Query 008723
Match_columns 556
No_of_seqs 362 out of 2991
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 6.9E-31 2.4E-35 274.7 16.6 271 261-552 3-274 (363)
2 1um8_A ATP-dependent CLP prote 100.0 3.1E-28 1.1E-32 255.5 20.5 285 259-552 7-291 (376)
3 1g41_A Heat shock protein HSLU 99.9 9.2E-26 3.1E-30 242.8 18.3 220 261-555 3-357 (444)
4 4b4t_J 26S protease regulatory 99.9 1.6E-22 5.5E-27 214.9 17.4 176 270-489 146-323 (405)
5 4b4t_I 26S protease regulatory 99.9 4.1E-22 1.4E-26 212.7 14.1 177 270-490 180-358 (437)
6 4b4t_L 26S protease subunit RP 99.9 1E-21 3.4E-26 211.2 14.4 177 270-490 179-357 (437)
7 4b4t_H 26S protease regulatory 99.9 1.1E-21 3.8E-26 211.2 14.7 177 270-490 207-385 (467)
8 4b4t_M 26S protease regulatory 99.9 1.8E-21 6.3E-26 209.0 13.8 177 270-490 179-357 (434)
9 4b4t_K 26S protease regulatory 99.8 1.1E-20 3.6E-25 202.8 17.1 176 270-489 170-348 (428)
10 1ofh_A ATP-dependent HSL prote 99.8 4.1E-20 1.4E-24 186.2 17.2 209 262-545 4-213 (310)
11 3cf2_A TER ATPase, transitiona 99.8 3.9E-20 1.3E-24 211.6 8.9 173 275-490 479-653 (806)
12 1r6b_X CLPA protein; AAA+, N-t 99.8 3E-18 1E-22 195.4 19.9 214 264-554 449-673 (758)
13 4fcw_A Chaperone protein CLPB; 99.8 5.7E-18 1.9E-22 171.3 19.4 215 264-554 8-236 (311)
14 3cf2_A TER ATPase, transitiona 99.8 5E-19 1.7E-23 202.5 10.7 173 271-490 203-377 (806)
15 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.1E-17 3.6E-22 172.9 19.6 217 270-548 10-228 (322)
16 3eie_A Vacuolar protein sortin 99.8 5.5E-18 1.9E-22 174.4 16.8 215 271-547 17-232 (322)
17 3syl_A Protein CBBX; photosynt 99.8 1E-17 3.5E-22 169.5 16.8 193 262-549 20-219 (309)
18 2qp9_X Vacuolar protein sortin 99.8 8.2E-18 2.8E-22 176.0 15.6 218 270-549 49-267 (355)
19 3cf0_A Transitional endoplasmi 99.7 6.5E-18 2.2E-22 172.4 13.1 173 271-489 14-190 (301)
20 3pxi_A Negative regulator of g 99.7 6.8E-17 2.3E-21 184.5 17.7 197 265-554 483-682 (758)
21 3vfd_A Spastin; ATPase, microt 99.7 9.4E-17 3.2E-21 169.3 16.9 172 271-489 114-286 (389)
22 1qvr_A CLPB protein; coiled co 99.7 1.4E-16 4.9E-21 184.2 18.9 212 267-554 552-777 (854)
23 2ce7_A Cell division protein F 99.7 1.9E-16 6.5E-21 172.1 17.1 175 270-489 14-190 (476)
24 2zan_A Vacuolar protein sortin 99.7 1.1E-16 3.8E-21 172.3 15.1 217 270-548 132-350 (444)
25 3h4m_A Proteasome-activating n 99.7 2.2E-16 7.6E-21 158.1 16.2 175 271-489 16-192 (285)
26 3d8b_A Fidgetin-like protein 1 99.7 2.9E-16 9.8E-21 164.2 17.5 215 275-549 86-301 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.7 4.8E-16 1.6E-20 156.7 17.2 216 271-546 20-236 (297)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.7 3.3E-16 1.1E-20 154.3 15.2 174 271-489 5-181 (262)
29 1lv7_A FTSH; alpha/beta domain 99.7 7.2E-16 2.5E-20 152.6 16.8 175 270-489 10-186 (257)
30 3t15_A Ribulose bisphosphate c 99.7 2.4E-16 8.2E-21 160.5 11.2 147 324-482 35-184 (293)
31 3hu3_A Transitional endoplasmi 99.6 5.7E-16 1.9E-20 169.0 13.0 167 275-489 206-376 (489)
32 3pfi_A Holliday junction ATP-d 99.6 3.4E-15 1.2E-19 153.2 17.3 170 270-547 27-197 (338)
33 2x8a_A Nuclear valosin-contain 99.6 6.8E-15 2.3E-19 148.7 16.4 220 270-551 8-234 (274)
34 3m6a_A ATP-dependent protease 99.6 2.1E-15 7.2E-20 166.4 12.3 156 263-465 71-234 (543)
35 2dhr_A FTSH; AAA+ protein, hex 99.6 1.6E-14 5.4E-19 157.9 16.3 175 270-489 29-205 (499)
36 1ypw_A Transitional endoplasmi 99.6 1.6E-16 5.5E-21 182.9 -0.1 173 275-490 479-653 (806)
37 2r62_A Cell division protease 99.6 4.4E-16 1.5E-20 154.8 2.3 174 271-489 10-187 (268)
38 2bjv_A PSP operon transcriptio 99.6 1.4E-14 4.8E-19 144.0 12.5 139 270-464 4-150 (265)
39 1ojl_A Transcriptional regulat 99.6 1.7E-14 5.7E-19 147.9 13.0 150 274-479 3-160 (304)
40 2r44_A Uncharacterized protein 99.5 5.2E-15 1.8E-19 151.8 7.4 176 265-546 19-197 (331)
41 2c9o_A RUVB-like 1; hexameric 99.5 9.9E-15 3.4E-19 157.4 9.3 105 275-409 39-145 (456)
42 1hqc_A RUVB; extended AAA-ATPa 99.5 8.6E-14 2.9E-18 141.4 15.3 137 271-465 11-148 (324)
43 1ixz_A ATP-dependent metallopr 99.5 1.6E-13 5.6E-18 135.4 16.1 175 270-489 14-190 (254)
44 1iy2_A ATP-dependent metallopr 99.5 1.4E-13 4.7E-18 138.2 15.8 175 270-489 38-214 (278)
45 3n70_A Transport activator; si 99.5 1.1E-14 3.7E-19 132.8 6.4 128 275-483 3-133 (145)
46 3pvs_A Replication-associated 99.5 4.8E-14 1.7E-18 152.1 12.4 105 270-429 24-131 (447)
47 1d2n_A N-ethylmaleimide-sensit 99.5 4.4E-14 1.5E-18 141.1 8.0 130 325-484 64-197 (272)
48 3u61_B DNA polymerase accessor 99.5 4.7E-13 1.6E-17 136.6 14.3 106 270-429 24-131 (324)
49 3uk6_A RUVB-like 2; hexameric 99.5 4.4E-13 1.5E-17 138.7 13.9 65 271-362 43-109 (368)
50 2chg_A Replication factor C sm 99.4 2.2E-12 7.5E-17 121.6 16.8 105 271-429 16-127 (226)
51 1jbk_A CLPB protein; beta barr 99.4 3.2E-13 1.1E-17 124.4 9.2 160 275-543 24-194 (195)
52 3dzd_A Transcriptional regulat 99.4 1.2E-12 4E-17 137.8 14.5 147 304-484 131-291 (368)
53 1ypw_A Transitional endoplasmi 99.4 4.3E-13 1.5E-17 154.4 11.5 173 270-489 202-376 (806)
54 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 9.7E-13 3.3E-17 143.8 13.6 123 264-435 13-140 (500)
55 1g8p_A Magnesium-chelatase 38 99.4 9.8E-13 3.3E-17 134.8 12.9 150 326-545 46-230 (350)
56 1ny5_A Transcriptional regulat 99.4 5.3E-12 1.8E-16 133.5 18.8 148 303-484 138-300 (387)
57 3co5_A Putative two-component 99.4 3.5E-14 1.2E-18 129.2 0.7 96 275-430 6-101 (143)
58 3f9v_A Minichromosome maintena 99.4 1.2E-13 4.1E-18 154.1 4.2 155 264-465 286-444 (595)
59 3te6_A Regulatory protein SIR3 99.4 5.7E-12 1.9E-16 130.3 15.5 173 273-553 20-217 (318)
60 1njg_A DNA polymerase III subu 99.3 2.9E-11 9.8E-16 114.9 17.4 111 275-429 25-151 (250)
61 1iqp_A RFCS; clamp loader, ext 99.3 1.1E-11 3.6E-16 125.3 14.4 107 271-429 24-135 (327)
62 1sxj_D Activator 1 41 kDa subu 99.3 8.4E-12 2.9E-16 127.8 10.5 106 271-430 36-159 (353)
63 2p65_A Hypothetical protein PF 99.3 5.4E-12 1.9E-16 116.3 8.0 118 271-429 21-149 (187)
64 2gno_A DNA polymerase III, gam 99.3 2.1E-11 7.2E-16 125.2 13.1 101 277-429 1-107 (305)
65 2chq_A Replication factor C sm 99.3 4.7E-12 1.6E-16 127.4 7.9 107 271-429 16-127 (319)
66 1jr3_A DNA polymerase III subu 99.3 5.9E-11 2E-15 122.4 16.3 106 271-429 15-144 (373)
67 1sxj_B Activator 1 37 kDa subu 99.3 2.7E-11 9.1E-16 122.1 13.0 105 271-429 20-132 (323)
68 3pxg_A Negative regulator of g 99.2 9.3E-12 3.2E-16 134.8 8.4 86 271-397 179-274 (468)
69 1in4_A RUVB, holliday junction 99.2 1.8E-10 6.3E-15 118.9 17.6 105 270-429 23-127 (334)
70 2qby_B CDC6 homolog 3, cell di 99.2 4.3E-11 1.5E-15 123.9 12.8 62 273-361 20-92 (384)
71 2v1u_A Cell division control p 99.2 3.4E-11 1.2E-15 124.0 11.8 102 274-405 20-145 (387)
72 1qvr_A CLPB protein; coiled co 99.2 2.2E-11 7.5E-16 141.0 11.4 118 270-429 168-296 (854)
73 1sxj_A Activator 1 95 kDa subu 99.2 2.4E-10 8.1E-15 125.1 17.9 126 270-429 37-176 (516)
74 1fnn_A CDC6P, cell division co 99.2 1.5E-10 5.1E-15 119.7 15.2 111 275-429 19-150 (389)
75 3pxi_A Negative regulator of g 99.2 1.9E-11 6.6E-16 139.5 8.9 86 271-397 179-274 (758)
76 1sxj_C Activator 1 40 kDa subu 99.2 1.2E-10 4.1E-15 120.1 13.9 106 270-429 23-135 (340)
77 1sxj_E Activator 1 40 kDa subu 99.2 2.2E-10 7.5E-15 117.8 15.0 47 271-349 13-60 (354)
78 1l8q_A Chromosomal replication 99.2 5.1E-11 1.7E-15 121.8 9.4 85 326-429 38-125 (324)
79 1r6b_X CLPA protein; AAA+, N-t 99.2 2.7E-11 9.2E-16 138.1 7.8 100 269-405 183-293 (758)
80 1a5t_A Delta prime, HOLB; zinc 99.2 6.9E-10 2.4E-14 114.6 17.3 85 326-429 25-133 (334)
81 3k1j_A LON protease, ATP-depen 99.1 2.4E-10 8.2E-15 127.4 13.4 44 275-351 43-86 (604)
82 3bos_A Putative DNA replicatio 99.0 5.2E-10 1.8E-14 107.4 9.7 77 325-429 52-131 (242)
83 2qby_A CDC6 homolog 1, cell di 99.0 9E-10 3.1E-14 113.1 11.7 115 275-429 22-157 (386)
84 2z4s_A Chromosomal replication 99.0 8.3E-10 2.8E-14 118.6 11.7 85 326-429 131-221 (440)
85 3f8t_A Predicted ATPase involv 99.0 2.9E-10 9.8E-15 122.8 6.7 140 264-465 205-349 (506)
86 1w5s_A Origin recognition comp 98.7 4.5E-08 1.5E-12 102.0 10.8 60 275-359 24-95 (412)
87 3ec2_A DNA replication protein 98.7 1.2E-08 4.1E-13 95.2 5.5 38 325-362 38-79 (180)
88 4akg_A Glutathione S-transfera 98.7 7.2E-08 2.5E-12 122.3 12.5 115 325-465 1267-1394(2695)
89 2qen_A Walker-type ATPase; unk 98.5 1.3E-06 4.3E-11 88.5 14.9 50 275-359 14-63 (350)
90 3cmw_A Protein RECA, recombina 98.4 4.7E-07 1.6E-11 110.7 11.5 160 265-430 1013-1203(1706)
91 2kjq_A DNAA-related protein; s 98.3 1.1E-06 3.6E-11 80.6 8.0 71 324-429 35-108 (149)
92 2w58_A DNAI, primosome compone 98.3 2.8E-07 9.7E-12 87.1 4.1 37 326-362 55-94 (202)
93 2fna_A Conserved hypothetical 98.3 7E-06 2.4E-10 83.0 14.4 35 326-360 31-65 (357)
94 1tue_A Replication protein E1; 98.1 2.7E-06 9.1E-11 82.8 5.7 79 326-437 59-137 (212)
95 4akg_A Glutathione S-transfera 98.1 1.5E-05 5.1E-10 101.5 13.5 67 326-405 646-712 (2695)
96 3vkg_A Dynein heavy chain, cyt 98.1 1.1E-05 3.7E-10 103.5 12.1 115 325-465 1304-1432(3245)
97 1u0j_A DNA replication protein 98.1 9E-06 3.1E-10 81.9 8.9 77 325-438 104-181 (267)
98 2qgz_A Helicase loader, putati 98.0 1.5E-06 5E-11 89.0 2.6 38 325-362 152-193 (308)
99 2vhj_A Ntpase P4, P4; non- hyd 97.9 1.3E-05 4.4E-10 82.9 6.7 74 325-406 123-198 (331)
100 1ye8_A Protein THEP1, hypothet 97.7 0.0003 1E-08 66.1 11.9 26 327-352 2-27 (178)
101 3vkg_A Dynein heavy chain, cyt 97.5 0.00049 1.7E-08 88.7 14.4 67 326-405 605-671 (3245)
102 3r20_A Cytidylate kinase; stru 97.5 6.1E-05 2.1E-09 74.3 5.0 91 325-417 9-106 (233)
103 3cmu_A Protein RECA, recombina 97.4 0.00015 5E-09 90.1 7.6 81 322-406 1424-1521(2050)
104 3vaa_A Shikimate kinase, SK; s 97.4 9.3E-05 3.2E-09 70.0 4.2 36 323-358 23-58 (199)
105 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.7E-09 68.1 4.2 34 325-358 5-38 (185)
106 1qhx_A CPT, protein (chloramph 97.3 0.00012 4.1E-09 67.2 4.1 34 326-359 4-37 (178)
107 4e22_A Cytidylate kinase; P-lo 97.2 0.0009 3.1E-08 66.0 9.2 32 324-355 26-57 (252)
108 1zuh_A Shikimate kinase; alpha 97.2 0.0002 6.8E-09 65.4 3.9 32 326-357 8-39 (168)
109 3kb2_A SPBC2 prophage-derived 97.2 0.00024 8.2E-09 64.4 4.3 32 327-358 3-34 (173)
110 1via_A Shikimate kinase; struc 97.2 0.0002 6.8E-09 66.0 3.7 32 326-357 5-36 (175)
111 1jr3_D DNA polymerase III, del 97.2 0.00028 9.5E-09 72.3 4.9 80 325-429 18-102 (343)
112 2iyv_A Shikimate kinase, SK; t 97.1 0.00026 8.9E-09 65.5 4.2 33 326-358 3-35 (184)
113 3upu_A ATP-dependent DNA helic 97.1 0.0014 4.8E-08 70.2 9.7 24 326-349 46-69 (459)
114 3iij_A Coilin-interacting nucl 97.1 0.00032 1.1E-08 64.8 4.0 32 325-356 11-42 (180)
115 1kag_A SKI, shikimate kinase I 97.1 0.00032 1.1E-08 64.0 3.8 31 326-356 5-35 (173)
116 1y63_A LMAJ004144AAA protein; 97.0 0.00033 1.1E-08 65.4 3.5 33 325-357 10-43 (184)
117 2rhm_A Putative kinase; P-loop 97.0 0.00036 1.2E-08 64.7 3.7 33 325-357 5-37 (193)
118 1e6c_A Shikimate kinase; phosp 96.9 0.00045 1.5E-08 62.9 3.7 32 326-357 3-34 (173)
119 2cdn_A Adenylate kinase; phosp 96.9 0.00052 1.8E-08 64.6 4.2 33 325-357 20-52 (201)
120 2c95_A Adenylate kinase 1; tra 96.9 0.00044 1.5E-08 64.2 3.5 33 325-357 9-41 (196)
121 3t61_A Gluconokinase; PSI-biol 96.9 0.00071 2.4E-08 63.7 4.8 33 325-357 18-50 (202)
122 1tev_A UMP-CMP kinase; ploop, 96.9 0.00046 1.6E-08 63.7 3.4 31 326-356 4-34 (196)
123 2pt5_A Shikimate kinase, SK; a 96.9 0.0006 2E-08 61.9 4.0 31 327-357 2-32 (168)
124 3lw7_A Adenylate kinase relate 96.9 0.00051 1.8E-08 61.8 3.5 30 326-356 2-31 (179)
125 2orw_A Thymidine kinase; TMTK, 96.9 0.00085 2.9E-08 63.3 5.0 24 326-349 4-27 (184)
126 3cm0_A Adenylate kinase; ATP-b 96.9 0.00043 1.5E-08 63.9 2.9 31 326-356 5-35 (186)
127 2ze6_A Isopentenyl transferase 96.9 0.00064 2.2E-08 67.2 4.3 33 327-359 3-35 (253)
128 2b8t_A Thymidine kinase; deoxy 96.8 0.0031 1.1E-07 61.6 8.9 31 326-356 13-46 (223)
129 1aky_A Adenylate kinase; ATP:A 96.8 0.00063 2.1E-08 65.0 3.8 32 325-356 4-35 (220)
130 1kht_A Adenylate kinase; phosp 96.8 0.00054 1.8E-08 63.1 3.0 25 326-350 4-28 (192)
131 2r2a_A Uncharacterized protein 96.8 0.001 3.6E-08 63.8 5.1 74 326-405 6-102 (199)
132 3dl0_A Adenylate kinase; phosp 96.8 0.00075 2.6E-08 64.1 3.9 30 327-356 2-31 (216)
133 2bwj_A Adenylate kinase 5; pho 96.8 0.00067 2.3E-08 63.1 3.5 32 325-356 12-43 (199)
134 3fb4_A Adenylate kinase; psych 96.8 0.00083 2.8E-08 63.7 4.1 30 327-356 2-31 (216)
135 1zak_A Adenylate kinase; ATP:A 96.7 0.00065 2.2E-08 65.0 3.2 31 326-356 6-36 (222)
136 2vli_A Antibiotic resistance p 96.7 0.00074 2.5E-08 62.0 3.3 29 326-354 6-34 (183)
137 3be4_A Adenylate kinase; malar 96.7 0.00086 3E-08 64.2 3.7 31 326-356 6-36 (217)
138 1knq_A Gluconate kinase; ALFA/ 96.7 0.00095 3.2E-08 61.1 3.9 31 325-355 8-38 (175)
139 1zd8_A GTP:AMP phosphotransfer 96.7 0.00076 2.6E-08 64.8 3.3 31 326-356 8-38 (227)
140 1qf9_A UMP/CMP kinase, protein 96.7 0.00081 2.8E-08 61.9 3.3 31 326-356 7-37 (194)
141 1ak2_A Adenylate kinase isoenz 96.7 0.00097 3.3E-08 64.5 3.9 32 325-356 16-47 (233)
142 3tlx_A Adenylate kinase 2; str 96.7 0.00074 2.5E-08 66.2 3.0 33 325-357 29-61 (243)
143 3e1s_A Exodeoxyribonuclease V, 96.6 0.0036 1.2E-07 69.4 8.4 25 325-349 204-228 (574)
144 1ly1_A Polynucleotide kinase; 96.6 0.00066 2.2E-08 61.9 2.1 30 326-355 3-33 (181)
145 1zp6_A Hypothetical protein AT 96.6 0.0008 2.7E-08 62.4 2.7 36 325-360 9-44 (191)
146 2ehv_A Hypothetical protein PH 96.6 0.0053 1.8E-07 58.9 8.6 25 322-346 27-51 (251)
147 1n0w_A DNA repair protein RAD5 96.6 0.0026 8.9E-08 60.9 6.4 26 323-348 22-47 (243)
148 2cvh_A DNA repair and recombin 96.6 0.0052 1.8E-07 57.8 8.4 36 324-359 19-54 (220)
149 3nwj_A ATSK2; P loop, shikimat 96.6 0.0008 2.8E-08 66.8 2.8 34 325-358 48-81 (250)
150 2fz4_A DNA repair protein RAD2 96.6 0.0064 2.2E-07 59.3 9.2 34 326-359 109-142 (237)
151 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.7E-08 62.3 3.5 32 326-357 16-47 (203)
152 4eun_A Thermoresistant glucoki 96.6 0.0014 4.7E-08 61.8 4.2 31 325-355 29-59 (200)
153 1e4v_A Adenylate kinase; trans 96.6 0.0013 4.3E-08 62.7 3.8 30 327-356 2-31 (214)
154 2p5t_B PEZT; postsegregational 96.5 0.0028 9.6E-08 62.3 6.2 37 325-361 32-68 (253)
155 1cke_A CK, MSSA, protein (cyti 96.5 0.0014 4.6E-08 62.5 3.8 30 326-355 6-35 (227)
156 1gvn_B Zeta; postsegregational 96.5 0.0029 1E-07 63.8 6.3 36 325-360 33-68 (287)
157 3hr8_A Protein RECA; alpha and 96.5 0.004 1.4E-07 65.1 7.3 78 323-404 59-153 (356)
158 2pez_A Bifunctional 3'-phospho 96.5 0.002 6.7E-08 59.4 4.3 37 325-361 5-44 (179)
159 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0043 1.5E-07 61.2 6.9 36 326-361 5-43 (260)
160 2pbr_A DTMP kinase, thymidylat 96.4 0.0022 7.4E-08 59.1 4.4 31 327-357 2-35 (195)
161 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.2E-08 60.2 3.8 29 327-355 2-30 (205)
162 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6E-08 62.4 3.8 28 327-354 2-29 (206)
163 3ake_A Cytidylate kinase; CMP 96.4 0.0021 7E-08 60.2 3.9 31 327-357 4-34 (208)
164 3kl4_A SRP54, signal recogniti 96.4 0.018 6.1E-07 61.7 11.7 35 324-358 96-133 (433)
165 2v54_A DTMP kinase, thymidylat 96.3 0.002 6.7E-08 60.2 3.6 33 325-357 4-37 (204)
166 2if2_A Dephospho-COA kinase; a 96.3 0.0018 6.1E-08 60.8 3.2 31 327-358 3-33 (204)
167 3umf_A Adenylate kinase; rossm 96.3 0.0018 6.3E-08 63.0 3.4 30 325-354 29-58 (217)
168 3zvl_A Bifunctional polynucleo 96.3 0.011 3.9E-07 62.6 9.7 32 324-355 257-288 (416)
169 2wwf_A Thymidilate kinase, put 96.3 0.0015 5.2E-08 61.4 2.6 32 325-356 10-41 (212)
170 2xb4_A Adenylate kinase; ATP-b 96.3 0.002 7E-08 62.0 3.5 30 327-356 2-31 (223)
171 1uf9_A TT1252 protein; P-loop, 96.3 0.002 6.9E-08 60.0 3.2 32 325-357 8-39 (203)
172 3uie_A Adenylyl-sulfate kinase 96.3 0.0025 8.5E-08 60.1 3.9 38 324-361 24-64 (200)
173 1jjv_A Dephospho-COA kinase; P 96.3 0.0021 7.1E-08 60.5 3.3 30 327-357 4-33 (206)
174 1nks_A Adenylate kinase; therm 96.2 0.0014 4.9E-08 60.2 2.0 24 327-350 3-26 (194)
175 3dm5_A SRP54, signal recogniti 96.2 0.035 1.2E-06 59.5 13.0 35 325-359 100-137 (443)
176 2z0h_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 58.1 4.3 29 328-356 3-34 (197)
177 3crm_A TRNA delta(2)-isopenten 96.2 0.0023 7.8E-08 66.0 3.3 34 326-359 6-39 (323)
178 2grj_A Dephospho-COA kinase; T 96.1 0.0028 9.6E-08 60.3 3.6 33 326-358 13-45 (192)
179 2bbw_A Adenylate kinase 4, AK4 96.1 0.0039 1.3E-07 60.7 4.4 30 325-354 27-56 (246)
180 1nn5_A Similar to deoxythymidy 96.1 0.002 6.8E-08 60.6 2.3 31 325-355 9-39 (215)
181 2zr9_A Protein RECA, recombina 96.0 0.0063 2.2E-07 63.2 6.0 78 323-404 59-153 (349)
182 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0025 8.6E-08 66.6 2.9 31 326-356 25-55 (359)
183 4a74_A DNA repair and recombin 96.0 0.0089 3E-07 56.5 6.5 26 324-349 24-49 (231)
184 2h92_A Cytidylate kinase; ross 96.0 0.0038 1.3E-07 59.2 3.8 32 326-357 4-35 (219)
185 3a8t_A Adenylate isopentenyltr 96.0 0.0027 9.1E-08 66.0 2.6 34 326-359 41-74 (339)
186 1uj2_A Uridine-cytidine kinase 96.0 0.0039 1.3E-07 61.0 3.7 28 326-353 23-50 (252)
187 2plr_A DTMP kinase, probable t 95.9 0.004 1.4E-07 58.2 3.5 27 326-352 5-31 (213)
188 1vht_A Dephospho-COA kinase; s 95.9 0.0039 1.3E-07 59.3 3.3 31 326-357 5-35 (218)
189 1q3t_A Cytidylate kinase; nucl 95.9 0.0049 1.7E-07 59.7 3.9 32 325-356 16-47 (236)
190 3fdi_A Uncharacterized protein 95.8 0.0055 1.9E-07 58.5 4.0 30 326-355 7-36 (201)
191 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.011 3.8E-07 60.8 6.1 26 325-350 171-196 (330)
192 3cmu_A Protein RECA, recombina 95.7 0.017 5.8E-07 72.0 8.4 83 321-407 1077-1176(2050)
193 2qor_A Guanylate kinase; phosp 95.7 0.0064 2.2E-07 57.4 3.7 26 325-350 12-37 (204)
194 1w36_D RECD, exodeoxyribonucle 95.6 0.025 8.6E-07 62.9 8.8 25 325-349 164-188 (608)
195 2yvu_A Probable adenylyl-sulfa 95.5 0.0068 2.3E-07 56.1 3.4 35 325-359 13-50 (186)
196 1ltq_A Polynucleotide kinase; 95.5 0.005 1.7E-07 61.4 2.5 32 326-357 3-35 (301)
197 2qt1_A Nicotinamide riboside k 95.5 0.0048 1.7E-07 58.1 2.2 30 326-355 22-52 (207)
198 1pzn_A RAD51, DNA repair and r 95.5 0.015 5E-07 60.3 5.9 30 320-349 126-155 (349)
199 1svm_A Large T antigen; AAA+ f 95.4 0.0076 2.6E-07 63.4 3.6 34 322-355 166-199 (377)
200 1kgd_A CASK, peripheral plasma 95.4 0.0085 2.9E-07 55.5 3.6 26 325-350 5-30 (180)
201 2jeo_A Uridine-cytidine kinase 95.4 0.0069 2.3E-07 59.0 3.1 38 315-352 15-52 (245)
202 3jvv_A Twitching mobility prot 95.4 0.016 5.6E-07 60.3 6.1 24 326-349 124-147 (356)
203 3exa_A TRNA delta(2)-isopenten 95.4 0.0073 2.5E-07 62.2 3.3 34 326-359 4-37 (322)
204 3foz_A TRNA delta(2)-isopenten 95.4 0.0074 2.5E-07 62.0 3.3 33 326-358 11-43 (316)
205 1u94_A RECA protein, recombina 95.4 0.024 8.3E-07 59.0 7.3 38 322-359 60-100 (356)
206 2z43_A DNA repair and recombin 95.4 0.016 5.3E-07 59.2 5.7 28 322-349 104-131 (324)
207 2j41_A Guanylate kinase; GMP, 95.4 0.0078 2.7E-07 56.1 3.1 25 325-349 6-30 (207)
208 3io5_A Recombination and repai 95.3 0.017 5.8E-07 59.6 5.6 77 327-404 30-125 (333)
209 3b9q_A Chloroplast SRP recepto 95.3 0.025 8.6E-07 57.5 6.8 26 324-349 99-124 (302)
210 2bdt_A BH3686; alpha-beta prot 95.3 0.011 3.7E-07 54.7 3.7 25 327-351 4-28 (189)
211 1ex7_A Guanylate kinase; subst 95.3 0.024 8.4E-07 53.7 6.2 28 326-353 2-29 (186)
212 3tr0_A Guanylate kinase, GMP k 95.3 0.01 3.5E-07 55.3 3.6 26 325-350 7-32 (205)
213 3d3q_A TRNA delta(2)-isopenten 95.2 0.0089 3E-07 62.1 3.4 33 326-358 8-40 (340)
214 3c8u_A Fructokinase; YP_612366 95.2 0.0094 3.2E-07 56.5 3.3 26 325-350 22-47 (208)
215 3tau_A Guanylate kinase, GMP k 95.2 0.0091 3.1E-07 56.7 3.2 27 324-350 7-33 (208)
216 1g5t_A COB(I)alamin adenosyltr 95.2 0.094 3.2E-06 50.2 10.2 78 325-402 28-132 (196)
217 2f6r_A COA synthase, bifunctio 95.2 0.0089 3E-07 59.9 3.1 30 326-356 76-105 (281)
218 1xp8_A RECA protein, recombina 95.1 0.019 6.7E-07 60.0 5.7 78 323-404 72-166 (366)
219 3asz_A Uridine kinase; cytidin 95.1 0.009 3.1E-07 56.2 2.8 25 326-350 7-31 (211)
220 1m7g_A Adenylylsulfate kinase; 95.1 0.012 4.2E-07 55.7 3.7 36 325-360 25-64 (211)
221 1z6g_A Guanylate kinase; struc 95.1 0.012 4.3E-07 56.4 3.6 32 318-349 16-47 (218)
222 1lvg_A Guanylate kinase, GMP k 95.0 0.013 4.3E-07 55.4 3.5 26 325-350 4-29 (198)
223 3a00_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 54.5 3.5 25 326-350 2-26 (186)
224 2qmh_A HPR kinase/phosphorylas 95.0 0.01 3.6E-07 57.2 2.8 38 321-359 30-67 (205)
225 1v5w_A DMC1, meiotic recombina 94.9 0.041 1.4E-06 56.6 7.3 27 322-348 119-145 (343)
226 2j37_W Signal recognition part 94.9 0.34 1.2E-05 52.7 14.7 34 325-358 101-137 (504)
227 2og2_A Putative signal recogni 94.8 0.037 1.3E-06 57.7 6.8 26 324-349 156-181 (359)
228 3lda_A DNA repair protein RAD5 94.8 0.036 1.2E-06 58.7 6.7 29 320-348 173-201 (400)
229 3eph_A TRNA isopentenyltransfe 94.8 0.013 4.3E-07 62.3 3.1 33 326-358 3-35 (409)
230 3hdt_A Putative kinase; struct 94.8 0.014 4.9E-07 56.7 3.2 30 326-355 15-44 (223)
231 1xx6_A Thymidine kinase; NESG, 94.8 0.072 2.4E-06 50.6 8.0 31 326-356 9-42 (191)
232 1vma_A Cell division protein F 94.8 0.095 3.2E-06 53.4 9.4 26 324-349 103-128 (306)
233 1zu4_A FTSY; GTPase, signal re 94.7 0.062 2.1E-06 55.0 7.9 36 323-358 103-141 (320)
234 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.023 7.8E-07 53.4 3.9 26 324-349 22-47 (235)
235 1htw_A HI0065; nucleotide-bind 94.5 0.017 5.7E-07 53.2 2.8 25 325-349 33-57 (158)
236 1x6v_B Bifunctional 3'-phospho 94.5 0.023 7.9E-07 63.6 4.4 37 325-361 52-91 (630)
237 3b6e_A Interferon-induced heli 94.5 0.034 1.2E-06 51.7 5.0 24 326-349 49-72 (216)
238 2yhs_A FTSY, cell division pro 94.4 0.04 1.4E-06 60.0 5.9 27 323-349 291-317 (503)
239 1znw_A Guanylate kinase, GMP k 94.4 0.022 7.7E-07 53.8 3.6 26 325-350 20-45 (207)
240 2axn_A 6-phosphofructo-2-kinas 94.4 0.038 1.3E-06 60.4 5.8 29 325-353 35-63 (520)
241 1bif_A 6-phosphofructo-2-kinas 94.4 0.066 2.3E-06 57.4 7.5 30 325-354 39-68 (469)
242 3e70_C DPA, signal recognition 94.3 0.067 2.3E-06 55.0 7.2 26 324-349 128-153 (328)
243 3gmt_A Adenylate kinase; ssgci 94.3 0.024 8.1E-07 55.7 3.6 31 326-356 9-39 (230)
244 2i1q_A DNA repair and recombin 94.3 0.034 1.1E-06 56.3 4.8 27 322-348 95-121 (322)
245 1rz3_A Hypothetical protein rb 94.3 0.033 1.1E-06 52.4 4.4 31 326-356 23-56 (201)
246 1gtv_A TMK, thymidylate kinase 94.3 0.011 3.9E-07 55.3 1.1 24 327-350 2-25 (214)
247 2j9r_A Thymidine kinase; TK1, 94.2 0.2 6.7E-06 48.6 9.8 32 326-357 29-63 (214)
248 3cmw_A Protein RECA, recombina 94.2 0.031 1.1E-06 68.9 4.9 83 322-404 729-824 (1706)
249 3ney_A 55 kDa erythrocyte memb 94.2 0.027 9.3E-07 53.9 3.6 27 324-350 18-44 (197)
250 4f4c_A Multidrug resistance pr 94.2 0.11 3.7E-06 63.0 9.6 35 316-350 435-469 (1321)
251 2v9p_A Replication protein E1; 94.1 0.022 7.6E-07 58.2 3.0 32 318-349 119-150 (305)
252 3lnc_A Guanylate kinase, GMP k 94.0 0.021 7E-07 54.9 2.3 28 323-350 25-53 (231)
253 4gp7_A Metallophosphoesterase; 93.8 0.027 9.3E-07 51.8 2.8 22 324-345 8-29 (171)
