------------------NV-------------------------------------------------- 386 (556)
Q Consensus 385 ----------------------------~l-------------------------------------------------- 386 (556)
.+
T Consensus 145 ~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~ 224 (441)
T TIGR00390 145 QQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALI 224 (441)
T ss_pred cccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHH
Confidence 00
Q ss_pred ------------------h-ccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCC
Q 008723 387 ------------------E-AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD 447 (556)
Q Consensus 387 ------------------~-~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~ 447 (556)
. ..+.+||||||||+++... ...+.++|+++||+.||.+|||..+++ .
T Consensus 225 ~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~-----------k 291 (441)
T TIGR00390 225 AEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT-----------K 291 (441)
T ss_pred HHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee-----------c
Confidence 0 2477999999999998764 345789999999999999999988875 2
Q ss_pred ceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCc
Q 008723 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (556)
Q Consensus 448 ~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~ 527 (556)
...|+|++|+|||+++|... ++.| ++|||++|||.
T Consensus 292 ~~~v~T~~ILFI~~GAF~~~----------------------------------------kp~D-----lIPEl~GR~Pi 326 (441)
T TIGR00390 292 YGMVKTDHILFIAAGAFQLA----------------------------------------KPSD-----LIPELQGRFPI 326 (441)
T ss_pred ceeEECCceeEEecCCcCCC----------------------------------------Chhh-----ccHHHhCccce
Confidence 24799999999999998631 1223 68999999999
Q ss_pred eeeCCCCCHHHHHHHHhhhHHHHhhhhc
Q 008723 528 LVSLTALTEDQLVKVLTEPKNALGQITF 555 (556)
Q Consensus 528 iI~f~~ls~eeL~qIl~~~~~~l~kqy~ 555 (556)
++.|.+|++++|++||+++.++|.+||+
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~ 354 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYK 354 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHH
Confidence 9999999999999999999999999997
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.97 E-value=3.9e-30 Score=272.78 Aligned_cols=220 Identities=45% Similarity=0.712 Sum_probs=182.8
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
.+|+++.+.|+++|+||++||+.|..++.++|++.... .. ......+.++||+||||||||++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~---~~--------------~~~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLP---EE--------------LRDEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCC---cc--------------cccccCCceEEEECCCCCCHHHH
Confidence 58999999999999999999999999999988774211 10 01112358999999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcc--------------------------------------
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAE-------------------------------------- 383 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~-------------------------------------- 383 (556)
|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+.
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~ 146 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEE 146 (443)
T ss_pred HHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcccc
Confidence 999999999999999999999889999887888888876660
Q ss_pred --------------------------------c--------c--------------------------------------
Q 008723 384 --------------------------------F--------N-------------------------------------- 385 (556)
Q Consensus 384 --------------------------------~--------~-------------------------------------- 385 (556)
. .
T Consensus 147 ~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~ 226 (443)
T PRK05201 147 EEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILI 226 (443)
T ss_pred ccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHH
Confidence 0 0
Q ss_pred -----------------hhc-cCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCC
Q 008723 386 -----------------VEA-AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD 447 (556)
Q Consensus 386 -----------------l~~-a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~ 447 (556)
+.. .+.+||||||||++....++ .+.++|+++||+.||.+|||..+++ .
T Consensus 227 ~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~-----------k 293 (443)
T PRK05201 227 EEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST-----------K 293 (443)
T ss_pred HHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee-----------c
Confidence 111 36789999999999876433 4789999999999999999988875 2
Q ss_pred ceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCc
Q 008723 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (556)
Q Consensus 448 ~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~ 527 (556)
...|+|++|+|||+++|... ++.| +.|||++|||.
T Consensus 294 ~~~i~T~~ILFI~~GAF~~~----------------------------------------kp~D-----lIPEl~GR~Pi 328 (443)
T PRK05201 294 YGMVKTDHILFIASGAFHVS----------------------------------------KPSD-----LIPELQGRFPI 328 (443)
T ss_pred ceeEECCceeEEecCCcCCC----------------------------------------Chhh-----ccHHHhCccce
Confidence 24799999999999998521 1122 67999999999
Q ss_pred eeeCCCCCHHHHHHHHhhhHHHHhhhhcC
Q 008723 528 LVSLTALTEDQLVKVLTEPKNALGQITFY 556 (556)
Q Consensus 528 iI~f~~ls~eeL~qIl~~~~~~l~kqy~~ 556 (556)
++.|.+|++++|++||+++.++|.+||++
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~ 357 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQA 357 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHH
Confidence 99999999999999999999999999973
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.6e-27 Score=237.19 Aligned_cols=219 Identities=44% Similarity=0.701 Sum_probs=179.9
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
.+|+++..+||++||||++||+.+..++.|+|.|..-..- -+-...+++||+.||+|+|||.+
T Consensus 4 ~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~-----------------lr~EV~PKNILMIGpTGVGKTEI 66 (444)
T COG1220 4 MTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE-----------------LRDEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_pred CCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH-----------------HhhccCccceEEECCCCCcHHHH
Confidence 5899999999999999999999999999999987532210 11123468999999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhccc-------------------------------------
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF------------------------------------- 384 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~------------------------------------- 384 (556)
||.||+..+.||+.+.++.+++.||+|.+++++++.+.+.+..
T Consensus 67 ARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~ 146 (444)
T COG1220 67 ARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQS 146 (444)
T ss_pred HHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC
Confidence 9999999999999999999999999999999888876652100
Q ss_pred --------------------------------------------------------------------------------
Q 008723 385 -------------------------------------------------------------------------------- 384 (556)
Q Consensus 385 -------------------------------------------------------------------------------- 384 (556)
T Consensus 147 ~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L 226 (444)
T COG1220 147 ENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLL 226 (444)
T ss_pred cccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHH
Confidence
Q ss_pred -----------------ch-hccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCC
Q 008723 385 -----------------NV-EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG 446 (556)
Q Consensus 385 -----------------~l-~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~ 446 (556)
.+ ...+.+||||||||+++.... ..+.++|+++||.-||.++||..+..-..
T Consensus 227 ~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~TKyG-------- 296 (444)
T COG1220 227 IEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVSTKYG-------- 296 (444)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeecccc--------
Confidence 00 123668999999999987532 23348999999999999999987754111
Q ss_pred CceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCC
Q 008723 447 DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP 526 (556)
Q Consensus 447 ~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~ 526 (556)
.+.|.+|+||++++|.-. ++.| ++|||.+|||
T Consensus 297 ---~VkTdHILFIasGAFh~s----------------------------------------KPSD-----LiPELQGRfP 328 (444)
T COG1220 297 ---PVKTDHILFIASGAFHVA----------------------------------------KPSD-----LIPELQGRFP 328 (444)
T ss_pred ---ccccceEEEEecCceecC----------------------------------------Chhh-----cChhhcCCCc
Confidence 468899999999997521 2223 6899999999
Q ss_pred ceeeCCCCCHHHHHHHHhhhHHHHhhhhc
Q 008723 527 ILVSLTALTEDQLVKVLTEPKNALGQITF 555 (556)
Q Consensus 527 ~iI~f~~ls~eeL~qIl~~~~~~l~kqy~ 555 (556)
+.|.|.+|+.+++.+||+++.++|.|||.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~ 357 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYK 357 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHH
Confidence 99999999999999999999999999995
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=224.25 Aligned_cols=169 Identities=27% Similarity=0.464 Sum_probs=135.8
Q ss_pred ccChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~--~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
|.|+++||+.|.++|... +...|.. +..+.++||++||||||||+||||+|.+++..
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~G---------------------irrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKG---------------------IRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhh---------------------cccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 899999999999999754 2223333 33455999999999999999999999999999
Q ss_pred eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 353 fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
|+.|+.+.++ ++|.|++ |++++-+|+.+++. .|++|||||||.|+..|++. +.+.+.+++.+.||..|||..
T Consensus 273 FFNVSsstlt-SKwRGeS-EKlvRlLFemARfy----APStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 273 FFNVSSSTLT-SKWRGES-EKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred EEEechhhhh-hhhccch-HHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccc
Confidence 9999999998 5799999 99999999999877 89999999999999987654 455666789999999999733
Q ss_pred cccCCCCcccCCCCCceEEecCceEEEe-cCCCc-ChHHHHHhcccccccccCChhhhh
Q 008723 433 VNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFV-DLEKTISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 433 v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~-dl~~~i~~rr~~~~i~f~~p~~~~ 489 (556)
-. .+.+.++||+ ++|+. |+|+++ +|||.+.|+.++|+.+.
T Consensus 345 ~t----------------~e~~k~VmVLAATN~PWdiDEAl-rRRlEKRIyIPLP~~~~ 386 (491)
T KOG0738|consen 345 GT----------------LENSKVVMVLAATNFPWDIDEAL-RRRLEKRIYIPLPDAEA 386 (491)
T ss_pred cc----------------cccceeEEEEeccCCCcchHHHH-HHHHhhheeeeCCCHHH
Confidence 22 2233444444 66666 455555 57899999999998655
No 9
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=245.24 Aligned_cols=231 Identities=25% Similarity=0.397 Sum_probs=176.0
Q ss_pred CCCCCCCCCCCCCCChH----HHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~~p~----el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
+++|+++++.+.....+ .+.+.|.+.|+||++|++.|..+|... .+++. ....|
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra-----RaGL~-----------------dp~rP 520 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA-----RAGLG-----------------DPNRP 520 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH-----hcCCC-----------------CCCCC
Confidence 57899999986554444 588888899999999999999999633 22221 11224
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
....||.||+|+|||.+||+||..+. ..++++|++++.+. ||+|+++...+++..+..+
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~P------- 593 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKP------- 593 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCC-------
Confidence 46889999999999999999999996 68999999987753 8999998788877766543
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~ 469 (556)
.+||+||||++.+++ |++.||++|| |+++. ..+..+|++|.++|+|+|- ....
T Consensus 594 ySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD-----------~~Gr~VdFrNtiIImTSN~-Gs~~ 647 (786)
T COG0542 594 YSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTD-----------GQGRTVDFRNTIIIMTSNA-GSEE 647 (786)
T ss_pred CeEEEechhhhcCHH--------------HHHHHHHHhcCCeeec-----------CCCCEEecceeEEEEeccc-chHH
Confidence 579999999999999 9999999999 66653 2345789999999999984 3333
Q ss_pred HHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 470 ~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
+... ..+ .. ...++...+.+++. ++..|.|||++|+|.+|.|.+|+.+++.+|++..+..
T Consensus 648 i~~~------~~~--~~------~~~~~~~~~~v~~~------l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 648 ILRD------ADG--DD------FADKEALKEAVMEE------LKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHhh------ccc--cc------cchhhhHHHHHHHH------HHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 3222 111 00 01122333334433 3455999999999999999999999999999999988
Q ss_pred Hhhhh
Q 008723 550 LGQIT 554 (556)
Q Consensus 550 l~kqy 554 (556)
+.++.
T Consensus 708 l~~~L 712 (786)
T COG0542 708 LAKRL 712 (786)
T ss_pred HHHHH
Confidence 88765
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-23 Score=216.47 Aligned_cols=173 Identities=27% Similarity=0.384 Sum_probs=136.9
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.++ |-|+++.++.|+++|....+ +..+...+ -..++++||||||||||||+||||+|+..+
T Consensus 150 Y~d-IGGL~~Qi~EirE~VELPL~---~PElF~~~---------------GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 150 YED-IGGLDEQIQEIREVVELPLK---NPELFEEL---------------GIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred hhh-ccCHHHHHHHHHHHhccccc---CHHHHHHc---------------CCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 344 89999999999999985432 22222222 233579999999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE- 429 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE- 429 (556)
..|+++.++++++ +|+|+. .+.++++|..|... .|+||||||||++...|-....+.+ ++||.+|+++|.
T Consensus 211 AtFIrvvgSElVq-KYiGEG-aRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL~q 281 (406)
T COG1222 211 ATFIRVVGSELVQ-KYIGEG-ARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELLNQ 281 (406)
T ss_pred ceEEEeccHHHHH-HHhccc-hHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCch---HHHHHHHHHHHHh
Confidence 9999999999995 599999 89999999998855 8999999999999988765544433 458887777764
Q ss_pred --ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhhh
Q 008723 430 --GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 --g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~~ 490 (556)
|+ + ...|+-+|+|+|..|+.| +++.+||+..|.|++|+.+..
T Consensus 282 lDGF---------------D----~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 282 LDGF---------------D----PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred ccCC---------------C----CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHH
Confidence 31 0 234677888888888544 567799999999999986653
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-22 Score=222.43 Aligned_cols=170 Identities=27% Similarity=0.325 Sum_probs=137.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++++|+.|+++|.+..+. ... ..+....++++|||+||||||||++||+||++.+.+|+
T Consensus 436 IGGlE~lK~elq~~V~~p~~~---pe~---------------F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKH---PEK---------------FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhc---hHH---------------HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 788999999999999854322 111 11222346799999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.|.+.++. +.|+|++ |+.++++|++++.. .++||||||||.+..+|.+ +.+ ...++++++||..|||.
T Consensus 498 svkgpEL~-sk~vGeS-Er~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g-~~~--~v~~RVlsqLLtEmDG~--- 565 (693)
T KOG0730|consen 498 SVKGPELF-SKYVGES-ERAIREVFRKARQV----APCIIFFDEIDALAGSRGG-SSS--GVTDRVLSQLLTEMDGL--- 565 (693)
T ss_pred eccCHHHH-HHhcCch-HHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCC-Ccc--chHHHHHHHHHHHcccc---
Confidence 99999999 4699999 99999999999844 7899999999999998863 333 23466999999999972
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~~ 490 (556)
...+++++|+++|..++.| +++.+|+++.|++++|+.+..
T Consensus 566 ----------------e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 566 ----------------EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred ----------------cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence 2346888999999888755 345579999999999997653
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-22 Score=221.69 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=158.7
Q ss_pred HhhhccChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~--rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+++ |-|.+++|..|.+.|....+ .++...+++ ..+||||||||||||++|||+|.+
T Consensus 671 WdD-VGGLeevK~eIldTIqlPL~hpeLfssglrk---------------------RSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 671 WDD-VGGLEEVKTEILDTIQLPLKHPELFSSGLRK---------------------RSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred hhc-ccCHHHHHHHHHHHhcCcccChhhhhccccc---------------------cceeEEECCCCCchHHHHHHHHhh
Confidence 344 89999999999999975322 233333332 378999999999999999999999
Q ss_pred hCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 349 l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
+...|+.|.+.++... |+|++ |+.++++|++|+ .+.||||||||+|.+++.|+....+..+. +++..+||..|
T Consensus 729 csL~FlSVKGPELLNM-YVGqS-E~NVR~VFerAR----~A~PCVIFFDELDSlAP~RG~sGDSGGVM-DRVVSQLLAEL 801 (953)
T KOG0736|consen 729 CSLNFLSVKGPELLNM-YVGQS-EENVREVFERAR----SAAPCVIFFDELDSLAPNRGRSGDSGGVM-DRVVSQLLAEL 801 (953)
T ss_pred ceeeEEeecCHHHHHH-Hhcch-HHHHHHHHHHhh----ccCCeEEEeccccccCccCCCCCCccccH-HHHHHHHHHHh
Confidence 9999999999999955 99999 899999999988 45999999999999999987665555554 45999999999
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhhhccccchhHhHHHHHhh
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~ 506 (556)
||-.. -+.+++.+|.|+|..||.| +++.+|||+-++.+.+..++ .+..++++
T Consensus 802 Dgls~-----------------~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e---------sk~~vL~A 855 (953)
T KOG0736|consen 802 DGLSD-----------------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE---------SKLRVLEA 855 (953)
T ss_pred hcccC-----------------CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH---------HHHHHHHH
Confidence 96211 0456677888999999865 57789999988888775433 23344444
Q ss_pred cCchHHHHcC-CCHHHhccCCceeeCCCCCHHHHHHHHhhh
Q 008723 507 VESSDLIAYG-LIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (556)
Q Consensus 507 l~~~dl~~~~-l~Pell~R~~~iI~f~~ls~eeL~qIl~~~ 546 (556)
+...--+... -.-|+..+.+ +.++=.|+..|+.+.
T Consensus 856 lTrkFkLdedVdL~eiAk~cp-----~~~TGADlYsLCSdA 891 (953)
T KOG0736|consen 856 LTRKFKLDEDVDLVEIAKKCP-----PNMTGADLYSLCSDA 891 (953)
T ss_pred HHHHccCCCCcCHHHHHhhCC-----cCCchhHHHHHHHHH
Confidence 4322111111 1234444444 456777777777544
No 13
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=223.52 Aligned_cols=228 Identities=21% Similarity=0.319 Sum_probs=163.9
Q ss_pred CCCCCCCCCCCCCCC----hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~~----p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
+++|+++++...... ...+.+.|.+.|+||++|++.|..+|......+ . ....+
T Consensus 430 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl-----~-----------------~~~kp 487 (758)
T PRK11034 430 VARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGL-----G-----------------HEHKP 487 (758)
T ss_pred HHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccc-----c-----------------CCCCC
Confidence 567888887764433 345888888899999999999999986432111 0 00123
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccc-----------cCccccchHHHHHHHHHhcccchhccCCeE
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~-----------sgyvG~~~e~~l~~lf~~a~~~l~~a~~~V 393 (556)
..++||+||||||||++|++||+.++.+|+.++++++.+ .+|+|......+.+.+.. ...+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~-------~p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh-------CCCcE
Confidence 367999999999999999999999999999999987643 246665544445444332 24589
Q ss_pred EEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHH
Q 008723 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (556)
Q Consensus 394 LfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~ 472 (556)
|||||||+++++ +++.|+++|| |.++. . .+..++++|++||+|+|. ..+.+..
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~G~ltd--~---------~g~~vd~rn~iiI~TsN~-g~~~~~~ 614 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDNGTLTD--N---------NGRKADFRNVVLVMTTNA-GVRETER 614 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhcCeeec--C---------CCceecCCCcEEEEeCCc-CHHHHhh
Confidence 999999999887 9999999999 44442 1 223679999999999984 3433322
Q ss_pred hcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 473 ~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
..++|..... ....+ +.++..|.|||++|||.+|.|.+|+.+++.+|+...+..+.+
T Consensus 615 -----~~~g~~~~~~------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~ 671 (758)
T PRK11034 615 -----KSIGLIHQDN------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQA 671 (758)
T ss_pred -----cccCcccchh------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3455542110 00111 223455999999999999999999999999999888877766
Q ss_pred hh
Q 008723 553 IT 554 (556)
Q Consensus 553 qy 554 (556)
++
T Consensus 672 ~l 673 (758)
T PRK11034 672 QL 673 (758)
T ss_pred HH
Confidence 65
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=3.6e-22 Score=198.08 Aligned_cols=171 Identities=31% Similarity=0.451 Sum_probs=138.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ||||++||+.-...+. |.+ ....+.+| .+++|||+||||||||++||+||++.
T Consensus 119 t~dd-ViGqEeAK~kcrli~~--yLe-nPe~Fg~W-------------------APknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 119 TLDD-VIGQEEAKRKCRLIME--YLE-NPERFGDW-------------------APKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cHhh-hhchHHHHHHHHHHHH--Hhh-ChHHhccc-------------------CcceeEEECCCCccHHHHHHHHhccc
Confidence 3555 8999999987655443 221 11222233 46899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.||+.+.++++... |+|.. .+.++++++.+.. ..|||+||||+|.+.-+|+-.+.-.++|. +.|+||..||
T Consensus 176 kvp~l~vkat~liGe-hVGdg-ar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTelD 247 (368)
T COG1223 176 KVPLLLVKATELIGE-HVGDG-ARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELD 247 (368)
T ss_pred CCceEEechHHHHHH-HhhhH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhcc
Confidence 999999999999965 88887 7889999988874 48999999999999999988777777764 8999999999
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~ 490 (556)
|. .....++.|+++|..++.+...+.||...|.|.+|+.++.
T Consensus 248 gi-------------------~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr 289 (368)
T COG1223 248 GI-------------------KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEER 289 (368)
T ss_pred Cc-------------------ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHH
Confidence 62 1334477899999999888777889999999999986654
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=211.89 Aligned_cols=169 Identities=27% Similarity=0.407 Sum_probs=137.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|-++++++.+|..+|.+..++ ....+.+|. ..+.+|||+||||||||+||||+|++.+..|+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~---pd~~k~lGi---------------~~PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKR---PDLFKALGI---------------DAPSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred cccHHHHHHHHHHHHhhhccC---HHHHHHhCC---------------CCCCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 899999999999999865433 222222222 23589999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.|...+++. .|+|++ |..++.+|..++.. .||||||||||.|.+.|.... ..+..++.++||..|||
T Consensus 575 sVKGPELlN-kYVGES-ErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDG---- 641 (802)
T KOG0733|consen 575 SVKGPELLN-KYVGES-ERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDG---- 641 (802)
T ss_pred eecCHHHHH-HHhhhH-HHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcc----
Confidence 999999994 599999 99999999998854 899999999999999876543 22335699999999996
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~ 489 (556)
.-+-+.+.+|+++|..|+.+ +++.+|+++.++.+.|.-++
T Consensus 642 ---------------l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 642 ---------------LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred ---------------cccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 12445677888999998765 56789999999999997554
No 16
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=195.96 Aligned_cols=166 Identities=25% Similarity=0.407 Sum_probs=131.9
Q ss_pred ccChHHHHHHHHHHHHHH--HHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~--~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
|.|++.||++|.++|... +..++...+..+ ++|||+|||||||+.||+++|.+.+..
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw---------------------rgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPW---------------------RGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcc---------------------eeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 899999999999999753 445555544444 899999999999999999999999999
Q ss_pred eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 353 fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
|+.|+.++++ ++|+|++ ++.+..+|+.++.+ .|+||||||||.++..|...+ ..+.+++...||-.|.|.
T Consensus 194 FFSvSSSDLv-SKWmGES-EkLVknLFemARe~----kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGV- 263 (439)
T KOG0739|consen 194 FFSVSSSDLV-SKWMGES-EKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGV- 263 (439)
T ss_pred eEEeehHHHH-HHHhccH-HHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhcc-
Confidence 9999999999 5699999 89999999998855 899999999999988765432 223366888888888751
Q ss_pred cccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhh
Q 008723 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (556)
Q Consensus 433 v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~ 488 (556)
-.|...++++.++|..-..+...+|||.+.|+.++|...
T Consensus 264 -----------------G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 264 -----------------GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred -----------------ccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHH
Confidence 123444556666666655555567899999999999743
No 17
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.1e-21 Score=203.71 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=158.6
Q ss_pred ChHHH-HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 263 TPKEI-CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 263 ~p~el-~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
.|... ...+++ |.|.|+||.+|.+.|. |.+ .......+| ..-+++|||+||||||||+|
T Consensus 294 ~p~~~~nv~F~d-VkG~DEAK~ELeEiVe--fLk--dP~kftrLG---------------GKLPKGVLLvGPPGTGKTlL 353 (752)
T KOG0734|consen 294 DPEQMKNVTFED-VKGVDEAKQELEEIVE--FLK--DPTKFTRLG---------------GKLPKGVLLVGPPGTGKTLL 353 (752)
T ss_pred Chhhhccccccc-ccChHHHHHHHHHHHH--Hhc--CcHHhhhcc---------------CcCCCceEEeCCCCCchhHH
Confidence 34443 445666 8999999999999986 222 111111111 22358899999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHH
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~ 421 (556)
||++|.+.+.||+....+++.+. |+|.. .+.++.+|..+... .||||||||||.+..+|.....+ .....+
T Consensus 354 ARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk~~----APcIIFIDEiDavG~kR~~~~~~---y~kqTl 424 (752)
T KOG0734|consen 354 ARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAKAR----APCIIFIDEIDAVGGKRNPSDQH---YAKQTL 424 (752)
T ss_pred HHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHHhc----CCeEEEEechhhhcccCCccHHH---HHHHHH
Confidence 99999999999999999999866 99998 88999999988744 89999999999999887765543 235589
Q ss_pred HHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHH-HHhcccccccccCChhhhhhccccchhHh
Q 008723 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKT-ISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (556)
Q Consensus 422 ~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~-i~~rr~~~~i~f~~p~~~~~~~~~~~~~~ 499 (556)
++||..|||+..+ ..|++|.++|+.+ ||++ ++.+||+..+..+.|+..-. .++
T Consensus 425 NQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR------~eI 479 (752)
T KOG0734|consen 425 NQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGR------TEI 479 (752)
T ss_pred HHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccH------HHH
Confidence 9999999974332 2467888888886 5554 57789999999999985542 233
Q ss_pred HHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHH
Q 008723 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (556)
Q Consensus 500 ~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl 543 (556)
....+..+. ....++|.++.|=. +.|+=.||..++
T Consensus 480 L~~yl~ki~----~~~~VD~~iiARGT-----~GFsGAdLaNlV 514 (752)
T KOG0734|consen 480 LKLYLSKIP----LDEDVDPKIIARGT-----PGFSGADLANLV 514 (752)
T ss_pred HHHHHhcCC----cccCCCHhHhccCC-----CCCchHHHHHHH
Confidence 333333331 12236788777743 566666666554
No 18
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.85 E-value=1.3e-20 Score=218.68 Aligned_cols=240 Identities=22% Similarity=0.315 Sum_probs=167.4
Q ss_pred CCCCCCCCCCCCCCC----hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~~----p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
++.|+++++...... ...+.+.|.+.|+||++|++.|..++......+.. ...+
T Consensus 481 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~----------------------~~~p 538 (821)
T CHL00095 481 VSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKN----------------------PNRP 538 (821)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccC----------------------CCCC
Confidence 578999998775433 34588999999999999999999998643222110 0112
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccc-----------cCccccchHHHHHHHHHhcccchhccC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~-----------sgyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
...+||+||+|||||++|++||+.+ ..++++++++++.+ .+|+|.+....+.+.+... .
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~-------p 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK-------P 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhC-------C
Confidence 2468999999999999999999988 35789999887532 3577776555555544332 3
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~ 469 (556)
.+||+|||||++++. +++.|+++|| |.++. ..+..+++++++||+|+|... +
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d-----------~~g~~v~~~~~i~I~Tsn~g~--~ 664 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTD-----------SKGRTIDFKNTLIIMTSNLGS--K 664 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhccCceec-----------CCCcEEecCceEEEEeCCcch--H
Confidence 479999999999988 9999999999 54442 123468999999999999642 2
Q ss_pred HHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 470 ~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
.+.. ....++|....... ....++.+...+.+ + ++..|.|||++|+|.+|.|.+|+.+++.+|+...+..
T Consensus 665 ~i~~--~~~~~gf~~~~~~~--~~~~~~~~~~~~~~-----~-~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 665 VIET--NSGGLGFELSENQL--SEKQYKRLSNLVNE-----E-LKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHHh--hccccCCccccccc--ccccHHHHHHHHHH-----H-HHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2221 12345665322110 00012222222222 2 3344999999999999999999999999999988888
Q ss_pred Hhhhh
Q 008723 550 LGQIT 554 (556)
Q Consensus 550 l~kqy 554 (556)
+.+++
T Consensus 735 l~~rl 739 (821)
T CHL00095 735 LFKRL 739 (821)
T ss_pred HHHHH
Confidence 76543
No 19
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=1e-20 Score=217.11 Aligned_cols=228 Identities=24% Similarity=0.358 Sum_probs=163.0
Q ss_pred CCCCCCCCCCCC----CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGED----LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~----~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
++.|+++++... ......+.+.|.+.|+||+++++.|..++.... ..+. ....+
T Consensus 426 i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~-----~g~~-----------------~~~~p 483 (731)
T TIGR02639 426 VAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSR-----AGLG-----------------NPNKP 483 (731)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHh-----cCCC-----------------CCCCC
Confidence 456788876543 234557899999999999999999998885321 1110 00112
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccc-----------cCccccchHHHHHHHHHhcccchhccCCeE
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~-----------sgyvG~~~e~~l~~lf~~a~~~l~~a~~~V 393 (556)
..++||+||+|||||++|++||+.++.+++.++++++.+ .+|+|.+....+.+.+... ..+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeE
Confidence 356899999999999999999999999999999987643 3577776555555554432 4589
Q ss_pred EEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHH
Q 008723 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (556)
Q Consensus 394 LfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~ 472 (556)
|||||||+++++ +++.|+++|| |.++. ..+..+|++|.+||+|+|.. ...+.
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~g~~~d-----------~~g~~vd~~~~iii~Tsn~g-~~~~~- 609 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDYATLTD-----------NNGRKADFRNVILIMTSNAG-ASEMS- 609 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhccCeeec-----------CCCcccCCCCCEEEECCCcc-hhhhh-
Confidence 999999999988 9999999999 43331 12345799999999999853 22221
Q ss_pred hcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 473 ~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
...++|.... ..+.+ .+.++..|.|||++|||.++.|.+|+.+++.+|+...+..+.+
T Consensus 610 ----~~~~~f~~~~------------~~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 610 ----KPPIGFGSEN------------VESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred ----hccCCcchhh------------hHHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1234553211 01111 2234455999999999999999999999999999988887665
Q ss_pred hh
Q 008723 553 IT 554 (556)
Q Consensus 553 qy 554 (556)
++
T Consensus 668 ~l 669 (731)
T TIGR02639 668 QL 669 (731)
T ss_pred HH
Confidence 44
No 20
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-20 Score=202.45 Aligned_cols=176 Identities=28% Similarity=0.420 Sum_probs=136.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|.+ |-|.+.....|.+.+.. +.+......+| ..++++|||+||||||||++|++||.++
T Consensus 188 ~f~d-iGG~d~~~~el~~li~~----i~~Pe~~~~lG---------------v~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 188 SFSD-IGGLDKTLAELCELIIH----IKHPEVFSSLG---------------VRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred chhh-ccChHHHHHHHHHHHHH----hcCchhHhhcC---------------CCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 4555 79999999999998862 22332222222 3457999999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.||+.|++.+++ +++.|++ |+.++++|+.+..+ .|||+||||||.++++|+.. +++ ..++++.+||..||
T Consensus 248 ~vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~a--qre-MErRiVaQLlt~mD 318 (802)
T KOG0733|consen 248 GVPFLSISAPEIV-SGVSGES-EKKIRELFDQAKSN----APCIVFIDEIDAITPKREEA--QRE-MERRIVAQLLTSMD 318 (802)
T ss_pred CCceEeecchhhh-cccCccc-HHHHHHHHHHHhcc----CCeEEEeecccccccchhhH--HHH-HHHHHHHHHHHhhh
Confidence 9999999999999 6899999 88999999998754 89999999999999998752 222 33569999999999
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHHh-cccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISE-RRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~~-rr~~~~i~f~~p~~~~ 489 (556)
+-... ..++..+++|.|+|..|. +.++++ +||+..|-.+.|+...
T Consensus 319 ~l~~~---------------~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 319 ELSNE---------------KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred ccccc---------------ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 52110 113455788888888875 444433 6999999999998655
No 21
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=1.4e-19 Score=210.12 Aligned_cols=230 Identities=21% Similarity=0.340 Sum_probs=161.7
Q ss_pred CCCCCCCCCCCCCC----ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~----~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
+++|+++++.+... ....+.+.|.+.|+||+.|++.|..++..... .+.. ...+
T Consensus 538 v~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~-----gl~~-----------------~~~p 595 (852)
T TIGR03345 538 VADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA-----GLED-----------------PRKP 595 (852)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc-----CCCC-----------------CCCC
Confidence 56899999876543 34458899999999999999999999863211 1110 0122
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
...+||.||+|||||.+|++||+.+ ...|+.++++++.+. +|+|+.....+.+.+.. ..
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-------~p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-------KP 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-------CC
Confidence 3468999999999999999999999 347889998875432 67887655555554443 25
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~ 469 (556)
.+||+||||+++++. +++.|+++|| |.++. ..+..++++|.+||+|+|.. .+.
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d-----------~~Gr~vd~~n~iiI~TSNlg-~~~ 722 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMED-----------GEGREIDFKNTVILLTSNAG-SDL 722 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhhcceeec-----------CCCcEEeccccEEEEeCCCc-hHH
Confidence 679999999999887 9999999999 43331 23347899999999998853 222
Q ss_pred HHHhcccccccccC-ChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 470 TISERRQDSSIGFG-APVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 470 ~i~~rr~~~~i~f~-~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
.... .. .+. .+. .+.....+++. ++..|.|||++|++ +|.|.+|+.+++.+|+...+.
T Consensus 723 ~~~~-~~----~~~~~~~---------~~~~~~~~~~~------~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 723 IMAL-CA----DPETAPD---------PEALLEALRPE------LLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred HHHh-cc----CcccCcc---------hHHHHHHHHHH------HHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 2221 10 110 010 11122222222 23349999999997 899999999999999999988
Q ss_pred HHhhhh
Q 008723 549 ALGQIT 554 (556)
Q Consensus 549 ~l~kqy 554 (556)
.+.+++
T Consensus 782 ~l~~rl 787 (852)
T TIGR03345 782 RIARRL 787 (852)
T ss_pred HHHHHH
Confidence 876654
No 22
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=1.1e-18 Score=179.71 Aligned_cols=195 Identities=20% Similarity=0.265 Sum_probs=137.2
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHH-HHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~-~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
...+++.+.|++.++|++.+|+.|.+.+... +.++. ...|... ..+..|++|+||||||||+
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~-----~~~g~~~------------~~~~~~ill~G~pGtGKT~ 74 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLR-----KNLGLTS------------SNPGLHMSFTGSPGTGKTT 74 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH-----HHcCCCC------------CCCCceEEEECCCCCCHHH
Confidence 4577899999987999999999999887531 11111 1111110 1124679999999999999
Q ss_pred HHHHHHHHhC-------CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 341 LAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 341 lAraLA~~l~-------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
+|+++|+.+. .+++.++..++.. .|+|+. +..+..+++.+ .++||||||++.+...+...
T Consensus 75 lAr~la~~~~~~g~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~---- 141 (287)
T CHL00181 75 VALKMADILYKLGYIKKGHLLTVTRDDLVG-QYIGHT-APKTKEVLKKA-------MGGVLFIDEAYYLYKPDNER---- 141 (287)
T ss_pred HHHHHHHHHHHcCCCCCCceEEecHHHHHH-HHhccc-hHHHHHHHHHc-------cCCEEEEEccchhccCCCcc----
Confidence 9999998762 3688999888774 478877 34455666554 46799999999985432111
Q ss_pred cCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccc
Q 008723 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~ 493 (556)
+ ....+++.|+++||. ...++++|++++...++.+.
T Consensus 142 ~-~~~e~~~~L~~~me~---------------------~~~~~~vI~ag~~~~~~~~~---------------------- 177 (287)
T CHL00181 142 D-YGSEAIEILLQVMEN---------------------QRDDLVVIFAGYKDRMDKFY---------------------- 177 (287)
T ss_pred c-hHHHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHHH----------------------
Confidence 1 124589999999982 12456778877643322211
Q ss_pred cchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 494 ~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
.++|.|.+||+.++.|++++.+++.+|+.........
T Consensus 178 ----------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 178 ----------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred ----------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcC
Confidence 1469999999999999999999999999887766543
No 23
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=202.83 Aligned_cols=175 Identities=25% Similarity=0.354 Sum_probs=139.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|.++||+.|.+.|. |. .+. ..+.+.-+..++++||+||||||||+||||+|.+.
T Consensus 309 ~FkD-VAG~deAK~El~E~V~--fL--KNP---------------~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 309 KFKD-VAGVDEAKEELMEFVK--FL--KNP---------------EQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccc-ccCcHHHHHHHHHHHH--Hh--cCH---------------HHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 4455 8999999999999986 21 112 22333445567999999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhc-ccccccCchHHHHHHHHHHH
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~-~~~~~~~s~~~v~~~LL~~L 428 (556)
+.||+.++++++++. ++|.. ...++.+|..+..+ .|+||||||||.+...|.+ ...+.+..++..+++||..|
T Consensus 369 gVPF~svSGSEFvE~-~~g~~-asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 369 GVPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred CCceeeechHHHHHH-hcccc-hHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 999999999999975 77777 78899999988755 8999999999999988742 34455666788999999999
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhh
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~ 489 (556)
||... ++++++++++|..|..+ +++.+||+..|....|+...
T Consensus 443 Dgf~~-------------------~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 443 DGFET-------------------SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred cCCcC-------------------CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 97322 35578888888887543 46778999999999998554
No 24
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.80 E-value=4.9e-20 Score=176.07 Aligned_cols=166 Identities=39% Similarity=0.566 Sum_probs=118.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCC----CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
+..++||.||+|||||.+|++||+.+.. +++.++++++.+ +.+.+..+..++......+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3478999999999999999999999985 999999998875 22223345555655555555556679999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccc
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~ 479 (556)
|++++. ...++++++..+|+.||++||+..+.- .....++++|++||+|+|+.........+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d----------~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTD----------SYGRTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEE----------TTCCEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhcccceec----------ccceEEEeCCceEEEecccccchhhhhhccc---
Confidence 999985 345677888889999999999544431 1225799999999999999876544322111
Q ss_pred cccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCce
Q 008723 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL 528 (556)
Q Consensus 480 i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~i 528 (556)
. ...........++++++|.|||++||+.|
T Consensus 142 ----~---------------~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ----E---------------AIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ----T---------------CCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ----c---------------ccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0 00111112235667888999999999964
No 25
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=1.3e-18 Score=178.78 Aligned_cols=196 Identities=19% Similarity=0.282 Sum_probs=138.5
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHH-HHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKT 339 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~-~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKT 339 (556)
....+++.+.|++.++|++.+|+.|.+.+... +.++.. . .|.+ ...+..+++|+||||||||
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~---~--~g~~------------~~~~~~~vll~G~pGTGKT 72 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQ---R--LGLA------------SAAPTLHMSFTGNPGTGKT 72 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH---H--hCCC------------cCCCCceEEEEcCCCCCHH
Confidence 45678899999977999999999999887632 111111 0 1111 0113468999999999999
Q ss_pred HHHHHHHHHhC-------CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 340 LLAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 340 tlAraLA~~l~-------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
++|+++|+.+. .+|+.+++.++.. .|+|+. +..+.++|+.+ .++||||||++.+...+....
T Consensus 73 ~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~-- 141 (284)
T TIGR02880 73 TVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEILKRA-------MGGVLFIDEAYYLYRPDNERD-- 141 (284)
T ss_pred HHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccc-hHHHHHHHHHc-------cCcEEEEechhhhccCCCccc--
Confidence 99999998773 2799999988875 588877 44556666554 468999999998854321111
Q ss_pred ccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhcc
Q 008723 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~ 492 (556)
....+++.|+++|+. ...++++|++++...++.+
T Consensus 142 ---~~~~~~~~Ll~~le~---------------------~~~~~~vI~a~~~~~~~~~---------------------- 175 (284)
T TIGR02880 142 ---YGQEAIEILLQVMEN---------------------QRDDLVVILAGYKDRMDSF---------------------- 175 (284)
T ss_pred ---hHHHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHH----------------------
Confidence 123488999999982 1135677777764322111
Q ss_pred ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 493 ~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
+.++|.|.+||+..+.|++|+.+|+.+|+...+.....
T Consensus 176 ----------------------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~ 213 (284)
T TIGR02880 176 ----------------------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQY 213 (284)
T ss_pred ----------------------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhcc
Confidence 11579999999999999999999999999887766543
No 26
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-19 Score=175.83 Aligned_cols=170 Identities=31% Similarity=0.451 Sum_probs=132.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++--|..+++++... +.+..+.+.+| ..+++++||+||||||||++||++|+.....|+
T Consensus 157 iggld~qkqeireavelp---lt~~~ly~qig---------------idpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELP---LTHADLYKQIG---------------IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred cccchhhHHHHHHHHhcc---chHHHHHHHhC---------------CCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 789999999999999743 23334433333 235699999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH---hcc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EGT 431 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L---Eg~ 431 (556)
++..++++. +|.|+. .+.++.+|+.+..+ .++||||||||.+..+|-....+.+ +++|..|+++| ||+
T Consensus 219 rvvgsefvq-kylgeg-prmvrdvfrlaken----apsiifideidaiatkrfdaqtgad---revqril~ellnqmdgf 289 (408)
T KOG0727|consen 219 RVVGSEFVQ-KYLGEG-PRMVRDVFRLAKEN----APSIIFIDEIDAIATKRFDAQTGAD---REVQRILIELLNQMDGF 289 (408)
T ss_pred eeccHHHHH-HHhccC-cHHHHHHHHHHhcc----CCcEEEeehhhhHhhhhcccccccc---HHHHHHHHHHHHhccCc
Confidence 999999995 599998 78999999988755 8999999999999888765555544 44666666654 431
Q ss_pred ccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHH-HHHhcccccccccCChhhhhh
Q 008723 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEK-TISERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 432 ~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~-~i~~rr~~~~i~f~~p~~~~~ 490 (556)
- .+.|+-+|+++|..| ++. +++.+|.+..|+|++|++.+.
T Consensus 290 d-------------------q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727|consen 290 D-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred C-------------------cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhh
Confidence 1 345777888888777 443 567789999999999997654
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.2e-18 Score=171.80 Aligned_cols=170 Identities=28% Similarity=0.469 Sum_probs=109.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ++||+++++.+...+.....+ . ....|+||+||||+||||+|+.||+++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r-------~-------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR-------G-------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT-------T-------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc-------C-------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 4566 699999999988776522100 0 123689999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|..+++..+.. ...+..++... ..+.||||||||++.+. +|+.|+..||
T Consensus 75 ~~~~~~~sg~~i~k--------~~dl~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEK--------AGDLAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--S--------CHHHHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhh--------HHHHHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 99998887754432 12233333322 25679999999999988 9999999999
Q ss_pred ccccc-cCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcC
Q 008723 430 GTIVN-VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (556)
Q Consensus 430 g~~v~-ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~ 508 (556)
...+. +-..+ .....+.++...+.+|.|++...+
T Consensus 127 d~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g~----------------------------------------- 161 (233)
T PF05496_consen 127 DGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAGL----------------------------------------- 161 (233)
T ss_dssp CSEEEEEBSSS----SS-BEEEEE----EEEEEESSGCC-----------------------------------------
T ss_pred cCeEEEEeccc----cccceeeccCCCceEeeeeccccc-----------------------------------------
Confidence 55442 21221 334567788888889988875322
Q ss_pred chHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhH
Q 008723 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPK 547 (556)
Q Consensus 509 ~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~ 547 (556)
+.+.|.+||..+..++.++.+||.+|+.+..
T Consensus 162 --------ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 162 --------LSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp --------TSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred --------cchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 6789999999999999999999999997543
No 28
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.79 E-value=3e-18 Score=199.61 Aligned_cols=227 Identities=25% Similarity=0.374 Sum_probs=158.1
Q ss_pred CCCCCCCCCCCCCC----ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~----~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
++.|+++++..... ....+.+.|.+.|+||+.|++.|..++...... +. ....+
T Consensus 537 ~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-----l~-----------------~~~~p 594 (852)
T TIGR03346 537 VSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-----LS-----------------DPNRP 594 (852)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc-----CC-----------------CCCCC
Confidence 46788988876443 334577888888999999999999998632111 00 00123
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
...+||.||+|||||++|++||+.+ +.+++.++++++.+. +|+|......+.+.+... .
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~-------p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK-------P 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcC-------C
Confidence 3579999999999999999999988 458999998865321 456665444444443322 3
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~ 469 (556)
.+|||||||++++++ +++.|+++|| |.++. ..+..++++|.+||+|+|.. ...
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d-----------~~g~~vd~rn~iiI~TSn~g-~~~ 721 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTD-----------GQGRTVDFRNTVIIMTSNLG-SQF 721 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHhcCceec-----------CCCeEEecCCcEEEEeCCcc-hHh
Confidence 469999999999988 9999999998 43331 23457899999999999853 222
Q ss_pred HHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 470 ~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
+... + ... .++.....+++. ++..|.|+|++||+.++.|.+++.+++.+|+...+..
T Consensus 722 ~~~~--~------~~~---------~~~~~~~~~~~~------~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 722 IQEL--A------GGD---------DYEEMREAVMEV------LRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred Hhhh--c------ccc---------cHHHHHHHHHHH------HHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 2110 0 000 011222222222 3445999999999999999999999999999888887
Q ss_pred Hhhh
Q 008723 550 LGQI 553 (556)
Q Consensus 550 l~kq 553 (556)
+.++
T Consensus 779 l~~~ 782 (852)
T TIGR03346 779 LRKR 782 (852)
T ss_pred HHHH
Confidence 6654
No 29
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.2e-17 Score=169.33 Aligned_cols=185 Identities=18% Similarity=0.344 Sum_probs=128.2
Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 268 ~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.++|++ ++|++.+|+.|.+.+...... ......+ .. ......+++|+||||||||++|+++|+
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~~~~--~~~~~~g--~~------------~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWIQIN--EKRKEEG--LK------------TSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHHHHH--HHHHHcC--CC------------CCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 356777 799999999999887532111 0100111 11 112247899999999999999999998
Q ss_pred Hh-------CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 348 HV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 348 ~l-------~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
.+ ..+++.++++++.. .|+|+. +..+.++|..+ .++||||||+|.|.... .......+
T Consensus 65 ~l~~~~~~~~~~~v~~~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~------~~~~~~~~ 129 (261)
T TIGR02881 65 LFKEMNVLSKGHLIEVERADLVG-EYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARGG------EKDFGKEA 129 (261)
T ss_pred HHHhcCcccCCceEEecHHHhhh-hhccch-HHHHHHHHHhc-------cCCEEEEechhhhccCC------ccchHHHH
Confidence 75 23788888888874 488887 56666777654 35799999999986321 11112347
Q ss_pred HHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhH
Q 008723 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (556)
Q Consensus 421 ~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~ 500 (556)
++.|++.||. ...++++|++++..+++.+.
T Consensus 130 i~~Ll~~~e~---------------------~~~~~~vila~~~~~~~~~~----------------------------- 159 (261)
T TIGR02881 130 IDTLVKGMED---------------------NRNEFVLILAGYSDEMDYFL----------------------------- 159 (261)
T ss_pred HHHHHHHHhc---------------------cCCCEEEEecCCcchhHHHH-----------------------------
Confidence 8899999883 12446677776654332211
Q ss_pred HHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 501 ~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
.+.|.+.+||+..+.|++++.+++.+|+......
T Consensus 160 ---------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 160 ---------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ---------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 1578999999999999999999999999876654
No 30
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-18 Score=188.09 Aligned_cols=167 Identities=26% Similarity=0.390 Sum_probs=132.8
Q ss_pred ccChHHHHHHHHHHHHH--HHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 275 VIGQEKAKKVLSVAVYN--HYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~--~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
|.|..++|+.|.+.+.+ .|..|+...-- +-..+|||+||||||||.+|-++|..++..
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~pl--------------------r~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPL--------------------RLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCc--------------------ccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 89999999999999985 35555443211 123789999999999999999999999999
Q ss_pred eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 353 fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
|+.+.+.+++ ++|+|.+ |+.++.+|.+|. .++|||||+||+|.++++|+.+..|- .++|.++||..|||-.
T Consensus 729 fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 729 FISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAE 799 (952)
T ss_pred EEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhcccc
Confidence 9999999999 4699999 889999999887 45999999999999999987654442 2569999999999621
Q ss_pred cccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhh
Q 008723 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 433 v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~ 489 (556)
....+.+++++...||.| +++.+|+++-++-+.|+..+
T Consensus 800 -------------------gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 800 -------------------GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred -------------------ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 123345566666677644 56778999999888887544
No 31
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.9e-18 Score=191.46 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=168.8
Q ss_pred CCCCCCCCCCCCCCC----ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccc
Q 008723 248 GGSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVEL 323 (556)
Q Consensus 248 ~~~~~~~~~~~~~~~----~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~ 323 (556)
..+.|++.++..... ....+.+.|.+.|+||++|+.+|.++|..... .+.+ . .
T Consensus 533 ~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~----~--------------~ 589 (898)
T KOG1051|consen 533 VVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKD----P--------------N 589 (898)
T ss_pred hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCC----C--------------C
Confidence 357899988877643 45568999999999999999999999963311 1111 0 2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc--------cccCccccchHHHHHHHHHhcccchhccCCe
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL--------TQAGYVGEDVESILYKLLAQAEFNVEAAQQG 392 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l--------~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~ 392 (556)
+...++|.||.|+|||.||++||..+ ...|+.++++++ ...+|+|+.....+.+.++..+ .+
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP-------~s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRP-------YS 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCC-------ce
Confidence 45789999999999999999999998 347999999962 2347999997778877766554 46
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHH
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTI 471 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i 471 (556)
||+|||||+.++. +++.|+++|| |+++.- .+..++.+|++||+|+|.. ...+.
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs-----------~Gr~Vd~kN~I~IMTsn~~-~~~i~ 716 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDS-----------HGREVDFKNAIFIMTSNVG-SSAIA 716 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHhcCccccC-----------CCcEeeccceEEEEecccc-hHhhh
Confidence 9999999999988 9999999999 766632 3447899999999998853 22222
Q ss_pred HhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHH----cCCCHHHhccCCceeeCCCCCHHHHHHHHhhhH
Q 008723 472 SERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA----YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPK 547 (556)
Q Consensus 472 ~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~----~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~ 547 (556)
........+.+ .+.... .+...+... .+..+ ..+.|||++|++.++.|.+++.+++.+|+....
T Consensus 717 ~~~~~~~~l~~--~~~~~~----~~~~~k~~v------~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 717 NDASLEEKLLD--MDEKRG----SYRLKKVQV------SDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred ccccccccccc--chhhhh----hhhhhhhhh------hhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 21110001111 110000 000111111 22223 569999999999999999999999999988777
Q ss_pred HHHhhhh
Q 008723 548 NALGQIT 554 (556)
Q Consensus 548 ~~l~kqy 554 (556)
..+.+.+
T Consensus 785 ~e~~~r~ 791 (898)
T KOG1051|consen 785 TEIEKRL 791 (898)
T ss_pred HHHHHHh
Confidence 7665543
No 32
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.76 E-value=8.1e-18 Score=195.80 Aligned_cols=226 Identities=26% Similarity=0.401 Sum_probs=157.0
Q ss_pred CCCCCCCCCCCCCCC----hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhccccccccc
Q 008723 249 GSRWGGSNLGEDLPT----PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (556)
Q Consensus 249 ~~~~~~~~~~~~~~~----p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~ 324 (556)
+++|+++++.+.... ...+.+.|.+.|+||+.+++.|..+|......+ .. ...+
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl-----~~-----------------~~~p 597 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGL-----SD-----------------PNRP 597 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcc-----cC-----------------CCCC
Confidence 578999999875544 345888888889999999999999986321110 00 0012
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
...+||+||+|||||++|++||+.+ +.+|+.++++++.+. +|+|......+.+.... ..
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~-------~p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR-------RP 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh-------CC
Confidence 2468999999999999999999987 457899998865431 35555533344333322 24
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~ 469 (556)
.+|||||||+++.+. +++.|+++|| |.++. ..+..++++|.+||+|+|... +.
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d-----------~~gr~vd~rn~iiI~TSN~g~-~~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTD-----------GQGRTVDFRNTVVIMTSNLGS-DL 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHhhCceec-----------CCceEEeecccEEEEeCCcch-HH
Confidence 479999999999888 9999999998 44331 233568999999999988631 11
Q ss_pred HHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 470 ~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
+.. + |+... ...+.+.++.. ++..|.|+|++|++.++.|.+|+.+++.+|+...+..
