Citrus Sinensis ID: 008724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
Protein Sequence
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Secondary Structure (PSIPRED)
cccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccHccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEcccccEEEEccccccccHHHHHHHHcccccccEcccccccccccEEEEccccccccccHHHHHHccccccEEEEEccccccccccHccccEcccccHHHHHHcccccccEccccccEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKMMKGLLVEENMSnltsasgevtassgsrvetgtnfyaqhsfsstneatppskkkrslpgnpdpdaevialspkslMATNRFLCEICNkgfqrdqnlqlhrrghnlpwklkqrtnkverkkvyvcpeptcvhhdpsralgdltgikkhfsrkhgekkwkcekcskkyavQSDWKAhskicgtreykcdcgklfsrrdsfiTHRAFCDVLAEESartitvnplfspsqqqpnssathmlnfpshhhhqlqSQGLQALQLQAVkiednnqqhhippwlacpssidlssqlfsgnifsrsllhnenqsaspspnpnstsfapfeppgttgsqhtSATALLQKAAQMGatmstqpsalpapvlrvpvphqthhmpagsastagaagsssglglssredlasgfvhnnlssfgnkaaaaanpaYMEQFAAsttttttgpgtapsllhdmmmssfsctngfdgssssfddalngilnpkgygdfhhaqlsrnnhetrdnngggaggsnaggsdgltrdflglktfphshrdfvniagldqinpsssstfgpqnqnprtwqg
Flexible Loop (DISEMBL)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAqhsfsstneatppskkkrslpgnpdPDAEVIALSPKSLMATNRFLCEICNKGFQRDQnlqlhrrghnlpwklkqrtnkverkkvyvcpeptcvhhdpsralgdlTGIKKHfsrkhgekkwkcekcskkyavqsdwkahskicgtreykcdCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQInpsssstfgpqnqnprtwqg
Low Complexity Region (SEG)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGekkwkcekcskkYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPshhhhqlqsqglqalqlqaVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQsaspspnpnstsfapfEPPGTTGSQHTSATALLQKAAQMGATMSTQpsalpapvlrvpvpHQTHHMPagsastagaagsssglglssREDLASGFVHNNLSSFGNKaaaaaNPAYMEQFAasttttttgpgtapsLLHDMMMSSFSCTNgfdgssssfddALNGILNPKGYGDFHHAQLSRNNHETRdnngggaggsnaggsdgLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Disordered region (IsUnstruct)
**************************************************************************KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN*************************************************HHIPPWLACPSSIDLSSQLFSGNIF*****************************************************************************************************************************************************************************GIL****************************************RDFLGLKTFPHSHRDFVNIAGL***********************
Disordered Region (DISOPRED)
************************************************************GNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNP*****************************************************************************************************************ALLQKAAQM**********************************************************************************************************************************************************************TRDFLGLKTFPHSHRDFVNIAGLDQI********************
Disordered Region (DISEMBL)
MKMMKGLLVEENMSNLT************RVETGTNFYAQHSF*******************PDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK*************EKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFS*********ATHMLNFP***********LQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHN*************TSFAPFE***********ATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQT**********************SSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPS*****************
Disordered Region (DISPRO)
***************************GSRVETGTN*YA****************KRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQ**SSATHMLNFPSHHHHQLQS*******************************************************************************************QMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMM***************S****LNGI**************************************GLTRDFLGLKTFPHSHRDFVNIAGLDQIN*******************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	556	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.298	0.328	0.861	3e-89
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.566	0.675	0.491	1e-86
Q700D2	503	Zinc finger protein JACKD	no	no	0.311	0.343	0.802	2e-85
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.25	0.278	0.333	4e-20
Q943I6	522	Zinc finger protein STOP1	no	no	0.248	0.264	0.34	9e-20
Q2QX40	465	Zinc finger protein STAR3	no	no	0.248	0.296	0.320	7e-18
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.25	0.458	0.335	1e-13
O43313	823	ATM interactor OS=Homo sa	yes	no	0.255	0.172	0.313	7e-12
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.214	0.145	0.307	1e-10
Q8BXX2	756	Zinc finger and BTB domai	no	no	0.232	0.170	0.282	6e-08

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  329 bits (844), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 143/166 (86%), Positives = 155/166 (93%)

Query: 51  PPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK 110
           P  KKKR+LPGNPDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWK
Sbjct: 38  PLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK 97

Query: 111 LKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 170
           LKQRT+K  RK+VYVCPE +CVHH P+RALGDLTGIKKHF RKHGEKKWKCEKC+K+YAV
Sbjct: 98  LKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAV 157

Query: 171 QSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESAR 216
           QSDWKAHSK CGTREY+CDCG +FSRRDSFITHRAFCD LAEE+AR
Sbjct: 158 QSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  320 bits (821), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/372 (49%), Positives = 220/372 (59%), Gaps = 57/372 (15%)

Query: 8   LVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDA 67
           +  E +  ++S SG     S S ++        H  S  N   P  KKKR+LPGNPDP+A
Sbjct: 1   MTSEVLQTISSGSGFAQPQSSSTLD--------HDESLINP--PLVKKKRNLPGNPDPEA 50

Query: 68  EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP 127
           EVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCP
Sbjct: 51  EVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP 110

Query: 128 EPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYK 187
           E TCVHH  SRALGDLTGIKKHF RKHGEKKW CEKC+K+YAVQSDWKAHSK CGTREY+
Sbjct: 111 EKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYR 170

Query: 188 CDCGKLFSRRDSFITHRAFCDVLAEESARTITVN-------------------------- 221
           CDCG +FSRRDSFITHRAFCD LAEE+A+   V+                          
Sbjct: 171 CDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQYLMGTFI 230

Query: 222 PLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWL---- 277
           P   P   QP ++       P+HHH   Q     +L L   +     Q      W+    
Sbjct: 231 PPLQPFVPQPQTN-------PNHHHQHFQPPTSSSLSLWMGQDIAPPQPQPDYDWVFGNA 283

Query: 278 -ACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQ---HTS 333
            A  + ID      + N     +  N N S + +   ++ S    + P    +    + S
Sbjct: 284 KAASACID------NNNTHDEQITQNANASLTTTTTLSAPSLFSSDQPQNANANSNVNMS 337

Query: 334 ATALLQKAAQMG 345
           ATALLQKAA++G
Sbjct: 338 ATALLQKAAEIG 349

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 157/177 (88%), Gaps = 4/177 (2%)

Query: 53  SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 112
           +KKKR+ PG PDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 52  AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK 111

Query: 113 QRTNK-VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQ 171
           QR+ + V +KKVY+CP  TCVHHD SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQ
Sbjct: 112 QRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQ 171

Query: 172 SDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV---NPLFS 225
           SDWKAH+K CGTREYKCDCG LFSR+DSFITHRAFCD L EE AR  ++   NP+ S
Sbjct: 172 SDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVIS 228

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 68  EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV---- 123
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      K  ++ V    
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSE 288

Query: 124 ------YVCPEPTC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 173
                 Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D
Sbjct: 289 PMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIAD 348

Query: 174 WKAHSKICGTREYKCDCGKLFSRRDSFITHRAF 206
            K H K CG  ++ C CG  FSR+D    H A 
Sbjct: 349 LKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)

Query: 69  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK------QRTNKVERKK 122
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K         + + +E   
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 123 V--YVCPEPTC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSDWKA 176
           V  Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 177 HSKICGTREYKCDCGKLFSRRDSFITHRAF 206
           H K CG  ++ C CG  FSR+D    H A 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 69  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRTNK 117
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 118 VERKKVYVCPEPTCVH---HDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 173
            + ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 174 WKAHSKICGTREYKCDCGKLFSRRDSFITHRAF 206
            K H K CG   + C CG  FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 67  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKK---- 122
           A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +    
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 123 --VYVCPEPTCVH--HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 178
              Y C E    H  H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 179 KICGTREYKCDCGKLFSRRDSFITH-RAF 206
           K CG R + C CG  F  + S   H +AF
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 72.8 bits (177), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 60  PGNPDPDA-EVI--ALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ 113
           P  P P A E+I  ++S  S       LC +  C K       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVN 117

Query: 114 RTNKVERK---KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAV 170
            T + + K   K Y CP   C    P R     + +K+HF + H EKK KC KCS  Y  
Sbjct: 118 PTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGT 176

Query: 171 QSDWKAHSKICGTREYKCDCGKLFSRRDSFITH 203
           + D K H++ CG + ++C CG  ++ R +  +H
Sbjct: 177 EWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 83  FLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ---RTNKVERKKVYVCPEPTCVHHDP 136
            LC +  C K       L +H  + H L   +     R +     K Y CP   C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGC-PRGP 138

Query: 137 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSR 196
            R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 197 RDSFITH 203
           R +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q8BXX2|ZBT49_MOUSE Zinc finger and BTB domain-containing protein 49 OS=Mus musculus GN=Zbtb49 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 34/163 (20%)

Query: 48  EATPPSKKKRSLPGNP----DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR 103
           E  P S ++  LPG P    DP         ++L    ++ CE+C K F+   NL+LH+R
Sbjct: 355 ELGPESSREEELPGAPASWEDPS--------QALQPQKQYACELCGKPFKHPSNLELHKR 406

Query: 104 GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 163
            H               +K + C    C  H           ++ H  R  GEK + CE 
Sbjct: 407 SHT-------------GEKPFEC--NICGKH-----FSQAGNLQTHLRRHSGEKPYICEI 446

Query: 164 CSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHR 204
           C K++A   D + H  I  G + + CD CG+ FS   +   H+
Sbjct: 447 CGKRFAASGDVQRHIIIHSGEKPHLCDTCGRGFSNFSNLKEHK 489

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
359475946	509	PREDICTED: zinc finger protein NUTCRACKE	0.877	0.958	0.584	1e-149
147854387	532	hypothetical protein VITISV_006257 [Viti	0.910	0.951	0.522	1e-131
359482846	509	PREDICTED: zinc finger protein NUTCRACKE	0.879	0.960	0.521	1e-129
255572931	552	nucleic acid binding protein, putative [	0.886	0.893	0.511	1e-124
224088818	444	predicted protein [Populus trichocarpa]	0.602	0.754	0.637	1e-121
356522186	498	PREDICTED: zinc finger protein NUTCRACKE	0.836	0.933	0.524	1e-120
357513641	517	Zinc finger protein [Medicago truncatula	0.859	0.924	0.507	1e-119
302398661	539	C2H2L domain class transcription factor	0.852	0.879	0.510	1e-119
356528841	524	PREDICTED: zinc finger protein NUTCRACKE	0.879	0.933	0.507	1e-118
87162706	480	Zinc finger, C2H2-type [Medicago truncat	0.820	0.95	0.490	1e-116

>gi|359475946|ref|XP_002278933.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 336/575 (58%), Positives = 389/575 (67%), Gaps = 87/575 (15%)

Query: 3   MMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGN 62
           M+KGL+V+ENMSNLTSASGE +ASS                   N+A   +KKKRSLPGN
Sbjct: 1   MLKGLMVDENMSNLTSASGEASASS------------------ANQAPAAAKKKRSLPGN 42

Query: 63  PDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKK 122
           PDP+AEV+ALSPK+L ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK  RKK
Sbjct: 43  PDPNAEVVALSPKTLQATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKK 102