254 2a5y_B CED-4; apoptosis; HET: 93.8 0.2 6.9E-06 54.6 10.1 44 276-347 131-174 (549)
255 1g8f_A Sulfate adenylyltransfe 93.8 0.029 1E-06 61.2 3.4 27 325-351 395-421 (511)
256 2eyu_A Twitching motility prot 93.8 0.032 1.1E-06 55.4 3.4 26 324-349 24-49 (261)
257 1s96_A Guanylate kinase, GMP k 93.8 0.035 1.2E-06 53.7 3.5 27 324-350 15-41 (219)
258 4eaq_A DTMP kinase, thymidylat 93.7 0.034 1.2E-06 53.9 3.4 26 325-350 26-51 (229)
259 1a7j_A Phosphoribulokinase; tr 93.7 0.017 5.8E-07 58.3 1.2 25 326-350 6-30 (290)
260 1odf_A YGR205W, hypothetical 3 93.7 0.078 2.7E-06 53.5 6.1 25 326-350 32-56 (290)
261 1sky_E F1-ATPase, F1-ATP synth 93.7 0.056 1.9E-06 58.4 5.2 24 326-349 152-175 (473)
262 2dr3_A UPF0273 protein PH0284; 93.6 0.05 1.7E-06 51.8 4.4 35 323-357 21-58 (247)
263 1w4r_A Thymidine kinase; type 93.6 0.22 7.5E-06 47.6 8.8 33 326-358 21-56 (195)
264 2v3c_C SRP54, signal recogniti 93.6 0.086 2.9E-06 56.3 6.6 35 325-359 99-136 (432)
265 3tif_A Uncharacterized ABC tra 93.6 0.029 9.8E-07 54.8 2.5 36 314-349 20-55 (235)
266 2xxa_A Signal recognition part 93.6 0.28 9.5E-06 52.4 10.4 35 325-359 100-138 (433)
267 2i3b_A HCR-ntpase, human cance 93.4 0.047 1.6E-06 51.6 3.6 24 326-349 2-25 (189)
268 1cr0_A DNA primase/helicase; R 93.3 0.039 1.3E-06 55.0 3.0 34 316-349 26-59 (296)
269 1m8p_A Sulfate adenylyltransfe 93.3 0.051 1.7E-06 60.2 4.2 36 325-360 396-435 (573)
270 2pcj_A ABC transporter, lipopr 93.2 0.031 1.1E-06 54.1 2.1 36 314-349 19-54 (224)
271 2cbz_A Multidrug resistance-as 93.2 0.036 1.2E-06 54.1 2.6 36 314-349 20-55 (237)
272 1rj9_A FTSY, signal recognitio 93.0 0.24 8.1E-06 50.3 8.4 26 324-349 101-126 (304)
273 1b0u_A Histidine permease; ABC 93.0 0.039 1.3E-06 54.8 2.5 36 314-349 21-56 (262)
274 2d2e_A SUFC protein; ABC-ATPas 93.0 0.046 1.6E-06 53.8 3.0 35 314-348 18-52 (250)
275 1sgw_A Putative ABC transporte 92.9 0.042 1.4E-06 53.1 2.5 36 314-349 24-59 (214)
276 1g6h_A High-affinity branched- 92.9 0.042 1.4E-06 54.3 2.5 36 314-349 22-57 (257)
277 2zu0_C Probable ATP-dependent 92.9 0.049 1.7E-06 54.2 3.0 35 314-348 35-69 (267)
278 2ixe_A Antigen peptide transpo 92.8 0.035 1.2E-06 55.4 1.9 36 314-349 34-69 (271)
279 4g1u_C Hemin import ATP-bindin 92.8 0.041 1.4E-06 54.8 2.4 36 314-349 26-61 (266)
280 3aez_A Pantothenate kinase; tr 92.8 0.053 1.8E-06 55.3 3.3 27 324-350 89-115 (312)
281 3gfo_A Cobalt import ATP-bindi 92.8 0.042 1.4E-06 55.1 2.5 36 314-349 23-58 (275)
282 2gza_A Type IV secretion syste 92.8 0.031 1E-06 58.1 1.4 27 324-350 174-200 (361)
283 2pze_A Cystic fibrosis transme 92.8 0.045 1.5E-06 53.1 2.5 36 314-349 23-58 (229)
284 1ji0_A ABC transporter; ATP bi 92.7 0.044 1.5E-06 53.6 2.5 36 314-349 21-56 (240)
285 2ff7_A Alpha-hemolysin translo 92.7 0.044 1.5E-06 53.9 2.5 36 314-349 24-59 (247)
286 3kta_A Chromosome segregation 92.7 0.071 2.4E-06 48.7 3.6 26 325-350 26-51 (182)
287 1mv5_A LMRA, multidrug resista 92.6 0.043 1.5E-06 53.7 2.2 36 314-349 17-52 (243)
288 3vkw_A Replicase large subunit 92.6 0.16 5.5E-06 54.5 6.8 23 325-347 161-183 (446)
289 1lw7_A Transcriptional regulat 92.6 0.079 2.7E-06 54.7 4.3 27 325-351 170-196 (365)
290 1nlf_A Regulatory protein REPA 92.6 0.061 2.1E-06 53.2 3.3 27 323-349 28-54 (279)
291 2olj_A Amino acid ABC transpor 92.6 0.047 1.6E-06 54.4 2.5 36 314-349 39-74 (263)
292 2ghi_A Transport protein; mult 92.6 0.05 1.7E-06 54.0 2.6 36 314-349 35-70 (260)
293 1sq5_A Pantothenate kinase; P- 92.6 0.057 2E-06 54.6 3.1 26 325-350 80-105 (308)
294 4i1u_A Dephospho-COA kinase; s 92.6 0.066 2.3E-06 51.7 3.4 32 326-358 10-41 (210)
295 2ihy_A ABC transporter, ATP-bi 92.5 0.048 1.7E-06 54.7 2.4 36 314-349 36-71 (279)
296 2qi9_C Vitamin B12 import ATP- 92.5 0.052 1.8E-06 53.6 2.6 35 315-349 16-50 (249)
297 3fvq_A Fe(3+) IONS import ATP- 92.5 0.053 1.8E-06 56.7 2.7 36 314-349 19-54 (359)
298 2zts_A Putative uncharacterize 92.5 0.13 4.4E-06 48.9 5.3 37 322-358 27-67 (251)
299 1z47_A CYSA, putative ABC-tran 92.4 0.062 2.1E-06 56.0 3.1 36 314-349 30-65 (355)
300 3rlf_A Maltose/maltodextrin im 92.3 0.061 2.1E-06 56.6 3.0 36 314-349 18-53 (381)
301 1vpl_A ABC transporter, ATP-bi 92.3 0.054 1.9E-06 53.7 2.5 36 314-349 30-65 (256)
302 2yz2_A Putative ABC transporte 92.3 0.055 1.9E-06 53.8 2.5 36 314-349 22-57 (266)
303 3ly5_A ATP-dependent RNA helic 92.3 0.38 1.3E-05 47.0 8.6 19 326-344 92-110 (262)
304 4f4c_A Multidrug resistance pr 92.2 0.16 5.3E-06 61.6 6.8 35 315-349 1095-1129(1321)
305 2onk_A Molybdate/tungstate ABC 92.2 0.07 2.4E-06 52.3 3.0 34 315-349 15-48 (240)
306 1p5z_B DCK, deoxycytidine kina 92.1 0.032 1.1E-06 54.7 0.6 26 325-350 24-49 (263)
307 2nq2_C Hypothetical ABC transp 92.1 0.057 2E-06 53.3 2.4 36 314-349 20-55 (253)
308 3tqc_A Pantothenate kinase; bi 92.1 0.08 2.7E-06 54.4 3.4 25 326-350 93-117 (321)
309 3nh6_A ATP-binding cassette SU 92.0 0.041 1.4E-06 56.2 1.2 36 314-349 69-104 (306)
310 2it1_A 362AA long hypothetical 92.0 0.07 2.4E-06 55.7 3.0 36 314-349 18-53 (362)
311 2yyz_A Sugar ABC transporter, 92.0 0.072 2.5E-06 55.6 3.0 36 314-349 18-53 (359)
312 1p9r_A General secretion pathw 92.0 0.088 3E-06 56.0 3.8 25 326-350 168-192 (418)
313 2ocp_A DGK, deoxyguanosine kin 92.0 0.072 2.5E-06 51.4 2.9 25 326-350 3-27 (241)
314 2ewv_A Twitching motility prot 92.0 0.077 2.6E-06 55.4 3.3 25 325-349 136-160 (372)
315 3b85_A Phosphate starvation-in 92.0 0.072 2.5E-06 51.1 2.8 24 325-348 22-45 (208)
316 1v43_A Sugar-binding transport 91.9 0.073 2.5E-06 55.8 3.0 36 314-349 26-61 (372)
317 2f1r_A Molybdopterin-guanine d 91.9 0.055 1.9E-06 50.4 1.8 25 326-350 3-27 (171)
318 2xau_A PRE-mRNA-splicing facto 91.9 0.6 2E-05 53.4 10.8 22 326-347 110-131 (773)
319 1g29_1 MALK, maltose transport 91.9 0.074 2.5E-06 55.7 3.0 36 314-349 18-53 (372)
320 1t6n_A Probable ATP-dependent 91.8 0.89 3E-05 42.5 10.3 23 326-348 52-74 (220)
321 3d31_A Sulfate/molybdate ABC t 91.8 0.065 2.2E-06 55.7 2.4 36 314-349 15-50 (348)
322 3v9p_A DTMP kinase, thymidylat 91.8 0.086 2.9E-06 51.4 3.1 26 325-350 25-50 (227)
323 3cr8_A Sulfate adenylyltranfer 91.8 0.063 2.2E-06 59.2 2.4 26 325-350 369-394 (552)
324 2iut_A DNA translocase FTSK; n 91.7 1.2 4.1E-05 49.2 12.5 35 325-359 214-255 (574)
325 1c9k_A COBU, adenosylcobinamid 91.7 0.085 2.9E-06 49.8 2.9 32 328-360 2-33 (180)
326 4edh_A DTMP kinase, thymidylat 91.7 0.091 3.1E-06 50.5 3.2 26 325-350 6-31 (213)
327 2px0_A Flagellar biosynthesis 91.7 0.095 3.3E-06 53.0 3.5 26 324-349 104-129 (296)
328 2ffh_A Protein (FFH); SRP54, s 91.6 0.29 9.8E-06 52.2 7.3 35 324-358 97-134 (425)
329 1j8m_F SRP54, signal recogniti 91.6 0.18 6.3E-06 50.9 5.5 34 325-358 98-134 (297)
330 2oap_1 GSPE-2, type II secreti 91.6 0.051 1.7E-06 59.3 1.4 25 326-350 261-285 (511)
331 1z6t_A APAF-1, apoptotic prote 91.6 0.13 4.4E-06 56.0 4.6 44 275-347 126-169 (591)
332 3gd7_A Fusion complex of cysti 91.5 0.08 2.7E-06 55.8 2.8 36 314-349 36-71 (390)
333 3thx_B DNA mismatch repair pro 91.4 0.22 7.5E-06 58.1 6.5 25 324-348 672-696 (918)
334 1oxx_K GLCV, glucose, ABC tran 91.3 0.062 2.1E-06 55.9 1.7 36 314-349 20-55 (353)
335 1xjc_A MOBB protein homolog; s 91.2 0.12 4E-06 48.3 3.3 24 326-349 5-28 (169)
336 2pjz_A Hypothetical protein ST 91.2 0.084 2.9E-06 52.5 2.5 35 314-349 20-54 (263)
337 4b3f_X DNA-binding protein smu 91.2 0.19 6.7E-06 55.9 5.7 23 326-348 206-229 (646)
338 3tqf_A HPR(Ser) kinase; transf 91.1 0.1 3.4E-06 49.4 2.7 33 321-354 12-44 (181)
339 2bbs_A Cystic fibrosis transme 91.1 0.083 2.8E-06 53.4 2.3 36 314-349 53-88 (290)
340 2r8r_A Sensor protein; KDPD, P 91.1 0.17 5.9E-06 49.5 4.5 33 326-358 7-42 (228)
341 3lv8_A DTMP kinase, thymidylat 91.1 0.12 4E-06 50.7 3.3 25 325-349 27-51 (236)
342 1np6_A Molybdopterin-guanine d 90.9 0.13 4.5E-06 48.0 3.3 24 326-349 7-30 (174)
343 3sop_A Neuronal-specific septi 90.7 0.12 4E-06 51.6 3.0 24 326-349 3-26 (270)
344 3e2i_A Thymidine kinase; Zn-bi 90.7 0.26 8.7E-06 48.0 5.2 32 326-357 29-63 (219)
345 3tui_C Methionine import ATP-b 90.6 0.12 4.1E-06 54.1 3.0 36 314-349 43-78 (366)
346 3tmk_A Thymidylate kinase; pho 90.4 0.16 5.3E-06 49.2 3.5 27 325-351 5-31 (216)
347 2f9l_A RAB11B, member RAS onco 90.1 0.16 5.4E-06 47.0 3.1 24 326-349 6-29 (199)
348 2ged_A SR-beta, signal recogni 90.1 0.28 9.7E-06 44.5 4.8 25 325-349 48-72 (193)
349 3ld9_A DTMP kinase, thymidylat 90.0 0.17 5.7E-06 49.3 3.3 27 325-351 21-47 (223)
350 1oix_A RAS-related protein RAB 90.0 0.15 5.1E-06 47.1 2.8 24 326-349 30-53 (191)
351 2qm8_A GTPase/ATPase; G protei 89.9 0.16 5.6E-06 52.1 3.3 28 322-349 52-79 (337)
352 3thx_A DNA mismatch repair pro 89.8 0.47 1.6E-05 55.4 7.4 24 324-347 661-684 (934)
353 2wsm_A Hydrogenase expression/ 89.8 0.29 9.8E-06 45.8 4.7 25 326-350 31-55 (221)
354 2dyk_A GTP-binding protein; GT 89.8 0.17 5.6E-06 44.3 2.8 23 326-348 2-24 (161)
355 2dpy_A FLII, flagellum-specifi 89.8 0.21 7.3E-06 53.3 4.2 27 325-351 157-183 (438)
356 2fwr_A DNA repair protein RAD2 89.7 0.51 1.8E-05 49.7 7.1 34 326-359 109-142 (472)
357 2gks_A Bifunctional SAT/APS ki 89.7 0.21 7.2E-06 54.9 4.2 35 325-359 372-409 (546)
358 4tmk_A Protein (thymidylate ki 89.7 0.19 6.3E-06 48.4 3.3 24 326-349 4-27 (213)
359 4ag6_A VIRB4 ATPase, type IV s 89.6 0.28 9.6E-06 50.9 4.9 26 324-349 34-59 (392)
360 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.14 4.8E-06 55.1 2.6 25 325-349 138-162 (460)
361 2zj8_A DNA helicase, putative 89.5 1.5 5.2E-05 49.1 11.1 19 325-343 39-57 (720)
362 1tf7_A KAIC; homohexamer, hexa 89.5 0.16 5.5E-06 55.2 3.0 34 316-349 29-65 (525)
363 2obl_A ESCN; ATPase, hydrolase 89.5 0.23 7.9E-06 51.4 4.1 28 325-352 71-98 (347)
364 1nrj_B SR-beta, signal recogni 89.4 0.21 7.2E-06 46.6 3.4 25 325-349 12-36 (218)
365 1z2a_A RAS-related protein RAB 89.3 0.21 7.1E-06 43.9 3.1 23 326-348 6-28 (168)
366 2lkc_A Translation initiation 89.1 0.25 8.6E-06 44.0 3.6 23 325-347 8-30 (178)
367 1u8z_A RAS-related protein RAL 89.0 0.2 6.9E-06 43.8 2.8 23 326-348 5-27 (168)
368 3bh0_A DNAB-like replicative h 89.0 0.35 1.2E-05 49.0 4.9 30 320-349 63-92 (315)
369 1wp9_A ATP-dependent RNA helic 89.0 0.75 2.6E-05 47.2 7.6 32 327-358 25-60 (494)
370 2ce2_X GTPase HRAS; signaling 88.9 0.21 7.2E-06 43.4 2.8 23 326-348 4-26 (166)
371 1kao_A RAP2A; GTP-binding prot 88.9 0.21 7.1E-06 43.6 2.8 23 326-348 4-26 (167)
372 1hv8_A Putative ATP-dependent 88.7 0.6 2.1E-05 46.5 6.5 23 326-348 45-67 (367)
373 3p32_A Probable GTPase RV1496/ 88.7 0.32 1.1E-05 50.1 4.5 25 325-349 79-103 (355)
374 3b5x_A Lipid A export ATP-bind 88.7 0.19 6.6E-06 55.3 3.0 35 315-349 359-393 (582)
375 3hjn_A DTMP kinase, thymidylat 88.7 0.35 1.2E-05 45.7 4.4 27 328-354 3-32 (197)
376 2vp4_A Deoxynucleoside kinase; 88.6 0.13 4.3E-06 49.5 1.3 24 325-348 20-43 (230)
377 2zej_A Dardarin, leucine-rich 88.5 0.2 6.7E-06 45.7 2.5 22 326-347 3-24 (184)
378 1ls1_A Signal recognition part 88.4 0.36 1.2E-05 48.6 4.5 26 324-349 97-122 (295)
379 1ek0_A Protein (GTP-binding pr 88.3 0.26 9E-06 43.2 3.1 24 326-349 4-27 (170)
380 2wji_A Ferrous iron transport 88.3 0.25 8.5E-06 44.2 3.0 22 326-347 4-25 (165)
381 4hlc_A DTMP kinase, thymidylat 88.3 0.27 9.1E-06 46.9 3.3 23 328-350 5-27 (205)
382 1z0j_A RAB-22, RAS-related pro 88.3 0.27 9.1E-06 43.3 3.1 24 326-349 7-30 (170)
383 1upt_A ARL1, ADP-ribosylation 88.1 0.28 9.7E-06 43.2 3.2 23 325-347 7-29 (171)
384 2v6i_A RNA helicase; membrane, 88.0 0.86 2.9E-05 48.0 7.4 17 326-342 3-19 (431)
385 2nzj_A GTP-binding protein REM 88.0 0.27 9.1E-06 43.6 2.9 22 326-347 5-26 (175)
386 1z08_A RAS-related protein RAB 87.9 0.29 9.8E-06 43.2 3.1 23 326-348 7-29 (170)
387 1ky3_A GTP-binding protein YPT 87.9 0.29 9.9E-06 43.6 3.1 23 326-348 9-31 (182)
388 1wms_A RAB-9, RAB9, RAS-relate 87.8 0.29 9.9E-06 43.5 3.1 23 326-348 8-30 (177)
389 2gk6_A Regulator of nonsense t 87.8 0.27 9.4E-06 54.6 3.5 24 326-349 196-219 (624)
390 2wjg_A FEOB, ferrous iron tran 87.8 0.28 9.4E-06 44.3 2.9 23 326-348 8-30 (188)
391 3b60_A Lipid A export ATP-bind 87.7 0.18 6E-06 55.6 1.8 35 315-349 359-393 (582)
392 1r2q_A RAS-related protein RAB 87.6 0.31 1.1E-05 42.7 3.1 23 326-348 7-29 (170)
393 3bc1_A RAS-related protein RAB 87.6 0.3 1E-05 43.9 3.1 23 326-348 12-34 (195)
394 2r6a_A DNAB helicase, replicat 87.6 0.65 2.2E-05 49.4 6.2 38 320-357 198-239 (454)
395 1c1y_A RAS-related protein RAP 87.6 0.31 1.1E-05 42.7 3.1 23 326-348 4-26 (167)
396 2p6r_A Afuhel308 helicase; pro 87.6 1.2 4E-05 49.9 8.5 20 325-344 40-59 (702)
397 1g16_A RAS-related protein SEC 87.6 0.28 9.7E-06 43.1 2.8 23 326-348 4-26 (170)
398 1wb9_A DNA mismatch repair pro 87.6 0.45 1.6E-05 54.6 5.2 26 324-349 606-631 (800)
399 2erx_A GTP-binding protein DI- 87.5 0.29 1E-05 43.0 2.9 22 326-347 4-25 (172)
400 1gm5_A RECG; helicase, replica 87.5 1.1 3.7E-05 51.3 8.3 21 326-346 390-410 (780)
401 3q85_A GTP-binding protein REM 87.4 0.3 1E-05 43.0 2.9 20 327-346 4-23 (169)
402 1r8s_A ADP-ribosylation factor 87.3 0.33 1.1E-05 42.6 3.1 22 327-348 2-23 (164)
403 1yqt_A RNAse L inhibitor; ATP- 87.3 0.3 1E-05 53.5 3.4 29 321-349 43-71 (538)
404 2p67_A LAO/AO transport system 87.2 0.69 2.4E-05 47.3 5.9 26 324-349 55-80 (341)
405 1z0f_A RAB14, member RAS oncog 87.2 0.34 1.2E-05 43.0 3.1 24 326-349 16-39 (179)
406 2gj8_A MNME, tRNA modification 87.2 0.27 9.3E-06 44.5 2.5 23 326-348 5-27 (172)
407 2a9k_A RAS-related protein RAL 87.1 0.34 1.2E-05 43.3 3.1 23 326-348 19-41 (187)
408 3con_A GTPase NRAS; structural 87.1 0.34 1.2E-05 43.9 3.1 23 326-348 22-44 (190)
409 3euj_A Chromosome partition pr 87.0 0.33 1.1E-05 52.6 3.5 31 318-349 23-53 (483)
410 2orv_A Thymidine kinase; TP4A 87.0 2.2 7.5E-05 41.8 9.0 32 326-357 20-54 (234)
411 3q72_A GTP-binding protein RAD 87.0 0.32 1.1E-05 42.8 2.8 21 326-346 3-23 (166)
412 2c9o_A RUVB-like 1; hexameric 86.9 0.39 1.3E-05 51.1 3.9 25 391-429 296-320 (456)
413 1tf7_A KAIC; homohexamer, hexa 86.9 0.32 1.1E-05 52.8 3.3 25 325-349 281-305 (525)
414 1ewq_A DNA mismatch repair pro 86.8 0.6 2E-05 53.4 5.6 25 325-349 576-600 (765)
415 1yrb_A ATP(GTP)binding protein 86.7 0.53 1.8E-05 45.3 4.5 32 326-357 15-48 (262)
416 1dek_A Deoxynucleoside monopho 86.7 0.29 1E-05 48.1 2.6 27 327-353 3-29 (241)
417 2fn4_A P23, RAS-related protei 86.7 0.33 1.1E-05 43.1 2.8 23 326-348 10-32 (181)
418 4dsu_A GTPase KRAS, isoform 2B 86.7 0.37 1.2E-05 43.3 3.1 24 326-349 5-28 (189)
419 2y8e_A RAB-protein 6, GH09086P 86.7 0.34 1.2E-05 43.0 2.8 23 326-348 15-37 (179)
420 3qf4_B Uncharacterized ABC tra 86.6 0.21 7.1E-06 55.3 1.7 35 315-349 371-405 (598)
421 3clv_A RAB5 protein, putative; 86.5 0.37 1.3E-05 43.4 3.1 23 326-348 8-30 (208)
422 3tw8_B RAS-related protein RAB 86.5 0.34 1.2E-05 43.1 2.7 22 326-347 10-31 (181)
423 2yl4_A ATP-binding cassette SU 86.5 0.19 6.3E-06 55.6 1.2 34 316-349 361-394 (595)
424 1m2o_B GTP-binding protein SAR 86.5 0.36 1.2E-05 44.3 2.9 23 325-347 23-45 (190)
425 3t1o_A Gliding protein MGLA; G 86.5 0.38 1.3E-05 43.4 3.1 24 326-349 15-38 (198)
426 2oil_A CATX-8, RAS-related pro 86.5 0.38 1.3E-05 43.7 3.1 23 326-348 26-48 (193)
427 2hxs_A RAB-26, RAS-related pro 86.4 0.36 1.2E-05 42.9 2.9 22 326-347 7-28 (178)
428 2efe_B Small GTP-binding prote 86.4 0.39 1.3E-05 42.9 3.1 23 326-348 13-35 (181)
429 2wjy_A Regulator of nonsense t 86.3 0.56 1.9E-05 53.8 5.1 24 326-349 372-395 (800)
430 3kkq_A RAS-related protein M-R 86.3 0.4 1.4E-05 43.0 3.1 24 325-348 18-41 (183)
431 2g6b_A RAS-related protein RAB 86.2 0.41 1.4E-05 42.7 3.1 23 326-348 11-33 (180)
432 1f2t_A RAD50 ABC-ATPase; DNA d 86.1 0.45 1.5E-05 42.8 3.3 26 324-349 22-47 (149)
433 1m7b_A RND3/RHOE small GTP-bin 86.1 0.37 1.3E-05 43.6 2.8 23 326-348 8-30 (184)
434 2bme_A RAB4A, RAS-related prot 86.0 0.38 1.3E-05 43.2 2.8 23 326-348 11-33 (186)
435 2hf9_A Probable hydrogenase ni 85.9 0.4 1.4E-05 45.0 3.0 24 326-349 39-62 (226)
436 1mh1_A RAC1; GTP-binding, GTPa 85.9 0.43 1.5E-05 42.7 3.1 23 326-348 6-28 (186)
437 1svi_A GTP-binding protein YSX 85.8 0.4 1.4E-05 43.5 2.9 23 325-347 23-45 (195)
438 1pui_A ENGB, probable GTP-bind 85.8 0.2 6.9E-06 46.3 0.9 24 324-347 25-48 (210)
439 3tkl_A RAS-related protein RAB 85.8 0.44 1.5E-05 43.2 3.1 24 326-349 17-40 (196)
440 3sfz_A APAF-1, apoptotic pepti 85.7 0.55 1.9E-05 55.0 4.7 45 275-348 126-170 (1249)
441 3bwd_D RAC-like GTP-binding pr 85.7 0.5 1.7E-05 42.2 3.4 24 325-348 8-31 (182)
442 2h57_A ADP-ribosylation factor 85.7 0.28 9.7E-06 44.6 1.8 24 325-348 21-44 (190)
443 3ch4_B Pmkase, phosphomevalona 85.6 0.54 1.9E-05 45.1 3.8 28 324-351 10-37 (202)
444 2cxx_A Probable GTP-binding pr 85.6 0.37 1.3E-05 43.3 2.6 22 327-348 3-24 (190)
445 2gf9_A RAS-related protein RAB 85.5 0.46 1.6E-05 43.2 3.1 23 326-348 23-45 (189)
446 3pqc_A Probable GTP-binding pr 85.5 0.43 1.5E-05 43.0 2.9 24 325-348 23-46 (195)
447 2qag_B Septin-6, protein NEDD5 85.5 0.31 1.1E-05 52.0 2.2 25 324-348 39-65 (427)
448 4a82_A Cystic fibrosis transme 85.4 0.18 6.1E-06 55.5 0.4 35 315-349 357-391 (578)
449 1x3s_A RAS-related protein RAB 85.4 0.47 1.6E-05 42.9 3.1 24 325-348 15-38 (195)
450 2o8b_B DNA mismatch repair pro 85.4 0.85 2.9E-05 53.8 6.1 22 325-346 789-810 (1022)
451 2bov_A RAla, RAS-related prote 85.3 0.47 1.6E-05 43.4 3.1 24 325-348 14-37 (206)
452 3qf4_A ABC transporter, ATP-bi 85.1 0.22 7.4E-06 55.1 0.8 35 315-349 359-393 (587)
453 2eyq_A TRCF, transcription-rep 85.1 3 0.0001 49.7 10.7 21 326-346 625-645 (1151)
454 1vg8_A RAS-related protein RAB 85.1 0.48 1.7E-05 43.4 3.1 24 326-349 9-32 (207)
455 2qu8_A Putative nucleolar GTP- 85.1 0.46 1.6E-05 44.9 3.0 24 324-347 28-51 (228)
456 2atv_A RERG, RAS-like estrogen 85.0 0.49 1.7E-05 43.3 3.1 24 325-348 28-51 (196)
457 3ihw_A Centg3; RAS, centaurin, 85.0 0.49 1.7E-05 43.2 3.1 24 325-348 20-43 (184)
458 2a5j_A RAS-related protein RAB 84.8 0.51 1.8E-05 43.0 3.1 23 326-348 22-44 (191)
459 1z06_A RAS-related protein RAB 84.8 0.51 1.7E-05 42.8 3.1 23 326-348 21-43 (189)
460 3c5c_A RAS-like protein 12; GD 84.8 0.51 1.7E-05 43.1 3.1 23 326-348 22-44 (187)
461 2p5s_A RAS and EF-hand domain 84.8 0.51 1.8E-05 43.3 3.1 24 325-348 28-51 (199)
462 3t5g_A GTP-binding protein RHE 84.8 0.48 1.6E-05 42.4 2.8 22 326-347 7-28 (181)
463 1zd9_A ADP-ribosylation factor 84.7 0.52 1.8E-05 42.9 3.1 24 325-348 22-45 (188)
464 3k53_A Ferrous iron transport 84.7 0.41 1.4E-05 47.0 2.6 23 326-348 4-26 (271)
465 2www_A Methylmalonic aciduria 84.7 1.6 5.5E-05 44.8 7.2 25 325-349 74-98 (349)
466 3dz8_A RAS-related protein RAB 84.7 0.48 1.6E-05 43.2 2.8 25 325-349 23-47 (191)
467 1vt4_I APAF-1 related killer D 84.7 0.73 2.5E-05 54.6 5.0 43 275-347 130-172 (1221)
468 2v1x_A ATP-dependent DNA helic 84.6 1.3 4.5E-05 48.9 6.9 21 326-346 60-80 (591)
469 3reg_A RHO-like small GTPase; 84.6 0.53 1.8E-05 42.9 3.1 24 326-349 24-47 (194)
470 2fg5_A RAB-22B, RAS-related pr 84.6 0.48 1.6E-05 43.3 2.8 23 326-348 24-46 (192)
471 2yv5_A YJEQ protein; hydrolase 84.5 0.52 1.8E-05 47.5 3.3 24 325-349 165-188 (302)
472 1zbd_A Rabphilin-3A; G protein 84.5 0.51 1.7E-05 43.3 2.9 23 326-348 9-31 (203)
473 2iwr_A Centaurin gamma 1; ANK 84.4 0.4 1.4E-05 42.8 2.2 23 326-348 8-30 (178)
474 2rcn_A Probable GTPase ENGC; Y 84.4 0.52 1.8E-05 49.1 3.2 26 324-349 214-239 (358)
475 3ice_A Transcription terminati 84.3 0.56 1.9E-05 49.7 3.5 25 325-349 174-198 (422)
476 3bk7_A ABC transporter ATP-bin 84.3 0.36 1.2E-05 53.7 2.2 28 322-349 114-141 (607)
477 2fh5_B SR-beta, signal recogni 84.2 0.58 2E-05 43.4 3.2 24 326-349 8-31 (214)
478 1ko7_A HPR kinase/phosphatase; 84.1 0.47 1.6E-05 48.5 2.8 33 321-354 140-172 (314)
479 4a1f_A DNAB helicase, replicat 84.1 0.61 2.1E-05 48.1 3.6 36 321-356 42-80 (338)
480 3oes_A GTPase rhebl1; small GT 84.1 0.51 1.8E-05 43.4 2.8 25 325-349 24-48 (201)
481 2gf0_A GTP-binding protein DI- 84.1 0.52 1.8E-05 42.8 2.8 23 326-348 9-31 (199)
482 1ksh_A ARF-like protein 2; sma 84.1 0.51 1.7E-05 42.5 2.7 23 325-347 18-40 (186)
483 3lxx_A GTPase IMAP family memb 84.0 0.52 1.8E-05 45.0 2.9 24 325-348 29-52 (239)
484 3cph_A RAS-related protein SEC 84.0 0.58 2E-05 43.1 3.1 23 326-348 21-43 (213)
485 1tq4_A IIGP1, interferon-induc 83.9 0.33 1.1E-05 51.5 1.6 25 325-349 69-93 (413)
486 2bcg_Y Protein YP2, GTP-bindin 83.9 0.53 1.8E-05 43.3 2.8 23 326-348 9-31 (206)
487 1knx_A Probable HPR(Ser) kinas 83.9 0.41 1.4E-05 49.0 2.2 35 319-354 141-175 (312)
488 1moz_A ARL1, ADP-ribosylation 83.8 0.36 1.2E-05 43.3 1.6 22 325-346 18-39 (183)
489 1qhl_A Protein (cell division 83.8 0.27 9.1E-06 47.9 0.7 24 327-350 29-52 (227)
490 1e9r_A Conjugal transfer prote 83.7 0.65 2.2E-05 48.7 3.7 34 325-358 53-89 (437)
491 1f6b_A SAR1; gtpases, N-termin 83.7 0.44 1.5E-05 44.1 2.2 23 325-347 25-47 (198)
492 2xgj_A ATP-dependent RNA helic 83.7 6.5 0.00022 46.2 12.5 19 326-344 102-120 (1010)
493 2q6t_A DNAB replication FORK h 83.6 0.58 2E-05 49.6 3.3 37 322-358 197-237 (444)
494 1gwn_A RHO-related GTP-binding 83.5 0.56 1.9E-05 43.8 2.8 23 326-348 29-51 (205)
495 2fv8_A H6, RHO-related GTP-bin 83.5 0.54 1.9E-05 43.5 2.7 24 325-348 25-48 (207)
496 2ew1_A RAS-related protein RAB 83.4 0.57 1.9E-05 43.7 2.8 23 326-348 27-49 (201)
497 1u0l_A Probable GTPase ENGC; p 83.4 0.5 1.7E-05 47.5 2.6 25 325-349 169-193 (301)
498 4bas_A ADP-ribosylation factor 83.3 0.51 1.7E-05 42.9 2.4 23 325-347 17-39 (199)
499 1fzq_A ADP-ribosylation factor 83.2 0.53 1.8E-05 42.7 2.5 24 325-348 16-39 (181)
500 2qnr_A Septin-2, protein NEDD5 83.2 0.47 1.6E-05 47.8 2.3 23 326-348 19-41 (301)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.97 E-value=6.9e-31 Score=274.65 Aligned_cols=271 Identities=61% Similarity=1.005 Sum_probs=203.0
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
+++++++.+.|++.|+||+.+++.|..++..++.+...... ......++.++||+||||||||+
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----------------~~~~~~~~~~vll~GppGtGKT~ 66 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT----------------SNGVELGKSNILLIGPTGSGKTL 66 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC----------------SSSCCCCCCCEEEECCTTSSHHH
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc----------------cccccCCCCeEEEECCCCCCHHH
Confidence 56899999999999999999999999999877765432211 11223346899999999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHH
Q 008723 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
+|++||+.++.+|+.++++++...+|+|.+.+..+..++..+...+..+.++||||||||++...+.+...+.+.+.+.+
T Consensus 67 la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 99999999999999999999987778898767788888888776666678899999999999988777767777777789
Q ss_pred HHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccc-cccccCChhhhhhccccchhHh
Q 008723 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD-SSIGFGAPVRANMRAGVTDAAV 499 (556)
Q Consensus 421 ~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~-~~i~f~~p~~~~~~~~~~~~~~ 499 (556)
++.||++|||..+.+++.+.+.....+.+++.++|++||+++++.++++++..+..+ ..++|........ ....