T Consensus 725 -~~~-~------~~~~~---------~~~~~~~~~~~------~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 -IQE-R------FGELD---------YAHMKELVLGV------VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred -HHH-h------ccccc---------hHHHHHHHHHH------HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 111 1 11111 11122222222 3445999999999999999999999999999888887
Q ss_pred Hhh
Q 008723 550 LGQ 552 (556)
Q Consensus 550 l~k 552 (556)
+.+
T Consensus 782 l~~ 784 (857)
T PRK10865 782 LYK 784 (857)
T ss_pred HHH
Confidence 654
No 33
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.9e-18 Score=185.66 Aligned_cols=170 Identities=29% Similarity=0.355 Sum_probs=132.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+.|++.+|+.+.+++...+++... +.. ....++.++||+||||||||++|+++|.+++.+|+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~--~~~----------------~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPEL--FRK----------------LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHH--HHh----------------cCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 788999999999999865433211 100 01123468999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.++..++. ++|+|++ ++.++++|..+. ...++||||||||++.+.|.....+ +.++++++||..|+|.
T Consensus 306 ~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~--- 373 (494)
T COG0464 306 SVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGI--- 373 (494)
T ss_pred EeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCC---
Confidence 99999888 5699999 899999999887 3489999999999999886543322 2256999999999851
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhc--ccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISER--RQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~r--r~~~~i~f~~p~~~~~ 490 (556)
-...++++|.|+|..+..+.+..| ||+..++++.|+.+..
T Consensus 374 ----------------e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 374 ----------------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred ----------------CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 234456778888887765544445 9999999999997664
No 34
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.3e-18 Score=168.40 Aligned_cols=176 Identities=28% Similarity=0.442 Sum_probs=134.0
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
--+.|-|+++-++.|.+.+....+ +..+...+|- ..+.++||+||||||||++|+++|....
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvK---HPELF~aLGI---------------aQPKGvlLygppgtGktLlaraVahht~ 206 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVK---HPELFEALGI---------------AQPKGVLLYGPPGTGKTLLARAVAHHTD 206 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhcccc---CHHHHHhcCC---------------CCCcceEEecCCCCchhHHHHHHHhhcc
Confidence 334588999999999998874322 2322222221 1257899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
+.|++++.+++++ +|+|+. .+.++++|..++.. .|+|||+||||.+...|-....+.+ .++|..+|++|..
T Consensus 207 c~firvsgselvq-k~igeg-srmvrelfvmareh----apsiifmdeidsigs~r~e~~~ggd---sevqrtmlellnq 277 (404)
T KOG0728|consen 207 CTFIRVSGSELVQ-KYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSSRVESGSGGD---SEVQRTMLELLNQ 277 (404)
T ss_pred eEEEEechHHHHH-HHhhhh-HHHHHHHHHHHHhc----CCceEeeecccccccccccCCCCcc---HHHHHHHHHHHHh
Confidence 9999999999995 599998 88999999988754 7999999999999888765544432 2378877777651
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhh
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~ 489 (556)
+ ++ .-.++||-+|+++|..|+.+ +++.+|.+..|.|+.|+.+.
T Consensus 278 ----l-----------dg-featknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 278 ----L-----------DG-FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred ----c-----------cc-cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 0 00 13578899999999998644 45668999999999987443
No 35
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3e-18 Score=189.23 Aligned_cols=177 Identities=25% Similarity=0.319 Sum_probs=139.7
Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 268 ~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...+.+ |.|.+++|+.|.+.|.- .+ .... +.+.-+.-++++||+||||||||++||++|.
T Consensus 146 ~v~F~D-VAG~dEakeel~EiVdf--Lk--~p~k---------------y~~lGakiPkGvlLvGpPGTGKTLLAkAvAg 205 (596)
T COG0465 146 KVTFAD-VAGVDEAKEELSELVDF--LK--NPKK---------------YQALGAKIPKGVLLVGPPGTGKTLLAKAVAG 205 (596)
T ss_pred CcChhh-hcCcHHHHHHHHHHHHH--Hh--Cchh---------------hHhcccccccceeEecCCCCCcHHHHHHHhc
Confidence 334555 89999999999999861 11 1111 1112223468999999999999999999999
Q ss_pred HhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHH
Q 008723 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (556)
Q Consensus 348 ~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~ 427 (556)
+.+.||+.++.+++++. |+|.. .+.++.+|.++..+ .||||||||||.+...|.....+.+...+.++++||..
T Consensus 206 EA~VPFf~iSGS~FVem-fVGvG-AsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE 279 (596)
T COG0465 206 EAGVPFFSISGSDFVEM-FVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 279 (596)
T ss_pred ccCCCceeccchhhhhh-hcCCC-cHHHHHHHHHhhcc----CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh
Confidence 99999999999999976 89988 78999999998743 78999999999999988766666677778899999999
Q ss_pred HhccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HH-HHHhcccccccccCChhhhh
Q 008723 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EK-TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 428 LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~-~i~~rr~~~~i~f~~p~~~~ 489 (556)
|||+- ..+.+++++++|..|. |. +++.+||+..+..+.|+...
T Consensus 280 mDGF~-------------------~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 280 MDGFG-------------------GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred hccCC-------------------CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 99622 2244677778888774 33 56778999999999998554
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=1.9e-17 Score=190.30 Aligned_cols=174 Identities=24% Similarity=0.357 Sum_probs=130.5
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |.|++.+|+.|.+.+...++. .......+ ..++.++||+||||||||++|+++|.+++
T Consensus 452 ~~d-i~g~~~~k~~l~~~v~~~~~~---~~~~~~~g---------------~~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 452 WSD-IGGLEEVKQELREAVEWPLKH---PEIFEKMG---------------IRPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hhh-cccHHHHHHHHHHHHHhhhhC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 444 899999999999998743221 11110001 12357899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.++++++.. +|+|++ ++.++.+|..+.. ..++||||||||.+.+.+..... ....+++.++||..|||
T Consensus 513 ~~fi~v~~~~l~~-~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg 584 (733)
T TIGR01243 513 ANFIAVRGPEILS-KWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDG 584 (733)
T ss_pred CCEEEEehHHHhh-cccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhc
Confidence 9999999999884 599998 7889999988763 37899999999999887643221 11235588999999985
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHHh-cccccccccCChhhhhh
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISE-RRQDSSIGFGAPVRANM 490 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~~-rr~~~~i~f~~p~~~~~ 490 (556)
. ....++++|+|+|..+. +.++.+ +||+..++++.|+.+..
T Consensus 585 ~-------------------~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 585 I-------------------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR 627 (733)
T ss_pred c-------------------cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence 1 13456788888887774 444443 69999999999986654
No 37
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.74 E-value=3.5e-17 Score=179.54 Aligned_cols=179 Identities=26% Similarity=0.339 Sum_probs=125.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++..++.|.++|...+.+ ..+... .-..++.++||+||||||||++|+++|+.+
T Consensus 180 ~~~d-IgGl~~~i~~i~~~v~lp~~~---~~l~~~---------------~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 180 TYAD-IGGLDSQIEQIRDAVELPFLH---PELYRE---------------YDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CHHH-cCChHHHHHHHHHHHHHHhhC---HHHHHh---------------ccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4555 899999999999998754332 111111 011235789999999999999999999998
Q ss_pred CCC----------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 350 NVP----------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 350 ~~~----------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
+.+ |+.+...++. .+|+|+. +..++.+|..+........++||||||||.+...|... .+.+. ...
T Consensus 241 ~~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~ 316 (512)
T TIGR03689 241 AQRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETT 316 (512)
T ss_pred ccccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHH
Confidence 654 5566666766 3588887 77888888877644334568999999999998765432 11221 234
Q ss_pred HHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHH-hcccccccccCChhhhhh
Q 008723 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 420 v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
+.++||..|||. ....++++|+|+|..+. +.++. .+||+..|.|+.|+.+..
T Consensus 317 il~~LL~~LDgl-------------------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 317 VVPQLLSELDGV-------------------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred HHHHHHHHhccc-------------------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHH
Confidence 778899998851 12346778888887764 44443 469999999999986653
No 38
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.2e-18 Score=172.25 Aligned_cols=180 Identities=26% Similarity=0.376 Sum_probs=134.9
Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 268 ~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.+...+ |-|++.-+..|.+.+... +.+...... --..++.+|+|+|+||||||+||+++|+
T Consensus 181 ~Ety~d-iGGle~QiQEiKEsvELP---LthPE~Yee---------------mGikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 181 QETYAD-IGGLESQIQEIKESVELP---LTHPEYYEE---------------MGIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred hhhhcc-cccHHHHHHHHHHhhcCC---CCCHHHHHH---------------cCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 344455 899999999999999743 222222222 1234578999999999999999999999
Q ss_pred HhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHH
Q 008723 348 HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (556)
Q Consensus 348 ~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~ 427 (556)
.....|+++..+++.. +|.|+. .+.++++|+.+... .++|+||||||++..+|=..+.+. .+++|..+|++
T Consensus 242 qTSATFlRvvGseLiQ-kylGdG-pklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~Sgg---erEiQrtmLEL 312 (440)
T KOG0726|consen 242 QTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGG---EREIQRTMLEL 312 (440)
T ss_pred ccchhhhhhhhHHHHH-HHhccc-hHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCcc---HHHHHHHHHHH
Confidence 9999999999999995 599998 78999999988755 899999999999988765444333 25688888888
Q ss_pred HhccccccCCCCcccCCCCCceEEec-CceEEEecCCCcC-hHH-HHHhcccccccccCChhhhhhcc
Q 008723 428 LEGTIVNVPEKGARKHPRGDSIQMDT-KDILFICGGAFVD-LEK-TISERRQDSSIGFGAPVRANMRA 492 (556)
Q Consensus 428 LEg~~v~ipe~g~r~~~~~~~ivid~-rnii~I~t~n~~d-l~~-~i~~rr~~~~i~f~~p~~~~~~~ 492 (556)
|.. ++ | +|+ .++-+|+++|..+ |+. +++.+|.+..|.|+.|+......
T Consensus 313 LNQ----ld--G-----------FdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 313 LNQ----LD--G-----------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred HHh----cc--C-----------ccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhce
Confidence 761 00 0 122 3466677777665 444 57889999999999999665444
No 39
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.73 E-value=4.2e-17 Score=178.70 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=119.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++.+|+.|.+.... +... .. ..-...+++|||+||||||||++|+++|++++.+|+
T Consensus 230 vgGl~~lK~~l~~~~~~-~~~~---~~-----------------~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTS-FSKQ---AS-----------------NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred hcCHHHHHHHHHHHHHH-hhHH---HH-----------------hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 89999999988765431 1100 00 001123588999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.++++.+. .+|+|++ +..++++|..+.. ..+|||||||||++...+..... .....++...|+..|++
T Consensus 289 ~l~~~~l~-~~~vGes-e~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~---- 356 (489)
T CHL00195 289 RLDVGKLF-GGIVGES-ESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE---- 356 (489)
T ss_pred EEEhHHhc-ccccChH-HHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc----
Confidence 99999888 4599998 7788999987653 37999999999998765332111 11224577788888762
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~~ 490 (556)
....+++|+|+|..+ +++.+ +.+||+..++++.|+.++.
T Consensus 357 -----------------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 357 -----------------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred -----------------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 123466777777664 55554 4579999999999986653
No 40
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=4.6e-17 Score=174.58 Aligned_cols=177 Identities=27% Similarity=0.371 Sum_probs=123.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++.+|+.|.+++...+.. ..+....| ..++.++||+||||||||++|+++|+.+
T Consensus 143 ~~~d-igGl~~~k~~l~~~v~~pl~~---~~~~~~~G---------------l~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 143 TYSD-IGGLDIQKQEIREAVELPLTC---PELYEQIG---------------IDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CHHH-cCCHHHHHHHHHHHHHHHhcC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3455 899999999999999754332 11111111 1235889999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+.++++.. .|+|+. +..++.+|..+.. ..++||||||||.+...+.....+.+.....+...|+..|+
T Consensus 204 ~~~fi~i~~s~l~~-k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 204 TATFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred CCCEEEEehHHHHH-Hhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 99999999988874 488887 6778888877653 37899999999999876543322222121234455555555
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
+. -...++++|+++|..+ +++++. .+||+..|.|+.|+.+..
T Consensus 278 ~~-------------------~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R 321 (398)
T PTZ00454 278 GF-------------------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 321 (398)
T ss_pred cc-------------------CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHH
Confidence 31 0123466677776655 445443 469999999999986653
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=9.7e-17 Score=176.83 Aligned_cols=176 Identities=26% Similarity=0.333 Sum_probs=125.7
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|++ |+|++++|+.|.+.+.. ++ +.......+ ...+.++||+||||||||++|++||.+
T Consensus 52 ~~~~d-i~g~~~~k~~l~~~~~~-l~---~~~~~~~~g---------------~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 52 VTFKD-VAGIDEAKEELMEIVDF-LK---NPSKFTKLG---------------AKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCHHH-hCCHHHHHHHHHHHHHH-HH---CHHHHHhcC---------------CCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35666 79999999999987752 11 111111111 123478999999999999999999999
Q ss_pred hCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 349 l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
++.+|+.++++++.+ .|+|.. ++.++.+|..+.. ..++||||||||.+...+.....+.+.....+++.||..|
T Consensus 112 ~~~~~~~i~~~~~~~-~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~ 185 (495)
T TIGR01241 112 AGVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 185 (495)
T ss_pred cCCCeeeccHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh
Confidence 999999999998874 377776 6788889887653 3789999999999987765432222333345788888888
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhh
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
|+. ....++++|+|+|..+ +++++. ..||+..+.++.|+.+.
T Consensus 186 d~~-------------------~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 186 DGF-------------------GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred ccc-------------------cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 841 1223466777777665 555544 46999999999998654
No 42
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.72 E-value=3.7e-17 Score=171.11 Aligned_cols=152 Identities=14% Similarity=0.224 Sum_probs=109.5
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccch-hccCCeEEEEeccccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKI 402 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l-~~a~~~VLfLDEID~l 402 (556)
.+..++|+||||||||++|+++|++++.+|+.+++.++. ++|+|+. ++.++++|..|.... ...++|||||||||++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 468899999999999999999999999999999999999 5699999 899999999886432 2357999999999999
Q ss_pred chhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHH-HHhcccccc
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKT-ISERRQDSS 479 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~-i~~rr~~~~ 479 (556)
.+.+++ ....+..+.+..+|+.+||+- .+.++.. -. -.-....+++|+|+|..+. +.. ++.+||++.
T Consensus 225 ~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~--w~------~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 225 AGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGD--WR------EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred CCCCCC--CCcchHHHHHHHHHHHHhcCCcccccccc--cc------ccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 987653 223333344568899999851 1111110 00 0012445777787777774 443 344599886
Q ss_pred cccCChhhhh
Q 008723 480 IGFGAPVRAN 489 (556)
Q Consensus 480 i~f~~p~~~~ 489 (556)
+ ..|+.+.
T Consensus 295 i--~lPd~e~ 302 (413)
T PLN00020 295 Y--WAPTRED 302 (413)
T ss_pred e--CCCCHHH
Confidence 4 4677554
No 43
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.7e-17 Score=167.23 Aligned_cols=234 Identities=21% Similarity=0.325 Sum_probs=156.9
Q ss_pred CCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChh
Q 008723 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (556)
Q Consensus 259 ~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGK 338 (556)
.....|.++...+++ |-|++.+|++|.+.|....++ ..+.. .-.+..+..+|||+|||||||
T Consensus 79 s~~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~---pelF~--------------~g~Ll~p~kGiLL~GPpG~GK 140 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRR---PELFA--------------KGKLLRPPKGILLYGPPGTGK 140 (386)
T ss_pred hcccchhhceeehhh-ccchHHHHHHHHHHHhhcccc---hhhhc--------------ccccccCCccceecCCCCchH
Confidence 355678888999998 899999999999999754322 11110 111223678999999999999
Q ss_pred HHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 339 TtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
|.+|+++|++.+..|+.|..+.+++ +|+|+. ++.++.+|..+. +-+|+||||||||.+...|. .+.+....
T Consensus 141 TmlAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~---s~dHEa~a 211 (386)
T KOG0737|consen 141 TMLAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRR---STDHEATA 211 (386)
T ss_pred HHHHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhcc---cchHHHHH
Confidence 9999999999999999999999996 699998 889999998776 33899999999999998773 22233334
Q ss_pred HHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCCCcChHHHHHhcccccccccCChhhhhhccccchh
Q 008723 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~ 497 (556)
.+.+++..+-||..+. +...++++. |+...|+++++.+ |+-..+..+.|+.++.
T Consensus 212 ~mK~eFM~~WDGl~s~-----------------~~~rVlVlgATNRP~DlDeAiiR-R~p~rf~V~lP~~~qR------- 266 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSK-----------------DSERVLVLGATNRPFDLDEAIIR-RLPRRFHVGLPDAEQR------- 266 (386)
T ss_pred HHHHHHHHHhccccCC-----------------CCceEEEEeCCCCCccHHHHHHH-hCcceeeeCCCchhhH-------
Confidence 4667777777763331 111234444 4555678888774 6677888888875543
Q ss_pred HhHHHHHhhc-CchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhh
Q 008723 498 AVTSSLLESV-ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQI 553 (556)
Q Consensus 498 ~~~~~l~~~l-~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kq 553 (556)
..+++.+ +.+.+. ..+.-.-+.+ .-..||=.+|.+.+......-.++
T Consensus 267 ---~kILkviLk~e~~e-~~vD~~~iA~-----~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 267 ---RKILKVILKKEKLE-DDVDLDEIAQ-----MTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred ---HHHHHHHhcccccC-cccCHHHHHH-----hcCCCcHHHHHHHHHHHhHhHHHH
Confidence 2333333 111111 1121111111 235788888888876554444444
No 44
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.71 E-value=1.4e-16 Score=170.54 Aligned_cols=173 Identities=29% Similarity=0.405 Sum_probs=119.8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++.+++.|.+++...+.+ .......| ..++.+|||+||||||||++|+++|+.++.+|+
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~---~~~~~~~g---------------~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKK---PELFEEVG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhC---HHHHHhcC---------------CCCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 899999999999998743322 11111111 123578999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.++++++.. .|+|+. +..++.+|..+.. ..++||||||||.+...+.....+.. ..++..|++++...
T Consensus 195 ~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~l--- 262 (389)
T PRK03992 195 RVVGSELVQ-KFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEM--- 262 (389)
T ss_pred EeehHHHhH-hhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhc---
Confidence 999999874 488887 6788888887653 37899999999999876543222111 22555555554310
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
+ + .....++++|+|+|..+ ++..+. .+||+..+.|+.|+.+..
T Consensus 263 -d--~----------~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 263 -D--G----------FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred -c--c----------cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence 0 0 01223567777777665 444443 368999999999986653
No 45
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.6e-17 Score=163.09 Aligned_cols=174 Identities=24% Similarity=0.316 Sum_probs=129.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|-|..+.++.|++.|..... +.. +.+..-..++.+|||+||||||||++|+++|+..+.-|+
T Consensus 179 vggckeqieklrevve~pll---~pe---------------rfv~lgidppkgvllygppgtgktl~aravanrtdacfi 240 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLL---HPE---------------RFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFI 240 (435)
T ss_pred ccchHHHHHHHHHHHhcccc---CHH---------------HHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEE
Confidence 88999999999998874322 111 122233446799999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
++-.+++++ +|+|+. .+.++++|+.+... +-||||+||||.+...|-....+.+ .++|..+|+++..
T Consensus 241 rvigselvq-kyvgeg-armvrelf~martk----kaciiffdeidaiggarfddg~ggd---nevqrtmleli~q---- 307 (435)
T KOG0729|consen 241 RVIGSELVQ-KYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELINQ---- 307 (435)
T ss_pred eehhHHHHH-HHhhhh-HHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHHh----
Confidence 999999995 599998 89999999998854 6799999999998877644333322 3488888888651
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHH-HHHhcccccccccCChhhhhhc
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEK-TISERRQDSSIGFGAPVRANMR 491 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~-~i~~rr~~~~i~f~~p~~~~~~ 491 (556)
++.. + .--||-+++++|..+ |+. +++.+|.+..++|.+|+.+-..
T Consensus 308 ldgf-----d-------prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt 354 (435)
T KOG0729|consen 308 LDGF-----D-------PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRT 354 (435)
T ss_pred ccCC-----C-------CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccc
Confidence 1000 0 113455666666665 544 5677899999999999976643
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-16 Score=175.23 Aligned_cols=167 Identities=26% Similarity=0.361 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEE
Q 008723 251 RWGGSNLGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLL 330 (556)
Q Consensus 251 ~~~~~~~~~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL 330 (556)
.|+.. .....+.++..+.||+...|++++|++|.+.+.-. .+ .+. ....-++|
T Consensus 303 PW~~~--sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~--~l-----~~~------------------~kGpILcL 355 (782)
T COG0466 303 PWGKR--SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ--KL-----TKK------------------LKGPILCL 355 (782)
T ss_pred CCccc--cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHH--HH-----hcc------------------CCCcEEEE
Confidence 45443 23556788899999999999999999999988522 11 000 12356889
Q ss_pred eCCCCChhHHHHHHHHHHhCCCeeeecccccccc--------CccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 331 MGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 331 ~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s--------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
+||||+|||++++.||+.++..|++++..-+.+. -|+|.-..+++..+-+... .+.+++|||||++
T Consensus 356 VGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDKm 429 (782)
T COG0466 356 VGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKM 429 (782)
T ss_pred ECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC------cCCeEEeechhhc
Confidence 9999999999999999999999999987744322 3888887888766654433 4569999999999
Q ss_pred chhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d 466 (556)
..+-+++ --.+||++|| ||++....++.-.+..|.++++||+|+|..+
T Consensus 430 ~ss~rGD----------PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 430 GSSFRGD----------PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred cCCCCCC----------hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc
Confidence 8874432 5678999999 8888888888999999999999999999866
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.9e-16 Score=158.16 Aligned_cols=176 Identities=28% Similarity=0.452 Sum_probs=132.0
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+.|+++ +||+++|+.|...+... ..+. -...|+||+||||.||||||..+|++
T Consensus 23 ~~l~ef-iGQ~~vk~~L~ifI~AA-------k~r~-------------------e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 23 KTLDEF-IGQEKVKEQLQIFIKAA-------KKRG-------------------EALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred ccHHHh-cChHHHHHHHHHHHHHH-------HhcC-------------------CCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 456665 99999999999988632 1111 12479999999999999999999999
Q ss_pred hCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 349 l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
++..+-..++..+... ..+..++.... .+-|||||||+++.+. +-+.|...|
T Consensus 76 mgvn~k~tsGp~leK~--------gDlaaiLt~Le------~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKP--------GDLAAILTNLE------EGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccCh--------hhHHHHHhcCC------cCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 9988877776655532 22333333322 5679999999999988 888999999
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcC
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~ 508 (556)
|.+.+.|- --+.+....+.++...+.+|.|++...+
T Consensus 128 EDf~lDI~---IG~gp~Arsv~ldLppFTLIGATTr~G~----------------------------------------- 163 (332)
T COG2255 128 EDFRLDII---IGKGPAARSIRLDLPPFTLIGATTRAGM----------------------------------------- 163 (332)
T ss_pred hheeEEEE---EccCCccceEeccCCCeeEeeecccccc-----------------------------------------
Confidence 98766531 0122455678889999999988775432
Q ss_pred chHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHh
Q 008723 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALG 551 (556)
Q Consensus 509 ~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~ 551 (556)
+...+.+||..+..++-++.+||.+|+.+....|.
T Consensus 164 --------lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~ 198 (332)
T COG2255 164 --------LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG 198 (332)
T ss_pred --------ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC
Confidence 56688999999999999999999999977655443
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2e-16 Score=165.72 Aligned_cols=129 Identities=27% Similarity=0.409 Sum_probs=100.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.+++|+|||||||||+|++||+..+..|..+++.... .+.++++++.+.......+..|||||||+++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6899999999999999999999999999999986432 5678888888865555567899999999999887
Q ss_pred hhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
.|+.||..||. ..|++|.|++.+.. |
T Consensus 120 --------------QQD~lLp~vE~-----------------------G~iilIGATTENPs--------------F--- 145 (436)
T COG2256 120 --------------QQDALLPHVEN-----------------------GTIILIGATTENPS--------------F--- 145 (436)
T ss_pred --------------hhhhhhhhhcC-----------------------CeEEEEeccCCCCC--------------e---
Confidence 89999999982 12456666653321 1
Q ss_pred hhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
.++|.+++|-. +..|.+|+.+++.++|.+...
T Consensus 146 ------------------------------~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 146 ------------------------------ELNPALLSRAR-VFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred ------------------------------eecHHHhhhhh-eeeeecCCHHHHHHHHHHHHh
Confidence 15677777765 777888888888888876443
No 49
>CHL00176 ftsH cell division protein; Validated
Probab=99.69 E-value=2.5e-16 Score=177.54 Aligned_cols=176 Identities=27% Similarity=0.390 Sum_probs=124.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++|+.|.+.+.. ++ ........+ ...+.++||+||||||||++|+++|.++
T Consensus 181 ~f~d-v~G~~~~k~~l~eiv~~-lk---~~~~~~~~g---------------~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 181 TFRD-IAGIEEAKEEFEEVVSF-LK---KPERFTAVG---------------AKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CHHh-ccChHHHHHHHHHHHHH-Hh---CHHHHhhcc---------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 89999999999988752 11 111111111 1235789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.+. ++|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++.||..||
T Consensus 241 ~~p~i~is~s~f~~~-~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 241 EVPFFSISGSEFVEM-FVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD 314 (638)
T ss_pred CCCeeeccHHHHHHH-hhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc
Confidence 999999999987743 66665 5678888887653 37899999999999876544332333333457777888777
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~~ 490 (556)
|. ....++++|+++|..+ ++.++ +.+||+..+.++.|+.+..
T Consensus 315 g~-------------------~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 315 GF-------------------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred cc-------------------cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 41 1233567777777755 44444 4569999999999986654
No 50
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.68 E-value=2.7e-16 Score=170.23 Aligned_cols=177 Identities=27% Similarity=0.372 Sum_probs=120.9
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++..++.|.+++..... +..+....+ ..++.++||+||||||||++|+++|+++
T Consensus 181 ~~~D-IgGl~~qi~~l~e~v~lpl~---~p~~~~~~g---------------i~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 181 SYAD-IGGLEQQIQEIKEAVELPLT---HPELYDDIG---------------IKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CHHH-hcCHHHHHHHHHHHHHhhhh---CHHHHHhcC---------------CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444 89999999999999864321 111111111 1235789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+.++++.. .|+|+. +..++.+|..+.. ..++||||||||.+..++.....+.......+...||..|+
T Consensus 242 ~~~fi~V~~seL~~-k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 242 SATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred CCCEEEEecchhhh-hhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 99999999998875 488887 6778888877653 36899999999999876543322222111123334455555
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
+. ....++.+|+++|..+ ++.++. .+||+..|.|+.|+.+..
T Consensus 316 g~-------------------~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 316 GF-------------------DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred hh-------------------cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 31 0123456677666555 455443 479999999999986654
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=9e-16 Score=177.46 Aligned_cols=190 Identities=23% Similarity=0.319 Sum_probs=131.0
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
..+.+.+.+.|++.++||+++|+.|.+.+.....+ . ...+.+++|+||||||||+
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~----------------------~~~~~~lll~GppG~GKT~ 362 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G----------------------KMKGPILCLVGPPGVGKTS 362 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c----------------------CCCCceEEEECCCCCCHHH
Confidence 45677889999999999999999999876532110 0 0123579999999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccc--------cCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 341 LAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~--------sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
+|++||+.++.+|+.+++..+.. ..|+|..... +...+..+. ....||||||||++.+...+
T Consensus 363 lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~-i~~~l~~~~-----~~~~villDEidk~~~~~~~---- 432 (775)
T TIGR00763 363 LGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR-IIQGLKKAK-----TKNPLFLLDEIDKIGSSFRG---- 432 (775)
T ss_pred HHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-HHHHHHHhC-----cCCCEEEEechhhcCCccCC----
Confidence 99999999999999998764321 2467766333 334454432 13459999999999864211
Q ss_pred ccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhcc
Q 008723 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~ 492 (556)
+ ..++|+++||. ++.....+......+|.++++||+|+|..+
T Consensus 433 -~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-------------------------- 474 (775)
T TIGR00763 433 -D-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID-------------------------- 474 (775)
T ss_pred -C-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch--------------------------
Confidence 1 56789999982 111112222334567889999999988532
Q ss_pred ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhH
Q 008723 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPK 547 (556)
Q Consensus 493 ~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~ 547 (556)
.+.|+|++|+. ++.|++++.+++.+|+...+
T Consensus 475 -----------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 475 -----------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred -----------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHH
Confidence 15677777874 67788888877777775543
No 52
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-16 Score=158.43 Aligned_cols=172 Identities=24% Similarity=0.363 Sum_probs=128.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|+++-++.|.+++...+. +..... ..-..++.++|++||||||||++||+.|...+..|+
T Consensus 173 iGGldkQIqELvEAiVLpmt---h~ekF~---------------~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL 234 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMT---HKEKFE---------------NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL 234 (424)
T ss_pred cccHHHHHHHHHHHhccccc---cHHHHH---------------hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH
Confidence 89999999999999864321 111111 122346789999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.+.+..++.. |+|.. .+.++..|..+... .|+||||||+|.+..+|-.++-.. .+++|..+|++|..
T Consensus 235 KLAgPQLVQM-fIGdG-AkLVRDAFaLAKEk----aP~IIFIDElDAIGtKRfDSek~G---DREVQRTMLELLNQ---- 301 (424)
T KOG0652|consen 235 KLAGPQLVQM-FIGDG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKAG---DREVQRTMLELLNQ---- 301 (424)
T ss_pred HhcchHHHhh-hhcch-HHHHHHHHHHhhcc----CCeEEEEechhhhccccccccccc---cHHHHHHHHHHHHh----
Confidence 9999999865 89988 78999999877644 799999999999988765443322 25588888887651
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhcccccccccCChhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~~i~f~~p~~~~ 489 (556)
+ +++ -...++-+|+++|..|+.+ +++.+|.+..|.|+.|..+.
T Consensus 302 L-----------DGF-ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 302 L-----------DGF-SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred h-----------cCC-CCccceEEEeecccccccCHHHhhcccccccccCCCCChHH
Confidence 0 000 1223466778888887543 56778999999999997443
No 53
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-15 Score=167.07 Aligned_cols=222 Identities=26% Similarity=0.374 Sum_probs=159.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEE
Q 008723 250 SRWGGSNLGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (556)
Q Consensus 250 ~~~~~~~~~~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vL 329 (556)
-.|+.... +.......++.||+...|++++|++|.+.|.-. ++ +. . ..++-+.
T Consensus 390 LPWgk~S~--En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--kL-----rg---s---------------~qGkIlC 442 (906)
T KOG2004|consen 390 LPWGKSST--ENLDLARAKEILDEDHYGMEDVKERILEFIAVG--KL-----RG---S---------------VQGKILC 442 (906)
T ss_pred CCCCCCCh--hhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--hh-----cc---c---------------CCCcEEE
Confidence 34544422 344566788899999999999999999988622 11 10 0 1236688
Q ss_pred EeCCCCChhHHHHHHHHHHhCCCeeeecccccccc--------CccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 330 L~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s--------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
|+||||+|||++||.||+.+|..|++++..-+.+. -|+|.-..+++..+-.... .+.+++|||||+
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDK 516 (906)
T KOG2004|consen 443 FVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDK 516 (906)
T ss_pred EeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhhh
Confidence 99999999999999999999999999887644321 3888887777766543332 456999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccc
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~ 481 (556)
+...-.+ + --.+||++|| ||++....+++-.+.+|.+.++||||+|..+..
T Consensus 517 lG~g~qG-----D-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~idtI------------- 567 (906)
T KOG2004|consen 517 LGSGHQG-----D-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVIDTI------------- 567 (906)
T ss_pred hCCCCCC-----C-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccccC-------------
Confidence 9843211 1 5679999999 888889999999999999999999999987643
Q ss_pred cCChhhhhhcc----ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHh
Q 008723 482 FGAPVRANMRA----GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLT 544 (556)
Q Consensus 482 f~~p~~~~~~~----~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~ 544 (556)
+.|.+.+|+- ++.-++.-...++.+-+..+.++++.|+.+. ++++.+..+++
T Consensus 568 -P~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~----------is~~al~~lI~ 623 (906)
T KOG2004|consen 568 -PPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVK----------ISDDALLALIE 623 (906)
T ss_pred -ChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcC----------ccHHHHHHHHH
Confidence 2233333322 5555555666666777777778888887665 55555555543
No 54
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.4e-16 Score=164.90 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=127.0
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
.+.|++.+|+.+.+++.....|. +.......+...+||+||||+|||+++++||-+++..|
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~-------------------d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRP-------------------DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccch-------------------HhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 38999999999999998654431 11111222347899999999999999999999999999
Q ss_pred eeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcccc
Q 008723 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (556)
Q Consensus 354 v~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v 433 (556)
+.++++++. ++|+|+. ++.++.+|..+... +++|+||||||++..+|.. -..+.+ ++.+..+|-.+++...
T Consensus 215 f~iSassLt-sK~~Ge~-eK~vralf~vAr~~----qPsvifidEidslls~Rs~--~e~e~s-rr~ktefLiq~~~~~s 285 (428)
T KOG0740|consen 215 FNISASSLT-SKYVGES-EKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSD--NEHESS-RRLKTEFLLQFDGKNS 285 (428)
T ss_pred eeccHHHhh-hhccChH-HHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCC--cccccc-hhhhhHHHhhhccccC
Confidence 999999999 5699999 99999999888743 8999999999999998722 222333 3355555544453222
Q ss_pred ccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhhh
Q 008723 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 434 ~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~~ 490 (556)
. .-.+|++|.|+|... +|+++.+ ||.+.++++.|+.+..
T Consensus 286 ~-----------------~~drvlvigaTN~P~e~Dea~~R-rf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 286 A-----------------PDDRVLVIGATNRPWELDEAARR-RFVKRLYIPLPDYETR 325 (428)
T ss_pred C-----------------CCCeEEEEecCCCchHHHHHHHH-HhhceeeecCCCHHHH
Confidence 1 112577778777665 5666655 9999999999986653
No 55
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.64 E-value=4.7e-15 Score=170.96 Aligned_cols=199 Identities=20% Similarity=0.346 Sum_probs=141.6
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEE
Q 008723 250 SRWGGSNLGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (556)
Q Consensus 250 ~~~~~~~~~~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vL 329 (556)
-.|... ..+.....+..+.|++.++|++++|+.|.+.+..... ... .....++
T Consensus 301 ~pw~~~--~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~------~~~-------------------~~g~~i~ 353 (784)
T PRK10787 301 VPWNAR--SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR------VNK-------------------IKGPILC 353 (784)
T ss_pred CCCCCC--CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh------ccc-------------------CCCceEE
Confidence 345443 2345678889999999999999999999887752210 000 1235799
Q ss_pred EeCCCCChhHHHHHHHHHHhCCCeeeecccccccc--------CccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 330 L~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s--------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
|+||||||||++++.+|+.++.+|+++++....+. .|.|......+. .+..+. ....||||||||+
T Consensus 354 l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~-~l~~~~-----~~~~villDEidk 427 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQ-KMAKVG-----VKNPLFLLDEIDK 427 (784)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHH-HHHhcC-----CCCCEEEEEChhh
Confidence 99999999999999999999999999887754321 355555343332 232221 1346999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccc
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~ 481 (556)
+....++ + .+++|+++|| +++.....+.+-.+.+|.++++||+|+|+..
T Consensus 428 ~~~~~~g-----~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~--------------- 476 (784)
T PRK10787 428 MSSDMRG-----D-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSMN--------------- 476 (784)
T ss_pred cccccCC-----C-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCCC---------------
Confidence 9875221 1 6789999999 2333334445556678999999999987521
Q ss_pred cCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 482 f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
+.|.|++|+. ++.|.+++.+++.+|+...+.
T Consensus 477 -----------------------------------i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 477 -----------------------------------IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred -----------------------------------CCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 5788899995 788999999999998876664
No 56
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.62 E-value=1.2e-15 Score=145.49 Aligned_cols=146 Identities=24% Similarity=0.431 Sum_probs=101.4
Q ss_pred CCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhc
Q 008723 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (556)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a 382 (556)
|.|+.|+.+.+.++.++..+.+|||+|++||||+++|++|++.. +.||+.++|+.+.+ +..-.++|...
T Consensus 3 G~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~--------~~~e~~LFG~~ 74 (168)
T PF00158_consen 3 GESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE--------ELLESELFGHE 74 (168)
T ss_dssp --SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H--------HHHHHHHHEBC
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc--------chhhhhhhccc
Confidence 44455555555555666677999999999999999999999977 46999999987642 23334555432
Q ss_pred -----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceE
Q 008723 383 -----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQ 450 (556)
Q Consensus 383 -----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~iv 450 (556)
...++.+++++||||||+.|... +|..|+++|+ +.+..+.+. ..
T Consensus 75 ~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~-- 130 (168)
T PF00158_consen 75 KGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSD--------KP-- 130 (168)
T ss_dssp SSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSS--------SE--
T ss_pred cccccccccccCCceeeccceEEeecchhhhHHH--------------HHHHHHHHHhhchhcccccc--------cc--
Confidence 24566788999999999999988 9999999999 544444222 11
Q ss_pred EecCceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 451 MDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 451 id~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
-..++.+|++++ .++++.+..++|+.+++|...
T Consensus 131 -~~~~~RiI~st~-~~l~~~v~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 131 -VPVDVRIIASTS-KDLEELVEQGRFREDLYYRLN 163 (168)
T ss_dssp -EE--EEEEEEES-S-HHHHHHTTSS-HHHHHHHT
T ss_pred -ccccceEEeecC-cCHHHHHHcCCChHHHHHHhc
Confidence 223677777766 689999999999988887643
No 57
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.62 E-value=9.3e-16 Score=165.68 Aligned_cols=159 Identities=20% Similarity=0.362 Sum_probs=122.8
Q ss_pred ccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc----ccCccccchHHH
Q 008723 302 KKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT----QAGYVGEDVESI 374 (556)
Q Consensus 302 ~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~----~sgyvG~~~e~~ 374 (556)
..-+|.|+.|+++.+.+.+++....+|||.|++||||.++|++|++.. +.||+.+||..+. ++.++|+. ...
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe-kGA 219 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE-KGA 219 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc-ccC
Confidence 344699999999999999999999999999999999999999999888 4599999999654 33344443 222
Q ss_pred HHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEec
Q 008723 375 LYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDT 453 (556)
Q Consensus 375 l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~ 453 (556)
.+.......+.++.+++++||||||..|..+ +|..||++|+ +.+..+.+ ...+.+
T Consensus 220 FTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~--------~~~i~v-- 275 (464)
T COG2204 220 FTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGG--------NKPIKV-- 275 (464)
T ss_pred cCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCC--------Ccccce--
Confidence 2222223345677889999999999999988 9999999999 44444422 233444
Q ss_pred CceEEEecCCCcChHHHHHhcccccccccCChhh
Q 008723 454 KDILFICGGAFVDLEKTISERRQDSSIGFGAPVR 487 (556)
Q Consensus 454 rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~ 487 (556)
|+.+|++++ .+|.+.+..++|+.+++|.+.+.
T Consensus 276 -dvRiIaaT~-~dL~~~v~~G~FReDLyyRLnV~ 307 (464)
T COG2204 276 -DVRIIAATN-RDLEEEVAAGRFREDLYYRLNVV 307 (464)
T ss_pred -eeEEEeecC-cCHHHHHHcCCcHHHHHhhhccc
Confidence 455666655 79999999999999999987763
No 58
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.62 E-value=6.1e-15 Score=167.29 Aligned_cols=183 Identities=23% Similarity=0.321 Sum_probs=131.1
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
.+..+...+++ |.|.+.+++.|.+.+... .. ...... .....+.+++|+||||||||++|
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~~-~~---~~~~~~---------------~~~~~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEYL-RE---PSRFQK---------------LGGKIPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHHh-hC---HHHHHh---------------cCCCCCCcEEEECCCCCCHHHHH
Confidence 34556667777 799999999999887531 10 000000 00122467999999999999999
Q ss_pred HHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 343 raLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
+++|++++.+|+.++++++.. .|+|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++
T Consensus 203 ~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a~~----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 203 KAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred HHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHHHh----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 999999999999999998874 477776 5677888877642 3789999999999987765433333334456888
Q ss_pred HHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHH-hcccccccccCChhhhhh
Q 008723 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 423 ~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
.||..|||. .....+++|+|+|..+. +.++. ..||+..+.++.|+.+..
T Consensus 277 ~lL~~mdg~-------------------~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 277 QMLVEMDGF-------------------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred HHHHhhhcc-------------------cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 888888852 12345777888887764 44444 369999999999986543
No 59
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.62 E-value=5.7e-15 Score=156.73 Aligned_cols=169 Identities=28% Similarity=0.411 Sum_probs=114.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++++++.|.+++.....+ .......| ..++.++||+||||||||++|+++|+.++.+|+
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~---~~~~~~~g---------------~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKH---PELFEEVG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 899999999999998643221 11111111 123478999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH---hcc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EGT 431 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L---Eg~ 431 (556)
.+.+.++.. .|+|.. ...++.+|..+.. ..++||||||+|.+...+.....+.. ..++..|++++ ++.
T Consensus 186 ~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~---~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 186 RVVGSELVR-KYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAELDGF 256 (364)
T ss_pred ecchHHHHH-HhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCcc---HHHHHHHHHHHHHhhCC
Confidence 999888764 477776 5667777766543 36789999999999776543222221 22444555544 320
Q ss_pred ccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhh
Q 008723 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 432 ~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~ 489 (556)
-...++.+|+|+|..+ ++..+ +..+|+..+.|+.|+.++
T Consensus 257 -------------------~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 257 -------------------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred -------------------CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 0123567777777665 33443 346888899999998554
No 60
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=6.2e-16 Score=165.58 Aligned_cols=156 Identities=24% Similarity=0.398 Sum_probs=129.5
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc----ccccCccccchHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT----LTQAGYVGEDVESILY 376 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~----l~~sgyvG~~~e~~l~ 376 (556)
-+|.|+.|..+.+.++.++.+..+|||.|++||||..+||+|++.. ..||+.+||+. +.++..+|+. .....
T Consensus 225 iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFT 303 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFT 303 (550)
T ss_pred ceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-ccccc
Confidence 4699999999999999999999999999999999999999999988 46999999995 4455667776 45556
Q ss_pred HHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCc
Q 008723 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKD 455 (556)
Q Consensus 377 ~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rn 455 (556)
..+....+.++.+.++.||||||-.|... +|..||++|. |.+-.+. ....+.+|.
T Consensus 304 GA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG--------~~r~ikVDV-- 359 (550)
T COG3604 304 GAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVG--------GDRTIKVDV-- 359 (550)
T ss_pred cchhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecC--------CCceeEEEE--
Confidence 66667778888999999999999999988 9999999998 4444443 334556654
Q ss_pred eEEEecCCCcChHHHHHhcccccccccCChh
Q 008723 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 456 ii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
.+|+++| .||++.++.++|+.+++|...+
T Consensus 360 -RiIAATN-RDL~~~V~~G~FRaDLYyRLsV 388 (550)
T COG3604 360 -RVIAATN-RDLEEMVRDGEFRADLYYRLSV 388 (550)
T ss_pred -EEEeccc-hhHHHHHHcCcchhhhhhcccc
Confidence 4566666 7999999999999999997665
No 61
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-15 Score=164.97 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=124.4
Q ss_pred hccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc----ccccCccccchHH
Q 008723 301 LKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT----LTQAGYVGEDVES 373 (556)
Q Consensus 301 ~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~----l~~sgyvG~~~e~ 373 (556)
+..-+|.|+.|.++....+.++....+|||.|++||||..+|++|++.. +.||+.+||.. +.++..+|+. ..
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye-~G 322 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE-KG 322 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC-Cc
Confidence 3345689999999999999999999999999999999999999999888 66999999994 4445555655 22
Q ss_pred HHHHHHHh-cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEE
Q 008723 374 ILYKLLAQ-AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQM 451 (556)
Q Consensus 374 ~l~~lf~~-a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivi 451 (556)
..+.+-.. ..+.++.++++.||||||..|... +|..||++|+++ +..+.+. ..+.+
T Consensus 323 AFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~rvG~t--------~~~~v 380 (560)
T COG3829 323 AFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERVGGT--------KPIPV 380 (560)
T ss_pred cccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHHHHHhhceEEecCCC--------Cceee
Confidence 22222221 445677889999999999999988 999999999944 4444333 22333
Q ss_pred ecCceEEEecCCCcChHHHHHhcccccccccCChh
Q 008723 452 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 452 d~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
|+.+|+|+| .++.+++..++|+.+++|.+.+
T Consensus 381 ---DVRIIAATN-~nL~~~i~~G~FReDLYYRLNV 411 (560)
T COG3829 381 ---DVRIIAATN-RNLEKMIAEGTFREDLYYRLNV 411 (560)
T ss_pred ---EEEEEeccC-cCHHHHHhcCcchhhheeeece
Confidence 566777766 7899999999999999998776
No 62
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=2.4e-14 Score=127.82 Aligned_cols=130 Identities=28% Similarity=0.497 Sum_probs=93.4
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~ 407 (556)
|||+||||||||++|+.+|+.++.+++.+++.++.. .+.+.. ++.+..+|..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~-~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS-SYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT-SSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc-cccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 689999999999999999999999999999999883 355655 67778888775432 137999999999998874
Q ss_pred cccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccC
Q 008723 408 SLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFG 483 (556)
Q Consensus 408 ~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~ 483 (556)
..........+++.|+..|+.... ..+++++|+|++..+ +++.+.++||+..+.++
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~------------------~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSS------------------KNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTT------------------TSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred --ccccccccccccceeeeccccccc------------------ccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 111222234588899999983111 134578888887754 33433327777777664
No 63
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.53 E-value=7.5e-14 Score=160.80 Aligned_cols=173 Identities=28% Similarity=0.399 Sum_probs=122.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++++.|.+.+..... +..+....+ ..++.++||+||||||||++|++||+++
T Consensus 176 ~~~d-i~G~~~~~~~l~~~i~~~~~---~~~~~~~~g---------------i~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 176 TYED-IGGLKEAKEKIREMVELPMK---HPELFEHLG---------------IEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHhh---CHHHHHhcC---------------CCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4555 79999999999998864321 111111111 1235789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++.++.. .|.|.. +..++.+|+.+.. ..++||||||||.+...+..... .....+++.|+.+|+
T Consensus 237 ~~~~i~i~~~~i~~-~~~g~~-~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~---~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 237 GAYFISINGPEIMS-KYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVTG---EVEKRVVAQLLTLMD 307 (733)
T ss_pred CCeEEEEecHHHhc-ccccHH-HHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCcc---hHHHHHHHHHHHHhh
Confidence 99999999998874 588877 6678888887653 36789999999999877543211 112458899999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
+.. ....+++|+++|..+ ++..+. ..||+..+.++.|+.+.
T Consensus 308 ~l~-------------------~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 308 GLK-------------------GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred ccc-------------------cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 411 122456666666544 445443 35899999999987554
No 64
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.1e-14 Score=156.21 Aligned_cols=142 Identities=29% Similarity=0.418 Sum_probs=112.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC-CeeeeccccccccCccccchHHHHHHHHHhcccchhc----cCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA----AQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~-~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~----a~~~VLfLDEID 400 (556)
++|||+||||||||++||.|.+.||. +--.++..+++ .+|+|++ |+.++++|..|+..... ..=.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 78999999999999999999999975 34558888888 4699999 88999999988754332 122599999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH--HHHhccccc
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK--TISERRQDS 478 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~--~i~~rr~~~ 478 (556)
+++..|++...+..+. +.|.++||.-||| +-...||++|.-+|..||.| +++.+|+.-
T Consensus 335 AICKqRGS~~g~TGVh-D~VVNQLLsKmDG-------------------VeqLNNILVIGMTNR~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVH-DTVVNQLLSKMDG-------------------VEQLNNILVIGMTNRKDLIDEALLRPGRLEV 394 (744)
T ss_pred HHHHhcCCCCCCCCcc-HHHHHHHHHhccc-------------------HHhhhcEEEEeccCchhhHHHHhcCCCceEE
Confidence 9999987765444433 5599999999997 22346889999889899865 456678888
Q ss_pred ccccCChhhhh
Q 008723 479 SIGFGAPVRAN 489 (556)
Q Consensus 479 ~i~f~~p~~~~ 489 (556)
.++..+|+.+-
T Consensus 395 qmEIsLPDE~g 405 (744)
T KOG0741|consen 395 QMEISLPDEKG 405 (744)
T ss_pred EEEEeCCCccC
Confidence 88888887543
No 65
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-14 Score=165.67 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=129.6
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..+++ |.|++.++..|++.|...|.... + .......++++|||+||||||||++|+++|..
T Consensus 262 v~fd~-vggl~~~i~~LKEmVl~PLlyPE---~---------------f~~~~itpPrgvL~~GppGTGkTl~araLa~~ 322 (1080)
T KOG0732|consen 262 VGFDS-VGGLENYINQLKEMVLLPLLYPE---F---------------FDNFNITPPRGVLFHGPPGTGKTLMARALAAA 322 (1080)
T ss_pred cCccc-cccHHHHHHHHHHHHHhHhhhhh---H---------------hhhcccCCCcceeecCCCCCchhHHHHhhhhh
Confidence 34566 89999999999999976543211 1 11223346789999999999999999999988
Q ss_pred h-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHH
Q 008723 349 V-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (556)
Q Consensus 349 l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~ 423 (556)
+ ...|+.-+..+.. ++|+|+. ++.++-+|+.+.-. ++.|||+||||-|++.|.+-...-+.+ +...
T Consensus 323 ~s~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~S---IvST 393 (1080)
T KOG0732|consen 323 CSRGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHAS---IVST 393 (1080)
T ss_pred hcccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhh---HHHH
Confidence 8 3467777777877 5699999 89999999988744 899999999999999875433222333 8999
Q ss_pred HHHHHhccccccCCCCcccCCCCCceEEecCc-eEEEecCCCcChHH-HH-HhcccccccccCChhhhh
Q 008723 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKD-ILFICGGAFVDLEK-TI-SERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 424 LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rn-ii~I~t~n~~dl~~-~i-~~rr~~~~i~f~~p~~~~ 489 (556)
||.+|+| ++++- +++|.|+|..+-.+ ++ +.++|+..++|++|+.+.
T Consensus 394 LLaLmdG--------------------ldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 394 LLALMDG--------------------LDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred HHHhccC--------------------CCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 9999996 34443 56666777766444 33 357999999999996443
No 66
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.52 E-value=2.4e-14 Score=140.07 Aligned_cols=180 Identities=21% Similarity=0.331 Sum_probs=81.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC---
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~--- 351 (556)
|+||+.+|++|..+.. ...|+||+||||||||++|+.++..+.-
T Consensus 5 I~GQe~aKrAL~iAAa---------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~ 51 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAA---------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTE 51 (206)
T ss_dssp SSSTHHHHHHHHHHHH---------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--CCE
T ss_pred hcCcHHHHHHHHHHHc---------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCch
Confidence 8999999999998875 2379999999999999999999987721
Q ss_pred -Ceeeecccc-ccc----c------CccccchHHHHHHHHHh----cccchhccCCeEEEEecccccchhhhcccccccC
Q 008723 352 -PFVIADATT-LTQ----A------GYVGEDVESILYKLLAQ----AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (556)
Q Consensus 352 -~fv~i~~s~-l~~----s------gyvG~~~e~~l~~lf~~----a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~ 415 (556)
..+++..-. +.. . -|.--........++.. ..+.+..++.+||||||+..+...