Query: 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICG 182
           VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK+YAVQSDWKAHSKICG
Sbjct: 103 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICG 162

Query: 183 TREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFP 242
           TREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT NPL S       SS++H+   P
Sbjct: 163 TREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPLLSSQPG---SSSSHLNLQP 219

Query: 243 SHHHHQLQSQGLQALQLQAVKIEDNNQQHH-------IPPWLAC---------PSSIDLS 286
                QL S GLQA+    + ++   +QHH       IPPWLAC         P SIDLS
Sbjct: 220 -----QLHSHGLQAV----LSLKREQEQHHSFNLKPDIPPWLACPPVLEAGPGPPSIDLS 270

Query: 287 SQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGA 346
           S L         L+++EN      PNPNST    F     T S H SATALLQ+AAQMG 
Sbjct: 271 SSL-FSASLDHPLIYHEN------PNPNST-LPSFH---HTASPHMSATALLQQAAQMGV 319

Query: 347 TMSTQPSALPAPVLRVPVPHQTHHMP--AGSASTAGAAGSS-SGLGLSSREDLASGFVHN 403
           TMS +PS  P P+LR   PHQ H     AG +STA A  ++ S LGLSSR+++ASGF+H 
Sbjct: 320 TMS-KPSPSP-PMLR---PHQAHMSAANAGFSSTAVATSTAGSDLGLSSRDEMASGFIH- 373

Query: 404 NLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSF 463
            L+SFG+KAA  +   +ME  A            APSL HD MMSS S  +GF G   SF
Sbjct: 374 GLASFGSKAAVTS--GFMEHVATGAGAGA----AAPSLFHD-MMSSLSSASGFGG--PSF 424

Query: 464 DDALNGILNPKGYGDFHHAQLS--RNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFP 521
           ++A NG+LNPK   +      +    +H +R ++ GG      GG+DGLTRDFLGL+ F 
Sbjct: 425 EEAFNGMLNPKRENNLQEITKTAMTKSHFSRSDHEGG------GGNDGLTRDFLGLRAF- 477

Query: 522 HSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 556
            SHRDF+NI GLDQ+N  S+S +  QNQN   WQG
Sbjct: 478 -SHRDFLNIPGLDQMN--SASPYEQQNQNQTPWQG 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854387|emb|CAN79105.1| hypothetical protein VITISV_006257 [Vitis vinifera]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 298/570 (52%), Positives = 350/570 (61%), Gaps = 64/570 (11%)

Query: 13  MSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEAT------PPSKKKRSLPGNPDPD 66
           MSNLTSASGE + SSG+R ET   +  Q  F+  N+A       P  KKKR+LPGNPDPD
Sbjct: 1   MSNLTSASGEASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNPDPD 60

Query: 67  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC 126
           AEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVC
Sbjct: 61  AEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVC 120

Query: 127 PEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY 186
           PE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSK+YAVQSDWKAHSK CGTREY
Sbjct: 121 PEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREY 180

Query: 187 KCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQ-----------QQPNSSA 235
           +CDCG LFSRRDSFITHRAFCD LAEESAR IT NP+   SQ                S 
Sbjct: 181 RCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPVLLSSQAAAGPSSSTPHSHSQMSL 240

Query: 236 THMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLAC-----PSSIDLSSQLF 290
                F S+H          A Q++  +   + +   +PPWL+      P+ +D     F
Sbjct: 241 QQQQQFNSNH-------DFHAFQMKKEQQSFSIRSEVVPPWLSSSSSLFPTRLDHD---F 290

Query: 291 SGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPG-TTGSQHTSATALLQKAAQMGATMS 349
           +      +L   +N    P+PNP   S  P  PP   T S H SATALLQKAAQMGATMS
Sbjct: 291 TQTTQDLALHDIQN----PNPNP---SLGPTLPPYHPTLSPHMSATALLQKAAQMGATMS 343

Query: 350 TQP---SALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLS 406
                  A P  ++R   PHQ H     SA  +    +  GL LSSRE++  GFV   L+
Sbjct: 344 KTTGGSGASPPAMIR---PHQAH----VSADHSCNNTTGFGLNLSSREEMGGGFVQ-GLA 395

Query: 407 SFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDA 466
            FGNKAAA  + A     A            +PSLL   MM+S S   GFD  SSSF+DA
Sbjct: 396 PFGNKAAAVPSAAAAAAAATGPGGGA----PSPSLLLQDMMTSLSSATGFD--SSSFEDA 449

Query: 467 LNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRD 526
             G+LN +  G+  H  L   +  T       +GG+   G+DGLTRDFLGL+    SH D
Sbjct: 450 FGGMLNSRKNGNNLHQTLPSKSTTTTATTHHSSGGA---GNDGLTRDFLGLRAL--SHSD 504

Query: 527 FVNIAGLDQINPSSSSTFGPQNQNPRTWQG 556
            ++IAGL      ++S    QNQ  + WQG
Sbjct: 505 ILSIAGLGTC--MNTSPHDHQNQTQKPWQG 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482846|ref|XP_002280155.2| PREDICTED: zinc finger protein NUTCRACKER isoform 2 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 294/564 (52%), Positives = 343/564 (60%), Gaps = 75/564 (13%)

Query: 13  MSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAEVIAL 72
           MSNLTSASGE + SSG+R ET                 P  KKKR+LPGNPDPDAEVIAL
Sbjct: 1   MSNLTSASGEASVSSGNRAET-----------------PSVKKKRNLPGNPDPDAEVIAL 43

Query: 73  SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCV 132
           SPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVCPE +CV
Sbjct: 44  SPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASCV 103

Query: 133 HHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGK 192
           HHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSK+YAVQSDWKAHSK CGTREY+CDCG 
Sbjct: 104 HHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGT 163

Query: 193 LFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNS-----------SATHMLNF 241
           LFSRRDSFITHRAFCD LAEESAR IT NP+   SQ                S      F
Sbjct: 164 LFSRRDSFITHRAFCDALAEESARAITGNPVLLSSQAAAGPSSSTPHSHSQMSLQQQQQF 223

Query: 242 PSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLAC-----PSSIDLSSQLFSGNIFS 296
            S+H          A Q++  +   + +   +PPWL+      P+ +D     F+     
Sbjct: 224 NSNH-------DFHAFQMKKEQQSFSIRSEVVPPWLSSSSSLFPTRLDHD---FTQTTQD 273

Query: 297 RSLLHNENQSASPSPNPNSTSFAPFEPPG-TTGSQHTSATALLQKAAQMGATMSTQP--- 352
            +L   +N    P+PNP   S  P  PP   T S H SATALLQKAAQMGATMS      
Sbjct: 274 LALHDIQN----PNPNP---SLGPTLPPYHPTLSPHMSATALLQKAAQMGATMSKTTGGS 326

Query: 353 SALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKA 412
            A P  ++R   PHQ H     SA  +    +  GL LSSRE++  GFV   L+ FGNKA
Sbjct: 327 GASPPAMIR---PHQAH----VSADHSCNNTTGFGLNLSSREEMGGGFVQ-GLAPFGNKA 378

Query: 413 AAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILN 472
           AA  + A     A            +PSLL   MM+S S   GFD  SSSF+DA  G+LN
Sbjct: 379 AAVPSAAAAAAAATGPGGGA----PSPSLLLQDMMTSLSSATGFD--SSSFEDAFGGMLN 432

Query: 473 PKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAG 532
            +  G+  H  L   +  T       +GG+   G+DGLTRDFLGL+    SH D ++IAG
Sbjct: 433 SRKNGNNLHQTLPSKSTTTTATTHHSSGGA---GNDGLTRDFLGLRAL--SHSDILSIAG 487

Query: 533 LDQINPSSSSTFGPQNQNPRTWQG 556
           L      ++S    QNQ  + WQG
Sbjct: 488 LGTC--MNTSPHDHQNQTQKPWQG 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572931|ref|XP_002527396.1| nucleic acid binding protein, putative [Ricinus communis] gi|223533206|gb|EEF34962.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 289/565 (51%), Positives = 349/565 (61%), Gaps = 72/565 (12%)

Query: 3   MMKGLLV------EENMSNLTSASGEVTASSGSRVETGTNFYAQHSFS--STNEATPPSK 54
           MMKGL+       EENMSNLTSASGE + SSG+R ET  N+  Q  F+     ++ PP+K
Sbjct: 1   MMKGLIFHQQQQQEENMSNLTSASGEASVSSGNRNET--NYPPQQYFAHPPPPQSQPPAK 58

Query: 55  KKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR 114
           KKR+LPGNPDPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR
Sbjct: 59  KKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQR 118

Query: 115 TNK-VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSD 173
           TNK V RKKVYVCPE +CVHHDPSRALGDLTGIKKHFSRKHGEKKWKC+KCSK+YAVQSD
Sbjct: 119 TNKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSD 178

Query: 174 WKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV--NPLFSPSQQQP 231
           WKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT   NPL  PS Q  
Sbjct: 179 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITDAPNPLLIPSNQSA 238

Query: 232 NSSATHMLNFPSHHHH-QLQS--QGLQALQL---QAVKIEDNNQQHHIPPWLACPSSIDL 285
            ++++   N  S H   QL +  Q L A  L   Q         +  +PPWLACP  +  
Sbjct: 239 AAASSATQNPISLHQVPQLMNSHQNLHAFSLKKEQQTFSTTTALRPELPPWLACPPGVLG 298

Query: 286 SSQLFSGNI------------FSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTS 333
           S                     S S+L+ +    S +PNP+     P        S H S
Sbjct: 299 SGSGHGPGPPHHQQTPIEHHHLSSSILNFQQDLGSSNPNPSLGPTLPHYQAAPPPSPHMS 358

Query: 334 ATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSR 393
           ATALLQKAAQMGATMS++ +     ++R   PHQ  H    +  TA +  +++       
Sbjct: 359 ATALLQKAAQMGATMSSK-TTTAGLMMR---PHQHQHQHEQAHVTADSTNNNAN------ 408

Query: 394 EDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCT 453
               +GFV N  S     AA+    +++    A+        G    LL +MM S  S  
Sbjct: 409 ---TTGFVLNLSSRDQELAASGGGGSFVHSLQAA--------GANGVLLQEMMNSLSSAA 457

Query: 454 NGFDG----SSSSFDDA-LNGIL-NPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGS 507
           +GF+G    +++SF+DA ++G+L N K  G+F    LS+    T  NNGG          
Sbjct: 458 SGFEGTATATATSFEDAFVSGVLNNSKKDGNFLDGSLSKAT--TNGNNGG---------- 505

Query: 508 DGLTRDFLGLKTFPHSHRDFVNIAG 532
           + LTRDFLGL+ F  SH D +N+A 
Sbjct: 506 EDLTRDFLGLRAF--SHSDILNMAA 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088818|ref|XP_002308553.1| predicted protein [Populus trichocarpa] gi|222854529|gb|EEE92076.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/394 (63%), Positives = 280/394 (71%), Gaps = 59/394 (14%)