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~-----~~~~ 221 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS-----DKAS 221 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC-----------------CCSC
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccc-----cchh
Confidence 999999999888888777777777777889999999999999999999999887666 6788876543221 1123
Q ss_pred HHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 500 TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 500 ~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
...+.+.+.++++...+|.|+|++||+.++.|.+++.+++.+|+...++.+.+
T Consensus 222 ~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~ 274 (363)
T 3hws_A 222 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTK 274 (363)
T ss_dssp HHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred hHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999999999999999874433333
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.96 E-value=3.1e-28 Score=255.46 Aligned_cols=285 Identities=52% Similarity=0.880 Sum_probs=189.1
Q ss_pred CCCCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChh
Q 008723 259 EDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGK 338 (556)
Q Consensus 259 ~~~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGK 338 (556)
...++++++.+.|++.|+||+++|+.|..++.+++.+......-.. .....+.........+..+..++||+|||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~-~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGK 85 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKK-QDNQDSNVELEHLEEVELSKSNILLIGPTGSGK 85 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSH
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccccccccccccccccCCCCEEEECCCCCCH
Confidence 4567899999999999999999999999999877766532110000 000000000001112334567899999999999
Q ss_pred HHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 339 TLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 339 TtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
|++|++||+.++.+|+.+++..+...+|+|...+..+..++......+..+.++||||||||++...+.......+.+.+
T Consensus 86 T~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 165 (376)
T 1um8_A 86 TLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred HHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchH
Confidence 99999999999999999999998877788887677777887776655666678999999999998876655555666667
Q ss_pred HHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhH
Q 008723 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~ 498 (556)
.+++.|+++||+..+.++..+.+.......+++.++|++||+++++.++++.+.+|.....++|+.+.....
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~-------- 237 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK-------- 237 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT--------
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc--------
Confidence 799999999998877777777777777788889999999999999888999888776666778876543210
Q ss_pred hHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhh
Q 008723 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQ 552 (556)
Q Consensus 499 ~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~k 552 (556)
....+.+.+.+.++.+..|.|+|++|++.++.|.+|+.+++.+|+.+..+.+.+
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~ 291 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIK 291 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHH
Confidence 012234556667777888999999999999999999999999999854444333
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.93 E-value=9.2e-26 Score=242.85 Aligned_cols=220 Identities=43% Similarity=0.690 Sum_probs=172.3
Q ss_pred CCChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHH
Q 008723 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (556)
Q Consensus 261 ~~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTt 340 (556)
.++|+++.+.|+++|+||+++|+.|..++.++|++.... ..+ ....++.++||+||||||||+
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~---~~~--------------~~~~~~~~iLl~GppGtGKT~ 65 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ---EPL--------------RHEVTPKNILMIGPTGVGKTE 65 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSC---TTT--------------TTTCCCCCEEEECCTTSSHHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccc---ccc--------------ccccCCceEEEEcCCCCCHHH
Confidence 368999999999999999999999999999888764211 110 111245789999999999999
Q ss_pred HHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcc-------------------------------------
Q 008723 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAE------------------------------------- 383 (556)
Q Consensus 341 lAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~------------------------------------- 383 (556)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..++.+|..+.
T Consensus 66 lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 66 IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp HHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------------------------
T ss_pred HHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999988778999866777777765430
Q ss_pred ---------------------------------------cc---------------------------------------
Q 008723 384 ---------------------------------------FN--------------------------------------- 385 (556)
Q Consensus 384 ---------------------------------------~~--------------------------------------- 385 (556)
..
T Consensus 146 ~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~ 225 (444)
T 1g41_A 146 VENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKA 225 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHH
Confidence 00
Q ss_pred -------------------hhcc-CCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCC
Q 008723 386 -------------------VEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPR 445 (556)
Q Consensus 386 -------------------l~~a-~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~ 445 (556)
+..+ ..+|||+||||+++...+ ..+.+++.+++|++||++||+.+++.
T Consensus 226 l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~---------- 293 (444)
T 1g41_A 226 LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST---------- 293 (444)
T ss_dssp CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE----------
T ss_pred HHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc----------
Confidence 0112 457999999999986532 25678888999999999999876654
Q ss_pred CCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccC
Q 008723 446 GDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF 525 (556)
Q Consensus 446 ~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~ 525 (556)
..+.+++++++||||++|..- .+.| ++|+|++||
T Consensus 294 -~~~~~d~~~ilfI~~gaf~~~----------------------------------------~~~d-----lipel~~R~ 327 (444)
T 1g41_A 294 -KHGMVKTDHILFIASGAFQVA----------------------------------------RPSD-----LIPELQGRL 327 (444)
T ss_dssp -TTEEEECTTCEEEEEECCSSC----------------------------------------CGGG-----SCHHHHTTC
T ss_pred -ccceecCCcEEEEeccccccC----------------------------------------Chhh-----cchHHhccc
Confidence 125789999999999987510 0011 579999999
Q ss_pred CceeeCCCCCHHHHHHHHhhhHHHHhhhhc
Q 008723 526 PILVSLTALTEDQLVKVLTEPKNALGQITF 555 (556)
Q Consensus 526 ~~iI~f~~ls~eeL~qIl~~~~~~l~kqy~ 555 (556)
+.+|.|++|+++++.+|++++.+.|.+||+
T Consensus 328 ~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~ 357 (444)
T 1g41_A 328 PIRVELTALSAADFERILTEPHASLTEQYK 357 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999985
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-22 Score=214.87 Aligned_cols=176 Identities=27% Similarity=0.374 Sum_probs=135.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.++|....+. ..+... ....++++|||+||||||||++|++||.++
T Consensus 146 ~~~d-IgGl~~~k~~l~e~v~~Pl~~---pe~f~~---------------~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 146 TYDM-VGGLTKQIKEIKEVIELPVKH---PELFES---------------LGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHC---HHHHHH---------------HTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhC---HHHHHh---------------CCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4555 899999999999999854332 111111 112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++. ++|+|++ ++.++.+|..+... .||||||||||.+...|.....+.+.....+.+.||..||
T Consensus 207 ~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 207 DCKFIRVSGAELV-QKYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp TCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred CCCceEEEhHHhh-ccccchH-HHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 9999999999999 4599998 88999999988743 8999999999999988765544444344567888999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
|.. ...++++|+|+|..+ +|.++. .+||+..|+|+.|+.+.
T Consensus 281 g~~-------------------~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 281 GFE-------------------TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp TTT-------------------CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred ccC-------------------CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 621 224567777777776 555554 46999999999998665
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.1e-22 Score=212.74 Aligned_cols=177 Identities=24% Similarity=0.310 Sum_probs=135.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.++|....+. ..+... .-..++++|||+||||||||++|++||.++
T Consensus 180 ~~~D-IgGld~~k~~L~e~v~~Pl~~---pe~f~~---------------~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 180 SYSD-IGGLESQIQEIKESVELPLTH---PELYEE---------------MGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CGGG-TCSCHHHHHHHHHHHHHHHHC---CHHHHH---------------HTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ccee-cCcHHHHHHHHHHHHHHHHhC---HHHHHh---------------CCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 5666 899999999999999754321 111110 112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.. .|+|++ ++.++.+|..+... .++||||||||.+...|.....+.+.....+...||..||
T Consensus 241 ~~~fi~v~~s~l~s-k~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 241 SATFLRIVGSELIQ-KYLGDG-PRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp TCEEEEEESGGGCC-SSSSHH-HHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEHHHhhh-ccCchH-HHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 99999999999994 599998 88999999887643 7999999999999988765544444344557788888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHH-hcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
|. -...++++|+|+|..+. |.++. .+||+..|+|+.|+.+..
T Consensus 315 g~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 315 GF-------------------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp HC-------------------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred Cc-------------------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 51 12345677887777764 44443 469999999999986653
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1e-21 Score=211.19 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=134.0
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.++|...++. ..+... .-..++++|||+||||||||++|++||+++
T Consensus 179 ~~~d-igGl~~~k~~l~e~v~~pl~~---p~~f~~---------------~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 179 TFDG-IGGLTEQIRELREVIELPLKN---PEIFQR---------------VGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CSGG-GCSCHHHHHHHHHHHHHHHHC---HHHHHH---------------HCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ChhH-hCChHHHHHHHHHHHHHHHhC---HHHHHh---------------CCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555 899999999999999854332 111110 112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.+ +|+|++ +..++.+|..+... .|+||||||||.+...|.....+.+.....+.+.||..||
T Consensus 240 ~~~~~~v~~s~l~s-k~~Ges-e~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 240 GANFIFSPASGIVD-KYIGES-ARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp TCEEEEEEGGGTCC-SSSSHH-HHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhhhcc-ccchHH-HHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 99999999999994 599998 78899999887643 8999999999999988755444333333557888999999
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~~ 490 (556)
|.. ...++++|+|+|..+ +|.++ +++||+..|+|+.|+.+..
T Consensus 314 g~~-------------------~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 314 GFD-------------------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp SSS-------------------CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred ccc-------------------CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 621 123456677777665 55554 4568999999999986653
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=211.18 Aligned_cols=177 Identities=21% Similarity=0.258 Sum_probs=133.9
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.++|....+. ..+... .-..++++|||+||||||||++|++||+++
T Consensus 207 t~~D-IgGl~~~k~~L~e~V~~pl~~---pe~f~~---------------~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 207 TYSD-VGGCKDQIEKLREVVELPLLS---PERFAT---------------LGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSS-CTTCHHHHHHHHHHTHHHHHC---HHHHHH---------------HTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CHHH-hccHHHHHHHHHHHHHHHhcC---HHHHHH---------------CCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455 899999999999998753221 111110 112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.+ .|+|++ ++.++.+|..+... .++||||||||.+...|.....+.......+...||..||
T Consensus 268 ~~~fi~vs~s~L~s-k~vGes-ek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 268 DATFIRVIGSELVQ-KYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp TCEEEEEEGGGGCC-CSSSHH-HHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEhHHhhc-ccCCHH-HHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 99999999999994 599998 88999999888643 8999999999999988765544444333457778888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
|. ....++++|+|+|..+ ++.++. .+||+..|+|+.|+.+..
T Consensus 342 g~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 342 GF-------------------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp SS-------------------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred cc-------------------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 51 1234567777777665 555554 469999999999986653
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-21 Score=208.97 Aligned_cols=177 Identities=28% Similarity=0.357 Sum_probs=132.4
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.+.|....+. ..+.. .....++++|||+||||||||++|++||.++
T Consensus 179 t~~d-igGl~~~k~~l~e~v~~pl~~---pe~f~---------------~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 179 TYSD-VGGLDKQIEELVEAIVLPMKR---ADKFK---------------DMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHC---SHHHH---------------HHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ChHh-cCcHHHHHHHHHHHHHHHHhC---HHHHH---------------hCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4565 899999999999998754322 11111 0112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++. ..|+|++ ++.++.+|..+... .|+||||||||.+...|.....+.......+...||..||
T Consensus 240 ~~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 240 NATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp TCEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEehhhhh-hcccchH-HHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999 4599998 88999999887644 7999999999999888755443333222446778888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~~ 490 (556)
|.. ...++++|+|+|..+ +|.++ +.+||+..|+|+.|+.+..
T Consensus 314 g~~-------------------~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 314 GFS-------------------SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp TSC-------------------SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred ccC-------------------CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 521 123466777777666 45443 4569999999999986653
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-20 Score=202.83 Aligned_cols=176 Identities=25% Similarity=0.344 Sum_probs=134.1
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.+.|....+. ..+... .-..++++|||+||||||||++|++||+++
T Consensus 170 ~~~d-igGl~~~k~~l~e~v~~pl~~---p~~~~~---------------~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 170 TYAD-VGGLDMQKQEIREAVELPLVQ---ADLYEQ---------------IGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CGGG-SCSCHHHHHHHHHHHHHHHHC---HHHHHH---------------HCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CHHH-hccHHHHHHHHHHHHHHHHhC---HHHHHh---------------CCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555 899999999999999754322 111111 112346899999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.. .|+|++ +..++.+|..+... .|+||||||+|.+...|.....+.+....++.+.||..||
T Consensus 231 ~~~~~~v~~~~l~~-~~~Ge~-e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 231 KAAFIRVNGSEFVH-KYLGEG-PRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp TCEEEEEEGGGTCC-SSCSHH-HHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEecchhhc-cccchh-HHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 99999999999984 599998 88999999887643 7999999999999988765544444444568899999999
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccC-Chhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFG-APVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~-~p~~~~ 489 (556)
|.. ...++++|+|+|..+ ++.++. .+||+..|+|+ .|+.+.
T Consensus 305 g~~-------------------~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 305 GFD-------------------QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp HSC-------------------SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred CCC-------------------CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 621 234567778777776 555554 46999999995 787554
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=4.1e-20 Score=186.17 Aligned_cols=209 Identities=44% Similarity=0.727 Sum_probs=152.8
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
.+|+++.+.|++.|+||+.+++.|..++..++.+.. + .... .....+.++||+||||||||++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~---~------~~~~--------~~~~~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQ---L------QEPL--------RHEVTPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTS---S------CHHH--------HHHCCCCCEEEECCTTSSHHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhh---h------cccc--------cccCCCceEEEECCCCCCHHHH
Confidence 579999999999999999999999998875433210 0 0000 0112357899999999999999
Q ss_pred HHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhcc-CCeEEEEecccccchhhhcccccccCchHHH
Q 008723 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (556)
Q Consensus 342 AraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a-~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v 420 (556)
|+++|+.++.+++.++++++...+|+|.+.+..+..++..+...+... .++||||||||.+..+... .+.+.+...+
T Consensus 67 a~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~ 144 (310)
T 1ofh_A 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGV 144 (310)
T ss_dssp HHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHH
T ss_pred HHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHH
Confidence 999999999999999999988767888776677888877654333332 4789999999999876421 1233344557
Q ss_pred HHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhH
Q 008723 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (556)
Q Consensus 421 ~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~ 500 (556)
++.|+++||+..+... .. .....+++||+++++... .+
T Consensus 145 ~~~Ll~~le~~~~~~~----------~~-~~~~~~~~~i~~~~~~~~----------------~~--------------- 182 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTK----------HG-MVKTDHILFIASGAFQVA----------------RP--------------- 182 (310)
T ss_dssp HHHHHHHHHCCEEEET----------TE-EEECTTCEEEEEECCSSS----------------CG---------------
T ss_pred HHHHHHHhcCCeEecc----------cc-cccCCcEEEEEcCCcccC----------------Cc---------------
Confidence 9999999996433210 01 346677888888653210 00
Q ss_pred HHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhh
Q 008723 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (556)
Q Consensus 501 ~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~ 545 (556)
..+.|.+++||+.++.|++++.+++.+|+.+
T Consensus 183 --------------~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 183 --------------SDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp --------------GGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred --------------ccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 0167999999998899999999999999984
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=3.9e-20 Score=211.61 Aligned_cols=173 Identities=24% Similarity=0.303 Sum_probs=119.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|.|++++|+.|.+++....+. ..... .....++.++||+||||||||++|++||.+++.+|+
T Consensus 479 iggl~~~k~~l~e~v~~p~~~---p~~f~---------------~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEH---PDKFL---------------KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTC---SGGGS---------------SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred hCCHHHHHHHHHHHHHhhhhC---HHHHH---------------hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 799999999999988633111 11111 112234688999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.++.+++. ++|+|++ ++.++++|..+.. ..||||||||||.+...|.....+.+...+++.++||..|||..
T Consensus 541 ~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-- 612 (806)
T 3cf2_A 541 SIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-- 612 (806)
T ss_dssp ECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC--
T ss_pred Eeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC--
Confidence 99999999 4699999 8899999998864 37999999999999988764332222233458999999999621
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
...++++|+|+|..+ ++.++. .+||++.|+|+.|+.+..
T Consensus 613 -----------------~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 613 -----------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp -----------------SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred -----------------CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 123567787777776 455444 359999999999986653
No 12
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.78 E-value=3e-18 Score=195.37 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=145.2
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
...+.+.|.+.|+||+++++.|..++.... ..+.. ...+..++||+||||||||++|+
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~-----~g~~~-----------------~~~p~~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMAR-----AGLGH-----------------EHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHH-----TTCSC-----------------TTSCSEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHh-----cccCC-----------------CCCCceEEEEECCCCCcHHHHHH
Confidence 445777888889999999999988875321 11110 01123579999999999999999
Q ss_pred HHHHHhCCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 344 TLARHVNVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 344 aLA~~l~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
+||+.++.+|+.++++++.+. +|+|.+....+...+.. ..++||||||||++.++
T Consensus 507 ~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl~lDEi~~~~~~------- 572 (758)
T 1r6b_X 507 QLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVLLLDEIEKAHPD------- 572 (758)
T ss_dssp HHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEEEEETGGGSCHH-------
T ss_pred HHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEEEEeCccccCHH-------
Confidence 999999999999999987642 35555433344444433 35789999999999877
Q ss_pred ccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhcc
Q 008723 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~ 492 (556)
+++.|+++||...+.. ..+..++.+++++|+|+|... ..+. +..++|......
T Consensus 573 -------~~~~Ll~~le~~~~~~----------~~g~~~~~~~~~iI~tsN~~~-~~~~-----~~~~g~~~~~~~---- 625 (758)
T 1r6b_X 573 -------VFNILLQVMDNGTLTD----------NNGRKADFRNVVLVMTTNAGV-RETE-----RKSIGLIHQDNS---- 625 (758)
T ss_dssp -------HHHHHHHHHHHSEEEE----------TTTEEEECTTEEEEEEECSSC-C------------------------
T ss_pred -------HHHHHHHHhcCcEEEc----------CCCCEEecCCeEEEEecCcch-hhhh-----hcccCccccchH----
Confidence 9999999999433321 124567889999999998632 1111 123445321100
Q ss_pred ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhh
Q 008723 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQIT 554 (556)
Q Consensus 493 ~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy 554 (556)
..+ .+.++..|.|+|++||+.+|.|++++++++.+|+...+..+.+++
T Consensus 626 --------~~~------~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 626 --------TDA------MEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp ----------C------HHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHH------HHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 001 112233489999999999999999999999999988877665443
No 13
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=5.7e-18 Score=171.32 Aligned_cols=215 Identities=23% Similarity=0.311 Sum_probs=142.3
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
..++.+.|.+.|+||+.+++.|...+......+ .....+..++||+||||||||++|+
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~----------------------~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGL----------------------KDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTC----------------------SCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC----------------------CCCCCCceEEEEECCCCcCHHHHHH
Confidence 345788888889999999999999886331110 0011123579999999999999999
Q ss_pred HHHHHh---CCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcc
Q 008723 344 TLARHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (556)
Q Consensus 344 aLA~~l---~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~ 409 (556)
+||+.+ +.+++.++|+.+... +++|......+...+. ...++||||||||++...
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-------RRPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH-------HCSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH-------hCCCeEEEEeChhhcCHH----
Confidence 999998 457999999876532 1222221112222222 235689999999999877
Q ss_pred cccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhh
Q 008723 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 410 ~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~ 489 (556)
+++.|+++|+...+.. .....++.+++++|+|+|.. ...+ ...... .
T Consensus 135 ----------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~-~~~i-~~~~~~------~----- 181 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLG-SPLI-LEGLQK------G----- 181 (311)
T ss_dssp ----------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTT-HHHH-HTTTTS------C-----
T ss_pred ----------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccC-HHHH-Hhhhcc------c-----
Confidence 9999999999543321 12346788999999998863 1111 110000 0
Q ss_pred hccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhh
Q 008723 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQIT 554 (556)
Q Consensus 490 ~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy 554 (556)
...+. +.+.+. +.....|.|+|++||+.++.|.+++.+++.+|+...+..+.++|
T Consensus 182 ----~~~~~----l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 182 ----WPYER----IRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp ----CCSST----HHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred ----ccHHH----HHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00011 111111 11223489999999999999999999999999998887776654
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.77 E-value=5e-19 Score=202.50 Aligned_cols=173 Identities=25% Similarity=0.403 Sum_probs=132.0
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |.|++++|+.|.++|....+ +..+...+| ..++++|||+||||||||++||+||++++
T Consensus 203 ~~d-IgGl~~~~~~l~e~v~~pl~---~p~~f~~~g---------------~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 203 YDD-IGGCRKQLAQIKEMVELPLR---HPALFKAIG---------------VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGG-CCSCCTTHHHHHHHHHHHHH---CCGGGTSCC---------------CCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhh-hcCHHHHHHHHHHHHHHHcc---CHHHHhhcC---------------CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 455 89999999999999874322 222222222 23468999999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.+++.++.+ .|+|+. +..++.+|..+... .++||||||||.|.+.+++.. ....+.+.++|+..|++
T Consensus 264 ~~~~~v~~~~l~s-k~~ges-e~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 264 AFFFLINGPEIMS-KLAGES-ESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CEEEEEEHHHHHS-SCTTHH-HHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHH
T ss_pred CeEEEEEhHHhhc-ccchHH-HHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhc
Confidence 9999999999984 599988 88899999988643 899999999999998875432 22335689999999996
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHh-cccccccccCChhhhhh
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISE-RRQDSSIGFGAPVRANM 490 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~-rr~~~~i~f~~p~~~~~ 490 (556)
.. ...++++|+++|..+ ++.++.+ +||+..|.++.|+.+..
T Consensus 335 ~~-------------------~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 335 LK-------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp CC-------------------GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred cc-------------------ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHH
Confidence 21 223467777777665 4444443 49999999999986553
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=172.91 Aligned_cols=217 Identities=21% Similarity=0.291 Sum_probs=144.7
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++.+|+.|.+++....+. ..+. .....++.++||+||||||||++|+++|+++
T Consensus 10 ~~~d-i~G~~~~k~~l~~~v~~p~~~---~~~~----------------~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSD-VAGLEGAKEALKEAVILPIKF---PHLF----------------TGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGG-SCSCHHHHHHHHHHHHHHHHC---GGGS----------------CTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHHhC---HHHH----------------hCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455 899999999999998744221 1111 1112345889999999999999999999999
Q ss_pred -CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 350 -NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 350 -~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
+.+|+.+++.++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+.... ....+.+++.|+..|
T Consensus 70 ~~~~~~~i~~~~l~~-~~~g~~-~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l 140 (322)
T 1xwi_A 70 NNSTFFSISSSDLVS-KWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQM 140 (322)
T ss_dssp TSCEEEEEECCSSCC-SSCCSC-HHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEhHHHHh-hhhhHH-HHHHHHHHHHHHh----cCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHH
Confidence 88999999999884 588887 7788888877653 3789999999999987654321 122345888999999
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhc
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l 507 (556)
++... ...++++|+++|..+ +++.+.+ ||+..+.++.|+.+... ..+...+
T Consensus 141 d~~~~------------------~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~---------~il~~~l 192 (322)
T 1xwi_A 141 QGVGV------------------DNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHARA---------AMFKLHL 192 (322)
T ss_dssp HCSSS------------------CCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCHHHHH---------HHHHHHH
T ss_pred hcccc------------------cCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCHHHHH---------HHHHHHH
Confidence 85211 234567777777665 4555554 88888999998855431 1111111
Q ss_pred CchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 508 ~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
... ...+.+..+..+. -....++-.+|..++.+..-
T Consensus 193 ~~~---~~~l~~~~l~~la--~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 193 GTT---QNSLTEADFRELG--RKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp TTC---CBCCCHHHHHHHH--HTCTTCCHHHHHHHHHHHHT
T ss_pred hcC---CCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHH
Confidence 110 0113344333332 12356888888888876543
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.76 E-value=5.5e-18 Score=174.40 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=142.4
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|++ |+|++.+|+.|.+++...... ..+ ......++.++||+||||||||++|++||++++
T Consensus 17 ~~d-i~G~~~~~~~l~~~i~~~~~~---~~~----------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 17 WED-VAGLEGAKEALKEAVILPVKF---PHL----------------FKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHC---GGG----------------CCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHH-hcChHHHHHHHHHHHHHHHhC---HHH----------------HhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 555 899999999999998643211 111 111223457899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.++++++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+.... ....+.+++.|+..|++
T Consensus 77 ~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 77 STFFSVSSSDLVS-KWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNG 147 (322)
T ss_dssp CEEEEEEHHHHHT-TTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGG
T ss_pred CCEEEEchHHHhh-cccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhcc
Confidence 9999999999874 588877 7788888877653 3789999999999987654321 22235588999999985
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCc
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~ 509 (556)
... ...++++|+|+|.. .++..+.+ ||+..+.|+.|+.+... +.+...+..
T Consensus 148 ~~~------------------~~~~v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~r~---------~il~~~~~~ 199 (322)
T 3eie_A 148 VGN------------------DSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAART---------TMFEINVGD 199 (322)
T ss_dssp GGT------------------SCCCEEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHHHH---------HHHHHHHTT
T ss_pred ccc------------------cCCceEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHHHH---------HHHHHHhcc
Confidence 211 22346777777665 45556655 89899999998865531 111111111
Q ss_pred hHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhH
Q 008723 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPK 547 (556)
Q Consensus 510 ~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~ 547 (556)
. ...+.++.+..+.. ....++..+|..++.+..
T Consensus 200 ~---~~~~~~~~l~~la~--~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 200 T---PCVLTKEDYRTLGA--MTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp C---CCCCCHHHHHHHHH--TTTTCCHHHHHHHHHHHT
T ss_pred C---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 0 01134444443321 235678888888876553
No 17
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1e-17 Score=169.50 Aligned_cols=193 Identities=20% Similarity=0.294 Sum_probs=133.3
Q ss_pred CChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHH
Q 008723 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (556)
Q Consensus 262 ~~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtl 341 (556)
...+++.+.|++.|+|++.+|+.|.+.+......-.... .++ ....+..++||+||||||||++
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~--~g~--------------~~~~~~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQK--LGL--------------AHETPTLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH--HTC--------------CSSCCCCEEEEEECTTSSHHHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHH--cCC--------------CCCCCCceEEEECCCCCCHHHH
Confidence 356778999997799999999999988764321100000 000 0012346899999999999999
Q ss_pred HHHHHHHh-------CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccccc
Q 008723 342 AKTLARHV-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (556)
Q Consensus 342 AraLA~~l-------~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~ 414 (556)
|+++|+.+ ..+++.+++.++.. .|+|.. ...+..+|..+ .++||||||+|.+...+....
T Consensus 84 a~~la~~l~~~~~~~~~~~~~~~~~~l~~-~~~g~~-~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~~~---- 150 (309)
T 3syl_A 84 ALKMAGLLHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEVLKRA-------MGGVLFIDEAYYLYRPDNERD---- 150 (309)
T ss_dssp HHHHHHHHHHTTSSSSCCEEEECGGGTCC-SSTTCH-HHHHHHHHHHH-------TTSEEEEETGGGSCCCC---C----
T ss_pred HHHHHHHHHhcCCcCCCcEEEEcHHHhhh-hccccc-HHHHHHHHHhc-------CCCEEEEEChhhhccCCCccc----
Confidence 99999988 33899999998874 477776 45566666554 467999999999865432111
Q ss_pred CchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhcccc
Q 008723 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (556)
Q Consensus 415 ~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~ 494 (556)
....+++.|+++|+. ...++++|++++...++...
T Consensus 151 -~~~~~~~~Ll~~l~~---------------------~~~~~~~i~~~~~~~~~~~~----------------------- 185 (309)
T 3syl_A 151 -YGQEAIEILLQVMEN---------------------NRDDLVVILAGYADRMENFF----------------------- 185 (309)
T ss_dssp -CTHHHHHHHHHHHHH---------------------CTTTCEEEEEECHHHHHHHH-----------------------
T ss_pred -ccHHHHHHHHHHHhc---------------------CCCCEEEEEeCChHHHHHHH-----------------------
Confidence 123489999999983 12356777777643221111
Q ss_pred chhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 495 ~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
.+.|.+.+||+.++.|.+++.+++.+|+......
T Consensus 186 ---------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 186 ---------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ---------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ---------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 0357888899889999999999999988766544
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.75 E-value=8.2e-18 Score=175.96 Aligned_cols=218 Identities=23% Similarity=0.298 Sum_probs=138.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++.+|+.|.+++...... ..+ ......+..+|||+||||||||++|++||+++
T Consensus 49 ~~~d-i~G~~~~~~~l~~~v~~~~~~---~~~----------------~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 49 KWED-VAGLEGAKEALKEAVILPVKF---PHL----------------FKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CGGG-SCCGGGHHHHHHHHTHHHHHC---GGG----------------GCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhC---HHH----------------HhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4555 899999999999988643211 111 11112345789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++.++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+... .....+.+++.|+..|+
T Consensus 109 ~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 109 NSTFFSVSSSDLVS-KWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMN 179 (355)
T ss_dssp TCEEEEEEHHHHHS-CC---C-HHHHHHHHHHHHH----TSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHhh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhh
Confidence 99999999999874 488887 6778888876542 378999999999998765432 11223458899999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcC
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~ 508 (556)
+.. ....++++|+++|..+ ++..+.+ ||+..+.++.|+.+... ..+...+.
T Consensus 180 ~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~---------~il~~~l~ 231 (355)
T 2qp9_X 180 GVG------------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAART---------TMFEINVG 231 (355)
T ss_dssp HCC---------------------CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHH---------HHHHHHHT
T ss_pred ccc------------------ccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHH---------HHHHHHHh
Confidence 521 1234577787777664 4555554 88888999988865431 11111111
Q ss_pred chHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 509 ~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
.. ...+.+..+..+.. ....++-.+|..++.+....
T Consensus 232 ~~---~~~~~~~~l~~la~--~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 232 DT---PSVLTKEDYRTLGA--MTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp TS---CBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHHHH
T ss_pred hC---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHH
Confidence 10 00133443333321 23467888888888765543
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.74 E-value=6.5e-18 Score=172.37 Aligned_cols=173 Identities=24% Similarity=0.324 Sum_probs=122.9
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHH--HHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKR--IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~r--l~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+++ |+|++.+|+.|.+++...... ++.. ....++.++||+||||||||++|++||++
T Consensus 14 ~~d-i~G~~~~~~~l~~~v~~~~~~~~~~~~--------------------~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WED-IGGLEDVKRELQELVQYPVEHPDKFLK--------------------FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGG-SCSCHHHHHHHHHHHHHHHHCHHHHHH--------------------HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHH-hCCHHHHHHHHHHHHHHHhhCHHHHHH--------------------cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 445 899999999999998743211 1110 01123578999999999999999999999
Q ss_pred hCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 349 l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
++.+|+.+++.++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+.............+++.|+..|
T Consensus 73 ~~~~~i~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 73 CQANFISIKGPELLT-MWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp TTCEEEEECHHHHHH-HHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred hCCCEEEEEhHHHHh-hhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 999999999998874 477777 5667788877643 3689999999999988764322111111234788999999
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-HhcccccccccCChhhhh
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i~f~~p~~~~ 489 (556)
++.. ...++++|+|+|..+ ++..+ +.+||+..+.++.|+.++
T Consensus 147 ~~~~-------------------~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 147 DGMS-------------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp HSSC-------------------TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred hccc-------------------CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence 8411 124577788777665 33433 345898899999988654
No 20
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=6.8e-17 Score=184.48 Aligned_cols=197 Identities=21% Similarity=0.322 Sum_probs=135.6
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHH
Q 008723 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 265 ~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAra 344 (556)
..+.+.|.+.|+||+.+++.|..++.... .... ....+..++||+||||||||++|++
T Consensus 483 ~~l~~~l~~~viGq~~a~~~l~~~i~~~~-----~~~~-----------------~~~~p~~~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 483 LNMENILHSRVIGQDEAVVAVAKAVRRAR-----AGLK-----------------DPKRPIGSFIFLGPTGVGKTELARA 540 (758)
T ss_dssp -CHHHHHHTTSCSCHHHHHHHHHHHHHHT-----TTCS-----------------CTTSCSEEEEEESCTTSSHHHHHHH
T ss_pred HHHHHHHhCcCcChHHHHHHHHHHHHHHH-----cccC-----------------CCCCCceEEEEECCCCCCHHHHHHH
Confidence 34677888889999999999999886321 0000 0011223799999999999999999
Q ss_pred HHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHH
Q 008723 345 LARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (556)
Q Consensus 345 LA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~ 421 (556)
||+.+ +.+|+.++|+++.+. +... ...+...+.. ..++|||||||+++.+. ++
T Consensus 541 la~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~~~~~--------------~~ 596 (758)
T 3pxi_A 541 LAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVRR-------KPYSVVLLDAIEKAHPD--------------VF 596 (758)
T ss_dssp HHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHHH-------CSSSEEEEECGGGSCHH--------------HH
T ss_pred HHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHHh-------CCCeEEEEeCccccCHH--------------HH
Confidence 99998 679999999988754 2222 1222233222 25679999999999877 99
Q ss_pred HHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHH
Q 008723 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (556)
Q Consensus 422 ~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~ 501 (556)
+.|+++||...+.. ..+..++..++++|+|+|...-. . .