T Consensus 52 ~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~---------- 121 (206)
T PF01078_consen 52 EEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS---------- 121 (206)
T ss_dssp ECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH----------
T ss_pred HHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH----------
Confidence 111111000 000 0 00000000011122211 344677889999999999988777
Q ss_pred chHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCC-hhhhhhcccc
Q 008723 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA-PVRANMRAGV 494 (556)
Q Consensus 416 s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~-p~~~~~~~~~ 494 (556)
+++.|++.||...+.|... ...+..-.++++|+|.|. +..+|-. +...-.|+
T Consensus 122 ----vld~Lr~ple~g~v~i~R~--------~~~~~~Pa~f~lv~a~NP-------------cpCG~~~~~~~~C~Cs-- 174 (206)
T PF01078_consen 122 ----VLDALRQPLEDGEVTISRA--------GGSVTYPARFLLVAAMNP-------------CPCGYYGDPDNRCRCS-- 174 (206)
T ss_dssp ----HHHHHHHHHHHSBEEEEET--------TEEEEEB--EEEEEEE-S-------------------------------
T ss_pred ----HHHHHHHHHHCCeEEEEEC--------CceEEEecccEEEEEecc-------------cccccccccccccccc--
Confidence 9999999999666665333 334556678899998885 4555533 22222111
Q ss_pred chhHhHHHHHhhcCchHHHHc--CCCHHHhccCCceeeCCCCCHHH
Q 008723 495 TDAAVTSSLLESVESSDLIAY--GLIPEFVGRFPILVSLTALTEDQ 538 (556)
Q Consensus 495 ~~~~~~~~l~~~l~~~dl~~~--~l~Pell~R~~~iI~f~~ls~ee 538 (556)
+.++.+| .+.-.+++|||+.+.++.++.+|
T Consensus 175 --------------~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 175 --------------PRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ----------------------------------------------
T ss_pred --------------ccccccccccccccccccccccccccccccCC
Confidence 1222222 26789999999999999888764
No 67
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.52 E-value=6.4e-14 Score=167.77 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=100.7
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCc----------cc-----------------------
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGY----------VG----------------------- 368 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgy----------vG----------------------- 368 (556)
..++++|||+||||||||++||+||.+++.||+.|+++++.+. + +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhc
Confidence 4567999999999999999999999999999999999988743 2 11
Q ss_pred --------cch-HHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCC
Q 008723 369 --------EDV-ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 439 (556)
Q Consensus 369 --------~~~-e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g 439 (556)
..+ ...++.+|+.|.. ..||||||||||.+..... ....+.+|+..|+|..-
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk----~SPCIIFIDEIDaL~~~ds---------~~ltL~qLLneLDg~~~------ 1766 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKA----MSPCIIWIPNIHDLNVNES---------NYLSLGLLVNSLSRDCE------ 1766 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHH----CCCeEEEEEchhhcCCCcc---------ceehHHHHHHHhccccc------
Confidence 111 1126777877763 4899999999999986511 11147889999985211
Q ss_pred cccCCCCCceEEecCceEEEecCCCcCh-HHHH-HhcccccccccCChhhhh
Q 008723 440 ARKHPRGDSIQMDTKDILFICGGAFVDL-EKTI-SERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 440 ~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i-~~rr~~~~i~f~~p~~~~ 489 (556)
...++++++|+|+|..+. |.++ +.+||+..|.++.|+...
T Consensus 1767 ----------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~ 1808 (2281)
T CHL00206 1767 ----------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQ 1808 (2281)
T ss_pred ----------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchh
Confidence 013456788888887774 4443 447999999998887433
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=2.8e-13 Score=141.78 Aligned_cols=107 Identities=32% Similarity=0.483 Sum_probs=76.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++||+++++.|..++.....+ ..+..+++|+||||||||++|+++|+++
T Consensus 23 ~~~~-~vG~~~~~~~l~~~l~~~~~~--------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 23 SLDE-FIGQEKVKENLKIFIEAAKKR--------------------------GEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CHHH-hcCcHHHHHHHHHHHHHHHhc--------------------------CCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4455 799999999998887521000 0124689999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..+..+++..+.. ...+..++... ..+.||||||||.+... +++.|+..|+
T Consensus 76 ~~~~~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e 127 (328)
T PRK00080 76 GVNIRITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAME 127 (328)
T ss_pred CCCeEEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHH
Confidence 98877666543321 12233333322 25679999999998765 6777888888
Q ss_pred cc
Q 008723 430 GT 431 (556)
Q Consensus 430 g~ 431 (556)
..
T Consensus 128 ~~ 129 (328)
T PRK00080 128 DF 129 (328)
T ss_pred hc
Confidence 54
No 69
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.1e-14 Score=144.92 Aligned_cols=172 Identities=22% Similarity=0.293 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|-|.-..+..+.+.|..|..+ ..+. .+--..++..++|+||||||||++|+++|..++..|+
T Consensus 134 ~ggl~~qirelre~ielpl~n---p~lf---------------~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTN---PELF---------------LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred hCChHHHHHHHHhheEeeccC---chhc---------------cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 678888888888877644221 1111 1112345789999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.+.++.+. .+|.|+. .+.+++.|..+... .+||||+||||++...+.+.. ..+.+.+|.+|.+++++ ...
T Consensus 196 ~v~ss~lv-~kyiGEs-aRlIRemf~yA~~~----~pciifmdeiDAigGRr~se~---Ts~dreiqrTLMeLlnq-mdg 265 (388)
T KOG0651|consen 196 KVVSSALV-DKYIGES-ARLIRDMFRYAREV----IPCIIFMDEIDAIGGRRFSEG---TSSDREIQRTLMELLNQ-MDG 265 (388)
T ss_pred EeeHhhhh-hhhcccH-HHHHHHHHHHHhhh----CceEEeehhhhhhccEEeccc---cchhHHHHHHHHHHHHh-hcc
Confidence 99999998 4699999 89999999988754 679999999999887653322 33346689999888872 000
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHH-HHHhcccccccccCChhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEK-TISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~-~i~~rr~~~~i~f~~p~~~~ 489 (556)
. . ....+.+|+|+|..+ |+. +++++|.++.+..+.|....
T Consensus 266 f--------------d-~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 266 F--------------D-TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred c--------------h-hcccccEEEecCCccccchhhcCCccccceeccCCcchhh
Confidence 0 0 112355677777666 443 57788999999998887443
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.51 E-value=2.9e-13 Score=139.55 Aligned_cols=107 Identities=28% Similarity=0.424 Sum_probs=74.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ++||+++++.|..++...-. . .....+++|+||||||||++|+++|+++
T Consensus 2 ~~~~-~iG~~~~~~~l~~~l~~~~~------~--------------------~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 2 LLAE-FIGQEKVKEQLQLFIEAAKM------R--------------------QEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CHHH-HcCHHHHHHHHHHHHHHHHh------c--------------------CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3556 79999999999887742100 0 0123679999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.++..+.+..... ...+...+... ..+.+||||||+.+... .++.|+.+|+
T Consensus 55 ~~~~~~~~~~~~~~--------~~~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~ 106 (305)
T TIGR00635 55 GVNLKITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAME 106 (305)
T ss_pred CCCEEEeccchhcC--------chhHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHh
Confidence 88776665543321 11222222221 24679999999998876 7788888988
Q ss_pred cc
Q 008723 430 GT 431 (556)
Q Consensus 430 g~ 431 (556)
..
T Consensus 107 ~~ 108 (305)
T TIGR00635 107 DF 108 (305)
T ss_pred hh
Confidence 43
No 71
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=9.3e-14 Score=141.28 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=81.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccc-cCcccc----chHHHHHHHHH--------------hccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-AGYVGE----DVESILYKLLA--------------QAEF 384 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~-sgyvG~----~~e~~l~~lf~--------------~a~~ 384 (556)
...++||.||||||||++|++||+.++.+|+.++|..-.. +.++|. .....+..... ....
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4578999999999999999999999999999998874221 122222 11111111100 0111
Q ss_pred chhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 385 ~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
..+...+++|+||||+++.++ +++.|+.+||+..+.+++... ...++....++.+|+|+|.
T Consensus 100 ~~A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~-----~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRG-----TSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHHHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCC-----CCceEecCCCCEEEEeeCC
Confidence 112245679999999998887 999999999977777765421 1223334567778888886
Q ss_pred c
Q 008723 465 V 465 (556)
Q Consensus 465 ~ 465 (556)
.
T Consensus 161 ~ 161 (262)
T TIGR02640 161 V 161 (262)
T ss_pred c
Confidence 4
No 72
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3e-13 Score=138.44 Aligned_cols=186 Identities=21% Similarity=0.262 Sum_probs=122.0
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
...+....++..|.+- ..|+.|...+.... ++... .....+..-.+-|||+||||||||+++
T Consensus 133 Pa~eF~glWEsLiyds-~lK~~ll~Ya~s~l-~fsek----------------~vntnlIt~NRliLlhGPPGTGKTSLC 194 (423)
T KOG0744|consen 133 PAAEFDGLWESLIYDS-NLKERLLSYAASAL-LFSEK----------------KVNTNLITWNRLILLHGPPGTGKTSLC 194 (423)
T ss_pred cchhhhhhHHHHhhcc-cHHHHHHHHHHHHH-HHHhc----------------CCCCceeeeeeEEEEeCCCCCChhHHH
Confidence 4556777777766554 35666655443211 11000 011222233577999999999999999
Q ss_pred HHHHHHhC---------CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCe--EEEEecccccchhhhcccc
Q 008723 343 KTLARHVN---------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQG--MVYIDEVDKITKKAESLNI 411 (556)
Q Consensus 343 raLA~~l~---------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~--VLfLDEID~l~~~r~~~~~ 411 (556)
|+||+.+. ..++++++..+. ++|++++ .+.+.++|++....++. .++ .++|||++.|+..|++...
T Consensus 195 KaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVfvLIDEVESLa~aR~s~~S 271 (423)
T KOG0744|consen 195 KALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVFVLIDEVESLAAARTSASS 271 (423)
T ss_pred HHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEEEEeHHHHHHHHHHHhhhc
Confidence 99999882 367899999999 5699999 88999999887654433 333 5789999999998876555
Q ss_pred cccCc-hHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhh
Q 008723 412 SRDVS-GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (556)
Q Consensus 412 ~~~~s-~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~ 488 (556)
+.+.+ ..++.++||..||. .-...|+++.+|+|-.+-.|..-=.|-+-..+.+.|...
T Consensus 272 ~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 272 RNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred CCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 54443 36799999999992 112346777778776553333222344445555666533
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.7e-13 Score=154.61 Aligned_cols=108 Identities=31% Similarity=0.417 Sum_probs=75.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ||||+++++.|..++... + ....+||+||+||||||+|++||+.+
T Consensus 14 tFdE-VIGQe~Vv~~L~~aL~~g--R----------------------------L~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 14 DFAS-LVGQEHVVRALTHALDGG--R----------------------------LHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred cHHH-HcCcHHHHHHHHHHHhcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887521 0 11346999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. +++++..+- .| .+.++++++.........+..||||||+|.|+..
T Consensus 63 nCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~-----rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~ 134 (830)
T PRK07003 63 NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN-----RG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH 134 (830)
T ss_pred cCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc-----cc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH
Confidence 752 222222211 11 2345566655443333346689999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++.||+.||+
T Consensus 135 --------------A~NALLKtLEE 145 (830)
T PRK07003 135 --------------AFNAMLKTLEE 145 (830)
T ss_pred --------------HHHHHHHHHHh
Confidence 89999999993
No 74
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.48 E-value=2.7e-13 Score=142.33 Aligned_cols=145 Identities=22% Similarity=0.311 Sum_probs=99.4
Q ss_pred CCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHh-
Q 008723 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (556)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~- 381 (556)
|.|+.|+.+.+.+..++....+|||.|++||||+++|++|+... +.||+.++|..+.+. ..-..+|..
T Consensus 3 G~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~--------~l~~~lfG~~ 74 (329)
T TIGR02974 3 GESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN--------LLDSELFGHE 74 (329)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH--------HHHHHHhccc
Confidence 44555555555556666677899999999999999999999877 369999999865421 111122221
Q ss_pred ----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCceE
Q 008723 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQ 450 (556)
Q Consensus 382 ----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~iv 450 (556)
....+..+.+++||||||+.|... +|..|+.+|+. ....+.+. .
T Consensus 75 ~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~-----------~ 129 (329)
T TIGR02974 75 AGAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLRVIEYGEFERVGGS-----------Q 129 (329)
T ss_pred cccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHHHHHcCcEEecCCC-----------c
Confidence 122355678899999999999988 99999999983 32222111 1
Q ss_pred EecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 451 MDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 451 id~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
....++.+|++++ .++.+.+..+.|+..++|..
T Consensus 130 ~~~~~~RiI~at~-~~l~~~~~~g~fr~dL~~rl 162 (329)
T TIGR02974 130 TLQVDVRLVCATN-ADLPALAAEGRFRADLLDRL 162 (329)
T ss_pred eeccceEEEEech-hhHHHHhhcCchHHHHHHHh
Confidence 1234567777765 56777777777766666554
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.48 E-value=2.3e-13 Score=156.68 Aligned_cols=119 Identities=25% Similarity=0.363 Sum_probs=87.5
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+. |+|+++.++.+.+.+... .+.+++|+||||||||++|++||+.
T Consensus 179 ~~l~~-~igr~~ei~~~~~~L~~~-------------------------------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 179 GKIDP-LIGREDELERTIQVLCRR-------------------------------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCCCc-ccCcHHHHHHHHHHHhcC-------------------------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 34555 899999999877666411 2378999999999999999999998
Q ss_pred h----------CCCeeeeccccccc-cCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCch
Q 008723 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 349 l----------~~~fv~i~~s~l~~-sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~ 417 (556)
+ +..++.+++..+.. ..|.|+. ++.++++++.+.. ..+.||||||||.+........ +.
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~-----~~ 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSG-----GS 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCC-----cc
Confidence 7 66788999887763 4578877 7788888877642 2578999999999976532111 11
Q ss_pred HHHHHHHHHHHh
Q 008723 418 EGVQQALLKMLE 429 (556)
Q Consensus 418 ~~v~~~LL~~LE 429 (556)
..+++.|+..|+
T Consensus 297 ~~~~~~L~~~l~ 308 (731)
T TIGR02639 297 MDASNLLKPALS 308 (731)
T ss_pred HHHHHHHHHHHh
Confidence 226677777765
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.4e-13 Score=151.64 Aligned_cols=108 Identities=31% Similarity=0.447 Sum_probs=76.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ||||+.+++.|..++... + ....+||+||+||||||+|+.||+.+
T Consensus 14 tFdd-VIGQe~vv~~L~~al~~g--R----------------------------LpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 14 DFTT-LVGQEHVVRALTHALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred cHHH-HcCcHHHHHHHHHHHHhC--C----------------------------CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999999888522 0 11347999999999999999999999
Q ss_pred CC-----------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 350 NV-----------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 350 ~~-----------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
++ .+++++..+. .+ .+.++++++.........+..|+||||+|
T Consensus 63 nC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~-----~g---VDdIReLie~~~~~P~~gr~KViIIDEah 134 (700)
T PRK12323 63 NCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN-----RG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVH 134 (700)
T ss_pred cCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc-----CC---HHHHHHHHHHHHhchhcCCceEEEEEChH
Confidence 76 1222222110 11 23456666554433334566899999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
+|+.. .+|.||+.||+
T Consensus 135 ~Ls~~--------------AaNALLKTLEE 150 (700)
T PRK12323 135 MLTNH--------------AFNAMLKTLEE 150 (700)
T ss_pred hcCHH--------------HHHHHHHhhcc
Confidence 99877 89999999983
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=7.6e-13 Score=144.08 Aligned_cols=108 Identities=30% Similarity=0.361 Sum_probs=74.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+||||||+|+.+|+.+
T Consensus 16 ~f~d-vVGQe~iv~~L~~~i~~~--r----------------------------i~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 16 FFRD-VIHQDLAIGALQNALKSG--K----------------------------IGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred CHHH-HhChHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4444 899999999988887521 0 01348999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++..- .| ...++++.+............|+||||+|.|...
T Consensus 65 nce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~-----~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~ 136 (484)
T PRK14956 65 NCENPIGNEPCNECTSCLEITKGISSDVLEIDAASN-----RG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ 136 (484)
T ss_pred CcccccCccccCCCcHHHHHHccCCccceeechhhc-----cc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH
Confidence 752 223332211 11 2334555444332222345679999999999877
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+++||+.||.
T Consensus 137 --------------A~NALLKtLEE 147 (484)
T PRK14956 137 --------------SFNALLKTLEE 147 (484)
T ss_pred --------------HHHHHHHHhhc
Confidence 89999999983
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=7.8e-13 Score=142.85 Aligned_cols=81 Identities=33% Similarity=0.523 Sum_probs=62.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.+++|+||||||||++|++||+.++.+|+.+++.... ...++.+++.+..........||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999998876321 2234444444432222336789999999998876
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|+..|+
T Consensus 108 --------------~q~~LL~~le 117 (413)
T PRK13342 108 --------------QQDALLPHVE 117 (413)
T ss_pred --------------HHHHHHHHhh
Confidence 8899999987
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=99.44 E-value=9.8e-13 Score=137.29 Aligned_cols=110 Identities=28% Similarity=0.434 Sum_probs=74.6
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
+.|+.+ ++ |+||+++++.|..++... ...|+||+||||||||++
T Consensus 7 yrP~~l----~~-~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 7 YRPTKL----DD-IVGNEDAVSRLQVIARDG-------------------------------NMPNLILSGPPGTGKTTS 50 (319)
T ss_pred cCCCCH----HH-hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHH
Confidence 455544 44 799999999887766411 125799999999999999
Q ss_pred HHHHHHHhCC-----CeeeeccccccccCccccchHHHHHHHHH---hcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 342 AKTLARHVNV-----PFVIADATTLTQAGYVGEDVESILYKLLA---QAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 342 AraLA~~l~~-----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~---~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
|+++|+++.. .++++++++.. |.+ .+++.+. .....+......||+|||+|.++..
T Consensus 51 a~~la~~l~~~~~~~~~~eln~sd~~-----~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------- 114 (319)
T PLN03025 51 ILALAHELLGPNYKEAVLELNASDDR-----GID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------- 114 (319)
T ss_pred HHHHHHHHhcccCccceeeecccccc-----cHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------
Confidence 9999999832 35566665432 211 2333222 1111111234679999999999877
Q ss_pred cCchHHHHHHHHHHHh
Q 008723 414 DVSGEGVQQALLKMLE 429 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LE 429 (556)
.|+.|++.||
T Consensus 115 ------aq~aL~~~lE 124 (319)
T PLN03025 115 ------AQQALRRTME 124 (319)
T ss_pred ------HHHHHHHHHh
Confidence 8999999998
No 80
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.43 E-value=9.1e-13 Score=138.10 Aligned_cols=168 Identities=27% Similarity=0.351 Sum_probs=112.8
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
....+...+.+.++|+++++..+..++. ...|+||.||||||||++|
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~---------------------------------~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL---------------------------------AGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH---------------------------------cCCCEEEECCCCccHHHHH
Confidence 3445666777778999988888777764 2489999999999999999
Q ss_pred HHHHHHhCCCeeeeccc-cccccCccccchHHHH---HHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 343 KTLARHVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 343 raLA~~l~~~fv~i~~s-~l~~sgyvG~~~e~~l---~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
+.+|+.++.+|+++.|+ ++..+..+|...-... ...+.-....+-.+..+|+|+|||++..++
T Consensus 61 ~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------- 127 (329)
T COG0714 61 RALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------- 127 (329)
T ss_pred HHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------
Confidence 99999999999999999 4444445555422211 111111111121222269999999999888
Q ss_pred HHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC------cChHHHHHhcc-cccccccCChh
Q 008723 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF------VDLEKTISERR-QDSSIGFGAPV 486 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~------~dl~~~i~~rr-~~~~i~f~~p~ 486 (556)
+++.|+++|+++++.+++... .... ..+++|+|.|. ..+.+++.+|. +...++|+.+.
T Consensus 128 -~q~aLl~~l~e~~vtv~~~~~-~~~~--------~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 128 -VQNALLEALEERQVTVPGLTT-IRLP--------PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred -HHHHHHHHHhCcEEEECCcCC-cCCC--------CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 999999999998888876642 1112 22444555442 23455555555 66666776443
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=5.2e-13 Score=138.35 Aligned_cols=133 Identities=26% Similarity=0.405 Sum_probs=99.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC---eeeeccccccccCccccchHHHHHHHHHhcccchh-ccCCeEEEEecccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDK 401 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~---fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~-~a~~~VLfLDEID~ 401 (556)
..++|+||||||||++|+.|+.-...+ |++++++... .+.++.+|+.+..... ..+.+|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 679999999999999999999888655 7777776433 4567777876654332 24678999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccc
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~ 481 (556)
+... .|+.||..+| .-.|++|.+++.+..
T Consensus 234 FNks--------------QQD~fLP~VE-----------------------~G~I~lIGATTENPS-------------- 262 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVE-----------------------NGDITLIGATTENPS-------------- 262 (554)
T ss_pred hhhh--------------hhhcccceec-----------------------cCceEEEecccCCCc--------------
Confidence 9877 8888888876 224566776653321
Q ss_pred cCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 482 f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
..++..|++|.. ++-++.|..++++.||...++.|.+
T Consensus 263 ---------------------------------Fqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 263 ---------------------------------FQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred ---------------------------------cchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhcc
Confidence 114567788876 6678899999999999988887764
No 82
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.7e-13 Score=147.38 Aligned_cols=169 Identities=25% Similarity=0.345 Sum_probs=126.0
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
.+.|.......+.+.+..... +....+ +....+++++|++||||||||.+++++|++.+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~---~~~~~~---------------s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~ 246 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLR---HPALFK---------------SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFL 246 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhc---chhhhh---------------hcCCCCCCCccccCCCCCChHHHHHHHHHHhCcee
Confidence 378888888888888864321 111111 12233568999999999999999999999999999
Q ss_pred eeeccccccccCccccchHHHHHHHHHhcccchhccC-CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 354 v~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~-~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
+.+++.++.. +|.|++ ++.+++.|+.+... + +.+|||||+|.+.+++..... -..++..+|+.+|||--
T Consensus 247 ~~i~~peli~-k~~gEt-e~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 247 FLINGPELIS-KFPGET-ESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLK 316 (693)
T ss_pred EecccHHHHH-hcccch-HHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCc
Confidence 9999999994 588888 88999999988644 4 899999999999998665433 23458999999999510
Q ss_pred cccCCCCcccCCCCCceEEecCceEEEec-CCCcChHHHHHhcccccccccCChhhhh
Q 008723 433 VNVPEKGARKHPRGDSIQMDTKDILFICG-GAFVDLEKTISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 433 v~ipe~g~r~~~~~~~ivid~rnii~I~t-~n~~dl~~~i~~rr~~~~i~f~~p~~~~ 489 (556)
...+++++.+ .+...++..++++||+..+..+.|+...
T Consensus 317 -------------------~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 317 -------------------PDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred -------------------CcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchh
Confidence 1233444444 4444566666667999999999988443
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.3e-12 Score=144.61 Aligned_cols=108 Identities=28% Similarity=0.342 Sum_probs=77.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 ~f~d-ivGq~~v~~~L~~~~~~~--~----------------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 14 CFQE-VIGQAPVVRALSNALDQQ--Y----------------------------LHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CHHH-hcCCHHHHHHHHHHHHhC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4455 899999999999888521 0 12347999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++.+- .+ ...++++.+............|+||||+|+|+..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~-----~~---v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 63 NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR-----TK---VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH 134 (509)
T ss_pred cCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc-----CC---HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH
Confidence 753 334443321 11 2345666655444333446689999999999887
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+++||+.||.
T Consensus 135 --------------a~naLLk~LEe 145 (509)
T PRK14958 135 --------------SFNALLKTLEE 145 (509)
T ss_pred --------------HHHHHHHHHhc
Confidence 89999999993
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.3e-12 Score=143.08 Aligned_cols=107 Identities=30% Similarity=0.426 Sum_probs=74.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+++++.|..++... ..+..+||+|||||||||+|+++|+.+
T Consensus 12 ~~~d-ivGq~~i~~~L~~~i~~~------------------------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 12 TFSE-VVGQDHVKKLIINALKKN------------------------------SISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred CHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999888877521 012458999999999999999999998
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
+. .++.++++.. .| ...++++...+..........||||||+|.+...
T Consensus 61 ~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~-----~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~ 132 (472)
T PRK14962 61 NCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN-----RG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE 132 (472)
T ss_pred ccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc-----CC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH
Confidence 65 2444444321 11 2334454444333222345679999999998766
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|+..|+
T Consensus 133 --------------a~~~LLk~LE 142 (472)
T PRK14962 133 --------------AFNALLKTLE 142 (472)
T ss_pred --------------HHHHHHHHHH
Confidence 7899999998
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2e-12 Score=148.37 Aligned_cols=115 Identities=24% Similarity=0.343 Sum_probs=74.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... ++ ...+||+||+|||||++|++||+.+
T Consensus 14 tFdd-IIGQe~Iv~~LknaI~~~--rl----------------------------~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 14 TFEQ-MVGQSHVLHALTNALTQQ--RL----------------------------HHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhC--CC----------------------------CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4455 899999999998887521 10 1336999999999999999999999
Q ss_pred CCCee-e-eccc------ccccc---C---cccc--chHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 350 NVPFV-I-ADAT------TLTQA---G---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 350 ~~~fv-~-i~~s------~l~~s---g---yvG~--~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
++... . ..|. .+... . +.+. .....++++..............|+||||+|+|...
T Consensus 63 nce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------- 134 (944)
T PRK14949 63 NCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------- 134 (944)
T ss_pred cCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------
Confidence 76411 0 0010 00000 0 0011 112345555554433322346679999999999877
Q ss_pred cCchHHHHHHHHHHHh
Q 008723 414 DVSGEGVQQALLKMLE 429 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 ------AqNALLKtLE 144 (944)
T PRK14949 135 ------SFNALLKTLE 144 (944)
T ss_pred ------HHHHHHHHHh
Confidence 9999999999
No 86
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.7e-12 Score=136.04 Aligned_cols=180 Identities=21% Similarity=0.320 Sum_probs=120.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccch
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~ 404 (556)
-++|||+||||||||++||-||+..|..|-.+...++... |......+.++|+=+. ....+-+|||||+|.+..
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWak---kS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAK---KSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHh---hcccceEEEehhhHHHHH
Confidence 3899999999999999999999999999998888888753 4333445566665443 234567899999999999
Q ss_pred hhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHHhcccccccccC
Q 008723 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISERRQDSSIGFG 483 (556)
Q Consensus 405 ~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~~rr~~~~i~f~ 483 (556)
+|....++.+ ...+|..+|- +..+ ..++|++++++|.. ++|-++. .|++..+.|+
T Consensus 458 eRnktymSEa-----qRsaLNAlLf-----------RTGd-------qSrdivLvlAtNrpgdlDsAV~-DRide~veFp 513 (630)
T KOG0742|consen 458 ERNKTYMSEA-----QRSALNALLF-----------RTGD-------QSRDIVLVLATNRPGDLDSAVN-DRIDEVVEFP 513 (630)
T ss_pred HhchhhhcHH-----HHHHHHHHHH-----------Hhcc-------cccceEEEeccCCccchhHHHH-hhhhheeecC
Confidence 9887776644 5555555553 1111 24567777766665 4555555 5889999999
Q ss_pred ChhhhhhccccchhHhHHHHHhhcCchHHHH-cCCCHHHhccCCceeeCCCCCHHHH
Q 008723 484 APVRANMRAGVTDAAVTSSLLESVESSDLIA-YGLIPEFVGRFPILVSLTALTEDQL 539 (556)
Q Consensus 484 ~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~-~~l~Pell~R~~~iI~f~~ls~eeL 539 (556)
+|..++. ...+...|.+.+...+... -++...|+..-...|.+..+..+++
T Consensus 514 LPGeEER-----fkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~ 565 (630)
T KOG0742|consen 514 LPGEEER-----FKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRK 565 (630)
T ss_pred CCChHHH-----HHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHH
Confidence 9997763 3455555666653322222 1222334444456777777555443
No 87
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.6e-12 Score=145.47 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=76.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... .....+||+||+|||||++|+++|+.+
T Consensus 13 tFdd-VIGQe~vv~~L~~aI~~g------------------------------rl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 13 NFNE-LVGQNHVSRALSSALERG------------------------------RLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887521 012567999999999999999999998
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++ .++++++++-. . ...++++..............|+||||+|.|...
T Consensus 62 nC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~-------~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~ 133 (702)
T PRK14960 62 NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRT-------K-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH 133 (702)
T ss_pred CCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccC-------C-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH
Confidence 75 23333332211 1 2345666655544333346689999999999877
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.||
T Consensus 134 --------------A~NALLKtLE 143 (702)
T PRK14960 134 --------------SFNALLKTLE 143 (702)
T ss_pred --------------HHHHHHHHHh
Confidence 8899999998
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.3e-12 Score=145.23 Aligned_cols=108 Identities=29% Similarity=0.369 Sum_probs=75.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + -...+||+||+||||||+|+++|+.+
T Consensus 14 ~f~d-ivGQe~vv~~L~~~l~~~--r----------------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 14 TFAE-VVGQEHVLTALANALDLG--R----------------------------LHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455 899999999998887521 0 01336999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. |+++++.+ ..+ ...++++.+............|+||||+|+|+..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 63 NCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH 134 (647)
T ss_pred hhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH
Confidence 763 22222221 011 2345555554433322345679999999999887
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++.||+.||.
T Consensus 135 --------------a~NALLKtLEE 145 (647)
T PRK07994 135 --------------SFNALLKTLEE 145 (647)
T ss_pred --------------HHHHHHHHHHc
Confidence 89999999993
No 89
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.39 E-value=3.4e-12 Score=133.86 Aligned_cols=143 Identities=20% Similarity=0.301 Sum_probs=93.6
Q ss_pred ChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeeccccccccCccccchHHHHHHHHHhc--
Q 008723 308 EPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQA-- 382 (556)
Q Consensus 308 s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a-- 382 (556)
|+.|+.+.+.+..++....+|||+|++||||+++|++|+.... .+|+.++|..+.+. ..-..+|...
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~--------~~~~~lfg~~~~ 83 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN--------LLDSELFGHEAG 83 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH--------HHHHHHcccccc
Confidence 3333333333444455568999999999999999999998763 59999999975421 1111222211
Q ss_pred ---------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEEe
Q 008723 383 ---------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQMD 452 (556)
Q Consensus 383 ---------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivid 452 (556)
...+..+.+++||||||+.|... +|..|+.+|+.. ...+... . .-
T Consensus 84 ~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~--------~---~~ 138 (326)
T PRK11608 84 AFTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGS--------Q---PL 138 (326)
T ss_pred ccCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------c---ee
Confidence 22345667899999999999988 999999999832 2221111 1 11
Q ss_pred cCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 453 TKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 453 ~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
..++.+|++++ .++.+.+..+.|+..++|..
T Consensus 139 ~~~~RiI~~s~-~~l~~l~~~g~f~~dL~~~l 169 (326)
T PRK11608 139 QVNVRLVCATN-ADLPAMVAEGKFRADLLDRL 169 (326)
T ss_pred eccEEEEEeCc-hhHHHHHHcCCchHHHHHhc
Confidence 23566777655 57777777777766665543
No 90
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=2.6e-12 Score=148.67 Aligned_cols=108 Identities=33% Similarity=0.388 Sum_probs=74.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ||||+.+++.|..++... + ....+||+||+|||||++|++||+.+
T Consensus 13 ~f~e-iiGqe~v~~~L~~~i~~~--r----------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 13 TFAE-VIGQEHVTEPLSTALDSG--R----------------------------INHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887521 0 11348999999999999999999999
Q ss_pred CCC--------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 350 NVP--------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 350 ~~~--------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
++. |++++..+. .+ ...++++.+...+........|+||||+|+|+
T Consensus 62 ~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~-----~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt 133 (824)
T PRK07764 62 NCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH-----GG---VDDARELRERAFFAPAESRYKIFIIDEAHMVT 133 (824)
T ss_pred CcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc-----CC---HHHHHHHHHHHHhchhcCCceEEEEechhhcC
Confidence 752 112221110 11 23445554443333333467899999999998
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhc
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.. .++.||++||.
T Consensus 134 ~~--------------a~NaLLK~LEE 146 (824)
T PRK07764 134 PQ--------------GFNALLKIVEE 146 (824)
T ss_pred HH--------------HHHHHHHHHhC
Confidence 87 89999999993
No 91
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.39 E-value=3.4e-12 Score=138.81 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=83.1
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
...+.+.|.+.|+|++++++.+..++. ...+|||.||||||||++|+
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal---------------------------------ag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL---------------------------------SGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc---------------------------------cCCCEEEECCCChhHHHHHH
Confidence 456888999999999999998888774 34899999999999999999
Q ss_pred HHHHHhCC--CeeeeccccccccCccccchHHHH--HHHHH-hcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 344 TLARHVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLA-QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 344 aLA~~l~~--~fv~i~~s~l~~sgyvG~~~e~~l--~~lf~-~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
+||..+.. +|..+.+........+|...-... ...|. .....+. ...+||+|||+++.++
T Consensus 58 aLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~--~A~lLfLDEI~rasp~------------- 122 (498)
T PRK13531 58 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLP--EAEIVFLDEIWKAGPA------------- 122 (498)
T ss_pred HHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccc--cccEEeecccccCCHH-------------
Confidence 99998743 455444432122223342100000 01111 1111111 1239999999999888
Q ss_pred HHHHHHHHHHhcccccc
Q 008723 419 GVQQALLKMLEGTIVNV 435 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~i 435 (556)
+|+.||.+|+++.+.+
T Consensus 123 -~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 123 -ILNTLLTAINERRFRN 138 (498)
T ss_pred -HHHHHHHHHHhCeEec
Confidence 9999999998766654
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.39 E-value=3.4e-12 Score=130.18 Aligned_cols=115 Identities=28% Similarity=0.334 Sum_probs=76.2
Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 268 ~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.+.+++ ++||+.++..|..++..+ ...++||+||||||||+.|+++|+
T Consensus 32 Pkt~de-~~gQe~vV~~L~~a~~~~-------------------------------~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 32 PKTFDE-LAGQEHVVQVLKNALLRR-------------------------------ILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred CCcHHh-hcchHHHHHHHHHHHhhc-------------------------------CCceEEeeCCCCCcHhHHHHHHHH
Confidence 345566 799999999999998621 137999999999999999999999
Q ss_pred HhCCC------eeeeccccccccCccccchHHHHHHHHHhc--ccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 348 HVNVP------FVIADATTLTQAGYVGEDVESILYKLLAQA--EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 348 ~l~~~------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a--~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
+++.+ +.+.++++......+.+. .+...++.... .....+....|++|||.|.|+.+
T Consensus 80 ~L~~~~~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------- 144 (346)
T KOG0989|consen 80 ALNCEQLFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------- 144 (346)
T ss_pred HhcCccccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------
Confidence 99762 334455443322211111 01111111111 11111223479999999999988
Q ss_pred HHHHHHHHHh
Q 008723 420 VQQALLKMLE 429 (556)
Q Consensus 420 v~~~LL~~LE 429 (556)
.|++|++.||
T Consensus 145 aq~aLrr~mE 154 (346)
T KOG0989|consen 145 AQAALRRTME 154 (346)
T ss_pred HHHHHHHHHh
Confidence 9999999999
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.39 E-value=3.7e-12 Score=141.74 Aligned_cols=119 Identities=32% Similarity=0.467 Sum_probs=77.3
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
|++ ++||+.+++.|..++. ...+.++||+||||||||++|+++++.+
T Consensus 64 f~~-iiGqs~~i~~l~~al~-------------------------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 64 FDE-IIGQEEGIKALKAALC-------------------------------GPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHH-eeCcHHHHHHHHHHHh-------------------------------CCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 344 7999988888775542 1124789999999999999999998753
Q ss_pred ---------CCCeeeecccccc--ccC----ccccchHHHH--HHHH------HhcccchhccCCeEEEEecccccchhh
Q 008723 350 ---------NVPFVIADATTLT--QAG----YVGEDVESIL--YKLL------AQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~--~sg----yvG~~~e~~l--~~lf------~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
+.+|+.++|+... +.+ .++....... ...+ ......+..+++++||||||+.|...
T Consensus 112 ~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~- 190 (531)
T TIGR02902 112 KNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV- 190 (531)
T ss_pred hccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-
Confidence 3589999987421 110 1111000000 0000 01122344567899999999999988
Q ss_pred hcccccccCchHHHHHHHHHHHhcccccc
Q 008723 407 ESLNISRDVSGEGVQQALLKMLEGTIVNV 435 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LEg~~v~i 435 (556)
+|+.||++||...+.+
T Consensus 191 -------------~q~~LL~~Le~~~~~~ 206 (531)
T TIGR02902 191 -------------QMNKLLKVLEDRKVFL 206 (531)
T ss_pred -------------HHHHHHHHHHhCeeee
Confidence 9999999999554433
No 94
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-12 Score=139.65 Aligned_cols=142 Identities=23% Similarity=0.385 Sum_probs=101.0
Q ss_pred CCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeecccccccc----CccccchHHHHH
Q 008723 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQA----GYVGEDVESILY 376 (556)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s~l~~s----gyvG~~~e~~l~ 376 (556)
+|.+..++++.+.++.++....+||++|++||||+++|+.|+... ..||+.+||..+.++ .++|+. +....
T Consensus 81 IG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaft 159 (403)
T COG1221 81 IGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFT 159 (403)
T ss_pred hccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc-cceee
Confidence 466666666666666777778999999999999999999999544 559999999977643 122222 11111
Q ss_pred HHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCc
Q 008723 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKD 455 (556)
Q Consensus 377 ~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rn 455 (556)
.......+.++.+.+++||||||..|.+. .|..|+++|| |.+..+.+.+ ....+
T Consensus 160 Ga~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~-----------~~~~d 214 (403)
T COG1221 160 GAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQ-----------PRPVD 214 (403)
T ss_pred cccCCcCchheecCCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCC-----------CcCCC
Confidence 22222334577789999999999999998 9999999999 6555565432 23456
Q ss_pred eEEEecCCCcChHHHHHh
Q 008723 456 ILFICGGAFVDLEKTISE 473 (556)
Q Consensus 456 ii~I~t~n~~dl~~~i~~ 473 (556)
+.+|||++ .++.+.+..
T Consensus 215 VRli~AT~-~~l~~~~~~ 231 (403)
T COG1221 215 VRLICATT-EDLEEAVLA 231 (403)
T ss_pred ceeeeccc-cCHHHHHHh
Confidence 77888877 456666554
No 95
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.37 E-value=3.7e-12 Score=141.81 Aligned_cols=147 Identities=24% Similarity=0.391 Sum_probs=106.4
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
-+|.|+.|+.+.+.++.++....+|||+|++||||+++|++|+... +.+|+.++|..+.+. ..-..+|.
T Consensus 198 liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~--------~~~~~lfg 269 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET--------LLESELFG 269 (534)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH--------HHHHHHcC
Confidence 3589999999999999999999999999999999999999999886 469999999876421 11122222
Q ss_pred hc-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCc
Q 008723 381 QA-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDS 448 (556)
Q Consensus 381 ~a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~ 448 (556)
.. ...+..+.+++||||||+.|... +|..|+++|+. ....+.+. ..
T Consensus 270 ~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~~--------~~ 327 (534)
T TIGR01817 270 HEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGGN--------RT 327 (534)
T ss_pred CCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCCC--------ce
Confidence 11 12245567899999999999988 99999999983 22222111 11
Q ss_pred eEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 449 ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
...++.+|++++ .++++.+..+.|+..++|..
T Consensus 328 ---~~~~~riI~~s~-~~l~~~~~~~~f~~~L~~rl 359 (534)
T TIGR01817 328 ---LKVDVRLVAATN-RDLEEAVAKGEFRADLYYRI 359 (534)
T ss_pred ---EeecEEEEEeCC-CCHHHHHHcCCCCHHHHHHh
Confidence 123566777765 56777777777766665543
No 96
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=1.5e-12 Score=135.76 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=82.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccc-cCccccchH-----HHHHHHHHhcccchhccCCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-AGYVGEDVE-----SILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~-sgyvG~~~e-----~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
.+|||.||||||||++|+.||+.++.++++++++..+. .+++|...- ..+ ..|.......+...+.+||+|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~-~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQI-TEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcce-eEEecCcchhHHhCCeEEEechh
Confidence 78999999999999999999999999999999985443 245665310 000 01111111122246788999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d 466 (556)
|.+.++ +++.|..+|| +..+.+++.+ .++....++.+|+|.|..+
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~--------~~i~~hp~FrviAT~Np~g 189 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQN--------RVIRAHPAFRLFATANTIG 189 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCc--------eEecCCCCeEEEEeeCCCC
Confidence 998887 9999999999 6677776543 1222444688888888754
No 97
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=9.3e-12 Score=132.37 Aligned_cols=115 Identities=25% Similarity=0.310 Sum_probs=71.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+||+++++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 ~~~~-iiGq~~~~~~l~~~~~~~--~----------------------------~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 14 YFRD-IIGQKHIVTAISNGLSLG--R----------------------------IHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred chhh-ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4455 899999999998877521 0 12347999999999999999999998
Q ss_pred CCCeee--ecc------c--------cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 350 NVPFVI--ADA------T--------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 350 ~~~fv~--i~~------s--------~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
++.... -.| . ++....-........++++..............|+||||+|.+...
T Consensus 63 ~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-------- 134 (363)
T PRK14961 63 NCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-------- 134 (363)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH--------
Confidence 642110 000 0 1110000000112334555544332222235579999999999766
Q ss_pred cCchHHHHHHHHHHHh
Q 008723 414 DVSGEGVQQALLKMLE 429 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 ------a~naLLk~lE 144 (363)
T PRK14961 135 ------SFNALLKTLE 144 (363)
T ss_pred ------HHHHHHHHHh
Confidence 7899999998
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=7e-12 Score=134.60 Aligned_cols=158 Identities=21% Similarity=0.311 Sum_probs=97.9
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+||+++++.|..++...... . .. .....+..+||+||+|+|||++|+++|+.+.
T Consensus 4 f~~-IiGq~~~~~~L~~~i~~~~~~-----~-~~---------------~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 4 WDD-LVGQEAVVAELRAAARAARAD-----V-AA---------------AGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhh-ccChHHHHHHHHHHHHhcccc-----c-cc---------------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455 899999999999998632100 0 00 0000135699999999999999999999885
Q ss_pred CCeee-eccc--------------ccc--c-c-CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccc
Q 008723 351 VPFVI-ADAT--------------TLT--Q-A-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (556)
Q Consensus 351 ~~fv~-i~~s--------------~l~--~-s-gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~ 411 (556)
+..-. ..|. ++. . . ..++ ...++++++.+..........|+||||+|.+...
T Consensus 62 c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~------ 132 (394)
T PRK07940 62 CTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER------ 132 (394)
T ss_pred CCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH------
Confidence 53100 0010 110 0 0 0111 2346677665544333356679999999999877
Q ss_pred cccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhh
Q 008723 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 412 ~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~ 489 (556)
.++.||+.||. | ....+++++|++...+..++..|+. .+.|..|..++
T Consensus 133 --------aanaLLk~LEe-----p---------------~~~~~fIL~a~~~~~llpTIrSRc~--~i~f~~~~~~~ 180 (394)
T PRK07940 133 --------AANALLKAVEE-----P---------------PPRTVWLLCAPSPEDVLPTIRSRCR--HVALRTPSVEA 180 (394)
T ss_pred --------HHHHHHHHhhc-----C---------------CCCCeEEEEECChHHChHHHHhhCe--EEECCCCCHHH
Confidence 78999999983 0 1112344556666667777777664 66777665443
No 99
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.36 E-value=5.4e-12 Score=140.09 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=110.7
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH-----------hCCCeeeecccccccc----Cccc
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH-----------VNVPFVIADATTLTQA----GYVG 368 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~-----------l~~~fv~i~~s~l~~s----gyvG 368 (556)
-.|.|+.|+.+.+.+..++....+|||.|++||||+++|++|++. .+.||+.++|..+.+. .++|
T Consensus 221 iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG 300 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 300 (538)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcC
Confidence 468899999999999999999999999999999999999999988 3569999999976532 1122
Q ss_pred cchHHHHHHHH-HhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCC
Q 008723 369 EDVESILYKLL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRG 446 (556)
Q Consensus 369 ~~~e~~l~~lf-~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~ 446 (556)
+.. ....... ......++.+++++||||||+.|... +|..|+++|+.. ...+.+.
T Consensus 301 ~~~-gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e~~~~r~G~~-------- 357 (538)
T PRK15424 301 YEE-GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP--------------LQTRLLRVLEEKEVTRVGGH-------- 357 (538)
T ss_pred Ccc-ccccCccccccCCchhccCCCEEEEcChHhCCHH--------------HHHHHHhhhhcCeEEecCCC--------
Confidence 110 0000000 01123455678899999999999988 999999999843 3333221
Q ss_pred CceEEecCceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 447 DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 447 ~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
..+ .-++.+|++++ .++++.+.+++|+.+++|...
T Consensus 358 ~~~---~~dvRiIaat~-~~L~~~v~~g~Fr~dL~yrL~ 392 (538)
T PRK15424 358 QPV---PVDVRVISATH-CDLEEDVRQGRFRRDLFYRLS 392 (538)
T ss_pred cee---ccceEEEEecC-CCHHHHHhcccchHHHHHHhc
Confidence 111 23566777665 678888998899887776543
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.3e-12 Score=140.72 Aligned_cols=107 Identities=30% Similarity=0.384 Sum_probs=72.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + -...+||+||+|||||++|++||+.+
T Consensus 14 sf~d-IiGQe~v~~~L~~ai~~~--r----------------------------i~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 14 TFAE-VAGQETVKAILSRAAQEN--R----------------------------VAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CHHH-hcCCHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4455 799999999999888521 0 12579999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++.. ..+. ..++.+.+............||||||+|.|...
T Consensus 63 ~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~I---d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 63 NCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGI---DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE 134 (624)
T ss_pred cccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCH---HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH
Confidence 753 22232211 1111 223333322222222345679999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.||
T Consensus 135 --------------a~naLLk~LE 144 (624)
T PRK14959 135 --------------AFNALLKTLE 144 (624)
T ss_pred --------------HHHHHHHHhh
Confidence 8999999998
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=9.7e-12 Score=137.18 Aligned_cols=107 Identities=32% Similarity=0.413 Sum_probs=75.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... ....++||+||+||||||+|+++|+.+
T Consensus 19 ~f~d-liGq~~vv~~L~~ai~~~------------------------------ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 19 NFAE-LQGQEVLVKVLSYTILND------------------------------RLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877521 012579999999999999999999999
Q ss_pred CCCe----------------------------eeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 350 NVPF----------------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 350 ~~~f----------------------------v~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
++.. +++++.+ ......++++++.+......+...|+||||+|.
T Consensus 68 nc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas--------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~ 139 (507)
T PRK06645 68 NCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS--------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHM 139 (507)
T ss_pred cCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC--------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhh
Confidence 6521 1111111 011345666666654443345678999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
++.. .++.|++.||
T Consensus 140 Ls~~--------------a~naLLk~LE 153 (507)
T PRK06645 140 LSKG--------------AFNALLKTLE 153 (507)
T ss_pred cCHH--------------HHHHHHHHHh
Confidence 8776 8999999998
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=9.3e-12 Score=139.33 Aligned_cols=106 Identities=31% Similarity=0.384 Sum_probs=73.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCc-EEEeCCCCChhHHHHHHHHHH
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN-VLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~-vLL~GPpGTGKTtlAraLA~~ 348 (556)
.|++ |+||+.+++.|..++... ...| +||+||+|||||++|+++|+.
T Consensus 11 ~f~e-ivGq~~i~~~L~~~i~~~-------------------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 11 TFAE-VVGQEHVTEPLSSALDAG-------------------------------RINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455 899999999999888521 0134 799999999999999999999
Q ss_pred hCCC--------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 349 VNVP--------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 349 l~~~--------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
+++. ++++++++. .| ...++++.+............|+||||+|.|
T Consensus 59 l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~-----~g---vd~iRel~~~~~~~P~~~~~KVvIIDEah~L 130 (584)
T PRK14952 59 LNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH-----GG---VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV 130 (584)
T ss_pred hccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc-----cC---HHHHHHHHHHHHhhhhcCCceEEEEECCCcC
Confidence 8742 222222111 11 2334444444333222346679999999999
Q ss_pred chhhhcccccccCchHHHHHHHHHHHh
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.. .++.||+.||
T Consensus 131 t~~--------------A~NALLK~LE 143 (584)
T PRK14952 131 TTA--------------GFNALLKIVE 143 (584)
T ss_pred CHH--------------HHHHHHHHHh
Confidence 877 8999999999
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.3e-12 Score=141.28 Aligned_cols=107 Identities=30% Similarity=0.436 Sum_probs=75.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|||||++|++||+.+
T Consensus 14 ~f~d-viGQe~vv~~L~~~l~~~--r----------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 14 SFSE-MVGQEHVVQALTNALTQQ--R----------------------------LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 789999999999887521 0 11346999999999999999999998
Q ss_pred CCC-----------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 350 NVP-----------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 350 ~~~-----------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
++. ++++++.+- .| .+.++++.+............|++|||+|
T Consensus 63 nC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~-----~~---Vd~iReli~~~~~~p~~g~~KV~IIDEvh 134 (618)
T PRK14951 63 NCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASN-----RG---VDEVQQLLEQAVYKPVQGRFKVFMIDEVH 134 (618)
T ss_pred cCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccc-----cC---HHHHHHHHHHHHhCcccCCceEEEEEChh
Confidence 751 222222110 11 23456666554433333456799999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.|+.. .++.||+.||
T Consensus 135 ~Ls~~--------------a~NaLLKtLE 149 (618)
T PRK14951 135 MLTNT--------------AFNAMLKTLE 149 (618)
T ss_pred hCCHH--------------HHHHHHHhcc
Confidence 99887 8999999998
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1e-11 Score=136.32 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=77.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... ..+.++||+||+|+||||+|+.+|+.+
T Consensus 11 ~f~d-liGQe~vv~~L~~a~~~~------------------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 11 SFKD-LVGQDVLVRILRNAFTLN------------------------------KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 4444 899999999988877411 012579999999999999999999987
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++ .++++++++.. | .+.++++.+.+......+...|++|||+|.|+..
T Consensus 60 nC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~-----~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~ 131 (491)
T PRK14964 60 NCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNT-----S---VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS 131 (491)
T ss_pred cCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCC-----C---HHHHHHHHHHHHhccccCCceEEEEeChHhCCHH
Confidence 43 23444443221 2 2345566655443333456789999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++.||+.||.
T Consensus 132 --------------A~NaLLK~LEe 142 (491)
T PRK14964 132 --------------AFNALLKTLEE 142 (491)
T ss_pred --------------HHHHHHHHHhC
Confidence 89999999993
No 105
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=9.3e-12 Score=138.26 Aligned_cols=108 Identities=29% Similarity=0.394 Sum_probs=73.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|||||++|+.+|+.+
T Consensus 14 ~f~d-iiGq~~~v~~L~~~i~~~--r----------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 14 SFAE-VAGQQHALNSLVHALETQ--K----------------------------VHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455 899999999988877521 0 11348999999999999999999988
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++ .++++++.. ..|. ..++++++............|+||||+|++...