Query: 9   VEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAE 68
           ++ENMSNLTSASGEV+ASSGSR+ETG   + QHSF STN+     KKK++LPGNPDPDAE
Sbjct: 1   MDENMSNLTSASGEVSASSGSRIETGAK-HPQHSFDSTNQPP--PKKKKNLPGNPDPDAE 57

Query: 69  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE 128
           VIALSP SL  TNRFLCEICNKGF+RDQNLQLHRRGHNLPWKLKQRTNK  RKKVYVCPE
Sbjct: 58  VIALSPNSLQTTNRFLCEICNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPE 117

Query: 129 PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC 188
            TCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK+YAVQSDWKAHSKICGTREY+C
Sbjct: 118 VTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRC 177

Query: 189 DCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQ 248
           DCG LFSRRDSFITHRAFCD LAEESAR++TV      S QQP SSA+H++N        
Sbjct: 178 DCGTLFSRRDSFITHRAFCDTLAEESARSMTVL-----SSQQPGSSASHLMN-------- 224

Query: 249 LQSQGLQALQLQAVKIEDNNQQH-------HIPPWLACPSSIDLSSQLFSGNIFSRSLLH 301
                LQAL   +VK E +  Q+        IPPWLACP   +            +S L 
Sbjct: 225 -----LQAL---SVKREQDQNQYLFNPRPDSIPPWLACPPIGEAGPD--------QSFL- 267

Query: 302 NENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMST-QPSALPAPVL 360
              Q  +PSPNP  T   PF+ P +T S H SATALLQKAAQMG T+S   PS   A +L
Sbjct: 268 ---QHGNPSPNP--TVLPPFQ-PSSTASPHMSATALLQKAAQMGVTVSKPSPSPATAAIL 321

Query: 361 RVPVPHQ---------THHMPAGSASTAGAAGSS 385
           R   PHQ          H M +  +S +G  GSS
Sbjct: 322 R---PHQGHMSDHQNPVHDMMSSLSSASGFDGSS 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522186|ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 297/566 (52%), Positives = 347/566 (61%), Gaps = 101/566 (17%)

Query: 8   LVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDA 67
           +VEENMSNLTSASGE +ASSG+R E GT++ A        +  PP KKKR+LPGNPDPDA
Sbjct: 17  IVEENMSNLTSASGEASASSGNRTEIGTSYMA----PPPTQIQPP-KKKRNLPGNPDPDA 71

Query: 68  EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP 127
           EVIALSPKSL+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVCP
Sbjct: 72  EVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCP 131

Query: 128 EPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYK 187
           EP+CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSKKYAVQSDWKAHSK CGTREY+
Sbjct: 132 EPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYR 191

Query: 188 CDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHH 247
           CDCG LFSRRDSFITHRAFCD LAEESAR I  NPL  P QQQ  SS++HM    +    
Sbjct: 192 CDCGTLFSRRDSFITHRAFCDALAEESARAI-ANPLLPPQQQQ--SSSSHMSTLQT---- 244

Query: 248 QLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSA 307
           Q   Q L A  L+            +PPWL  P+++ +   L S +    S  H EN   
Sbjct: 245 QFNPQNLHAFPLKK----------EMPPWLGPPATVVVDHHLSSSSSIMFSPPHQEN--- 291

Query: 308 SPSPNPN-STSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPH 366
              PNP+   + A ++   T  + H SATALLQKAAQMGATMS   S             
Sbjct: 292 ---PNPSLGPTLAAYQ---TVPNPHMSATALLQKAAQMGATMSRSGST------------ 333

Query: 367 QTHHMPAGSASTAGAAGSSSGLGLSSREDLASG--------------FVHNNLSS--FGN 410
                PA +     A  S  GL LSSRED  +               F H  LSS   GN
Sbjct: 334 -----PAMTGPHHHAHVSHFGLNLSSREDTTTTTPSTTTTNANTATVFSHGLLSSSPLGN 388

Query: 411 KAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGI 470
           KAAAAA  +                    SLLHD +++SFS  + F+G  + F+DA   I
Sbjct: 389 KAAAAAAVSSSAP----------------SLLHD-VINSFSSPSAFEG--TPFEDAF--I 427

Query: 471 LNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNI 530
            + K   D H+  L    H+T     G AG +    ++GLTRDFLGL+  P SH D + I
Sbjct: 428 QSSKKLDDDHNLYL----HDTFSKTSGAAGNNI---NEGLTRDFLGLR--PLSHADILTI 478

Query: 531 AGLDQINPSSSSTFGPQNQNPRTWQG 556
           AG+       +     QNQ+ + WQG
Sbjct: 479 AGI------GNCIHDQQNQSQKPWQG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513641|ref|XP_003627109.1| Zinc finger protein [Medicago truncatula] gi|355521131|gb|AET01585.1| Zinc finger protein [Medicago truncatula]

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 279/550 (50%), Positives = 341/550 (62%), Gaps = 72/550 (13%)

Query: 3   MMKGLL-------VEENMSNLTSASGEVTASSGSRVETGTNF---YAQHSFSSTNEATPP 52
           M+KGL+       VEENMSNLTSASGE + SSG+R E GT+      Q  +      + P
Sbjct: 1   MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQSQP 60

Query: 53  SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 112
            KKKR+LPGNPDPDAEVIA+SPKSL+A NRF+CEICNKGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 61  MKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLK 120

Query: 113 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 172
           QRT+K  RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS
Sbjct: 121 QRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 180

Query: 173 DWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN--PLF--SPSQ 228
           DWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR +T N  P+       
Sbjct: 181 DWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNAMPILPSQQQL 240

Query: 229 QQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHH---IPPWLACPSSIDL 285
              +S   HM+N  +  ++    Q L    L  +K E +NQ  +   IPPWL  P ++D 
Sbjct: 241 SSSSSHHHHMINLQNQFNN--PQQDLHNFPL--LKKEQHNQSFNLSEIPPWLG-PHNVD- 294

Query: 286 SSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPG--TTGSQHTSATALLQKAAQ 343
                  N+ S S + +++     +PNP+    +    P   T  S H SATALLQKAAQ
Sbjct: 295 -------NLSSSSSIFSQHHHHQENPNPSLVHVSGPTLPSYQTVPSAHMSATALLQKAAQ 347

Query: 344 MGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHN 403
           MGATM+   SA  +P + +    +TH                    + S  +++  F  N
Sbjct: 348 MGATMNRSGSA-SSPAMNI----KTHQ-------------------VDSLNNVSGNFGLN 383

Query: 404 NLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSF 463
            LSS     +             +TT+T          +HD+M SS S  +GF+  ++ F
Sbjct: 384 LLSS-----SQEQQQHQQNTQETNTTSTYLNN------IHDVMFSSSSSPSGFE--ATHF 430

Query: 464 DDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHS 523
           D+   GI+N K   + HH + S +   T     GG GG   GG++GLTRDFLGL+  P S
Sbjct: 431 DEMFGGIMNSKKDQNLHH-ETSLSKKPTSTAEDGGGGGGGGGGNEGLTRDFLGLR--PLS 487

Query: 524 HRDFVNIAGL 533
           H D ++IAG+
Sbjct: 488 HSDILSIAGI 497

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398661|gb|ADL36625.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 281/550 (51%), Positives = 337/550 (61%), Gaps = 76/550 (13%)

Query: 8   LVEENMSNLTSASGEV-TASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPD 66
           LV+ENMSNLTSASGE  + SSG+R E GTNF +Q  F++  +A P  KKKR+LPGNPDPD
Sbjct: 12  LVDENMSNLTSASGEAASVSSGNRNEIGTNF-SQQFFTTPPQAQPALKKKRNLPGNPDPD 70

Query: 67  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC 126
           AEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVC
Sbjct: 71  AEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVC 130

Query: 127 PEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY 186
           PE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSK+YAVQSDWKAHSK CGTREY
Sbjct: 131 PEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREY 190

Query: 187 KCDCGKLFSRRDSFITHRAFCDVLAEESARTITV--NP---LFSPSQQQPNSSATHMLNF 241
           +CDCG LFSRRDSFITHRAFCD LAEESAR IT   NP   LFS  QQQ N +   +   
Sbjct: 191 RCDCGTLFSRRDSFITHRAFCDALAEESARAITSANNPHHLLFSQQQQQMNLNQVQL--- 247

Query: 242 PSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPS-SIDLSSQLFSGN-IFSRSL 299
                HQ  +Q +    L+  +      +  +PPWL  P+ +IDLSS     +    + L
Sbjct: 248 ----GHQF-NQDIHGFSLKKEQQSFTTLRPDLPPWLGPPNCTIDLSSSSSLFSPTHHQDL 302

Query: 300 -LHNENQSASPSPNPNSTSFAPFEPPGTTG-SQHTSATALLQKAAQMGATMSTQ------ 351
            L + +   S +PNP  +S  P  PP     S H SATALLQKAAQMGATMS +      
Sbjct: 303 SLDDSHNGTSQNPNPCPSSLGPTLPPFHPAPSPHMSATALLQKAAQMGATMSGKHSTTTA 362

Query: 352 ------PSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNL 405
                  SA P P++RV      H    G  S      S+     ++  ++ +G      
Sbjct: 363 AAAAAAASASPQPMVRV------HQHSQGHMSEFSGHVSAFAAAGANATNITTG------ 410

Query: 406 SSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFD- 464
                       PA      +             SLLHDMM +S S   GF+G++   + 
Sbjct: 411 ------------PA-----VSGVHHHHENQHHQASLLHDMM-NSLSSGTGFEGAAFELEA 452

Query: 465 -DALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHS 523
             +L  ILN        +A+   NN    + +G   GG+N    +GLTRDFLGL+    S
Sbjct: 453 FGSLPNILN--------NAKKGSNNSTHFNKSGNDDGGANG---EGLTRDFLGLRAL--S 499

Query: 524 HRDFVNIAGL 533
           H D +NIAG+
Sbjct: 500 HSDILNIAGI 509

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528841|ref|XP_003533006.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 289/570 (50%), Positives = 348/570 (61%), Gaps = 81/570 (14%)

Query: 10  EENMSNLTSASGEVTASSG-SRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAE 68
           EENMSNLTSASGE +A+S  +R E GT++ A          T  SKKKR+LPGNPDPDAE
Sbjct: 13  EENMSNLTSASGEASAASSGNRTEIGTSYMA-----PPPSQTQQSKKKRNLPGNPDPDAE 67

Query: 69  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE 128
           VIALSPKSL+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVCPE
Sbjct: 68  VIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE 127

Query: 129 PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC 188
           P+CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSKKYAVQSDWKAHSK CGTREY+C
Sbjct: 128 PSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 187

Query: 189 DCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQ 248
           DCG LFSRRDSFITHRAFCD LAEESAR IT NPL  P QQQ   S++      +     
Sbjct: 188 DCGTLFSRRDSFITHRAFCDALAEESARAIT-NPLLPPQQQQQQPSSSSHHQMST----- 241

Query: 249 LQSQGLQALQLQAVKIEDNNQQHHI----PPWLACPSSIDLSSQLFSGNIFSRSLL---- 300
           LQ+Q      L A  ++   Q  ++    PPWL  P++  +          S S +    
Sbjct: 242 LQTQFNPQNNLHAFPLKKEQQSFNVRTEMPPWLGPPAATVVVDHHHHHLSSSSSSIMFSP 301