T Consensus 597 ~~Ll~~le~g~~~~----------~~g~~~~~~~~~iI~ttn~~~~~------------------~-------------~ 635 (758)
T 3pxi_A 597 NILLQVLEDGRLTD----------SKGRTVDFRNTILIMTSNVGASE------------------K-------------D 635 (758)
T ss_dssp HHHHHHHHHSBCC---------------CCBCTTCEEEEEESSSTTC------------------C-------------H
T ss_pred HHHHHHhccCeEEc----------CCCCEeccCCeEEEEeCCCChhh------------------H-------------H
Confidence 99999999433221 11224677888999988843210 0 0
Q ss_pred HHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhh
Q 008723 502 SLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQIT 554 (556)
Q Consensus 502 ~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy 554 (556)
.+. +..+..|.|+|++||+.+|.|.+++++++.+|+...+..+.+++
T Consensus 636 ~~~------~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 682 (758)
T 3pxi_A 636 KVM------GELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL 682 (758)
T ss_dssp HHH------HHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 11223389999999999999999999999999998888876665
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=169.34 Aligned_cols=172 Identities=26% Similarity=0.375 Sum_probs=113.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|++ |+|++.+++.|.+.+...... .. ....+..+..+|||+||||||||++|++||+.++
T Consensus 114 ~~~-iiG~~~~~~~l~~~~~~~~~~---~~----------------~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 114 FDD-IAGQDLAKQALQEIVILPSLR---PE----------------LFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHC---TT----------------TSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hHH-hCCHHHHHHHHHHHHHHhccC---HH----------------HhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 445 899999999999988643211 10 1112233458999999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.+++.++.. .|+|.. +..+..+|..+.. ..++||||||||.|...+... .......+++.|+..|++
T Consensus 174 ~~~~~v~~~~l~~-~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 174 ATFFNISAASLTS-KYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp CEEEEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHH
T ss_pred CcEEEeeHHHhhc-cccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhc
Confidence 9999999999884 478877 6677788776653 367899999999997664321 122234588899999985
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhh
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~ 489 (556)
... ....++++|+|+|..+ ++..+. +||...+.|+.|+.++
T Consensus 245 ~~~-----------------~~~~~v~vI~atn~~~~l~~~l~-~R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 245 VQS-----------------AGDDRVLVMGATNRPQELDEAVL-RRFIKRVYVSLPNEET 286 (389)
T ss_dssp HC----------------------CEEEEEEESCGGGCCHHHH-TTCCEEEECCCCCHHH
T ss_pred ccc-----------------cCCCCEEEEEecCCchhcCHHHH-cCcceEEEcCCcCHHH
Confidence 221 1124577787777654 444444 4777778888887554
No 22
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=1.4e-16 Score=184.22 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=139.2
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 267 l~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
+.+.+.+.|+||+.+++.|..++.... ..+. ....+..++||+||||||||++|++||
T Consensus 552 l~~~l~~~viG~~~a~~~l~~~i~~~~-----~g~~-----------------~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 552 LEEELHKRVVGQDEAIRAVADAIRRAR-----AGLK-----------------DPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHG-----GGCS-----------------CSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHh-----cccC-----------------CCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 455666779999999999998885321 1100 001123589999999999999999999
Q ss_pred HHh---CCCeeeecccccccc-----------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc
Q 008723 347 RHV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 347 ~~l---~~~fv~i~~s~l~~s-----------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
+.+ +.+|+.++|+++... +|+|......+...+.. ..++|||||||+++.++
T Consensus 610 ~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-------~~~~vl~lDEi~~l~~~------- 675 (854)
T 1qvr_A 610 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDEIEKAHPD------- 675 (854)
T ss_dssp HHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-------CSSEEEEESSGGGSCHH-------
T ss_pred HHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-------CCCeEEEEecccccCHH-------
Confidence 999 779999999876532 24454422333333322 24689999999999877
Q ss_pred ccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhcc
Q 008723 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~ 492 (556)
+++.|+++||...+. ......++.+++++|+|+|.. ...+.... .++.
T Consensus 676 -------~~~~Ll~~l~~~~~~----------~~~g~~vd~~~~iiI~tsn~~-~~~~~~~~------~~~~-------- 723 (854)
T 1qvr_A 676 -------VFNILLQILDDGRLT----------DSHGRTVDFRNTVIILTSNLG-SPLILEGL------QKGW-------- 723 (854)
T ss_dssp -------HHHHHHHHHTTTEEC----------CSSSCCEECTTEEEEEECCTT-HHHHHHHH------HTTC--------
T ss_pred -------HHHHHHHHhccCceE----------CCCCCEeccCCeEEEEecCcC-hHHHhhhc------cccc--------
Confidence 999999999943322 112346789999999998853 11111100 0000
Q ss_pred ccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHHHhhhh
Q 008723 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGQIT 554 (556)
Q Consensus 493 ~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~l~kqy 554 (556)
.+..+.+.+++ ..+..|.|+|++||+.++.|.+++.+++.+|+...+..+.+++
T Consensus 724 --~~~~l~~~v~~------~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 724 --PYERIRDEVFK------VLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp --CHHHHHHHHHH------HHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHH------HHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 01111112211 1345599999999999999999999999999988887766554
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.70 E-value=1.9e-16 Score=172.13 Aligned_cols=175 Identities=26% Similarity=0.341 Sum_probs=121.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++|+.|.+.+.. +.. ......++ ...+.++||+||||||||++|++||.++
T Consensus 14 ~f~d-i~G~~~~~~~l~e~v~~-l~~---~~~~~~~g---------------~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 14 TFKD-VGGAEEAIEELKEVVEF-LKD---PSKFNRIG---------------ARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CGGG-CCSCHHHHHHHHHHHHH-HHC---THHHHTTT---------------CCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHH-hCCcHHHHHHHHHHHHH-hhC---hHHHhhcC---------------CCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3555 89999999999998752 111 10000001 1234679999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.++++++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+.....+.+.....+++.|+..|+
T Consensus 74 ~~~f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 74 NVPFFHISGSDFVE-LFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp TCCEEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH
T ss_pred CCCeeeCCHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh
Confidence 99999999999885 477776 6677888877653 36899999999999877654322333334568899999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHH-HHhcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKT-ISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~-i~~rr~~~~i~f~~p~~~~ 489 (556)
+.. ...++++|+++|..+ ++.. ++.+||+..+.++.|+.+.
T Consensus 148 ~~~-------------------~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 148 GFD-------------------SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp HSC-------------------GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred ccC-------------------CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 511 123567778777765 3433 3446899999999888654
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.69 E-value=1.1e-16 Score=172.31 Aligned_cols=217 Identities=21% Similarity=0.286 Sum_probs=134.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ |+|++.+++.|.+++...... .. .......++.+|||+||||||||++|++||+++
T Consensus 132 ~~~d-i~G~~~~k~~l~~~v~~p~~~---~~----------------~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSD-VAGLEGAKEALKEAVILPIKF---PH----------------LFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGG-SCSCHHHHHHHHHHHTHHHHC---TT----------------TTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHhhC---HH----------------HhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3455 899999999999988533211 00 011112345899999999999999999999999
Q ss_pred -CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHH
Q 008723 350 -NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (556)
Q Consensus 350 -~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~L 428 (556)
+.+|+.++++++.. .|+|.. +..++.+|..+.. ..++||||||||.+...+.... ....+.+++.||..|
T Consensus 192 ~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l 262 (444)
T 2zan_A 192 NNSTFFSISSSDLVS-KWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQM 262 (444)
T ss_dssp CSSEEEEECCC----------C-CCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTT
T ss_pred CCCCEEEEeHHHHHh-hhcchH-HHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHH
Confidence 88999999999874 478877 5667788876542 3789999999999977654321 122345888898888
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhc
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l 507 (556)
++... ...+++||+|+|..+ ++..+. +||+..+.++.|+.+... ..+...+
T Consensus 263 ~~~~~------------------~~~~v~vI~atn~~~~ld~al~-rRf~~~i~i~~P~~~~r~---------~il~~~l 314 (444)
T 2zan_A 263 QGVGV------------------DNDGILVLGATNIPWVLDSAIR-RRFEKRIYIPLPEAHARA---------AMFRLHL 314 (444)
T ss_dssp TCSSC------------------CCSSCEEEEEESCGGGSCHHHH-TTCCEEEECCCCCHHHHH---------HHHHHHH
T ss_pred hCccc------------------CCCCEEEEecCCCccccCHHHH-hhcceEEEeCCcCHHHHH---------HHHHHHH
Confidence 74211 234567787777665 444444 488888899988755431 1111111
Q ss_pred CchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHH
Q 008723 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (556)
Q Consensus 508 ~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~ 548 (556)
... ...+.+..+..+. -....++-.+|..++.+..-
T Consensus 315 ~~~---~~~l~~~~l~~la--~~t~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 315 GST---QNSLTEADFQELG--RKTDGYSGADISIIVRDALM 350 (444)
T ss_dssp TTS---CEECCHHHHHHHH--HHTTTCCHHHHHHHHHHHHT
T ss_pred hcC---CCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHH
Confidence 110 0013344333332 12456788888888766543
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=2.2e-16 Score=158.06 Aligned_cols=175 Identities=26% Similarity=0.345 Sum_probs=113.0
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+|++.+++.|.+.+...... ...... .....+.++||+||||||||++|+++|+.++
T Consensus 16 ~~~-i~G~~~~~~~l~~~~~~~~~~---~~~~~~---------------~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 16 YED-IGGLEKQMQEIREVVELPLKH---PELFEK---------------VGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHC---HHHHHH---------------HCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HHH-hcCHHHHHHHHHHHHHHHhhC---HHHHHh---------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 455 899999999999988643211 000000 0012357899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+++.+++.++.. .+.|.. +..+..+|..+.. ..++||||||||.+...+.....+... ..+..|+.+++.
T Consensus 77 ~~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~ 147 (285)
T 3h4m_A 77 ATFIRVVGSELVK-KFIGEG-ASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDR---EVQRTLMQLLAE 147 (285)
T ss_dssp CEEEEEEGGGGCC-CSTTHH-HHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGG---HHHHHHHHHHHH
T ss_pred CCEEEEehHHHHH-hccchH-HHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccH---HHHHHHHHHHHH
Confidence 9999999998874 477766 5667777766542 367899999999997664432222111 244555554431
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHH-hcccccccccCChhhhh
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
... + ....++++|+|+|..+. +..+. ..||...+.++.|+.++
T Consensus 148 ~~~-~---------------~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 148 MDG-F---------------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HHT-T---------------CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred hhC-C---------------CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 000 0 01235677777776543 33333 33787788888887554
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=164.17 Aligned_cols=215 Identities=21% Similarity=0.304 Sum_probs=139.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|+|++.+++.|.+++...... .. ..........++||+||||||||++|++||+.++.+|+
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~---~~----------------~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLR---PD----------------IFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHC---TT----------------TSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred hCChHHHHHHHHHHHHHHhhC---hH----------------hHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 899999999999988643211 10 11122334689999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.++++++.. .|.|.. +..++.+|..+.. ..++||||||||.+...+... .......+++.|+..|++...
T Consensus 147 ~i~~~~l~~-~~~g~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~- 216 (357)
T 3d8b_A 147 SISASSLTS-KWVGEG-EKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATT- 216 (357)
T ss_dssp EEEGGGGCC-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----
T ss_pred EEehHHhhc-cccchH-HHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccc-
Confidence 999999884 477766 6677777766542 368999999999997764321 122334588899999885221
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHH
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~ 513 (556)
....++++|+|+|..+ +++.+.+ ||...+.++.|+.++. ...+...+...
T Consensus 217 ----------------~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r---------~~il~~~~~~~--- 267 (357)
T 3d8b_A 217 ----------------SSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASAR---------KQIVINLMSKE--- 267 (357)
T ss_dssp -----------------CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHH---------HHHHHHHHHTS---
T ss_pred ----------------cCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHH---------HHHHHHHHhhc---
Confidence 1224567777777654 5555554 7877888888875543 11111111100
Q ss_pred HcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhHHH
Q 008723 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (556)
Q Consensus 514 ~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~~~ 549 (556)
...+.++.+..+.. ....++..+|..++.+....
T Consensus 268 ~~~l~~~~l~~la~--~t~G~s~~dl~~l~~~a~~~ 301 (357)
T 3d8b_A 268 QCCLSEEEIEQIVQ--QSDAFSGADMTQLCREASLG 301 (357)
T ss_dssp CBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHHTH
T ss_pred CCCccHHHHHHHHH--HcCCCCHHHHHHHHHHHHHH
Confidence 01245555554422 23567888888887765433
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=4.8e-16 Score=156.74 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=136.7
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+|++.+++.|.+.+...... .. ....+..+..++||+||||||||++|+++|+.++
T Consensus 20 ~~~-i~G~~~~~~~l~~~i~~~~~~---~~----------------~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 20 WTD-IAGQDVAKQALQEMVILPSVR---PE----------------LFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGG-SCCCHHHHHHHHHHTHHHHHC---GG----------------GSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHhhhhC---HH----------------HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 455 899999999999988643211 10 1111223458999999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.+++.++.. .|.|.. +..++.+|..+. ...++||||||+|.+...+.... ......+++.|+..|++
T Consensus 80 ~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 80 ATFLNISAASLTS-KYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDG 150 (297)
T ss_dssp CEEEEEESTTTSS-SSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHH
T ss_pred CCeEEeeHHHHhh-cccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhc
Confidence 9999999998874 477765 667777776654 23789999999999987643221 11224478889999885
Q ss_pred cccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCc
Q 008723 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (556)
Q Consensus 431 ~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~ 509 (556)
.... ....++++|+++|.. .++..+.+ ||+..+.|+.|+.+.. ...+...+..
T Consensus 151 ~~~~----------------~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~r---------~~il~~~~~~ 204 (297)
T 3b9p_A 151 LPGN----------------PDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQTR---------ELLLNRLLQK 204 (297)
T ss_dssp CC----------------------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHHH---------HHHHHHHHGG
T ss_pred cccc----------------CCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHHH---------HHHHHHHHHh
Confidence 2211 122346677776655 45555554 7888889988875442 1111111111
Q ss_pred hHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhh
Q 008723 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (556)
Q Consensus 510 ~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~ 546 (556)
. ...+.++.+..+.. ....++..+|..++.+.
T Consensus 205 ~---~~~~~~~~~~~la~--~~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 205 Q---GSPLDTEALRRLAK--ITDGYSGSDLTALAKDA 236 (297)
T ss_dssp G---SCCSCHHHHHHHHH--HTTTCCHHHHHHHHHHH
T ss_pred c---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHH
Confidence 0 01245555554432 23567777777776654
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=154.27 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=105.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+|++.+|+.|.+.+... ....... ......+.++||+||||||||++|+++|++++
T Consensus 5 ~~~-i~G~~~~~~~l~~~~~~~----~~~~~~~---------------~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 5 FKD-VAGMHEAKLEVREFVDYL----KSPERFL---------------QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTS-SCSCHHHHHHHHHHHHHH----HCCC---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHH-hCCHHHHHHHHHHHHHHH----HCHHHHH---------------HcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 899999999998877521 0110000 01112357899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc-cCchHHHHHHHHHHHh
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR-DVSGEGVQQALLKMLE 429 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~-~~s~~~v~~~LL~~LE 429 (556)
.+|+.+++.++.. .|.+.. +..+..+|..+.. ..++||||||+|.+...+.....+. .......+..|+..|+
T Consensus 65 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 65 VPFLAMAGAEFVE-VIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp CCEEEEETTTTSS-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred CCEEEechHHHHh-hccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 9999999998874 355655 5667777776542 2578999999999976643211100 0111125566666666
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcCh-HHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl-~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
+.. ...++++|+++|..+. +..+. ..||+..+.++.|..++
T Consensus 139 ~~~-------------------~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 139 GMG-------------------TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp TCC-------------------TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred CcC-------------------CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 310 1235677777776543 33332 23788888888887554
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=7.2e-16 Score=152.63 Aligned_cols=175 Identities=24% Similarity=0.331 Sum_probs=117.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++.+|+.|.+.+.. +........ .....+.+++|+||||||||++|++||+.+
T Consensus 10 ~~~~-i~G~~~~~~~l~~~~~~----~~~~~~~~~---------------~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 10 TFAD-VAGCDEAKEEVAELVEY----LREPSRFQK---------------LGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CGGG-SCSCHHHHHHTHHHHHH----HHCGGGC--------------------CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHH-hcCcHHHHHHHHHHHHH----HhCHHHHHH---------------cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3555 89999999999887752 111111000 001224689999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++.++.. .+.|.. +..++.+|+.+.. ..+++|||||||.+...+.....+.......+++.|+..|+
T Consensus 70 ~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 70 KVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp TCCEEEECSCSSTT-SCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 99999999998874 477776 5677788876542 35789999999998776433211112222357788888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
+.. ...++++|+++|..+ +++.+. ..||+..+.++.|+.++
T Consensus 144 ~~~-------------------~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 144 GFE-------------------GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp TCC-------------------SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred Ccc-------------------cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 410 123466677666654 444433 34788888888887554
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.66 E-value=2.4e-16 Score=160.53 Aligned_cols=147 Identities=15% Similarity=0.227 Sum_probs=92.5
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~ 403 (556)
.+.++||+||||||||++|++||+.++.+|+.++++++.. .|+|.. +..++.+|..+........++||||||||++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC-C---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh-ccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 3578999999999999999999999999999999999884 588877 67778888777433334578999999999998
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhccc-cccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHH-Hhccccccc
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTI-SERRQDSSI 480 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg~~-v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i-~~rr~~~~i 480 (556)
..+.+. .........+++.|+++||+.. +.+++. ....+..++++|+|+|..+ ++..+ +..||+..+
T Consensus 113 ~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~---------~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 113 GRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGM---------YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC--------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred CCCCCC-ccccchHHHHHHHHHHHhccccccccccc---------cccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 754321 1122233458899999999432 211111 0123456678888888765 44444 446887777
Q ss_pred cc
Q 008723 481 GF 482 (556)
Q Consensus 481 ~f 482 (556)
.+
T Consensus 183 ~~ 184 (293)
T 3t15_A 183 WA 184 (293)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 31
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.64 E-value=5.7e-16 Score=168.99 Aligned_cols=167 Identities=23% Similarity=0.380 Sum_probs=122.2
Q ss_pred ccChHHHHHHHHHHHHHHHH--HHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~--rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
|+|++.+++.|.+.+..... .++.. ....++.++||+||||||||++|++||+.++.+
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~--------------------~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKA--------------------IGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHH--------------------HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHh--------------------cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 89999999999998864311 11111 001245789999999999999999999999999
Q ss_pred eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccc
Q 008723 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (556)
Q Consensus 353 fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~ 432 (556)
|+.++|.++.. .|+|+. +..++.+|..+.. ..++||||||||.+...+.... ......+++.|+.+|++..
T Consensus 266 fv~vn~~~l~~-~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 266 FFLINGPEIMS-KLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp EEEEEHHHHHT-SCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEchHhhh-hhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccc
Confidence 99999999884 578877 6677888877653 3679999999999987654221 1122458999999999421
Q ss_pred cccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHHh-cccccccccCChhhhh
Q 008723 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISE-RRQDSSIGFGAPVRAN 489 (556)
Q Consensus 433 v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~~-rr~~~~i~f~~p~~~~ 489 (556)
...++++|+|+|..+ +++.+.+ .+|+..+.|+.|+.++
T Consensus 337 -------------------~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 337 -------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp -------------------TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred -------------------cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 123567777777654 4545544 5898899999988655
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=3.4e-15 Score=153.24 Aligned_cols=170 Identities=22% Similarity=0.381 Sum_probs=113.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++|++.+++.|...+..... . ..+..++||+||||||||++|+++|+.+
T Consensus 27 ~~~~-iiG~~~~~~~l~~~l~~~~~----~----------------------~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 27 NFDG-YIGQESIKKNLNVFIAAAKK----R----------------------NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHH----T----------------------TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCChHHHHHHHHHHHHHHHh----c----------------------CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3455 79999999999888752210 0 0124689999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++..+.. ...+...+.. .+.+++||||||+.+... +++.|+..|+
T Consensus 80 ~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~ 131 (338)
T 3pfi_A 80 SANIKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAME 131 (338)
T ss_dssp TCCEEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCeEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHH
Confidence 99999999976542 2333344433 236789999999999876 8999999999
Q ss_pred ccccccC-CCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcC
Q 008723 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (556)
Q Consensus 430 g~~v~ip-e~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~ 508 (556)
...+.+- ..+ .....+.++..++++|+++|....
T Consensus 132 ~~~~~~~~~~~----~~~~~~~~~~~~~~~i~atn~~~~----------------------------------------- 166 (338)
T 3pfi_A 132 DYRLDIIIGSG----PAAQTIKIDLPKFTLIGATTRAGM----------------------------------------- 166 (338)
T ss_dssp TSCC-------------CCCCCCCCCCCEEEEEESCGGG-----------------------------------------
T ss_pred hccchhhcccC----ccccceecCCCCeEEEEeCCCccc-----------------------------------------
Confidence 5433211 110 001112233345778887775321
Q ss_pred chHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhhH
Q 008723 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPK 547 (556)
Q Consensus 509 ~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~~ 547 (556)
+.+.+.+||+.++.|.+++.+++.+|+....
T Consensus 167 --------l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 167 --------LSNPLRDRFGMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp --------SCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred --------cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHH
Confidence 4566666776677777777777666665443
No 33
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.61 E-value=6.8e-15 Score=148.71 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=133.9
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |.|++++|+.|.+.+...+.... . .+.+. ...+.+++|+||||||||+++++||.++
T Consensus 8 ~~~d-i~g~~~~~~~l~~~i~~~~~~~~--~--------------l~~~~--l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 8 TWAD-IGALEDIREELTMAILAPVRNPD--Q--------------FKALG--LVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHH--H--------------HHHTT--CCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHhhCHH--H--------------HHHcC--CCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4555 89999999999998765443210 0 00000 0123569999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..++.+++.++.. .|+|+. +..+..+|+.+.. ..++++|+||+|.+...+....... ...+.+.++..|+
T Consensus 69 ~~~~i~i~g~~l~~-~~~~~~-~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~~~---~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 69 GLNFISVKGPELLN-MYVGES-ERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRETGA---SVRVVNQLLTEMD 139 (274)
T ss_dssp TCEEEEEETTTTCS-STTHHH-HHHHHHHHHHHHH----TCSEEEEEETCTTTCC------------CTTHHHHHHHHHH
T ss_pred CCCEEEEEcHHHHh-hhhhHH-HHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcchH---HHHHHHHHHHhhh
Confidence 99999999988874 466665 6677888877532 2678999999998876543221111 1237788999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhhccccchhHhHHHHHhhc
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l 507 (556)
|... .+.+++++++|..+ +++++. .+||+..|+++.|+.+.. ..+++.+
T Consensus 140 gg~~-------------------~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r----------~~il~~~ 190 (274)
T 2x8a_A 140 GLEA-------------------RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR----------LAILKTI 190 (274)
T ss_dssp TCCS-------------------TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH----------HHHHHHH
T ss_pred cccc-------------------cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH----------HHHHHHH
Confidence 5211 12344555555554 555544 359999999999986543 1222221
Q ss_pred CchHHHHcCCCHHHhccCC--ceee---CCCCCHHHHHHHHhhhHHHHh
Q 008723 508 ESSDLIAYGLIPEFVGRFP--ILVS---LTALTEDQLVKVLTEPKNALG 551 (556)
Q Consensus 508 ~~~dl~~~~l~Pell~R~~--~iI~---f~~ls~eeL~qIl~~~~~~l~ 551 (556)
.. ......+..-++ .+.. ...|+-.||..++.+....-.
T Consensus 191 ~~-----~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 191 TK-----NGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICAL 234 (274)
T ss_dssp TT-----TTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred Hh-----cccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHH
Confidence 10 000011111122 1111 237999999999987765443
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.60 E-value=2.1e-15 Score=166.44 Aligned_cols=156 Identities=24% Similarity=0.303 Sum_probs=96.4
Q ss_pred ChHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHH
Q 008723 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 263 ~p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlA 342 (556)
...++.+.|++.++|++.+++.+.+.+... .+ .. ..++.+++|+||||||||++|
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~-----~~------------------~~~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KL-----TK------------------SLKGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HH-----SS------------------SCCSCEEEEESSSSSSHHHHH
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hh-----cc------------------cCCCCEEEEECCCCCCHHHHH
Confidence 345566778888999999999997766421 11 00 013578999999999999999
Q ss_pred HHHHHHhCCCeeeecccccccc--------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccccc
Q 008723 343 KTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (556)
Q Consensus 343 raLA~~l~~~fv~i~~s~l~~s--------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~ 414 (556)
++||..++.+++.+++..+... .|+|.. ...+...|..+. ...+||||||||++..++..
T Consensus 126 r~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~------ 193 (543)
T 3m6a_A 126 KSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG------ 193 (543)
T ss_dssp HHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC-----------
T ss_pred HHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc------
Confidence 9999999999999998764321 244443 233334444432 24569999999999876321
Q ss_pred CchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 415 ~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
..++.||++||..... ..........++..+++||+|+|..
T Consensus 194 ----~~~~~LL~~ld~~~~~------~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 194 ----DPSSAMLEVLDPEQNS------SFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp --------CCGGGTCTTTTT------BCCCSSSCCCCBCSSCEEEEECSST
T ss_pred ----CHHHHHHHHHhhhhcc------eeecccCCeeecccceEEEeccCcc
Confidence 1678899999842221 1112223344667888999998864
No 35
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=1.6e-14 Score=157.86 Aligned_cols=175 Identities=27% Similarity=0.364 Sum_probs=117.6
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++|+.|.+.+.. +. .......++ ...+.+++|+||||||||++|++||.++
T Consensus 29 ~f~d-v~G~~~~k~~l~~lv~~-l~---~~~~~~~lg---------------~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 29 TFKD-VAGAEEAKEELKEIVEF-LK---NPSRFHEMG---------------ARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CTTS-SCSCHHHHHHHHHHHHH-HH---CGGGTTTTS---------------CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CHHH-cCCcHHHHHHHHHHHHH-hh---chhhhhhcc---------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 89999999999988752 11 111101100 1124679999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++.++.+ .++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.......+++.|+..|+
T Consensus 89 ~~~~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 89 RVPFITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp TCCEEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred CCCEEEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 99999999998874 366765 5667778776542 25789999999998765432111111122346788888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHH-HHhcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKT-ISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~-i~~rr~~~~i~f~~p~~~~ 489 (556)
|.. ..+.++++++++..+ +++. +++.||+..+.++.|+.+.
T Consensus 163 g~~-------------------~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 163 GFE-------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp GCC-------------------SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred ccc-------------------cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 521 112356666666655 3433 3445899999999998654
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.57 E-value=1.6e-16 Score=182.85 Aligned_cols=173 Identities=23% Similarity=0.290 Sum_probs=121.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
|+|++.+|+.|.+++...... ..........++.++||+||||||||++|++||++++.+|+
T Consensus 479 i~gl~~vk~~l~~~v~~~~~~------------------~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 479 IGGLEDVKRELQELVQYPVEH------------------PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp SSCCCCHHHHHHTTTTSSSSS------------------CTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred cccchhhhhhHHHHHHhhhhc------------------hHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 789999999888876421100 00011112234678999999999999999999999999999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ 434 (556)
.+++.++.. .|+|+. +..++.+|+.+... .++||||||||.+...+............++++.||..||+.
T Consensus 541 ~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~--- 611 (806)
T 1ypw_A 541 SIKGPELLT-MWFGES-EANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--- 611 (806)
T ss_dssp CCCCSSSTT-CCTTTS-SHHHHHHHHHHHHH----CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred EEechHhhh-hhcCcc-HHHHHHHHHHHHhc----CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc---
Confidence 999999884 589988 67788888877643 678999999999987764322111122355888888888741
Q ss_pred cCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhhh
Q 008723 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRANM 490 (556)
Q Consensus 435 ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~~ 490 (556)
....++++|+|+|..+ +++++. .+||+..|+|+.|+.+..
T Consensus 612 ----------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 612 ----------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp --------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred ----------------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHH
Confidence 1335677888888765 444443 349999999999986553
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=4.4e-16 Score=154.76 Aligned_cols=174 Identities=25% Similarity=0.358 Sum_probs=107.8
Q ss_pred HhhhccChHHHHHHHHHHHHHH-HHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~-~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+++ |+|++.+++.|.+++... +...+.. .....+.++||+||||||||++|++||+.+
T Consensus 10 ~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKD-MAGNEEAKEEVVEIVDFLKYPERYAN--------------------LGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STT-SSSCTTTHHHHHHHHHHHHCHHHHHH--------------------HSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHH-hCCcHHHHHHHHHHHHHHHChHHHHH--------------------CCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344 899999999999877521 0010000 001124679999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhccccc-ccCchHHHHHHHHHHH
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKML 428 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~-~~~s~~~v~~~LL~~L 428 (556)
+.+|+.+++.++.. .+.|.. +..++.+|..+.. ..++||||||+|.+...+...... .......+++.|+..|
T Consensus 69 ~~~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (268)
T 2r62_A 69 HVPFFSMGGSSFIE-MFVGLG-ASRVRDLFETAKK----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEM 142 (268)
T ss_dssp TCCCCCCCSCTTTT-SCSSSC-SSSSSTTHHHHHH----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTT
T ss_pred CCCEEEechHHHHH-hhcchH-HHHHHHHHHHHHh----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHh
Confidence 99999999998774 366655 3334445544432 257899999999998764221100 0000111455666666
Q ss_pred hccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHH-HHhcccccccccCChhhhh
Q 008723 429 EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKT-ISERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 429 Eg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~-i~~rr~~~~i~f~~p~~~~ 489 (556)
++.. ....++++|+|+|..+ ++.. ++..||+..+.|+.|+.++
T Consensus 143 ~~~~------------------~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 143 DGFG------------------SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp TCSS------------------CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred hCcc------------------cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 5310 0223467777777665 3333 3334888899999988655
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.56 E-value=1.4e-14 Score=144.02 Aligned_cols=139 Identities=21% Similarity=0.301 Sum_probs=83.7
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++|++.+++.+.+.+... .....++||+||||||||++|++||+.+
T Consensus 4 ~f~~-~ig~~~~~~~~~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 4 YKDN-LLGEANSFLEVLEQVSHL-----------------------------APLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------------------------TTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cccc-ceeCCHHHHHHHHHHHHH-----------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4555 689999888887766411 1123789999999999999999999988
Q ss_pred C---CCeeeecccccccc----CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 350 N---VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 350 ~---~~fv~i~~s~l~~s----gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
. .+|+.++|+.+... .+.|.. ..............+..+.+++||||||+.+..+ +|+
T Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~ 118 (265)
T 2bjv_A 54 SRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQE 118 (265)
T ss_dssp TTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHH
T ss_pred CccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHH
Confidence 4 68999999876421 011111 0000000001112233456789999999999877 899
Q ss_pred HHHHHHhcccc-ccCCCCcccCCCCCceEEecCceEEEecCCC
Q 008723 423 ALLKMLEGTIV-NVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (556)
Q Consensus 423 ~LL~~LEg~~v-~ipe~g~r~~~~~~~ivid~rnii~I~t~n~ 464 (556)
.|+++|+...+ .+. .......++.+|+|+|.
T Consensus 119 ~Ll~~l~~~~~~~~g-----------~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 119 KLLRVIEYGELERVG-----------GSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHHHHCEECCCC-----------C--CEECCCEEEEEESS
T ss_pred HHHHHHHhCCeecCC-----------CcccccCCeEEEEecCc
Confidence 99999994322 111 01123345677887774
No 39
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.55 E-value=1.7e-14 Score=147.86 Aligned_cols=150 Identities=24% Similarity=0.344 Sum_probs=94.2
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---C
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---N 350 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~ 350 (556)
.|+|++.+.+.+...+.. ++....+|||+||||||||++|++||+.+ +
T Consensus 3 ~iig~s~~~~~~~~~~~~-----------------------------~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 53 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAM-----------------------------VAPSDATVLIHGDSGTGKELVARALHACSARSD 53 (304)
T ss_dssp CCCCCSHHHHHHHHHHHH-----------------------------HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS
T ss_pred CcEECCHHHHHHHHHHHH-----------------------------HhCCCCcEEEECCCCchHHHHHHHHHHhCcccC
Confidence 378888888777776641 12234789999999999999999999976 5
Q ss_pred CCeeeecccccccc----CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHH
Q 008723 351 VPFVIADATTLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (556)
Q Consensus 351 ~~fv~i~~s~l~~s----gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~ 426 (556)
.+|+.++|..+... .++|.... ............+..+.+++||||||+.+... +|..|++
T Consensus 54 ~~~v~v~~~~~~~~l~~~~lfg~~~g-~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~Ll~ 118 (304)
T 1ojl_A 54 RPLVTLNCAALNESLLESELFGHEKG-AFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRLLR 118 (304)
T ss_dssp SCCCEEECSSCCHHHHHHHHTCCCSS-CCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHHHH
T ss_pred CCeEEEeCCCCChHHHHHHhcCcccc-ccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHHHH
Confidence 68999999865421 11111100 00000001112233456789999999999877 8999999
Q ss_pred HHhcccc-ccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccc
Q 008723 427 MLEGTIV-NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (556)
Q Consensus 427 ~LEg~~v-~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~ 479 (556)
+|+...+ .+... .....++.+|+++|. ++.+.+..++|+..