T Consensus 63 ~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~gv---d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~ 134 (546)
T PRK14957 63 NCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTGV---EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ 134 (546)
T ss_pred CCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccCH---HHHHHHHHHHHhhhhcCCcEEEEEechhhccHH
Confidence 64 122222211 1222 233444444332222346679999999999877
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++.||+.||.
T Consensus 135 --------------a~naLLK~LEe 145 (546)
T PRK14957 135 --------------SFNALLKTLEE 145 (546)
T ss_pred --------------HHHHHHHHHhc
Confidence 89999999993
No 106
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.34 E-value=2.9e-13 Score=123.05 Aligned_cols=111 Identities=27% Similarity=0.290 Sum_probs=65.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc-cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s-~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
||||.|+||+|||++|+++|+.++..|.+|.++ ++..+++.|...-..-...|.-.... .-..|+|+|||++..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GP---if~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGP---IFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-T---T-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecCh---hhhceeeecccccCCHH
Confidence 699999999999999999999999999999887 55554444433111000111111111 12359999999999998
Q ss_pred hhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEec-CceEEEecCCCc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDT-KDILFICGGAFV 465 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~-rnii~I~t~n~~ 465 (556)
+|++||++|+++++.+... .... +.+.+|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~~g~-----------~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTIDGQ-----------TYPLPDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEETTE-----------EEE--SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEeCCE-----------EEECCCcEEEEEecCcc
Confidence 9999999999888876433 2233 336677777754
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.34 E-value=8.1e-12 Score=145.69 Aligned_cols=172 Identities=21% Similarity=0.311 Sum_probs=115.6
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+. |+||++.++.+.+.+..+ ...+++|+||||||||++|+.||+.
T Consensus 184 ~~ld~-~iGr~~ei~~~i~~l~r~-------------------------------~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 184 GKIDP-VLGRDDEIRQMIDILLRR-------------------------------RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCCc-ccCCHHHHHHHHHHHhcC-------------------------------CcCceeEECCCCCCHHHHHHHHHHH
Confidence 34454 899999877777765421 2368999999999999999999987
Q ss_pred h----------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCch
Q 008723 349 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 349 l----------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~ 417 (556)
+ +..++.++...+. ...|.|+. +..++.++..... ...+.|||||||+.+.....+. .+.
T Consensus 232 i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~-~~~---- 302 (852)
T TIGR03345 232 IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQA-GQG---- 302 (852)
T ss_pred HhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCcc-ccc----
Confidence 6 2456777776655 23577776 6778888876532 1257899999999997653211 111
Q ss_pred HHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchh
Q 008723 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (556)
Q Consensus 418 ~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~ 497 (556)
.+-+.|+..|+ ...+.+|.|++..+..+.+
T Consensus 303 -d~~n~Lkp~l~-----------------------~G~l~~IgaTT~~e~~~~~-------------------------- 332 (852)
T TIGR03345 303 -DAANLLKPALA-----------------------RGELRTIAATTWAEYKKYF-------------------------- 332 (852)
T ss_pred -cHHHHhhHHhh-----------------------CCCeEEEEecCHHHHhhhh--------------------------
Confidence 14455666665 1245677777753221111
Q ss_pred HhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHH
Q 008723 498 AVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (556)
Q Consensus 498 ~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l 550 (556)
...|.|.+||. +|.+..++.++..+||......+
T Consensus 333 ------------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 333 ------------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred ------------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 14688888885 78888888888888875544443
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=9.7e-12 Score=140.13 Aligned_cols=114 Identities=28% Similarity=0.362 Sum_probs=75.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|||||++|++||+.+
T Consensus 14 tFdd-IIGQe~vv~~L~~ai~~~--r----------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 14 TFAD-LVGQEHVVKALQNALDEG--R----------------------------LHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CHHH-HcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 899999999999987521 0 12468999999999999999999998
Q ss_pred CCCeee--eccc--------------cccccC-ccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 350 NVPFVI--ADAT--------------TLTQAG-YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 350 ~~~fv~--i~~s--------------~l~~sg-yvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
++.-.. ..|. ++.+.. -.... ...+++++..+..........||||||+|.|...
T Consensus 63 nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~------- 134 (709)
T PRK08691 63 NCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS------- 134 (709)
T ss_pred cccCCCCCCCCcccHHHHHHhccCccceEEEeccccCC-HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-------
Confidence 653110 0000 110000 00111 2356666665443323346689999999998766
Q ss_pred ccCchHHHHHHHHHHHh
Q 008723 413 RDVSGEGVQQALLKMLE 429 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 -------A~NALLKtLE 144 (709)
T PRK08691 135 -------AFNAMLKTLE 144 (709)
T ss_pred -------HHHHHHHHHH
Confidence 7899999998
No 109
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.32 E-value=1.4e-11 Score=136.76 Aligned_cols=155 Identities=19% Similarity=0.329 Sum_probs=109.0
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc----CccccchHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILY 376 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s----gyvG~~~e~~l~ 376 (556)
-.|.|+.|+.+.+.++.++....+|||.|++||||+++|++|++.. +.||+.++|..+.+. .++|+.. ....
T Consensus 214 iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~-gaft 292 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEE-GAFT 292 (526)
T ss_pred eeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcc-cccc
Confidence 4688999999999999999999999999999999999999999876 569999999876432 1122210 0000
Q ss_pred HHH-HhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEEecC
Q 008723 377 KLL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQMDTK 454 (556)
Q Consensus 377 ~lf-~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivid~r 454 (556)
... ......++.+++++||||||+.|... +|..|+++|+.. ...+.+. ..+ .-
T Consensus 293 ga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~~--------~~~---~~ 347 (526)
T TIGR02329 293 GARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGGT--------EPV---PV 347 (526)
T ss_pred cccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCCC--------cee---ee
Confidence 000 01123345568899999999999988 999999999843 3333211 111 22
Q ss_pred ceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 455 DILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 455 nii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
++.+|++++ .++.+.+..+.|+..++|...
T Consensus 348 dvRiIaat~-~~l~~~v~~g~fr~dL~~rL~ 377 (526)
T TIGR02329 348 DVRVVAATH-CALTTAVQQGRFRRDLFYRLS 377 (526)
T ss_pred cceEEeccC-CCHHHHhhhcchhHHHHHhcC
Confidence 456677665 678888888888887776543
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.31 E-value=2e-11 Score=139.88 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=59.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchh-ccCCeEEEEecccccch
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITK 404 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~-~a~~~VLfLDEID~l~~ 404 (556)
.+++|+||||||||++|+++|+.++.+|+.+++.... .+.+++.+..+...+. .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 6899999999999999999999999999888875321 1122233332211111 12467999999999887
Q ss_pred hhhcccccccCchHHHHHHHHHHHh
Q 008723 405 KAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 405 ~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
. .++.|+..|+
T Consensus 124 ~--------------qQdaLL~~lE 134 (725)
T PRK13341 124 A--------------QQDALLPWVE 134 (725)
T ss_pred H--------------HHHHHHHHhc
Confidence 6 7889999887
No 111
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.31 E-value=9.5e-12 Score=122.71 Aligned_cols=113 Identities=28% Similarity=0.399 Sum_probs=85.2
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
+.|..+.+ |||.+..++.|....... .-+|++|.|||||||||.
T Consensus 21 YrP~~l~d-----IVGNe~tv~rl~via~~g-------------------------------nmP~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 21 YRPSVLQD-----IVGNEDTVERLSVIAKEG-------------------------------NMPNLIISGPPGTGKTTS 64 (333)
T ss_pred hCchHHHH-----hhCCHHHHHHHHHHHHcC-------------------------------CCCceEeeCCCCCchhhH
Confidence 45544433 999999999998876411 127899999999999999
Q ss_pred HHHHHHHhCC-----CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCc
Q 008723 342 AKTLARHVNV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (556)
Q Consensus 342 AraLA~~l~~-----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s 416 (556)
+.+||+++-. -++++++++- .|.+..+.--+.|.+....+......||+|||+|+++..
T Consensus 65 i~~LAr~LLG~~~ke~vLELNASde-----RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g----------- 128 (333)
T KOG0991|consen 65 ILCLARELLGDSYKEAVLELNASDE-----RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG----------- 128 (333)
T ss_pred HHHHHHHHhChhhhhHhhhccCccc-----cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------
Confidence 9999998832 3456666543 355545555567776666665567789999999999877
Q ss_pred hHHHHHHHHHHHh
Q 008723 417 GEGVQQALLKMLE 429 (556)
Q Consensus 417 ~~~v~~~LL~~LE 429 (556)
.|++|.+.||
T Consensus 129 ---AQQAlRRtME 138 (333)
T KOG0991|consen 129 ---AQQALRRTME 138 (333)
T ss_pred ---HHHHHHHHHH
Confidence 9999999999
No 112
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.30 E-value=1.4e-11 Score=129.49 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=81.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---- 350 (556)
|+||+++|+.|..++... ...|+||.|+||||||++||++|+.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~~-------------------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~ 58 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP-------------------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKA 58 (334)
T ss_pred hCCHHHHHHHHHHHHhcc-------------------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcch
Confidence 899999999887654210 126899999999999999999999983
Q ss_pred ---C--Ceeeeccc-cc----------------------cccCccccc-hHHHH-HHHHHhcccchhccCCeEEEEeccc
Q 008723 351 ---V--PFVIADAT-TL----------------------TQAGYVGED-VESIL-YKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 351 ---~--~fv~i~~s-~l----------------------~~sgyvG~~-~e~~l-~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
. .+..+.+. ++ .+...+|.- .+..+ ..-+....+.+..+++++||||||+
T Consensus 59 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEIn 138 (334)
T PRK13407 59 VEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVN 138 (334)
T ss_pred hcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChH
Confidence 2 11111111 00 001122321 01110 0111112233445677999999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
.+.++ +|+.|++.|+...+.+...|. . ......+++|+|.|.
T Consensus 139 rl~~~--------------~q~~Lle~mee~~v~v~r~G~-------~-~~~p~rfiviAt~NP 180 (334)
T PRK13407 139 LLEDH--------------IVDLLLDVAQSGENVVEREGL-------S-IRHPARFVLVGSGNP 180 (334)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCe-------E-EecCCCEEEEecCCc
Confidence 99887 999999999955433322221 1 112235667777664
No 113
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.30 E-value=8.2e-12 Score=141.85 Aligned_cols=149 Identities=20% Similarity=0.351 Sum_probs=107.4
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
-.|.|+.|..+.+.++.++....+|||+|++||||+++|++|++.. +.||+.++|..+.. +....++|.
T Consensus 327 l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~--------~~~~~elfg 398 (638)
T PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD--------EALAEEFLG 398 (638)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh--------HHHHHHhcC
Confidence 3467777777777888888888999999999999999999999876 46999999987642 111223332
Q ss_pred hc--------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCceEE
Q 008723 381 QA--------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQM 451 (556)
Q Consensus 381 ~a--------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~ivi 451 (556)
.. ...++.+.+++||||||+.|... +|..|+++|+. .++.+... ..+.+
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~--------~~~~~ 456 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSR--------RLIPV 456 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------ceEEe
Confidence 11 12355668899999999999988 99999999983 33332111 11122
Q ss_pred ecCceEEEecCCCcChHHHHHhcccccccccCChh
Q 008723 452 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 452 d~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
++.+|+|++ .++.+.+..+.|+..++|....
T Consensus 457 ---~~riI~~t~-~~l~~~~~~~~f~~dL~~~l~~ 487 (638)
T PRK11388 457 ---DVRVIATTT-ADLAMLVEQNRFSRQLYYALHA 487 (638)
T ss_pred ---eEEEEEecc-CCHHHHHhcCCChHHHhhhhce
Confidence 456677665 6788888888998888776543
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.6e-11 Score=136.53 Aligned_cols=108 Identities=30% Similarity=0.450 Sum_probs=75.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|+||||+|+++|+.+
T Consensus 14 ~f~d-ivGq~~v~~~L~~~i~~~--~----------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSE-LVGQEHVVRALTNALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455 899999999998887521 0 11347999999999999999999999
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++.. ......+++++..+..........|+||||+|+|+..
T Consensus 63 ~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~--------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~ 134 (527)
T PRK14969 63 NCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS--------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS 134 (527)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc--------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH
Confidence 652 11122110 1113345666665543333346689999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHhc
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++.||+.||.
T Consensus 135 --------------a~naLLK~LEe 145 (527)
T PRK14969 135 --------------AFNAMLKTLEE 145 (527)
T ss_pred --------------HHHHHHHHHhC
Confidence 89999999983
No 115
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.30 E-value=1e-11 Score=137.63 Aligned_cols=150 Identities=23% Similarity=0.337 Sum_probs=111.2
Q ss_pred cCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHH
Q 008723 303 KGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLL 379 (556)
Q Consensus 303 ~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf 379 (556)
.-+|.|..|+.+.+.++.++....+|||+|++||||+++|++|+... +.+|+.++|..+.+. ..-.++|
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~--------~~e~~lf 259 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES--------LAESELF 259 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH--------HHHHHhc
Confidence 35699999999999999999999999999999999999999999886 469999999876421 1111222
Q ss_pred Hh-----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCC
Q 008723 380 AQ-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGD 447 (556)
Q Consensus 380 ~~-----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~ 447 (556)
.. ....+..+.+++||||||+.|... +|..|+++|+. ....+.+. .
T Consensus 260 G~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~ 317 (509)
T PRK05022 260 GHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSD--------R 317 (509)
T ss_pred CccccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCC--------c
Confidence 21 112355678899999999999988 99999999983 33222211 1
Q ss_pred ceEEecCceEEEecCCCcChHHHHHhcccccccccCChh
Q 008723 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 448 ~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
. ...++.+|++++ .++++.+..+.|+..++|....
T Consensus 318 ~---~~~~~RiI~~t~-~~l~~~~~~~~f~~dL~~rl~~ 352 (509)
T PRK05022 318 S---LRVDVRVIAATN-RDLREEVRAGRFRADLYHRLSV 352 (509)
T ss_pred c---eecceEEEEecC-CCHHHHHHcCCccHHHHhcccc
Confidence 1 123566777665 5788888888898888775543
No 116
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=2.1e-11 Score=128.78 Aligned_cols=115 Identities=23% Similarity=0.419 Sum_probs=73.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---- 350 (556)
|+||+++|.+|..++.++ ...+|||.|++|||||++||++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~p-------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~ 67 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP-------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEV 67 (350)
T ss_pred HhChHHHHHHHHHhccCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCc
Confidence 899999999998876521 126899999999999999999998873
Q ss_pred ---CCeeeeccc-------cccc--------------cCc----cccchHHH-----HHHHHHhc-----ccchhccCCe
Q 008723 351 ---VPFVIADAT-------TLTQ--------------AGY----VGEDVESI-----LYKLLAQA-----EFNVEAAQQG 392 (556)
Q Consensus 351 ---~~fv~i~~s-------~l~~--------------sgy----vG~~~e~~-----l~~lf~~a-----~~~l~~a~~~ 392 (556)
.+|. .+.. ++.. ..+ .|.++... +.+.+... .+.+..++++
T Consensus 68 ~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G 146 (350)
T CHL00081 68 VKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG 146 (350)
T ss_pred cCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC
Confidence 2332 0000 0000 000 01111110 11222222 3345567889
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHhcccccc
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNV 435 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~i 435 (556)
+||||||+.+.+. +|+.|++.|+...+.+
T Consensus 147 iL~lDEInrL~~~--------------~Q~~LLeam~e~~~~i 175 (350)
T CHL00081 147 ILYVDEVNLLDDH--------------LVDILLDSAASGWNTV 175 (350)
T ss_pred EEEecChHhCCHH--------------HHHHHHHHHHhCCeEE
Confidence 9999999999988 9999999998544433
No 117
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=7.4e-13 Score=120.91 Aligned_cols=122 Identities=25% Similarity=0.395 Sum_probs=72.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccccc-CccccchHHHHHHHHHhcccch--hccCCeEEEEecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNV--EAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s-gyvG~~~e~~l~~lf~~a~~~l--~~a~~~VLfLDEID~l~ 403 (556)
+|+|+||||||||++|+.+|+.++.+++.+.++...+. .+.|.-... ...+......+ ...+++|+|||||+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 58999999999999999999999999999988854322 111111000 00000011111 12367899999999988
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d 466 (556)
++ +++.|+.+||+..+.+++.+......... ....++.+|+|.|..+
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPRD 125 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSST
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCCC
Confidence 76 99999999997666655443222111111 1122588999988643
No 118
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=1.6e-11 Score=135.47 Aligned_cols=186 Identities=20% Similarity=0.292 Sum_probs=109.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.+..++. ...+++|.||||||||++|+.++..+
T Consensus 190 d~~d-v~Gq~~~~~al~~aa~---------------------------------~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKD-IKGQQHAKRALEIAAA---------------------------------GGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHH-hcCcHHHHhhhhhhcc---------------------------------CCCEEEEEecCCCCHHHHHHHHhccc
Confidence 3444 8999999887766653 23789999999999999999999765
Q ss_pred CC----Ceeeeccc-cccc----------cCcc----ccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccc
Q 008723 350 NV----PFVIADAT-TLTQ----------AGYV----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (556)
Q Consensus 350 ~~----~fv~i~~s-~l~~----------sgyv----G~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~ 410 (556)
.. .+++.... ++.. .-|. ..+....+........+.+..++++||||||++.+...
T Consensus 236 p~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~----- 310 (499)
T TIGR00368 236 PPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS----- 310 (499)
T ss_pred CCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH-----
Confidence 21 11111111 0000 0000 00000000000001123455678899999999998877
Q ss_pred ccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccC-Chhhhh
Q 008723 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG-APVRAN 489 (556)
Q Consensus 411 ~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~-~p~~~~ 489 (556)
+++.|++.||...+.+...+ .......++.+|+++|.- ..++. .+....
T Consensus 311 ---------~~~~L~~~LE~~~v~i~r~g--------~~~~~pa~frlIaa~Npc-------------pcg~~~~~~~~c 360 (499)
T TIGR00368 311 ---------VLDALREPIEDGSISISRAS--------AKIFYPARFQLVAAMNPC-------------PCGHYGGKNTHC 360 (499)
T ss_pred ---------HHHHHHHHHHcCcEEEEecC--------cceeccCCeEEEEecCCc-------------ccCcCCCCcccc
Confidence 99999999996555443322 112234577888888742 23332 211111
Q ss_pred hccccchhHhHHHHHhhcCchHHHHc--CCCHHHhccCCceeeCCCCCHHHHH
Q 008723 490 MRAGVTDAAVTSSLLESVESSDLIAY--GLIPEFVGRFPILVSLTALTEDQLV 540 (556)
Q Consensus 490 ~~~~~~~~~~~~~l~~~l~~~dl~~~--~l~Pell~R~~~iI~f~~ls~eeL~ 540 (556)
.| .+.++.+| .+...|++|||..+.+++++.++|.
T Consensus 361 ~c----------------~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 361 RC----------------SPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL 397 (499)
T ss_pred cC----------------CHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHh
Confidence 11 11111111 3789999999999999998877763
No 119
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=5.1e-11 Score=133.38 Aligned_cols=107 Identities=30% Similarity=0.391 Sum_probs=75.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... .....+||+||+|||||++|+.+|+.+
T Consensus 14 ~f~~-viGq~~v~~~L~~~i~~~------------------------------~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 14 TFED-VVGQEHITKTLKNAIKQG------------------------------KISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred cHHh-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3454 899999999998887521 012458999999999999999999998
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++++. .. ...++.+..........+...|+||||+|.|+..
T Consensus 63 ~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~-------~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~ 134 (559)
T PRK05563 63 NCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASN-------NG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG 134 (559)
T ss_pred cCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecccc-------CC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH
Confidence 642 233333210 11 2345566555444333456789999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 --------------a~naLLKtLE 144 (559)
T PRK05563 135 --------------AFNALLKTLE 144 (559)
T ss_pred --------------HHHHHHHHhc
Confidence 8999999998
No 120
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.27 E-value=4e-11 Score=133.27 Aligned_cols=149 Identities=22% Similarity=0.380 Sum_probs=103.8
Q ss_pred cCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHH
Q 008723 303 KGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLL 379 (556)
Q Consensus 303 ~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf 379 (556)
.-.|.|+.|+.+.+.++.++....+|||+|++||||+++|++++... ..||+.++|..+.+. ..-.++|
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~--------~~e~elF 276 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD--------VVESELF 276 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH--------HHHHHhc
Confidence 34566666666776777777778999999999999999999999876 359999999876421 1111233
Q ss_pred Hhc-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCC
Q 008723 380 AQA-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGD 447 (556)
Q Consensus 380 ~~a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~ 447 (556)
... ...++.+.+++||||||+.|... +|..|+++|+. ....+.+. .
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~ 334 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGED--------H 334 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCCC--------c
Confidence 211 12344567899999999999988 99999999983 23322111 1
Q ss_pred ceEEecCceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 448 ~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
.+ ..++.+|++++ .++.+++..+.|+..++|...
T Consensus 335 ~~---~~~vRiI~st~-~~l~~l~~~g~f~~dL~~rL~ 368 (520)
T PRK10820 335 EV---HVDVRVICATQ-KNLVELVQKGEFREDLYYRLN 368 (520)
T ss_pred ce---eeeeEEEEecC-CCHHHHHHcCCccHHHHhhcC
Confidence 11 23556677654 678888888888877777543
No 121
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=6.9e-11 Score=130.66 Aligned_cols=107 Identities=30% Similarity=0.348 Sum_probs=71.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... ..+..+||+|||||||||+|+++|+.+
T Consensus 12 ~~~d-vvGq~~v~~~L~~~i~~~------------------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 12 TFDE-VVGQEHVKEVLLAALRQG------------------------------RLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred CHHH-hcChHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 899999999998887521 011335999999999999999999988
Q ss_pred CCC-----------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhh
Q 008723 350 NVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 350 ~~~-----------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
.+. ++.+++.+ ..+ ...++.+..............||||||+|.+...
T Consensus 61 ~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~- 131 (504)
T PRK14963 61 NCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS- 131 (504)
T ss_pred hccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH-
Confidence 531 23333321 111 2234444333322212246679999999988765
Q ss_pred hcccccccCchHHHHHHHHHHHh
Q 008723 407 ESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.|+
T Consensus 132 -------------a~naLLk~LE 141 (504)
T PRK14963 132 -------------AFNALLKTLE 141 (504)
T ss_pred -------------HHHHHHHHHH
Confidence 7899999998
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.26 E-value=2.9e-11 Score=139.10 Aligned_cols=168 Identities=23% Similarity=0.349 Sum_probs=107.8
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
++. ++|.+..++.+.+.+... .+.++||+||||||||++|+.+|..+
T Consensus 185 ~~~-liGR~~ei~~~i~iL~r~-------------------------------~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDP-LIGREKELERAIQVLCRR-------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCc-CcCCCHHHHHHHHHHhcc-------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 899999888888877521 23789999999999999999999765
Q ss_pred ---------CCCeeeeccccccc-cCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 350 ---------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~~-sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
+..++.++...+.. ..|.|+. +..++.++.... ...++||||||||.+........ ....
T Consensus 233 ~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~----~~~~~ILfIDEIh~L~g~g~~~~-----g~~d 302 (758)
T PRK11034 233 QGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAASG-----GQVD 302 (758)
T ss_pred hcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHH----hcCCCEEEeccHHHHhccCCCCC-----cHHH
Confidence 34555555554442 3466766 666777776543 23578999999999876532111 1123
Q ss_pred HHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHh
Q 008723 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (556)
Q Consensus 420 v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~ 499 (556)
+.+.|..+++ ..++.+|++++..+..+.+.
T Consensus 303 ~~nlLkp~L~-----------------------~g~i~vIgATt~~E~~~~~~--------------------------- 332 (758)
T PRK11034 303 AANLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIFE--------------------------- 332 (758)
T ss_pred HHHHHHHHHh-----------------------CCCeEEEecCChHHHHHHhh---------------------------
Confidence 5555666654 12466788877543221111
Q ss_pred HHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 500 ~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
..|.|.+||. .|.+..++.++..+||.....
T Consensus 333 -----------------~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 333 -----------------KDRALARRFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred -----------------ccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 3566777774 677777777777777764443
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=3.8e-11 Score=134.89 Aligned_cols=107 Identities=27% Similarity=0.375 Sum_probs=74.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+++++.|..++... + .+..+||+||+|+|||++|+++|+.+
T Consensus 14 ~f~~-iiGq~~v~~~L~~~i~~~--~----------------------------~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 14 TFSD-LTGQEHVSRTLQNAIDTG--R----------------------------VAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CHHH-ccCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455 899999999998887521 0 12457999999999999999999998
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++++++.+ ..+ .+.++++..............|++|||+|.|+..
T Consensus 63 ~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----~~~---v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~ 134 (576)
T PRK14965 63 NCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----NTG---VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN 134 (576)
T ss_pred cCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----ccC---HHHHHHHHHHHHhccccCCceEEEEEChhhCCHH
Confidence 642 22222211 111 2345555554433323346689999999999876
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 --------------a~naLLk~LE 144 (576)
T PRK14965 135 --------------AFNALLKTLE 144 (576)
T ss_pred --------------HHHHHHHHHH
Confidence 8999999999
No 124
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=3.8e-11 Score=140.43 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=84.2
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+. |+|+++.++.+.+.+..+ .+.+++|+||||||||++|++||..
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhcC-------------------------------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 34555 899999888877776421 2368999999999999999999998
Q ss_pred h----------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCch
Q 008723 349 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 349 l----------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~ 417 (556)
+ +.+++.++...+. ...|.|+. +..++.+|..... ...+.||||||||.+.....+ ..+
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~-~~~----- 292 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA-DGA----- 292 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCC-ccc-----
Confidence 7 6688888877654 23477776 6777787765321 125789999999999755321 111
Q ss_pred HHHHHHHHHHHh
Q 008723 418 EGVQQALLKMLE 429 (556)
Q Consensus 418 ~~v~~~LL~~LE 429 (556)
..+.+.|...|+
T Consensus 293 ~d~~~~lkp~l~ 304 (857)
T PRK10865 293 MDAGNMLKPALA 304 (857)
T ss_pred hhHHHHhcchhh
Confidence 125666666654
No 125
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.25 E-value=4.2e-11 Score=139.68 Aligned_cols=116 Identities=27% Similarity=0.372 Sum_probs=85.5
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
++. |+|.++.++.+.+.+... .+.+++|+||||||||++|+.||..+
T Consensus 178 ~~~-~igr~~ei~~~~~~L~r~-------------------------------~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDP-VIGREKEIERVIQILGRR-------------------------------TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCC-CCCcHHHHHHHHHHHccc-------------------------------ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 899999999998887521 23689999999999999999999876
Q ss_pred ---------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 350 ---------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
+.+++.+++..+. ...|.|+. +..++.+++.+.. ..+.||||||||.+...... . + .. .
T Consensus 226 ~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~-~-g-~~---~ 294 (821)
T CHL00095 226 NRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAA-E-G-AI---D 294 (821)
T ss_pred hCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCC-C-C-cc---c
Confidence 3678899988765 34688876 6778888876542 25789999999998764321 1 1 11 2
Q ss_pred HHHHHHHHHh
Q 008723 420 VQQALLKMLE 429 (556)
Q Consensus 420 v~~~LL~~LE 429 (556)
+.+.|...|.
T Consensus 295 ~a~lLkp~l~ 304 (821)
T CHL00095 295 AANILKPALA 304 (821)
T ss_pred HHHHhHHHHh
Confidence 5666666655
No 126
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4.4e-11 Score=128.66 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=72.3
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+||+.+++.|..++... + .+..+||+||+|+|||++|+++|+.+.
T Consensus 15 ~~e-iiGq~~~~~~L~~~~~~~--~----------------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 15 FAD-ITAQEHITRTIQNSLRMG--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred Hhh-ccChHHHHHHHHHHHHhC--C----------------------------cceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 899999999988877521 0 124599999999999999999999996
Q ss_pred CCe-e---------eeccccc------c---ccC---ccccc--hHHHHHHHHHhcccchhccCCeEEEEecccccchhh
Q 008723 351 VPF-V---------IADATTL------T---QAG---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 351 ~~f-v---------~i~~s~l------~---~sg---yvG~~--~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
+.- . .-.|... . ... +.+.+ ..+.++.+.+........+...|+||||+|.+...
T Consensus 64 c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~- 142 (397)
T PRK14955 64 CQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA- 142 (397)
T ss_pred CCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-
Confidence 621 0 0011100 0 000 11111 12344455444432222345679999999999876
Q ss_pred hcccccccCchHHHHHHHHHHHh
Q 008723 407 ESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.||
T Consensus 143 -------------~~~~LLk~LE 152 (397)
T PRK14955 143 -------------AFNAFLKTLE 152 (397)
T ss_pred -------------HHHHHHHHHh
Confidence 7889999998
No 127
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.24 E-value=2.4e-11 Score=139.27 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=107.8
Q ss_pred cCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc----CccccchHHHH
Q 008723 303 KGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESIL 375 (556)
Q Consensus 303 ~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s----gyvG~~~e~~l 375 (556)
..+|.|+.|..+.+.++.++....+|||+|++|||||++|++|+... +.+|+.++|..+.+. .++|..... .
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~ 455 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA-F 455 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccc-c
Confidence 45689999999999999999999999999999999999999999876 569999999865421 122221000 0
Q ss_pred HHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEEecC
Q 008723 376 YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQMDTK 454 (556)
Q Consensus 376 ~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivid~r 454 (556)
..........++.+.+++||||||+.+..+ +|..|+.+|+.. ...+.+. . ....
T Consensus 456 ~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~--------~---~~~~ 510 (686)
T PRK15429 456 TGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN--------K---IIQT 510 (686)
T ss_pred cccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC--------C---cccc
Confidence 000000012234557899999999999888 999999999832 2222111 1 1123
Q ss_pred ceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 455 DILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 455 nii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
++.+|++++ .++.+.+..+.|+..++|..
T Consensus 511 ~~RiI~~t~-~~l~~~~~~~~f~~~L~~~l 539 (686)
T PRK15429 511 DVRLIAATN-RDLKKMVADREFRSDLYYRL 539 (686)
T ss_pred eEEEEEeCC-CCHHHHHHcCcccHHHHhcc
Confidence 566777665 67888888888888777653
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=9.5e-11 Score=131.78 Aligned_cols=121 Identities=27% Similarity=0.318 Sum_probs=81.1
Q ss_pred CCCCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCC
Q 008723 257 LGEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGS 336 (556)
Q Consensus 257 ~~~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGT 336 (556)
+....+.|+.+ ++ |+||+.+++.|..++... .....+||+||+|+
T Consensus 13 ~la~KyRP~~f----~d-liGq~~~v~~L~~~~~~g------------------------------ri~ha~L~~Gp~Gv 57 (598)
T PRK09111 13 VLARKYRPQTF----DD-LIGQEAMVRTLTNAFETG------------------------------RIAQAFMLTGVRGV 57 (598)
T ss_pred hHHhhhCCCCH----HH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCC
Confidence 34445666544 44 899999999998887521 01256999999999
Q ss_pred hhHHHHHHHHHHhCCCeeeec-------cc--------------cccc---cCccccchHHHHHHHHHhcccchhccCCe
Q 008723 337 GKTLLAKTLARHVNVPFVIAD-------AT--------------TLTQ---AGYVGEDVESILYKLLAQAEFNVEAAQQG 392 (556)
Q Consensus 337 GKTtlAraLA~~l~~~fv~i~-------~s--------------~l~~---sgyvG~~~e~~l~~lf~~a~~~l~~a~~~ 392 (556)
|||++|++||+.+++.....+ |. ++.. ....| -..+++++.........+...
T Consensus 58 GKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~K 134 (598)
T PRK09111 58 GKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYK 134 (598)
T ss_pred CHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcE
Confidence 999999999999975432111 10 1110 01112 234566665554333345678
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
|+||||+|.|... .++.||+.||
T Consensus 135 VvIIDEad~Ls~~--------------a~naLLKtLE 157 (598)
T PRK09111 135 VYIIDEVHMLSTA--------------AFNALLKTLE 157 (598)
T ss_pred EEEEEChHhCCHH--------------HHHHHHHHHH
Confidence 9999999999876 8999999998
No 129
>PHA02244 ATPase-like protein
Probab=99.24 E-value=2.3e-11 Score=128.53 Aligned_cols=149 Identities=17% Similarity=0.282 Sum_probs=98.2
Q ss_pred CCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc--ccCccccchHHHHHHHHHhcc
Q 008723 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT--QAGYVGEDVESILYKLLAQAE 383 (556)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~--~sgyvG~~~e~~l~~lf~~a~ 383 (556)
+.++.++.....+........+|||.||||||||++|++||..++.+|+.++...-. -.+++... . .+...+
T Consensus 100 g~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-----~~~dgp 173 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-----KFHETP 173 (383)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-----cccchH
Confidence 566667666777777778889999999999999999999999999999998853100 00111111 0 111111
Q ss_pred cchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCC
Q 008723 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGA 463 (556)
Q Consensus 384 ~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n 463 (556)
...+...+++||||||+.+.++ ++..|+.+++...+.+... .+....++.+|+|+|
T Consensus 174 Ll~A~~~GgvLiLDEId~a~p~--------------vq~~L~~lLd~r~l~l~g~----------~i~~h~~FRlIATsN 229 (383)
T PHA02244 174 FYEAFKKGGLFFIDEIDASIPE--------------ALIIINSAIANKFFDFADE----------RVTAHEDFRVISAGN 229 (383)
T ss_pred HHHHhhcCCEEEEeCcCcCCHH--------------HHHHHHHHhccCeEEecCc----------EEecCCCEEEEEeeC
Confidence 1111236789999999999887 8999999998655443221 233445677788777
Q ss_pred C------------cChHHHHHhcccccccccCChh
Q 008723 464 F------------VDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 464 ~------------~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
. ..+.+++..|... +.|..|.
T Consensus 230 ~~~~G~~~~y~G~k~L~~AllDRFv~--I~~dyp~ 262 (383)
T PHA02244 230 TLGKGADHIYVARNKIDGATLDRFAP--IEFDYDE 262 (383)
T ss_pred CCccCcccccCCCcccCHHHHhhcEE--eeCCCCc
Confidence 6 3456666655543 4444444
No 130
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.23 E-value=5.4e-11 Score=125.33 Aligned_cols=110 Identities=25% Similarity=0.402 Sum_probs=71.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----- 349 (556)
|+||+++|..|..++... ...+++|.|++|+||||++++|+..+
T Consensus 6 ivgq~~~~~al~~~~~~~-------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~ 54 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDP-------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKA 54 (337)
T ss_pred cccHHHHHHHHHHHhcCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhccccc
Confidence 899999999887666411 13789999999999999999999887
Q ss_pred --CCCee-------------ee--cc-------------cc----ccccCccccchHHHHHHHHH-----hcccchhccC
Q 008723 350 --NVPFV-------------IA--DA-------------TT----LTQAGYVGEDVESILYKLLA-----QAEFNVEAAQ 390 (556)
Q Consensus 350 --~~~fv-------------~i--~~-------------s~----l~~sgyvG~~~e~~l~~lf~-----~a~~~l~~a~ 390 (556)
+.+|- ++ .. .+ ..+..++|.. .+...+. ...+.+..++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~---d~~~~l~~g~~~~~~GlL~~A~ 131 (337)
T TIGR02030 55 VAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL---DIERALTEGVKAFEPGLLARAN 131 (337)
T ss_pred ccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch---hHhhHhhcCCEEeecCcceecc
Confidence 22221 00 00 00 0001223322 1112111 1223445567
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
+++||||||+.+.+. +|+.|+++|+...
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~ 159 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGW 159 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCC
Confidence 899999999999887 9999999998433
No 131
>PRK04195 replication factor C large subunit; Provisional
Probab=99.23 E-value=1.9e-10 Score=126.82 Aligned_cols=118 Identities=30% Similarity=0.461 Sum_probs=80.3
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
+.|+.+ ++ |+|++++++.|...+.... .+ .+..++||+||||||||++
T Consensus 8 yrP~~l----~d-lvg~~~~~~~l~~~l~~~~---------~g------------------~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 8 YRPKTL----SD-VVGNEKAKEQLREWIESWL---------KG------------------KPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred cCCCCH----HH-hcCCHHHHHHHHHHHHHHh---------cC------------------CCCCeEEEECCCCCCHHHH
Confidence 455544 44 8999999999998875321 00 1247899999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccc--hhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~--l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
|++||+.++.+++++++++... ...+..+...+... +......+|+|||+|.+.... ...
T Consensus 56 a~ala~el~~~~ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~ 117 (482)
T PRK04195 56 AHALANDYGWEVIELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRG 117 (482)
T ss_pred HHHHHHHcCCCEEEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chh
Confidence 9999999999999999986542 12233332222111 111256799999999886521 012
Q ss_pred HHHHHHHHHh
Q 008723 420 VQQALLKMLE 429 (556)
Q Consensus 420 v~~~LL~~LE 429 (556)
.++.|+++|+
T Consensus 118 ~~~aL~~~l~ 127 (482)
T PRK04195 118 GARAILELIK 127 (482)
T ss_pred HHHHHHHHHH
Confidence 5778888877
No 132
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1e-10 Score=132.93 Aligned_cols=116 Identities=23% Similarity=0.338 Sum_probs=75.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+||+.+++.|..++... + ....+||+||+|+|||++|+++|+.+
T Consensus 16 ~f~d-IiGQe~~v~~L~~aI~~~--r----------------------------l~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 16 TFDD-IVGQDHIVQTLKNIIKSN--K----------------------------ISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 899999999999988521 0 12457999999999999999999998
Q ss_pred CCCeee---ecccccc---c--cCcc---c--cchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCc
Q 008723 350 NVPFVI---ADATTLT---Q--AGYV---G--EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (556)
Q Consensus 350 ~~~fv~---i~~s~l~---~--sgyv---G--~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s 416 (556)
.+.-.. ..|..+. . ..++ + ......++.+.+............|++|||+|.|...
T Consensus 65 nC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------- 133 (725)
T PRK07133 65 NCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------- 133 (725)
T ss_pred cccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------
Confidence 653110 0111000 0 0000 0 0112345666655443333356789999999999876
Q ss_pred hHHHHHHHHHHHhc
Q 008723 417 GEGVQQALLKMLEG 430 (556)
Q Consensus 417 ~~~v~~~LL~~LEg 430 (556)
.+++||+.||.
T Consensus 134 ---A~NALLKtLEE 144 (725)
T PRK07133 134 ---AFNALLKTLEE 144 (725)
T ss_pred ---HHHHHHHHhhc
Confidence 89999999993
No 133
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.22 E-value=6.2e-11 Score=134.59 Aligned_cols=136 Identities=26% Similarity=0.303 Sum_probs=86.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----- 349 (556)
|+||+.+|..|..++... ...+|||.|++|||||++|++|++.+
T Consensus 6 ivGq~~~~~al~~~av~~-------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~ 54 (633)
T TIGR02442 6 IVGQEDLKLALLLNAVDP-------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDV 54 (633)
T ss_pred hcChHHHHHHHHHHhhCC-------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCcee
Confidence 899999998887665411 12579999999999999999999998
Q ss_pred ------------------------------CCCeeeeccccccccCccccc-hHHHHHH-HHHhcccchhccCCeEEEEe
Q 008723 350 ------------------------------NVPFVIADATTLTQAGYVGED-VESILYK-LLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 350 ------------------------------~~~fv~i~~s~l~~sgyvG~~-~e~~l~~-lf~~a~~~l~~a~~~VLfLD 397 (556)
..+|+.+.+.... ..++|.. .+..+.. .+....+.+..++++|||||
T Consensus 55 ~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lD 133 (633)
T TIGR02442 55 VAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYID 133 (633)
T ss_pred ccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeC
Confidence 2466665554322 2234432 1111110 01112334556788999999
Q ss_pred cccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 398 EID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
||+.+... +|+.|++.|+...+.+...+ .. .....++++|+|.|.
T Consensus 134 Ei~~l~~~--------------~q~~Ll~~le~g~~~v~r~g-------~~-~~~~~~~~lIat~np 178 (633)
T TIGR02442 134 EVNLLDDH--------------LVDVLLDAAAMGVNRVEREG-------LS-VSHPARFVLIGTMNP 178 (633)
T ss_pred hhhhCCHH--------------HHHHHHHHHhcCCEEEEECC-------ce-eeecCCeEEEEecCC
Confidence 99999988 99999999994333221111 11 122355777777664
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.4e-10 Score=131.09 Aligned_cols=114 Identities=27% Similarity=0.354 Sum_probs=76.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + -..++||+||+|+|||++|+++|+.+
T Consensus 14 ~f~~-liGq~~i~~~L~~~l~~~--r----------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 14 RFDE-LVGQEAIATTLKNALISN--R----------------------------IAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred cHhh-ccChHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCChHHHHHHHHHHh
Confidence 3444 899999999998887521 0 12579999999999999999999999
Q ss_pred CCCeee----eccc--------------cccccC-ccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccc
Q 008723 350 NVPFVI----ADAT--------------TLTQAG-YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (556)
Q Consensus 350 ~~~fv~----i~~s--------------~l~~sg-yvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~ 410 (556)
++.... ..|. ++.... ..... .+.+++++..+..........||||||+|.|...
T Consensus 63 ~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~----- 136 (620)
T PRK14948 63 NCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA----- 136 (620)
T ss_pred cCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-----
Confidence 763110 0111 110000 01111 3456677665543322345679999999999876
Q ss_pred ccccCchHHHHHHHHHHHh
Q 008723 411 ISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 411 ~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 137 ---------a~naLLK~LE 146 (620)
T PRK14948 137 ---------AFNALLKTLE 146 (620)
T ss_pred ---------HHHHHHHHHh
Confidence 8999999999
No 135
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.3e-10 Score=129.68 Aligned_cols=107 Identities=30% Similarity=0.427 Sum_probs=73.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... .....+||+||+|+|||++|+++|+.+
T Consensus 14 ~F~d-IIGQe~iv~~L~~aI~~~------------------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 14 NFKQ-IIGQELIKKILVNAILNN------------------------------KLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877421 012469999999999999999999998
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.+ .++.+++.. ..| -..++++..............|++|||+|.|+..
T Consensus 63 ~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~ig---Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~ 134 (605)
T PRK05896 63 NCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNG---VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS 134 (605)
T ss_pred cCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-----ccC---HHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH
Confidence 53 122222211 112 2234555544333222345679999999999766
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 --------------A~NaLLKtLE 144 (605)
T PRK05896 135 --------------AWNALLKTLE 144 (605)
T ss_pred --------------HHHHHHHHHH
Confidence 7899999999
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.21 E-value=5.4e-11 Score=130.63 Aligned_cols=141 Identities=28% Similarity=0.375 Sum_probs=95.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++.+. |+ ...+||.||-||||||+||.+|+.+
T Consensus 14 ~F~e-vvGQe~v~~~L~nal~~~--ri----------------------------~hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 14 TFDD-VVGQEHVVKTLSNALENG--RI----------------------------AHAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred cHHH-hcccHHHHHHHHHHHHhC--cc----------------------------hhhhhhcCCCCcCchhHHHHHHHHh
Confidence 3444 799999999999999732 22 2568999999999999999999999
Q ss_pred CCCe--e-----------eeccc---cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 350 NVPF--V-----------IADAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 350 ~~~f--v-----------~i~~s---~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
++.- . .|+.. |+++.+-.-...-+.++++.+...+........|++|||+|.|+..
T Consensus 63 NC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 63 NCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred cCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 7631 0 01111 1111000000113456777777766666677889999999999887
Q ss_pred cCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHHhccc
Q 008723 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISERRQ 476 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~~rr~ 476 (556)
..++||+.||+ ...+++||++++.. -+..++..|+.
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe~~Kip~TIlSRcq 171 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTEPQKIPNTILSRCQ 171 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCCcCcCchhhhhccc
Confidence 99999999984 34567777765543 34455555544
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=2e-10 Score=120.52 Aligned_cols=107 Identities=30% Similarity=0.440 Sum_probs=72.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+||+++++.|...+... ..+..+||+||+|+|||++|+++++.+
T Consensus 12 ~~~~-iig~~~~~~~l~~~~~~~------------------------------~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 12 TFED-VIGQEHIVQTLKNAIKNG------------------------------RIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred cHhh-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999999887521 012468999999999999999999998
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
... ++.++... ... ...++.++..+..........||+|||+|.+...
T Consensus 61 ~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~ 132 (355)
T TIGR02397 61 NCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-------NNG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS 132 (355)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-------cCC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH
Confidence 532 11111110 011 2234555555443322345679999999998765
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.||
T Consensus 133 --------------~~~~Ll~~le 142 (355)
T TIGR02397 133 --------------AFNALLKTLE 142 (355)
T ss_pred --------------HHHHHHHHHh
Confidence 7889999988
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=9.7e-11 Score=137.14 Aligned_cols=100 Identities=29% Similarity=0.418 Sum_probs=74.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.++. |+|+++.++.+.+.+... .+.+++|+||||||||++|++||..+
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC-------------------------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4454 899999888887776421 23789999999999999999999876
Q ss_pred ----------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ----------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
+.+++.++...+. ...|.|+. +..+..++..... ...+.||||||||.+...
T Consensus 219 ~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~ 281 (852)
T TIGR03346 219 VNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGA 281 (852)
T ss_pred hccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcC
Confidence 5677788777654 33577766 6677777765431 125789999999998753
No 139
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.20 E-value=1.8e-11 Score=126.97 Aligned_cols=148 Identities=26% Similarity=0.440 Sum_probs=114.8
Q ss_pred CCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHh
Q 008723 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
.+.|..|+.+....++++....++||.|++||||.++||+.+... +.||+-++|..+-+. ..-.++|..
T Consensus 207 v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~ 278 (511)
T COG3283 207 VAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGH 278 (511)
T ss_pred hhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcC
Confidence 466677777777777888888999999999999999999999776 569999999976532 122344544
Q ss_pred cc------cchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecC
Q 008723 382 AE------FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTK 454 (556)
Q Consensus 382 a~------~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~r 454 (556)
++ +.++.+.++.+|||||-.+++. +|..||++|. |....+.++ ..+.+
T Consensus 279 apg~~gk~GffE~AngGTVlLDeIgEmSp~--------------lQaKLLRFL~DGtFRRVGee--------~Ev~v--- 333 (511)
T COG3283 279 APGDEGKKGFFEQANGGTVLLDEIGEMSPR--------------LQAKLLRFLNDGTFRRVGED--------HEVHV--- 333 (511)
T ss_pred CCCCCCccchhhhccCCeEEeehhhhcCHH--------------HHHHHHHHhcCCceeecCCc--------ceEEE---
Confidence 33 3456678899999999999998 9999999997 666666554 33444
Q ss_pred ceEEEecCCCcChHHHHHhcccccccccCChh
Q 008723 455 DILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 455 nii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
|+.+|||+ ..++.+.+..+.|+.+++|.+.+
T Consensus 334 dVRVIcat-q~nL~~lv~~g~fReDLfyRLNV 364 (511)
T COG3283 334 DVRVICAT-QVNLVELVQKGKFREDLFYRLNV 364 (511)
T ss_pred EEEEEecc-cccHHHHHhcCchHHHHHHHhhe
Confidence 45567765 47899999999999999997765
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.6e-10 Score=126.30 Aligned_cols=107 Identities=27% Similarity=0.361 Sum_probs=71.9
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+
T Consensus 15 ~~~d-iiGq~~~v~~L~~~i~~~------------------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 15 TFSE-ILGQDAVVAVLKNALRFN------------------------------RAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444 899999999888887521 012458999999999999999999988
Q ss_pred CCC-------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccch
Q 008723 350 NVP-------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 350 ~~~-------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~ 404 (556)
... ++++++. ...| -..++.+.+............||||||+|.+..
T Consensus 64 ~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-----~~~g---id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~ 135 (451)
T PRK06305 64 NCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGA-----SHRG---IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK 135 (451)
T ss_pred cCCCcccCCCCCcccHHHHHHhcCCCCceEEeecc-----ccCC---HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH
Confidence 542 1111111 1111 123334333333222234678999999999987
Q ss_pred hhhcccccccCchHHHHHHHHHHHh
Q 008723 405 KAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 405 ~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
. .++.|++.||
T Consensus 136 ~--------------~~n~LLk~lE 146 (451)
T PRK06305 136 E--------------AFNSLLKTLE 146 (451)
T ss_pred H--------------HHHHHHHHhh
Confidence 6 7899999998
No 141
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.20 E-value=3e-10 Score=117.76 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
.+.|+. |++ |+||+++++.+...+... ..+..+||+||+|+|||+
T Consensus 14 kyrP~~----~~~-~~~~~~~~~~l~~~~~~~------------------------------~~~~~lll~G~~G~GKT~ 58 (316)
T PHA02544 14 KYRPST----IDE-CILPAADKETFKSIVKKG------------------------------RIPNMLLHSPSPGTGKTT 58 (316)
T ss_pred ccCCCc----HHH-hcCcHHHHHHHHHHHhcC------------------------------CCCeEEEeeCcCCCCHHH
Confidence 345544 444 899999999888877411 012345558999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
+|+++++.++.+++.+++.+ . . +. .....+........ ......||||||+|.+... ..
T Consensus 59 la~~l~~~~~~~~~~i~~~~-~-~--~~-~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~ 117 (316)
T PHA02544 59 VAKALCNEVGAEVLFVNGSD-C-R--ID-FVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DA 117 (316)
T ss_pred HHHHHHHHhCccceEeccCc-c-c--HH-HHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HH
Confidence 99999999998899998876 2 1 00 00111222211111 1135689999999988322 16
Q ss_pred HHHHHHHHh
Q 008723 421 QQALLKMLE 429 (556)
Q Consensus 421 ~~~LL~~LE 429 (556)
++.|..+|+
T Consensus 118 ~~~L~~~le 126 (316)
T PHA02544 118 QRHLRSFME 126 (316)
T ss_pred HHHHHHHHH
Confidence 777888887
No 142
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.20 E-value=2.7e-10 Score=118.53 Aligned_cols=114 Identities=26% Similarity=0.410 Sum_probs=73.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++|++.+++.|..++... ...+++|+||||||||++|+++++++
T Consensus 13 ~~~~-~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 13 LLED-ILGQDEVVERLSRAVDSP-------------------------------NLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred cHHH-hcCCHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3555 789999999988876410 11479999999999999999999988
Q ss_pred C-----CCeeeeccccccccC--c----------ccc------chHHHHHHHHHhcccchh-ccCCeEEEEecccccchh
Q 008723 350 N-----VPFVIADATTLTQAG--Y----------VGE------DVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~-----~~fv~i~~s~l~~sg--y----------vG~------~~e~~l~~lf~~a~~~l~-~a~~~VLfLDEID~l~~~ 405 (556)
. .+++.+++.++.... + .+. .....++.+......... .....+|||||+|.+...
T Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~ 140 (337)
T PRK12402 61 YGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED 140 (337)
T ss_pred cCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH
Confidence 4 346777876543110 0 010 001222222222111111 134569999999988765
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|+.+|+
T Consensus 141 --------------~~~~L~~~le 150 (337)
T PRK12402 141 --------------AQQALRRIME 150 (337)
T ss_pred --------------HHHHHHHHHH
Confidence 7788999887
No 143
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.8e-11 Score=130.09 Aligned_cols=180 Identities=25% Similarity=0.371 Sum_probs=111.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC---
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~--- 351 (556)
|+||+.||+++..+.. ...++||+||||||||++|+.+...|--
T Consensus 181 V~GQ~~AKrAleiAAA---------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~ 227 (490)
T COG0606 181 VKGQEQAKRALEIAAA---------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSI 227 (490)
T ss_pred hcCcHHHHHHHHHHHh---------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCCCh
Confidence 9999999999998874 2489999999999999999999876621
Q ss_pred -CeeeeccccccccCccccch----------------HHHHHHHHH----hcccchhccCCeEEEEecccccchhhhccc
Q 008723 352 -PFVIADATTLTQAGYVGEDV----------------ESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (556)
Q Consensus 352 -~fv~i~~s~l~~sgyvG~~~----------------e~~l~~lf~----~a~~~l~~a~~~VLfLDEID~l~~~r~~~~ 410 (556)
.+++++.-.. |.|... +.-...+.. -.+..+..++++||||||+-.+..+
T Consensus 228 ~E~lE~s~I~s----~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~----- 298 (490)
T COG0606 228 PEALEVSAIHS----LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS----- 298 (490)
T ss_pred HHHHHHHHHhh----hcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-----
Confidence 1111111000 111100 000111111 1234466789999999999887665
Q ss_pred ccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhccccccccc-CChhhhh
Q 008723 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF-GAPVRAN 489 (556)
Q Consensus 411 ~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f-~~p~~~~ 489 (556)
+++.|.+-||...+.|.. ...-+....++.+|++.|. +.+++ +.+.+..
T Consensus 299 ---------iLe~LR~PLE~g~i~IsR--------a~~~v~ypa~Fqlv~AmNp-------------cpcG~~~~~~~~C 348 (490)
T COG0606 299 ---------ILEALREPLENGKIIISR--------AGSKVTYPARFQLVAAMNP-------------CPCGNLGAPLRRC 348 (490)
T ss_pred ---------HHHHHhCccccCcEEEEE--------cCCeeEEeeeeEEhhhcCC-------------CCccCCCCCCCCc
Confidence 999999999955454422 2233556667888888774 34443 3333222
Q ss_pred hccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHH
Q 008723 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLV 540 (556)
Q Consensus 490 ~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~ 540 (556)
.+. ..++.. .. ..++-.|++|||..+....++..++.
T Consensus 349 ~c~---~~~~~~-Y~----------~klSgp~lDRiDl~vev~~~~~~e~~ 385 (490)
T COG0606 349 PCS---PRQIKR-YL----------NKLSGPFLDRIDLMVEVPRLSAGELI 385 (490)
T ss_pred CCC---HHHHHH-HH----------HHhhHHHHhhhhheecccCCCHHHhh
Confidence 211 111111 11 12677999999999999999866654
No 144
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.18 E-value=2.6e-10 Score=129.00 Aligned_cols=95 Identities=34% Similarity=0.490 Sum_probs=62.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh----------CCCeeeeccccccc------cCccccchHHH---HHHHHHh----
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLAQ---- 381 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l----------~~~fv~i~~s~l~~------sgyvG~~~e~~---l~~lf~~---- 381 (556)
+.+++|+|||||||||+|+++++.. +.+|+.++|..+.. ..++|...+.. ....+..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999766 34789999876420 01122110100 1111111
Q ss_pred --cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcccc
Q 008723 382 --AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (556)
Q Consensus 382 --a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v 433 (556)
....+....+++|||||++.|... .|+.|+++|+...+
T Consensus 255 ~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~~Ll~~Le~~~v 294 (615)
T TIGR02903 255 EPKTGLVTDAHGGVLFIDEIGELDPL--------------LQNKLLKVLEDKRV 294 (615)
T ss_pred chhcCchhhcCCCeEEEeccccCCHH--------------HHHHHHHHHhhCeE
Confidence 112233456789999999999887 89999999985443
No 145
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.17 E-value=1.7e-10 Score=128.02 Aligned_cols=198 Identities=18% Similarity=0.257 Sum_probs=112.5
Q ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHH
Q 008723 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (556)
Q Consensus 266 el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraL 345 (556)
.+...+...|+|++.+|+.|..++... .. +.. .+ ........||||+|+||||||++|+++
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg--------~~------~~~---~~--~~~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGG--------VH------KNL---PD--GMKIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCC--------Cc------ccc---CC--CccccccceEEEeCCCChhHHHHHHHH
Confidence 355566666999999988887766411 00 000 00 001123469999999999999999999
Q ss_pred HHHhCCC-eeee---ccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHH
Q 008723 346 ARHVNVP-FVIA---DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (556)
Q Consensus 346 A~~l~~~-fv~i---~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~ 421 (556)
++.+... |+.. ++..+... .+ .+ ....-+....+.+..+++++++|||+|++... .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~~-~~-~~---~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTAA-VT-RD---PETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCcccc-ce-Ec---cCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 9987542 3221 22112110 00 00 00000111122344567899999999999887 89
Q ss_pred HHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHH
Q 008723 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (556)
Q Consensus 422 ~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~ 501 (556)
..|+++||...+.+...| ....-..++.+|+|+|... ++++.....
T Consensus 318 ~~L~e~me~~~i~i~k~G--------~~~~l~~~~~viAa~NP~~-------g~y~~~~~~------------------- 363 (509)
T smart00350 318 TAIHEAMEQQTISIAKAG--------ITTTLNARCSVLAAANPIG-------GRYDPKLTP------------------- 363 (509)
T ss_pred HHHHHHHhcCEEEEEeCC--------EEEEecCCcEEEEEeCCCC-------cccCCCcCh-------------------
Confidence 999999996665543222 1122234577888888542 222111100
Q ss_pred HHHhhcCchHHHHcCCCHHHhccCCceeeC-CCCCHHHHHHHHhh
Q 008723 502 SLLESVESSDLIAYGLIPEFVGRFPILVSL-TALTEDQLVKVLTE 545 (556)
Q Consensus 502 ~l~~~l~~~dl~~~~l~Pell~R~~~iI~f-~~ls~eeL~qIl~~ 545 (556)
. .+..+.|.+++|||.+..+ +..+++.-.+|+..
T Consensus 364 --~--------~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 364 --E--------ENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred --h--------hccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 0 1123778888999876444 55666665666654
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=4e-10 Score=124.89 Aligned_cols=107 Identities=36% Similarity=0.463 Sum_probs=73.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + -+..+||+||+|+|||++|+++|+.+
T Consensus 12 ~fde-iiGqe~v~~~L~~~I~~g--r----------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 12 HFDE-LIGQESVSKTLSLALDNN--R----------------------------LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CHHH-ccCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455 899999999999887521 0 12346999999999999999999988
Q ss_pred CC------------------------CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~------------------------~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.. .++.+++.+- .| -..++.+..........+...|++|||+|.|..+
T Consensus 61 ~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~-----~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~ 132 (535)
T PRK08451 61 VCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN-----RG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE 132 (535)
T ss_pred cCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc-----cC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH
Confidence 43 1222222110 11 2345555544322222245679999999999877
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+++||+.||
T Consensus 133 --------------A~NALLK~LE 142 (535)
T PRK08451 133 --------------AFNALLKTLE 142 (535)
T ss_pred --------------HHHHHHHHHh
Confidence 8999999999
No 147
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=3.1e-10 Score=127.86 Aligned_cols=112 Identities=28% Similarity=0.346 Sum_probs=71.7
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|+|||++|+++|+.+
T Consensus 14 ~~~e-iiGq~~~~~~L~~~i~~~--~----------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 14 TFAE-LVGQEHVVQTLRNAIAEG--R----------------------------VAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred CHHH-hcCCHHHHHHHHHHHHhC--C----------------------------CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877521 0 12457999999999999999999998
Q ss_pred CCCeee---eccc--------------ccc---ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcc
Q 008723 350 NVPFVI---ADAT--------------TLT---QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (556)
Q Consensus 350 ~~~fv~---i~~s--------------~l~---~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~ 409 (556)
++.... ..|. ++. .....+ ...++++.+............||||||+|.|..+
T Consensus 63 ~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~---vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~---- 135 (585)
T PRK14950 63 NCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTS---VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA---- 135 (585)
T ss_pred cCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCC---HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH----
Confidence 642210 0000 010 000111 2234444443332222346689999999999876
Q ss_pred cccccCchHHHHHHHHHHHh
Q 008723 410 NISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 410 ~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 136 ----------a~naLLk~LE 145 (585)
T PRK14950 136 ----------AFNALLKTLE 145 (585)
T ss_pred ----------HHHHHHHHHh
Confidence 7899999998
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=2.5e-10 Score=127.78 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=72.8
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|++ |+||+.+++.|..++... + ....+||+||+|+|||++|+++|+.++
T Consensus 15 f~d-iiGqe~iv~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 15 FNS-LEGQDFVVETLKHSIESN--K----------------------------IANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHH-ccCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 444 899999999998888521 0 124599999999999999999999986
Q ss_pred CC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhh
Q 008723 351 VP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 351 ~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
+. ++++++.. ...-..++.+.+............|++|||+|.|...
T Consensus 64 c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas--------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~- 134 (563)
T PRK06647 64 CVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS--------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS- 134 (563)
T ss_pred cccCCCCCCCccchHHHHHHcCCCCCeEEecCcc--------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-
Confidence 42 11121110 0112344455443333222356789999999999876
Q ss_pred hcccccccCchHHHHHHHHHHHh
Q 008723 407 ESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 135 -------------a~naLLK~LE 144 (563)
T PRK06647 135 -------------AFNALLKTIE 144 (563)
T ss_pred -------------HHHHHHHhhc
Confidence 8999999998
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=3.2e-10 Score=127.93 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=73.5
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|++ |+||+.+++.|..++... + -...+||+||+||||||+|+.+|+.++
T Consensus 15 f~e-ivGQe~i~~~L~~~i~~~--r----------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 15 FAD-ITAQEHITHTIQNSLRMD--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred HHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 899999999988877521 0 124599999999999999999999997
Q ss_pred CCeee----------eccccc------c---ccC---ccccc--hHHHHHHHHHhcccchhccCCeEEEEecccccchhh
Q 008723 351 VPFVI----------ADATTL------T---QAG---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 351 ~~fv~----------i~~s~l------~---~sg---yvG~~--~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
+.-.. -.|... . ..+ +.|.+ ....++.+.+........+...|++|||+|.++..
T Consensus 64 c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~- 142 (620)
T PRK14954 64 CQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA- 142 (620)
T ss_pred CCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-
Confidence 63100 011100 0 000 11111 12345555544432222346679999999999876
Q ss_pred hcccccccCchHHHHHHHHHHHh
Q 008723 407 ESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.||+.||
T Consensus 143 -------------a~naLLK~LE 152 (620)
T PRK14954 143 -------------AFNAFLKTLE 152 (620)
T ss_pred -------------HHHHHHHHHh
Confidence 7899999999
No 150
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.15 E-value=2.9e-10 Score=124.20 Aligned_cols=147 Identities=23% Similarity=0.371 Sum_probs=105.9
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
..|.+..+..+.+.+..+.....+++|.|++|||||++|++++... +.+|+.++|..+.+ +..-..+|.
T Consensus 140 lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~--------~~~~~~lfg 211 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK--------DLIESELFG 211 (469)
T ss_pred ceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH--------HHHHHHhcC
Confidence 4577788888888888888889999999999999999999999987 46999999987642 111222332
Q ss_pred hc-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCc
Q 008723 381 QA-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDS 448 (556)
Q Consensus 381 ~a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ 448 (556)
.. ...+..+.++.||||||+.|... +|..|+++|+ +....+.+. ..
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~--------~~ 269 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGY--------AP 269 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCC--------Ce
Confidence 21 12345567889999999999988 9999999998 333332211 11
Q ss_pred eEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 449 ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
...++.+|+|++ .++.+.+..+.|+..++|..
T Consensus 270 ---~~~~~rii~~~~-~~l~~~~~~~~~~~~L~~~l 301 (469)
T PRK10923 270 ---VKVDVRIIAATH-QNLEQRVQEGKFREDLFHRL 301 (469)
T ss_pred ---EEeeEEEEEeCC-CCHHHHHHcCCchHHHHHHh
Confidence 123567777765 57788888878777666654
No 151
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=3.5e-10 Score=124.66 Aligned_cols=107 Identities=32% Similarity=0.408 Sum_probs=71.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + ....+||+||+|+|||++|+.+|+.+
T Consensus 14 ~f~d-iiGq~~i~~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 14 FFKE-VIGQEIVVRILKNAVKLQ--R----------------------------VSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred cHHH-ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998888521 0 11347899999999999999999998
Q ss_pred CCC------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 ~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
++. ++.+++++ -.| ...++.+..........+...|++|||+|.++..
T Consensus 63 ~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas-----~~g---vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~ 134 (486)
T PRK14953 63 NCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS-----NRG---IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE 134 (486)
T ss_pred cCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc-----CCC---HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH
Confidence 641 11111110 011 1233444433332222346689999999998876
Q ss_pred hhcccccccCchHHHHHHHHHHHh
Q 008723 406 AESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.|+
T Consensus 135 --------------a~naLLk~LE 144 (486)
T PRK14953 135 --------------AFNALLKTLE 144 (486)
T ss_pred --------------HHHHHHHHHh
Confidence 7899999998
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=6.8e-10 Score=117.87 Aligned_cols=112 Identities=29% Similarity=0.380 Sum_probs=73.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+||+.+++.+...+... ..+.++||+||+|+|||++|+++|+.+
T Consensus 15 ~~~~-iig~~~~~~~l~~~i~~~------------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 15 TFDD-VVGQSHITNTLLNAIENN------------------------------HLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred cHHh-cCCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 799999999888887521 013579999999999999999999988
Q ss_pred CCCeeeecc-------ccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 350 NVPFVIADA-------TTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 350 ~~~fv~i~~-------s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
..+.....+ .++.... ... ...++.+++.+..........||||||+|.+... .++
T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~ 126 (367)
T PRK14970 64 NQPGYDDPNEDFSFNIFELDAAS--NNS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFN 126 (367)
T ss_pred cCCCCCCCCCCCCcceEEecccc--CCC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHH
Confidence 653221111 0111000 011 2445566654432222345679999999988765 788
Q ss_pred HHHHHHh
Q 008723 423 ALLKMLE 429 (556)
Q Consensus 423 ~LL~~LE 429 (556)
.|++.|+
T Consensus 127 ~ll~~le 133 (367)
T PRK14970 127 AFLKTLE 133 (367)
T ss_pred HHHHHHh
Confidence 8999887
No 153
>PRK15115 response regulator GlrR; Provisional
Probab=99.13 E-value=5.1e-10 Score=121.37 Aligned_cols=147 Identities=20% Similarity=0.331 Sum_probs=106.0
Q ss_pred CCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHh
Q 008723 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
.+.+..+....+....++....+++|.|++|||||++|+++++.. +.+|+.++|..+.+. ..-..+|..
T Consensus 137 ig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~ 208 (444)
T PRK15115 137 VTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGH 208 (444)
T ss_pred cccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCC
Confidence 456677777777777788888999999999999999999999886 469999999876421 111223322
Q ss_pred c-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCce
Q 008723 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSI 449 (556)
Q Consensus 382 a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~i 449 (556)
. ...+..+.+++||||||+.|... +|..|+++|+. ....+.+. .
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~--------~-- 264 (444)
T PRK15115 209 ARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSN--------R-- 264 (444)
T ss_pred CcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCC--------c--
Confidence 1 12345567899999999999988 99999999983 22222111 1
Q ss_pred EEecCceEEEecCCCcChHHHHHhcccccccccCCh
Q 008723 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 450 vid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p 485 (556)
....++.+|++++ .++.+.+..+.|+..++|...
T Consensus 265 -~~~~~~rii~~~~-~~l~~~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 265 -DIDIDVRIISATH-RDLPKAMARGEFREDLYYRLN 298 (444)
T ss_pred -eeeeeEEEEEeCC-CCHHHHHHcCCccHHHHHhhc
Confidence 1123567777776 569999999999888877544
No 154
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.12 E-value=7.5e-10 Score=120.09 Aligned_cols=146 Identities=20% Similarity=0.366 Sum_probs=104.9
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
..+.+..+..+.+.+..+.....+++|.|++||||+++|++++... +.+|+.++|..+.+. ..-..+|.
T Consensus 141 lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~--------~~~~~lfg 212 (445)
T TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN--------LLESELFG 212 (445)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH--------HHHHHhcC
Confidence 4577788888888888888888999999999999999999999876 458999999876421 11112222
Q ss_pred h-----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc-cccCCCCcccCCCCCc
Q 008723 381 Q-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDS 448 (556)
Q Consensus 381 ~-----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~-v~ipe~g~r~~~~~~~ 448 (556)
. ....+..+.+++||||||+.|... +|..|+++|+... ..+... ..
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~--------~~ 270 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGR--------EE 270 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCC--------ce
Confidence 1 122345578899999999999988 9999999998332 222111 11
Q ss_pred eEEecCceEEEecCCCcChHHHHHhcccccccccC
Q 008723 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (556)
Q Consensus 449 ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~ 483 (556)
...++.+|++++ .++++.+..+.|+..++|.
T Consensus 271 ---~~~~~rii~~~~-~~l~~~~~~~~~~~~L~~~ 301 (445)
T TIGR02915 271 ---IPVDVRIVCATN-QDLKRMIAEGTFREDLFYR 301 (445)
T ss_pred ---eeeceEEEEecC-CCHHHHHHcCCccHHHHHH
Confidence 123566777665 6788888888888776654
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.10 E-value=1.4e-09 Score=112.07 Aligned_cols=108 Identities=30% Similarity=0.437 Sum_probs=68.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ++|++++++.|...+... ...+++|+||+|||||++|+++++.+
T Consensus 15 ~~~~-~~g~~~~~~~l~~~i~~~-------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 15 TLDE-IVGQEEIVERLKSYVKEK-------------------------------NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHH-hcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455 789999999988877411 12469999999999999999999987
Q ss_pred CC-----CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHH
Q 008723 350 NV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (556)
Q Consensus 350 ~~-----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~L 424 (556)
.. .++.+++++..... .....+..+..... +......+|+|||+|.+... .++.|
T Consensus 63 ~~~~~~~~~i~~~~~~~~~~~----~~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~L 122 (319)
T PRK00440 63 YGEDWRENFLELNASDERGID----VIRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQAL 122 (319)
T ss_pred cCCccccceEEeccccccchH----HHHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHHH
Confidence 32 34444443321100 00112222211111 11134579999999998765 67889
Q ss_pred HHHHh
Q 008723 425 LKMLE 429 (556)
Q Consensus 425 L~~LE 429 (556)
+++|+
T Consensus 123 ~~~le 127 (319)
T PRK00440 123 RRTME 127 (319)
T ss_pred HHHHh
Confidence 98887
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.1e-09 Score=123.95 Aligned_cols=107 Identities=27% Similarity=0.387 Sum_probs=74.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+||+.+++.|..++... + -...+||+||+|+|||++|+++|+.+
T Consensus 15 ~f~~-viGq~~~~~~L~~~i~~~--~----------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 15 TFES-VVGQEALTTTLKNAIATN--K----------------------------LAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887521 0 12448999999999999999999988
Q ss_pred CCC-------------------------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccch
Q 008723 350 NVP-------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 350 ~~~-------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~ 404 (556)
++. ++.+++.+. .....++.+...+......+...|++|||+|.|..
T Consensus 64 ~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 64 NCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred CCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 642 122222110 11234556555544333334667999999999987
Q ss_pred hhhcccccccCchHHHHHHHHHHHh
Q 008723 405 KAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 405 ~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
. .++.|++.||
T Consensus 136 ~--------------a~naLLK~LE 146 (614)
T PRK14971 136 A--------------AFNAFLKTLE 146 (614)
T ss_pred H--------------HHHHHHHHHh
Confidence 6 8999999999
No 157
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-09 Score=117.25 Aligned_cols=175 Identities=18% Similarity=0.220 Sum_probs=112.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccch
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~ 404 (556)
+++.||+||||||||++.-|+|++|++.++.++.+++... . .++.++.... ..+||+|.+||....
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-------~-dLr~LL~~t~------~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-------S-DLRHLLLATP------NKSILLIEDIDCSFD 300 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-------H-HHHHHHHhCC------CCcEEEEeecccccc
Confidence 3789999999999999999999999999999988876532 2 2778776655 678999999997644
Q ss_pred hhhcccc---ccc-CchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHH-HHhccccc
Q 008723 405 KAESLNI---SRD-VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKT-ISERRQDS 478 (556)
Q Consensus 405 ~r~~~~~---~~~-~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~-i~~rr~~~ 478 (556)
.++...- ... ....-.+.-||..+||---.. +..-|+|+|+|..+ ||.+ ++++|.+.
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc-----------------g~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC-----------------GDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhccccccC-----------------CCceEEEEecCChhhcCHhhcCCCccee
Confidence 2221111 000 011236788999999732221 12346677777776 5554 56679999
Q ss_pred ccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhh
Q 008723 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (556)
Q Consensus 479 ~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~ 545 (556)
.|+++.-..+.+ +......+..++ .+.+..-|...+.=..+++.|+.+.+..
T Consensus 364 hI~mgyCtf~~f---------K~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 364 HIYMGYCTFEAF---------KTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred EEEcCCCCHHHH---------HHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 998887654443 233333332211 2334444433555566788887777643
No 158
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.08 E-value=5.2e-11 Score=109.36 Aligned_cols=122 Identities=29% Similarity=0.538 Sum_probs=83.1
Q ss_pred CCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC---CeeeeccccccccCccccchHHHHHHHHHhc
Q 008723 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV---PFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (556)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~---~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a 382 (556)
|.|..|+++.+.++.++....+|+|+|++||||+++|++|+..... +|+.++|..+. .++++.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~- 67 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ- 67 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH-
Confidence 5566666777777777778899999999999999999999988743 67777776432 123332
Q ss_pred ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecC
Q 008723 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGG 462 (556)
Q Consensus 383 ~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~ 462 (556)
+.+++|||+|||.+..+ .|..|+..|+. ....++.+|+++
T Consensus 68 ------a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~~--------------------~~~~~~RlI~ss 107 (138)
T PF14532_consen 68 ------AKGGTLYLKNIDRLSPE--------------AQRRLLDLLKR--------------------QERSNVRLIASS 107 (138)
T ss_dssp ------CTTSEEEEECGCCS-HH--------------HHHHHHHHHHH--------------------CTTTTSEEEEEE
T ss_pred ------cCCCEEEECChHHCCHH--------------HHHHHHHHHHh--------------------cCCCCeEEEEEe
Confidence 36789999999999988 89999999882 012334556654
Q ss_pred CCcChHHHHHhccccccccc
Q 008723 463 AFVDLEKTISERRQDSSIGF 482 (556)
Q Consensus 463 n~~dl~~~i~~rr~~~~i~f 482 (556)
. .++++.+..+.|+..++|
T Consensus 108 ~-~~l~~l~~~~~~~~~L~~ 126 (138)
T PF14532_consen 108 S-QDLEELVEEGRFSPDLYY 126 (138)
T ss_dssp C-C-CCCHHHHSTHHHHHHH
T ss_pred C-CCHHHHhhccchhHHHHH
Confidence 4 455566666666555444
No 159
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.05 E-value=1.9e-09 Score=117.44 Aligned_cols=145 Identities=23% Similarity=0.389 Sum_probs=99.4
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
..+.++.+..+.+.+..+.....++++.|++||||+++|++++... +.+|+.++|..+.+. ..-..+|.
T Consensus 136 lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~--------~~~~~lfg 207 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKD--------LIESELFG 207 (463)
T ss_pred eeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH--------HHHHHhcC
Confidence 3466777777777777777888999999999999999999999876 459999999876421 11112222
Q ss_pred h-----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCc
Q 008723 381 Q-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDS 448 (556)
Q Consensus 381 ~-----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ 448 (556)
. ....+..+.+++||||||+.|... +|..|+++|+ +....+.+. ..
T Consensus 208 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~--------~~ 265 (463)
T TIGR01818 208 HEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGR--------TP 265 (463)
T ss_pred CCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCC--------ce
Confidence 1 112244567899999999999988 8999999998 333222111 11
Q ss_pred eEEecCceEEEecCCCcChHHHHHhccccccccc
Q 008723 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (556)
Q Consensus 449 ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f 482 (556)
+ ..++.+|++++ .++++.+..+.|+..++|
T Consensus 266 ~---~~~~rii~~~~-~~l~~~~~~~~f~~~L~~ 295 (463)
T TIGR01818 266 I---KVDVRIVAATH-QNLEALVRQGKFREDLFH 295 (463)
T ss_pred e---eeeeEEEEeCC-CCHHHHHHcCCcHHHHHH
Confidence 1 22455677665 567777777666654444
No 160
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.04 E-value=1.1e-09 Score=119.14 Aligned_cols=147 Identities=20% Similarity=0.339 Sum_probs=105.6
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHH
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
..+.++.+..+.+.+..++....++++.|++||||+++|++++... +.+|+.++|..+.+. ..-..+|.
T Consensus 145 ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~--------~~~~~lfg 216 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES--------LLESELFG 216 (457)
T ss_pred eecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH--------HHHHHhcC
Confidence 4567778888888888888889999999999999999999999876 469999999876421 11122222
Q ss_pred hc-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc-cccCCCCcccCCCCCc
Q 008723 381 QA-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDS 448 (556)
Q Consensus 381 ~a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~-v~ipe~g~r~~~~~~~ 448 (556)
.. ...+..+.+++||||||+.|... +|..|+.+|+... ..+... ..
T Consensus 217 ~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~--------~~ 274 (457)
T PRK11361 217 HEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGH--------QT 274 (457)
T ss_pred CCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------ce
Confidence 11 12344567899999999999988 9999999998432 222111 11
Q ss_pred eEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 449 ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
...++.+|++++ .++.+++..+.|+..++|..
T Consensus 275 ---~~~~~rii~~t~-~~l~~~~~~g~~~~~l~~~l 306 (457)
T PRK11361 275 ---IKVDIRIIAATN-RDLQAMVKEGTFREDLFYRL 306 (457)
T ss_pred ---eeeceEEEEeCC-CCHHHHHHcCCchHHHHHHh
Confidence 123566777766 67888888888888776543
No 161
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.9e-09 Score=113.55 Aligned_cols=119 Identities=25% Similarity=0.329 Sum_probs=77.4
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
+.|++..+ |+||+.+++.|..++... + -+..+||+||+|+||+++
T Consensus 13 ~~P~~~~~-----iiGq~~~~~~L~~~~~~~--r----------------------------l~HA~Lf~Gp~G~GK~~l 57 (365)
T PRK07471 13 PHPRETTA-----LFGHAAAEAALLDAYRSG--R----------------------------LHHAWLIGGPQGIGKATL 57 (365)
T ss_pred CCCCchhh-----ccChHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHH
Confidence 46665544 899999999999888521 0 124599999999999999
Q ss_pred HHHHHHHhCCCee-e--------------eccc-----------ccc--ccCccccc-------hHHHHHHHHHhcccch
Q 008723 342 AKTLARHVNVPFV-I--------------ADAT-----------TLT--QAGYVGED-------VESILYKLLAQAEFNV 386 (556)
Q Consensus 342 AraLA~~l~~~fv-~--------------i~~s-----------~l~--~sgyvG~~-------~e~~l~~lf~~a~~~l 386 (556)
|.++|+.+.+.-- . -.|. ++. ...+.... ..+.++++........
T Consensus 58 A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~ 137 (365)
T PRK07471 58 AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA 137 (365)
T ss_pred HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc
Confidence 9999998843110 0 0010 000 00000000 0234556655554444
Q ss_pred hccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 387 EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 387 ~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
....+.||+|||+|.+... .++.||+.||
T Consensus 138 ~~~~~kVviIDead~m~~~--------------aanaLLK~LE 166 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNAN--------------AANALLKVLE 166 (365)
T ss_pred ccCCCEEEEEechHhcCHH--------------HHHHHHHHHh
Confidence 4456789999999999877 8999999998
No 162
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=4e-09 Score=111.90 Aligned_cols=120 Identities=26% Similarity=0.352 Sum_probs=74.7
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
+.|++..+ |+||+++++.|..++... ..+..+||+||+|+|||++
T Consensus 17 ~~P~~~~~-----l~Gh~~a~~~L~~a~~~g------------------------------rl~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 17 PSPSENTR-----LFGHEEAEAFLAQAYREG------------------------------KLHHALLFEGPEGIGKATL 61 (351)
T ss_pred CCCCchhh-----ccCcHHHHHHHHHHHHcC------------------------------CCCeeEeeECCCCCCHHHH
Confidence 45655544 899999999999988521 0124599999999999999
Q ss_pred HHHHHHHhCC-------Ceeee-cc---cc--cccc----Cc--cc----c------c--hHHHHHHHHHhcccchhccC
Q 008723 342 AKTLARHVNV-------PFVIA-DA---TT--LTQA----GY--VG----E------D--VESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 342 AraLA~~l~~-------~fv~i-~~---s~--l~~s----gy--vG----~------~--~e~~l~~lf~~a~~~l~~a~ 390 (556)
|+.+|+.+.. +.... .| .. .+.. ++ +. . . ..+.++++.+..........
T Consensus 62 A~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~ 141 (351)
T PRK09112 62 AFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGN 141 (351)
T ss_pred HHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCC
Confidence 9999999855 11100 11 10 0000 00 00 0 0 01234444333222222345
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
..|++|||+|.|... .++.||+.||+
T Consensus 142 ~rVviIDeAd~l~~~--------------aanaLLk~LEE 167 (351)
T PRK09112 142 WRIVIIDPADDMNRN--------------AANAILKTLEE 167 (351)
T ss_pred ceEEEEEchhhcCHH--------------HHHHHHHHHhc
Confidence 579999999999877 88999999983
No 163
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.03 E-value=5e-09 Score=105.12 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=114.4
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
+++ ++|.|+.|+.|.+...... .. .+..|+||+|+.|||||+++|++..++
T Consensus 26 l~~-L~Gie~Qk~~l~~Nt~~Fl-----~G----------------------~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 26 LDD-LIGIERQKEALIENTEQFL-----QG----------------------LPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred HHH-hcCHHHHHHHHHHHHHHHH-----cC----------------------CCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 444 7999999999988775321 11 134799999999999999999999877
Q ss_pred --CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHH
Q 008723 350 --NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 427 (556)
Q Consensus 350 --~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~ 427 (556)
+..++++...++..- ..++ ..+...+ ..=|||+|++. +... +.--..|-.+
T Consensus 78 ~~GLRlIev~k~~L~~l-------~~l~-~~l~~~~------~kFIlf~DDLs-Fe~~------------d~~yk~LKs~ 130 (249)
T PF05673_consen 78 DQGLRLIEVSKEDLGDL-------PELL-DLLRDRP------YKFILFCDDLS-FEEG------------DTEYKALKSV 130 (249)
T ss_pred hcCceEEEECHHHhccH-------HHHH-HHHhcCC------CCEEEEecCCC-CCCC------------cHHHHHHHHH
Confidence 667888887766531 2233 3333222 34599999855 3222 1145678889
Q ss_pred HhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH-HHHhcccccccccCChhhhhhccccchhHhHHHHHhh
Q 008723 428 LEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK-TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (556)
Q Consensus 428 LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~-~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~ 506 (556)
|||.+-. -..|+++.+|+|..-|.. ...++.. . .-+.
T Consensus 131 LeGgle~-----------------~P~NvliyATSNRRHLv~E~~~d~~~--------~-----------------~~~e 168 (249)
T PF05673_consen 131 LEGGLEA-----------------RPDNVLIYATSNRRHLVPESFSDRED--------I-----------------QDDE 168 (249)
T ss_pred hcCcccc-----------------CCCcEEEEEecchhhccchhhhhccC--------C-----------------Cccc
Confidence 9974432 345677888888654321 1111110 0 0011
Q ss_pred cCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 507 VESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 507 l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
+-+.|.++..+ .|.+||...|.|.+++.++..+|+.....
T Consensus 169 ih~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 169 IHPSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred cCcchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 22222222222 78899999999999999999999976654
No 164
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.03 E-value=5.2e-09 Score=93.01 Aligned_cols=87 Identities=36% Similarity=0.585 Sum_probs=57.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHH-HHHhcccchhccCCeEEEEeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYK-LLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~-lf~~a~~~l~~a~~~VLfLDEID 400 (556)
..+++|+||||||||++++.+++.+ +.+++.+++.+..... .. ...... .............+.+|+|||++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VV---AELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HH---HHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 3689999999999999999999998 7888888887654321 00 000000 00000011112367899999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+... ....++..|+
T Consensus 95 ~~~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 95 SLSRG--------------AQNALLRVLE 109 (151)
T ss_pred hhhHH--------------HHHHHHHHHH
Confidence 88544 5667777776
No 165
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.01 E-value=1.7e-10 Score=127.45 Aligned_cols=154 Identities=21% Similarity=0.368 Sum_probs=114.5
Q ss_pred CCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh--CCCeeeeccccc----cccCccccchHHHHHHHH
Q 008723 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--NVPFVIADATTL----TQAGYVGEDVESILYKLL 379 (556)
Q Consensus 306 g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l--~~~fv~i~~s~l----~~sgyvG~~~e~~l~~lf 379 (556)
+.........+..+++.....++++.|+|||||-.+||+|++.. ..||+-++|..+ .++.++|+..........
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~ 396 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARR 396 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchh
Confidence 44455666677788888889999999999999999999999877 459999999843 344455555322221222
Q ss_pred HhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEE
Q 008723 380 AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILF 458 (556)
Q Consensus 380 ~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~ 458 (556)
+.....++.+.++.||||||..|.-. +|..||++|+ +.++.++.. . +.||.+ +
T Consensus 397 kG~~g~~~~A~gGtlFldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~g~~--------~-~~vdir---v 450 (606)
T COG3284 397 KGYKGKLEQADGGTLFLDEIGDMPLA--------------LQSRLLRVLQEGVVTPLGGT--------R-IKVDIR---V 450 (606)
T ss_pred ccccccceecCCCccHHHHhhhchHH--------------HHHHHHHHHhhCceeccCCc--------c-eeEEEE---E
Confidence 23345677789999999999999877 9999999998 656655333 1 445444 4
Q ss_pred EecCCCcChHHHHHhcccccccccCChh
Q 008723 459 ICGGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 459 I~t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
|+ ++..||..++..++|+.++||.+..
T Consensus 451 i~-ath~dl~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 451 IA-ATHRDLAQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred Ee-ccCcCHHHHHHcCCchHHHHHHhcC
Confidence 55 4558999999999999999997665
No 166
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.01 E-value=2.3e-09 Score=123.78 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcc--cccccccCCcEEEeCCCCChhHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDN--DDNVELEKSNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~--~~~v~~~~~~vLL~GPpGTGKTtlAra 344 (556)
+...+-..|.|++.+|+.|.-++.. . ..+..... ...+. ...-.....||||+|+||||||.+|++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~g-------G-~~k~~~~~----~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~ 511 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFS-------G-NKNSSDFN----KSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHY 511 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhc-------C-Cccccccc----cccccccccccccCCceEEEeCCCCccHHHHHHH
Confidence 3344444589999999888666531 1 11100000 00000 001123457999999999999999999
Q ss_pred HHHHhC-------CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCch
Q 008723 345 LARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 345 LA~~l~-------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~ 417 (556)
+++... .++..+.++.... +.... ...+....+.+..+.+++++|||++++...
T Consensus 512 Ih~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------ 572 (915)
T PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------ 572 (915)
T ss_pred HHHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH------------
Confidence 998653 2333333332210 00000 000111123345677899999999999887
Q ss_pred HHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 418 ~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
.|..|+++||...+.|...| ....-..++.+|+|+|+.
T Consensus 573 --~Q~aLlEaMEqqtIsI~KaG--------i~~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 --SRLSLYEVMEQQTVTIAKAG--------IVATLKAETAILASCNPI 610 (915)
T ss_pred --HHHHHHHHHhCCEEEEecCC--------cceecCCCeEEEEEcCCc
Confidence 89999999996666553332 112233567788888864
No 167
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.99 E-value=5.4e-09 Score=106.78 Aligned_cols=215 Identities=19% Similarity=0.275 Sum_probs=125.5
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
..+...++..|+..|.||.-|++.|..++..++.. .. + ..+-.+-|+|++||||..
T Consensus 70 ~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---~~-------p--------------~KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 70 RNDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN---PN-------P--------------RKPLVLSFHGWTGTGKNY 125 (344)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---CC-------C--------------CCCeEEEecCCCCCchhH
Confidence 34466799999999999999999999998755322 00 0 123456689999999999
Q ss_pred HHHHHHHHhC-----CCeee--eccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 341 LAKTLARHVN-----VPFVI--ADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 341 lAraLA~~l~-----~~fv~--i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
+++.||+.+- .+|+. +....+-...++ +.--.++-......++..+.+++++||+|+|.+.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i----e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI----EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG-------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHH----HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh--------
Confidence 9999998772 23321 111111111111 1111122222233444557889999999999987
Q ss_pred cCchHHHHHHHHHHHhccccccCCCCcccCCCCCce-EEecCceEEEecCCCcC--hHH----HHHhcccccccccCChh
Q 008723 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSI-QMDTKDILFICGGAFVD--LEK----TISERRQDSSIGFGAPV 486 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~i-vid~rnii~I~t~n~~d--l~~----~i~~rr~~~~i~f~~p~ 486 (556)
+.++|-.+||-. ..+ -++.++.+||+-+|... +.+ ..+.+..+..+.+..-
T Consensus 194 ------Lld~lkpfLdyy---------------p~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~- 251 (344)
T KOG2170|consen 194 ------LLDVLKPFLDYY---------------PQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSF- 251 (344)
T ss_pred ------HHHHHhhhhccc---------------cccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhh-
Confidence 888888888710 011 15778888888555432 222 2233333333333221
Q ss_pred hhhhccccchhHhHHHHHhhcCchH---HHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 487 RANMRAGVTDAAVTSSLLESVESSD---LIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~~l~~~d---l~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
...++.....+. +....++++ ++||.+|+|-++++..+++.+.....
T Consensus 252 -------------E~~L~~~~~n~~~~Gl~~S~li~~--~lid~fIPFLPLek~hV~~C~r~el~ 301 (344)
T KOG2170|consen 252 -------------EPALMQSAFNEKAGGLVHSRLISN--NLIDHFIPFLPLEKRHVRSCIRAELR 301 (344)
T ss_pred -------------hHHHHHhhhccccccccccccchh--hHHhhccCcCcccHHHHHHHHHHHHH
Confidence 122222221111 111123332 56889999999999999987765443
No 168
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.99 E-value=4.5e-09 Score=110.92 Aligned_cols=60 Identities=25% Similarity=0.398 Sum_probs=45.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---- 350 (556)
++|.++.++.|...+..... . ..+.+++|+||||||||++++.+++.+.
T Consensus 17 l~gRe~e~~~l~~~l~~~~~----~-----------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~ 69 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILR----G-----------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAE 69 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999888752110 0 1236799999999999999999998763
Q ss_pred -----CCeeeeccccc
Q 008723 351 -----VPFVIADATTL 361 (556)
Q Consensus 351 -----~~fv~i~~s~l 361 (556)
..++.++|...
T Consensus 70 ~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 70 DRDVRVVTVYVNCQIL 85 (365)
T ss_pred ccCCceEEEEEECCCC
Confidence 46778888654
No 169
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.99 E-value=1.2e-09 Score=120.54 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=96.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC--eeeeccccccc--------cC-----cc-ccchHHHHHHHHH----hccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATTLTQ--------AG-----YV-GEDVESILYKLLA----QAEF 384 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~--fv~i~~s~l~~--------sg-----yv-G~~~e~~l~~lf~----~a~~ 384 (556)
..+++|.||+|+|||++++.|+..+.-. -..+..+.+.+ .. |. .+. ..-...++. ...+
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGPG 288 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehhh
Confidence 4789999999999999999999876310 00111111100 00 00 000 000111121 1223
Q ss_pred chhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 385 ~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
.+..+++++|||||++.+... +++.|++.||...+.|...+ .......++.+|+|.|.
T Consensus 289 ~l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g--------~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTR--------AKITYPARFQLVAAMNP 346 (506)
T ss_pred HhhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCC--------cceeccCCEEEEEeecC
Confidence 466778999999999998877 99999999996666554332 11233467888888885
Q ss_pred cChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHc--CCCHHHhccCCceeeCCCCCHHHHH
Q 008723 465 VDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAY--GLIPEFVGRFPILVSLTALTEDQLV 540 (556)
Q Consensus 465 ~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~--~l~Pell~R~~~iI~f~~ls~eeL~ 540 (556)
.. .++..... -.| .++++.+| .+...+++|||..+.++..+.++|.
T Consensus 347 ~p-------------cG~~~~~~-c~c----------------~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 347 SP-------------TGHYQGNH-NRC----------------TPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred cc-------------ceecCCCC-CCc----------------CHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh
Confidence 31 22221110 111 11122222 2788999999999999988776554
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=6.9e-09 Score=108.54 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=74.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+||+.+++.|..++... + -+..+||+||.|+||+++|+++|+.+.
T Consensus 3 f~~-iiGq~~~~~~L~~~i~~~--r----------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 3 FAN-LIGQPLAIELLTAAIKQN--R----------------------------IAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHH-hCCHHHHHHHHHHHHHhC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344 899999999999988521 0 136899999999999999999999874
Q ss_pred CCe----------eeecccccc--ccCc--cccc-------------------hHHHHHHHHHhcccchhccCCeEEEEe
Q 008723 351 VPF----------VIADATTLT--QAGY--VGED-------------------VESILYKLLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 351 ~~f----------v~i~~s~l~--~sgy--vG~~-------------------~e~~l~~lf~~a~~~l~~a~~~VLfLD 397 (556)
..- ...+-.|+. ...| .|.. .-+.++++..........+...|++||
T Consensus 52 c~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~ 131 (314)
T PRK07399 52 SQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIE 131 (314)
T ss_pred CCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEE
Confidence 321 001111111 0000 0100 012345554444333233467899999
Q ss_pred cccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 398 EID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
++|+|... ..++||+.||+
T Consensus 132 ~ae~m~~~--------------aaNaLLK~LEE 150 (314)
T PRK07399 132 DAETMNEA--------------AANALLKTLEE 150 (314)
T ss_pred chhhcCHH--------------HHHHHHHHHhC
Confidence 99999877 89999999993
No 171
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.98 E-value=3.5e-09 Score=104.06 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=53.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
..+++|+||+|||||++|+++++.+ +.+++.+++.++... ...++... ....+|||||++.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~ 101 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEA 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhh
Confidence 3789999999999999999999877 457788888766521 01222211 1335999999998
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..... .++.|..+++
T Consensus 102 l~~~~~------------~~~~L~~~l~ 117 (226)
T TIGR03420 102 IAGQPE------------WQEALFHLYN 117 (226)
T ss_pred hcCChH------------HHHHHHHHHH
Confidence 865410 3666777765
No 172
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=1.3e-08 Score=108.66 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=46.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----- 349 (556)
++|.+...+.|...+..... . ..+.+++|+||||||||++++.+++.+
T Consensus 32 l~~Re~e~~~l~~~l~~~~~--------~-------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~ 84 (394)
T PRK00411 32 LPHREEQIEELAFALRPALR--------G-------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV 84 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhC--------C-------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 78999998888888752210 0 123679999999999999999999877
Q ss_pred CCCeeeeccccc
Q 008723 350 NVPFVIADATTL 361 (556)
Q Consensus 350 ~~~fv~i~~s~l 361 (556)
+..++.++|...
T Consensus 85 ~~~~v~in~~~~ 96 (394)
T PRK00411 85 KVVYVYINCQID 96 (394)
T ss_pred CcEEEEEECCcC
Confidence 467888888643
No 173
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=6.6e-09 Score=108.26 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=73.7
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|++ |+||+.+++.|...+... .-+..+||+||.|+|||++|+.+|+.+.
T Consensus 3 ~~~-i~g~~~~~~~l~~~~~~~------------------------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 3 FHT-IIGHENIKNRIKNSIIKN------------------------------RFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred hhh-ccCcHHHHHHHHHHHHcC------------------------------CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 455 899999999998887411 0124579999999999999999999874
Q ss_pred CC--------eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 351 VP--------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 351 ~~--------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
+. ++.+... +..-+ . .+.++++.+............|++||++|.++.. .++
T Consensus 52 c~~~~~~h~D~~~~~~~---~~~~i--~-v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~n 111 (313)
T PRK05564 52 GKSQQREYVDIIEFKPI---NKKSI--G-VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQN 111 (313)
T ss_pred CCCCCCCCCCeEEeccc---cCCCC--C-HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHH
Confidence 32 2222211 00111 1 2345566554333222346779999999999877 899
Q ss_pred HHHHHHhc
Q 008723 423 ALLKMLEG 430 (556)
Q Consensus 423 ~LL~~LEg 430 (556)
.||+.||+
T Consensus 112 aLLK~LEe 119 (313)
T PRK05564 112 AFLKTIEE 119 (313)
T ss_pred HHHHHhcC
Confidence 99999993
No 174
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=7.9e-09 Score=99.50 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=55.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC------------------------eeeeccccccccCccccchHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
..+||+||+|+|||++|+.+++.+... |..+.... ...+ .+.++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHHHH
Confidence 569999999999999999999988432 11111100 0011 2344445544
Q ss_pred cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 382 a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..........||+|||+|.+... .++.||..||
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le 121 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLE 121 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhc
Confidence 433222346679999999999877 7899999998
No 175
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=1.7e-08 Score=109.51 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=75.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC--Ceeeeccc---------cccc---cCccccch-HHHHHHHHHhcccchhcc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADAT---------TLTQ---AGYVGEDV-ESILYKLLAQAEFNVEAA 389 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~--~fv~i~~s---------~l~~---sgyvG~~~-e~~l~~lf~~a~~~l~~a 389 (556)
+.+++|+||||||||++|+.+|..+.. .+..+.+. +++. ...+|... ...+.+++..+... ..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~ 271 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PE 271 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--cc
Confidence 479999999999999999999998843 12222221 1110 01122111 11222333333211 12
Q ss_pred CCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc----ccccCCCCcccCCC-CCceEEecCceEEEecCCC
Q 008723 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----IVNVPEKGARKHPR-GDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 390 ~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~----~v~ipe~g~r~~~~-~~~ivid~rnii~I~t~n~ 464 (556)
.+.|||||||++...+ .+...|+.+||.. ...++-. ... ......-..|+.+|+|.|.
T Consensus 272 ~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~----y~e~d~e~f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 272 KKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLT----YSENDEERFYVPENVYIIGLMNT 334 (459)
T ss_pred CCcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeee----ccccccccccCCCCeEEEEecCc
Confidence 5789999999987654 1677788888821 1111100 000 0112234588999999999
Q ss_pred cC----hHHHHHhcccc
Q 008723 465 VD----LEKTISERRQD 477 (556)
Q Consensus 465 ~d----l~~~i~~rr~~ 477 (556)
.| +.+.+.+|||.
T Consensus 335 ~Drs~~~lD~AlrRRF~ 351 (459)
T PRK11331 335 ADRSLAVVDYALRRRFS 351 (459)
T ss_pred cccchhhccHHHHhhhh
Confidence 98 44555556764
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.95 E-value=3.5e-09 Score=109.21 Aligned_cols=117 Identities=30% Similarity=0.336 Sum_probs=79.8
Q ss_pred Cc-EEEeCCCCChhHHHHHHHHHHhC------------------------CCeeeeccccccccCccccchHHHHHHHHH
Q 008723 326 SN-VLLMGPTGSGKTLLAKTLARHVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 326 ~~-vLL~GPpGTGKTtlAraLA~~l~------------------------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
.| +||+||||+|||++|.++|+.+. ..++++++++..... -....++++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~----i~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID----IIVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc----chHHHHHHHHH
Confidence 45 99999999999999999999986 366777776554221 11344555554
Q ss_pred hcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe
Q 008723 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (556)
Q Consensus 381 ~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~ 460 (556)
............|++|||+|.++.+ .+++|++.||. ...+.+||+
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe---------------------p~~~~~~il 144 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE---------------------PPKNTRFIL 144 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc---------------------CCCCeEEEE
Confidence 4433322345679999999999987 89999999983 344556666
Q ss_pred cCC-CcChHHHHHhcccccccccC
Q 008723 461 GGA-FVDLEKTISERRQDSSIGFG 483 (556)
Q Consensus 461 t~n-~~dl~~~i~~rr~~~~i~f~ 483 (556)
+++ ...+...+..|++ .+.|.
T Consensus 145 ~~n~~~~il~tI~SRc~--~i~f~ 166 (325)
T COG0470 145 ITNDPSKILPTIRSRCQ--RIRFK 166 (325)
T ss_pred EcCChhhccchhhhcce--eeecC
Confidence 555 4445556666655 34454
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.7e-08 Score=106.19 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=87.0
Q ss_pred HhhhccC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 271 LDKFVIG-QEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 271 Ld~~VvG-qe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
++. |+| |+.+++.|..++... .-+..+||+||+|+||+++|+++|+.+
T Consensus 4 ~~~-i~~~q~~~~~~L~~~~~~~------------------------------~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 4 WEQ-LTALQPVVVKMLQNSIAKN------------------------------RLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHH-HHhhHHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444 566 999999998887511 012457999999999999999999988
Q ss_pred CCCe--eeecc--------------ccccccCccccc-hHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 350 NVPF--VIADA--------------TTLTQAGYVGED-VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 350 ~~~f--v~i~~--------------s~l~~sgyvG~~-~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
...- -...| .++.-....|.. .-+.++++.+........+...|++|||+|.+..+
T Consensus 53 ~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~------- 125 (329)
T PRK08058 53 FCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS------- 125 (329)
T ss_pred CCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-------
Confidence 4321 00000 011000001111 02344454443332212235679999999999887
Q ss_pred ccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCCCcChHHHHHhcccccccccCChh
Q 008723 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
.+++||+.||+ ...+++||+ |.+...+..+++.|.. .+.|..+.
T Consensus 126 -------a~NaLLK~LEE---------------------Pp~~~~~Il~t~~~~~ll~TIrSRc~--~i~~~~~~ 170 (329)
T PRK08058 126 -------AANSLLKFLEE---------------------PSGGTTAILLTENKHQILPTILSRCQ--VVEFRPLP 170 (329)
T ss_pred -------HHHHHHHHhcC---------------------CCCCceEEEEeCChHhCcHHHHhhce--eeeCCCCC
Confidence 89999999993 112333443 4454556667776665 34454444
No 178
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.92 E-value=3.5e-09 Score=111.50 Aligned_cols=63 Identities=32% Similarity=0.532 Sum_probs=45.3
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC--C
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~--~ 351 (556)
-+|||.+|.++.-..+..- .. -...++.+||.||||||||.+|-++|++|| .
T Consensus 25 GlVGQ~~AReAagiiv~mI-----k~---------------------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~ 78 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMI-----KE---------------------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDV 78 (398)
T ss_dssp TEES-HHHHHHHHHHHHHH-----HT---------------------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS
T ss_pred cccChHHHHHHHHHHHHHH-----hc---------------------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 3799999999888777521 11 112358999999999999999999999996 6
Q ss_pred Ceeeecccccc
Q 008723 352 PFVIADATTLT 362 (556)
Q Consensus 352 ~fv~i~~s~l~ 362 (556)
||+.++++++.
T Consensus 79 PF~~isgSEiy 89 (398)
T PF06068_consen 79 PFVSISGSEIY 89 (398)
T ss_dssp -EEEEEGGGG-
T ss_pred CeeEcccceee
Confidence 89888888654
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=3.2e-08 Score=110.56 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=104.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-hhhhhhhc-cccccccc-CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAE-PKTAAAVD-NDDNVELE-KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s-~~~~~~~~-~~~~v~~~-~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
++|-+.+-+.+...|..--..+|.....+....+ ..-+.+.+ .......+ .+-+||+||||-||||||+.+|+..|+
T Consensus 273 LLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 273 LLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred HhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 5666777666665554332333332121111111 11112222 22222333 467889999999999999999999999
Q ss_pred CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh--
Q 008723 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 429 (556)
Q Consensus 352 ~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-- 429 (556)
..++|++++-... ......+..+.......-+..+|..|+|||||-.... .++.|+.++.