Query: 301 -HNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPV 359
            H EN + +PS  P   ++     P      H SATALLQKAAQMGATMS   S   +P 
Sbjct: 302 PHQENPNPNPSLGPTLAAYKTVANP-----PHMSATALLQKAAQMGATMSRSGS---SPA 353

Query: 360 LRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASG------------FVHNNLSS 407
           +  P      H  A  + +A +A +  GL LSSRED  +             F H  LSS
Sbjct: 354 MTGP------HHHAHVSYSADSASAHFGLNLSSREDTTTSTTTTTTTKTATVFSHGLLSS 407

Query: 408 -FGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDA 466
             GNKA AA +                   +APSLLHD++ S     + F+G  + F+DA
Sbjct: 408 PLGNKAGAAVS------------------SSAPSLLHDVINSFSVSPSAFEG--TPFEDA 447

Query: 467 LNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRD 526
              I + K   D  H  L  ++  ++ ++  GA G+    ++GLTRDFLGL+  P SH D
Sbjct: 448 F--IQSSKKLDDDDHHNLYLHDTFSKTSSSTGAAGN---INEGLTRDFLGLR--PLSHTD 500

Query: 527 FVNIAGLDQINPSSSSTFGPQNQNPRTWQG 556
            + IAG+       +     QNQ+ + WQG
Sbjct: 501 ILTIAGI------GNCIHDHQNQSQKPWQG 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162706|gb|ABD28501.1| Zinc finger, C2H2-type [Medicago truncatula]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 271/553 (49%), Positives = 328/553 (59%), Gaps = 97/553 (17%)

Query: 13  MSNLTSASGEVTA-SSGSRVETGTNFYAQHSFSSTNEAT---PPSKKKRSLPGNPDPDAE 68
           MSNLTSASGE +A SSG+R       ++Q  F+S+   T    P+KK+R+LPGNPDP AE
Sbjct: 1   MSNLTSASGEASANSSGNRTHEVDAKFSQQYFASSQTQTHDETPAKKRRNLPGNPDPQAE 60

Query: 69  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE 128
           VIALSPK+LMATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKLKQRT+   RKKVYVCPE
Sbjct: 61  VIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPE 120

Query: 129 PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC 188
           PTCVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSKKYAVQSDWKAHSK CGTREY+C
Sbjct: 121 PTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 180

Query: 189 DCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQ 248
           DCG LFSRRDSFITHRAFCD LAEES+RT+   P       QPNS          H+ + 
Sbjct: 181 DCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPT------QPNS---------HHNMNN 225

Query: 249 LQSQGLQALQL----QAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNEN 304
           LQ+Q +Q   L    Q+  +    Q+  IP WL C SSIDLSS   S     + L   EN
Sbjct: 226 LQTQDIQGFTLKKEHQSFNMLRPEQEVQIPSWL-CQSSIDLSSNYSS---LDQDLHLYEN 281

Query: 305 QSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPV 364
               P+P    TS  P   P +  S H SATALLQKAAQMGAT S    ++ +       
Sbjct: 282 ----PNPRNGPTSTLPSYQPSSAASPHMSATALLQKAAQMGATSSCSSQSMMSGT----- 332

Query: 365 PHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQF 424
            HQ  H+    ++T     S+    L             NLSS  ++             
Sbjct: 333 -HQQGHVSIVDSATNNMINSNGNFSL-------------NLSSCEDQ------------- 365

Query: 425 AASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNG-ILNPKGYGDFHHAQ 483
                               M+ +SFS ++GF G  +SF+D   G IL+     + +H  
Sbjct: 366 --------------------MINNSFS-SSGFHG--TSFEDTFAGNILHSNQDHNINHDG 402

Query: 484 LSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQ-INPSSSS 542
            +     T +++   AGG+NA      TRDFLGLK  P S  D + IAG+   +NPS+S+
Sbjct: 403 DNDIPKTTTNDDDVAAGGNNA-----FTRDFLGLK--PLSDSDILTIAGMGSCMNPSNSN 455

Query: 543 TFGPQNQNPRTWQ 555
                +Q P  W+
Sbjct: 456 HQENHSQKP--WE 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	556
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.476	0.582	0.605	4.8e-92
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.361	0.397	0.689	4e-83
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.332	0.37	0.761	2.5e-81
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.397	0.549	0.640	3.5e-80
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.305	0.381	0.783	5.2e-79
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.345	0.412	0.713	2.8e-78
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.338	0.373	0.687	3.5e-78
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.366	0.395	0.647	9.5e-78
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.546	0.672	0.516	1.5e-77
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.338	0.312	0.701	8.5e-77

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 4.8e-92, Sum P(3) = 4.8e-92
 Identities = 166/274 (60%), Positives = 189/274 (68%)

Query:     9 VEENMSNLTSASGE-VTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDA 67
             +EENMSNLTSASG+  + SSG+R ET  +   QH            K+KR+ PGNPDP+A
Sbjct:    17 MEENMSNLTSASGDQASVSSGNRTETSGSNINQHHQEQCFVPQSSLKRKRNQPGNPDPEA 76

Query:    68 EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKKVYVC 126
             EV+ALSPK+LMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKLKQR+NK V RKKVYVC
Sbjct:    77 EVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVC 136

Query:   127 PEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREY 186
             PEP CVHH PSRALGDLTGIKKHF RKHG            YAVQSDWKAH+K CGT+EY
Sbjct:   137 PEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEY 196

Query:   187 KCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPXXXX 246
             KCDCG LFSRRDSFITHRAFCD LAEESAR +  NP+   +   P+    H         
Sbjct:   197 KCDCGTLFSRRDSFITHRAFCDALAEESARAMP-NPIMIQASNSPHHHH-HQTQQNIGFS 254

Query:   247 XXXXXXXXXXXXXXXVKIEDNNQQHH---IPPWL 277
                            +K E++  QHH   IPPWL
Sbjct:   255 SSSQNIISNSNLHGPMKQEES--QHHYQNIPPWL 286

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 4.0e-83, Sum P(3) = 4.0e-83
 Identities = 140/203 (68%), Positives = 159/203 (78%)

Query:    16 LTSASGEVTASSGSRVETGTNFYAQHSFSSTNEA-TPPS-KKKRSLPGNPDPDAEVIALS 73
             +T+    +++S G    + T  +  H     +E+  PP  KKKR+LPGNPDP+AEVIALS
Sbjct:     1 MTTEDQTISSSGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPDPEAEVIALS 60

Query:    74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVH 133
             PK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCPE +CVH
Sbjct:    61 PKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVH 120

Query:   134 HDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKL 193
             H P+RALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTREY+CDCG +
Sbjct:   121 HHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTI 180

Query:   194 FSRRDSFITHRAFCDVLAEESAR 216
             FSRRDSFITHRAFCD LAEE+AR
Sbjct:   181 FSRRDSFITHRAFCDALAEETAR 203

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 2.5e-81, Sum P(3) = 2.5e-81
 Identities = 144/189 (76%), Positives = 153/189 (80%)

Query:    42 SFSST-NE-ATPPS--KKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQN 97
             S SST N+  TP S  KKKR+LPG PDPDAEVIALSPK+LMATNRF+CEICNKGFQRDQN
Sbjct:    16 SVSSTGNQNLTPKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQN 75

Query:    98 LQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXX 157
             LQLHRRGHNLPWKL+QR+ K  RKKVYVCP   CVHHDPSRALGDLTGIKKHF RKHG  
Sbjct:    76 LQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEK 135

Query:   158 XXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESART 217
                       YAVQSDWKAHSKICGT+EYKCDCG LFSRRDSFITHRAFCD LAEESA+ 
Sbjct:   136 KWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAKN 195

Query:   218 ITVNPLFSP 226
              T +    P
Sbjct:   196 HTQSKKLYP 204

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 3.5e-80, Sum P(3) = 3.5e-80
 Identities = 148/231 (64%), Positives = 172/231 (74%)

Query:    16 LTSASGEVTASSGSR-VETGTNFYAQHSFSS---TNEATPPSKKKRSLPGNPDPDAEVIA 71
             L+S S E +ASSG+  + T   F   H+  S   T+  T   KKKR LPGNPDPDAEVIA
Sbjct:    11 LSSLSTEASASSGNNTLSTIQEFSGFHNVISSVCTHTETHKPKKKRGLPGNPDPDAEVIA 70

Query:    72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR-TNKVERKKVYVCPEPT 130
             LSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ+ T + ++KKVYVCPE  
Sbjct:    71 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETN 130

Query:   131 CVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDC 190
             C HH PSRALGDLTGIKKHF RKHG            YAVQSDWKAH+KICGTR+Y+CDC
Sbjct:   131 CAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDC 190

Query:   191 GKLFSRRDSFITHRAFCDVLAEESAR--TITVNPLFSPSQQQPNSSATHML 239
             G LFSR+D+FITHRAFCD LAEESAR  + + + L +P+   PN    H +
Sbjct:   191 GTLFSRKDTFITHRAFCDALAEESARLHSTSSSNLTNPN---PNFQGHHFM 238

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 134/171 (78%), Positives = 149/171 (87%)

Query:    53 SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 112
             +K+KR+LPGNPDPDAEVIALSP SLM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLK
Sbjct:    38 AKRKRNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLK 97

Query:   113 QRTNKVE-RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQ 171
             QRTNK + +KKVY+CPE TCVHHDP+RALGDLTGIKKHFSRKHG            YAV 
Sbjct:    98 QRTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVM 157

Query:   172 SDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNP 222
             SDWKAHSKICGT+EY+CDCG LFSR+DSFITHRAFCD LAEESAR ++V P
Sbjct:   158 SDWKAHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVSVPP 208

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 142/199 (71%), Positives = 158/199 (79%)

Query:    31 VETGTNFYAQHSFSST---NEA--TPPS-KKKRSLPGNPDPDAEVIALSPKSLMATNRFL 84
             + +G+ F AQ   SST   +E+   PP  KKKR+LPGNPDP+AEVIALSP +LMATNRFL
Sbjct:     9 ISSGSGF-AQPQSSSTLDHDESLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFL 67

Query:    85 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
             CE+C KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCPE TCVHH  SRALGDLT
Sbjct:    68 CEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLT 127

Query:   145 GIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHR 204
             GIKKHF RKHG            YAVQSDWKAHSK CGTREY+CDCG +FSRRDSFITHR
Sbjct:   128 GIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHR 187

Query:   205 AFCDVLAEESARTITVNPL 223
             AFCD LAEE+A+   V+ L
Sbjct:   188 AFCDALAEETAKINAVSHL 206

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
 Identities = 132/192 (68%), Positives = 150/192 (78%)

Query:    53 SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 112
             +KKKR+ PG PDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLK
Sbjct:    52 AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK 111

Query:   113 QRTNK-VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQ 171
             QR+ + V +KKVY+CP  TCVHHD SRALGDLTGIKKH+SRKHG            YAVQ
Sbjct:   112 QRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQ 171

Query:   172 SDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV---NPLFSPSQ 228
             SDWKAH+K CGTREYKCDCG LFSR+DSFITHRAFCD L EE AR  ++   NP+ S + 
Sbjct:   172 SDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTN 231