T Consensus 119 ~l~~~~~~~~g~~-----------~~~~~~~riI~atn~-~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 119 AIQEREVQRVGSN-----------QTISVDVRLIAATHR-DLAEEVSAGRFRQD 160 (304)
T ss_dssp HHHSSBCCBTTBC-----------CCCBCCCEEEEEESS-CHHHHHHHTSSCHH
T ss_pred HHhcCEeeecCCc-----------ccccCCeEEEEecCc-cHHHHHHhCCcHHH
Confidence 9994322 22111 112345677887774 46666666555543
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.54 E-value=5.2e-15 Score=151.77 Aligned_cols=176 Identities=26% Similarity=0.376 Sum_probs=114.0
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHH
Q 008723 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 265 ~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAra 344 (556)
..+...+.+.|+||+++++.+..++.. ..++||+||||||||++|++
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------------------------~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT---------------------------------GGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH---------------------------------TCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc---------------------------------CCeEEEECCCCCcHHHHHHH
Confidence 346667777799999999888777641 26899999999999999999
Q ss_pred HHHHhCCCeeeecccc-ccccCccccchHHHHHHHHHhcccchhc--cCCeEEEEecccccchhhhcccccccCchHHHH
Q 008723 345 LARHVNVPFVIADATT-LTQAGYVGEDVESILYKLLAQAEFNVEA--AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (556)
Q Consensus 345 LA~~l~~~fv~i~~s~-l~~sgyvG~~~e~~l~~lf~~a~~~l~~--a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~ 421 (556)
+|+.++.+++.+++.. .....+.|...... ......+.. -..+||||||||.+..+ ++
T Consensus 66 la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~-----~~~~~~~~~g~l~~~vl~iDEi~~~~~~--------------~~ 126 (331)
T 2r44_A 66 LAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQ-----HKGNFEVKKGPVFSNFILADEVNRSPAK--------------VQ 126 (331)
T ss_dssp HHHHTTCCEEEEECCTTCCHHHHHEEEEEET-----TTTEEEEEECTTCSSEEEEETGGGSCHH--------------HH
T ss_pred HHHHhCCCeEEEecCCCCChhhcCCceeecC-----CCCceEeccCcccccEEEEEccccCCHH--------------HH
Confidence 9999999999988752 11111111110000 000000100 12379999999998877 89
Q ss_pred HHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHH
Q 008723 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (556)
Q Consensus 422 ~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~ 501 (556)
+.|++.|+...+.+... ......++++|+|+|..+.. +
T Consensus 127 ~~Ll~~l~~~~~~~~g~----------~~~~~~~~~viat~np~~~~--------------~------------------ 164 (331)
T 2r44_A 127 SALLECMQEKQVTIGDT----------TYPLDNPFLVLATQNPVEQE--------------G------------------ 164 (331)
T ss_dssp HHHHHHHHHSEEEETTE----------EEECCSSCEEEEEECTTCCS--------------C------------------
T ss_pred HHHHHHHhcCceeeCCE----------EEECCCCEEEEEecCCCccc--------------C------------------
Confidence 99999999655544211 11223456777777743200 0
Q ss_pred HHHhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHHhhh
Q 008723 502 SLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (556)
Q Consensus 502 ~l~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl~~~ 546 (556)
.+.+.+.+++||+..+.+..++.++..+|+...
T Consensus 165 ------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 165 ------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRV 197 (331)
T ss_dssp ------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHH
T ss_pred ------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhc
Confidence 012567788888777888888888888777543
No 41
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.53 E-value=9.9e-15 Score=157.39 Aligned_cols=105 Identities=28% Similarity=0.372 Sum_probs=81.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC--CC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--VP 352 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~--~~ 352 (556)
|+||+++++.+...+... ... ..++.++||+||||||||++|+++|++++ .+
T Consensus 39 iiG~~~~~~~l~~~~~~~-----~~~---------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~ 92 (456)
T 2c9o_A 39 LVGQENAREACGVIVELI-----KSK---------------------KMAGRAVLLAGPPGTGKTALALAIAQELGSKVP 92 (456)
T ss_dssp EESCHHHHHHHHHHHHHH-----HTT---------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSC
T ss_pred ccCHHHHHHHHHHHHHHH-----HhC---------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCce
Confidence 899999999998877421 010 11347899999999999999999999998 89
Q ss_pred eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcc
Q 008723 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (556)
Q Consensus 353 fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~ 409 (556)
|+.++++++. ..|+|.. +. +.++|..+.. .....++||||||||.+...+...
T Consensus 93 ~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 93 FCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp EEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC----
T ss_pred EEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCC
Confidence 9999999988 4588877 44 8888887732 223478999999999999876543
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.53 E-value=8.6e-14 Score=141.36 Aligned_cols=137 Identities=24% Similarity=0.439 Sum_probs=92.8
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ ++|++.+++.|...+..... . .....++||+||||||||++|+++|+.++
T Consensus 11 ~~~-~ig~~~~~~~l~~~l~~~~~----~----------------------~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 11 LDE-YIGQERLKQKLRVYLEAAKA----R----------------------KEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp TTT-CCSCHHHHHHHHHHHHHHHH----H----------------------CSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred HHH-hhCHHHHHHHHHHHHHHHHc----c----------------------CCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 79999999998887752210 0 01236899999999999999999999999
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.+|+.+++..+.. ...+...+.. ....+++||||||+.+... .++.|+.+|+.
T Consensus 64 ~~~~~~~~~~~~~--------~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~ 116 (324)
T 1hqc_A 64 VNLRVTSGPAIEK--------PGDLAAILAN-----SLEEGDILFIDEIHRLSRQ--------------AEEHLYPAMED 116 (324)
T ss_dssp CCEEEECTTTCCS--------HHHHHHHHTT-----TCCTTCEEEETTTTSCCHH--------------HHHHHHHHHHH
T ss_pred CCEEEEeccccCC--------hHHHHHHHHH-----hccCCCEEEEECCcccccc--------------hHHHHHHHHHh
Confidence 9999998876542 2233333332 1236789999999999876 88999999995
Q ss_pred ccccc-CCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 431 TIVNV-PEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 431 ~~v~i-pe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
..+.+ .... .....+.....++++|++++..
T Consensus 117 ~~~~~v~~~~----~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 117 FVMDIVIGQG----PAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp SEEEECCSSS----SSCCCEEEECCCCEEEEEESCC
T ss_pred hhhHHhcccc----ccccccccCCCCEEEEEeCCCc
Confidence 43321 1110 1112233444567788877753
No 43
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.52 E-value=1.6e-13 Score=135.43 Aligned_cols=175 Identities=27% Similarity=0.357 Sum_probs=108.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++++.+...+.. |... ..+ +.+. ...+.+++|+||||||||+++++||..+
T Consensus 14 ~~~~-i~g~~~~~~~l~~l~~~-~~~~--~~~--------------~~~~--~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 14 TFKD-VAGAEEAKEELKEIVEF-LKNP--SRF--------------HEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CGGG-CCSCHHHHHHHHHHHHH-HHCH--HHH--------------HHTT--CCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCCcHHHHHHHHHHHHH-HHCH--HHH--------------HHcC--CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 89999999999887652 2110 000 0000 0113569999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+++.+++.++... +.+.. ...+..+|+.+.. ..++++||||||.+...+..............++.|+..|+
T Consensus 74 ~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 74 RVPFITASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp TCCEEEEEHHHHHHS-CTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHh
Confidence 999999998877643 45544 4556677766542 25789999999988765432110111112346778888888
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCcC-hHHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~d-l~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
|... .+.++++++++..+ +++.+. +.||+..+.++.|+.++
T Consensus 148 g~~~-------------------~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 148 GFEK-------------------DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp TCCT-------------------TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred CCCC-------------------CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 4211 12344555555444 444433 34888899999888654
No 44
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.52 E-value=1.4e-13 Score=138.24 Aligned_cols=175 Identities=26% Similarity=0.335 Sum_probs=107.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++++.+...+.. |... . ..+.+.. ..+.+++|+|||||||||++++|+..+
T Consensus 38 ~~~~-i~g~~~~~~~l~~l~~~-~~~~--~--------------~l~~~~~--~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 38 TFKD-VAGAEEAKEELKEIVEF-LKNP--S--------------RFHEMGA--RIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CGGG-SSSCHHHHHHHHHHHHH-HHCH--H--------------HHHHTTC--CCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHH-hCChHHHHHHHHHHHHH-HHCH--H--------------HHHHcCC--CCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4565 89999999999887652 2110 0 0000000 113569999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+++.+++.++... +.+.. ...+..+|+.+.. ..++++||||||.+...+...............+.|+..|+
T Consensus 98 ~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 98 RVPFITASGSDFVEM-FVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp TCCEEEEEHHHHHHS-TTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred CCCEEEecHHHHHHH-HhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 999999998877643 44443 4556677766532 25789999999988654332100011111335566777776
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHH-hcccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTIS-ERRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~-~rr~~~~i~f~~p~~~~ 489 (556)
|... .+.++++++++.. .+++.+. +.+|+..+.++.|+.++
T Consensus 172 gg~~-------------------~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 172 GFEK-------------------DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp TCCT-------------------TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred CCCC-------------------CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 4111 1223444444444 4555544 35899999999998654
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.51 E-value=1.1e-14 Score=132.77 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=90.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---CC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~ 351 (556)
++|++.+.+.+.+.+.. ++....+|||+||||||||++|++||+.. +.
T Consensus 3 iiG~s~~~~~~~~~~~~-----------------------------~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQ-----------------------------LSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp -CCSSHHHHHHHHHHHH-----------------------------HTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred ceeCCHHHHHHHHHHHH-----------------------------HhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 67888888777776641 12235789999999999999999999987 67
Q ss_pred CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhcc
Q 008723 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (556)
Q Consensus 352 ~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~ 431 (556)
+|+ ++|..+.+. .....++.. +.+++|||||||.+... +|..|+.+|+.
T Consensus 54 ~~v-~~~~~~~~~--------~~~~~~~~~-------a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~~- 102 (145)
T 3n70_A 54 EFV-YRELTPDNA--------PQLNDFIAL-------AQGGTLVLSHPEHLTRE--------------QQYHLVQLQSQ- 102 (145)
T ss_dssp CCE-EEECCTTTS--------SCHHHHHHH-------HTTSCEEEECGGGSCHH--------------HHHHHHHHHHS-
T ss_pred CEE-EECCCCCcc--------hhhhcHHHH-------cCCcEEEEcChHHCCHH--------------HHHHHHHHHhh-
Confidence 999 999876532 112223332 25679999999999877 89999999852
Q ss_pred ccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccC
Q 008723 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFG 483 (556)
Q Consensus 432 ~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~ 483 (556)
...++.+|+++| .++++.+...+|+..++|.
T Consensus 103 --------------------~~~~~~~I~~t~-~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 103 --------------------EHRPFRLIGIGD-TSLVELAASNHIIAELYYC 133 (145)
T ss_dssp --------------------SSCSSCEEEEES-SCHHHHHHHSCCCHHHHHH
T ss_pred --------------------cCCCEEEEEECC-cCHHHHHHcCCCCHHHHHH
Confidence 112345666666 4677777777776555443
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.51 E-value=4.8e-14 Score=152.14 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=75.5
Q ss_pred HHhhhccChHHHH---HHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHH
Q 008723 270 GLDKFVIGQEKAK---KVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 270 ~Ld~~VvGqe~ak---~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
.|++ |+||+.++ +.|..++... ...++||+||||||||++|++||
T Consensus 24 ~l~~-ivGq~~~~~~~~~L~~~i~~~-------------------------------~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 24 NLAQ-YIGQQHLLAAGKPLPRAIEAG-------------------------------HLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp STTT-CCSCHHHHSTTSHHHHHHHHT-------------------------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHH-hCCcHHHHhchHHHHHHHHcC-------------------------------CCcEEEEECCCCCcHHHHHHHHH
Confidence 4555 89999999 6777766421 11579999999999999999999
Q ss_pred HHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHH
Q 008723 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (556)
Q Consensus 347 ~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~ 426 (556)
+.++.+|+.+++.... ...+++++..+........++||||||||.+... .|+.|+.
T Consensus 72 ~~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~ 128 (447)
T 3pvs_A 72 RYANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLP 128 (447)
T ss_dssp HHTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHH
T ss_pred HHhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHH
Confidence 9999999998875422 2345555555443333457899999999999776 7889999
Q ss_pred HHh
Q 008723 427 MLE 429 (556)
Q Consensus 427 ~LE 429 (556)
.||
T Consensus 129 ~le 131 (447)
T 3pvs_A 129 HIE 131 (447)
T ss_dssp HHH
T ss_pred HHh
Confidence 998
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.47 E-value=4.4e-14 Score=141.13 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=82.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccch---HHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV---ESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~---e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
..++||+||||||||++|+++|+.++.+|+.+++.+. ++|... ...++.+|..+. ...++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhh
Confidence 4789999999999999999999999999999988753 344332 234555555432 23578999999999
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHH-HHhccccccc
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT-ISERRQDSSI 480 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~-i~~rr~~~~i 480 (556)
+...+.. +.. ....+++.|+.++++.. ....++++|+|++..+..+. ...++|...+
T Consensus 136 l~~~~~~---~~~-~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i 193 (272)
T 1d2n_A 136 LLDYVPI---GPR-FSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTI 193 (272)
T ss_dssp HTTCBTT---TTB-CCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHHHHHHTTCTTTSSEEE
T ss_pred hhccCCC---Chh-HHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChhhcchhhhhcccceEE
Confidence 8544221 111 11336677777765210 02245677777776543332 3345665555
Q ss_pred ccCC
Q 008723 481 GFGA 484 (556)
Q Consensus 481 ~f~~ 484 (556)
.++.
T Consensus 194 ~~p~ 197 (272)
T 1d2n_A 194 HVPN 197 (272)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 5543
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.45 E-value=4.7e-13 Score=136.61 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=76.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ ++|++++++.|..++... ..+..+|+.||||||||++|+++|+.+
T Consensus 24 ~~~~-ivg~~~~~~~l~~~l~~~------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 24 TIDE-CILPAFDKETFKSITSKG------------------------------KIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTT-SCCCHHHHHHHHHHHHTT------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CHHH-HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4555 799999999888877510 012457888889999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHh-cccchhccCCeEEEEecccccc-hhhhcccccccCchHHHHHHHHHH
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQ-AEFNVEAAQQGMVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKM 427 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~-a~~~l~~a~~~VLfLDEID~l~-~~r~~~~~~~~~s~~~v~~~LL~~ 427 (556)
+.+++++++++.. ...++..+.. +........+.||||||+|.+. .+ .++.|+++
T Consensus 73 ~~~~~~i~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~ 129 (324)
T 3u61_B 73 NADMMFVNGSDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSF 129 (324)
T ss_dssp TEEEEEEETTTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHH
T ss_pred CCCEEEEcccccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHH
Confidence 9999999986532 2223332222 1111112356899999999997 55 88999999
Q ss_pred Hh
Q 008723 428 LE 429 (556)
Q Consensus 428 LE 429 (556)
|+
T Consensus 130 le 131 (324)
T 3u61_B 130 ME 131 (324)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.45 E-value=4.4e-13 Score=138.75 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=48.2
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ ++|++.+++.+..++... ... ..++.++||+||||||||++|+++|+.++
T Consensus 43 ~~~-ivG~~~~~~~l~~l~~~~-----~~~---------------------~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQG-MVGQLAARRAAGVVLEMI-----REG---------------------KIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETT-EESCHHHHHHHHHHHHHH-----HTT---------------------CCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhh-ccChHHHHHHHHHHHHHH-----HcC---------------------CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445 799999999877665311 010 01236899999999999999999999997
Q ss_pred C--Ceeeecccccc
Q 008723 351 V--PFVIADATTLT 362 (556)
Q Consensus 351 ~--~fv~i~~s~l~ 362 (556)
. +|+.+++..+.
T Consensus 96 ~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 96 PDTPFTAIAGSEIF 109 (368)
T ss_dssp SSCCEEEEEGGGGS
T ss_pred ccCCcccccchhhh
Confidence 4 78888876543
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=2.2e-12 Score=121.58 Aligned_cols=105 Identities=28% Similarity=0.417 Sum_probs=71.6
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
+++ ++|++.+++.|...+... ...+++|+||+|||||++|+.+++.+
T Consensus 16 ~~~-~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 16 LDE-VVGQDEVIQRLKGYVERK-------------------------------NIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-HcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 344 799999999888877411 12469999999999999999999886
Q ss_pred ----CCCeeeeccccccccCccccchHHHHHHHHHhccc--chhccCCeEEEEecccccchhhhcccccccCchHHHHHH
Q 008723 350 ----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEF--NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (556)
Q Consensus 350 ----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~--~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~ 423 (556)
...++.+++..... ...+...+..... ......+.+|||||+|.+... .++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~ 121 (226)
T 2chg_A 64 GENWRDNFIEMNASDERG--------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAA 121 (226)
T ss_dssp GGGGGGGEEEEETTCTTC--------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHH
T ss_pred ccccccceEEeccccccC--------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHH
Confidence 33566666654321 1122222211111 112246789999999998776 7888
Q ss_pred HHHHHh
Q 008723 424 LLKMLE 429 (556)
Q Consensus 424 LL~~LE 429 (556)
|+.+|+
T Consensus 122 l~~~l~ 127 (226)
T 2chg_A 122 LRRTME 127 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=3.2e-13 Score=124.44 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=103.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----- 349 (556)
++|++++++.+...+.. ....+++|+||+|||||++|+++++.+
T Consensus 24 ~~g~~~~~~~l~~~l~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 72 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 72 (195)
T ss_dssp CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCS
T ss_pred cccchHHHHHHHHHHhc-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999988887776531 123689999999999999999999987
Q ss_pred -----CCCeeeecccccccc-CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHH
Q 008723 350 -----NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (556)
Q Consensus 350 -----~~~fv~i~~s~l~~s-gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~ 423 (556)
+.+++.+++.++... .+.+.. ...+..++.... ....+.||||||+|.+...... ..... +++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~~~~~-----~~~~ 142 (195)
T 1jbk_A 73 PEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-----AGNM 142 (195)
T ss_dssp CGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------CCC-----CHHH
T ss_pred chhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-cchHH-----HHHH
Confidence 677888888766421 233332 344445554321 1235679999999998754221 11111 5677
Q ss_pred HHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHH
Q 008723 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (556)
Q Consensus 424 LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l 503 (556)
|..+++. .++.+|++++..+..+.
T Consensus 143 l~~~~~~-----------------------~~~~~i~~~~~~~~~~~--------------------------------- 166 (195)
T 1jbk_A 143 LKPALAR-----------------------GELHCVGATTLDEYRQY--------------------------------- 166 (195)
T ss_dssp HHHHHHT-----------------------TSCCEEEEECHHHHHHH---------------------------------
T ss_pred HHHhhcc-----------------------CCeEEEEeCCHHHHHHH---------------------------------
Confidence 7777651 23455666653211100
Q ss_pred HhhcCchHHHHcCCCHHHhccCCceeeCCCCCHHHHHHHH
Q 008723 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (556)
Q Consensus 504 ~~~l~~~dl~~~~l~Pell~R~~~iI~f~~ls~eeL~qIl 543 (556)
..+.+.+.+||. .+.+..++.+++.+|+
T Consensus 167 -----------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 -----------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -----------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -----------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 014688999998 6899999999988775
No 52
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.42 E-value=1.2e-12 Score=137.80 Aligned_cols=147 Identities=25% Similarity=0.389 Sum_probs=107.1
Q ss_pred CCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC--CeeeeccccccccCccccchHHHHHHHHHh
Q 008723 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 304 ~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~--~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
..+.+..+..+.+.+..++....++++.|++||||+++|++++...+. .|+.++|..+.+. -...++|..
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~--------~~~~~lfg~ 202 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE--------LAESELFGH 202 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT--------THHHHHHEE
T ss_pred ccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH--------HHHHHhcCc
Confidence 357778888888888888888899999999999999999999998854 3999999976532 112233322
Q ss_pred -----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCce
Q 008723 382 -----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSI 449 (556)
Q Consensus 382 -----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~i 449 (556)
..+.++.+++++||||||+.|... +|..|+++|+ +.+..+.+. ..+
T Consensus 203 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~~ 260 (368)
T 3dzd_A 203 EKGAFTGALTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGN--------QKI 260 (368)
T ss_dssp CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCC--------CBE
T ss_pred cccccCCcccccCChHhhcCCCeEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCC--------cce
Confidence 123355568899999999999988 9999999999 444443222 122
Q ss_pred EEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 450 vid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
..++.+|++++ .++.+.+..++|+..++|..
T Consensus 261 ---~~~~rii~at~-~~l~~~v~~g~fr~dL~~rl 291 (368)
T 3dzd_A 261 ---EVDIRVISATN-KNLEEEIKKGNFREDLYYRL 291 (368)
T ss_dssp ---ECCCEEEEEES-SCHHHHHHTTSSCHHHHHHH
T ss_pred ---eeeeEEEEecC-CCHHHHHHcCCccHHHHHHh
Confidence 23566777776 67888888877776665543
No 53
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=4.3e-13 Score=154.40 Aligned_cols=173 Identities=25% Similarity=0.381 Sum_probs=121.5
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++++++.|.+.+...+. +..+... ....++.+|||+||||||||++|++||.++
T Consensus 202 ~~~d-i~G~~~~~~~l~e~i~~~l~---~~~~~~~---------------l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 202 GYDD-VGGCRKQLAQIKEMVELPLR---HPALFKA---------------IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CGGG-CCSCSGGGGHHHHHHHHHHH---CGGGGTS---------------SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CHHH-hCChHHHHHHHHHHHHHHhh---CHHHHHh---------------cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4555 89999999999999864322 1111111 112345789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+|+.+++.++.. .+.|.. +..+..+|+.+.. ..+++|||||||.+...+... .......+++.|+.+|+
T Consensus 263 ~~~~i~v~~~~l~~-~~~g~~-~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 263 GAFFFLINGPEIMS-KLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TCEEEEEEHHHHSS-SSTTHH-HHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEchHhhh-hhhhhH-HHHHHHHHHHHHh----cCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhh
Confidence 99999999998874 467766 6777888877653 267899999999988764321 11122458889999998
Q ss_pred ccccccCCCCcccCCCCCceEEecCceEEEecCCCc-ChHHHHHh-cccccccccCChhhhh
Q 008723 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DLEKTISE-RRQDSSIGFGAPVRAN 489 (556)
Q Consensus 430 g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~-dl~~~i~~-rr~~~~i~f~~p~~~~ 489 (556)
+... ..++++|++++.. .++..+.+ .+|+..+.+..|..+.
T Consensus 334 g~~~-------------------~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 334 GLKQ-------------------RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp SSCT-------------------TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred hhcc-------------------cccEEEecccCCchhcCHHHhcccccccccccCCCCHHH
Confidence 5211 1245566666654 34444443 4788888888887544
No 54
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=9.7e-13 Score=143.83 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=80.4
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
...+...+.+.|+|++++++.+..++. ...+|||+||||||||++|+
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~---------------------------------~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAAL---------------------------------SGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHH---------------------------------HTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh---------------------------------cCCeeEeecCchHHHHHHHH
Confidence 356788888889999999998877764 13789999999999999999
Q ss_pred HHHHHhCC--CeeeeccccccccCccccchHHHH--HHHHHhcc-cchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 344 TLARHVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLAQAE-FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 344 aLA~~l~~--~fv~i~~s~l~~sgyvG~~~e~~l--~~lf~~a~-~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
+||+.++. +|..+.+.......++|....... ...+..+. ..+ ..++|||||||+++.++
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 99998843 455544432111122221101000 11121111 111 13569999999988877
Q ss_pred HHHHHHHHHHhcccccc
Q 008723 419 GVQQALLKMLEGTIVNV 435 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~i 435 (556)
+++.|+.+|+.+.+.+
T Consensus 125 -~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN 140 (500)
T ss_dssp -HHHHHHHHHHSSEEEC
T ss_pred -HHHHHHHHHHHHhccC
Confidence 9999999999665554
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.41 E-value=9.8e-13 Score=134.79 Aligned_cols=150 Identities=18% Similarity=0.286 Sum_probs=89.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee----eecccccccc----------------Cc----cccchHHHH-----H
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV----IADATTLTQA----------------GY----VGEDVESIL-----Y 376 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv----~i~~s~l~~s----------------gy----vG~~~e~~l-----~ 376 (556)
.++||+||||||||++|+++|+.++...+ .++|...... .+ .+......+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 67999999999999999999999863100 0122211100 00 111111111 1
Q ss_pred HHHHhc-----ccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEE
Q 008723 377 KLLAQA-----EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQM 451 (556)
Q Consensus 377 ~lf~~a-----~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivi 451 (556)
..+... ...+..+.++|||||||+.+..+ +++.|+++|+.....+...+ ....
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g--------~~~~ 183 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDG--------LSIR 183 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTT--------CCEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecc--------eEEe
Confidence 222222 12223346889999999999877 89999999995332222111 1122
Q ss_pred ecCceEEEecCCCcChHHHHHhcccccccccCChhhhhhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCCceeeC
Q 008723 452 DTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSL 531 (556)
Q Consensus 452 d~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~~iI~f 531 (556)
...++++|+|+|..+ ..+.+.+++||+..+.+
T Consensus 184 ~~~~~~li~~~n~~~------------------------------------------------~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 184 HPARFVLVGSGNPEE------------------------------------------------GDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp EECCEEEEEEECSCS------------------------------------------------CCCCHHHHTTCSEEEEC
T ss_pred eCCceEEEEEeCCCC------------------------------------------------CCCCHHHHhhcceEEEc
Confidence 234678888877421 01678999999888899
Q ss_pred CCC-CHHHHHHHHhh
Q 008723 532 TAL-TEDQLVKVLTE 545 (556)
Q Consensus 532 ~~l-s~eeL~qIl~~ 545 (556)
.++ +.++..+|+..
T Consensus 216 ~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 216 LSPRDVETRVEVIRR 230 (350)
T ss_dssp CCCCSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 988 45555567654
No 56
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.41 E-value=5.3e-12 Score=133.49 Aligned_cols=148 Identities=17% Similarity=0.333 Sum_probs=110.9
Q ss_pred cCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeeccccccccCccccchHHHHHHHH
Q 008723 303 KGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLL 379 (556)
Q Consensus 303 ~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s~l~~sgyvG~~~e~~l~~lf 379 (556)
.-.+.+..|+.+.+.+..++....+|+|.|++||||+++|++|+.... .+|+.++|+.+.+. -.-.++|
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~--------~~~~elf 209 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD--------IFEAELF 209 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH--------HHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH--------HHHHHhc
Confidence 346788899999999999999999999999999999999999998874 68999999876421 1122333
Q ss_pred Hh-----------cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCC
Q 008723 380 AQ-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGD 447 (556)
Q Consensus 380 ~~-----------a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~ 447 (556)
.. ....++.+++++||||||+.+... +|..|+++|+ +.+..+.+. .
T Consensus 210 g~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~--------~ 267 (387)
T 1ny5_A 210 GYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE--------------AQAKLLRVIESGKFYRLGGR--------K 267 (387)
T ss_dssp CBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH--------------HHHHHHHHHHHSEECCBTCC--------S
T ss_pred CCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------c
Confidence 32 123455677899999999999988 9999999999 433333221 1
Q ss_pred ceEEecCceEEEecCCCcChHHHHHhcccccccccCC
Q 008723 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (556)
Q Consensus 448 ~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~ 484 (556)
. ...++.+|+|+| .++.+.+..++|+..++|..
T Consensus 268 ~---~~~~~rii~at~-~~l~~~~~~g~fr~dl~~rl 300 (387)
T 1ny5_A 268 E---IEVNVRILAATN-RNIKELVKEGKFREDLYYRL 300 (387)
T ss_dssp B---EECCCEEEEEES-SCHHHHHHTTSSCHHHHHHH
T ss_pred e---eeccEEEEEeCC-CCHHHHHHcCCccHHHHHhh
Confidence 1 234566777776 67888888888887777654
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.39 E-value=3.5e-14 Score=129.25 Aligned_cols=96 Identities=19% Similarity=0.337 Sum_probs=73.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
++|++.+++.+.+.+... +....+|||+||||||||++|+++|+... +|+
T Consensus 6 ~iG~s~~~~~l~~~~~~~-----------------------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAA-----------------------------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp --CCCHHHHHHHHHHHHH-----------------------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred ceeCCHHHHHHHHHHHHH-----------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 789998888888777521 11347899999999999999999999888 999
Q ss_pred eeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHhc
Q 008723 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 355 ~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LEg 430 (556)
.++|.++... ....++.. +.+++|||||||.+..+ +|..|+++|+.
T Consensus 56 ~~~~~~~~~~---------~~~~~~~~-------a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 56 SPARVEYLID---------MPMELLQK-------AEGGVLYVGDIAQYSRN--------------IQTGITFIIGK 101 (143)
T ss_dssp CCSSTTHHHH---------CHHHHHHH-------TTTSEEEEEECTTCCHH--------------HHHHHHHHHHH
T ss_pred EechhhCChH---------hhhhHHHh-------CCCCeEEEeChHHCCHH--------------HHHHHHHHHHh
Confidence 9999876532 12333433 24679999999999877 89999999983
No 58
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.2e-13 Score=154.07 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=94.5
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
...+...+...|+||+.+|+.|..++.. +..... . . .......+|||+||||||||++|+
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~--------------g~~~~~---~-~--~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFG--------------GVPKVL---E-D--TRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTC--------------CCCEET---T-T--TEECCSCCEEEEESSCCTHHHHHH
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhC--------------CCcccc---c-C--CCcCCCcceEEECCCchHHHHHHH
Confidence 4457777888899999999877554420 000000 0 0 112234599999999999999999
Q ss_pred HHHHHhCCCeeee----ccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 344 TLARHVNVPFVIA----DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 344 aLA~~l~~~fv~i----~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
++|+.+...++.. ++..+... .........+......+..+.++||||||||++.++
T Consensus 346 ~la~~~~r~~~~~~~~~~~~~l~~~-----~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------------- 406 (595)
T 3f9v_A 346 FISRVAPRAVYTTGKGSTAAGLTAA-----VVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------------- 406 (595)
T ss_dssp SSSTTCSCEECCCTTCSTTTTSEEE-----CSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------
T ss_pred HHHHhCCCceecCCCccccccccce-----eeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------
Confidence 9999987655432 22222211 100000000111122233456789999999999887
Q ss_pred HHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 420 v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
+++.|+++||...+.+...+ .......++.+|+|+|..
T Consensus 407 ~q~~Ll~~le~~~i~i~~~g--------~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 407 DRVAIHEAMEQQTVSIAKAG--------IVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp HHHHHHHHHHSSSEEEESSS--------SEEEECCCCEEEEEECCT
T ss_pred HhhhhHHHHhCCEEEEecCC--------cEEEecCceEEEEEcCCc
Confidence 89999999996665543222 122233567788888864
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.7e-12 Score=130.34 Aligned_cols=173 Identities=12% Similarity=0.127 Sum_probs=111.9
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---
Q 008723 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (556)
Q Consensus 273 ~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l--- 349 (556)
+.+.|.++..+.|...|..... . ..+.+++|+||||||||++++.+++++
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--------~-------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--------S-------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------T-------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHhc--------C-------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3367788888888777753211 0 134789999999999999999999998
Q ss_pred -------CCCeeeecccccccc---------Ccccc-----chHHHHHHHHHhcccchhccCCeEEEEecccccchhhhc
Q 008723 350 -------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (556)
Q Consensus 350 -------~~~fv~i~~s~l~~s---------gyvG~-----~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~ 408 (556)
...++.++|..+... .+.|. .....+..+|..... ......||||||||.+. .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~--- 146 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S--- 146 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C---
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c---
Confidence 346788998765422 01111 113455666654311 12356899999999987 2
Q ss_pred ccccccCchHHHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCcChHHHHHhcccccccccCChhhh
Q 008723 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (556)
Q Consensus 409 ~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~dl~~~i~~rr~~~~i~f~~p~~~ 488 (556)
..++-.|+++.+ .+..++++|+.+|..++.+..
T Consensus 147 ---------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~~~----------------- 179 (318)
T 3te6_A 147 ---------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIREQ----------------- 179 (318)
T ss_dssp ---------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCHHH-----------------
T ss_pred ---------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccchhh-----------------
Confidence 014444444432 134457778877754431110
Q ss_pred hhccccchhHhHHHHHhhcCchHHHHcCCCHHHhccCC-ceeeCCCCCHHHHHHHHhhhHHHHhhh
Q 008723 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGQI 553 (556)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~l~~~dl~~~~l~Pell~R~~-~iI~f~~ls~eeL~qIl~~~~~~l~kq 553 (556)
+.+.+.+|+. .++.|.+++.+|+.+|+..-+..+.+.
T Consensus 180 ----------------------------L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~ 217 (318)
T 3te6_A 180 ----------------------------INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKP 217 (318)
T ss_dssp ----------------------------HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_pred ----------------------------cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcc
Confidence 1245567776 589999999999999999888876543
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=2.9e-11 Score=114.91 Aligned_cols=111 Identities=26% Similarity=0.302 Sum_probs=70.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
++|++.+++.|...+... ..+..++|+||+|||||++|+.+++.+.....
T Consensus 25 ~~g~~~~~~~l~~~l~~~------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~ 74 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 74 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC
T ss_pred HhCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999988877411 01246999999999999999999998854221
Q ss_pred ee--ccc--------------cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 355 IA--DAT--------------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 355 ~i--~~s--------------~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
.. .+. ++.............+..++...........+.+|||||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~------------- 141 (250)
T 1njg_A 75 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------- 141 (250)
T ss_dssp SCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------
T ss_pred CCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------
Confidence 10 000 0000000011113345555554432222345789999999998765
Q ss_pred HHHHHHHHHHh
Q 008723 419 GVQQALLKMLE 429 (556)
Q Consensus 419 ~v~~~LL~~LE 429 (556)
.++.|++.|+
T Consensus 142 -~~~~l~~~l~ 151 (250)
T 1njg_A 142 -SFNALLKTLE 151 (250)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHh
Confidence 7889999987
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.1e-11 Score=125.32 Aligned_cols=107 Identities=29% Similarity=0.408 Sum_probs=72.6
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ ++||+++++.|...+... ...++||+||+|||||++|+++|+.+.