T Consensus 353 sVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~a~ 414 (877)
T KOG1969|consen 353 SVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVKAT 414 (877)
T ss_pred eEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHHhh
Confidence 9999999986632 2223344444433332223357889999999976543 7888998887
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHh-cccccccccCChh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE-RRQDSSIGFGAPV 486 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~-rr~~~~i~f~~p~ 486 (556)
+++..-+........+......-++.||-||-.-+.. +++. +.+-..|.|..|.
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaP---aLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAP---ALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred cchhhcCcccchhhhhhhccccccCCEEEEecCccch---hhhhcccceEEEEecCCC
Confidence 4333221111111111122234567777777433322 2222 2333455666554
No 180
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=2.4e-08 Score=114.31 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=54.1
Q ss_pred EEEeCCCCChhHHHHHHHHHHh----------CCCeeeeccccccccC---------c------cccchHHHHHHHHHhc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLAQA 382 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l----------~~~fv~i~~s~l~~sg---------y------vG~~~e~~l~~lf~~a 382 (556)
++|+|+||||||++++.+.+++ ...++.|+|..+.... + .|......+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999998776 1457899996543210 0 1111123344444432
Q ss_pred ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 383 ~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
... .....||+|||||.|... .+..|+.+++
T Consensus 864 ~k~--~r~v~IIILDEID~L~kK--------------~QDVLYnLFR 894 (1164)
T PTZ00112 864 KKD--NRNVSILIIDEIDYLITK--------------TQKVLFTLFD 894 (1164)
T ss_pred hcc--cccceEEEeehHhhhCcc--------------HHHHHHHHHH
Confidence 110 112359999999998765 4566777766
No 181
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.90 E-value=1.3e-08 Score=102.06 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+++|+||+|||||++++++++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998763
No 182
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.89 E-value=1.1e-08 Score=115.61 Aligned_cols=50 Identities=42% Similarity=0.560 Sum_probs=42.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|.+.|+||+++++.+..++.. ..+++|+||||||||++|+++++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------------------------~~~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------------------------KRNVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------------------------CCCEEEECCCCCCHHHHHHHHHHHc
Confidence 4555599999999999888751 2589999999999999999999998
Q ss_pred CCC
Q 008723 350 NVP 352 (556)
Q Consensus 350 ~~~ 352 (556)
+..
T Consensus 62 ~~~ 64 (608)
T TIGR00764 62 PDE 64 (608)
T ss_pred Cch
Confidence 653
No 183
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.89 E-value=1.1e-08 Score=110.65 Aligned_cols=146 Identities=21% Similarity=0.375 Sum_probs=103.3
Q ss_pred CCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHh
Q 008723 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 305 ~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
.+.+..+..+.+.+..++....+++++|++||||+++|++++... +.+|+.++|..+... ..-..+|..
T Consensus 142 ig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--------~~~~~lfg~ 213 (441)
T PRK10365 142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--------LLESELFGH 213 (441)
T ss_pred EecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--------HHHHHhcCC
Confidence 466777777778888888888999999999999999999999776 468999999865421 111122221
Q ss_pred c-----------ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCce
Q 008723 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSI 449 (556)
Q Consensus 382 a-----------~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~i 449 (556)
. .+.+..+.+++||||||+.|... +|..|+.+++. ....+... ..+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~--------~~~ 271 (441)
T PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSN--------QTI 271 (441)
T ss_pred CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCC--------cee
Confidence 1 12244567899999999999988 99999999983 32222111 111
Q ss_pred EEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 450 vid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
..++.+|++++ .++.+.+..++|+..++|..
T Consensus 272 ---~~~~rii~~t~-~~~~~~~~~~~~~~~l~~~l 302 (441)
T PRK10365 272 ---SVDVRLIAATH-RDLAAEVNAGRFRQDLYYRL 302 (441)
T ss_pred ---eeceEEEEeCC-CCHHHHHHcCCchHHHHHHh
Confidence 22456676665 47888888888887776643
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=7.6e-09 Score=116.68 Aligned_cols=116 Identities=24% Similarity=0.320 Sum_probs=76.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC--CeeeeccccccccCccccc-hHHHHH-HHHHhcccchhccCCeEEEEecccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGED-VESILY-KLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~--~fv~i~~s~l~~sgyvG~~-~e~~l~-~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
.+|||.|++|||||++|++|++.+.. +|+++.... .....+|.- .+..+. ..+....+.+..+++++||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV-TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 78999999999999999999998854 688888632 222233432 111110 1111123345567889999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
+.+. +|+.|+++|+...+.+...|.. .....++.+|+|.|.
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~--------~~~p~~f~lIAt~np 136 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGIS--------VVHPAKFALIATYDP 136 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCc--------eeecCceEEEEecCC
Confidence 9988 9999999999555544322211 122345777777764
No 185
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=1.9e-08 Score=107.24 Aligned_cols=141 Identities=23% Similarity=0.299 Sum_probs=85.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+...|+|||..|..|.....+ ..-.++||.|+.||||||++|+||..|.
T Consensus 15 pf~aivGqd~lk~aL~l~av~-------------------------------P~iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVD-------------------------------PQIGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred chhhhcCchHHHHHHhhhhcc-------------------------------cccceeEEecCCCccHHHHHHHHHHhCC
Confidence 344589999998877554321 1237899999999999999999999883
Q ss_pred CCeeeecc-------------ccccc-------------------------cC-cccc-chHHHHHH-HHHhcccchhcc
Q 008723 351 VPFVIADA-------------TTLTQ-------------------------AG-YVGE-DVESILYK-LLAQAEFNVEAA 389 (556)
Q Consensus 351 ~~fv~i~~-------------s~l~~-------------------------sg-yvG~-~~e~~l~~-lf~~a~~~l~~a 389 (556)
---+.+.| .++.. .+ .+|. +.++.++. .-...++.+..+
T Consensus 64 ~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A 143 (423)
T COG1239 64 EIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA 143 (423)
T ss_pred ccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc
Confidence 21111122 00000 00 2222 12222221 001123456778
Q ss_pred CCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEE-ecCceEEEecCCCc
Q 008723 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQM-DTKDILFICGGAFV 465 (556)
Q Consensus 390 ~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivi-d~rnii~I~t~n~~ 465 (556)
+.+|||+||++.|... +++.||..++.....+-.. ++.+ .--++++|.|.|..
T Consensus 144 nRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vere---------Gisi~hpa~fvligTmNPE 197 (423)
T COG1239 144 NRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVERE---------GISIRHPARFLLIGTMNPE 197 (423)
T ss_pred cCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeC---------ceeeccCccEEEEeecCcc
Confidence 9999999999988877 9999999999432222112 2222 22457888888863
No 186
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.87 E-value=1.3e-08 Score=100.84 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=52.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
..+++|+||+|||||++|+++++.+ +.+++.+++.++... +.. .....+|+|||+|.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~ 101 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVER 101 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhh
Confidence 3689999999999999999999876 556777777554310 100 11356999999998
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+... .+..|+.+|+
T Consensus 102 l~~~--------------~~~~L~~~~~ 115 (227)
T PRK08903 102 LDDA--------------QQIALFNLFN 115 (227)
T ss_pred cCch--------------HHHHHHHHHH
Confidence 7655 6777888876
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.87 E-value=1.8e-08 Score=95.56 Aligned_cols=135 Identities=26% Similarity=0.314 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 277 Gqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
||+++++.|..++... + -+..+||+||+|+||+++|+++|+.+...-...
T Consensus 1 gq~~~~~~L~~~~~~~--~----------------------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--R----------------------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred CcHHHHHHHHHHHHcC--C----------------------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 8899999998887521 0 124589999999999999999999884321110
Q ss_pred ---------------cccccc---ccCc-cccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCch
Q 008723 357 ---------------DATTLT---QAGY-VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 357 ---------------~~s~l~---~sgy-vG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~ 417 (556)
.-.++. ..+. .... .+.++++..............|++|||+|.|+.+
T Consensus 51 ~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~-i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------------ 117 (162)
T PF13177_consen 51 DPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK-IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------------ 117 (162)
T ss_dssp T--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS-HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH------------
T ss_pred CCCCCCHHHHHHHhccCcceEEEecccccchhh-HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH------------
Confidence 000111 0000 0011 3456666665544333356789999999999988
Q ss_pred HHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCCCcChHHHHHhcccc
Q 008723 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTISERRQD 477 (556)
Q Consensus 418 ~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~dl~~~i~~rr~~ 477 (556)
.+++||+.||+ ...+++||+ |.+...+.+++..|.+.
T Consensus 118 --a~NaLLK~LEe---------------------pp~~~~fiL~t~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 118 --AQNALLKTLEE---------------------PPENTYFILITNNPSKILPTIRSRCQV 155 (162)
T ss_dssp --HHHHHHHHHHS---------------------TTTTEEEEEEES-GGGS-HHHHTTSEE
T ss_pred --HHHHHHHHhcC---------------------CCCCEEEEEEECChHHChHHHHhhceE
Confidence 99999999994 223444444 55555677788777653
No 188
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.84 E-value=6.1e-09 Score=110.08 Aligned_cols=63 Identities=25% Similarity=0.289 Sum_probs=47.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++.|+|++++++.|...+..... .. ......++|.||||+||||+|++|++.++
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~-----g~--------------------~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ-----GL--------------------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh-----cC--------------------CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 443589999999998887753211 00 01235689999999999999999999996
Q ss_pred C-------Ceeeecc
Q 008723 351 V-------PFVIADA 358 (556)
Q Consensus 351 ~-------~fv~i~~ 358 (556)
. +++.+.+
T Consensus 104 ~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 104 EYSKTPEGRRYTFKW 118 (361)
T ss_pred hhcccccCceEEEEe
Confidence 5 7887776
No 189
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.84 E-value=3.2e-08 Score=103.12 Aligned_cols=62 Identities=34% Similarity=0.586 Sum_probs=48.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC--CC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--VP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~--~~ 352 (556)
+|||.+|.++--..+..- .. -...++.|||.||||||||.+|-+||++|| .|
T Consensus 41 ~VGQ~~AReAaGvIv~mi-----k~---------------------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 41 LVGQEEAREAAGVIVKMI-----KQ---------------------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred ccchHHHHHhhhHHHHHH-----Hh---------------------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 799999999876666411 11 112458999999999999999999999996 58
Q ss_pred eeeecccccc
Q 008723 353 FVIADATTLT 362 (556)
Q Consensus 353 fv~i~~s~l~ 362 (556)
|+.++++++-
T Consensus 95 F~~isgsEiY 104 (450)
T COG1224 95 FVAISGSEIY 104 (450)
T ss_pred ceeeccceee
Confidence 9888888643
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=2.6e-08 Score=87.40 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=52.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC---eeeeccccccccC------------ccccchHHHHHHHHHhcccchhccC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAG------------YVGEDVESILYKLLAQAEFNVEAAQ 390 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~---fv~i~~s~l~~sg------------yvG~~~e~~l~~lf~~a~~~l~~a~ 390 (556)
.+++|+||||||||++++.+|..+... ++.+++....... ............++..+... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL----K 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc----C
Confidence 689999999999999999999999765 7777777543210 01112233344444444321 3
Q ss_pred CeEEEEecccccchh
Q 008723 391 QGMVYIDEVDKITKK 405 (556)
Q Consensus 391 ~~VLfLDEID~l~~~ 405 (556)
..+|||||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999998776
No 191
>PRK08727 hypothetical protein; Validated
Probab=98.78 E-value=6.7e-08 Score=96.78 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=41.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
..++|+|++|||||+++++++..+ +...+.+++.++. ..+...++... +..+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l~------~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEALE------GRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHHh------cCCEEEEeCcccc
Confidence 459999999999999999998776 3333444443322 11122222211 3359999999987
Q ss_pred chh
Q 008723 403 TKK 405 (556)
Q Consensus 403 ~~~ 405 (556)
...
T Consensus 106 ~~~ 108 (233)
T PRK08727 106 AGQ 108 (233)
T ss_pred cCC
Confidence 654
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=8.2e-08 Score=101.08 Aligned_cols=121 Identities=22% Similarity=0.274 Sum_probs=76.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC------------------------eeeeccccccccCccccchHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLA 380 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~------------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~ 380 (556)
+..+||+||+|+|||++|+.+|+.+.+. ++.+....- ...++ -+.++++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~ 96 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVS 96 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHH
Confidence 3569999999999999999999998542 111111000 00111 245666655
Q ss_pred hcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe
Q 008723 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (556)
Q Consensus 381 ~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~ 460 (556)
............|++|||+|+|... .++.||+.||+ ...+++||+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL 141 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLL 141 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEE
Confidence 5443333446679999999999987 89999999994 112334444
Q ss_pred -cCCCcChHHHHHhcccccccccCChhh
Q 008723 461 -GGAFVDLEKTISERRQDSSIGFGAPVR 487 (556)
Q Consensus 461 -t~n~~dl~~~i~~rr~~~~i~f~~p~~ 487 (556)
|.+...+..+++.|+.. +.|..+..
T Consensus 142 ~t~~~~~ll~TI~SRc~~--~~~~~~~~ 167 (328)
T PRK05707 142 ISHQPSRLLPTIKSRCQQ--QACPLPSN 167 (328)
T ss_pred EECChhhCcHHHHhhcee--eeCCCcCH
Confidence 44444566677776654 55655543
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.5e-08 Score=110.03 Aligned_cols=125 Identities=26% Similarity=0.328 Sum_probs=88.4
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
+.......||. |+|.++.++.+.+.|.++ .+.+-+|+|+||+|||.++
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~RR-------------------------------~KNNPvLiGEpGVGKTAIv 208 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSRR-------------------------------TKNNPVLVGEPGVGKTAIV 208 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhcc-------------------------------CCCCCeEecCCCCCHHHHH
Confidence 33444555665 899999999998888522 2478899999999999999
Q ss_pred HHHHHHh----------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccc
Q 008723 343 KTLARHV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (556)
Q Consensus 343 raLA~~l----------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~ 411 (556)
..||... +..++.++...+. ..+|.|+- |+.++.+++... ...+.||||||||.+...-... .
T Consensus 209 EGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev~----~~~~vILFIDEiHtiVGAG~~~-G 282 (786)
T COG0542 209 EGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEVE----KSKNVILFIDEIHTIVGAGATE-G 282 (786)
T ss_pred HHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHHh----cCCCeEEEEechhhhcCCCccc-c
Confidence 9999766 4467777777665 34688988 777878876654 2347899999999986652211 1
Q ss_pred cccCchHHHHHHHHHHHh
Q 008723 412 SRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 412 ~~~~s~~~v~~~LL~~LE 429 (556)
+ .. ++-+.|-.+|.
T Consensus 283 ~-a~---DAaNiLKPaLA 296 (786)
T COG0542 283 G-AM---DAANLLKPALA 296 (786)
T ss_pred c-cc---chhhhhHHHHh
Confidence 1 11 15566666665
No 194
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=3.8e-07 Score=102.44 Aligned_cols=85 Identities=12% Similarity=0.281 Sum_probs=52.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
..++|+|++|+|||.|+++|++++ +..++.+++.++... ++..-....+ ..|... + ....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~~~~~-~~f~~~---y--~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIRDGKG-DSFRRR---Y--REMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHhccH-HHHHHH---h--hcCCEEEEehhc
Confidence 459999999999999999999877 346677777665521 2111000001 112111 1 134699999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+..+. ..+..|+.+++
T Consensus 388 ~l~gke------------~tqeeLF~l~N 404 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFN 404 (617)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 886542 14566777766
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.68 E-value=5.1e-08 Score=106.65 Aligned_cols=85 Identities=16% Similarity=0.324 Sum_probs=52.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+||+|||||+|++++++++ +..++.+++.++... +...-......++... + ....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~~----~--~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNTMEEFKEK----Y--RSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCcHHHHHHH----H--hcCCEEEEehhh
Confidence 569999999999999999999987 345677777665421 1111000001111111 1 134599999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+.... ..++.|+.+++
T Consensus 222 ~l~~~~------------~~~~~l~~~~n 238 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFN 238 (450)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 876542 14566666665
No 196
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.65 E-value=1.1e-07 Score=107.67 Aligned_cols=47 Identities=38% Similarity=0.610 Sum_probs=39.3
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+-+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.+.
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~---------------------------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQ---------------------------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHh---------------------------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 333489999999999887752 25799999999999999999998774
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.7e-07 Score=97.51 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=50.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC-----eeeecccccccc--------------CccccchHHHHHHHHHhcccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-----FVIADATTLTQA--------------GYVGEDVESILYKLLAQAEFN 385 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~-----fv~i~~s~l~~s--------------gyvG~~~e~~l~~lf~~a~~~ 385 (556)
+.+++++|+||||||.+++.+++++... ++.|||...... -..|....+....+.+....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~- 120 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK- 120 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh-
Confidence 3579999999999999999999998443 889999865432 00111211222222221111
Q ss_pred hhccCCeEEEEecccccchh
Q 008723 386 VEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 386 l~~a~~~VLfLDEID~l~~~ 405 (556)
....-||+|||+|.|...
T Consensus 121 --~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 121 --KGKTVIVILDEVDALVDK 138 (366)
T ss_pred --cCCeEEEEEcchhhhccc
Confidence 124568999999999876
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=98.62 E-value=2e-07 Score=108.20 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=61.2
Q ss_pred cCCcEEEeC--CCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccc--hhccCCeEE
Q 008723 324 EKSNVLLMG--PTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGMV 394 (556)
Q Consensus 324 ~~~~vLL~G--PpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~--l~~a~~~VL 394 (556)
|+-+-+..| |.+.||||+|++||+.+ +.+++++++++... ...+++++...... +......|+
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 445566778 99999999999999998 45799999987542 22444444332111 111234799
Q ss_pred EEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 395 fLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
||||+|.|+.. .|++|++.||
T Consensus 635 IIDEaD~Lt~~--------------AQnALLk~lE 655 (846)
T PRK04132 635 FLDEADALTQD--------------AQQALRRTME 655 (846)
T ss_pred EEECcccCCHH--------------HHHHHHHHhh
Confidence 99999999887 8999999999
No 199
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=1.5e-07 Score=93.95 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=45.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
..++|+||||||||++++++|+++ +.....+...... ....++++.. .+..+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------YFSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------hhhHHHHhhc------ccCCEEEEeChhhh
Confidence 458999999999999999999886 2233333332111 0111222211 13459999999987
Q ss_pred chhhhcccccccCchHHHHHHHHHHHh
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
..... .+..|+.+++
T Consensus 104 ~~~~~------------~~~~l~~l~n 118 (229)
T PRK06893 104 IGNEE------------WELAIFDLFN 118 (229)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 64411 3446777665
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=6.1e-07 Score=94.33 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=74.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe--eeeccc--------------cc--c---ccCccccchHHHHHHHHHhccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF--VIADAT--------------TL--T---QAGYVGEDVESILYKLLAQAEF 384 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f--v~i~~s--------------~l--~---~sgyvG~~~e~~l~~lf~~a~~ 384 (556)
..+||.||.|+||+++|+.+|+.+.+.- -.-.|. |+ . +..-++ .+.++++.+....
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~---id~iR~l~~~~~~ 101 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG---VDQVREINEKVSQ 101 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC---HHHHHHHHHHHhh
Confidence 5688999999999999999999885421 001111 01 0 001112 2345555554443
Q ss_pred chhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCC
Q 008723 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGA 463 (556)
Q Consensus 385 ~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n 463 (556)
........|++||++|+|+.. ..|+||+.||+ ...+++||+ |.+
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~t~~ 146 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQADL 146 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEECC
Confidence 333345679999999999987 89999999994 222334444 445
Q ss_pred CcChHHHHHhcccccccccCChh
Q 008723 464 FVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 464 ~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
...+..+++.|+.. +.|..+.
T Consensus 147 ~~~llpTI~SRC~~--~~~~~~~ 167 (325)
T PRK06871 147 SAALLPTIYSRCQT--WLIHPPE 167 (325)
T ss_pred hHhCchHHHhhceE--EeCCCCC
Confidence 55666677776653 3444443
No 201
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.60 E-value=1.7e-07 Score=105.49 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=70.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC--CeeeeccccccccCcccc-chHHHHHHHH-HhcccchhccCCeEEEEecccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGE-DVESILYKLL-AQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~--~fv~i~~s~l~~sgyvG~-~~e~~l~~lf-~~a~~~l~~a~~~VLfLDEID~ 401 (556)
.+|+|.|+.||+||+++++++..+.. ||+.+..+...+ ..+|. +.+..++.-- ....+.+..++++||||||++.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~-~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADD-RLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHH-HccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 68999999999999999999999854 787665553322 24443 2222221111 1234556778999999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCC
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~ 438 (556)
+.+. +++.|++.||...+.|...
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~ 127 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERD 127 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEEC
Confidence 9888 9999999999767766433
No 202
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=5.7e-07 Score=94.32 Aligned_cols=124 Identities=26% Similarity=0.293 Sum_probs=74.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee--eccc-----------ccc----ccCcccc-----chHHHHHHHHHhcc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI--ADAT-----------TLT----QAGYVGE-----DVESILYKLLAQAE 383 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~--i~~s-----------~l~----~sgyvG~-----~~e~~l~~lf~~a~ 383 (556)
..+||+||+|+||+++|+++|+.+.+.--. -.|. |+. .....|. -.-+.++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 459999999999999999999888432100 0010 110 0000010 01234555555443
Q ss_pred cchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cC
Q 008723 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GG 462 (556)
Q Consensus 384 ~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~ 462 (556)
.........|++||++|+|+.. ..|+||+.||+ ...+++||+ +.
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~~~ 151 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE---------------------PSPGRYLWLISA 151 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC---------------------CCCCCeEEEEEC
Confidence 3322345579999999999887 89999999994 122333344 44
Q ss_pred CCcChHHHHHhcccccccccCChh
Q 008723 463 AFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 463 n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
+...+..+|+.|+.. +.|..|.
T Consensus 152 ~~~~lLpTIrSRCq~--i~~~~~~ 173 (319)
T PRK08769 152 QPARLPATIRSRCQR--LEFKLPP 173 (319)
T ss_pred ChhhCchHHHhhheE--eeCCCcC
Confidence 455667777777753 4455444
No 203
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.59 E-value=1.3e-07 Score=102.01 Aligned_cols=85 Identities=16% Similarity=0.335 Sum_probs=52.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+||+|+|||+|++++++++ +..++.+++.++... +...-....+...... + ....+|+||||+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~~----~--~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEEFKEK----Y--RSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHHHHHH----H--HhCCEEEEehhh
Confidence 568999999999999999999887 456777777665421 1110000000011110 1 123599999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+.... ..+..|+.+++
T Consensus 210 ~l~~~~------------~~~~~l~~~~n 226 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFN 226 (405)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 876541 14566777665
No 204
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.56 E-value=1.5e-07 Score=96.01 Aligned_cols=139 Identities=24% Similarity=0.411 Sum_probs=93.8
Q ss_pred ccccccc-cCCcEEEeCCCCChhHHHHHHHHH------HhCCCeeeeccccccccCccccchHHHHHHHHHh--------
Q 008723 317 NDDNVEL-EKSNVLLMGPTGSGKTLLAKTLAR------HVNVPFVIADATTLTQAGYVGEDVESILYKLLAQ-------- 381 (556)
Q Consensus 317 ~~~~v~~-~~~~vLL~GPpGTGKTtlAraLA~------~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~-------- 381 (556)
.++.++. +..+|||.||+|.||+.+|+.|-+ .+..+|++++|..+... + .+..+|..
T Consensus 199 qierva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd-----~---amsalfghvkgaftga 270 (531)
T COG4650 199 QIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD-----T---AMSALFGHVKGAFTGA 270 (531)
T ss_pred HHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc-----h---HHHHHHhhhccccccc
Confidence 3444433 357899999999999999998874 34669999999987632 1 22223322
Q ss_pred ---cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc-cCCCCcccCCCCCceEEecCceE
Q 008723 382 ---AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN-VPEKGARKHPRGDSIQMDTKDIL 457 (556)
Q Consensus 382 ---a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~-ipe~g~r~~~~~~~ivid~rnii 457 (556)
....+..+.+++||||||..|..+ -|..||+.+|++... ..++ ..+..|+.
T Consensus 271 ~~~r~gllrsadggmlfldeigelgad--------------eqamllkaieekrf~pfgsd--------r~v~sdfq--- 325 (531)
T COG4650 271 RESREGLLRSADGGMLFLDEIGELGAD--------------EQAMLLKAIEEKRFYPFGSD--------RQVSSDFQ--- 325 (531)
T ss_pred hhhhhhhhccCCCceEehHhhhhcCcc--------------HHHHHHHHHHhhccCCCCCc--------cccccchH---
Confidence 223456678999999999998877 788999999954432 2111 12222333
Q ss_pred EEecCCCcChHHHHHhcccccccc-------cCChhhhh
Q 008723 458 FICGGAFVDLEKTISERRQDSSIG-------FGAPVRAN 489 (556)
Q Consensus 458 ~I~t~n~~dl~~~i~~rr~~~~i~-------f~~p~~~~ 489 (556)
+++++..|+-..+.+++|+.+++ |.+|....
T Consensus 326 -liagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~q 363 (531)
T COG4650 326 -LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 (531)
T ss_pred -HhhhhHHHHHHHHhccchHHHHHHhhheeeeecccccc
Confidence 23667788999999999987664 56665443
No 205
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=4.7e-07 Score=102.60 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+||++.++.|...+...... ..+...++|+||||||||++++.+|+++
T Consensus 82 ~lde-l~~~~~ki~~l~~~l~~~~~~--------------------------~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHE-LAVHKKKIEEVETWLKAQVLE--------------------------NAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhcccc--------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444 899999999888877521000 0112449999999999999999999999
Q ss_pred CCCeee
Q 008723 350 NVPFVI 355 (556)
Q Consensus 350 ~~~fv~ 355 (556)
+..+++
T Consensus 135 ~~~~~E 140 (637)
T TIGR00602 135 GIQVQE 140 (637)
T ss_pred hhHHHH
Confidence 876554
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=7.4e-07 Score=94.30 Aligned_cols=127 Identities=22% Similarity=0.221 Sum_probs=78.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee---eecccccc---------ccC--cc-----------------------
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV---IADATTLT---------QAG--YV----------------------- 367 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv---~i~~s~l~---------~sg--yv----------------------- 367 (556)
+..+||+||+|+||+++|+.+|+.+.+..- ...|.... ..+ ++
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 467999999999999999999998855321 00111000 000 00
Q ss_pred -c--------cchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCC
Q 008723 368 -G--------EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (556)
Q Consensus 368 -G--------~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~ 438 (556)
| .-.-+.++++.+........+...|++||++|+|+.. ..|.||+.||+
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE-------- 158 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE-------- 158 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC--------
Confidence 0 0002345555554443333345679999999999988 89999999994
Q ss_pred CcccCCCCCceEEecCceEEEe-cCCCcChHHHHHhcccccccccCChhhh
Q 008723 439 GARKHPRGDSIQMDTKDILFIC-GGAFVDLEKTISERRQDSSIGFGAPVRA 488 (556)
Q Consensus 439 g~r~~~~~~~ivid~rnii~I~-t~n~~dl~~~i~~rr~~~~i~f~~p~~~ 488 (556)
...+++||+ |.+...+..++..|+. .+.|..+..+
T Consensus 159 -------------Pp~~t~fiL~t~~~~~LLpTI~SRcq--~i~~~~~~~~ 194 (342)
T PRK06964 159 -------------PPPGTVFLLVSARIDRLLPTILSRCR--QFPMTVPAPE 194 (342)
T ss_pred -------------CCcCcEEEEEECChhhCcHHHHhcCE--EEEecCCCHH
Confidence 122334444 4555567777777774 4556655433
No 207
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.55 E-value=1.7e-06 Score=86.47 Aligned_cols=172 Identities=22% Similarity=0.377 Sum_probs=110.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~ 351 (556)
++|-+..++.|.+...+. ..+ .+-.||||+|.-|||||+++||+..++ +.
T Consensus 62 l~Gvd~qk~~L~~NT~~F-----~~G----------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 62 LVGVDRQKEALVRNTEQF-----AEG----------------------LPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred HhCchHHHHHHHHHHHHH-----HcC----------------------CcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 799999999988776421 111 133799999999999999999999888 55
Q ss_pred CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc
Q 008723 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (556)
Q Consensus 352 ~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~ 431 (556)
.+++|+-.++..- ..++ ++++... +.=|||+|+.- +... +..--.|-.+|||.
T Consensus 115 rLVEV~k~dl~~L-------p~l~-~~Lr~~~------~kFIlFcDDLS-Fe~g------------d~~yK~LKs~LeG~ 167 (287)
T COG2607 115 RLVEVDKEDLATL-------PDLV-ELLRARP------EKFILFCDDLS-FEEG------------DDAYKALKSALEGG 167 (287)
T ss_pred eEEEEcHHHHhhH-------HHHH-HHHhcCC------ceEEEEecCCC-CCCC------------chHHHHHHHHhcCC
Confidence 7888888776632 2222 3333333 44599999865 2221 12566788889975
Q ss_pred ccccCCCCcccCCCCCceEEecCceEEEecCCCcChHH-HHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCch
Q 008723 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK-TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (556)
Q Consensus 432 ~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~-~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~ 510 (556)
+.. -..|++|.+|+|..-|.. .+.+ ...+. ..+-+.
T Consensus 168 ve~-----------------rP~NVl~YATSNRRHLl~e~~~d-----n~~~~---------------------~eih~~ 204 (287)
T COG2607 168 VEG-----------------RPANVLFYATSNRRHLLPEDMKD-----NEGST---------------------GEIHPS 204 (287)
T ss_pred ccc-----------------CCCeEEEEEecCCcccccHhhhh-----CCCcc---------------------cccChh
Confidence 443 234677777877643211 1111 11110 122223
Q ss_pred HHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhh
Q 008723 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (556)
Q Consensus 511 dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~ 545 (556)
+.++..+ .|-+||...+.|.+.+.++..+|+..
T Consensus 205 eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~ 237 (287)
T COG2607 205 EAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDH 237 (287)
T ss_pred HHHHHhh--chhhhcceeecccCCCHHHHHHHHHH
Confidence 3333323 56789999999999999999999863
No 208
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.9e-07 Score=101.81 Aligned_cols=178 Identities=13% Similarity=0.210 Sum_probs=112.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccch
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~ 404 (556)
...+||+|+||||||++.+++|.+++.++++++|.++... -...+ +..+...|.++... .++||||-..|-+.-
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a~~~----~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRARRC----SPAVLFLRNLDVLGI 504 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHHhhc----CceEEEEeccceeee
Confidence 3679999999999999999999999999999999998854 23333 66777788777644 889999999998874
Q ss_pred hhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 405 ~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
+..+ +.+ .+++..+..+|.- +.........+||++++..+-....-++.|...|.++.
T Consensus 505 d~dg---ged---~rl~~~i~~~ls~----------------e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 505 DQDG---GED---ARLLKVIRHLLSN----------------EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPA 562 (953)
T ss_pred cCCC---chh---HHHHHHHHHHHhc----------------ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCC
Confidence 4322 111 2244444444430 01112344567788776665444455567777888877
Q ss_pred hhhhhhccccchhHhHHHHHhhc-CchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhh
Q 008723 485 PVRANMRAGVTDAAVTSSLLESV-ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (556)
Q Consensus 485 p~~~~~~~~~~~~~~~~~l~~~l-~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~ 546 (556)
+..++. ..+++.. ....+.+..... ..+-..+.++..+|.++++..
T Consensus 563 lse~qR----------l~iLq~y~~~~~~n~~v~~k------~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 563 LSEEQR----------LEILQWYLNHLPLNQDVNLK------QLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred CCHHHH----------HHHHHHHHhccccchHHHHH------HHHHhcCCCCHHHHHHHhcCc
Confidence 765442 1122221 111111111111 233456688889988887765
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.8e-07 Score=101.85 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=104.4
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHhCC----CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEe
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l~~----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLD 397 (556)
.....+|||.||+|+|||.|++++++++.. .+..++|+.+.... -+...+.+..+|..+... +|+||+||
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~~----~PSiIvLD 501 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALWY----APSIIVLD 501 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHhh----CCcEEEEc
Confidence 345689999999999999999999998843 56688888776442 112234556666655433 89999999
Q ss_pred cccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHH-HHHhcc
Q 008723 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEK-TISERR 475 (556)
Q Consensus 398 EID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~-~i~~rr 475 (556)
++|.|.......+....+...+...+|.+++... .-+.+.+.||+++.... +.+ +...+.
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y------------------~~~~~~ia~Iat~qe~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIY------------------LKRNRKIAVIATGQELQTLNPLLVSPLL 563 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHH------------------HccCcEEEEEEechhhhhcChhhcCccc
Confidence 9999876322222222221122333333443310 11233467787766432 111 233445
Q ss_pred cccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcC-CCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHh
Q 008723 476 QDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYG-LIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALG 551 (556)
Q Consensus 476 ~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~-l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~ 551 (556)
|...+..+.|..++.+ .++..+-+..+.... -+-+| .-..-..+..-||+..+++.+....
T Consensus 564 Fq~~~~L~ap~~~~R~----------~IL~~~~s~~~~~~~~~dLd~-----ls~~TEGy~~~DL~ifVeRai~~a~ 625 (952)
T KOG0735|consen 564 FQIVIALPAPAVTRRK----------EILTTIFSKNLSDITMDDLDF-----LSVKTEGYLATDLVIFVERAIHEAF 625 (952)
T ss_pred eEEEEecCCcchhHHH----------HHHHHHHHhhhhhhhhHHHHH-----HHHhcCCccchhHHHHHHHHHHHHH
Confidence 5555556666544421 122221111110000 00111 2245567777788877777776655
No 210
>PRK05642 DNA replication initiation factor; Validated
Probab=98.52 E-value=3.9e-07 Score=91.37 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=50.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
.+++|+||+|||||.|++++++++ +...+.+++.++... . .. +.+.+. ...+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~-~~-~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-----G-PE-LLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-----h-HH-HHHhhh---------hCCEEEEechhhh
Confidence 578999999999999999999765 455666666655421 0 11 111121 1238999999977
Q ss_pred chhhhcccccccCchHHHHHHHHHHHh
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
..+.. .+..|+.+++
T Consensus 110 ~~~~~------------~~~~Lf~l~n 124 (234)
T PRK05642 110 AGKAD------------WEEALFHLFN 124 (234)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 54311 4566777776
No 211
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.48 E-value=1.1e-06 Score=89.72 Aligned_cols=59 Identities=32% Similarity=0.527 Sum_probs=42.8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC--CC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--VP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~--~~ 352 (556)
++||+.|.++--..+..- +.-...++.+||.||||||||.+|-++++++| .|
T Consensus 40 ~vGQ~~AReAagiivdli--------------------------k~KkmaGravLlaGppgtGKTAlAlaisqELG~kvP 93 (456)
T KOG1942|consen 40 FVGQENAREAAGIIVDLI--------------------------KSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVP 93 (456)
T ss_pred cccchhhhhhhhHHHHHH--------------------------HhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCC
Confidence 799999988765555411 01112458899999999999999999999995 46
Q ss_pred eeeeccc
Q 008723 353 FVIADAT 359 (556)
Q Consensus 353 fv~i~~s 359 (556)
|..+..+
T Consensus 94 FcpmvgS 100 (456)
T KOG1942|consen 94 FCPMVGS 100 (456)
T ss_pred cccccch
Confidence 6544444
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.48 E-value=4.6e-07 Score=90.09 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=52.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+||+|+|||.|.+++++++ +..++.+++.++... +...-....+..+.... ..-.+|+||+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~------~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRL------RSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHH------CTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhh------hcCCEEEEecch
Confidence 469999999999999999999876 445667777655421 10000000011111111 133599999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+..+. ..+..|+.+++
T Consensus 108 ~l~~~~------------~~q~~lf~l~n 124 (219)
T PF00308_consen 108 FLAGKQ------------RTQEELFHLFN 124 (219)
T ss_dssp GGTTHH------------HHHHHHHHHHH
T ss_pred hhcCch------------HHHHHHHHHHH
Confidence 887652 26778888877
No 213
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.47 E-value=4.7e-07 Score=100.79 Aligned_cols=98 Identities=21% Similarity=0.356 Sum_probs=62.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee-eecccccccc-CccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV-IADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv-~i~~s~l~~s-gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
..||||+|.||||||-+.+.+++.+-.-.+ .=..+.-+.. -|+-.+.+ .+.+ ......+-.+.++|..|||+|+|
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~d--tkql-VLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPD--TRQL-VLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCc--ccee-eeecCcEEEcCCceEEchhhhhh
Confidence 489999999999999999999998843222 1111110000 01111100 0011 11122334567899999999999
Q ss_pred chhhhcccccccCchHHHHHHHHHHHhccccccCCCC
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKG 439 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g 439 (556)
..+ .++.|++.||...++|+..|
T Consensus 539 ~dS--------------trSvLhEvMEQQTvSIAKAG 561 (804)
T KOG0478|consen 539 SDS--------------TRSVLHEVMEQQTLSIAKAG 561 (804)
T ss_pred hHH--------------HHHHHHHHHHHhhhhHhhcc
Confidence 877 88999999998888886554
No 214
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.44 E-value=6.6e-06 Score=83.02 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|+||+|+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999999885
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.4e-06 Score=90.31 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=77.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC--eeeecccc--------------cc---cc---CccccchHHHHHHHHHhcc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATT--------------LT---QA---GYVGEDVESILYKLLAQAE 383 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~--fv~i~~s~--------------l~---~s---gyvG~~~e~~l~~lf~~a~ 383 (556)
..+||+||+|+||+++|+++|+.+.+. --...|.. +. .. ..++ .+.++++.+...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG---VDAVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC---HHHHHHHHHHHh
Confidence 578899999999999999999988431 00001111 00 00 0111 234555555443
Q ss_pred cchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cC
Q 008723 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GG 462 (556)
Q Consensus 384 ~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~ 462 (556)
.........|++||++|+|+.. ..|+||+.||+ ...+.+||+ |.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t~ 146 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE---------------------PPENTWFFLACR 146 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEEC
Confidence 3333346679999999999988 89999999994 122334444 55
Q ss_pred CCcChHHHHHhcccccccccCChh
Q 008723 463 AFVDLEKTISERRQDSSIGFGAPV 486 (556)
Q Consensus 463 n~~dl~~~i~~rr~~~~i~f~~p~ 486 (556)
+...+..+++.|+.. +.|..+.
T Consensus 147 ~~~~lLpTIrSRCq~--~~~~~~~ 168 (334)
T PRK07993 147 EPARLLATLRSRCRL--HYLAPPP 168 (334)
T ss_pred ChhhChHHHHhcccc--ccCCCCC
Confidence 556677888888773 5666554
No 216
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=5.1e-06 Score=87.21 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=76.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC-----------------------eeeeccccccccCccccchHHHHHHHHHhc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLAQA 382 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~-----------------------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a 382 (556)
..+||.||.|+||+++|+.+|+.+.+. |+.+....- .+.++ .+.++++.+..
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~---vdqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSIT---VEQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcCC---HHHHHHHHHHH
Confidence 569999999999999999999988431 111111000 00111 23445554443
Q ss_pred ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-c
Q 008723 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-G 461 (556)
Q Consensus 383 ~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t 461 (556)
..........|++||++|+|... ..|+||+.||+ ...+.+||+ |
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 33223345679999999999887 89999999994 223344444 5
Q ss_pred CCCcChHHHHHhcccccccccCChhh
Q 008723 462 GAFVDLEKTISERRQDSSIGFGAPVR 487 (556)
Q Consensus 462 ~n~~dl~~~i~~rr~~~~i~f~~p~~ 487 (556)
.+...+-.+++.|+.. +.|..|..
T Consensus 146 ~~~~~lLpTI~SRCq~--~~~~~~~~ 169 (319)
T PRK06090 146 HNQKRLLPTIVSRCQQ--WVVTPPST 169 (319)
T ss_pred CChhhChHHHHhccee--EeCCCCCH
Confidence 5556677888887763 45555543
No 217
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=1e-06 Score=96.35 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=44.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+||+|+|||+|++++++++ +..++.+++.++... +...-....+.+ |... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~-f~~~---~-~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNE-FREK---Y-RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHH-HHHH---H-HhcCCEEEEechh
Confidence 469999999999999999999886 345667777654421 110000000111 1110 0 0135699999999
Q ss_pred ccchh
Q 008723 401 KITKK 405 (556)
Q Consensus 401 ~l~~~ 405 (556)
.+...
T Consensus 205 ~l~~~ 209 (440)
T PRK14088 205 FLIGK 209 (440)
T ss_pred hhcCc
Confidence 87543
No 218
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=9e-07 Score=96.87 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=51.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
.+++|+||+|+|||+|++++++.+ +..++.+++.++... +...-..... ..|... .....+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l~~~~~-~~f~~~-----~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAIRSGEM-QRFRQF-----YRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHHhcchH-HHHHHH-----cccCCEEEEcchhhh
Confidence 579999999999999999999877 566777776554321 1000000000 112111 113459999999987
Q ss_pred chhhhcccccccCchHHHHHHHHHHHh
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.... ..++.|+.+++
T Consensus 215 ~~k~------------~~qeelf~l~N 229 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFN 229 (445)
T ss_pred cCCh------------hhHHHHHHHHH
Confidence 6431 14566666655
No 219
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.39 E-value=4e-08 Score=103.52 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=78.6
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+...+-..|+|.+.+|..|.-.+... ..+.. ....-.....||||+|.||||||.+.+.++
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~--------~~~~~-----------~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~ 78 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGG--------VEKND-----------PDGTRIRGNIHILLVGDPGTGKSQLLKYVA 78 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT----------SCCC-----------CT-TEE--S--EEEECSCHHCHHHHHHCCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhc--------ccccc-----------ccccccccccceeeccchhhhHHHHHHHHH
Confidence 44555556899999888775554311 00000 000012345899999999999999999887
Q ss_pred HHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHH
Q 008723 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (556)
Q Consensus 347 ~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~ 426 (556)
+.... -+.+++......+....-.......-+.-..+.+..+.++|++|||+|++..+ .++.|++
T Consensus 79 ~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~e 143 (331)
T PF00493_consen 79 KLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALHE 143 (331)
T ss_dssp CT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHHH
T ss_pred hhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHHH
Confidence 66533 23333332221211100000000000000112233467899999999999877 7899999
Q ss_pred HHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 427 ~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
.||...+.+...| -...+. .++-+++++|+.
T Consensus 144 aMEqq~isi~kag-------i~~~l~-ar~svlaa~NP~ 174 (331)
T PF00493_consen 144 AMEQQTISIAKAG-------IVTTLN-ARCSVLAAANPK 174 (331)
T ss_dssp HHHCSCEEECTSS-------SEEEEE----EEEEEE--T
T ss_pred HHHcCeeccchhh-------hccccc-chhhhHHHHhhh
Confidence 9997777774432 112233 345566676753
No 220
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3e-06 Score=89.18 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC-------------------------Ceeeecccccc-ccCc--cccchHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-------------------------PFVIADATTLT-QAGY--VGEDVESILY 376 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~-------------------------~fv~i~~s~l~-~sgy--vG~~~e~~l~ 376 (556)
+..+||+||+|+|||++|+.+|+.+.+ .|+.+....-. +.+. .... -+.++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHH
Confidence 356999999999999999999998843 12223221100 0000 0001 34566
Q ss_pred HHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCce
Q 008723 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (556)
Q Consensus 377 ~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rni 456 (556)
++.+............|++||+++.+... .++.|++.||.- ..++
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep---------------------~~~~ 144 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEP---------------------PPQV 144 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhC---------------------cCCC
Confidence 66655544333456679999999999988 899999999830 0112
Q ss_pred -EEEecCCCcChHHHHHhcccccccccCChhh
Q 008723 457 -LFICGGAFVDLEKTISERRQDSSIGFGAPVR 487 (556)
Q Consensus 457 -i~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~ 487 (556)
++++|.+...+..++..|+.. +.|..+..
T Consensus 145 ~~Ilvth~~~~ll~ti~SRc~~--~~~~~~~~ 174 (325)
T PRK08699 145 VFLLVSHAADKVLPTIKSRCRK--MVLPAPSH 174 (325)
T ss_pred EEEEEeCChHhChHHHHHHhhh--hcCCCCCH
Confidence 333444445566677776653 44554443
No 221
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.34 E-value=6.8e-07 Score=101.37 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+...+-..|.|.+.+|+.|.-.+.- ...+....... .....||||.|.|||+||.+-|.++
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfg--------Gv~k~~~~g~~-----------iRGDInILLvGDPgtaKSqlLk~v~ 340 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFG--------GVKKNLPDGTR-----------IRGDIHILLVGDPGTAKSQLLKYVA 340 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcC--------CCcccCCCCcc-----------cccceeEEEcCCCchhHHHHHHHHH
Confidence 3334444589999999988776641 11111111010 1235899999999999999999999
Q ss_pred HHhCCCee-eecccc---ccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 347 RHVNVPFV-IADATT---LTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 347 ~~l~~~fv-~i~~s~---l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
+.+....+ ...+++ ++.+ ...... ..+ +....+.+-.+.+||+.|||+|++... .+.
T Consensus 341 ~~aPr~vytsgkgss~~GLTAa---v~rd~~-tge-~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~ 401 (682)
T COG1241 341 KLAPRGVYTSGKGSSAAGLTAA---VVRDKV-TGE-WVLEAGALVLADGGVCCIDEFDKMNEE--------------DRV 401 (682)
T ss_pred hhCCceEEEccccccccCceeE---EEEccC-CCe-EEEeCCEEEEecCCEEEEEeccCCChH--------------HHH
Confidence 98854332 222221 1111 000000 000 111123344578999999999999877 789
Q ss_pred HHHHHHhccccccCCC
Q 008723 423 ALLKMLEGTIVNVPEK 438 (556)
Q Consensus 423 ~LL~~LEg~~v~ipe~ 438 (556)
+|.+.||...++|...
T Consensus 402 aihEaMEQQtIsIaKA 417 (682)
T COG1241 402 AIHEAMEQQTISIAKA 417 (682)
T ss_pred HHHHHHHhcEeeeccc
Confidence 9999999777776443
No 222
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-06 Score=91.72 Aligned_cols=93 Identities=30% Similarity=0.409 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccch---HHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV---ESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~---e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
...+||.||||+|||+||-.+|...+.||+.+-..+- .+|.++ ...+.+.|+.+.- ..-+||++|+|++
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAYk----S~lsiivvDdiEr 609 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAYK----SPLSIIVVDDIER 609 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhhc----CcceEEEEcchhh
Confidence 4679999999999999999999999999997765533 234442 2356677776642 2457999999998
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
|..- ..++-..|. .++++|+-+|.
T Consensus 610 LiD~---vpIGPRfSN-~vlQaL~VllK 633 (744)
T KOG0741|consen 610 LLDY---VPIGPRFSN-LVLQALLVLLK 633 (744)
T ss_pred hhcc---cccCchhhH-HHHHHHHHHhc
Confidence 8543 234443332 26667776664
No 223
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=2.7e-06 Score=93.36 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=51.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchH--HHHHHHHHhcccchhccCCeEEEEec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVE--SILYKLLAQAEFNVEAAQQGMVYIDE 398 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e--~~l~~lf~~a~~~l~~a~~~VLfLDE 398 (556)
.+++|+|++|+|||+|++++++++ +..++.+++.++... +...-.. ..+.+.... .....+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~-~~~~l~~~~~~~~~~~~~------~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK-AVDILQKTHKEIEQFKNE------ICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHHhhhHHHHHHHH------hccCCEEEEec
Confidence 569999999999999999999866 345666777665421 1110000 111111111 11345999999
Q ss_pred ccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 399 VDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 399 ID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
|+.+..+. ..++.|+.+++
T Consensus 215 iq~l~~k~------------~~~e~lf~l~N 233 (450)
T PRK14087 215 VQFLSYKE------------KTNEIFFTIFN 233 (450)
T ss_pred cccccCCH------------HHHHHHHHHHH
Confidence 99876431 15666777665
No 224
>PRK06620 hypothetical protein; Validated
Probab=98.30 E-value=4.2e-06 Score=82.99 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=23.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
..++|+||+|||||++++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56999999999999999999988764
No 225
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.27 E-value=2e-06 Score=102.16 Aligned_cols=159 Identities=23% Similarity=0.260 Sum_probs=106.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccccc-Cccccch--HHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDV--ESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s-gyvG~~~--e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
-.+++||.|.||+|||.+..+||+..|..+++|+.++-++- +.+|.+. ++--.-.+..+++.-+...++-++|||++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhh
Confidence 35789999999999999999999999999999999853211 1222221 00000122333333344578899999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccc
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~ 479 (556)
..+.+ |++-|-..|| ...-.||+... ..--+.|+.+.+|-|+.+. +.
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~--------~f~~HpnfrVFAaqNPq~q------gg---- 1669 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDK--------TFDVHPNFRVFAAQNPQDQ------GG---- 1669 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccc--------eeeccCCeeeeeecCchhc------CC----
Confidence 65555 9999999999 44455665521 2223455666666554321 00
Q ss_pred cccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 480 i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
-.+++...|++||. +|.+..|+.+++..|+.....
T Consensus 1670 ---------------------------------GRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1670 ---------------------------------GRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ---------------------------------CcccCCHHHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 12347789999998 888999999999999876554
No 226
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.26 E-value=9e-07 Score=97.62 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=93.3
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+...+--.|.|++.+|.+|..++. .+..+..+.... .....||||+|.|||||+-+.|.++
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLf--------GGv~kn~~~khk-----------vRGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALF--------GGVPKNPGGKHK-----------VRGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHh--------cCCccCCCCCce-----------eccceeEEEecCCCccHHHHHHHHH
Confidence 444455558999999999988874 222232222211 1235799999999999999999999
Q ss_pred HHhCCCeeeecc-cccccc-CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHH
Q 008723 347 RHVNVPFVIADA-TTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (556)
Q Consensus 347 ~~l~~~fv~i~~-s~l~~s-gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~L 424 (556)
+.....++..-- ++.+.- -|+-.+ -+..-.....+.+-.+.++|.+|||+|++... =...+
T Consensus 504 K~s~RAV~tTGqGASavGLTa~v~Kd---PvtrEWTLEaGALVLADkGvClIDEFDKMndq--------------DRtSI 566 (854)
T KOG0477|consen 504 KTSPRAVFTTGQGASAVGLTAYVRKD---PVTREWTLEAGALVLADKGVCLIDEFDKMNDQ--------------DRTSI 566 (854)
T ss_pred hcCcceeEeccCCccccceeEEEeeC---CccceeeeccCeEEEccCceEEeehhhhhccc--------------ccchH
Confidence 887655442111 110000 011000 00000000112334568899999999999765 23456
Q ss_pred HHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccC
Q 008723 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (556)
Q Consensus 425 L~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~ 483 (556)
-+.||..-+.|...|- +..-.-.+.+|+|+|+.. +|-+..+.|.