Query:   229 QQPNSSATHMLN 240
                 + +  M N
Sbjct:   232 LNFGNESNVMNN 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
 Identities = 138/213 (64%), Positives = 165/213 (77%)

Query:    14 SNLTSASGEVTASSGSRVETGTN-FYAQHSFSST----NEATPPSKKKRSLPGNPDPDAE 68
             S+ +SA      SSG    TG N F  + +F S     N + PP KK+R+ PGNP+PDAE
Sbjct:    13 SSSSSAQPFFITSSG----TGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAE 68

Query:    69 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE 128
             V+ALSPK+LMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKLKQ++ K  ++KVY+CPE
Sbjct:    69 VVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPE 128

Query:   129 PTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKC 188
             PTCVHHDPSRALGDLTGIKKH+ RKHG            YAVQSDWKAHSK CGT+EY+C
Sbjct:   129 PTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRC 188

Query:   189 DCGKLFSRRDSFITHRAFCDVLAEESARTITVN 221
             DCG +FSRRDS+ITHRAFCD L +E+AR  TV+
Sbjct:   189 DCGTIFSRRDSYITHRAFCDALIQETARNPTVS 221

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
 Identities = 174/337 (51%), Positives = 206/337 (61%)

Query:    39 AQHSFSSTNEATP-PS---KKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQR 94
             A  S SST    P P+   KKKR+LPG PDP++EVIALSPK+L+ATNRF+CEICNKGFQR
Sbjct:    15 ASVSISSTGNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQR 74

Query:    95 DQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH 154
             DQNLQLHRRGHNLPWKL+Q++NK  +KKVYVCPE +CVHHDPSRALGDLTGIKKHF RKH
Sbjct:    75 DQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKH 134

Query:   155 GXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEES 214
             G            YAVQSDWKAHSKICGT+EYKCDCG LFSRRDSFITHRAFCD LAEE+
Sbjct:   135 GEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEEN 194

Query:   215 ARTITVNPLFSPSQQQPNSSATHMLNFPXXXXXXXXXXXXXXXXXXXVKIEDNNQQHHIP 274
             AR+       S S++Q     T     P                   + I+ + +    P
Sbjct:   195 ARSH-----HSQSKKQNPEILTRKNPVPNPVPAPVDTESAKIKSSSTLTIKQS-ESPKTP 248

Query:   275 PWLAC----PSSIDL--SSQLFSGNIFSRSLLHNENQXXXXXXXXXXXXXXXXEP----- 323
             P +      P+S+++  S+ +F+G +F  S                       EP     
Sbjct:   249 PEIVQEAPKPTSLNVVTSNGVFAG-LFESSSASPSIYTTSSSSKSLFASSSSIEPISLGL 307

Query:   324 ---PGTT--GSQ--HT----SATALLQKAAQMGATMS 349
                 G++  GS   H     SATALLQKAAQMGA  S
Sbjct:   308 STSHGSSFLGSNRFHAQPAMSATALLQKAAQMGAASS 344

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 134/191 (70%), Positives = 151/191 (79%)

Query:    51 PPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK 110
             PP KKKR+ P  P+ DAEVIALSPK+LMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWK
Sbjct:    49 PPQKKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWK 108

Query:   111 LKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAV 170
             LKQ++ K  ++KVY+CPEP+CVHHDPSRALGDLTGIKKH+ RKHG            YAV
Sbjct:   109 LKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAV 168

Query:   171 QSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFS-PSQQ 229
             QSDWKAHSK CGT+EY+CDCG LFSRRDSFITHRAFCD LA+ESAR  T   L S PS  
Sbjct:   169 QSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPT--SLTSLPSHH 226

Query:   230 QPNSSATHMLN 240
              P    T+  N
Sbjct:   227 FPYGQNTNNSN 237

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	556
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.88
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.81
KOG3576	267	consensus Ovo and related transcription factors [T	99.66
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.49
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.48
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.35
KOG3608	467	consensus Zn finger proteins [General function pre	99.29
KOG3576	267	consensus Ovo and related transcription factors [T	99.2
KOG3608	467	consensus Zn finger proteins [General function pre	99.12
PLN03086	567	PRLI-interacting factor K; Provisional	99.1
PHA00733	128	hypothetical protein	98.8
PHA00733	128	hypothetical protein	98.75
KOG3993	500	consensus Transcription factor (contains Zn finger	98.75
PLN03086	567	PRLI-interacting factor K; Provisional	98.51
PHA02768	55	hypothetical protein; Provisional	98.35
PHA02768	55	hypothetical protein; Provisional	98.34
KOG3993	500	consensus Transcription factor (contains Zn finger	98.18
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.15
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.83
PHA00616	44	hypothetical protein	97.53
PHA00732	79	hypothetical protein	97.51
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.4
PHA00732	79	hypothetical protein	97.37
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.29
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.22
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.19
PHA00616	44	hypothetical protein	97.13
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.73
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.62
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.57
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.38
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.34
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.23
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.19
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.05
KOG1146	1406	consensus Homeobox protein [General function predi	95.99
smart00355	26	ZnF_C2H2 zinc finger.	95.6
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.52
COG5048	467	FOG: Zn-finger [General function prediction only]	95.43
PRK04860	160	hypothetical protein; Provisional	95.16
COG5048	467	FOG: Zn-finger [General function prediction only]	94.55
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.37
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.24
smart00355	26	ZnF_C2H2 zinc finger.	94.13
KOG1146	1406	consensus Homeobox protein [General function predi	93.05
PRK04860	160	hypothetical protein; Provisional	92.92
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	92.8
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.47
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	91.63
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.46
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	90.29
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.81
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	89.19
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.17
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.15
KOG2893	341	consensus Zn finger protein [General function pred	87.35
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	87.17
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.02
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	87.01
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	85.47
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	84.69
KOG1883	1517	consensus Cofactor required for Sp1 transcriptiona	84.55
KOG4124	442	consensus Putative transcriptional repressor regul	82.32
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.86
KOG2893	341	consensus Zn finger protein [General function pred	80.07

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.88  E-value=3.1e-23  Score=203.27  Aligned_cols=131  Identities=22%  Similarity=0.414  Sum_probs=105.7

Q ss_pred             CCCCCCCCCCCCchhhhcCccccC---CCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCc
Q 008724           55 KKRSLPGNPDPDAEVIALSPKSLM---ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTC  131 (556)
Q Consensus        55 ~~~~~p~~~~~~~~~~~~~~~~~~---~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C  131 (556)
                      .++.++++......-+..|+..|.   ..+.|.|++|+|.|.....|+.|+|+|+               -+++|.+|  
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~iC--  193 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECGIC--  193 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccccc--
Confidence            344444555555555555555442   3566777777777777777777777775               56788888  


Q ss_pred             ccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhh
Q 008724          132 VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       132 ~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                           ||.|.+.+-|+.|+|+|+|||||.|..|+|+|..+++|+.||++ .+.|+|.|. |+|.|.+++.|.+|....
T Consensus       194 -----GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  194 -----GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             -----cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence                 99999999999999999999999999999999999999999999 688999999 999999999999998753

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.81  E-value=4.3e-20  Score=181.24  Aligned_cols=124  Identities=20%  Similarity=0.474  Sum_probs=109.1

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      .....+|+|..|||.|.+..+|.+|+.+|.-          ....+.+.|++|       +|.|...-.|+.|+|+|+  
T Consensus       125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~----------~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--  185 (279)
T KOG2462|consen  125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRS----------LDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--  185 (279)
T ss_pred             cccCCceeccccccccccccccchhhccccc----------ccccccccCCCC-------CceeeehHHHhhHhhccC--
Confidence            3456789999999999999999999999961          114688999999       999999999999999998  


Q ss_pred             cccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh----chhcccccccc
Q 008724          157 KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD----VLAEESARTIT  219 (556)
Q Consensus       157 kpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~----~~~~~~~~~~~  219 (556)
                      -+++|.+|||.|.+.+.|+.|+|+ +|||||.|. |+|.|..+++|+.|+++|.    ..+..+.+.+.
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA  254 (279)
T ss_pred             CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence            679999999999999999999999 999999999 9999999999999999986    33444544443

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.66  E-value=1.7e-17  Score=155.50  Aligned_cols=113  Identities=24%  Similarity=0.528  Sum_probs=104.8

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      .....|.|.+|+|.|....-|.+|++.|.             ..|.|-|..|       +|.|.+.-+|++|+|+|+|.|
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            44678999999999999999999999998             7899999999       999999999999999999999


Q ss_pred             ccccccCCccccccccccccccc-cC-----------Ccceecc-CCCccCChhHHHHHHhhhhch
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI-CG-----------TREYKCD-CGKLFSRRDSFITHRAFCDVL  210 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~-~g-----------ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  210 (556)
                      ||+|..|+|.|+.+-.|..|++. ||           +|.|.|+ ||.+-.+...+..|++.|+..
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            99999999999999999999887 75           4679999 999999999999999998743

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.49  E-value=1.1e-14  Score=159.81  Aligned_cols=58  Identities=21%  Similarity=0.499  Sum_probs=54.0

Q ss_pred             cccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhhchhccccc
Q 008724          159 WKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVLAEESAR  216 (556)
Q Consensus       159 y~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~~~~  216 (556)
                      ..|.+|+|.|.....|..|+|+ +++|||.|. |++.|..+..|+.||.+|+.....+.|
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            5699999999999999999999 899999999 999999999999999999877766665

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.48  E-value=5e-15  Score=159.92  Aligned_cols=106  Identities=25%  Similarity=0.564  Sum_probs=95.7

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccC------
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG------  155 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~------  155 (556)
                      ...|++|.+.|.+...|+.|++..+.           ..+..|.|..|       .+.|.++..|.+||.+|..      
T Consensus       210 lltcpycdrgykrltslkeHikyrhe-----------kne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHE-----------KNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHh-----------hCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence            46799999999999999999776541           15667999999       9999999999999999862      


Q ss_pred             -------CcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHh
Q 008724          156 -------EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRA  205 (556)
Q Consensus       156 -------ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~  205 (556)
                             .|+|+|.+|+|.|+.+.+|+.|+|+ .|||||.|. |+|+|+...++..|+.
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence                   4789999999999999999999999 799999999 9999999999999984

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.48  E-value=1.3e-14  Score=159.35  Aligned_cols=51  Identities=24%  Similarity=0.594  Sum_probs=48.5

Q ss_pred             ccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |-.|-+|.|...-++.|+.|.|+ +|||||+|. ||+.|.++.+|+.|+-+|.
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            45799999999999999999999 899999999 9999999999999999986

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.35  E-value=2.2e-13  Score=147.42  Aligned_cols=82  Identities=24%  Similarity=0.581  Sum_probs=71.3

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcc
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKK  158 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekp  158 (556)
                      ....|.|+.|+|.|...+.|.+|.-.|.             |.+||.|.+|       .|+|+.+.+|..|+|.|.||||
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKP  950 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKP  950 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCc
Confidence            3457899999999999999999988887             8899999888       8899999999999999999999