T Consensus 24 ~~~-~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 24 LDD-IVGQEHIVKRLKHYVKTG-------------------------------SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TTT-CCSCHHHHHHHHHHHHHT-------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHH-hhCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344 899999999988877421 124699999999999999999999873
Q ss_pred C-----CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHH
Q 008723 351 V-----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (556)
Q Consensus 351 ~-----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL 425 (556)
. .++.+++++..... .....+....... .+....+.||||||+|.+..+ .++.|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~L~ 131 (327)
T 1iqp_A 72 GENWRHNFLELNASDERGIN----VIREKVKEFARTK--PIGGASFKIIFLDEADALTQD--------------AQQALR 131 (327)
T ss_dssp GGGHHHHEEEEETTCHHHHH----TTHHHHHHHHHSC--CGGGCSCEEEEEETGGGSCHH--------------HHHHHH
T ss_pred CCcccCceEEeeccccCchH----HHHHHHHHHHhhC--CcCCCCCeEEEEeCCCcCCHH--------------HHHHHH
Confidence 2 36666665432110 0011222222111 122246789999999999876 889999
Q ss_pred HHHh
Q 008723 426 KMLE 429 (556)
Q Consensus 426 ~~LE 429 (556)
++|+
T Consensus 132 ~~le 135 (327)
T 1iqp_A 132 RTME 135 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=8.4e-12 Score=127.78 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=71.8
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ |+|++++++.|...+... ...++||+||||||||++|+++|+.++
T Consensus 36 ~~~-i~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 36 LDE-VTAQDHAVTVLKKTLKSA-------------------------------NLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTT-CCSCCTTHHHHHHHTTCT-------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-hhCCHHHHHHHHHHHhcC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 899999998887776310 124699999999999999999998864
Q ss_pred ------CCeeeeccccccccCccccchHHHHHHHH---Hhccc---------chhccCCeEEEEecccccchhhhccccc
Q 008723 351 ------VPFVIADATTLTQAGYVGEDVESILYKLL---AQAEF---------NVEAAQQGMVYIDEVDKITKKAESLNIS 412 (556)
Q Consensus 351 ------~~fv~i~~s~l~~sgyvG~~~e~~l~~lf---~~a~~---------~l~~a~~~VLfLDEID~l~~~r~~~~~~ 412 (556)
..++.+++++.... ..++..+ ..... ........||||||+|.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------- 148 (353)
T 1sxj_D 84 GPDLMKSRILELNASDERGI--------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------- 148 (353)
T ss_dssp HHHHHTTSEEEECSSSCCCH--------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------
T ss_pred CCcccccceEEEccccccch--------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------
Confidence 35777777654311 1121111 11100 011235579999999999876
Q ss_pred ccCchHHHHHHHHHHHhc
Q 008723 413 RDVSGEGVQQALLKMLEG 430 (556)
Q Consensus 413 ~~~s~~~v~~~LL~~LEg 430 (556)
.++.|+++|+.
T Consensus 149 -------~~~~Ll~~le~ 159 (353)
T 1sxj_D 149 -------AQSALRRTMET 159 (353)
T ss_dssp -------HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHh
Confidence 78999999983
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.27 E-value=5.4e-12 Score=116.27 Aligned_cols=118 Identities=26% Similarity=0.352 Sum_probs=76.3
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
+++ ++|++.+++.+...+.. ....+++|+||+|||||++|+++++.+
T Consensus 21 ~~~-~~g~~~~~~~l~~~l~~-------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDP-VIGRDTEIRRAIQILSR-------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCC-CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cch-hhcchHHHHHHHHHHhC-------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 344 79999988877776531 123689999999999999999999987
Q ss_pred ---------CCCeeeecccccccc-CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHH
Q 008723 350 ---------NVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~~s-gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~ 419 (556)
+.+++.+++..+... .+.+.. ...+..++..... ...+.+|||||+|.+...+....... .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~-----~ 139 (187)
T 2p65_A 69 QGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEGAL-----D 139 (187)
T ss_dssp TTCSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTTSC-----C
T ss_pred hcCCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccccccch-----H
Confidence 667777877665421 122322 3344444443321 12567999999999874422111111 1
Q ss_pred HHHHHHHHHh
Q 008723 420 VQQALLKMLE 429 (556)
Q Consensus 420 v~~~LL~~LE 429 (556)
+++.|+.+++
T Consensus 140 ~~~~l~~~~~ 149 (187)
T 2p65_A 140 AGNILKPMLA 149 (187)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6777777776
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.1e-11 Score=125.22 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh------C
Q 008723 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV------N 350 (556)
Q Consensus 277 Gqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l------~ 350 (556)
||+++++.|..++... ...++||+||+|+|||++|+++|+.+ .
T Consensus 1 g~~~~~~~L~~~i~~~-------------------------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~ 49 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------------------------EGISILINGEDLSYPREVSLELPEYVEKFPPKA 49 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCT
T ss_pred ChHHHHHHHHHHHHCC-------------------------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccC
Confidence 6888888888877511 02579999999999999999999864 3
Q ss_pred CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 351 ~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
..|+.+++... ..+ ...++++++.+..........|+||||+|.++.. .+++||+.||
T Consensus 50 ~d~~~l~~~~~----~~~---id~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 50 SDVLEIDPEGE----NIG---IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTEEEECCSSS----CBC---HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCEEEEcCCcC----CCC---HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 35666665421 112 3345666665543322345689999999999877 8999999999
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.27 E-value=4.7e-12 Score=127.44 Aligned_cols=107 Identities=29% Similarity=0.424 Sum_probs=72.6
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
+++ ++|++.+++.|...+... ...++||+||+|||||++|+++|+.+
T Consensus 16 ~~~-~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 16 LDE-VVGQDEVIQRLKGYVERK-------------------------------NIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp GGG-SCSCHHHHHHHHTTTTTT-------------------------------CCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHH-HhCCHHHHHHHHHHHhCC-------------------------------CCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 444 799999999887765310 12469999999999999999999987
Q ss_pred ----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHH
Q 008723 350 ----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (556)
Q Consensus 350 ----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL 425 (556)
+.+++.+++++..... .....+........ +....+.||||||+|.+... .++.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~ 123 (319)
T 2chq_A 64 GENWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALR 123 (319)
T ss_dssp TTCHHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTG
T ss_pred CCcccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHH
Confidence 3357778876543211 11222222221111 22245789999999998876 788888
Q ss_pred HHHh
Q 008723 426 KMLE 429 (556)
Q Consensus 426 ~~LE 429 (556)
++|+
T Consensus 124 ~~le 127 (319)
T 2chq_A 124 RTME 127 (319)
T ss_dssp GGTS
T ss_pred HHHH
Confidence 8887
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.27 E-value=5.9e-11 Score=122.40 Aligned_cols=106 Identities=27% Similarity=0.337 Sum_probs=70.8
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ ++|++++++.|..++... ..+..+||+||+|||||++|+++|+.++
T Consensus 15 ~~~-~vg~~~~~~~L~~~l~~~------------------------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 15 FAD-VVGQEHVLTALANGLSLG------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTT-SCSCHHHHHHHHHHHHHT------------------------------CCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhh-ccCcHHHHHHHHHHHHhC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344 899999999988877411 0124589999999999999999999886
Q ss_pred CCe------------------------eeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhh
Q 008723 351 VPF------------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 351 ~~f------------------------v~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r 406 (556)
... +.++... ..+. ..++.++...........+.||||||+|.+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~- 134 (373)
T 1jr3_A 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH- 134 (373)
T ss_dssp CTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-
T ss_pred CCCCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH-
Confidence 421 1111111 0111 123444444332222345689999999998766
Q ss_pred hcccccccCchHHHHHHHHHHHh
Q 008723 407 ESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 407 ~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.++.|++.|+
T Consensus 135 -------------~~~~Ll~~le 144 (373)
T 1jr3_A 135 -------------SFNALLKTLE 144 (373)
T ss_dssp -------------HHHHHHHHHH
T ss_pred -------------HHHHHHHHHh
Confidence 7899999998
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=2.7e-11 Score=122.13 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=72.5
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+++ ++|++.+++.|...+... ...+++|+||+|+|||++|+++++.+.
T Consensus 20 ~~~-~~g~~~~~~~l~~~l~~~-------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 20 LSD-IVGNKETIDRLQQIAKDG-------------------------------NMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp GGG-CCSCTHHHHHHHHHHHSC-------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHH-HHCCHHHHHHHHHHHHcC-------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444 799999999888876410 124599999999999999999999862
Q ss_pred -----CCeeeeccccccccCccccchHHHHHHHHHhcc---cchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 351 -----VPFVIADATTLTQAGYVGEDVESILYKLLAQAE---FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 351 -----~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~---~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
..++.+++.+.. + ...+++++.... ..+....+.||||||+|.+... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~-----~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 125 (323)
T 1sxj_B 68 GRSYADGVLELNASDDR-----G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQ 125 (323)
T ss_dssp GGGHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHH
T ss_pred CCcccCCEEEecCcccc-----C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHH
Confidence 346667765432 1 223333333221 1111224789999999998876 788
Q ss_pred HHHHHHh
Q 008723 423 ALLKMLE 429 (556)
Q Consensus 423 ~LL~~LE 429 (556)
.|+++|+
T Consensus 126 ~L~~~le 132 (323)
T 1sxj_B 126 ALRRTME 132 (323)
T ss_dssp TTHHHHH
T ss_pred HHHHHHh
Confidence 8999998
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.23 E-value=9.3e-12 Score=134.80 Aligned_cols=86 Identities=31% Similarity=0.453 Sum_probs=59.1
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
++. |+|++..++.+...+.. ....++||+||||||||++|++||+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r-------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc-------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 444 89999999988887641 123689999999999999999999997
Q ss_pred ---------CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEe
Q 008723 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLD 397 (556)
+.+|+.+++. ..|.|.. +..+..+|..+. ...++|||||
T Consensus 227 ~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD 274 (468)
T 3pxg_A 227 NNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID 274 (468)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC
T ss_pred hCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe
Confidence 6788888887 3356654 445556665543 2367899999
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.23 E-value=1.8e-10 Score=118.93 Aligned_cols=105 Identities=31% Similarity=0.485 Sum_probs=72.3
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ++||+.+++.|...+.....+ . ....+++|+|||||||||+|++||+.+
T Consensus 23 ~l~~-~~g~~~~~~~l~~~i~~~~~~-------~-------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDE-FIGQENVKKKLSLALEAAKMR-------G-------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHHH-------T-------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHH-ccCcHHHHHHHHHHHHHHHhc-------C-------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4555 689999999888777521100 0 123689999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.++...++..+. . ...+..++... ....|+||||++.+... +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~-------~-~~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLV-------K-QGDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCC-------S-HHHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhc-------C-HHHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 9887665554332 1 12233333221 24579999999998765 7788888887
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=4.3e-11 Score=123.90 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=49.2
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh---
Q 008723 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (556)
Q Consensus 273 ~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l--- 349 (556)
+.++|+++.++.|...+..... . ..+.+++|+||+|||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~-----------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N-----------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T-----------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3489999999999888752210 0 123689999999999999999999988
Q ss_pred --------CCCeeeeccccc
Q 008723 350 --------NVPFVIADATTL 361 (556)
Q Consensus 350 --------~~~fv~i~~s~l 361 (556)
+.+++.++|...
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 73 KKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHHSSSSTTCEEEEEEHHHH
T ss_pred hhhhcCCCCceEEEEECccC
Confidence 888999998754
No 71
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=3.4e-11 Score=124.00 Aligned_cols=102 Identities=24% Similarity=0.329 Sum_probs=66.7
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh----
Q 008723 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---- 349 (556)
Q Consensus 274 ~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l---- 349 (556)
.++|++..++.|...+... .. .....+++|+||||||||++|+++++.+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~--------~~-------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~ 72 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPA--------LR-------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEARA 72 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGG--------TS-------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--------Hc-------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3799999998887766311 00 0124789999999999999999999988
Q ss_pred -----CCCeeeecccccccc---------------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 350 -----NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 350 -----~~~fv~i~~s~l~~s---------------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
+.+++.++|...... ...|......+..++.... ....+.||||||+|.+...
T Consensus 73 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 73 SSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp HHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHS
T ss_pred hccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhccc
Confidence 778899998753311 0112222222333332221 1224679999999988654
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.22 E-value=2.2e-11 Score=140.95 Aligned_cols=118 Identities=24% Similarity=0.329 Sum_probs=68.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|+. |+|+++.++.+...+.. ..+.+++|+||||||||++|+++|+.+
T Consensus 168 ~ld~-viGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 168 KLDP-VIGRDEEIRRVIQILLR-------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CSCC-CCSCHHHHHHHHHHHHC-------------------------------SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcc-cCCcHHHHHHHHHHHhc-------------------------------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3444 79999988888776641 023689999999999999999999987
Q ss_pred ----------CCCeeeeccccccc-cCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 350 ----------~~~fv~i~~s~l~~-sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
+.+++.+++..+.. ..|.|.. +..+..++..+.. ...+.||||||+|.+....... . ..
T Consensus 216 ~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~-g-----~~ 285 (854)
T 1qvr_A 216 VKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKAE-G-----AV 285 (854)
T ss_dssp HHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC-------------------
T ss_pred hcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCcc-c-----hH
Confidence 77899999987753 3466655 5667777765432 1256899999999987553211 0 12
Q ss_pred HHHHHHHHHHh
Q 008723 419 GVQQALLKMLE 429 (556)
Q Consensus 419 ~v~~~LL~~LE 429 (556)
.+.+.|..+|+
T Consensus 286 ~~~~~L~~~l~ 296 (854)
T 1qvr_A 286 DAGNMLKPALA 296 (854)
T ss_dssp ------HHHHH
T ss_pred HHHHHHHHHHh
Confidence 26677888876
No 73
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=2.4e-10 Score=125.09 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=79.8
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++ |+|++.+++.|...+...... ....+. ..+.. ......++||+||||||||++|+++|+++
T Consensus 37 ~~~d-liG~~~~~~~L~~~l~~~~~~-~~~~~~-~~g~~------------~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQ-VCGNKGSVMKLKNWLANWENS-KKNSFK-HAGKD------------GSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHTHHHH-HHTTTC-CCCTT------------STTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHH-hcCCHHHHHHHHHHHHHhHhh-chhhcc-ccCcc------------CCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3555 899999999999988632111 001111 00100 00124789999999999999999999999
Q ss_pred CCCeeeeccccccccCccccchHHHHHHHHHhc------ccc--------hhccCCeEEEEecccccchhhhcccccccC
Q 008723 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQA------EFN--------VEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (556)
Q Consensus 350 ~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a------~~~--------l~~a~~~VLfLDEID~l~~~r~~~~~~~~~ 415 (556)
+.+++.++++++... ..+...+... ... .....+.||||||+|.+.....
T Consensus 102 ~~~~i~in~s~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------- 165 (516)
T 1sxj_A 102 GYDILEQNASDVRSK--------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------- 165 (516)
T ss_dssp TCEEEEECTTSCCCH--------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------
T ss_pred CCCEEEEeCCCcchH--------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------
Confidence 999999999876532 1111111100 000 0124678999999999876421
Q ss_pred chHHHHHHHHHHHh
Q 008723 416 SGEGVQQALLKMLE 429 (556)
Q Consensus 416 s~~~v~~~LL~~LE 429 (556)
...+.|+++++
T Consensus 166 ---~~l~~L~~~l~ 176 (516)
T 1sxj_A 166 ---GGVGQLAQFCR 176 (516)
T ss_dssp ---THHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 14677888887
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=1.5e-10 Score=119.68 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=72.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCC--cEEEeCCCCChhHHHHHHHHHHh---
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKS--NVLLMGPTGSGKTLLAKTLARHV--- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~--~vLL~GPpGTGKTtlAraLA~~l--- 349 (556)
++|+++.++.|...+..... . ..+. +++|+||+|||||++++++++.+
T Consensus 19 l~gr~~~~~~l~~~l~~~~~----~-----------------------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLR----N-----------------------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHH----S-----------------------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHHHHc----C-----------------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999888753210 0 0123 79999999999999999999998
Q ss_pred -CCCeeeecccccccc-----------C----ccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 350 -NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 350 -~~~fv~i~~s~l~~s-----------g----yvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
+..++.++|...... + ..+.........+..... ....+.||||||++.+...
T Consensus 72 ~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~-------- 140 (389)
T 1fnn_A 72 TTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR---ERDLYMFLVLDDAFNLAPD-------- 140 (389)
T ss_dssp CCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HTTCCEEEEEETGGGSCHH--------
T ss_pred cCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh---hcCCeEEEEEECccccchH--------
Confidence 567888887653310 0 011111122211111110 1134679999999998544
Q ss_pred cCchHHHHHHHHHHHh
Q 008723 414 DVSGEGVQQALLKMLE 429 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LE 429 (556)
++..|+.+++
T Consensus 141 ------~~~~L~~~~~ 150 (389)
T 1fnn_A 141 ------ILSTFIRLGQ 150 (389)
T ss_dssp ------HHHHHHHHTT
T ss_pred ------HHHHHHHHHH
Confidence 8888988876
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=1.9e-11 Score=139.48 Aligned_cols=86 Identities=31% Similarity=0.444 Sum_probs=60.6
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-
Q 008723 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l- 349 (556)
++. |+|++++++.|...+.. ..+.++||+||||||||++|++||+.+
T Consensus 179 ld~-iiG~~~~i~~l~~~l~~-------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 179 LDP-VIGRSKEIQRVIEVLSR-------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC-------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCC-ccCchHHHHHHHHHHhC-------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 444 89999999998887741 123789999999999999999999997
Q ss_pred ---------CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEe
Q 008723 350 ---------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (556)
Q Consensus 350 ---------~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLD 397 (556)
+.+++.+++ ...|.|+. +..++.+|..+.. ..++|||||
T Consensus 227 ~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~~----~~~~iLfiD 274 (758)
T 3pxi_A 227 NNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIRQ----AGNIILFID 274 (758)
T ss_dssp SSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC
T ss_pred cCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHHh----cCCEEEEEc
Confidence 778888887 34466765 5566777765542 367899999
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.2e-10 Score=120.09 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=71.2
Q ss_pred HHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 270 ~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.|++ ++||+.+++.|...+... ...|++|+||+|||||++|+++|+.+
T Consensus 23 ~~~~-~~g~~~~~~~L~~~i~~g-------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 23 TLDE-VYGQNEVITTVRKFVDEG-------------------------------KLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHTT-------------------------------CCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHH-hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3455 799999999888877511 11469999999999999999999987
Q ss_pred CC-----CeeeeccccccccCccccchHHHHHHHHHhcc--cchhccCCeEEEEecccccchhhhcccccccCchHHHHH
Q 008723 350 NV-----PFVIADATTLTQAGYVGEDVESILYKLLAQAE--FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (556)
Q Consensus 350 ~~-----~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~--~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~ 422 (556)
.. .++.+++++.. + ...+++.+.... ...-.....|++|||+|.+... .++
T Consensus 71 ~~~~~~~~~~~~~~~~~~-----~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 128 (340)
T 1sxj_C 71 YGKNYSNMVLELNASDDR-----G---IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQN 128 (340)
T ss_dssp HTTSHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHH
T ss_pred cCCCccceEEEEcCcccc-----c---HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHH
Confidence 43 24555554321 1 122333222111 1111124689999999999776 789
Q ss_pred HHHHHHh
Q 008723 423 ALLKMLE 429 (556)
Q Consensus 423 ~LL~~LE 429 (556)
.|++.||
T Consensus 129 ~L~~~le 135 (340)
T 1sxj_C 129 ALRRVIE 135 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999998
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=2.2e-10 Score=117.78 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=36.3
Q ss_pred HhhhccChHHHHHHHHHHH-HHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 271 LDKFVIGQEKAKKVLSVAV-YNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 271 Ld~~VvGqe~ak~~L~~al-~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+++ ++||+++++.|..++ .. ....+++|+||+|+||||+++++|+.+
T Consensus 13 ~~~-~vg~~~~~~~l~~~~~~~-------------------------------~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 13 LNA-LSHNEELTNFLKSLSDQP-------------------------------RDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGG-CCSCHHHHHHHHTTTTCT-------------------------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHH-hcCCHHHHHHHHHHHhhC-------------------------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455 799999988776655 20 012459999999999999999999965
No 78
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.16 E-value=5.1e-11 Score=121.79 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=56.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
.+++|+||||||||++|+++++.+ +.+++.+++.++... +.+....... ..|... ...+.+||||||+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~~-----~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHLKKGTI-NEFRNM-----YKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHHHHTCH-HHHHHH-----HHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHHcCcH-HHHHHH-----hcCCCEEEEcCcccc
Confidence 689999999999999999999998 889999998776421 1111100000 111110 124679999999998
Q ss_pred chhhhcccccccCchHHHHHHHHHHHh
Q 008723 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 403 ~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
..+.. .++.|+.+++
T Consensus 111 ~~~~~------------~~~~l~~~l~ 125 (324)
T 1l8q_A 111 SGKER------------TQIEFFHIFN 125 (324)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCChH------------HHHHHHHHHH
Confidence 75311 5667777765
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.16 E-value=2.7e-11 Score=138.05 Aligned_cols=100 Identities=31% Similarity=0.457 Sum_probs=73.1
Q ss_pred HHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 269 ~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..++. |+|++..++.+...+.. ..+.++||+||||||||++|++||+.
T Consensus 183 ~~~d~-~iGr~~~i~~l~~~l~~-------------------------------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 183 GGIDP-LIGREKELERAIQVLCR-------------------------------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp TCSCC-CCSCHHHHHHHHHHHTS-------------------------------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCC-ccCCHHHHHHHHHHHhc-------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34555 89999999888776631 02478999999999999999999988
Q ss_pred h----------CCCeeeeccccccc-cCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 349 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 349 l----------~~~fv~i~~s~l~~-sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
+ +..++.+++..+.. ..|.|.. +..+..++.... ...++||||||+|.+...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~ 293 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGA 293 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTS
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhc
Confidence 7 55677777776653 3466665 667777776654 235789999999998654
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.15 E-value=6.9e-10 Score=114.63 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=58.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe------------------------eeeccccccccCccccchHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF------------------------VIADATTLTQAGYVGEDVESILYKLLAQ 381 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f------------------------v~i~~s~l~~sgyvG~~~e~~l~~lf~~ 381 (556)
..+||+||+|+|||++|+++|+.+.... +.++..+- .... . ...++++++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~--~-i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTL--G-VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSB--C-HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCC--C-HHHHHHHHHH
Confidence 4599999999999999999999986432 12211100 0011 1 3446666665
Q ss_pred cccchhccCCeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 382 AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 382 a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..........|++|||+|.+... .++.|++.||
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lE 133 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLE 133 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHT
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhc
Confidence 543322346789999999999876 8899999998
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=2.4e-10 Score=127.42 Aligned_cols=44 Identities=41% Similarity=0.679 Sum_probs=38.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
++||+.+++.|..++. ...+++|+|||||||||+|++||+.+..
T Consensus 43 i~G~~~~l~~l~~~i~---------------------------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAAN---------------------------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSCHHHHHHHHHHHH---------------------------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EECchhhHhhcccccc---------------------------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 8999999998888774 2368999999999999999999998853
No 82
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.04 E-value=5.2e-10 Score=107.37 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=54.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~ 401 (556)
..+++|+||||||||++|+++++.+. .+++.+++.++... + .. .+.. ...+.+|||||++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~------~~~~~vliiDe~~~ 115 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TA----LLEG------LEQFDLICIDDVDA 115 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GG----GGTT------GGGSSEEEEETGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HH----HHHh------ccCCCEEEEecccc
Confidence 37899999999999999999998874 67778888766532 1 00 1110 12567999999998
Q ss_pred cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 402 l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+..... .++.|+.+|+
T Consensus 116 ~~~~~~------------~~~~l~~~l~ 131 (242)
T 3bos_A 116 VAGHPL------------WEEAIFDLYN 131 (242)
T ss_dssp GTTCHH------------HHHHHHHHHH
T ss_pred ccCCHH------------HHHHHHHHHH
Confidence 866511 3667777766
No 83
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=9e-10 Score=113.13 Aligned_cols=115 Identities=18% Similarity=0.342 Sum_probs=73.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh-----
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----- 349 (556)
++|+++.++.|...+.... . ......++|+||+|||||++++.+++.+
T Consensus 22 ~~gr~~e~~~l~~~l~~~~--------~-------------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLY--------R-------------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGG--------G-------------------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHH--------c-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 7999999988877663110 0 0124689999999999999999999988
Q ss_pred -CCCeeeecccccccc---------------CccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccc
Q 008723 350 -NVPFVIADATTLTQA---------------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (556)
Q Consensus 350 -~~~fv~i~~s~l~~s---------------gyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~ 413 (556)
+.+++.++|...... ...+.+....+..++.... ....+.||||||++.+..... .
T Consensus 75 ~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~-----~ 146 (386)
T 2qby_A 75 GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN-----D 146 (386)
T ss_dssp SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC-----S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc-----C
Confidence 788888887643210 0112222233333332221 112478999999998864310 0
Q ss_pred cCchHHHHHHHHHHHh
Q 008723 414 DVSGEGVQQALLKMLE 429 (556)
Q Consensus 414 ~~s~~~v~~~LL~~LE 429 (556)
.++..|+..++
T Consensus 147 -----~~l~~l~~~~~ 157 (386)
T 2qby_A 147 -----DILYKLSRINS 157 (386)
T ss_dssp -----THHHHHHHHHH
T ss_pred -----HHHHHHhhchh
Confidence 16777777776
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=8.3e-10 Score=118.63 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=56.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-----CCCeeeeccccccccCccccchHHHHHHHHHhcccchhcc-CCeEEEEecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYIDEV 399 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a-~~~VLfLDEI 399 (556)
.+++|+||||||||++|++|++.+ +.+++.+++.++... +...-..... ..|.. ... .+.||||||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~-~~~~~-----~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKL-NEFRE-----KYRKKVDILLIDDV 203 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH-HHHHHHTTCH-HHHHH-----HHTTTCSEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHcccH-HHHHH-----HhcCCCCEEEEeCc
Confidence 689999999999999999999988 778888888765421 1100000000 01111 012 5679999999
Q ss_pred cccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 400 DKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
+.+.... ..++.|+..|+
T Consensus 204 ~~l~~~~------------~~q~~l~~~l~ 221 (440)
T 2z4s_A 204 QFLIGKT------------GVQTELFHTFN 221 (440)
T ss_dssp GGGSSCH------------HHHHHHHHHHH
T ss_pred ccccCCh------------HHHHHHHHHHH
Confidence 9887631 16777877776
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.00 E-value=2.9e-10 Score=122.78 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=92.6
Q ss_pred hHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHH
Q 008723 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 264 p~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAr 343 (556)
...+...+.. |+||+.+|+.|..++.. |..+ .....||||.|+||| ||++|+
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~G--------------G~~k------------~rgdihVLL~G~PGt-KS~Lar 256 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFS--------------CVGK------------NSERLHVLLAGYPVV-CSEILH 256 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTT--------------CCSS------------GGGCCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcC--------------Cccc------------cCCceeEEEECCCCh-HHHHHH
Confidence 4568888889 99999999988877741 0000 123469999999999 999999
Q ss_pred HH-HHHhCCCeeee-ccc---cccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchhhhcccccccCchH
Q 008723 344 TL-ARHVNVPFVIA-DAT---TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (556)
Q Consensus 344 aL-A~~l~~~fv~i-~~s---~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~r~~~~~~~~~s~~ 418 (556)
++ ++.+....+.. .++ .+... +.+. .. +....+.+..++++|+|||||+++.++
T Consensus 257 ~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~------tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~------------- 315 (506)
T 3f8t_A 257 HVLDHLAPRGVYVDLRRTELTDLTAV-LKED------RG-WALRAGAAVLADGGILAVDHLEGAPEP------------- 315 (506)
T ss_dssp HHHHHTCSSEEEEEGGGCCHHHHSEE-EEES------SS-EEEEECHHHHTTTSEEEEECCTTCCHH-------------
T ss_pred HHHHHhCCCeEEecCCCCCccCceEE-EEcC------CC-cccCCCeeEEcCCCeeehHhhhhCCHH-------------
Confidence 99 87764322211 111 11111 1000 11 222234455567899999999999888
Q ss_pred HHHHHHHHHHhccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 419 ~v~~~LL~~LEg~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
+|.+|++.||.+.+.+. | + .-..++.+|+|.|..
T Consensus 316 -~qsaLlEaMEe~~VtI~--G---------~-~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 316 -HRWALMEAMDKGTVTVD--G---------I-ALNARCAVLAAINPG 349 (506)
T ss_dssp -HHHHHHHHHHHSEEEET--T---------E-EEECCCEEEEEECCC
T ss_pred -HHHHHHHHHhCCcEEEC--C---------E-EcCCCeEEEEEeCcc
Confidence 99999999997777764 2 1 233457788888864
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.70 E-value=4.5e-08 Score=101.96 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=43.0
Q ss_pred ccChHHHHHHHHHHH-HHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEE--eCCCCChhHHHHHHHHHHh--
Q 008723 275 VIGQEKAKKVLSVAV-YNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLL--MGPTGSGKTLLAKTLARHV-- 349 (556)
Q Consensus 275 VvGqe~ak~~L~~al-~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL--~GPpGTGKTtlAraLA~~l-- 349 (556)
++|.++.++.|...+ .... .. .......++| +||+|+|||++++.+++.+
T Consensus 24 l~gR~~el~~l~~~l~~~~~-----~~--------------------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLL-----SG--------------------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHH-----TS--------------------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhHHHh-----cC--------------------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 799999888888877 4210 00 0012357889 9999999999999999876
Q ss_pred -------CCCeeeeccc
Q 008723 350 -------NVPFVIADAT 359 (556)
Q Consensus 350 -------~~~fv~i~~s 359 (556)
+..++.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 79 AAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp HHHHTTCCEEEEEEEGG
T ss_pred HHhccCCceeEEEEECC
Confidence 3456777764
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=1.2e-08 Score=95.15 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLT 362 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s~l~ 362 (556)
+..++|+||+|||||+++++++..+ +..++.+++.++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4789999999999999999999887 5555666655543
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.65 E-value=7.2e-08 Score=122.26 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCcEEEeCCCCChhHHHH-HHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhc-c------c---ch-hccCCe
Q 008723 325 KSNVLLMGPTGSGKTLLA-KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA-E------F---NV-EAAQQG 392 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlA-raLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a-~------~---~l-~~a~~~ 392 (556)
..++||+||||||||++| +++++..+..++.++++..+.+ ..+...+... . . .. ...+..
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 479999999999999999 5555544667778888765532 2233333321 1 0 00 123567
Q ss_pred EEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 393 VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
||||||||....++-+ . ..+++.|.++|| |..... . ... .+...++.+|+|+|..
T Consensus 1339 VlFiDEinmp~~d~yg---~-----q~~lelLRq~le~gg~yd~-~-------~~~--~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYG---S-----QNVVLFLRQLMEKQGFWKT-P-------ENK--WVTIERIHIVGACNPP 1394 (2695)
T ss_dssp EEEEETTTCSCCCSSS---C-----CHHHHHHHHHHHTSSEECT-T-------TCC--EEEEESEEEEEEECCT
T ss_pred EEEecccccccccccC---c-----hhHHHHHHHHHhcCCEEEc-C-------CCc--EEEecCEEEEEecCCC
Confidence 9999999964333111 0 127888899998 332211 1 111 2344788999988875
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=1.3e-06 Score=88.45 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
++|.++..+.|..++.. ...++|+||+|+|||++++.+++..+ .+
T Consensus 14 ~~gR~~el~~L~~~l~~---------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~ 58 (350)
T 2qen_A 14 IFDREEESRKLEESLEN---------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--GI 58 (350)
T ss_dssp SCSCHHHHHHHHHHHHH---------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--EE
T ss_pred cCChHHHHHHHHHHHhc---------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--cE
Confidence 68999988888877641 15799999999999999999999875 55
Q ss_pred eeccc
Q 008723 355 IADAT 359 (556)
Q Consensus 355 ~i~~s 359 (556)
.+++.
T Consensus 59 ~~~~~ 63 (350)
T 2qen_A 59 LIDCR 63 (350)
T ss_dssp EEEHH
T ss_pred EEEee
Confidence 55554
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.44 E-value=4.7e-07 Score=110.65 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=86.3
Q ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHhh-------hccC-C-CCChhhhhhhcccc--cccccCCcEEEeCC
Q 008723 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHAN-------LKKG-S-GAEPKTAAAVDNDD--NVELEKSNVLLMGP 333 (556)
Q Consensus 265 ~el~~~Ld~~VvGqe~ak~~L~~al~~~~~rl~~~~-------~~~~-~-g~s~~~~~~~~~~~--~v~~~~~~vLL~GP 333 (556)
.+....+++ |-|.+++|..+.+++.+....-+... ..+. . ..+..+ .-+|.+- .-.+..+.+||+||
T Consensus 1013 ~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~-~glD~~lg~GG~p~g~~~l~~G~ 1090 (1706)
T 3cmw_A 1013 SASGSSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGS-LSLDIALGAGGLPMGRIVEIYGP 1090 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSC-HHHHHHTSSSSEETTSEEEEECS
T ss_pred ccCCceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCc-hhHHHHhccCCCCCCCEEEEEcC
Confidence 344455666 79999999999888876543211110 0000 0 000000 0011111 11223456999999
Q ss_pred CCChhHHHHHHHHHHh---CCCeeeecccccc----c-------cCcccc---chHHHHHHHHHhcccchhccCCeEEEE
Q 008723 334 TGSGKTLLAKTLARHV---NVPFVIADATTLT----Q-------AGYVGE---DVESILYKLLAQAEFNVEAAQQGMVYI 396 (556)
Q Consensus 334 pGTGKTtlAraLA~~l---~~~fv~i~~s~l~----~-------sgyvG~---~~e~~l~~lf~~a~~~l~~a~~~VLfL 396 (556)
||||||++|++++.+. +.+-+.|+..+.. . ..|+++ ..|+.++.++..++ ...+++||+
T Consensus 1091 ~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar----~~~~~~i~~ 1166 (1706)
T 3cmw_A 1091 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR----SGAVDVIVV 1166 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH----HTCCSEEEE
T ss_pred CCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH----hcCCeEEEe
Confidence 9999999999999766 3444444444322 0 235555 12777877776554 347899999
Q ss_pred ecccccchhhhcc-ccccc--CchHHHHHHHHHHHhc
Q 008723 397 DEVDKITKKAESL-NISRD--VSGEGVQQALLKMLEG 430 (556)
Q Consensus 397 DEID~l~~~r~~~-~~~~~--~s~~~v~~~LL~~LEg 430 (556)
||++.|.+.+... +.+.. ....++++++|..|++
T Consensus 1167 d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1167 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp SCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999999885421 22211 2224567888888875
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.32 E-value=1.1e-06 Score=80.65 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=51.9
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
....++|+||+|+|||+++++++..+ +...+.++..++... .+ ...+.+|+|||++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~ 93 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVE 93 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcc
Confidence 34789999999999999999999988 556677776655421 00 1145699999999
Q ss_pred ccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 KITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
.+... .++.|+.+|+
T Consensus 94 ~~~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 94 KLGNE--------------EQALLFSIFN 108 (149)
T ss_dssp CCCSH--------------HHHHHHHHHH
T ss_pred ccChH--------------HHHHHHHHHH
Confidence 87655 3556666665
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.31 E-value=2.8e-07 Score=87.11 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=31.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~ 362 (556)
.+++|+||+|||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999988 5677777776544
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.30 E-value=7e-06 Score=83.02 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=29.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
..++|+||+|+|||++++.+++.+...++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 47999999999999999999998876677777654
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.09 E-value=2.7e-06 Score=82.77 Aligned_cols=79 Identities=11% Similarity=0.266 Sum_probs=49.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.++||+||||||||++|.+||+.+....+.+.-+. +.+. +.. .....+|+|||+|.-.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f~-----------l~~------l~~~kIiiLDEad~~~~- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHFW-----------LEP------LTDTKVAMLDDATTTCW- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCGG-----------GGG------GTTCSSEEEEEECHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chhh-----------hcc------cCCCCEEEEECCCchhH-
Confidence 57999999999999999999999865433211100 0000 000 01234999999994321
Q ss_pred hhcccccccCchHHHHHHHHHHHhccccccCC
Q 008723 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPE 437 (556)
Q Consensus 406 r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe 437 (556)
+.+...|..+|||..+.++.