T Consensus 567 HEAMEQQSISISKAGI--------VtsLqArctvIAAanPig-------GRY~~s~tFa 610 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGI--------VTSLQARCTVIAAANPIG-------GRYNPSLTFA 610 (854)
T ss_pred HHHHHhcchhhhhhhH--------HHHHHhhhhhheecCCCC-------CccCCccchh
Confidence 7778866565543321 111223356677777642 4555555554
No 227
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=4.6e-06 Score=83.41 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=24.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
..++|+||+|+|||+|++++++..+..|
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~ 72 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL 72 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 4599999999999999999998765443
No 228
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.23 E-value=4.4e-06 Score=99.43 Aligned_cols=116 Identities=26% Similarity=0.344 Sum_probs=80.3
Q ss_pred cccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccccc-Ccccc----chH------HHHHHHHHhcccch
Q 008723 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGE----DVE------SILYKLLAQAEFNV 386 (556)
Q Consensus 318 ~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s-gyvG~----~~e------~~l~~lf~~a~~~l 386 (556)
.+.......++||.||+-+|||.+.+.+|++.+..|++|+-.+.++. .|+|. +.. ..+-+++
T Consensus 881 ~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl------- 953 (4600)
T COG5271 881 MRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL------- 953 (4600)
T ss_pred HHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH-------
Confidence 34444456899999999999999999999999999999998865432 24332 211 1111111
Q ss_pred hccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCce
Q 008723 387 EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (556)
Q Consensus 387 ~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rni 456 (556)
..+--|+|||.+....+ |+++|-++|| .+...||+......++.+.....|.|.
T Consensus 954 --R~GyWIVLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNp 1008 (4600)
T COG5271 954 --RRGYWIVLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNP 1008 (4600)
T ss_pred --hcCcEEEeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCC
Confidence 24558999999966555 9999999999 778888888654444444444444433
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.22 E-value=3.7e-06 Score=86.98 Aligned_cols=109 Identities=28% Similarity=0.277 Sum_probs=70.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |++|++....+.+.... ..-.|+|++||||||||+...+.|+.+
T Consensus 39 ~l~d-v~~~~ei~st~~~~~~~-------------------------------~~lPh~L~YgPPGtGktsti~a~a~~l 86 (360)
T KOG0990|consen 39 FLGI-VIKQEPIWSTENRYSGM-------------------------------PGLPHLLFYGPPGTGKTSTILANARDF 86 (360)
T ss_pred hhhh-HhcCCchhhHHHHhccC-------------------------------CCCCcccccCCCCCCCCCchhhhhhhh
Confidence 3444 78898888877765421 012599999999999999999999988
Q ss_pred CCC------eeeeccccccccCccccchHHHHHHHHHhcc--cchhc-cCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 350 NVP------FVIADATTLTQAGYVGEDVESILYKLLAQAE--FNVEA-AQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 350 ~~~------fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~--~~l~~-a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
-.+ ..++++++- .|.+..+.-...|.... ..+.. +....++|||+|.++.+ +
T Consensus 87 y~~~~~~~m~lelnaSd~-----rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~--------------A 147 (360)
T KOG0990|consen 87 YSPHPTTSMLLELNASDD-----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD--------------A 147 (360)
T ss_pred cCCCCchhHHHHhhccCc-----cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH--------------H
Confidence 553 123333332 23332222223333322 11111 35679999999999887 9
Q ss_pred HHHHHHHHh
Q 008723 421 QQALLKMLE 429 (556)
Q Consensus 421 ~~~LL~~LE 429 (556)
|++|.+.++
T Consensus 148 QnALRRvie 156 (360)
T KOG0990|consen 148 QNALRRVIE 156 (360)
T ss_pred HHHHHHHHH
Confidence 999999877
No 230
>PRK08116 hypothetical protein; Validated
Probab=98.22 E-value=6.5e-06 Score=84.39 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=53.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---CccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
.+++|+|++|||||+||.+||+.+ +.+++.++..++... .|.... .....++++.. ....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~l------~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRSL------VNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHHh------cCCCEEEEecc
Confidence 469999999999999999999987 567777777665421 011100 00011111111 13359999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
...... +..+..|+.+|+.
T Consensus 188 g~e~~t------------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHH
Confidence 632111 1267888888884
No 231
>PRK12377 putative replication protein; Provisional
Probab=98.20 E-value=4.1e-06 Score=84.98 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=52.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---CccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
.+++|+||||||||+||.+||+.+ +..++.++..++... .|.... ...+++... ....+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l------~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQEL------CKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHh------cCCCEEEEcCC
Confidence 689999999999999999999988 455666666655431 010000 001111111 24469999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
...... +..+..|..+++.
T Consensus 173 g~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 173 GIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCC------------HHHHHHHHHHHHH
Confidence 754322 1167788999884
No 232
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.20 E-value=6.3e-06 Score=91.44 Aligned_cols=136 Identities=23% Similarity=0.332 Sum_probs=81.7
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
|...|-..|.|.+.+|.-|.-.+. .+.++..+ .........||+|+|.||||||-+.++.+
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~Lf--------GGv~K~a~-----------eg~~lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLF--------GGVHKSAG-----------EGTSLRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHh--------CCccccCC-----------CCccccCCceEEEeCCCCccHHHHHHHHh
Confidence 444444558999999887766653 22222111 01112345899999999999999999999
Q ss_pred HHhCCCeeeeccccccccCc---cccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHH
Q 008723 347 RHVNVPFVIADATTLTQAGY---VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (556)
Q Consensus 347 ~~l~~~fv~i~~s~l~~sgy---vG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~ 423 (556)
..+-...+ +.+.....+|. +-.+.+. .-|.-..+.+-.+.++|..|||+|++..+ -|.+
T Consensus 400 ~fsPR~vY-tsGkaSSaAGLTaaVvkD~es---gdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvA 461 (764)
T KOG0480|consen 400 AFSPRSVY-TSGKASSAAGLTAAVVKDEES---GDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVA 461 (764)
T ss_pred ccCCcceE-ecCcccccccceEEEEecCCC---CceeeecCcEEEccCceEEechhcccChH--------------hHHH
Confidence 88855433 22221111111 0011000 00111112233467899999999999875 5889
Q ss_pred HHHHHhccccccCCCC
Q 008723 424 LLKMLEGTIVNVPEKG 439 (556)
Q Consensus 424 LL~~LEg~~v~ipe~g 439 (556)
|++.||...++|...|
T Consensus 462 ihEAMEQQtISIaKAG 477 (764)
T KOG0480|consen 462 IHEAMEQQTISIAKAG 477 (764)
T ss_pred HHHHHHhheehheecc
Confidence 9999998888775443
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=2e-05 Score=80.35 Aligned_cols=151 Identities=23% Similarity=0.324 Sum_probs=84.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-C--CCeeeeccc---------------------cccccCccccchHHHHHHHHH-
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-N--VPFVIADAT---------------------TLTQAGYVGEDVESILYKLLA- 380 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-~--~~fv~i~~s---------------------~l~~sgyvG~~~e~~l~~lf~- 380 (556)
+|++++||+|+||-|.+.+|-+++ | .+-+.+... ++..++ .|..+.-.+.++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-aG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-AGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-cCcccHHHHHHHHHH
Confidence 799999999999999999999887 2 111111111 111111 23222333444443
Q ss_pred ---hcccchhcc-CCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCce
Q 008723 381 ---QAEFNVEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (556)
Q Consensus 381 ---~a~~~l~~a-~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rni 456 (556)
......... .-.|++|.|+|.|+.+ +|.+|.+.||- ...++
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEk---------------------Ys~~~ 158 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEK---------------------YSSNC 158 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHH---------------------HhcCc
Confidence 333333222 3369999999999988 99999999992 22333
Q ss_pred EEEec-CCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCC
Q 008723 457 LFICG-GAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP 526 (556)
Q Consensus 457 i~I~t-~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~ 526 (556)
.+|+. +....+.+.++.|++--. .+.|.. +++...+...++.+.+ .+..+++.||.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iR--vpaps~---------eeI~~vl~~v~~kE~l---~lp~~~l~rIa 215 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIR--VPAPSD---------EEITSVLSKVLKKEGL---QLPKELLKRIA 215 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEe--CCCCCH---------HHHHHHHHHHHHHhcc---cCcHHHHHHHH
Confidence 33332 223345666776666433 344442 3444555555544432 24456666653
No 234
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.17 E-value=2.6e-06 Score=76.24 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=27.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh--------CCCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV--------NVPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l--------~~~fv~i~~s~ 360 (556)
...++++||+|+|||++++.+++.+ ..+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3679999999999999999999887 56667666664
No 235
>PF13173 AAA_14: AAA domain
Probab=98.14 E-value=1.1e-05 Score=73.13 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=46.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC--CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~--~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
..++|.||.||||||+++.+++.+. ..++.+++.+....... . .+ +.+.+.... ..+..+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5689999999999999999998875 67778887765421100 0 00 112222211 1156799999999774
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.10 E-value=9e-06 Score=74.14 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
......+++.|++.|.||+-|++.|..+|..++.. . . + ..+-.+.|.|+||||||.
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---~--~-----p--------------~KpLVlSfHG~tGtGKn~ 68 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---P--N-----P--------------RKPLVLSFHGWTGTGKNF 68 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---C--C-----C--------------CCCEEEEeecCCCCcHHH
Confidence 35678899999999999999999999999755321 0 0 0 112456699999999999
Q ss_pred HHHHHHHHh
Q 008723 341 LAKTLARHV 349 (556)
Q Consensus 341 lAraLA~~l 349 (556)
+++.||+.+
T Consensus 69 v~~liA~~l 77 (127)
T PF06309_consen 69 VSRLIAEHL 77 (127)
T ss_pred HHHHHHHHH
Confidence 999999986
No 237
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=5.3e-05 Score=78.59 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=72.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee--eeccc------ccc---ccC--cc---ccc-hHHHHHHHHHhcccchhc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV--IADAT------TLT---QAG--YV---GED-VESILYKLLAQAEFNVEA 388 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv--~i~~s------~l~---~sg--yv---G~~-~e~~l~~lf~~a~~~l~~ 388 (556)
..+||+|| +||+++|+.+|+.+.+.-- ...|. .+. ..+ ++ |.. .-+.++++..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 56899996 6899999999988843210 00111 000 000 11 111 123555655544333333
Q ss_pred cCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEE-ecCCCcCh
Q 008723 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFI-CGGAFVDL 467 (556)
Q Consensus 389 a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I-~t~n~~dl 467 (556)
+...|++||++|+|+.. ..|.||+.||+ ...+.+|| +|.+...+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~~iL~t~~~~~l 147 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE---------------------PQSEIYIFLLTNDENKV 147 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEECChhhC
Confidence 45679999999999987 89999999994 12233344 45666678
Q ss_pred HHHHHhcccccccccC
Q 008723 468 EKTISERRQDSSIGFG 483 (556)
Q Consensus 468 ~~~i~~rr~~~~i~f~ 483 (556)
-.++..|+.. +.|.
T Consensus 148 LpTI~SRcq~--i~f~ 161 (290)
T PRK07276 148 LPTIKSRTQI--FHFP 161 (290)
T ss_pred chHHHHccee--eeCC
Confidence 8888887754 4444
No 238
>PRK08181 transposase; Validated
Probab=98.06 E-value=4.6e-06 Score=85.63 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=55.1
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
....+++|+||||||||.||.+|+.++ +..++.+++.++... +..........+.+... ....+|+|||+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~l------~~~dLLIIDDl 176 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAKL------DKFDLLILDDL 176 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHHH------hcCCEEEEecc
Confidence 356789999999999999999999766 556666666665532 10000000111112111 14459999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
..+.... ..++.|+++++
T Consensus 177 g~~~~~~------------~~~~~Lf~lin 194 (269)
T PRK08181 177 AYVTKDQ------------AETSVLFELIS 194 (269)
T ss_pred ccccCCH------------HHHHHHHHHHH
Confidence 9765431 15677888887
No 239
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.05 E-value=2.2e-05 Score=76.30 Aligned_cols=24 Identities=46% Similarity=0.762 Sum_probs=22.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|+||.|+|||++++.+.+.+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 689999999999999999999988
No 240
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=2.5e-05 Score=84.41 Aligned_cols=167 Identities=21% Similarity=0.315 Sum_probs=100.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---- 350 (556)
++|.+.....+.+.+..|.. . .....+.+.|-||||||.+...+-..+.
T Consensus 152 l~gRe~e~~~v~~F~~~hle------~---------------------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~ 204 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE------L---------------------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK 204 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh------c---------------------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcc
Confidence 78888888888888765421 1 1237899999999999998876654442
Q ss_pred C-CeeeeccccccccC-------------ccccchHHHHHHHHHhcccchhc-cCCeEEEEecccccchhhhcccccccC
Q 008723 351 V-PFVIADATTLTQAG-------------YVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKITKKAESLNISRDV 415 (556)
Q Consensus 351 ~-~fv~i~~s~l~~sg-------------yvG~~~e~~l~~lf~~a~~~l~~-a~~~VLfLDEID~l~~~r~~~~~~~~~ 415 (556)
. ..+.++|.++.... .++...+......|... +.. ...-+|++||+|.|...
T Consensus 205 ~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h---~~q~k~~~llVlDEmD~L~tr---------- 271 (529)
T KOG2227|consen 205 SPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH---TKQSKFMLLLVLDEMDHLITR---------- 271 (529)
T ss_pred cceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH---HhcccceEEEEechhhHHhhc----------
Confidence 1 34788998765431 01111111111122111 111 12458999999999855
Q ss_pred chHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccc
Q 008723 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (556)
Q Consensus 416 s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~ 495 (556)
-+..|+.+++ .| ...++.+++|.-+|..||.+-+
T Consensus 272 ----~~~vLy~lFe-----wp-------------~lp~sr~iLiGiANslDlTdR~------------------------ 305 (529)
T KOG2227|consen 272 ----SQTVLYTLFE-----WP-------------KLPNSRIILIGIANSLDLTDRF------------------------ 305 (529)
T ss_pred ----ccceeeeehh-----cc-------------cCCcceeeeeeehhhhhHHHHH------------------------
Confidence 3445666554 01 1245566666666666654332
Q ss_pred hhHhHHHHHhhcCchHHHHcCCCHHHhc---cCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 496 DAAVTSSLLESVESSDLIAYGLIPEFVG---RFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 496 ~~~~~~~l~~~l~~~dl~~~~l~Pell~---R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
.|.+-. --+.++.|.+|+.+|+++|+.+-...
T Consensus 306 ----------------------LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 306 ----------------------LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred ----------------------hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 233332 23568899999999999998765543
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.02 E-value=1.5e-05 Score=80.77 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=53.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCcccc--chHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~--~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+|++|||||++|.+||+++ +..++.++..++... +... ........+++.. ....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~-l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-MKDTFSNSETSEEQLLNDL------SNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH-HHHHHhhccccHHHHHHHh------ccCCEEEEeCCC
Confidence 589999999999999999999988 566777777665521 1000 0000011122111 134599999998
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
..... +...+.|.++++.
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~ 190 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDR 190 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 65422 1145677778874
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.02 E-value=2.2e-05 Score=80.74 Aligned_cols=140 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC-Cee--eeccccccccCccccchHHHHHHHHHhc-------ccchhccCCeEE
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-PFV--IADATTLTQAGYVGEDVESILYKLLAQA-------EFNVEAAQQGMV 394 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~-~fv--~i~~s~l~~sgyvG~~~e~~l~~lf~~a-------~~~l~~a~~~VL 394 (556)
+.++||+||+|||||++++.+-+.+.. .++ .++++.... ...+.++++.. .......+..|+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 478999999999999999887665532 222 333332221 22333332211 011223455799
Q ss_pred EEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHh
Q 008723 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (556)
Q Consensus 395 fLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~ 473 (556)
|||+++.-.++.-+ .....+.|.++|| |..... .+.-.....++.+|++.+...=...+..
T Consensus 105 fiDDlN~p~~d~yg--------tq~~iElLRQ~i~~~g~yd~----------~~~~~~~i~~i~~vaa~~p~~Gr~~is~ 166 (272)
T PF12775_consen 105 FIDDLNMPQPDKYG--------TQPPIELLRQLIDYGGFYDR----------KKLEWKSIEDIQFVAAMNPTGGRNPISP 166 (272)
T ss_dssp EEETTT-S---TTS----------HHHHHHHHHHHCSEEECT----------TTTEEEEECSEEEEEEESSTTT--SHHH
T ss_pred EecccCCCCCCCCC--------CcCHHHHHHHHHHhcCcccC----------CCcEEEEEeeeEEEEecCCCCCCCCCCh
Confidence 99999965444211 1126788889998 333321 1122456678888887665321122333
Q ss_pred ccccc--ccccCChhhhhh
Q 008723 474 RRQDS--SIGFGAPVRANM 490 (556)
Q Consensus 474 rr~~~--~i~f~~p~~~~~ 490 (556)
|..+. .+.++.|+.+.+
T Consensus 167 R~~r~f~i~~~~~p~~~sl 185 (272)
T PF12775_consen 167 RFLRHFNILNIPYPSDESL 185 (272)
T ss_dssp HHHTTEEEEE----TCCHH
T ss_pred HHhhheEEEEecCCChHHH
Confidence 33333 345555654443
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.02 E-value=3.2e-05 Score=86.93 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=77.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh----------CCCeeeecccccccc---------CccccchHH--HHHHHHHhccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQA---------GYVGEDVES--ILYKLLAQAEF 384 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l----------~~~fv~i~~s~l~~s---------gyvG~~~e~--~l~~lf~~a~~ 384 (556)
.-+.+.|-||||||.++..+-+.| ...|++|++..+... .+.|+.... .+..+-.....
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368899999999999999988866 347899999877642 122322111 11111111111
Q ss_pred chhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 385 ~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
.-.....+||+|||.|.|... -|..|..++| ........+++|+-+|.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fd------------------Wpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFD------------------WPTLKNSKLVVIAIANT 550 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhc------------------CCcCCCCceEEEEeccc
Confidence 112346789999999988765 5777777776 11123445667776777
Q ss_pred cChHHHHHhccccccccc
Q 008723 465 VDLEKTISERRQDSSIGF 482 (556)
Q Consensus 465 ~dl~~~i~~rr~~~~i~f 482 (556)
.|+.+-+...+....++|
T Consensus 551 mdlPEr~l~nrvsSRlg~ 568 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGL 568 (767)
T ss_pred ccCHHHHhccchhhhccc
Confidence 777766665555555554
No 244
>PRK06526 transposase; Provisional
Probab=98.01 E-value=5.7e-06 Score=84.25 Aligned_cols=87 Identities=23% Similarity=0.333 Sum_probs=51.9
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
...+++|+||||||||++|.+|+.++ +...+.+.+.++... +........+...+.. .....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHHH------hccCCEEEEcccc
Confidence 45789999999999999999999776 445444555444321 0000000011111111 1244699999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+.... ..++.|.++++
T Consensus 170 ~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH------------HHHHHHHHHHH
Confidence 765431 15667888876
No 245
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=6.9e-05 Score=77.68 Aligned_cols=114 Identities=21% Similarity=0.153 Sum_probs=72.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc--------cc---cccC---ccccchHHHHHHHHHhcccchhccCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT--------TL---TQAG---YVGEDVESILYKLLAQAEFNVEAAQQ 391 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s--------~l---~~sg---yvG~~~e~~l~~lf~~a~~~l~~a~~ 391 (556)
..+||+||.|+||+++|.++|+.+.+.-..-.|. |+ ...+ .++ -+.++++.+...........
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS---IETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc---HHHHHHHHHHHhhCccCCCc
Confidence 5789999999999999999999885421000110 11 0000 111 23445555544333333456
Q ss_pred eEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCCCcChHHH
Q 008723 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVDLEKT 470 (556)
Q Consensus 392 ~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~dl~~~ 470 (556)
.|++||++|+|+.+ .+++||+.||+ ...+++||+ |.+...+..+
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE---------------------Pp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED---------------------PPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc---------------------CCCCeEEEEEeCChhhCcHH
Confidence 79999999999988 89999999994 222334444 5555667777
Q ss_pred HHhcccc
Q 008723 471 ISERRQD 477 (556)
Q Consensus 471 i~~rr~~ 477 (556)
+..|++.
T Consensus 142 I~SRcq~ 148 (290)
T PRK05917 142 IRSRSLS 148 (290)
T ss_pred HHhcceE
Confidence 7777664
No 246
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.93 E-value=4.2e-05 Score=67.43 Aligned_cols=23 Identities=43% Similarity=0.752 Sum_probs=20.9
Q ss_pred EEEeCCCCChhHHHHHHHHHHhC
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|.|+|+||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 247
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00016 Score=75.31 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=56.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC-------------eeeeccccccccCccccc-hHHHHHHHHHhcccch-hccC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP-------------FVIADATTLTQAGYVGED-VESILYKLLAQAEFNV-EAAQ 390 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~-------------fv~i~~s~l~~sgyvG~~-~e~~l~~lf~~a~~~l-~~a~ 390 (556)
..+||+|+.|.||+++|+.+++.+.+. +..++. .|.. ..+.++.+.+...... ....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~--------~g~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI--------FDKDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc--------CCCcCCHHHHHHHHHHhccCCcccCC
Confidence 567899999999999999999987321 111110 0111 1234556665554332 2246
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
..|++||++|++... .++.||+.||.
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 789999999999877 89999999994
No 248
>PF05729 NACHT: NACHT domain
Probab=97.90 E-value=0.00016 Score=66.54 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.++|.|++|+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999999777
No 249
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.89 E-value=0.00012 Score=75.34 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=45.7
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC--
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV-- 351 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~-- 351 (556)
-.+||-+|.++.-..+..- .. -....+.+|+.|+||||||.+|-.+++.+|.
T Consensus 41 GmVGQ~~AR~Aagvi~kmi-----~e---------------------gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~t 94 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILKMI-----RE---------------------GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDT 94 (454)
T ss_pred cchhhHHHHHHhHHHHHHH-----Hc---------------------CcccceEEEEecCCCCCceeeeeehhhhhCCCC
Confidence 3799998888776655411 11 1113478999999999999999999999964
Q ss_pred Ceeeeccccc
Q 008723 352 PFVIADATTL 361 (556)
Q Consensus 352 ~fv~i~~s~l 361 (556)
||..+.++++
T Consensus 95 pF~~i~gSEI 104 (454)
T KOG2680|consen 95 PFTSISGSEI 104 (454)
T ss_pred ceeeeeccee
Confidence 7877777654
No 250
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.87 E-value=0.00023 Score=79.51 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=27.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.-+||+||+||||||+++.||++++..+.+-
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4688999999999999999999998877653
No 251
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=2.2e-05 Score=77.57 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=73.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc------cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s------~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
..|.|.||+|+||+|+|+.||+.++.+|+..-.. ..+..+..-.+ +..+.+++......+.. .--+|++..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d-~~~~~~l~~~~~i~f~~--~~~v~l~ge 81 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDD-EDALVALAKELDISFVN--DDRVFLNGE 81 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCcc-HHHHHHHHHhCCceecc--cceEEECCc
Confidence 4688999999999999999999999887743333 11112222223 55566666655544322 145778877
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCC-CceEEecCce
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG-DSIQMDTKDI 456 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~-~~ivid~rni 456 (556)
| ++...++.+++..+|.-.+...+.+.|-..+..+ ... .++++|+++|
T Consensus 82 d-vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~--------a~~~~~~V~dGRDi 130 (222)
T COG0283 82 D-VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAF--------AKNGPGIVADGRDI 130 (222)
T ss_pred h-hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHH--------HhcCCCEEEecCCC
Confidence 7 6666777777777776444444444443222222 222 5578888886
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.86 E-value=3.3e-05 Score=78.65 Aligned_cols=78 Identities=24% Similarity=0.380 Sum_probs=50.2
Q ss_pred ccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---Ccc-ccchHHHHHHHHHhcccchhcc
Q 008723 317 NDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYV-GEDVESILYKLLAQAEFNVEAA 389 (556)
Q Consensus 317 ~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyv-G~~~e~~l~~lf~~a~~~l~~a 389 (556)
..+.+. ...+++|+|+||||||.||-||++++ |...+.+...+++.. .+. |.. +..+...+.
T Consensus 98 ~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~l~--------- 166 (254)
T COG1484 98 LVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRELK--------- 166 (254)
T ss_pred HHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHHhh---------
Confidence 333444 66899999999999999999999888 566667777766532 011 111 222222222
Q ss_pred CCeEEEEecccccchh
Q 008723 390 QQGMVYIDEVDKITKK 405 (556)
Q Consensus 390 ~~~VLfLDEID~l~~~ 405 (556)
.--+|+|||+-.....
T Consensus 167 ~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 167 KVDLLIIDDIGYEPFS 182 (254)
T ss_pred cCCEEEEecccCccCC
Confidence 3349999999875443
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=97.84 E-value=3e-05 Score=79.15 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=53.4
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEec
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDE 398 (556)
.....+++|+||+|||||++|.+|+..+ +..+..+++.++... +........+...+... .....+|+|||
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDd 172 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDE 172 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEcc
Confidence 3446789999999999999999998664 555555555544411 10000000111222211 12456999999
Q ss_pred ccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 399 VDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 399 ID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..+.... ...+.|+++++
T Consensus 173 lg~~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 173 IGYLPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred cccCCCCh------------HHHHHHHHHHH
Confidence 98654431 14567888877
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.82 E-value=3.6e-05 Score=81.20 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=52.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCcccc--chHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~--~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+|++|||||+||.+||+++ +..++.+++.++... +... +........+... ..--+|+||++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~~l------~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNNDKELEEVYDLL------INCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHHHh------ccCCEEEEeccC
Confidence 689999999999999999999987 556666666665421 1000 0000000001111 123499999997
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
..... ...++.|+.+++.
T Consensus 257 ~e~~t------------~~~~~~Lf~iin~ 274 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLINK 274 (329)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 65322 1256778888873
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.82 E-value=5.9e-05 Score=75.85 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=51.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
..-.+.||+|||||++.|.||+.+|.+++.++|++..+ ...+..++.... ..++-+.|||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH
Confidence 56789999999999999999999999999999997663 344555554332 14679999999999876
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.81 E-value=0.00014 Score=75.51 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=41.4
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
.+.+..-..+.-||...|++.|...-... ...... ...++||+|+++.|||++++
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~Ll----~~P~~~---------------------Rmp~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEELL----EYPKRH---------------------RMPNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHHHH----hCCccc---------------------CCCceEEecCCCCcHHHHHH
Confidence 33455555566789999888877654311 011111 12789999999999999999
Q ss_pred HHHHHh
Q 008723 344 TLARHV 349 (556)
Q Consensus 344 aLA~~l 349 (556)
.+++..
T Consensus 80 rF~~~h 85 (302)
T PF05621_consen 80 RFRRLH 85 (302)
T ss_pred HHHHHC
Confidence 999765
No 257
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.79 E-value=2.9e-05 Score=74.89 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=50.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---CccccchHHHHHHHHHhcccchhccCCeEEEEec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDE 398 (556)
..+++|+|++|||||.+|.++++++ +...+.++..++... .+.....++.+..+ . ...+|+|||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-~---------~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL-K---------RVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-H---------TSSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc-c---------cccEecccc
Confidence 4789999999999999999999876 667777777765532 11111112222221 1 334999999
Q ss_pred ccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 399 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 399 ID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
+...... +...+.|.++|+.
T Consensus 117 lG~~~~~------------~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 117 LGYEPLS------------EWEAELLFEIIDE 136 (178)
T ss_dssp CTSS---------------HHHHHCTHHHHHH
T ss_pred cceeeec------------ccccccchhhhhH
Confidence 9754322 1256678888873
No 258
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00038 Score=71.06 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=74.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc------ccc---cC--cc-----ccchHHHHHHHHHhcccch-h
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQ---AG--YV-----GEDVESILYKLLAQAEFNV-E 387 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~------l~~---sg--yv-----G~~~e~~l~~lf~~a~~~l-~ 387 (556)
+..+||+|+.|+||..+|.++|+.+-+.--.-.|.. +.. .+ ++ ... .+.++++.+...... +
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~-id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK-KEDALSIINKLNRPSVE 85 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC-HHHHHHHHHHHccCchh
Confidence 477999999999999999999988743210001110 000 00 10 011 233445444332211 2
Q ss_pred ccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe-cCCCcC
Q 008723 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC-GGAFVD 466 (556)
Q Consensus 388 ~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~-t~n~~d 466 (556)
.....|++||++|++... ..++||+.||+ ...+.+||+ |.+...
T Consensus 86 ~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE---------------------Pp~~t~fiLit~~~~~ 130 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE---------------------PPKNTYGIFTTRNENN 130 (261)
T ss_pred cCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC---------------------CCCCeEEEEEECChHh
Confidence 234679999999999988 89999999994 222334444 555667
Q ss_pred hHHHHHhcccccccccCCh
Q 008723 467 LEKTISERRQDSSIGFGAP 485 (556)
Q Consensus 467 l~~~i~~rr~~~~i~f~~p 485 (556)
+..+++.|++. +.|+.+
T Consensus 131 lLpTI~SRCq~--~~~~~~ 147 (261)
T PRK05818 131 ILNTILSRCVQ--YVVLSK 147 (261)
T ss_pred CchHhhhheee--eecCCh
Confidence 77888887654 334443
No 259
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.73 E-value=8.8e-05 Score=85.22 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=74.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc------ccccCccccchHHHHHHHHHhcccchhccCCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~------l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEI 399 (556)
..|.+.||+|+||||+|+.||+.++.+|+...... ..+.++.-.+ +..+.+++......+. ..-+|+|+-
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~ 518 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDD-EAAIAALARGLPVRFE---GDRIWLGGE 518 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCC-HHHHHHHHhcCCeeec---CCeEEECCe
Confidence 46889999999999999999999999886433221 1222222122 4445555555444432 224899986
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~ 460 (556)
| +....++.+++..+|.......+.+.|...+..+ .....+++++|++-.+.
T Consensus 519 ~-~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~--------~~~~~~v~eGRdigtvv 570 (661)
T PRK11860 519 D-VTDAIRTEAAGMGASRVSALPAVRAALLALQRSF--------RRLPGLVADGRDMGTVI 570 (661)
T ss_pred E-chhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHH--------hhCCCEEEECCCCccEE
Confidence 6 7888888888877776433333444443222222 22346788888874443
No 260
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=9.1e-05 Score=82.01 Aligned_cols=97 Identities=35% Similarity=0.575 Sum_probs=76.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
+...++++||||||||++++++|.. +..+..++..+.. .+|+|.. +..++.+|..+... .++++|+||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~----~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEKL----APSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHHh----CCCeEeechhhhcc
Confidence 4588999999999999999999998 6656677777766 4588887 67788888777644 56899999999999
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhc
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
+.+.. ......+.+...|+..|++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 88765 2233335588999999884
No 261
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.69 E-value=0.00012 Score=84.81 Aligned_cols=209 Identities=17% Similarity=0.172 Sum_probs=99.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccc------cccCcccc----c---hHHHHHHHHHhcccchhc-cCCe
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL------TQAGYVGE----D---VESILYKLLAQAEFNVEA-AQQG 392 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l------~~sgyvG~----~---~e~~l~~lf~~a~~~l~~-a~~~ 392 (556)
.|.|.|||||||||+|+.||+.+++.|+......- ...+..-. + ....+.+++......+.. ...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDSP 82 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCCc
Confidence 58899999999999999999999987765443210 10110000 0 012222333222211111 1223
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccC-CCC-cccCCCCCceEEecCceEEEecCCC------
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVP-EKG-ARKHPRGDSIQMDTKDILFICGGAF------ 464 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ip-e~g-~r~~~~~~~ivid~rnii~I~t~n~------ 464 (556)
-++++..| +....++.+++..+|.-.....+.+.|...+..+. ... ........++++++|++-.+.-.+-
T Consensus 83 ~i~~~~~~-v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p~a~~K~~l 161 (712)
T PRK09518 83 GVFADGED-ISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAPDAEVRILL 161 (712)
T ss_pred EEEECCeE-chHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEecCCCeEEEE
Confidence 57777766 66566665665555442222223333332222211 000 0001123468899998755543221
Q ss_pred -cChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCC--ceeeCCCCCHHHHHH
Q 008723 465 -VDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVK 541 (556)
Q Consensus 465 -~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~--~iI~f~~ls~eeL~q 541 (556)
.+++.- +.||...... ..++++.+.+.+.= ..|. +.+.| +...+ .+|--..++.+++++
T Consensus 162 ~A~~~~R-a~Rr~~~~~~------------~~~~~~~~~~~~Rd-~~d~--R~~~p--l~~~~da~~idts~~~~~~v~~ 223 (712)
T PRK09518 162 TAREEVR-QARRSGQDRS------------ETPGVVLEDVAARD-EADS--KVTSF--LSAADGVTTLDNSDLDFDETLD 223 (712)
T ss_pred ECCHHHH-HHHHHHhhhc------------CCHHHHHHHHHHHh-hhcc--cccCC--CCCCCCeEEEECCCCCHHHHHH
Confidence 011111 1222211100 12222222222221 1121 22333 44455 567788999999999
Q ss_pred HHhhhHHHHhhhh
Q 008723 542 VLTEPKNALGQIT 554 (556)
Q Consensus 542 Il~~~~~~l~kqy 554 (556)
++.+.+..+..+.
T Consensus 224 ~i~~~i~~~~~~~ 236 (712)
T PRK09518 224 LLIGLVEDAIEEQ 236 (712)
T ss_pred HHHHHHHhhhhhh
Confidence 9888777766554
No 262
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.66 E-value=0.00026 Score=78.73 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=71.6
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc------ccccCccccchHHHHHHHHHhcccchhc--cCCeEE
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGEDVESILYKLLAQAEFNVEA--AQQGMV 394 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~------l~~sgyvG~~~e~~l~~lf~~a~~~l~~--a~~~VL 394 (556)
..+..|.|.||+||||||+|+.||+.++..++..+... ..+.++. .+....+..++......+.. ..+..+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGID-PQDEEALAELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcC-CcCHHHHHHHHhcCCeeeccCCCCCceE
Confidence 35677889999999999999999999986554322210 1112221 12233344444443333311 123468
Q ss_pred EEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEe
Q 008723 395 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (556)
Q Consensus 395 fLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~ 460 (556)
|+|.-| +....++.+++..+|.......+.+.|...+..+ ....+++++++++-.+.
T Consensus 361 ~~~~~d-v~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~--------~~~~~iV~eGRDigtvV 417 (512)
T PRK13477 361 WINGED-VTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRI--------GEKGGLVAEGRDIGTHV 417 (512)
T ss_pred EeCCcc-hHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHH--------hhcCCEEEEcccceeEE
Confidence 888877 6666777777766665333333333333222221 22346788888764444
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=5.2e-05 Score=67.10 Aligned_cols=31 Identities=42% Similarity=0.777 Sum_probs=27.4
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
|+|.|+||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999877765554
No 264
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.60 E-value=0.00024 Score=70.72 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=53.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc------ccccCccccchHHHHHHHHHhcccchhccC-CeEEEEec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDE 398 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~------l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~-~~VLfLDE 398 (556)
..|.|.||+|+||||+|+.||+.++.+++...... ....++.-.+ +..+..++......+.... ..-++||.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTS-EDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCC-HHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 35889999999999999999999987766432110 0111211122 3444455554443332222 22488888
Q ss_pred ccccchhhhcccccccCch
Q 008723 399 VDKITKKAESLNISRDVSG 417 (556)
Q Consensus 399 ID~l~~~r~~~~~~~~~s~ 417 (556)
-+ ++....+.+++..+|.
T Consensus 82 ~~-v~~~ir~~~v~~~~s~ 99 (217)
T TIGR00017 82 ED-VSEAIRTQEVANAASK 99 (217)
T ss_pred cc-hHHHhcCHHHHHHHHH
Confidence 76 6666666666655554
No 265
>PRK06921 hypothetical protein; Provisional
Probab=97.58 E-value=0.0002 Score=73.40 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=28.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh----CCCeeeeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTL 361 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s~l 361 (556)
.+++|+|++|||||+||.+||+++ +...+.+...++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 679999999999999999999887 344455555443
No 266
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.54 E-value=0.0001 Score=80.29 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=83.0
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
.+.+...+...|.|++.+|++|..+|. ....+..+. .|+ .....+|+|.|.||+.||-|.+
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLV--------Ggvd~~~~d--GMK---------IRGdINicLmGDPGVAKSQLLk 393 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLV--------GGVDKSPGD--GMK---------IRGDINICLMGDPGVAKSQLLK 393 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhh--------CCCCCCCCC--Cce---------eecceeEEecCCCchhHHHHHH
Confidence 344566666669999999999987774 111111111 111 1235799999999999999999
Q ss_pred HHHHHhCCCeeeeccccccccCccccchHHHHHHHHH----hcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 344 TLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 344 aLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~----~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
.+.+..-.-.+..--.+ + -+|-+ ...++.-.. ..-+.+-.+.++|..|||+|++...
T Consensus 394 yi~rlapRgvYTTGrGS---S-GVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------------- 454 (721)
T KOG0482|consen 394 YISRLAPRGVYTTGRGS---S-GVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------------- 454 (721)
T ss_pred HHHhcCcccceecCCCC---C-ccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------
Confidence 99987643322111100 1 12222 111111000 0012234567899999999999776
Q ss_pred HHHHHHHHHhccccccCCCC
Q 008723 420 VQQALLKMLEGTIVNVPEKG 439 (556)
Q Consensus 420 v~~~LL~~LEg~~v~ipe~g 439 (556)
-..++.++||...++|...|
T Consensus 455 DRtAIHEVMEQQTISIaKAG 474 (721)
T KOG0482|consen 455 DRTAIHEVMEQQTISIAKAG 474 (721)
T ss_pred hhHHHHHHHHhhhhhhhhhc
Confidence 45688899998778775554
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.50 E-value=0.00017 Score=75.44 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=30.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~ 362 (556)
..+++|+|++|||||+||.+||+++ +.....+...++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 3689999999999999999999988 5566656665543
No 268
>PHA02624 large T antigen; Provisional
Probab=97.50 E-value=0.00024 Score=79.69 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=77.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
.+..++|+||+|||||+++++|++.++...+.+++..-... |.... ....-+++||++..-.
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~--------------FwL~p----l~D~~~~l~dD~t~~~ 491 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN--------------FELGC----AIDQFMVVFEDVKGQP 491 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH--------------HHhhh----hhhceEEEeeeccccc
Confidence 35689999999999999999999999666666664321111 10000 0133488999987443
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhcc-ccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhccccccccc
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg~-~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f 482 (556)
-.......|...+ -..-|+..|||. .|+++.++. ..+.+..- ..|+|+|.-.+..++. -||...+.|
T Consensus 492 ~~~~~Lp~G~~~d---Nl~~lRn~LDG~V~v~ld~KH~------n~~q~~~P--PlliT~Ney~iP~T~~-~Rf~~~~~F 559 (647)
T PHA02624 492 ADNKDLPSGQGMN---NLDNLRDYLDGSVPVNLEKKHL------NKRSQIFP--PGIVTMNEYLIPQTVK-ARFAKVLDF 559 (647)
T ss_pred cccccCCcccccc---hhhHHHhhcCCCCccccchhcc------CchhccCC--CeEEeecCcccchhHH-HHHHHhccc
Confidence 3221111222211 347799999998 777755431 11222222 4566778666655554 366677777
Q ss_pred CC
Q 008723 483 GA 484 (556)
Q Consensus 483 ~~ 484 (556)
.-
T Consensus 560 ~~ 561 (647)
T PHA02624 560 KP 561 (647)
T ss_pred cc
Confidence 53
No 269
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00081 Score=72.74 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=42.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC-----CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN-----VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~-----~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.+++|+|++|.|||.|++|++++.. ..++.+...++... ++-.--.+.+ +-|+.. . .--+|+||+|+
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~-~v~a~~~~~~-~~Fk~~-----y-~~dlllIDDiq 185 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND-FVKALRDNEM-EKFKEK-----Y-SLDLLLIDDIQ 185 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH-HHHHHHhhhH-HHHHHh-----h-ccCeeeechHh
Confidence 6899999999999999999998872 23555555443311 1000000000 111111 1 22389999999
Q ss_pred ccchh
Q 008723 401 KITKK 405 (556)
Q Consensus 401 ~l~~~ 405 (556)
.+..+
T Consensus 186 ~l~gk 190 (408)
T COG0593 186 FLAGK 190 (408)
T ss_pred HhcCC
Confidence 88765
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.47 E-value=0.00012 Score=68.56 Aligned_cols=34 Identities=29% Similarity=0.608 Sum_probs=30.1
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
++..|+|+|+|||||||+|+.||+.++.+|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999998888554
No 271
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00024 Score=66.97 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC--
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~-- 352 (556)
.+|.++..+.|...+. . .....+..++|+|++|+|||++.+.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~-~---------------------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~ 53 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A---------------------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGG 53 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G---------------------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHH-H---------------------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4788888887777662 1 001124789999999999999999888776332
Q ss_pred -eeeeccccc
Q 008723 353 -FVIADATTL 361 (556)
Q Consensus 353 -fv~i~~s~l 361 (556)
++.+++...
T Consensus 54 ~~~~~~~~~~ 63 (185)
T PF13191_consen 54 YVISINCDDS 63 (185)
T ss_dssp -EEEEEEETT
T ss_pred EEEEEEEecc
Confidence 555555544
No 272
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.44 E-value=0.00016 Score=78.92 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=76.2
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+.+.+...|.|.+.+|+++.-.|.---+++ +.|-+. .....+|||.|.|||.|+-+.|-+-
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgGsrK~-----------------LpDg~~--lRGDINVLLLGDPgtAKSQlLKFvE 385 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGGSRKR-----------------LPDGVT--LRGDINVLLLGDPGTAKSQLLKFVE 385 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcCcccc-----------------CCCcce--eccceeEEEecCCchhHHHHHHHHH
Confidence 444555558999999999988774211111 011110 1134799999999999999999887
Q ss_pred HHhCCCeeee-ccc---cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 347 RHVNVPFVIA-DAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 347 ~~l~~~fv~i-~~s---~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
+..-.-++.- ..+ -++.+ .+-.. ..++ |-..-+.+-.+.++|+.|||+|++-.+ -.-
T Consensus 386 kvsPIaVYTSGKGSSAAGLTAS-V~RD~---~tRe-FylEGGAMVLADgGVvCIDEFDKMre~--------------DRV 446 (729)
T KOG0481|consen 386 KVSPIAVYTSGKGSSAAGLTAS-VIRDP---STRE-FYLEGGAMVLADGGVVCIDEFDKMRED--------------DRV 446 (729)
T ss_pred hcCceEEEecCCCcccccceee-EEecC---Ccce-EEEecceEEEecCCEEEeehhhccCch--------------hhh
Confidence 6653322210 000 11111 00000 0000 000011233468899999999999765 234
Q ss_pred HHHHHHhccccccCCCC
Q 008723 423 ALLKMLEGTIVNVPEKG 439 (556)
Q Consensus 423 ~LL~~LEg~~v~ipe~g 439 (556)
++.+.||...+.|...|
T Consensus 447 AIHEAMEQQTISIAKAG 463 (729)
T KOG0481|consen 447 AIHEAMEQQTISIAKAG 463 (729)
T ss_pred HHHHHHHhhhHHHhhhc
Confidence 67888997777774443
No 273
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.41 E-value=0.00062 Score=80.05 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=28.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|.|.||+||||||+|+.||+.++..|+....
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~ 67 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGS 67 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHH
Confidence 468999999999999999999999987765443
No 274
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.0004 Score=65.97 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=32.7
Q ss_pred cCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhh
Q 008723 515 YGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQI 553 (556)
Q Consensus 515 ~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kq 553 (556)
|++...=++=+|.+|....++.++...|+....+.+...
T Consensus 138 YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 138 YGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred hCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 456666678889999999999999999999999887654
No 275
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.33 E-value=0.00011 Score=90.43 Aligned_cols=114 Identities=24% Similarity=0.345 Sum_probs=76.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccccc-Ccccc----chHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGE----DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~s-gyvG~----~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
.++||.||+++|||.+++-+|+..+..+++++-.+.++. .|+|. +..+. .|+.....-+.-++..+||||++
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l---~freg~LV~Alr~G~~~vlD~ln 517 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDL---VFREGVLVQALRNGDWIVLDELN 517 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCe---eeehhHHHHHHHhCCEEEecccc
Confidence 589999999999999999999999999999988765432 23331 10000 00000000111267799999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHhc-cccccCCCCcccCCCCCceEEecCce
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQMDTKDI 456 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg-~~v~ipe~g~r~~~~~~~ivid~rni 456 (556)
....+ ++++|.++++. +.+.+|+.....+++.....+.+.|.
T Consensus 518 la~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 518 LAPHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred ccchH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 77666 99999999994 77888877554444444444444444
No 276
>PRK13947 shikimate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=67.41 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=29.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+|+|.|+|||||||+|+.||+.++.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999986664
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.33 E-value=0.00045 Score=63.00 Aligned_cols=33 Identities=45% Similarity=0.607 Sum_probs=25.6
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
.++|+|+||+|||++++.++..+ +.+.+.++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 37899999999999999999877 3445544443
No 278
>PHA00729 NTP-binding motif containing protein
Probab=97.32 E-value=0.00035 Score=70.00 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=23.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+|+|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 279
>PRK07261 topology modulation protein; Provisional
Probab=97.32 E-value=0.00055 Score=65.40 Aligned_cols=43 Identities=30% Similarity=0.587 Sum_probs=33.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGED 370 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~ 370 (556)
.|+|+|+||+||||+|+.|++.++.+++.++..... .+|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 489999999999999999999999988877765433 2344444
No 280
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0002 Score=68.81 Aligned_cols=34 Identities=35% Similarity=0.734 Sum_probs=31.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
.+|+|+|++|+||||+.|+||+.|+.+|+..|..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~ 36 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE 36 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH
Confidence 5799999999999999999999999999877653
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00023 Score=67.85 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=30.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
.|+++||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 599999999999999999999999998887754
No 282
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.25 E-value=0.0039 Score=64.63 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=28.5
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCC------eeeeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT 359 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~------fv~i~~s 359 (556)
.+..|.|.|+=|+|||++.+.+-+.+... ++.+++.
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w 60 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAW 60 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccc
Confidence 34789999999999999999999888443 5555554
No 283
>PRK00625 shikimate kinase; Provisional
Probab=97.24 E-value=0.00028 Score=67.85 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=29.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+|+|+|.||+||||+++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 59999999999999999999999999987764
No 284
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.00029 Score=67.23 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.1
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|+|.|+||+||||+|+.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
No 285
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.22 E-value=0.0032 Score=68.40 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=47.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH--h--CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH--V--NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~--l--~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
..|+++.||+|||||.+|.+|+.. + | ..++++.+. ..+....... -....+|+|||+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf-------------~~L~~~~lg~--v~~~DlLI~DEvg 270 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLF-------------YNISTRQIGL--VGRWDVVAFDEVA 270 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHH-------------HHHHHHHHhh--hccCCEEEEEcCC
Confidence 489999999999999999998866 2 2 112222222 1111111011 1245699999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+..... .+.++.|-..|+
T Consensus 271 ylp~~~~----------~~~v~imK~yMe 289 (449)
T TIGR02688 271 TLKFAKP----------KELIGILKNYME 289 (449)
T ss_pred CCcCCch----------HHHHHHHHHHHH
Confidence 8654421 226788888888
No 286
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.19 E-value=0.00036 Score=64.14 Aligned_cols=31 Identities=42% Similarity=0.765 Sum_probs=28.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+|+|+|+||+||||+|+.||+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998887655
No 287
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00033 Score=65.69 Aligned_cols=32 Identities=31% Similarity=0.639 Sum_probs=28.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.++||++|.|||||||+|..||..++.+++.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 47999999999999999999999998877644
No 288
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.0028 Score=64.72 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..+++.||+|||||++|.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999974
No 289
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.16 E-value=0.0019 Score=64.64 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=28.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|.|.|++|+|||++|+.||+.++.+++...
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 57899999999999999999999998776433
No 290
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.10 E-value=0.0029 Score=67.75 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.5
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
..++++.|+|++|+|||+|.-++.+.+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 35789999999999999999999988744
No 291
>PRK13948 shikimate kinase; Provisional
Probab=97.10 E-value=0.00053 Score=66.54 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=31.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
++.+|+|.|.+|+||||+++.||+.++.+|+..|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 45889999999999999999999999999987663
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.06 E-value=0.00064 Score=76.15 Aligned_cols=63 Identities=27% Similarity=0.439 Sum_probs=46.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++|++++++.|.+.+......+ ......++|.||||+|||+||+.||+.+
T Consensus 74 fF~d-~yGlee~ieriv~~l~~Aa~gl-------------------------~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 74 AFEE-FYGMEEAIEQIVSYFRHAAQGL-------------------------EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred chhc-ccCcHHHHHHHHHHHHHHHHhc-------------------------CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4454 7999999999998885332221 0123679999999999999999999888
Q ss_pred -CCCeeeecc
Q 008723 350 -NVPFVIADA 358 (556)
Q Consensus 350 -~~~fv~i~~ 358 (556)
..+++.+..