Q ss_pred             cccccCCccccccccccccccc
Q 008724          159 WKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       159 y~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.|+.|+|+|.....+..||..
T Consensus       951 fQCdKClKRFSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  951 FQCDKCLKRFSHSGSYSQHMNH  972 (1007)
T ss_pred             chhhhhhhhcccccchHhhhcc
Confidence            9999999999888888888863

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.29  E-value=4.9e-13  Score=134.66  Aligned_cols=139  Identities=17%  Similarity=0.311  Sum_probs=100.9

Q ss_pred             CCCCchhhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcC----CCchhhccccc---------cc--CCceeeCC
Q 008724           63 PDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN----LPWKLKQRTNK---------VE--RKKVYVCP  127 (556)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~----~p~~~~~~~~~---------~~--~~k~y~C~  127 (556)
                      .......+..+.+.|..+|...|+.||..|.++..|.-|++..+    .++.|+.+.+.         |+  ....|+|+
T Consensus       188 ~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCp  267 (467)
T KOG3608|consen  188 HMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCP  267 (467)
T ss_pred             hhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccc
Confidence            34556678888999999999999999999999999999987664    45555543221         11  33567888


Q ss_pred             CCCcccCCCCCcccCccchhhhhc-cccCCcccccccCCccccccccccccccccCCcceecc---CCCccCChhHHHHH
Q 008724          128 EPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD---CGKLFSRRDSFITH  203 (556)
Q Consensus       128 ~C~C~~~~~~k~F~~~s~L~~H~r-~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~---Cgk~F~~~~~L~~H  203 (556)
                      .|       +......+.|.+|++ +|..+|||+|+.|++.|.+.++|.+|..+|.+--|.|+   |..+|.....+++|
T Consensus       268 lC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  268 LC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             cc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHH
Confidence            87       777777888888877 56677888888888888888888888777655566664   66666666666666


Q ss_pred             Hhhhh
Q 008724          204 RAFCD  208 (556)
Q Consensus       204 ~~~h~  208 (556)
                      .+.++
T Consensus       341 ~~evh  345 (467)
T KOG3608|consen  341 FLEVH  345 (467)
T ss_pred             HHHhc
Confidence            65544

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.20  E-value=1.8e-12  Score=121.86  Aligned_cols=82  Identities=26%  Similarity=0.511  Sum_probs=78.1

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCCh
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR  197 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  197 (556)
                      +...|.|.+|       +|.|....-|.+|++-|...|.|-|..|||.|...-+|++|+|+ +|.+||+|. |+|.|..+
T Consensus       114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            5678999999       99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             hHHHHHHhhhh
Q 008724          198 DSFITHRAFCD  208 (556)
Q Consensus       198 ~~L~~H~~~h~  208 (556)
                      .+|..|.+..|
T Consensus       187 csleshl~kvh  197 (267)
T KOG3576|consen  187 CSLESHLKKVH  197 (267)
T ss_pred             ccHHHHHHHHc
Confidence            99999988655

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.12  E-value=9.7e-12  Score=125.45  Aligned_cols=131  Identities=21%  Similarity=0.332  Sum_probs=110.6

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhc--------------ccccccCCceeeCCCCCcccCCCCCccc
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ--------------RTNKVERKKVYVCPEPTCVHHDPSRALG  141 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~--------------~~~~~~~~k~y~C~~C~C~~~~~~k~F~  141 (556)
                      .....++|.|..|.|.|.++..|+.|++.|...|+|..              ...+|...|+|+|+.|       ++.|.
T Consensus       231 t~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~C-------d~~c~  303 (467)
T KOG3608|consen  231 TELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDEC-------DTRCV  303 (467)
T ss_pred             hhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccch-------hhhhc
Confidence            44556799999999999999999999999986666532              1234557899999999       99999


Q ss_pred             CccchhhhhccccCCccccccc--CCccccccccccccccc-c---CCcceecc-CCCccCChhHHHHHHhhhhchhccc
Q 008724          142 DLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-C---GTREYKCD-CGKLFSRRDSFITHRAFCDVLAEES  214 (556)
Q Consensus       142 ~~s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~---gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~~  214 (556)
                      +.+.|.+|...|. +-.|.|+.  |..+|.....+++|++. |   .+-+|.|. |.+.|.+..+|.+|+...|....+.
T Consensus       304 ~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~Ps  382 (467)
T KOG3608|consen  304 RESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPS  382 (467)
T ss_pred             cHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCC
Confidence            9999999999988 77899988  99999999999999998 5   34679999 9999999999999987766544443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.10  E-value=8.5e-11  Score=128.62  Aligned_cols=104  Identities=22%  Similarity=0.467  Sum_probs=89.4

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCccc
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  159 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy  159 (556)
                      ++.+.|++|++.|. ...|+.|++.|+               ++|.|+ |       ++.+ .+..|..|+++|..+|++
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi  505 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI  505 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence            45678999999996 688999999876               679998 7       7655 668999999999999999


Q ss_pred             ccccCCccccc----------cccccccccccCCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          160 KCEKCSKKYAV----------QSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       160 ~C~~Cgk~F~~----------~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      .|.+|++.|..          ...|..|+.++|.+++.|. |++.|..+ .|..|+..+|.
T Consensus       506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            99999999952          3479999999999999999 99999887 57889887764

>PHA00733 hypothetical protein

Probab=98.80  E-value=1.6e-09  Score=97.90  Aligned_cols=83  Identities=16%  Similarity=0.285  Sum_probs=68.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhh------hhccccCCcccccccCCccccccccccccccccCCcceecc-CCC
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKK------HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGK  192 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~------H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk  192 (556)
                      ..+++.|.+|       .+.|.....|..      |+. ++++++|.|+.|++.|.....|..|++.+ +++|.|. |++
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK  107 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGK  107 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCC
Confidence            4678999998       666666555444      433 34589999999999999999999999875 5689999 999


Q ss_pred             ccCChhHHHHHHhhhhchh
Q 008724          193 LFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       193 ~F~~~~~L~~H~~~h~~~~  211 (556)
                      .|.....|.+|+...|..+
T Consensus       108 ~F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             ccCCHHHHHHHHHHhcCcc
Confidence            9999999999998877654

>PHA00733 hypothetical protein

Probab=98.75  E-value=2.7e-09  Score=96.46  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             hhhhcCccccCCCCccccCCCCCccCChHHHHHH--HHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccc
Q 008724           68 EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTG  145 (556)
Q Consensus        68 ~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H--~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~  145 (556)
                      +.+..........++++|.+|.+.|.....|..|  .+.|.          .....++|.|+.|       ++.|.....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~s~   88 (128)
T PHA00733         26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSSVS   88 (128)
T ss_pred             HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCHHH
Confidence            3444444444557899999999999998888777  22221          1125789999999       999999999


Q ss_pred             hhhhhccccCCcccccccCCccccccccccccccc-cC
Q 008724          146 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG  182 (556)
Q Consensus       146 L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~g  182 (556)
                      |..|++.|  +++|.|.+|++.|.....|.+|++. |+
T Consensus        89 L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         89 LKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            99999987  4679999999999999999999987 64

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.75  E-value=1.8e-09  Score=111.60  Aligned_cols=152  Identities=16%  Similarity=0.195  Sum_probs=113.4

Q ss_pred             CCCCCCCCCCCCCCchhhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhh------------------c-
Q 008724           53 SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK------------------Q-  113 (556)
Q Consensus        53 ~k~~~~~p~~~~~~~~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~------------------~-  113 (556)
                      ....+.++...+.|.-.++.|+-...-..-|+|++|+|+|.+..+|..|+|+|.-..+..                  + 
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            344566777778888888888888777788999999999999999999999996111100                  0 


Q ss_pred             -ccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC---c--------------------------------
Q 008724          114 -RTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE---K--------------------------------  157 (556)
Q Consensus       114 -~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e---k--------------------------------  157 (556)
                       +.........|.|.+|       +|.|.+...|++|..+|+..   +                                
T Consensus       346 ~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g  418 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHG  418 (500)
T ss_pred             cccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccc
Confidence             0001123347999999       99999999999998887621   0                                


Q ss_pred             -----------ccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          158 -----------KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       158 -----------py~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                                 ...|++|+-.+..+..--.|.|. +.+.-|.|. |.-.|.....|.+|+..||...
T Consensus       419 ~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse  485 (500)
T KOG3993|consen  419 DEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSE  485 (500)
T ss_pred             cceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChHH
Confidence                       12356666666666666666666 666779999 9999999999999999988433

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.51  E-value=1.2e-07  Score=104.08  Aligned_cols=115  Identities=18%  Similarity=0.345  Sum_probs=87.8

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCC-Cc-----hhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNL-PW-----KLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~-p~-----~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      .-.|..|.+... ..+|..|...... ..     .|.....+...++.+.|+.|       ++.|. ...|..|++.|+ 
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC-
Confidence            457999988654 5677888755431 11     24444444456677899999       88886 678999999986 


Q ss_pred             CcccccccCCccccccccccccccc-cCCcceecc-CCCccCC----------hhHHHHHHhhhhc
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR----------RDSFITHRAFCDV  209 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~----------~~~L~~H~~~h~~  209 (556)
                       ++|.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|..          ...|..|...|..
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~  539 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGS  539 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCC
Confidence             889999 99866 66899999998 899999999 9999952          3579999988753

>PHA02768 hypothetical protein; Provisional

Probab=98.35  E-value=2.6e-07  Score=70.30  Aligned_cols=45  Identities=18%  Similarity=0.261  Sum_probs=40.0

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhh
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK  148 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~  148 (556)
                      .|+|++|||.|.+..+|..|+++|.               ++|+|..|       ++.|...+.|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeEE
Confidence            5899999999999999999999996               68899988       899988877653

>PHA02768 hypothetical protein; Provisional

Probab=98.34  E-value=1.6e-07  Score=71.40  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             eeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCcccccccccc
Q 008724          124 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK  175 (556)
Q Consensus       124 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~  175 (556)
                      |.|++|       ++.|.....|.+|+++|+  ++|+|..|+|.|.+.+.|.
T Consensus         6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            677777       777777777777777777  5777777777777766664

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.18  E-value=2.5e-07  Score=96.03  Aligned_cols=82  Identities=20%  Similarity=0.462  Sum_probs=68.2

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccccCCc------------------
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTR------------------  184 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gek------------------  184 (556)
                      .|.|..|       ...|.+.-.|.+|....--.-.|+|.+|+|.|.-..+|..|+|+|..|                  
T Consensus       267 dyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  267 DYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             HHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence            4899998       788888889999986443334599999999999999999999986321                  


Q ss_pred             ----------------ceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          185 ----------------EYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       185 ----------------py~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                                      .|.|. |+|.|.+...|++|+.+|+...
T Consensus       340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                            28999 9999999999999999987544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.15  E-value=5.3e-07  Score=58.46  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=23.2

Q ss_pred             chhhhhccccCCcccccccCCccccc
Q 008724          145 GIKKHFSRKHGEKKWKCEKCSKKYAV  170 (556)
Q Consensus       145 ~L~~H~r~H~~ekpy~C~~Cgk~F~~  170 (556)
                      +|.+|+++|+++|||.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999863