T Consensus 118 ------------~~~d~~lrn~ldG~~~~iD~ 137 (212)
T 1tue_A 118 ------------TYFDTYMRNALDGNPISIDR 137 (212)
T ss_dssp ------------HHHHHHCHHHHHTCCEEEC-
T ss_pred ------------HHHHHHHHHHhCCCcccHHH
Confidence 12566788899987665543
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.07 E-value=1.5e-05 Score=101.46 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=53.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.++++.||+|||||++++++|+.+|.+++.++|++-++ ...+..+|..+. ..+.+++|||++++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~~-----~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGIT-----QIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHHH-----hcCCEeeehhhhhcChH
Confidence 67999999999999999999999999999999997653 233344444332 13679999999998876
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.07 E-value=1.1e-05 Score=103.51 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCcEEEeCCCCChhHHHHHH-HHHHhCCCeeeeccccccccCccccchHHHHHHHHHh-cc-------cc-hhc---cCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKT-LARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQ-AE-------FN-VEA---AQQ 391 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAra-LA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~-a~-------~~-l~~---a~~ 391 (556)
..+|||+||||||||.+++. +++..+.+++.++++.-+.+ ..+...++. .. +. +.. .+.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 47899999999999977654 54444667788888765532 233333331 11 11 111 234
Q ss_pred eEEEEecccccchhhhcccccccCchHHHHHHHHHHHh-ccccccCCCCcccCCCCCceEEecCceEEEecCCCc
Q 008723 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (556)
Q Consensus 392 ~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE-g~~v~ipe~g~r~~~~~~~ivid~rnii~I~t~n~~ 465 (556)
.|||||||+.-..+.-+ . ..+.+.|.++|| +..+. ++ +...+...++.||+|.|..
T Consensus 1376 ~VlFiDDiNmp~~D~yG---t-----Q~~ielLrqlld~~g~yd-~~---------~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYG---T-----QRVITFIRQMVEKGGFWR-TS---------DHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp EEEEETTTTCCCCCTTS---C-----CHHHHHHHHHHHHSEEEE-TT---------TTEEEEESSEEEEEEECCT
T ss_pred EEEEecccCCCCccccc---c-----ccHHHHHHHHHHcCCeEE-CC---------CCeEEEecCeEEEEEcCCC
Confidence 69999999964433110 1 127888999999 33322 11 1223456888899987753
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.05 E-value=9e-06 Score=81.91 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhc-cCCeEEEEecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA-AQQGMVYIDEVDKIT 403 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~-a~~~VLfLDEID~l~ 403 (556)
..+|+|+||||||||++|++||+.+.. +..++.+. +.+ .+.. ....|+++||.. +.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~---~~f------------------~l~~~~~k~i~l~Ee~~-~~ 160 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENF------------------PFNDCVDKMVIWWEEGK-MT 160 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSC------------------TTGGGSSCSEEEECSCC-EE
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc---ccc------------------ccccccccEEEEecccc-ch
Confidence 357999999999999999999997643 33333221 101 1111 133455666655 54
Q ss_pred hhhhcccccccCchHHHHHHHHHHHhccccccCCC
Q 008723 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (556)
Q Consensus 404 ~~r~~~~~~~~~s~~~v~~~LL~~LEg~~v~ipe~ 438 (556)
.+ +++.|..+|+|..+.++..
T Consensus 161 ~d--------------~~~~lr~i~~G~~~~id~K 181 (267)
T 1u0j_A 161 AK--------------VVESAKAILGGSKVRVDQK 181 (267)
T ss_dssp TT--------------THHHHHHHHTTCCEEC---
T ss_pred hH--------------HHHHHHHHhCCCcEEEecC
Confidence 44 5677888999877766433
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.03 E-value=1.5e-06 Score=89.03 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC----CCeeeecccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLT 362 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~----~~fv~i~~s~l~ 362 (556)
..+++|+||||||||++|++||+.+. .+++.+++.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 37899999999999999999998664 566666666543
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.89 E-value=1.3e-05 Score=82.93 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC--eeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~--fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
...++|+||||||||++|..+|...+.+ |+.+...+.... +. .+.+..+..+++... . .+ +|||||++.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~-~~-~~le~~l~~i~~~l~----~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-YN-TDFNVFVDDIARAML----Q-HR-VIVIDSLKNV 194 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-CB-CCHHHHHHHHHHHHH----H-CS-EEEEECCTTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh-hh-cCHHHHHHHHHHHHh----h-CC-EEEEeccccc
Confidence 4567999999999999999999875544 555422322211 22 233444444443322 1 23 9999999998
Q ss_pred chhh
Q 008723 403 TKKA 406 (556)
Q Consensus 403 ~~~r 406 (556)
....
T Consensus 195 ~~~~ 198 (331)
T 2vhj_A 195 IGAA 198 (331)
T ss_dssp C---
T ss_pred cccc
Confidence 6543
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=0.0003 Score=66.09 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=23.1
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
.+.|.||+|+||||+++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58899999999999999999988643
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.54 E-value=0.00049 Score=88.68 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=52.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEecccccchh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.+..+.||+|||||+++|.||+.+|.+++.++|++-.+ ...+..+|..+. ..++..+||||+++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--------~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--------LQAMSRIFVGLC-----QCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--------HHHHHHHHhhHh-----hcCcEEEehhhhcCCHH
Confidence 56789999999999999999999999999999987653 223334443321 24678999999998876
No 102
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.53 E-value=6.1e-05 Score=74.33 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=53.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc------ccccCccccchHHHHHHHHHhcccchhcc-CCeEEEEe
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGEDVESILYKLLAQAEFNVEAA-QQGMVYID 397 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~------l~~sgyvG~~~e~~l~~lf~~a~~~l~~a-~~~VLfLD 397 (556)
+..|.|.||+|+||||+|+.|++.++.+++..+... ....++.-.+ +..+.++.......+... ....+|+|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d-~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTD-PAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC-HHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchh-hHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 467999999999999999999999997776443321 0112222222 344555555544333221 12346677
Q ss_pred cccccchhhhcccccccCch
Q 008723 398 EVDKITKKAESLNISRDVSG 417 (556)
Q Consensus 398 EID~l~~~r~~~~~~~~~s~ 417 (556)
.-+ +...+++.+++..+|.
T Consensus 88 g~~-v~~~ir~~~v~~~~s~ 106 (233)
T 3r20_A 88 GED-VSSEIRGDAVTGAVSA 106 (233)
T ss_dssp TEE-CTTGGGSHHHHHHHHH
T ss_pred Cee-hhhhhcchHHHHHHHH
Confidence 666 5555666666544444
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.43 E-value=0.00015 Score=90.12 Aligned_cols=81 Identities=23% Similarity=0.220 Sum_probs=50.3
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---Cccc-----------cchHHHHHHHHHhccc
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVG-----------EDVESILYKLLAQAEF 384 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG-----------~~~e~~l~~lf~~a~~ 384 (556)
..++.+++|+||||||||+||.+++.+. +...+.+++...... ...| ...+..+..++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~l--- 1500 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL--- 1500 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH---
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHH---
Confidence 4457899999999999999999998765 344445554432210 0111 1113333333322
Q ss_pred chhccCCeEEEEecccccchhh
Q 008723 385 NVEAAQQGMVYIDEVDKITKKA 406 (556)
Q Consensus 385 ~l~~a~~~VLfLDEID~l~~~r 406 (556)
+....+.+|||||++.+.+..
T Consensus 1501 -vr~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1501 -ARSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp -HHHTCCSEEEESCGGGCCCHH
T ss_pred -HhcCCCCEEEEcChhHhcccc
Confidence 223467899999999887743
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=9.3e-05 Score=69.97 Aligned_cols=36 Identities=42% Similarity=0.610 Sum_probs=30.7
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
.+...|+|.|++|+||||+++.||+.++.+|+..+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 345789999999999999999999999998876543
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.37 E-value=0.00011 Score=68.10 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
...|+|+|++|+||||+|+.||+.++.+|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 3679999999999999999999999998886554
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.34 E-value=0.00012 Score=67.23 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=29.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.|+||+||||+|+.|++.++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5699999999999999999999999888865543
No 107
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.22 E-value=0.0009 Score=65.96 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
....|.|.||+|+||||+++.||+.++..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34679999999999999999999999876653
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.0002 Score=65.43 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=29.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.+|+|.|++||||||+|+.||+.++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999887654
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00024 Score=64.40 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=28.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
.|+|.|++|+||||+|+.|++.++.+++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 58999999999999999999999988875553
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.18 E-value=0.0002 Score=65.97 Aligned_cols=32 Identities=38% Similarity=0.712 Sum_probs=28.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|+|.|+||+||||+|+.||+.++.+|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 36999999999999999999999998776543
No 111
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.15 E-value=0.00028 Score=72.26 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=51.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC---C-CeeeeccccccccCccccchHHHHHHHHHhcccchhccCCeEEEEeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN---V-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~---~-~fv~i~~s~l~~sgyvG~~~e~~l~~lf~~a~~~l~~a~~~VLfLDEID 400 (556)
...+||+||.|+||++.++.|++.+. . ++..+. +.+.. .++++++.+....-.....||+|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~---~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS--------IDPNT---DWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE--------CCTTC---CHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE--------ecCCC---CHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 36799999999999999999998762 1 211111 11111 122333332221112456799999999
Q ss_pred c-cchhhhcccccccCchHHHHHHHHHHHh
Q 008723 401 K-ITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 401 ~-l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
. +..+ .++.|++.||
T Consensus 87 ~kl~~~--------------~~~aLl~~le 102 (343)
T 1jr3_D 87 NGPNAA--------------INEQLLTLTG 102 (343)
T ss_dssp SCCCTT--------------HHHHHHHHHT
T ss_pred CCCChH--------------HHHHHHHHHh
Confidence 8 7766 8899999998
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.00026 Score=65.50 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=28.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 459999999999999999999999988875543
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.08 E-value=0.0014 Score=70.20 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+++|.|++|||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999877
No 114
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.08 E-value=0.00032 Score=64.79 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=28.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
...|+|+|+||+||||+++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999998776643
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00032 Score=64.00 Aligned_cols=31 Identities=35% Similarity=0.759 Sum_probs=27.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|+|++|+||||+++.||..++.+++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 5799999999999999999999998766543
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.01 E-value=0.00033 Score=65.40 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH-hCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH-VNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~-l~~~fv~i~ 357 (556)
...|+|+|++||||||+++.|++. ++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 467999999999999999999999 687666443
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.00 E-value=0.00036 Score=64.65 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=28.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 356899999999999999999999998877654
No 118
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.00045 Score=62.90 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=28.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 46999999999999999999999998877544
No 119
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.94 E-value=0.00052 Score=64.57 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=28.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..|+|.|+||+||||+|+.|++.++.+++.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 356999999999999999999999998877653
No 120
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.92 E-value=0.00044 Score=64.15 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 467999999999999999999999998776544
No 121
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.90 E-value=0.00071 Score=63.71 Aligned_cols=33 Identities=30% Similarity=0.651 Sum_probs=28.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
...|+|.|++|+||||+|+.|++.++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 357999999999999999999999987776544
No 122
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00046 Score=63.67 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5689999999999999999999998776644
No 123
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.0006 Score=61.87 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=27.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998877544
No 124
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00051 Score=61.76 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.| +.++.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 35899999999999999999 8888877654
No 125
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.87 E-value=0.00085 Score=63.28 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-++++||+|+||||++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999996665443
No 126
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.86 E-value=0.00043 Score=63.95 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|++|+||||+|+.|++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4699999999999999999999998776644
No 127
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00064 Score=67.21 Aligned_cols=33 Identities=39% Similarity=0.486 Sum_probs=29.1
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
.++|.||||+||||+|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 488999999999999999999999888766653
No 128
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.0031 Score=61.61 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=23.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
.-++++|++|+||||++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 568889999999999998888666 4444444
No 129
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.83 E-value=0.00063 Score=65.04 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=28.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
+..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999877654
No 130
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.80 E-value=0.00054 Score=63.14 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=23.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..|+|.|+||+||||+|+.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999887
No 131
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.80 E-value=0.001 Score=63.79 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=42.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh--------C-CCeeeeccccccccCcc----------ccch----HHHHHHHHHhc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV--------N-VPFVIADATTLTQAGYV----------GEDV----ESILYKLLAQA 382 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l--------~-~~fv~i~~s~l~~sgyv----------G~~~----e~~l~~lf~~a 382 (556)
..+|++|+||||||++|..++... + .+++..++.++.-. +. .... ...+...+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIP-HTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSC-CEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccc-ccccchhhhhccccCcccccHHHHHHHhh--
Confidence 468999999999999998865432 3 55554555444311 11 1000 011222110
Q ss_pred ccchhccCCeEEEEecccccchh
Q 008723 383 EFNVEAAQQGMVYIDEVDKITKK 405 (556)
Q Consensus 383 ~~~l~~a~~~VLfLDEID~l~~~ 405 (556)
.+...+.||+|||++.+.+.
T Consensus 83 ---~~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 83 ---KPENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ---SGGGTTCEEEETTGGGTSBC
T ss_pred ---ccccCceEEEEEChhhhccC
Confidence 12235789999999998554
No 132
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.78 E-value=0.00075 Score=64.12 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=26.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|.|+||+||||+|+.|++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998777655
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.00067 Score=63.10 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
+..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999998766644
No 134
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.76 E-value=0.00083 Score=63.71 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=26.9
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999998877655
No 135
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.74 E-value=0.00065 Score=65.03 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=27.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999998766543
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00074 Score=62.05 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
..|+|.|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56999999999999999999999998877
No 137
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.70 E-value=0.00086 Score=64.19 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=28.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5699999999999999999999999877755
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.00095 Score=61.14 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
...++|.|++|+||||+++.|+..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3568999999999999999999998866554
No 139
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.69 E-value=0.00076 Score=64.85 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=27.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|+||+||||+|+.||+.++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999998777654
No 140
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.69 E-value=0.00081 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=27.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|+|.|++|+||||+|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999998777654
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.67 E-value=0.00097 Score=64.54 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
...|+|.|+||+||||+|+.||+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999877654
No 142
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.00074 Score=66.18 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..|+|.|+||+||||+|+.|++.++.+++.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 357999999999999999999999987666543
No 143
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.61 E-value=0.0036 Score=69.36 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...++|.|+||||||+++++++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998766
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.61 E-value=0.00066 Score=61.93 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHH-HhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR-HVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~-~l~~~fv~ 355 (556)
..|+|.|+||+||||+|+.|++ .++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 3589999999999999999998 56554443
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.61 E-value=0.0008 Score=62.35 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=29.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
+..++|.||+|+||||+++.|+...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 356899999999999999999998766666666544
No 146
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.61 E-value=0.0053 Score=58.86 Aligned_cols=25 Identities=44% Similarity=0.546 Sum_probs=22.1
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHH
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA 346 (556)
..++..++|.||+|+||||+++.|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3456789999999999999999998
No 147
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.0026 Score=60.86 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.8
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.....++|.||+|+|||++++.++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34577999999999999999999984
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.0052 Score=57.79 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=28.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
++.-++|.||+|+||||+++.++...+...+.++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 346789999999999999999998445555555544
No 149
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0008 Score=66.84 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=30.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
...|+|+|++|+||||+++.||+.++.+|+..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 4789999999999999999999999988876543
No 150
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.60 E-value=0.0064 Score=59.29 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=27.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..++|.+|+|+|||.+|.+++..++.+.+.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4599999999999999999998887666655444
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.59 E-value=0.0011 Score=62.31 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=27.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999987766544
No 152
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.58 E-value=0.0014 Score=61.84 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
+..++|.||+|+||||+++.|++.++..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4679999999999999999999999765543
No 153
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.56 E-value=0.0013 Score=62.71 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.0
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877655
No 154
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.53 E-value=0.0028 Score=62.26 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~l 361 (556)
+..|+|.|+||+||||+|+.|++.++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3579999999999999999999999766666666654
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.52 E-value=0.0014 Score=62.51 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..|.|+|++|+||||+++.|++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 569999999999999999999999876653
No 156
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.51 E-value=0.0029 Score=63.76 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=29.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
+..|+|.||||+||||+|+.|++.++..++.+++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 356899999999999999999998854556666543
No 157
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.49 E-value=0.004 Score=65.08 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=46.8
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc------C------c--cccchHHHHHHHHHhcccc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA------G------Y--VGEDVESILYKLLAQAEFN 385 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s------g------y--vG~~~e~~l~~lf~~a~~~ 385 (556)
.+...++|+||||+||||+|..++..+ +...+.++....... + + ...+.+..+.. + ...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~-~---~~l 134 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI-V---DEL 134 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH-H---HHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH-H---HHH
Confidence 345678999999999999999999775 455555665432210 0 0 01122222211 1 111
Q ss_pred hhccCCeEEEEecccccch
Q 008723 386 VEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 386 l~~a~~~VLfLDEID~l~~ 404 (556)
+......+++||.+..+.+
T Consensus 135 ~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHTSCCSEEEEECTTTCCC
T ss_pred hhhcCCCeEEehHhhhhcC
Confidence 2223567999999998875
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.46 E-value=0.002 Score=59.42 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l 361 (556)
+..|+|+|++|+||||+++.|+..+ +.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3568899999999999999999988 888887775543
No 159
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.0043 Score=61.23 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=29.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH---hCCCeeeeccccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH---VNVPFVIADATTL 361 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~---l~~~fv~i~~s~l 361 (556)
..|+|.|+||+||||+|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46899999999999999999998 6777774554433
No 160
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.43 E-value=0.0022 Score=59.14 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=27.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh---CCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~ 357 (556)
.|+|.|++|+||||+|+.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999999988 88877654
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.41 E-value=0.0018 Score=60.18 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.9
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
.|+|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999876653
No 162
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0018 Score=62.45 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=25.2
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
.|+|.||||+||+|.|+.||+.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4889999999999999999999987654
No 163
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0021 Score=60.16 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=27.9
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|.|.|++|+||||+|+.||+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998887544
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.37 E-value=0.018 Score=61.67 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=27.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
++..++|.|++|+||||++..||..+ +.....+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35678999999999999999999777 445444443
No 165
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.34 E-value=0.002 Score=60.22 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh-CCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l-~~~fv~i~ 357 (556)
+..|+|.|++|+||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3579999999999999999999998 46666544
No 166
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.32 E-value=0.0018 Score=60.83 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.4
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
.|.|+|++|+||||+++.|++ ++.+++..+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 589999999999999999999 8877665443
No 167
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0018 Score=62.97 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
++.|+|.||||+||+|.|+.|++.++.+.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 356788999999999999999999986554
No 168
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.31 E-value=0.011 Score=62.57 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
.+.-|+|+|+||+||||+|+.|++.++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 34678899999999999999999998765544
No 169
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.30 E-value=0.0015 Score=61.39 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=27.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
+..|+|.|++|+||||+|+.|++.++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46799999999999999999999886655444
No 170
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.29 E-value=0.002 Score=61.97 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=26.1
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.|+|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766544
No 171
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.26 E-value=0.002 Score=59.95 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
+..|.|.|++|+||||+|+.|++. +.+++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 356899999999999999999998 77766443
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.26 E-value=0.0025 Score=60.06 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=28.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l 361 (556)
++..|.|.||+|+||||++++|+..+ |...+.++..++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34678999999999999999999988 444234444433
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.25 E-value=0.0021 Score=60.55 Aligned_cols=30 Identities=47% Similarity=0.586 Sum_probs=25.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
.|.|.|++|+||||+++.|++ +|.+++..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 588999999999999999998 787776443
No 174
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.24 E-value=0.0014 Score=60.20 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.4
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999885
No 175
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.035 Score=59.55 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
+..|+|.|++|+||||++..||..+ +.....+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5678999999999999999999877 4455444443
No 176
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.19 E-value=0.0034 Score=58.10 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.3
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
|+|.|++|+||||+++.|++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999998 8877644
No 177
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.17 E-value=0.0023 Score=66.05 Aligned_cols=34 Identities=38% Similarity=0.600 Sum_probs=29.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|+||+|+|||++|+.||+.++..++.+|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999888877654
No 178
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.0028 Score=60.29 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|.|+|.+||||||+|+.|++.+|.+++..|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 458899999999999999999998877765443
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.0039 Score=60.66 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+..++|.||+|+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999986544
No 180
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.10 E-value=0.002 Score=60.57 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
+..|+|+|++|+||||+|+.|++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4679999999999999999999987544443
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.04 E-value=0.0063 Score=63.19 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=45.6
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccC---ccc-----------cchHHHHHHHHHhcccc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVG-----------EDVESILYKLLAQAEFN 385 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sg---yvG-----------~~~e~~l~~lf~~a~~~ 385 (556)
.+...++|+||||+|||++|..++..+ +...+.++........ -.| .+.+..+ .+. ...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~---~~l 134 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIA---DML 134 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH---HHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHH---HHH
Confidence 355779999999999999999998654 4455555544321100 011 1112222 111 111
Q ss_pred hhccCCeEEEEecccccch
Q 008723 386 VEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 386 l~~a~~~VLfLDEID~l~~ 404 (556)
+....+.+|+||++..+..
T Consensus 135 ~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HTTTCCSEEEEECGGGCCC
T ss_pred HhcCCCCEEEEcChHhhcc
Confidence 1223577999999998874
No 182
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.03 E-value=0.0025 Score=66.60 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=27.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
.+|+|.|++|+||||++++||+.++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 4699999999999999999999999888553
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.03 E-value=0.0089 Score=56.50 Aligned_cols=26 Identities=46% Similarity=0.510 Sum_probs=22.9
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..-+.|.||+|+||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999854
No 184
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.02 E-value=0.0038 Score=59.18 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=28.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|.|.|++|+||||+++.|++.++.+++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 56999999999999999999999998776544
No 185
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.96 E-value=0.0027 Score=65.95 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=29.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.||+|+|||+||..||+.++..++..|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999998877766655
No 186
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.96 E-value=0.0039 Score=61.05 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=25.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
..|.|.|++|+||||+|+.|++.++.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 4689999999999999999999998764
No 187
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.94 E-value=0.004 Score=58.19 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
..|+|.|++|+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998763
No 188
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.91 E-value=0.0039 Score=59.29 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~ 357 (556)
..|.|.|++|+||||+++.|++ ++.+++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4689999999999999999998 887766543
No 189
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0049 Score=59.67 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=28.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
+..|.|.|++|+||||+++.|++.++.+++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 46799999999999999999999999776643
No 190
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.0055 Score=58.45 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=28.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..|.|.|++|||||++++.||+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 569999999999999999999999999985
No 191
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.71 E-value=0.011 Score=60.78 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=23.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..++|.||+|+||||+.++|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 47899999999999999999998873
No 192
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.65 E-value=0.017 Score=72.05 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=50.7
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCc---ccc-----------chHHHHHHHHHhcc
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGE-----------DVESILYKLLAQAE 383 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgy---vG~-----------~~e~~l~~lf~~a~ 383 (556)
.......++|+||||||||++|.+++.+. |.+.+.+++.+..+.-+ .|. ..+... .+....
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~-~i~~~l- 1154 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL-EICDAL- 1154 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHH-HHHHHH-
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHH-HHHHHH-
Confidence 34567899999999999999999988654 56666666665432200 111 001111 111111
Q ss_pred cchhccCCeEEEEecccccchhhh
Q 008723 384 FNVEAAQQGMVYIDEVDKITKKAE 407 (556)
Q Consensus 384 ~~l~~a~~~VLfLDEID~l~~~r~ 407 (556)
.....+.+|+|||+..+.+..+
T Consensus 1155 --~~~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1155 --ARSGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp --HHHTCCSEEEESCGGGCCCHHH
T ss_pred --HHhCCCCEEEECCccccccccc
Confidence 1123578999999999966543
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.65 E-value=0.0064 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..++|.||+|+||||+++.|++.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999884
No 194
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.60 E-value=0.025 Score=62.89 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988776554
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.54 E-value=0.0068 Score=56.06 Aligned_cols=35 Identities=34% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s 359 (556)
+..|+|.|++|+||||+++.|++.++ .+++.++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 46789999999999999999998873 334444443
No 196
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.51 E-value=0.005 Score=61.41 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-CCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-~~~fv~i~ 357 (556)
..|+|.|+||+||||+|+.|++.+ +..++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 358999999999999999999874 65555444
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.49 E-value=0.0048 Score=58.11 Aligned_cols=30 Identities=40% Similarity=0.505 Sum_probs=24.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh-CCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l-~~~fv~ 355 (556)
..|.|.|++|+||||+|+.|++.+ +..++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 568899999999999999999987 544443
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.47 E-value=0.015 Score=60.29 Aligned_cols=30 Identities=40% Similarity=0.349 Sum_probs=25.3
Q ss_pred cccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 320 ~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-..+...+.|+||+|+||||+++.++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334456778999999999999999999876
No 199
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.42 E-value=0.0076 Score=63.41 Aligned_cols=34 Identities=32% Similarity=0.274 Sum_probs=28.3
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..++..++|+||+|+||||++++|+..++..++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3445789999999999999999999988765543
No 200
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0085 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..++|.||+|+||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36789999999999999999998764
No 201
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.42 E-value=0.0069 Score=59.02 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
.+.++.-..++..+.|.||+|+||||+++.|+..++..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 33444444445678899999999999999999988754
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.41 E-value=0.016 Score=60.31 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=22.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 579999999999999999999877
No 203
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.41 E-value=0.0073 Score=62.19 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=27.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..|+|.||+|+|||++|..||+.++..++..|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4588999999999999999999987666554443
No 204
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.39 E-value=0.0074 Score=62.01 Aligned_cols=33 Identities=42% Similarity=0.655 Sum_probs=28.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..++|.||+|+|||++|..||+.++..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 458899999999999999999999876666554
No 205
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.39 E-value=0.024 Score=59.00 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=29.5
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
..+...++|+|+||+|||++|..++..+ +.+.+.++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456779999999999999999998665 4566666664
No 206
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.37 E-value=0.016 Score=59.21 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.0
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
......++|+||||+|||++|..+|..+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3456789999999999999999999765
No 207
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.37 E-value=0.0078 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999877
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.29 E-value=0.017 Score=59.60 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=44.5
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh-----CCCeeeecccccccc------Cc--------cccchHHHHHHHHHhcccchh
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQA------GY--------VGEDVESILYKLLAQAEFNVE 387 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l-----~~~fv~i~~s~l~~s------gy--------vG~~~e~~l~~lf~~a~~~l~ 387 (556)
.++|+||||+|||+||-.++..+ +...+.++...-... ++ ...+.+.....+.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~-~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD-AIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH-TCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH-Hhh
Confidence 58999999999999987776443 445666666532211 10 01122222012222110 023
Q ss_pred ccCCeEEEEecccccch
Q 008723 388 AAQQGMVYIDEVDKITK 404 (556)
Q Consensus 388 ~a~~~VLfLDEID~l~~ 404 (556)
...+.+|+||-|..+.+
T Consensus 109 ~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TTCCEEEEEECSTTCBC
T ss_pred ccCceEEEEeccccccc
Confidence 34678999999999964
No 209
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.27 E-value=0.025 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
++..+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.26 E-value=0.011 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.0
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
.++|.||+|+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5789999999999999999986643
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.25 E-value=0.024 Score=53.67 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=23.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
+.|+|.||+|+|||||++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4699999999999999999988764333
No 212
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.25 E-value=0.01 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999863
No 213
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.0089 Score=62.07 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=27.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|+|.||+|+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999865555443
No 214
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.24 E-value=0.0094 Score=56.47 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..+.|.||+|+||||+++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46788999999999999999999874
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.24 E-value=0.0091 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
++.-++|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999874
No 216
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.21 E-value=0.094 Score=50.22 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccc---------cccc----------Cccccc-----hHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT---------LTQA----------GYVGED-----VESILYK 377 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~---------l~~s----------gyvG~~-----~e~~l~~ 377 (556)
...|++++.+|.||||+|-.+|-.. |.....+.... +... +|.-.. .......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4689999999999999999988554 55554442211 1111 111111 1223334
Q ss_pred HHHhcccchhccCCeEEEEeccccc
Q 008723 378 LLAQAEFNVEAAQQGMVYIDEVDKI 402 (556)
Q Consensus 378 lf~~a~~~l~~a~~~VLfLDEID~l 402 (556)
.+..+...+......+|+|||+..+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 4444444444456679999999753
No 217
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.18 E-value=0.0089 Score=59.89 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=25.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..|.|+|++|+||||+|+.|+ .++.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 468999999999999999999 577766544
No 218
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.14 E-value=0.019 Score=59.98 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=46.3
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccccccCc---cc-----------cchHHHHHHHHHhcccc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VG-----------EDVESILYKLLAQAEFN 385 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~sgy---vG-----------~~~e~~l~~lf~~a~~~ 385 (556)
.....++|+|+||+|||++|..++..+ +.+.+.++........+ .| .+.+..+ ..+. ..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l~---~l 147 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIME---LL 147 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHHH---HH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHHH---HH
Confidence 456778999999999999999988664 45566565543211100 01 1112222 2221 11
Q ss_pred hhccCCeEEEEecccccch
Q 008723 386 VEAAQQGMVYIDEVDKITK 404 (556)
Q Consensus 386 l~~a~~~VLfLDEID~l~~ 404 (556)
+......+|+||.+..+..
T Consensus 148 ~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HTTTCCSEEEEECTTTCCC
T ss_pred HhcCCCCEEEEeChHHhcc
Confidence 1223567999999998874
No 219
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.13 E-value=0.009 Score=56.21 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=23.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999999886
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.12 E-value=0.012 Score=55.71 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC----CCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~----~~fv~i~~s~ 360 (556)
+..|+|.|++|+||||+++.|++.++ .+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 35688999999999999999998774 4566665443
No 221
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.07 E-value=0.012 Score=56.40 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=23.9
Q ss_pred cccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 318 ~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..-..++..+.|.||+|+||||+++.|+..+
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33334456789999999999999999999977
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.03 E-value=0.013 Score=55.44 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..+.|.||+|+||||+++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998763
No 223
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.03 E-value=0.013 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
No 224
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.99 E-value=0.01 Score=57.23 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
+......|+|.||+|+|||++|..|++..+ .++..|..
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 444567899999999999999999998876 55544444
No 225
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.90 E-value=0.041 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=23.2
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
......++|+||||+|||++|..+|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567899999999999999999986
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.86 E-value=0.34 Score=52.72 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
+..|+|+|++|+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4679999999999999999999766 555555555
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.85 E-value=0.037 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
++..++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45678999999999999999999876
No 228
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.83 E-value=0.036 Score=58.66 Aligned_cols=29 Identities=31% Similarity=0.223 Sum_probs=23.5
Q ss_pred cccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 320 NVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 320 ~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.-..+..-++|+||||+|||||++.++-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34455678999999999999999977643
No 229
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.81 E-value=0.013 Score=62.34 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=27.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
..|+|.||+|+|||++|..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999876655443
No 230
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.78 E-value=0.014 Score=56.74 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=27.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~ 355 (556)
..|.|.|++|||||++|+.||+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 568899999999999999999999998875
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.76 E-value=0.072 Score=50.57 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=23.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
.-.+++||+|+||||.+..++..+ +...+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 457889999999999998887665 4444444
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.76 E-value=0.095 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.0
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..++|+|++|+||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34678899999999999999999876
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.69 E-value=0.062 Score=55.03 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=27.3
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
.++..++|+|++|+||||++..||..+ +...+.+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678999999999999999999776 444444433
No 234
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.54 E-value=0.023 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
++..++|.||+|+||||+++.++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999654
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.53 E-value=0.017 Score=53.22 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..+.|.||.|+||||+.|+|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999987
No 236
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.50 E-value=0.023 Score=63.58 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=31.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l 361 (556)
+..|+|+|.+|+||||+|++|++.+ +.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3569999999999999999999999 889988875433
No 237
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.48 E-value=0.034 Score=51.70 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=20.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.++++.+|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 679999999999999998777543
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.42 E-value=0.04 Score=60.01 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.7
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+..++|.|++|+||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345678899999999999999999876
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.41 E-value=0.022 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..+.|.||+|+||||++++|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999999874
No 240
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.40 E-value=0.038 Score=60.40 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
+..|+|+|.||+||||+|+.||+.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999985443
No 241
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.37 E-value=0.066 Score=57.39 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=25.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+..|+|+|.||+||||+++.|++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 357999999999999999999998864443
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.34 E-value=0.067 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 243
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.34 E-value=0.024 Score=55.71 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=27.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i 356 (556)
..+-|.|+||+||||+|+.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4578999999999999999999999877644
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.29 E-value=0.034 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.0
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..+...++|+|+||+|||++|..+|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567899999999999999999875
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.28 E-value=0.033 Score=52.41 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
..+.|.|++|+||||+++.|+..+ +.+++.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 568899999999999999999876 4454444
No 246
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.27 E-value=0.011 Score=55.35 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.0
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
-|+|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 247
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.21 E-value=0.2 Score=48.63 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=23.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~ 357 (556)
.-.+++|+.|+||||.+..++... +...+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 445689999999999998877655 55555544
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.18 E-value=0.031 Score=68.88 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=49.4
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecccccccc---Cccccc-------hHHHHHHHHHhcccchhc
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGED-------VESILYKLLAQAEFNVEA 388 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s~l~~s---gyvG~~-------~e~~l~~lf~~a~~~l~~ 388 (556)
..+...++|.|+||+|||++|..+|..+ +.+++.++..+.... ...|.+ .+..+.+++......+..