T Consensus 128 e~~~~Y~~kg 137 (644)
T PRK15455 128 ERVPIYVLKA 137 (644)
T ss_pred HhCcceeecC
Confidence 346665544
No 293
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.05 E-value=0.0021 Score=61.50 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=20.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 294
>PRK06217 hypothetical protein; Validated
Probab=97.05 E-value=0.00054 Score=65.83 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=29.6
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
.|+|.|.+|+||||+|+.|++.++.+++..+.-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~ 35 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDY 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce
Confidence 599999999999999999999999998876643
No 295
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.04 E-value=0.0012 Score=67.13 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC------eeeeccc------cccc--------cCccccchHHH---HHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT------TLTQ--------AGYVGEDVESI---LYKLLAQ 381 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~------fv~i~~s------~l~~--------sgyvG~~~e~~---l~~lf~~ 381 (556)
+..++|+||+|+||||+++.+++.+... ++.+... ++.. .. .+...... ...+...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887542 2121111 0000 00 11121222 2233334
Q ss_pred cccchhccCCeEEEEecccccchhh
Q 008723 382 AEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 382 a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
+..........+|||||+.++...-
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhh
Confidence 4433344567899999999987653
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.03 E-value=0.0031 Score=61.62 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=24.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
..++|.|++|||||++.+.+.+.+ +..++-+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 457888999999999999988766 444444433
No 297
>PRK13949 shikimate kinase; Provisional
Probab=97.03 E-value=0.00057 Score=65.27 Aligned_cols=33 Identities=39% Similarity=0.661 Sum_probs=29.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
.+|+|+|+||+||||+++.||+.++.+|+..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 369999999999999999999999998887663
No 298
>PHA02774 E1; Provisional
Probab=97.01 E-value=0.0043 Score=69.63 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=52.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeee-eccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI-ADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~-i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
...++|+||||||||++|.+|++.++...+. ++..+.. | +..+ ...-|++|||+-.-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F---w--------Lqpl----------~d~ki~vlDD~t~~~ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF---W--------LQPL----------ADAKIALLDDATHPC 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc---c--------cchh----------ccCCEEEEecCcchH
Confidence 3689999999999999999999998654432 4432110 1 1011 122499999993221
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhccccccCCC
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~ 438 (556)
-. -+...|..+|||..+.|+.+
T Consensus 493 w~-------------y~d~~Lrn~LdG~~v~lD~K 514 (613)
T PHA02774 493 WD-------------YIDTYLRNALDGNPVSIDCK 514 (613)
T ss_pred HH-------------HHHHHHHHHcCCCcceeeec
Confidence 11 15667999999988887655
No 299
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.00 E-value=0.0029 Score=70.22 Aligned_cols=129 Identities=23% Similarity=0.329 Sum_probs=77.4
Q ss_pred HHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 268 ~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.+.|...|.|.+.+|++|.-.+. .+..+.+..-.. .....+|||+|.|-|.|+-|.|.+-+
T Consensus 296 a~SLAPSI~GH~~vKkAillLLl--------GGvEk~L~NGsh-----------lRGDINiLlvGDPSvAKSQLLRyVLn 356 (818)
T KOG0479|consen 296 ARSLAPSIYGHDYVKKAILLLLL--------GGVEKNLENGSH-----------LRGDINILLVGDPSVAKSQLLRYVLN 356 (818)
T ss_pred hhccCcccccHHHHHHHHHHHHh--------ccceeccCCCce-----------eccceeEEEecCchHHHHHHHHHHHh
Confidence 34445559999999999877764 222221111111 12357999999999999999999876
Q ss_pred HhCCCeeeeccccccccCccc---------cchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 348 HVNVPFVIADATTLTQAGYVG---------EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 348 ~l~~~fv~i~~s~l~~sgyvG---------~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
.....+ ..+--.++| +| ++.|+.+.. +.+-.+..+|+.|||+|+++.-
T Consensus 357 tAplAI---~TTGRGSSG-VGLTAAVTtD~eTGERRLEA------GAMVLADRGVVCIDEFDKMsDi------------- 413 (818)
T KOG0479|consen 357 TAPLAI---ATTGRGSSG-VGLTAAVTTDQETGERRLEA------GAMVLADRGVVCIDEFDKMSDI------------- 413 (818)
T ss_pred cccccc---cccCCCCCC-ccceeEEeeccccchhhhhc------CceEEccCceEEehhcccccch-------------
Confidence 553211 111000010 11 111333211 2223467899999999999765
Q ss_pred HHHHHHHHHHhccccccCCCC
Q 008723 419 GVQQALLKMLEGTIVNVPEKG 439 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g 439 (556)
=..++.++||...|.|...|
T Consensus 414 -DRvAIHEVMEQqtVTIaKAG 433 (818)
T KOG0479|consen 414 -DRVAIHEVMEQQTVTIAKAG 433 (818)
T ss_pred -hHHHHHHHHhcceEEeEecc
Confidence 35678899997777775543
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0014 Score=70.65 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=47.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec-----ccc---------------ccccCccccchHHHHH---HHHHhc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD-----ATT---------------LTQAGYVGEDVESILY---KLLAQA 382 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~-----~s~---------------l~~sgyvG~~~e~~l~---~lf~~a 382 (556)
...+|+||+|+|||||++.|++.+....+.+. ..+ ++.+.+. ...+..++ ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d-~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD-EPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC-CCHHHHHHHHHHHHHHH
Confidence 56889999999999999999987743211111 111 0111111 11122222 334444
Q ss_pred ccchhccCCeEEEEecccccchhh
Q 008723 383 EFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 383 ~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
.......+..+||||||+++...-
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHH
Confidence 444445677899999999997753
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0022 Score=61.03 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++++|+||+||||+++.|++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999887
No 302
>PRK14532 adenylate kinase; Provisional
Probab=96.96 E-value=0.00067 Score=65.11 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
+|+|.|+||+||||+|+.||+.++.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766543
No 303
>PRK14530 adenylate kinase; Provisional
Probab=96.96 E-value=0.00076 Score=66.48 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=27.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5799999999999999999999998776633
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=96.96 E-value=0.016 Score=61.62 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+|++|+||||++..||..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998776
No 305
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.95 E-value=0.00076 Score=61.31 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=27.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
|+|.|+|||||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999988666
No 306
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.94 E-value=0.00053 Score=62.26 Aligned_cols=27 Identities=44% Similarity=0.801 Sum_probs=23.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|++.|+||+||||+|+.+++.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 789999999999999999999984443
No 307
>PRK13946 shikimate kinase; Provisional
Probab=96.91 E-value=0.00086 Score=64.61 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+..|+|+|.+|+||||+++.||+.++.+|+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4689999999999999999999999999987664
No 308
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.91 E-value=0.00095 Score=63.00 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=29.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
.+++|+|.+|+||||+|+.||+.++.+|+..+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468999999999999999999999999986654
No 309
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.002 Score=73.28 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=31.2
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.+..-..++..+.|+||+|.||||+|..|-+..
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 556677777788899999999999999999998766
No 310
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.88 E-value=0.0011 Score=63.52 Aligned_cols=34 Identities=38% Similarity=0.768 Sum_probs=30.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+.+|+|.|++|+||||+++.||+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999999887765
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.86 E-value=0.00096 Score=63.49 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
|+|+|+||+||||+|+.||+.++..+ ++..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 4444433
No 312
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.84 E-value=0.00097 Score=63.52 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=28.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.|+||+||||+|+.|++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5699999999999999999999988777655444
No 313
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.82 E-value=0.001 Score=61.33 Aligned_cols=29 Identities=38% Similarity=0.762 Sum_probs=25.4
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
++|.|+||+||||+|+.|++.++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 78999999999999999999988766543
No 314
>PRK14531 adenylate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=63.39 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..|+|+|+||+||||+++.||+.++.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 469999999999999999999999877654
No 315
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.80 E-value=0.00098 Score=62.39 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=25.1
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
|+|.||+|+||||+|+.|++.++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 57899999999999999999998766543
No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.79 E-value=0.0012 Score=63.22 Aligned_cols=29 Identities=41% Similarity=0.763 Sum_probs=25.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
|+|+|+||+||||+|+.||+.++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998766543
No 317
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.78 E-value=0.036 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..|.|.|++|+||||+++.|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999999884
No 318
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.75 E-value=0.0063 Score=59.84 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=57.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
..++|.|+-|+|||++.+.|+... +. +..... +..+.+..+. ..-++.|||++.+...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~-d~~~~~-------~~kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FS-DSINDF-------DDKDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----cc-CccccC-------CCcHHHHHHH----------HhHheeHHHHhhcchh
Confidence 568899999999999999997652 21 111111 1011221221 2238999999987744
Q ss_pred hhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcC
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d 466 (556)
-++.|-.+|......+ +.+......--.+..+||+|+|..+
T Consensus 111 --------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred --------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCcc
Confidence 4566666665332221 1122233444567788899988654
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.75 E-value=0.021 Score=62.74 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=28.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
.+..++|+|++|+||||+|..||..+ +.....+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45789999999999999999999877 4444445544
No 320
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.72 E-value=0.0026 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.670 Sum_probs=30.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
++..|+|+|.+|||||++++.||+.++.+|+.++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3478999999999999999999999999999655
No 321
>PRK13808 adenylate kinase; Provisional
Probab=96.71 E-value=0.033 Score=59.04 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=26.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|+||||+||||+|+.|++.++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999998765543
No 322
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.68 E-value=0.01 Score=63.37 Aligned_cols=63 Identities=27% Similarity=0.288 Sum_probs=47.7
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
++..|.+.+..++.|...+-+. .. .-+.+|.|+|.+|||||.+.+.+-+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~----------------~~------------~~PS~~~iyG~sgTGKT~~~r~~l~~~n 55 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN----------------SC------------TIPSIVHIYGHSGTGKTYLVRQLLRKLN 55 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC----------------Cc------------ccceeEEEeccCCCchhHHHHHHHhhcC
Confidence 3444777788888777766311 00 1246789999999999999999999999
Q ss_pred CCeeeeccccc
Q 008723 351 VPFVIADATTL 361 (556)
Q Consensus 351 ~~fv~i~~s~l 361 (556)
.+.+-++|-+.
T Consensus 56 ~~~vw~n~~ec 66 (438)
T KOG2543|consen 56 LENVWLNCVEC 66 (438)
T ss_pred CcceeeehHHh
Confidence 99998888754
No 323
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.016 Score=68.22 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=52.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh----------CCCeeeecccccc-ccCccccchHHHHHHHHHhcccchhccCCeEE
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l----------~~~fv~i~~s~l~-~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VL 394 (556)
.+-+|+|+||+|||.++.-+|+.. +..++.++...+. ...+.|+- +..+..+.+.... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 689999999999999999999876 2244455554433 12344544 6677777765442 2355689
Q ss_pred EEecccccchh
Q 008723 395 YIDEVDKITKK 405 (556)
Q Consensus 395 fLDEID~l~~~ 405 (556)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999988765
No 324
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.65 E-value=0.0021 Score=64.22 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA 346 (556)
+..+||+|+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4669999999999999999997
No 325
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0047 Score=57.61 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=27.0
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~ 360 (556)
++|.|+||+||||+|+.|+..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 55555565443
No 326
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.026 Score=61.05 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+||+|+||||++..||..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 327
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.62 E-value=0.002 Score=64.75 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|+|.||||+||||+|+.||+.++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999987776444
No 328
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.59 E-value=0.0044 Score=67.00 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
.+..++|+||+|+|||++++.|++.+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4577999999999999999999998643
No 329
>PRK04296 thymidine kinase; Provisional
Probab=96.58 E-value=0.0083 Score=58.28 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=23.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
-++++||+|+||||++..++..+ +...+.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999998888665 4444444
No 330
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.0067 Score=60.95 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC--------CCeeeeccccccccCccccchHHHHH--HHHHh---c---ccchhc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN--------VPFVIADATTLTQAGYVGEDVESILY--KLLAQ---A---EFNVEA 388 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~--------~~fv~i~~s~l~~sgyvG~~~e~~l~--~lf~~---a---~~~l~~ 388 (556)
..+.||.|||+|||||+.|-||+.+. .....+|..+-......|...-..-+ .+++. + -..+..
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 36799999999999999999998772 23445555432222233322111000 00000 0 011334
Q ss_pred cCCeEEEEeccccc
Q 008723 389 AQQGMVYIDEVDKI 402 (556)
Q Consensus 389 a~~~VLfLDEID~l 402 (556)
..|-|+++|||-..
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 57889999999864
No 331
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.58 E-value=0.026 Score=61.78 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
+..|+|+|++|+||||++..||..+ +.....+++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 4678999999999999999999777 5555555553
No 332
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.015 Score=58.85 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred hhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 313 AAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 313 ~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.+.++.-...+.-+.|.||+||||||+-+.||...
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445566666677889999999999999999999766
No 333
>PRK06762 hypothetical protein; Provisional
Probab=96.51 E-value=0.0024 Score=59.94 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=28.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l 361 (556)
.-|+|+|+||+||||+|+.|++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458899999999999999999998655555555433
No 334
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.50 E-value=0.0049 Score=58.48 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999998876544 445555544
No 335
>PRK14528 adenylate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=61.60 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=26.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..+++.||||+||||+|+.|++.++.+++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999877654
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.49 E-value=0.0026 Score=60.48 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=25.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
.-|+|.|+||+||||+|+.|++.++..++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46889999999999999999999986554
No 337
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0022 Score=61.59 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|+++|.|||||||+|+.|+ .++...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8888776554
No 338
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.49 E-value=0.0031 Score=59.19 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=23.2
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeeccccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l 361 (556)
|+|+|++|||||||++.|++. |.+++.-.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~ 34 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREI 34 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHH
Confidence 889999999999999999998 877664333333
No 339
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0026 Score=61.56 Aligned_cols=32 Identities=41% Similarity=0.800 Sum_probs=25.9
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
.|+|.||||+||||+|+.||+.++.+ .++..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~--hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP--HLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc--EEcHhH
Confidence 48999999999999999999996554 444433
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.013 Score=57.53 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|+||+|+||||++-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 468999999999999998888766
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0087 Score=61.28 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=33.9
Q ss_pred hhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 312 AAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 312 ~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+.+.++.....+..+-|+|++||||||++|.|.+...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 356677888888889999999999999999999998774
No 342
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.45 E-value=0.0038 Score=73.45 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=34.0
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
.+++.||||+|||+.|.++|..++..+++.|+++..
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 479999999999999999999999999999999876
No 343
>PRK02496 adk adenylate kinase; Provisional
Probab=96.45 E-value=0.0027 Score=60.72 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=26.4
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.++|.|+||+||||+|+.||+.++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766643
No 344
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.44 E-value=0.0023 Score=56.52 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.9
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 345
>PRK06547 hypothetical protein; Provisional
Probab=96.44 E-value=0.0027 Score=60.97 Aligned_cols=32 Identities=44% Similarity=0.544 Sum_probs=27.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|++.|++|+||||+|+.|++.++.+++..+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 56888899999999999999999987776544
No 346
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.39 E-value=0.021 Score=64.49 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=13.8
Q ss_pred CcEEEeCCCCChhHH
Q 008723 326 SNVLLMGPTGSGKTL 340 (556)
Q Consensus 326 ~~vLL~GPpGTGKTt 340 (556)
..+++.|++||||||
T Consensus 67 qvlIviGeTGsGKST 81 (674)
T KOG0922|consen 67 QVLIVIGETGSGKST 81 (674)
T ss_pred CEEEEEcCCCCCccc
Confidence 679999999999997
No 347
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0067 Score=58.61 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~ 362 (556)
+..|.|+|.+|+||||+|.+|.+.| |...+.+|...+.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 4679999999999999999999888 7788888887654
No 348
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.36 E-value=0.0058 Score=61.57 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=26.0
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
|+|+|.||+||||+|+.|++.+ +..++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 7899999999999999999887 3455555543
No 349
>PTZ00301 uridine kinase; Provisional
Probab=96.36 E-value=0.025 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-|.|.|+||+||||+|+.|++.++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH
Confidence 4578999999999999999998773
No 350
>PRK04182 cytidylate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=59.15 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=26.6
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
.|+|.|++|+||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988765
No 351
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.34 E-value=0.016 Score=59.09 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=29.2
Q ss_pred hhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 313 AAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 313 ~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.+++..-.....-++|.||+||||||+.|.|-+.+
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 3445555555566778999999999999999998776
No 352
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.34 E-value=0.0036 Score=61.65 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=26.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+++|+||+||||+|+.||+.++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999998766543
No 353
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.34 E-value=0.0033 Score=61.72 Aligned_cols=29 Identities=38% Similarity=0.706 Sum_probs=25.7
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998766543
No 354
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.28 E-value=0.01 Score=56.33 Aligned_cols=73 Identities=26% Similarity=0.356 Sum_probs=43.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc--CccccchHH---HHHHHHHhcccchhccCCeEEEEe
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA--GYVGEDVES---ILYKLLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s--gyvG~~~e~---~l~~lf~~a~~~l~~a~~~VLfLD 397 (556)
..|+|+|.+|+||||+|++|.+.| +.+.+.++...+... .-.|.+.+. .++.+...+... ..++.++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll--~~~G~ivIva 80 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLL--ADQGIIVIVA 80 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHH--HHTTSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHH--HhCCCeEEEe
Confidence 468999999999999999999888 677888888766532 012333332 333333333222 2355677776
Q ss_pred ccc
Q 008723 398 EVD 400 (556)
Q Consensus 398 EID 400 (556)
=|.
T Consensus 81 ~is 83 (156)
T PF01583_consen 81 FIS 83 (156)
T ss_dssp ---
T ss_pred ecc
Confidence 444
No 355
>PLN02199 shikimate kinase
Probab=96.27 E-value=0.0042 Score=64.65 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=30.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+.+|+|+|.+|+||||+++.||+.++.+|+..|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4789999999999999999999999999986664
No 356
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.26 E-value=0.038 Score=57.16 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+||+|+||||++..||..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998766
No 357
>PLN02200 adenylate kinase family protein
Probab=96.24 E-value=0.0042 Score=62.56 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
+..|+|.|+||+||||+|+.||+.++... +++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 35688999999999999999999998654 5555554
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.24 E-value=0.017 Score=53.57 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.5
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..+.|.|++|+||||++++|+..+
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34455555567889999999999999999999876
No 359
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.19 E-value=0.0041 Score=58.11 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.6
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|.|++|+||||+|+.|++.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 388999999999999999999999887643
No 360
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.19 E-value=0.0097 Score=61.30 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=37.0
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc--ccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~--~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
|+|+|-||+|||++|+.|++.+ +...+.++..++. ...|.....++.++..+..+.... .....||++|...
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNN 80 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S--
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCc
Confidence 8899999999999999999876 4555555544332 223433344666665554332221 1233566666544
No 361
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.18 E-value=0.02 Score=60.85 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=22.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 362
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.037 Score=55.22 Aligned_cols=173 Identities=17% Similarity=0.238 Sum_probs=89.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.-|.+.|++|+||||+|+.|+..++...+.+-+.+-- |.. . +... +. ....+=.|..+++.-+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y---Yk~-~-~~~~---~~---------~~~~~n~d~p~A~D~d 71 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY---YKD-Q-SHLP---FE---------ERNKINYDHPEAFDLD 71 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc---ccc-h-hhcC---Hh---------hcCCcCccChhhhcHH
Confidence 4577899999999999999999998653333332211 111 1 1110 00 1112223333333222
Q ss_pred hhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCC-CceEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG-DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~-~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
-....|..+++|+.+.+|--....+.+. ..+.+.-.++++|-. -.. +.+.-.+..++-.|+...
T Consensus 72 -------------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEG-i~~-l~d~~lr~~~d~kIfvdt 136 (218)
T COG0572 72 -------------LLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEG-ILL-LYDERLRDLMDLKIFVDT 136 (218)
T ss_pred -------------HHHHHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEec-ccc-cccHHHHhhcCEEEEEeC
Confidence 2667788888899888875443333333 455555666666553 322 223223345555666555
Q ss_pred hhhhh--------hcc-ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCC
Q 008723 485 PVRAN--------MRA-GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTA 533 (556)
Q Consensus 485 p~~~~--------~~~-~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ 533 (556)
+.... +.+ +.+.+.+-+++...+.+.. ..|+......-|.+++...
T Consensus 137 d~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~---~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 137 DADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMY---EQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred CccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhh---hhccCcccccceEEeecCC
Confidence 53111 111 4455555566665554422 1133444444566776664
No 363
>PRK14527 adenylate kinase; Provisional
Probab=96.18 E-value=0.0046 Score=59.75 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=26.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+.-+++.||||+||||+|+.||+.++...+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 356999999999999999999999986554
No 364
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.11 E-value=0.0083 Score=63.33 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=30.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
..|+|.|++|+|||||++.|++.++.+++.-.+.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5799999999999999999999999888755544433
No 365
>PLN02674 adenylate kinase
Probab=96.11 E-value=0.0052 Score=62.40 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=28.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l 361 (556)
...|+|.||||+||+|+|+.||+.++..++ ++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdl 65 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 65 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHH
Confidence 367999999999999999999999986554 44443
No 366
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.09 E-value=0.0092 Score=58.30 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-++|.||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999999999988774
No 367
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.08 E-value=0.018 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
+..+++.|+.|||||++.++|...+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 478999999999999999999988843
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.031 Score=60.22 Aligned_cols=27 Identities=41% Similarity=0.502 Sum_probs=23.5
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+..++|+||+|+||||++..||..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999764
No 369
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.0053 Score=58.07 Aligned_cols=33 Identities=33% Similarity=0.638 Sum_probs=29.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..+++.|++|+||||++++|+++++.+|++-+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 457999999999999999999999999887543
No 370
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.06 E-value=0.019 Score=55.83 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=29.0
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~ 360 (556)
.+..+.|+|++|+||||+|+.|+..+ +...+.++...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 45779999999999999999999987 33455565543
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.05 E-value=0.015 Score=56.06 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=24.1
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
....++|.||+|+||||++++|+..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 347899999999999999999998873
No 372
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.02 E-value=0.0055 Score=59.02 Aligned_cols=29 Identities=34% Similarity=0.586 Sum_probs=25.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
..++|.||+|+||||+++.|+..++.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46899999999999999999998876544
No 373
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.02 E-value=0.014 Score=56.81 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~ 360 (556)
..-++|+||||+|||++|..++... +...+.++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4778999999999999999988654 44566666643
No 374
>PRK04040 adenylate kinase; Provisional
Probab=96.01 E-value=0.0061 Score=59.31 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh--CCCee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPFV 354 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l--~~~fv 354 (556)
..|+|+|+|||||||+++.|++.+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 468999999999999999999999 55543
No 375
>PRK01184 hypothetical protein; Provisional
Probab=96.01 E-value=0.0061 Score=58.26 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=24.6
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|+|+||+||||+|+ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788888777544
No 376
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.98 E-value=0.039 Score=66.61 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=34.5
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC--Ceeeecccc
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATT 360 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~--~fv~i~~s~ 360 (556)
+.+.+..-...+..+.|+||+||||||+...|=+..+. -.+.+|..+
T Consensus 1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~d 1053 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVD 1053 (1228)
T ss_pred hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcc
Confidence 34556666677889999999999999999999887732 234444443
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.15 Score=55.48 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..|+|+||+|+||||++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999776
No 378
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.96 E-value=0.0059 Score=62.85 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=24.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-CCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-~~~fv~ 355 (556)
.-|+|.|+|||||||+|+.|++.+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 358899999999999999999998 554443
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.96 E-value=0.0068 Score=49.15 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.|++|+||||+++.|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999986
No 380
>PRK14526 adenylate kinase; Provisional
Probab=95.93 E-value=0.0074 Score=59.87 Aligned_cols=28 Identities=36% Similarity=0.687 Sum_probs=24.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
.++|.|+||+||||+|+.||+.++.+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4899999999999999999999876554
No 381
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.93 E-value=0.0052 Score=56.95 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=25.0
Q ss_pred EeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 330 L~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
|.||||+||||+|+.||+.++. ..++..+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 6899999999999999999975 445555444
No 382
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.93 E-value=0.016 Score=57.24 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
....++|+|+||+|||++|..+|... +...+.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34678999999999999999998654 5566666655
No 383
>PRK10867 signal recognition particle protein; Provisional
Probab=95.91 E-value=0.12 Score=56.88 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s 359 (556)
+..++|+|++|+||||++-.||..+ +.....+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5678999999999999888888655 4455555554
No 384
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.91 E-value=0.031 Score=65.11 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...++|.|+|||||||+++++.+.+
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998766
No 385
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.90 E-value=0.016 Score=62.45 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
..-++|.|+||+|||+++..+|..+ +.+.+.++..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3678999999999999999998665 3455555544
No 386
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.89 E-value=0.021 Score=59.62 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=46.0
Q ss_pred hHHHHHHHhhh---ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 264 PKEICKGLDKF---VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 264 p~el~~~Ld~~---VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
..++++.|.+. ++.+++..+.+..++...+........ .....+.... .+..|++.|++||||||
T Consensus 40 A~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~y-----------~~~~~i~~~~-~p~iIlI~G~sgsGKSt 107 (301)
T PRK04220 40 ASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEKY-----------LLWRRIRKSK-EPIIILIGGASGVGTST 107 (301)
T ss_pred HHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHHH-----------HHHHHHhcCC-CCEEEEEECCCCCCHHH
Confidence 34455555443 677777777777776543211110000 0000111111 23569999999999999
Q ss_pred HHHHHHHHhCCCe
Q 008723 341 LAKTLARHVNVPF 353 (556)
Q Consensus 341 lAraLA~~l~~~f 353 (556)
+|+.||+.++.+.
T Consensus 108 lA~~La~~l~~~~ 120 (301)
T PRK04220 108 IAFELASRLGIRS 120 (301)
T ss_pred HHHHHHHHhCCCE
Confidence 9999999998763
No 387
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.009 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-|.|.|+||+||||+|+.|+..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588899999999999999999985
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.87 E-value=0.0074 Score=55.78 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=25.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
+..++|.|+.|+||||++|.+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999753
No 389
>PRK06696 uridine kinase; Validated
Probab=95.86 E-value=0.0087 Score=59.43 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=29.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~ 362 (556)
.-|.+.|++|+||||+|+.|++.+ +.+.+.+...++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 568899999999999999999998 5566665555443
No 390
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.063 Score=63.22 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.1
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
..++|.||||+||||-.-.+.
T Consensus 66 ~vvii~getGsGKTTqlP~~l 86 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFL 86 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHH
Confidence 679999999999999664443
No 391
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.83 E-value=0.026 Score=62.23 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~ 360 (556)
...++|.|+||+|||+++..++... +.+.+.++..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3678999999999999999998765 45666666543
No 392
>PF13245 AAA_19: Part of AAA domain
Probab=95.82 E-value=0.013 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=18.0
Q ss_pred CcEEEeCCCCChhH-HHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKT-LLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKT-tlAraLA~~l 349 (556)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44566999999999 6666666665
No 393
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.023 Score=68.48 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=32.1
Q ss_pred hhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 313 AAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 313 ~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+.+.+....+++..+.|+|++||||||+.+.|++..+
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34456677777889999999999999999999998773
No 394
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.81 E-value=0.029 Score=51.99 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=19.0
Q ss_pred CcEEEeCCCCChhHH-HHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTL-LAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTt-lAraLA~~l 349 (556)
.++++.|++|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555554
No 395
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.80 E-value=0.017 Score=55.32 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
.+++.|+||+|||++|..++..++.+.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887766655543
No 396
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.80 E-value=0.054 Score=55.81 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=46.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
+..|+||.|..|+||++++|..|-..+..++.+..+. +|--.+-.+.++.++..+-. ..++.+++|+|-+
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~q 99 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQ 99 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCC
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcc
Confidence 3489999999999999999999988888888777542 23222223445555554432 2366788888765
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.80 E-value=0.026 Score=59.57 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=45.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCc---cc-----------cchHHHHHHHHHhcccch
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VG-----------EDVESILYKLLAQAEFNV 386 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgy---vG-----------~~~e~~l~~lf~~a~~~l 386 (556)
....++|+||||||||+||..++... +...+.+++....+..| .| ...+..+. .....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~----~~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALE----IAETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHH----HHHHHh
Confidence 34678899999999999998776544 55666666543221100 01 11122221 111122
Q ss_pred hccCCeEEEEecccccchh
Q 008723 387 EAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 387 ~~a~~~VLfLDEID~l~~~ 405 (556)
......+|+||-+..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 2345679999999988753
No 398
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.79 E-value=0.021 Score=66.33 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=30.0
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..|.|+|++||||||++|.+....
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445566666777889999999999999999999766
No 399
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.79 E-value=0.019 Score=58.29 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|.|+|++|+|||++|+.+++.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCH
T ss_pred eEEEEEEcCCcCCcceeeeecccc
Confidence 367999999999999999999977
No 400
>PRK14529 adenylate kinase; Provisional
Probab=95.76 E-value=0.0084 Score=60.08 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=25.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
.|+|.||||+||||+|+.||+.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4899999999999999999999987665
No 401
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.75 E-value=0.059 Score=54.91 Aligned_cols=90 Identities=24% Similarity=0.322 Sum_probs=50.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC---eeeeccccccccC----cc--c-cchHHHHHHHHHhcc----cchhc-cC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAG----YV--G-EDVESILYKLLAQAE----FNVEA-AQ 390 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~---fv~i~~s~l~~sg----yv--G-~~~e~~l~~lf~~a~----~~l~~-a~ 390 (556)
.-+.++|+.|+|||.++|++...++.. .+.++...+.... ++ . ......+........ ..+.. ..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 468899999999999999888777542 2233333222110 00 0 000011111111111 01112 24
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+-++++||.+.+..+ +.+.|..+.+
T Consensus 132 ~v~l~vdEah~L~~~--------------~le~Lrll~n 156 (269)
T COG3267 132 PVVLMVDEAHDLNDS--------------ALEALRLLTN 156 (269)
T ss_pred CeEEeehhHhhhChh--------------HHHHHHHHHh
Confidence 478999999988877 7777777765
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.15 Score=57.27 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=22.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
....++|+||+|+||||++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998654
No 403
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.73 E-value=0.044 Score=52.83 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEeCCCCChhHHHHHHHH
Q 008723 328 VLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA 346 (556)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.72 E-value=0.045 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-++|+||+|+||||+.|.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998543
No 405
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.048 Score=50.72 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=27.6
Q ss_pred cccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.+..-..+...+.|.|++|+||||+.++|+..+.
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444445567899999999999999999998763
No 406
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.69 E-value=0.017 Score=62.07 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|+||+|||||++++.|++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999877
No 407
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.62 E-value=0.011 Score=56.27 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+..|+|.|++|+||||+|+.|++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999885
No 408
>PLN02165 adenylate isopentenyltransferase
Probab=95.61 E-value=0.011 Score=62.52 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=29.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
+..++|.||+|+|||++|..||+.++..++..+..
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 35799999999999999999999998776655443
No 409
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.61 E-value=0.01 Score=58.36 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
+++.|+||+|||++.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999884
No 410
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.60 E-value=0.019 Score=62.30 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=43.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
.++|.||-.|||||+.+.+.+.+...++.++..++.... ....+........... ....||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~-----~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKER-----EKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhcc-----CCceEEEecccCch
Confidence 799999999999999999998885556666665554221 1111112222111111 44699999999754
No 411
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.59 E-value=0.031 Score=53.53 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=28.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l 361 (556)
+.-++|.|++|+||||+|+.|+..+ +...+.++...+
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 4678999999999999999999887 334455555443
No 412
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.58 E-value=0.014 Score=55.35 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
+..++|.|+||+||||+|+.|+..+ +..+..++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 4578999999999999999999988 3334445543
No 413
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.58 E-value=0.025 Score=56.28 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=26.5
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
..+..++++|+||+|||++|..++... +.+.+.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 345789999999999999999986543 444444444
No 414
>PLN02459 probable adenylate kinase
Probab=95.58 E-value=0.012 Score=60.21 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=25.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
.+++|.||||+||+|+|+.||+.++..++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 56899999999999999999999986654
No 415
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.56 E-value=0.064 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999986
No 416
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.54 E-value=0.012 Score=66.42 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=31.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.|.+|+||||+++.||+.++.+|+.+|..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ 40 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE 40 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 5699999999999999999999999999988753
No 417
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.51 E-value=0.013 Score=56.35 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=25.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
+..++|.|++|+||||+++.|+..++..+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~ 31 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKF 31 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 35689999999999999999999987643
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.48 E-value=0.012 Score=55.95 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
-++|.||+|+||||++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4889999999999999999998753
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.47 E-value=0.058 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.-++|+||.|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999974
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.44 E-value=0.058 Score=57.20 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+|++.|++|+||||+.++|...+.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998884
No 421
>PRK13975 thymidylate kinase; Provisional
Probab=95.43 E-value=0.023 Score=54.58 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=24.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
.-|+|.|++|+||||+|+.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999999753
No 422
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.43 E-value=0.036 Score=58.89 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|.||+|+||||+.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6799999999999999999998774
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.41 E-value=0.058 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999983
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.16 Score=55.77 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...++|.||+|+||||++..||..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998888654
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.34 E-value=0.026 Score=58.98 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=23.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++++.|++|+||||++++|...+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 47999999999999999999998773
No 426
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.33 E-value=0.048 Score=52.26 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.6
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
+|+.|++|+|||++|..++...+.+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998876666666444
No 427
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.32 E-value=0.016 Score=56.88 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
..+++.|.||+||||+|+.||+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 5689999999999999999999987644
No 428
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.32 E-value=0.017 Score=60.63 Aligned_cols=34 Identities=41% Similarity=0.621 Sum_probs=29.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.||+|+|||++|..||+.++..++..|..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 5689999999999999999999998877666553
No 429
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.30 E-value=0.057 Score=55.67 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=26.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
+..++|+||+|+||||++..||..+ +.....+++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4678899999999999999999776 444444443
No 430
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.28 E-value=0.087 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
+..++|+||.|+||||+.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35799999999999999999993
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.28 E-value=0.35 Score=53.14 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s 359 (556)
+..++|.|++|+||||+|..||..+ +.....+++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4678999999999999998888764 4455555555
No 432
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.25 E-value=0.13 Score=54.78 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.0
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+++++.|+|+-|+|||.|.-..-..+.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 34568999999999999999988888774
No 433
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.24 E-value=0.032 Score=60.61 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..|+|+|++|||||||+++||+.++...+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999998876543
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.19 E-value=0.074 Score=51.36 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=23.8
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+...+.|.||+|+||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345778899999999999999999876
No 435
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.19 E-value=0.049 Score=63.77 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc----c-c-cCccccchHHHHHHHHHh-cccchhccCCeEE
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL----T-Q-AGYVGEDVESILYKLLAQ-AEFNVEAAQQGMV 394 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l----~-~-sgyvG~~~e~~l~~lf~~-a~~~l~~a~~~VL 394 (556)
..-++|.|++||||||+++++...+ +..++-+..+.. + + .+....+ +..+... ...........+|
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~T----i~~~~~~~~~~~~~~~~~~ll 443 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRT----LASLEYAWANGRDLLSDKDVL 443 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceee----HHHHHhhhccCcccCCCCcEE
Confidence 4578999999999999999998665 444443322211 1 0 0111111 1111110 1111111245799
Q ss_pred EEecccccchh
Q 008723 395 YIDEVDKITKK 405 (556)
Q Consensus 395 fLDEID~l~~~ 405 (556)
+|||+-.+...
T Consensus 444 IvDEasMv~~~ 454 (744)
T TIGR02768 444 VIDEAGMVGSR 454 (744)
T ss_pred EEECcccCCHH
Confidence 99999987765
No 436
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.19 E-value=0.067 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
....++|.||.|+|||++.+.++..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999743
No 437
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.18 E-value=0.025 Score=60.18 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=43.0
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
+++.+.|.+++++.|...+... .. .....+.-++|.||+|+|||++++.|.+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~A-------A~------------------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSA-------AQ------------------GLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHH-------Hh------------------ccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4445899999999988866421 11 111234679999999999999999999877
Q ss_pred CCCeeee
Q 008723 350 NVPFVIA 356 (556)
Q Consensus 350 ~~~fv~i 356 (556)
.++++.+
T Consensus 114 ~y~~Y~l 120 (358)
T PF08298_consen 114 EYPIYTL 120 (358)
T ss_pred eEEEEEe
Confidence 2344444
No 438
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.16 E-value=0.053 Score=53.63 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=21.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...-+.|+|+||||||++|..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4577899999999999999999854
No 439
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.16 E-value=0.012 Score=55.22 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 334 TGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 334 pGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
||+||||+++.||+.++.+|+.+|..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH
Confidence 69999999999999999999988764
No 440
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.14 E-value=0.014 Score=64.67 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=28.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.-+||+||+||||||+.+.|++++|..+.+-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 56889999999999999999999998777544
No 441
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.14 E-value=0.018 Score=64.13 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=29.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
+|+|.|++|+||||+++.||+.++.+|+..+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 58999999999999999999999999986664
No 442
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.024 Score=62.34 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=64.4
Q ss_pred hhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCe
Q 008723 313 AAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQG 392 (556)
Q Consensus 313 ~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~ 392 (556)
.+..+++....++..+.|+||+|.||+|+.|.|-+.. +++...+. +.|.+.......-++..-+.+ .+.+
T Consensus 552 ~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-----dv~sGsI~---iDgqdIrnvt~~SLRs~IGVV--PQDt 621 (790)
T KOG0056|consen 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-----DVNSGSIT---IDGQDIRNVTQSSLRSSIGVV--PQDT 621 (790)
T ss_pred ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-----hccCceEE---EcCchHHHHHHHHHHHhcCcc--cCcc
Confidence 3456788888999999999999999999999998754 34443333 334443222222222222222 2567
Q ss_pred EEEEeccc----ccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCc
Q 008723 393 MVYIDEVD----KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGA 440 (556)
Q Consensus 393 VLfLDEID----~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~ 440 (556)
|||=|-|- -.-+.....++-...-...+.+.++++=||..+.+.|.|.
T Consensus 622 vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 622 VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc
Confidence 88877543 2111111111111101122445566666666666655543
No 443
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.13 E-value=0.089 Score=51.97 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=25.6
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeeccc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s 359 (556)
+.+..+|+.|+||||||++|..++... +.+.+.++..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 345889999999999999998766322 5555555443
No 444
>PRK13764 ATPase; Provisional
Probab=95.11 E-value=0.033 Score=63.36 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.++|+.||||+||||++++|+..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999998885
No 445
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.11 E-value=0.017 Score=56.07 Aligned_cols=24 Identities=54% Similarity=0.768 Sum_probs=22.2
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCC
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
|.|.|++|+||||+|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 679999999999999999999963
No 446
>PRK12338 hypothetical protein; Provisional
Probab=95.10 E-value=0.019 Score=60.48 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+..|++.|+||+||||+|+.||+.++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 357899999999999999999999987543
No 447
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.10 E-value=0.022 Score=54.65 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=25.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
|.|+|.+|+||||+++.+++ ++.+++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 78999999999999999999 776654 444444
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.10 E-value=0.018 Score=55.76 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=24.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
++..++|.||+|+||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346799999999999999999999875
No 449
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.09 E-value=0.14 Score=62.88 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred cccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 318 ~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.........++|.|+|||||||..=.+.-+.+
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~ 107 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTTQLPKICLELG 107 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC
Confidence 333334457899999999999998755554443
No 450
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.05 E-value=0.036 Score=54.93 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=18.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-+++.||+|||||++|-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999999888544
No 451
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.03 E-value=0.017 Score=54.81 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.0
Q ss_pred eCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 331 MGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 331 ~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|++||||||++++|+..++..++.-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987666443
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.02 E-value=0.021 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=22.6
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
++|.||+|+|||++++.|++.+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 78999999999999999999875443
No 453
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.01 E-value=0.069 Score=56.50 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=45.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCc---ccc-----------chHHHHHHHHHhcccch
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGE-----------DVESILYKLLAQAEFNV 386 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgy---vG~-----------~~e~~l~~lf~~a~~~l 386 (556)
...-+.++||||||||++|-.++... +...+.+++....+..| .|. +.+..+ .+ ....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l-~i---~~~li 129 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQAL-EI---ADSLV 129 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHH-HH---HHHHH
Confidence 34678899999999999998877544 55666666643211100 111 112221 11 11122
Q ss_pred hccCCeEEEEecccccch
Q 008723 387 EAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 387 ~~a~~~VLfLDEID~l~~ 404 (556)
......+|+||-+..+.+
T Consensus 130 ~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 130 RSGAVDLIVVDSVAALVP 147 (325)
T ss_pred hccCCCEEEEcchHhhcc
Confidence 234567999999998875
No 454
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.00 E-value=0.022 Score=56.74 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=27.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
.++|+||+|||||.+|-++|+..+.|++..|.-.+-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 478999999999999999999999999988776543
No 455
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.22 Score=50.70 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=75.1
Q ss_pred CcEEEeCCCC-ChhHHHHHHHHHHhCC---------Ceeeecccccc--ccCccccchHHHHHHHHHhcccchhccCCeE
Q 008723 326 SNVLLMGPTG-SGKTLLAKTLARHVNV---------PFVIADATTLT--QAGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (556)
Q Consensus 326 ~~vLL~GPpG-TGKTtlAraLA~~l~~---------~fv~i~~s~l~--~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~V 393 (556)
..+||.|..+ ++|..++..+++.+.. .++.+....-. ....++ .+.++++..........+...|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~---IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNIS---IEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCccc---HHHHHHHHHHHhhCcccCCcEE
Confidence 5699999998 9999999998887733 23333221100 001122 2345555554433333346679
Q ss_pred EEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEE-ecCCCcChHHHHH
Q 008723 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFI-CGGAFVDLEKTIS 472 (556)
Q Consensus 394 LfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I-~t~n~~dl~~~i~ 472 (556)
++|+++|.|... ..++||+.||+ ...+.+|| .|.+...+..+++
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLEE---------------------PP~~t~fILit~~~~~LLpTIr 137 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILED---------------------APKNSYIFLITSRAASIISTIR 137 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhcC---------------------CCCCeEEEEEeCChhhCchhHh
Confidence 999999999988 89999999994 12233444 4666667788888
Q ss_pred hccccccc
Q 008723 473 ERRQDSSI 480 (556)
Q Consensus 473 ~rr~~~~i 480 (556)
.|++.-.+
T Consensus 138 SRCq~i~~ 145 (263)
T PRK06581 138 SRCFKINV 145 (263)
T ss_pred hceEEEeC
Confidence 88875443
No 456
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.98 E-value=0.022 Score=55.62 Aligned_cols=23 Identities=52% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEeCCCCChhHHHHHHHHHHhC
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|.+.|+||+||||+|+.|++.+.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999983
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.97 E-value=0.018 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
.-++|.||+|+||||+++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 35899999999999999999987644
No 458
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.94 E-value=0.023 Score=58.23 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|.|++|+||||+.+++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5699999999999999999987764
No 459
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.93 E-value=0.068 Score=60.64 Aligned_cols=25 Identities=44% Similarity=0.497 Sum_probs=19.4
Q ss_pred cccccccccCCcEEEeCCCCChhHH
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
+.+-.+......|+++|++|+||||
T Consensus 362 ~~ll~~ir~n~vvvivgETGSGKTT 386 (1042)
T KOG0924|consen 362 DQLLSVIRENQVVVIVGETGSGKTT 386 (1042)
T ss_pred HHHHHHHhhCcEEEEEecCCCCchh
Confidence 3444455566889999999999997
No 460
>PRK09354 recA recombinase A; Provisional
Probab=94.92 E-value=0.074 Score=56.78 Aligned_cols=77 Identities=25% Similarity=0.278 Sum_probs=44.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCc---ccc-----------chHHHHHHHHHhcccch
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGE-----------DVESILYKLLAQAEFNV 386 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgy---vG~-----------~~e~~l~~lf~~a~~~l 386 (556)
....++|+||+|||||++|-.++... +...+.+++....+..| .|. ..+..+ ......+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l----~i~~~li 134 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQAL----EIADTLV 134 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHH----HHHHHHh
Confidence 34678899999999999998776443 55566666553221100 111 112221 1111122
Q ss_pred hccCCeEEEEecccccch
Q 008723 387 EAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 387 ~~a~~~VLfLDEID~l~~ 404 (556)
......+|+||-+-.+.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 233567999999998875
No 461
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.92 E-value=0.047 Score=61.98 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC----Ceeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~----~fv~i~~s~ 360 (556)
+..|+|+|.+|+||||+|++||+.++. +++.++...
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~ 431 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV 431 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH
Confidence 367999999999999999999999874 344455443
No 462
>PF13479 AAA_24: AAA domain
Probab=94.90 E-value=0.039 Score=54.50 Aligned_cols=20 Identities=55% Similarity=0.904 Sum_probs=18.6
Q ss_pred CcEEEeCCCCChhHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTL 345 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraL 345 (556)
..++|+|+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 57999999999999999888
No 463
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.87 E-value=0.021 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.4
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999997665555544
No 464
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.85 E-value=0.044 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.6
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
+.++|+||.|+||||+.|.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 465
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.84 E-value=0.027 Score=55.07 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=28.0
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
.|.|+|++|+||||+++.+++.+|.+++ ++.++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 4899999999999999999998887766 444443
No 466
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.84 E-value=0.03 Score=53.87 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=26.0
Q ss_pred EEEeCCCCChhHHHHHHHHHHhC---CCeeeeccccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTL 361 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s~l 361 (556)
|.+.|+||+||||+|+.|++.+. .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 78999999999999999999874 34444444433
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.45 Score=55.64 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4678999999999999999999655
No 468
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.81 E-value=0.53 Score=50.00 Aligned_cols=33 Identities=36% Similarity=0.707 Sum_probs=23.4
Q ss_pred CcEEEeCCCCChhHHHHHH-HH--HHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKT-LA--RHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAra-LA--~~l~~~fv~i~~ 358 (556)
..|++.||.|+|||++.-. |+ ++.+..|+.+..
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~L 85 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRL 85 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEE
Confidence 6799999999999987633 33 356666664443
No 469
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.81 E-value=0.22 Score=51.52 Aligned_cols=104 Identities=21% Similarity=0.176 Sum_probs=66.0
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
-+.++..+.+.+.+.|.....-.|..++...+.++ +......+-|+|.+++||||+
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~------------------------l~~~~~~~hl~G~Ss~GKTt~ 209 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSL------------------------LGVEGFGFHLYGQSSSGKTTA 209 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH------------------------hCCCceEEEEEeCCCCCHHHH
Confidence 36677777777777888777666666655443322 112346788999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
+++.+...|.|- .+..+ |.+.. ..+..... ......|+|||+....+.
T Consensus 210 ~~~a~Sv~G~p~------~l~~s-w~~T~--n~le~~a~-------~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 210 LQLAASVWGNPD------GLIRS-WNSTD--NGLERTAA-------AHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHhhhhCcCch------hhhhc-chhhH--HHHHHHHH-------HcCCcceEehhccccchh
Confidence 999999888775 22212 33222 12212111 125669999999865443
No 470
>PLN02840 tRNA dimethylallyltransferase
Probab=94.78 E-value=0.03 Score=61.09 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=28.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|+|.||+|+|||++|..||+.++..++.+|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 568999999999999999999999877766654
No 471
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.77 E-value=0.023 Score=55.58 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..|.|.|++|+||||++++|+..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999999999875
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.76 E-value=0.1 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..++|+||+|+||||++..||..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999877
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.76 E-value=0.024 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
|.|.||+|+||||+++.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 474
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.72 E-value=0.019 Score=52.34 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
...|+|.|+-|+||||++|.+++.++..
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999763
No 475
>PLN02348 phosphoribulokinase
Probab=94.72 E-value=0.14 Score=55.48 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
.-|.|.|++|+||||+|+.|++.++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45779999999999999999999864
No 476
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.022 Score=56.39 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=21.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l 349 (556)
-|+|+|+||+||||+|+-||++|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38899999999999999999998
No 477
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.67 E-value=0.035 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEeCCCCChhHHHHHHHHHHh
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l 349 (556)
|+|.|++|+||||+++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988
No 478
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.66 E-value=0.032 Score=57.99 Aligned_cols=32 Identities=38% Similarity=0.676 Sum_probs=27.9
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
|++.||+|+|||++|..||+.++..++.+|..
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 78999999999999999999998777666553
No 479
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.65 E-value=0.04 Score=60.07 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+||+.||||.||||+|++||+.+.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHH
Confidence 6899999999999999999999883
No 480
>PRK06761 hypothetical protein; Provisional
Probab=94.64 E-value=0.032 Score=57.87 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.-|+|.|+||+||||+++.|++.+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 45899999999999999999999976544444
No 481
>PRK08356 hypothetical protein; Provisional
Probab=94.57 E-value=0.035 Score=53.93 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=24.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
..|+|+||||+||||+|+.|++ .+.+ .+++.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4588999999999999999964 5654 344443
No 482
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=94.52 E-value=0.12 Score=63.22 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=67.8
Q ss_pred cCCcEEEeCCCCChhHHH-HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccch--------hc--cCCe
Q 008723 324 EKSNVLLMGPTGSGKTLL-AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV--------EA--AQQG 392 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtl-AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l--------~~--a~~~ 392 (556)
..+.++++||||+|||.+ +-+|-..+-..++.++.+..+.. +..+..+-+...... .+ .+..
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-------~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-------PSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-------HHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 458899999999999985 45666666667777777654422 445544444322210 11 2457
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHh--ccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE--g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
|||.|||+ |...++-. .. .+.-.|..+|| |..-.+ ... .+...+|++..++|+.
T Consensus 1566 VLFcDeIn-Lp~~~~y~--~~-----~vI~FlR~l~e~QGfw~s~---------~~~--wvTI~~i~l~Gacnp~ 1621 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY--PP-----TVIVFLRPLVERQGFWSSI---------AVS--WVTICGIILYGACNPG 1621 (3164)
T ss_pred EEEeeccC-CccccccC--CC-----ceEEeeHHHHHhcccccch---------hhh--HhhhcceEEEccCCCC
Confidence 99999999 65443221 11 15566778888 322221 112 2344566666666653
No 483
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.51 E-value=0.031 Score=54.26 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.-|+|.||+|+|||+|++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4669999999999999999998876
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.50 E-value=0.065 Score=62.02 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=27.9
Q ss_pred cccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.++.-..++..+.|+|++|+||||+++.|+..+
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444445567899999999999999999999776
No 485
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.47 E-value=0.18 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|+||...|||++.|.++-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 568999999999999999998544
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.47 E-value=0.04 Score=53.62 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=29.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh-CCCeeeeccccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADATTLTQ 363 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l-~~~fv~i~~s~l~~ 363 (556)
+.-++|.|+||+|||+++..+...+ ...++.++..++..
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 4567888999999999999999988 67788898887653
No 487
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.43 E-value=0.11 Score=50.85 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
...++|+|+||+|||++|..+|..+ +.+.+.++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4668899999999999999998765 445555544
No 488
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.42 E-value=0.029 Score=59.89 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=28.0
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.++++....++.-+.|.||+||||||+.|+||...
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555556668899999999999999999655
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.38 E-value=0.13 Score=56.77 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
..-++|.|+||+|||+++..++..+ +.+.+.++..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 4678999999999999999987655 3455555554
No 490
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.38 E-value=0.18 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
....+|.|+|||||||++..|...+
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678999999999999988776554
No 491
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.029 Score=52.81 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=23.6
Q ss_pred eCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 331 MGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 331 ~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|.+||||||++++||+.++..|++-|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGD 27 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGD 27 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceeccc
Confidence 489999999999999999998886443
No 492
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.35 E-value=0.18 Score=55.86 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=44.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee-ecccccccc---C--------ccccchHHHHHHHHHhcccchhccCCeE
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI-ADATTLTQA---G--------YVGEDVESILYKLLAQAEFNVEAAQQGM 393 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~-i~~s~l~~s---g--------yvG~~~e~~l~~lf~~a~~~l~~a~~~V 393 (556)
.=+|++||+|+||||+..++-+.++.+... +...|=++. + -+|-+....++.++++ .|-|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DPDv 330 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DPDV 330 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CCCe
Confidence 558889999999999999999888765442 222221111 1 1344545556555533 5679
Q ss_pred EEEeccccc
Q 008723 394 VYIDEVDKI 402 (556)
Q Consensus 394 LfLDEID~l 402 (556)
|++.||--.
T Consensus 331 ImVGEIRD~ 339 (500)
T COG2804 331 IMVGEIRDL 339 (500)
T ss_pred EEEeccCCH
Confidence 999999743
No 493
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.33 E-value=0.14 Score=56.61 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=25.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
+..|++.|++|+||||+|..||..++..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 5778999999999999999999999875
No 494
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.32 E-value=0.052 Score=51.31 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=25.7
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
+++.|+||+|||+++..+|..+ +...+.+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999999776 4455555554
No 495
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.31 E-value=0.031 Score=49.78 Aligned_cols=23 Identities=48% Similarity=0.588 Sum_probs=20.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+...++|.||+|+||||+++++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44679999999999999999987
No 496
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.30 E-value=0.093 Score=62.98 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=51.1
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---CccccchHHHHHHHHHhc-ccchhccCCeE
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQA-EFNVEAAQQGM 393 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG~~~e~~l~~lf~~a-~~~l~~a~~~V 393 (556)
+......++|.|.+||||||+.+++.+.+ +..++-+..+..... .-.|.. ...+..++... ..........+
T Consensus 358 il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~v 436 (988)
T PRK13889 358 VTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDV 436 (988)
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcE
Confidence 33334567899999999999998876654 544443333311100 001211 22233322110 00111224569
Q ss_pred EEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 394 LfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
|+|||+-.+... ....|++..+
T Consensus 437 lIVDEASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 437 LVIDEAGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred EEEECcccCCHH--------------HHHHHHHhhh
Confidence 999999987665 6667776554
No 497
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.28 E-value=0.088 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-+.|.|++|+||||+++.|+..+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999884
No 498
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.26 E-value=0.044 Score=53.38 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=26.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecccccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~ 362 (556)
.|.|+|++|+||||+++.+++ ++.++ +++..+.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~--i~~D~~~ 36 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPV--IDADAIA 36 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEE--EEecHHH
Confidence 589999999999999999998 77655 4444444
No 499
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.25 E-value=0.28 Score=53.19 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=20.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+++.+.|+||+|+||||..-.||..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 37889999999999997665555444
No 500
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.24 E-value=0.044 Score=52.74 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=24.7
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
|.|+|.+|+||||+++.+++..+.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 78999999999999999999876666543
Done!