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.83  E-value=8.6e-06  Score=81.97  Aligned_cols=28  Identities=29%  Similarity=0.631  Sum_probs=24.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhcc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      .+|||+|++-+|     .|.|+....|+.|+.-
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lh  373 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLH  373 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhc
Confidence            568999999888     8999999999998764

>PHA00616 hypothetical protein

Probab=97.53  E-value=3.1e-05  Score=56.28  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +|+|..||+.|..+..|.+|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            5899999999999999999999998             888888864

>PHA00732 hypothetical protein

Probab=97.51  E-value=8.1e-05  Score=61.58  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=15.4

Q ss_pred             ccccCCCCCccCChHHHHHHHHh
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRG  104 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~  104 (556)
                      +|.|+.|++.|.....|+.|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhc
Confidence            36677777777777777777664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.40  E-value=0.00022  Score=72.09  Aligned_cols=74  Identities=24%  Similarity=0.526  Sum_probs=45.8

Q ss_pred             CCCCccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724           78 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus        78 ~~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      ..+|+|+|++  |.|.|+....|+.|+.--+.            ..+...-+..     +.-..|            -..
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~------------~~~~~~~p~p-----~~~~~F------------~~~  395 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQ------------NQKLHENPSP-----EKMNIF------------SAK  395 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhhcccc------------CcccCCCCCc-----cccccc------------ccc
Confidence            3469999987  99999999999999643220            1111111111     001222            223


Q ss_pred             CcccccccCCccccccccccccccc
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .|||+|++|+|+|+....|+-|++.
T Consensus       396 ~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         396 DKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             CCceeccccchhhccCccceecccc
Confidence            5778888888887777777777654

>PHA00732 hypothetical protein

Probab=97.37  E-value=9e-05  Score=61.33  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=36.9

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhcc-ccCCcccccccCCccccccccccccccc
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      +|.|..|       ++.|.....|..|++. |.   ++.|+.|++.|.   .|..|+++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            4788888       8999999999999985 54   368999999997   57888866

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.29  E-value=0.00022  Score=54.56  Aligned_cols=52  Identities=25%  Similarity=0.448  Sum_probs=35.5

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      .|.|++|++ ..+...|..|....+..           ..+.+.|++|       ...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~-----------~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRS-----------ESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcC-----------CCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            588999999 45567899996654411           3456888888       55433  37888877655

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.22  E-value=0.00016  Score=45.09  Aligned_cols=23  Identities=43%  Similarity=0.902  Sum_probs=21.6

Q ss_pred             cccCCCCCccCChHHHHHHHHhc
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      |+|++|++.|.+...|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.19  E-value=0.00018  Score=46.58  Aligned_cols=25  Identities=36%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             HHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCccc
Q 008724           97 NLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALG  141 (556)
Q Consensus        97 ~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~  141 (556)
                      +|.+|+++|.             ++++|.|++|       ++.|.
T Consensus         1 ~l~~H~~~H~-------------~~k~~~C~~C-------~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHT-------------GEKPYKCPYC-------GKSFS   25 (26)
T ss_dssp             HHHHHHHHHS-------------SSSSEEESSS-------SEEES
T ss_pred             CHHHHhhhcC-------------CCCCCCCCCC-------cCeeC
Confidence            5899999998             9999999999       88885

...

>PHA00616 hypothetical protein

Probab=97.13  E-value=6.8e-05  Score=54.51  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=26.6

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  164 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~C  164 (556)
                      +|+|+.|       |+.|..+..|.+|++.|++++++.|+.-
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            4677777       7788888888888888888877777654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.75  E-value=0.00086  Score=41.73  Aligned_cols=22  Identities=41%  Similarity=0.803  Sum_probs=16.6

Q ss_pred             eecc-CCCccCChhHHHHHHhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |+|. |++.|.++..|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            6777 888888888888887763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.73  E-value=0.001  Score=41.28  Aligned_cols=24  Identities=42%  Similarity=0.899  Sum_probs=20.2

Q ss_pred             cccCCCCCccCChHHHHHHHHhcC
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |.|++|++.|.....|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998764

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.62  E-value=0.00084  Score=51.37  Aligned_cols=47  Identities=19%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             eeCCCCCcccCCCCCcccCccchhhhhcc-ccCC-cccccccCCccccccccccccccc
Q 008724          124 YVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGE-KKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       124 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~~e-kpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.|++|       ++ ..+...|..|... |..+ +.+.|++|...+.  .+|.+|++.
T Consensus         3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            556665       55 2334456666543 2222 3456666655433  255555444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0011  Score=74.26  Aligned_cols=24  Identities=33%  Similarity=0.750  Sum_probs=16.9

Q ss_pred             cccCCCCCcc---------------CChHHHHHHHHhcC
Q 008724           83 FLCEICNKGF---------------QRDQNLQLHRRGHN  106 (556)
Q Consensus        83 y~C~~Cgk~F---------------~~~~~L~~H~r~H~  106 (556)
                      +.|.+|++.|               .....|+.|++..+
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H  138 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH  138 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh
Confidence            6677777666               36788999985544

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.38  E-value=0.0019  Score=41.87  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=23.4

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|+|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999998885

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.34  E-value=0.0023  Score=54.32  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=21.6

Q ss_pred             eCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccccCCcceecc-CCCccCChhHHHHH
Q 008724          125 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITH  203 (556)
Q Consensus       125 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H  203 (556)
                      .|..|       +..|.....|..|+...|+...-    ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            36666       89999999999999877653211    11222344445555544333479999 99999999999999


Q ss_pred             Hhhhh
Q 008724          204 RAFCD  208 (556)
Q Consensus       204 ~~~h~  208 (556)
                      ++.++
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            99754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.23  E-value=0.0011  Score=56.28  Aligned_cols=72  Identities=18%  Similarity=0.421  Sum_probs=18.2

Q ss_pred             ccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCccccccc
Q 008724           84 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  163 (556)
Q Consensus        84 ~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~  163 (556)
                      +|.+|+..|.....|..|+...+.             -   ....        ...+.....+..+.+... ...|.|.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~-------------~---~~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHG-------------F---DIPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Cccccccccccccccccccccccc-------------c---cccc--------cccccccccccccccccc-CCCCCCCc
Confidence            599999999999999999865541             0   1110        111222233333333221 22578888


Q ss_pred             CCccccccccccccccc
Q 008724          164 CSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       164 Cgk~F~~~s~L~~H~r~  180 (556)
                      |++.|.....|..|++.
T Consensus        56 C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SS-EESSHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHcC
Confidence            88888888888888876

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.19  E-value=0.0035  Score=38.77  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=15.9

Q ss_pred             eecc-CCCccCChhHHHHHHhhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |.|+ |++.|.+...|.+|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            5777 8888888888888877664

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.05  E-value=0.0033  Score=40.65  Aligned_cols=24  Identities=33%  Similarity=0.704  Sum_probs=18.6

Q ss_pred             ceecc-CCCccCChhHHHHHHhhhh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      +|.|. |++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            57787 8888888888888887764

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.99  E-value=0.0046  Score=73.15  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcC---CCchhhc---------ccccccCCceeeCCCCCcccCCCCCcccCccc
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHN---LPWKLKQ---------RTNKVERKKVYVCPEPTCVHHDPSRALGDLTG  145 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~---~p~~~~~---------~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~  145 (556)
                      ...|.|+|+.|+..|+....|..|+|.-+   ....|+-         ......+.++|.|..|       ...+..+.+
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C-------~~stttng~  533 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC-------NYSTTTNGN  533 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee-------eeeeecchH
Confidence            34588999999999999999999998833   1111110         1112236678889888       889999889


Q ss_pred             hhhhhcc--ccC-----------------------------------------CcccccccCCccccccccccccccc--
Q 008724          146 IKKHFSR--KHG-----------------------------------------EKKWKCEKCSKKYAVQSDWKAHSKI--  180 (556)
Q Consensus       146 L~~H~r~--H~~-----------------------------------------ekpy~C~~Cgk~F~~~s~L~~H~r~--  180 (556)
                      |.+|+..  |..                                         +-.|.|.+|++.-....+|+.||..  
T Consensus       534 LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~  613 (1406)
T KOG1146|consen  534 LSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASP  613 (1406)
T ss_pred             HHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCC
Confidence            9888763  210                                         1248899999988888899999887  


Q ss_pred             cCCcceecc-CCCccCChhHHHHHHhhh
Q 008724          181 CGTREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       181 ~gekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |-..|..|. |+-.+..-..+..+.+.+
T Consensus       614 ~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  614 SSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             CCCChHHHhhhcchhhccccccCcCCCC
Confidence            333447777 877777776666666554

>smart00355 ZnF_C2H2 zinc finger

Probab=95.60  E-value=0.0092  Score=37.33  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=22.1

Q ss_pred             cccCCCCCccCChHHHHHHHHhcC
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999998774

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.52  E-value=0.0073  Score=61.91  Aligned_cols=112  Identities=15%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             ccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcc------cCccchhhhhccc
Q 008724           82 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL------GDLTGIKKHFSRK  153 (556)
Q Consensus        82 ~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F------~~~s~L~~H~r~H  153 (556)
                      .|.|+.  |.........|+.|.+..+.               .+.|.+|-    ...+.|      -++..|..|...-
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~---------------~~~C~~C~----~nKk~F~~E~~lF~~~~Lr~H~~~G  211 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG---------------FVLCSECI----GNKKDFWNEIRLFRSSTLRDHKNGG  211 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC---------------cEEhHhhh----cCcccCccceeeeecccccccccCC
Confidence            477865  66666667789999776552               24555541    112222      2345566676543


Q ss_pred             cCCcc----cccccCCccccccccccccccccCCcceecc-CC----CccCChhHHHHHHhhhhchhc
Q 008724          154 HGEKK----WKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CG----KLFSRRDSFITHRAFCDVLAE  212 (556)
Q Consensus       154 ~~ekp----y~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cg----k~F~~~~~L~~H~~~h~~~~~  212 (556)
                      ..+.-    -.|..|.+.|...+.|.+|+|...|+-|.|+ -+    .=|.....|.+|-+.-|.++.
T Consensus       212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct  279 (493)
T COG5236         212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCT  279 (493)
T ss_pred             ccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEE
Confidence            33322    3599999999999999999998667777776 43    337888899999887665543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.43  E-value=0.034  Score=58.91  Aligned_cols=137  Identities=19%  Similarity=0.239  Sum_probs=83.3

Q ss_pred             CCCCCCchhhhcCcc--ccCCC--CccccC--CCCCccCChHHHHHHHHhcCCC--chhhc-------------------
Q 008724           61 GNPDPDAEVIALSPK--SLMAT--NRFLCE--ICNKGFQRDQNLQLHRRGHNLP--WKLKQ-------------------  113 (556)
Q Consensus        61 ~~~~~~~~~~~~~~~--~~~~~--k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p--~~~~~-------------------  113 (556)
                      .........+..+.+  .|..+  +++.|+  .|++.|.+...+..|...|...  .++..                   
T Consensus       296 ~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (467)
T COG5048         296 NISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSL  375 (467)
T ss_pred             cCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccch
Confidence            333344445556666  78888  999999  7999999999999999888721  11110                   