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~ 808 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHc
Confidence 4566889999999999999999998765 445666665432210 001100 000122233222222223
Q ss_pred cCCeEEEEecccccch
Q 008723 389 AQQGMVYIDEVDKITK 404 (556)
Q Consensus 389 a~~~VLfLDEID~l~~ 404 (556)
..+.+|+||++..+.+
T Consensus 809 ~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTP 824 (1706)
T ss_dssp TCCSEEEESCSTTCCC
T ss_pred cCCCEEEEechhhhcc
Confidence 4678999999998874
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.17 E-value=0.027 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=23.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+..++|.||+|+|||||++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999998864
No 250
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.17 E-value=0.11 Score=62.97 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.9
Q ss_pred cccccccccCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.++.-..++..+.|+||+|+||||++++|.+++.
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 44555556778899999999999999999998773
No 251
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.11 E-value=0.022 Score=58.16 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.9
Q ss_pred cccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 318 ~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..-..++..+.|+||+|+|||||+++|+..+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444556789999999999999999999987
No 252
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.97 E-value=0.021 Score=54.85 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=17.4
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHH-HHhC
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLA-RHVN 350 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA-~~l~ 350 (556)
.++.-+.|.||+|+||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 345678999999999999999999 8763
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.84 E-value=0.027 Score=51.75 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=18.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTL 345 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraL 345 (556)
++.-+.|.||+|+||||+++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3467889999999999999953
No 254
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.83 E-value=0.2 Score=54.58 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=33.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 276 IGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 276 vGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
+|.+..++.|...+... .- .....|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------~~---------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------CD---------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------TT---------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------cC---------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999888877411 00 0125688999999999999999996
No 255
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.80 E-value=0.029 Score=61.24 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=24.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
...|+|.|.+||||||+|++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999975
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.78 E-value=0.032 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.3
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+...++|.||+|+||||+.++|+..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999999999999876
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.78 E-value=0.035 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.9
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
++.-+.|.||+|+|||||.++|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346789999999999999999998874
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.74 E-value=0.034 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.-|+|.|++|+||||+++.|++.++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999986
No 259
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.72 E-value=0.017 Score=58.27 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=19.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..|.|.|++|+||||+|+.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999875
No 260
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.69 E-value=0.078 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..|.|.|++|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999998885
No 261
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.66 E-value=0.056 Score=58.42 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|+|++|+|||+|+..|+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 569999999999999999988654
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.65 E-value=0.05 Score=51.79 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=25.6
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeec
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~ 357 (556)
.++..++|.||||+|||++|..++..+ +...+.++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345788999999999999998887543 34444443
No 263
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.64 E-value=0.22 Score=47.62 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=24.7
Q ss_pred CcEEEeCCCCChhH-HHHHHHHHHh--CCCeeeecc
Q 008723 326 SNVLLMGPTGSGKT-LLAKTLARHV--NVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKT-tlAraLA~~l--~~~fv~i~~ 358 (556)
.-.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 45788999999999 8888888755 455555543
No 264
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.64 E-value=0.086 Score=56.28 Aligned_cols=35 Identities=37% Similarity=0.491 Sum_probs=27.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~s 359 (556)
+..|+|+|++|+||||++..||..+ +.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999999876 3445545443
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.57 E-value=0.029 Score=54.81 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=29.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445566666677889999999999999999999766
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.56 E-value=0.28 Score=52.36 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~s 359 (556)
+..|+++|++|+||||++-.||..+ |.....+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4678899999999999999999766 5555555554
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.39 E-value=0.047 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+.|.||+|+||||+++.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358899999999999999999876
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.28 E-value=0.039 Score=54.97 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=26.7
Q ss_pred cccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+..-..++.-++|.||||+||||+++.||..+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3344444456789999999999999999999766
No 269
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.27 E-value=0.051 Score=60.16 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=30.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC----CCeeeecccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATT 360 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~----~~fv~i~~s~ 360 (556)
+..|+|+|.+|+||||+|++|++.++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 45789999999999999999999986 6777776543
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.23 E-value=0.031 Score=54.10 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=29.2
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555556667789999999999999999999766
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.22 E-value=0.036 Score=54.15 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345556666677889999999999999999999765
No 272
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.01 E-value=0.24 Score=50.30 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..+.|.||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45688999999999999999999877
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.98 E-value=0.039 Score=54.77 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.6
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445566666677889999999999999999999766
No 274
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.98 E-value=0.046 Score=53.77 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=28.7
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555555666788999999999999999999986
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.93 E-value=0.042 Score=53.08 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=29.6
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++....++..+.|.||+|+||||+.++|+..+
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445556666677889999999999999999999765
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.87 E-value=0.042 Score=54.28 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=29.4
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666677889999999999999999999765
No 277
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.87 E-value=0.049 Score=54.23 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=28.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+.+.++.-..++..+.|.||+|+||||+.+.|+..
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44555565666788999999999999999999986
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.84 E-value=0.035 Score=55.44 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.2
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+|||||.++|+..+
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555555667889999999999999999999766
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.83 E-value=0.041 Score=54.80 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=29.8
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445566666677889999999999999999999765
No 280
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.83 E-value=0.053 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 346788999999999999999998873
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.81 E-value=0.042 Score=55.11 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.0
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455666666677889999999999999999999766
No 282
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.75 E-value=0.031 Score=58.11 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=24.1
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
++..++|.||+|+||||++++|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 347899999999999999999998774
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.75 E-value=0.045 Score=53.11 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=29.8
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666677889999999999999999999876
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.74 E-value=0.044 Score=53.56 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=29.1
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555555667789999999999999999999765
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.73 E-value=0.044 Score=53.89 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=29.8
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445566666677889999999999999999999776
No 286
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.66 E-value=0.071 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.-.+|+||+|+|||++.++|+-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999998875
No 287
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.64 E-value=0.043 Score=53.71 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.3
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555556667789999999999999999999765
No 288
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.62 E-value=0.16 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..-.++.|+||||||++.+.++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 35678999999999999987764
No 289
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.62 E-value=0.079 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
...+.|.||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999998754
No 290
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.62 E-value=0.061 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.2
Q ss_pred ccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 323 LEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 323 ~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.....++|+||+|+||||+++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999654
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.61 E-value=0.047 Score=54.37 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=29.3
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+|||||.++|+..+
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345555555667789999999999999999999776
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.59 E-value=0.05 Score=53.95 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=29.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455566666677889999999999999999999765
No 293
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.56 E-value=0.057 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..+.|.||+|+||||+++.|+..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999999999875
No 294
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.56 E-value=0.066 Score=51.75 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=27.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~ 358 (556)
-.|-|+|..||||||+++.|++ +|.+++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4588999999999999999998 8888776554
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.51 E-value=0.048 Score=54.73 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=29.5
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+|||||.++|+..+
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445556666677889999999999999999999766
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.50 E-value=0.052 Score=53.59 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44555555667789999999999999999999766
No 297
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.49 E-value=0.053 Score=56.65 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.3
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++.-+.|.||+||||||+.++||..+
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345555555667789999999999999999999766
No 298
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.49 E-value=0.13 Score=48.92 Aligned_cols=37 Identities=35% Similarity=0.387 Sum_probs=26.4
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHH----hCCCeeeecc
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARH----VNVPFVIADA 358 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~----l~~~fv~i~~ 358 (556)
..++.-++|.|+||+|||++|..+|.. .+.+.+.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 345678999999999999999877643 2455554443
No 299
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.37 E-value=0.062 Score=56.00 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=29.5
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++.-+.|.||+|+||||+.++||..+
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445555556667889999999999999999999766
No 300
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.33 E-value=0.061 Score=56.62 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=29.5
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+||||||+.|+|+..+
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 445555556667889999999999999999999766
No 301
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.32 E-value=0.054 Score=53.67 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=29.6
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+|||||.++|+..+
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445556666677889999999999999999999766
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.30 E-value=0.055 Score=53.76 Aligned_cols=36 Identities=36% Similarity=0.426 Sum_probs=29.4
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445556666667889999999999999999999765
No 303
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.28 E-value=0.38 Score=46.99 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.4
Q ss_pred CcEEEeCCCCChhHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAra 344 (556)
.++++.+|+|+|||+++-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987644
No 304
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.23 E-value=0.16 Score=61.57 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.1
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..|.|+|++|+||||++++|.+.+
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34455556677889999999999999999999876
No 305
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.16 E-value=0.07 Score=52.30 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..+ ..+.|.||+|+||||+.++|+..+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555556 788999999999999999999766
No 306
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.14 E-value=0.032 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..-|+|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999999983
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.13 E-value=0.057 Score=53.33 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=29.4
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445555556667889999999999999999999776
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.05 E-value=0.08 Score=54.39 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-+.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999885
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.05 E-value=0.041 Score=56.16 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=29.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|+||+|+|||||+++|+..+
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345566666677889999999999999999999766
No 310
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.01 E-value=0.07 Score=55.71 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=28.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+||||||+.++||..+
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344555555567788999999999999999999766
No 311
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.98 E-value=0.072 Score=55.58 Aligned_cols=36 Identities=36% Similarity=0.349 Sum_probs=28.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+|+||||+.++||..+
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344555555567788999999999999999999766
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.97 E-value=0.088 Score=55.98 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5689999999999999999999884
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.96 E-value=0.072 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.-|+|.|.+|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999999984
No 314
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.96 E-value=0.077 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...++|.||+|+||||+.++|+..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3679999999999999999999876
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.96 E-value=0.072 Score=51.05 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+..+.|.||+|+|||||.++|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999999976
No 316
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.92 E-value=0.073 Score=55.80 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+||||||+.++||..+
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344555555567788999999999999999999766
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.90 E-value=0.055 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..+.|+|++|+||||+++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999998873
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.89 E-value=0.6 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..+++.||+|+|||++...+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999997666643
No 319
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.86 E-value=0.074 Score=55.71 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=29.2
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+|+||||+.++||..+
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344555555667789999999999999999999766
No 320
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.83 E-value=0.89 Score=42.50 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.++++..|+|+|||+++-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 57999999999999887665543
No 321
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.79 E-value=0.065 Score=55.68 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=28.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++.-+.|.||+|+||||+.|+||..+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344555555566789999999999999999999766
No 322
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.77 E-value=0.086 Score=51.42 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.-|+|.|++|+||||+++.|++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46689999999999999999998883
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.77 E-value=0.063 Score=59.16 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+..+.|+|++|+||||++++|+..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 46799999999999999999999984
No 324
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.75 E-value=1.2 Score=49.22 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh-------CCCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV-------NVPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l-------~~~fv~i~~s 359 (556)
..|+|+.|.+|+|||++.+.|...+ ...|+.+|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4899999999999999999877544 1246667665
No 325
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.73 E-value=0.085 Score=49.82 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.9
Q ss_pred EEEeCCCCChhHHHHHHHHHHhCCCeeeecccc
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s~ 360 (556)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999977 77776666543
No 326
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.73 E-value=0.091 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
+.-|+|.|++|+||||+++.|++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999884
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.71 E-value=0.095 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..++|.|++|+||||++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999766
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.65 E-value=0.29 Score=52.19 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=26.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
++..++|.|++|+||||++..||..+ +.....+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678899999999999999999877 344444443
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.63 E-value=0.18 Score=50.90 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
+..+++.|++|+||||++..||..+ +.....+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5678899999999999999999776 445554444
No 330
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.58 E-value=0.051 Score=59.31 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|.||+|+||||+.++|+..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999998874
No 331
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.56 E-value=0.13 Score=56.02 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=33.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
++|.+..++.|...+... ......|+|+|++|+|||++|+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~-----------------------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL-----------------------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS-----------------------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc-----------------------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 689999998888876310 00125689999999999999999874
No 332
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.54 E-value=0.08 Score=55.84 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=29.6
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++.-+.|.||+||||||+.++|+..+
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 445566666677889999999999999999999754
No 333
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.38 E-value=0.22 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...-++|+||.|+||||+.|.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 4567899999999999999998843
No 334
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.35 E-value=0.062 Score=55.85 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.1
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-...+.-+.|.||+|+||||+.++||..+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344555555667789999999999999999999765
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.25 E-value=0.12 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+.|.|++|+||||++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 336
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.22 E-value=0.084 Score=52.54 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=28.4
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-.. +..+.|.||+|+||||+.++|+..+
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555555 7789999999999999999999876
No 337
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.21 E-value=0.19 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=16.8
Q ss_pred CcEEEeCCCCChhHHHH-HHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLA-KTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlA-raLA~~ 348 (556)
.-.||.||||||||+++ ..|+..
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999765 444433
No 338
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.11 E-value=0.1 Score=49.36 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=26.1
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+......+||.|++|+||||+|..+.+. |..++
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 4445689999999999999999999874 44333
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.09 E-value=0.083 Score=53.36 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=29.9
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++..+.|.||+|+||||+.++|+..+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455566666677889999999999999999999765
No 340
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.06 E-value=0.17 Score=49.50 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=25.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
.+|++.|++||||||+|-.+|..+ |...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 569999999999999999998776 555443333
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.05 E-value=0.12 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.-|+|.|++|+||||+++.|++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999887
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.89 E-value=0.13 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|.|++|+||||+++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568899999999999999999875
No 343
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.74 E-value=0.12 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.++.|.||+|+||||+.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999876
No 344
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.70 E-value=0.26 Score=48.01 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHH-HHHHHHHHh--CCCeeeec
Q 008723 326 SNVLLMGPTGSGKTL-LAKTLARHV--NVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTt-lAraLA~~l--~~~fv~i~ 357 (556)
.-.+++|+.|+|||| +.+.+.+.. +...+.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 456789999999999 545554433 44444333
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.58 E-value=0.12 Score=54.09 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.8
Q ss_pred hhcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 314 ~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.+.++.-..++.-+.|.||+|+|||||.++|+..+
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455566666677889999999999999999999765
No 346
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.44 E-value=0.16 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
+.-|+|.|++|+||||+++.|++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467899999999999999999999976
No 347
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.14 E-value=0.16 Score=47.00 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|.|++|+|||||.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999753
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.09 E-value=0.28 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|+|.|++|+|||++...+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998643
No 349
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.04 E-value=0.17 Score=49.27 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
+.-|+|.|++|+||||+++.|++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356889999999999999999988743
No 350
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.96 E-value=0.15 Score=47.05 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++|.|++|+|||||.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999754
No 351
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.86 E-value=0.16 Score=52.10 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.9
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
......+.|.|+||+||||+.++|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3445678999999999999999999766
No 352
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.84 E-value=0.47 Score=55.42 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.8
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.+.-++|+||.|+||||+.|.++-
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999963
No 353
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.78 E-value=0.29 Score=45.82 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhC
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
..++|.|.+|+||||++..|+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998764
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.78 E-value=0.17 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|++.|++|+|||++...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 355
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.77 E-value=0.21 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
+..+.|.||+|+|||||.+.|+.....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 467899999999999999999998854
No 356
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.69 E-value=0.51 Score=49.70 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=26.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHhCCCeeeeccc
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l~~~fv~i~~s 359 (556)
..++|.+|+|+|||.++-.++..++.+.+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4599999999999999988887777665555444
No 357
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.68 E-value=0.21 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhC---CCeeeeccc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADAT 359 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~---~~fv~i~~s 359 (556)
+..|+|+|++|+||||+|+.|++.++ .++..++..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 35689999999999999999999874 345555544
No 358
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.66 E-value=0.19 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-|+|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999888
No 359
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.60 E-value=0.28 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.1
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|+++.|++|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998654
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.14 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|.||+|+|||||+|.|+..+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4779999999999999999999765
No 361
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.50 E-value=1.5 Score=49.14 Aligned_cols=19 Identities=53% Similarity=0.690 Sum_probs=17.1
Q ss_pred CCcEEEeCCCCChhHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAK 343 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAr 343 (556)
..++++.+|+|+|||+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4789999999999999883
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.47 E-value=0.16 Score=55.18 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=25.4
Q ss_pred ccccc-ccccCCcEEEeCCCCChhHHHHHH--HHHHh
Q 008723 316 DNDDN-VELEKSNVLLMGPTGSGKTLLAKT--LARHV 349 (556)
Q Consensus 316 ~~~~~-v~~~~~~vLL~GPpGTGKTtlAra--LA~~l 349 (556)
+.+.. -..++..++|.||+|+||||+++. ++..+
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 33444 344568899999999999999999 45444
No 363
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.46 E-value=0.23 Score=51.36 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHhCCC
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l~~~ 352 (556)
+..+.|.||+|+||||+.+.|+..+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4679999999999999999999988543
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.40 E-value=0.21 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|+|.|++|+|||++...+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 365
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.27 E-value=0.21 Score=43.88 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56999999999999999999864
No 366
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.11 E-value=0.25 Score=44.01 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|++|+|||++...+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999875
No 367
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.02 E-value=0.2 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 368
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.00 E-value=0.35 Score=49.00 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=24.4
Q ss_pred cccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 320 ~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.-..++.-++|.|+||+|||++|..+|...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334556779999999999999999998654
No 369
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.97 E-value=0.75 Score=47.19 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=24.1
Q ss_pred cEEEeCCCCChhHHHHHHHHHHh----CCCeeeecc
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~ 358 (556)
++++..|+|+|||+++-.++... +...+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998876554 444444443
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.87 E-value=0.21 Score=43.44 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 371
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.86 E-value=0.21 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998754
No 372
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.74 E-value=0.6 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=18.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.++++.+|+|+|||+++-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999987655433
No 373
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.72 E-value=0.32 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|.|+|+||+||||++..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999776
No 374
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.70 E-value=0.19 Score=55.32 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=28.6
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..+.|.||+|+||||+++.|+..+
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455555667889999999999999999999876
No 375
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.69 E-value=0.35 Score=45.67 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.1
Q ss_pred EEEeCCCCChhHHHHHHHHHHh---CCCee
Q 008723 328 VLLMGPTGSGKTLLAKTLARHV---NVPFV 354 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l---~~~fv 354 (556)
|.|.|.-|+||||.++.|++.+ |.+++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6789999999999999999888 44544
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.59 E-value=0.13 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
+.-+.|.|+.|+||||+++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999999987
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.51 E-value=0.2 Score=45.71 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|+|.|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999985
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.39 E-value=0.36 Score=48.56 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.9
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..+.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999776
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.34 E-value=0.26 Score=43.20 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||++...+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999988543
No 380
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.31 E-value=0.25 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..++|.|++|+|||++.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999985
No 381
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.27 E-value=0.27 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEeCCCCChhHHHHHHHHHHhC
Q 008723 328 VLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 328 vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
|.|.|+.|+||||.++.|++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 382
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.26 E-value=0.27 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||++.+.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998653
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.11 E-value=0.28 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|++|+|||++...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999975
No 384
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.98 E-value=0.86 Score=48.04 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.7
Q ss_pred CcEEEeCCCCChhHHHH
Q 008723 326 SNVLLMGPTGSGKTLLA 342 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlA 342 (556)
.++|+.+|+|+|||+++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 67999999999999986
No 385
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.95 E-value=0.27 Score=43.59 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.9
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|+|.|++|+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5699999999999999999874
No 386
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.92 E-value=0.29 Score=43.17 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|++.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999854
No 387
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.86 E-value=0.29 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.83 E-value=0.29 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 389
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.83 E-value=0.27 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999887666543
No 390
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.77 E-value=0.28 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|.+.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 391
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.65 E-value=0.18 Score=55.61 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=28.3
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..+.|.||+|+||||+++.|+..+
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34444555567889999999999999999999876
No 392
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.64 E-value=0.31 Score=42.74 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999853
No 393
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.63 E-value=0.3 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 394
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.61 E-value=0.65 Score=49.38 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.3
Q ss_pred cccccCCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeec
Q 008723 320 NVELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIAD 357 (556)
Q Consensus 320 ~v~~~~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~ 357 (556)
.-..++.-++|.|+||+|||++|..+|..+ +.+.+.++
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 334456789999999999999999998654 44555444
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.59 E-value=0.31 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 396
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.58 E-value=1.2 Score=49.86 Aligned_cols=20 Identities=55% Similarity=0.723 Sum_probs=17.7
Q ss_pred CCcEEEeCCCCChhHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAra 344 (556)
..++++.+|+|+|||+++..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 57899999999999999843
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.57 E-value=0.28 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 398
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=87.57 E-value=0.45 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..++|+||.|+||||+.|.++...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45678999999999999999999653
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.53 E-value=0.29 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|++.|++|+|||++...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999885
No 400
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.48 E-value=1.1 Score=51.34 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.2
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
.++|+.||+|+|||.++-..+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999886554
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.42 E-value=0.3 Score=43.04 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=18.7
Q ss_pred cEEEeCCCCChhHHHHHHHH
Q 008723 327 NVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA 346 (556)
.|+|.|++|+|||++...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.31 E-value=0.33 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred cEEEeCCCCChhHHHHHHHHHH
Q 008723 327 NVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.|+|.|++|+|||++...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 403
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.30 E-value=0.3 Score=53.46 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=25.0
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...++..+.|.||+|+|||||.++|+..+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566789999999999999999999765
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.20 E-value=0.69 Score=47.30 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
....+.|.|++|+||||++..|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999765
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.18 E-value=0.34 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||++...+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 406
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.15 E-value=0.27 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|.+.|+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999864
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.10 E-value=0.34 Score=43.29 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999854
No 408
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.07 E-value=0.34 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|.+|+|||+++..|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 409
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.05 E-value=0.33 Score=52.57 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=25.2
Q ss_pred cccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 318 DDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 318 ~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..-..+ ..+.|.||+|+||||+.++|+..+
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 3333344 678899999999999999999877
No 410
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.97 E-value=2.2 Score=41.83 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh---CCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~ 357 (556)
.-.+++|+.|+||||.+-.++... +...+.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457789999999998776655433 44444443
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.96 E-value=0.32 Score=42.77 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.1
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
..|+|.|++|+|||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 469999999999999999886
No 412
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.93 E-value=0.39 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.9
Q ss_pred CeEEEEecccccchhhhcccccccCchHHHHHHHHHHHh
Q 008723 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (556)
Q Consensus 391 ~~VLfLDEID~l~~~r~~~~~~~~~s~~~v~~~LL~~LE 429 (556)
++|+||||+|.|..+ ++++|++.||
T Consensus 296 ~~VliIDEa~~l~~~--------------a~~aLlk~lE 320 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE--------------CFTYLHRALE 320 (456)
T ss_dssp ECEEEEESGGGCBHH--------------HHHHHHHHTT
T ss_pred ceEEEEechhhcCHH--------------HHHHHHHHhh
Confidence 469999999999877 9999999998
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.91 E-value=0.32 Score=52.78 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|.||+|+||||+++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4779999999999999999999765
No 414
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=86.78 E-value=0.6 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+||.|+||||+.|.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5678999999999999999999653
No 415
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.73 E-value=0.53 Score=45.25 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=25.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh--CCCeeeec
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPFVIAD 357 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l--~~~fv~i~ 357 (556)
..+++.|.+|+||||++..||..+ +.....++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 568899999999999999999776 44444444
No 416
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=86.71 E-value=0.29 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhCCCe
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVNVPF 353 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~~~f 353 (556)
-|.|+|.+|+||||+|+.|+..+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 378999999999999999999887554
No 417
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.70 E-value=0.33 Score=43.10 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 418
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.70 E-value=0.37 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||++...+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 569999999999999999998543
No 419
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.68 E-value=0.34 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999853
No 420
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.63 E-value=0.21 Score=55.30 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=28.6
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++.-..++..+.|.||+|+||||+++.|+..+
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34455555667889999999999999999999876
No 421
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.54 E-value=0.37 Score=43.41 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|..+|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 422
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.52 E-value=0.34 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|+|.|++|+|||++...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998863
No 423
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.52 E-value=0.19 Score=55.60 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=27.8
Q ss_pred cccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 316 DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 316 ~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+.++.-..++..+.|.||+|+||||+.+.|+..+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3444455567889999999999999999999776
No 424
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.50 E-value=0.36 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|++|+|||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999986
No 425
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.48 E-value=0.38 Score=43.38 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999888654
No 426
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.46 E-value=0.38 Score=43.74 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 427
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.44 E-value=0.36 Score=42.91 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|+|.|++|+|||++...+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999874
No 428
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.39 E-value=0.39 Score=42.86 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998854
No 429
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.34 E-value=0.56 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=19.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999887766544
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.27 E-value=0.4 Score=43.03 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||++...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999999854
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.17 E-value=0.41 Score=42.65 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.10 E-value=0.45 Score=42.81 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.2
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.-.+|+||.|+|||++..+|.-.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999998766
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.10 E-value=0.37 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999864
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.02 E-value=0.38 Score=43.22 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999854
No 435
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.92 E-value=0.4 Score=44.99 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|.+|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999876
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.91 E-value=0.43 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 437
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.78 E-value=0.4 Score=43.52 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|++|+|||++...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999874
No 438
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.77 E-value=0.2 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
....++|.|++|+|||||.++|+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999998874
No 439
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.75 E-value=0.44 Score=43.20 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||++...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 440
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.68 E-value=0.55 Score=55.03 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=34.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHHH
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
++|.++.++.|.+.+... . .....|.|+|+.|+|||+||+.+++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~------~-----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL------N-----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT------T-----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc------c-----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 689999999888877410 0 01246889999999999999988754
No 441
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.67 E-value=0.5 Score=42.16 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||++...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999998853
No 442
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.66 E-value=0.28 Score=44.60 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998754
No 443
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=85.63 E-value=0.54 Score=45.10 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.4
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHhCC
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l~~ 351 (556)
+..-|+|+|.||+||+++|+.+.+.++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 4567999999999999999999987753
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.61 E-value=0.37 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.7
Q ss_pred cEEEeCCCCChhHHHHHHHHHH
Q 008723 327 NVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~ 348 (556)
.|+|.|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998753
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.49 E-value=0.46 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999854
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.49 E-value=0.43 Score=43.04 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||++...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999998754
No 447
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.48 E-value=0.31 Score=51.98 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.2
Q ss_pred cCCc--EEEeCCCCChhHHHHHHHHHH
Q 008723 324 EKSN--VLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 324 ~~~~--vLL~GPpGTGKTtlAraLA~~ 348 (556)
.+.. +.|.||+|+|||||.++|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3455 899999999999999999865
No 448
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.42 E-value=0.18 Score=55.54 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++....++..+.|.||+|+||||+++.|+..+
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34445555667889999999999999999999776
No 449
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.40 E-value=0.47 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999864
No 450
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=85.39 E-value=0.85 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA 346 (556)
+..++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3678999999999999999994
No 451
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.32 E-value=0.47 Score=43.37 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 452
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.13 E-value=0.22 Score=55.08 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=28.6
Q ss_pred hcccccccccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 315 VDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 315 ~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+.++....++..+.|.||+|+||||++++|+..+
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34455555667889999999999999999999876
No 453
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.13 E-value=3 Score=49.74 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.7
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
..+|++||+|+|||.+|-..+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 489999999999999876444
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.07 E-value=0.48 Score=43.40 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||+|...+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 455
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=85.06 E-value=0.46 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.0
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHH
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
....|+|.|++|+|||+|...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998874
No 456
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.01 E-value=0.49 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999999864
No 457
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.00 E-value=0.49 Score=43.23 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999887754
No 458
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.85 E-value=0.51 Score=42.97 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998853
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.83 E-value=0.51 Score=42.84 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 460
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.78 E-value=0.51 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 57999999999999999888754
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.77 E-value=0.51 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 367999999999999999999753
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.75 E-value=0.48 Score=42.44 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.2
Q ss_pred CcEEEeCCCCChhHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~ 347 (556)
..|+|.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5799999999999999999884
No 463
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.75 E-value=0.52 Score=42.91 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999853
No 464
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.70 E-value=0.41 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+||||+..+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 465
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.70 E-value=1.6 Score=44.80 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|.|.|+||+||||+..+|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999765
No 466
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.67 E-value=0.48 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|+|.|++|+|||+|...+...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3679999999999999999998654
No 467
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.66 E-value=0.73 Score=54.62 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=33.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhhccCCCCChhhhhhhcccccccccCCcEEEeCCCCChhHHHHHHHHH
Q 008723 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 275 VvGqe~ak~~L~~al~~~~~rl~~~~~~~~~g~s~~~~~~~~~~~~v~~~~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
.+|.+..++.|.+.+... ...+.|.|+|+.|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~------------------------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------------------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------------------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------------------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 488888888887776410 0125789999999999999999985
No 468
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.64 E-value=1.3 Score=48.85 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=17.7
Q ss_pred CcEEEeCCCCChhHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA 346 (556)
..+++..|+|+|||++....+
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHH
Confidence 679999999999998766555
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.60 E-value=0.53 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|.+|+|||++...+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 679999999999999999998643
No 470
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.56 E-value=0.48 Score=43.29 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999854
No 471
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.54 E-value=0.52 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...+.|.||+|+|||||.++|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4678999999999999999999 55
No 472
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.47 E-value=0.51 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 473
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=84.38 E-value=0.4 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||++...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.37 E-value=0.52 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred cCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 324 ~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
.+..+.|.||+|+|||||.++|+..+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45679999999999999999999654
No 475
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=84.35 E-value=0.56 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
+..++|+||+|+|||++++.|++.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999999999999999876
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.34 E-value=0.36 Score=53.68 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.4
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..++..+.|.||+|+||||+.++|+..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3456789999999999999999999765
No 477
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.18 E-value=0.58 Score=43.35 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.3
Q ss_pred CcEEEeCCCCChhHHHHHHHHHHh
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
..|+|.|++|+|||+|...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998643
No 478
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.14 E-value=0.47 Score=48.55 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=26.0
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
+......++|.|++|+||||+|..+.+. +..++
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4445678999999999999999999875 44443
No 479
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.13 E-value=0.61 Score=48.14 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=27.1
Q ss_pred ccccCCcEEEeCCCCChhHHHHHHHHHHh---CCCeeee
Q 008723 321 VELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIA 356 (556)
Q Consensus 321 v~~~~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i 356 (556)
-..+..-++|.|+||+|||++|..+|..+ +.+.+.+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34455779999999999999999998664 4444433
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.12 E-value=0.51 Score=43.42 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...|+|.|.+|+|||+|...+...-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3679999999999999999998643
No 481
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.06 E-value=0.52 Score=42.79 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 57999999999999999999863
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.06 E-value=0.51 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|++.|++|+|||++...+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999874
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=84.03 E-value=0.52 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||++..+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 367999999999999999998853
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.99 E-value=0.58 Score=43.07 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998853
No 485
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.94 E-value=0.33 Score=51.47 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...+.|.||+|+||||+.++|+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578899999999999999999743
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.94 E-value=0.53 Score=43.35 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 487
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=83.93 E-value=0.41 Score=48.98 Aligned_cols=35 Identities=37% Similarity=0.358 Sum_probs=26.4
Q ss_pred ccccccCCcEEEeCCCCChhHHHHHHHHHHhCCCee
Q 008723 319 DNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (556)
Q Consensus 319 ~~v~~~~~~vLL~GPpGTGKTtlAraLA~~l~~~fv 354 (556)
..+......|||.|++|+|||++|..+.+ -|..++
T Consensus 141 ~~v~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 141 VLLEVFGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 34455678899999999999999988765 344443
No 488
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.82 E-value=0.36 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred CCcEEEeCCCCChhHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLA 346 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA 346 (556)
...|+|.|++|+|||++...+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4679999999999999998876
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.79 E-value=0.27 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred cEEEeCCCCChhHHHHHHHHHHhC
Q 008723 327 NVLLMGPTGSGKTLLAKTLARHVN 350 (556)
Q Consensus 327 ~vLL~GPpGTGKTtlAraLA~~l~ 350 (556)
.+.|.||+|+||||+.++|+..+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 467899999999999999998874
No 490
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.74 E-value=0.65 Score=48.72 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=25.9
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh---CCCeeeecc
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l---~~~fv~i~~ 358 (556)
..|+++.|++|+|||++++.+...+ +..++.+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5899999999999999987776544 445555544
No 491
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.72 E-value=0.44 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|++|+|||++.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998863
No 492
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=83.72 E-value=6.5 Score=46.25 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.9
Q ss_pred CcEEEeCCCCChhHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKT 344 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAra 344 (556)
.++++.+|+|+|||+++..
T Consensus 102 ~~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHH
Confidence 6799999999999998754
No 493
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.63 E-value=0.58 Score=49.63 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=27.3
Q ss_pred cccCCcEEEeCCCCChhHHHHHHHHHHh----CCCeeeecc
Q 008723 322 ELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADA 358 (556)
Q Consensus 322 ~~~~~~vLL~GPpGTGKTtlAraLA~~l----~~~fv~i~~ 358 (556)
..++.-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3445678999999999999999988654 345554443
No 494
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.51 E-value=0.56 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.0
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 495
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.47 E-value=0.54 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999863
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.44 E-value=0.57 Score=43.72 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998854
No 497
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.43 E-value=0.5 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHHh
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~l 349 (556)
...+.|.||+|+||||+.++|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4678899999999999999998655
No 498
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=83.32 E-value=0.51 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCcEEEeCCCCChhHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLAR 347 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~ 347 (556)
...|+|.|.+|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999988863
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=83.20 E-value=0.53 Score=42.69 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCChhHHHHHHHHHH
Q 008723 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 325 ~~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
...|+|.|++|+|||++.+.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988743
No 500
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.18 E-value=0.47 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.7
Q ss_pred CcEEEeCCCCChhHHHHHHHHHH
Q 008723 326 SNVLLMGPTGSGKTLLAKTLARH 348 (556)
Q Consensus 326 ~~vLL~GPpGTGKTtlAraLA~~ 348 (556)
..|+|.|++|+|||||.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999998743
Done!