Q ss_pred             -ccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc--ccccccCCcccccccccccccccc-CCcceecc
Q 008724          114 -RTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYAVQSDWKAHSKIC-GTREYKCD  189 (556)
Q Consensus       114 -~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek--py~C~~Cgk~F~~~s~L~~H~r~~-gekpy~C~  189 (556)
                       ........+.+.|..-.|     .+.+.....+..|...|...+  .+.|..|.+.|.....+..|++.+ ...++.|.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (467)
T COG5048         376 QQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS  450 (467)
T ss_pred             hhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCceeec
Confidence             000011223344443333     566666777777777776655  355567888888888888887773 33444444


Q ss_pred             CCCccCChhHHHH
Q 008724          190 CGKLFSRRDSFIT  202 (556)
Q Consensus       190 Cgk~F~~~~~L~~  202 (556)
                      +-+.|.....+..
T Consensus       451 ~~~~~~~~~~~~~  463 (467)
T COG5048         451 ILKSFRRDLDLSN  463 (467)
T ss_pred             cccccchhhhhhc
Confidence            4455554444443

>PRK04860 hypothetical protein; Provisional

Probab=95.16  E-value=0.011  Score=55.69  Aligned_cols=28  Identities=18%  Similarity=0.560  Sum_probs=14.3

Q ss_pred             ccchhhhhccccCCcccccccCCccccc
Q 008724          143 LTGIKKHFSRKHGEKKWKCEKCSKKYAV  170 (556)
Q Consensus       143 ~s~L~~H~r~H~~ekpy~C~~Cgk~F~~  170 (556)
                      ...+.+|.++|.++++|+|..|++.|..
T Consensus       128 ~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        128 QLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             eCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            3444555555555555555555555443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.55  E-value=0.031  Score=59.13  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=73.2

Q ss_pred             CccccCCCCCccCChHHHHHHHH--hcCCCchhhcccccccCC--ceeeCC--CCCcccCCCCCcccCccchhhhhcccc
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTNKVERK--KVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r--~H~~p~~~~~~~~~~~~~--k~y~C~--~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      .++.|..|.+.|.....|.+|.+  .|.             .+  +++.|+  .|       ++.|.+...+..|...|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            57899999999999999999988  676             67  899998  57       899999999999999999


Q ss_pred             CCccccccc--CCcccccccccccc----cc-c-cCCcceecc---CCCccCChhHHHHHHhhh
Q 008724          155 GEKKWKCEK--CSKKYAVQSDWKAH----SK-I-CGTREYKCD---CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       155 ~ekpy~C~~--Cgk~F~~~s~L~~H----~r-~-~gekpy~C~---Cgk~F~~~~~L~~H~~~h  207 (556)
                      +.+++.|..  |.+.+.....-..+    .. . ...+.+.|.   |.+.+.+...+..|...+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH  411 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccc
Confidence            887777744  55544444331111    11 1 334445553   555555555555554443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.37  E-value=0.011  Score=44.09  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=13.8

Q ss_pred             CcccccccCCccccccccccccccc-cCCcc
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  185 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekp  185 (556)
                      +.|-.|++|+..+....+|++|+.+ |+.||
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4555566666666666666666555 55443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.24  E-value=0.023  Score=35.89  Aligned_cols=23  Identities=43%  Similarity=0.996  Sum_probs=21.2

Q ss_pred             cccCCCCCccCChHHHHHHHHhc
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      |.|++|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999998765

>smart00355 ZnF_C2H2 zinc finger

Probab=94.13  E-value=0.032  Score=34.78  Aligned_cols=22  Identities=32%  Similarity=0.842  Sum_probs=18.2

Q ss_pred             eecc-CCCccCChhHHHHHHhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |.|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            5788 888888888888888855

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.05  E-value=0.035  Score=66.02  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=54.8

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCCh
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR  197 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  197 (556)
                      ..|.|+|+.|       +..|+....|..|||..|-+-.-  .+|. .+.....+.+=... .+.++|.|. |...|..+
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            4588999999       89999999999999975433211  3332 22222222221222 677999999 99999999


Q ss_pred             hHHHHHHhhh
Q 008724          198 DSFITHRAFC  207 (556)
Q Consensus       198 ~~L~~H~~~h  207 (556)
                      ..|.+|+..+
T Consensus       532 g~LsihlqS~  541 (1406)
T KOG1146|consen  532 GNLSIHLQSD  541 (1406)
T ss_pred             hHHHHHHHHH
Confidence            9999999764

>PRK04860 hypothetical protein; Provisional

Probab=92.92  E-value=0.065  Score=50.44  Aligned_cols=39  Identities=21%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCc
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDL  143 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~  143 (556)
                      -+|.|. |++   ....+++|.++|.             ++++|.|..|       +..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------g~~~YrC~~C-------~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------GEAVYRCRRC-------GETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------CCccEECCCC-------CceeEEe
Confidence            479998 998   6678999999998             8899999999       6666543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.80  E-value=0.11  Score=39.04  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=20.9

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ..+.+-.|++|+..+....+|++|+..++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            44578899999999999999999997766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.47  E-value=0.039  Score=35.78  Aligned_cols=24  Identities=29%  Similarity=0.803  Sum_probs=20.7

Q ss_pred             ccccCCCCCccCChHHHHHHHHhc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      .|.|..|++.|.+...|..|++..
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999997653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.63  E-value=0.084  Score=59.61  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=58.1

Q ss_pred             cCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccC
Q 008724           85 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  164 (556)
Q Consensus        85 C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~C  164 (556)
                      |..|.|.|. ...|..|++.-. +  +.   ..+.+  .-.|..|       ...|-....|.+|++.++    |.|..|
T Consensus       153 f~~e~k~Yt-~~el~~h~~~gd-~--d~---~s~rG--hp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC  212 (669)
T KOG2231|consen  153 FINERKLYT-RAELNLHLMFGD-P--DD---ESCRG--HPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFC  212 (669)
T ss_pred             eeeeeeheh-HHHHHHHHhcCC-C--cc---ccccC--Cccchhh-------hhhhccHHHHHHhhccce----eheeec
Confidence            444556554 566777765432 0  00   00001  2467777       888999999999998776    667777


Q ss_pred             C------ccccccccccccccccCCcceecc---CC-CccCChhHHHHHHh
Q 008724          165 S------KKYAVQSDWKAHSKICGTREYKCD---CG-KLFSRRDSFITHRA  205 (556)
Q Consensus       165 g------k~F~~~s~L~~H~r~~gekpy~C~---Cg-k~F~~~~~L~~H~~  205 (556)
                      .      ..|....+|..|.|.   .-|.|+   |. +.|..-..+..|++
T Consensus       213 ~~~~~~neyy~~~~dLe~HfR~---~HflCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  213 DYKTGQNEYYNDYDDLEEHFRK---GHFLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             CcccccchhcccchHHHHHhhh---cCccccccccccceeeehhHHHHHHH
Confidence            4      456677788888876   225664   53 33444334444443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.46  E-value=0.095  Score=33.95  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=15.3

Q ss_pred             cccccCCccccccccccccccc
Q 008724          159 WKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       159 y~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=90.29  E-value=0.18  Score=31.77  Aligned_cols=22  Identities=36%  Similarity=0.655  Sum_probs=15.9

Q ss_pred             eecc-CCCccCChhHHHHHHhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |.|+ |++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            5677 777777777777777643

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.81  E-value=0.19  Score=31.46  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=18.5

Q ss_pred             cccCCCCCccCChHHHHHHHHhcC
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|+.|..... +..|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999888 999999998764

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.19  E-value=0.076  Score=51.05  Aligned_cols=81  Identities=21%  Similarity=0.495  Sum_probs=65.8

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-c----------CCcceec
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTREYKC  188 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~----------gekpy~C  188 (556)
                      ....|.|.+-||     -+.|.....+..|..+-|+.   .|.+|.+.|.+...|..|+.. |          |..-|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            446688999887     78898888888888765553   799999999999999999875 4          4456999


Q ss_pred             --c-CCCccCChhHHHHHHhhhh
Q 008724          189 --D-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       189 --~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                        + |+..|.+...-++|+-.-|
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhc
Confidence              4 9999999999999975443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.17  E-value=0.2  Score=51.69  Aligned_cols=86  Identities=24%  Similarity=0.498  Sum_probs=62.0

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCC---cccc------ccccccccccc-cCCcce----ec
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS---KKYA------VQSDWKAHSKI-CGTREY----KC  188 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cg---k~F~------~~s~L~~H~r~-~gekpy----~C  188 (556)
                      .|.|+.-.|     .........|+.|.+..|+.  +.|.+|-   +.|.      ++..|+.|... -.+.-|    .|
T Consensus       151 ~F~CP~skc-----~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C  223 (493)
T COG5236         151 SFKCPKSKC-----HRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC  223 (493)
T ss_pred             HhcCCchhh-----hhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence            478887655     67777788999999977653  6787774   3444      45667777766 222222    59


Q ss_pred             c-CCCccCChhHHHHHHhhhhchhcccc
Q 008724          189 D-CGKLFSRRDSFITHRAFCDVLAEESA  215 (556)
Q Consensus       189 ~-Cgk~F~~~~~L~~H~~~h~~~~~~~~  215 (556)
                      . |.+.|..-+.|.+|.+..|..+..+.
T Consensus       224 ~FC~~~FYdDDEL~~HcR~~HE~ChICD  251 (493)
T COG5236         224 IFCKIYFYDDDELRRHCRLRHEACHICD  251 (493)
T ss_pred             hhccceecChHHHHHHHHhhhhhhhhhh
Confidence            9 99999999999999998776555553

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.15  E-value=0.31  Score=30.48  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=15.3

Q ss_pred             eecc-CCCccCChhHHHHHHhhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |+|. |..... +..|.+|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            6787 887777 778888887765

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=87.35  E-value=0.2  Score=49.26  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=36.0

Q ss_pred             eCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCcccccccccccccc
Q 008724          125 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK  179 (556)
Q Consensus       125 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r  179 (556)
                      .|.+|       ++.|....-|..|++.    |.|+|.+|.|...+--.|..|..
T Consensus        12 wcwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsihcm   55 (341)
T KOG2893|consen   12 WCWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCM   55 (341)
T ss_pred             eeeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehh
Confidence            58888       9999999999988875    44999999988877778888743

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=87.17  E-value=0.52  Score=30.13  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=18.0

Q ss_pred             cccCCCCCccCChHHHHHHHHh
Q 008724           83 FLCEICNKGFQRDQNLQLHRRG  104 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~  104 (556)
                      ..|+.||+.| ....|.+|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 67889999764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.02  E-value=0.45  Score=32.36  Aligned_cols=24  Identities=29%  Similarity=0.811  Sum_probs=21.2

Q ss_pred             ccccCCCCCccCChHHHHHHHHhc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      +|.|++|++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            588999999999999999997643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=87.01  E-value=0.43  Score=30.50  Aligned_cols=20  Identities=35%  Similarity=0.961  Sum_probs=14.1

Q ss_pred             ecc-CCCccCChhHHHHHHhhh
Q 008724          187 KCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       187 ~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      .|. ||+.| ..+.|.+|++.|
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHhc
Confidence            577 77777 566777777665

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=85.47  E-value=0.38  Score=49.70  Aligned_cols=25  Identities=32%  Similarity=0.608  Sum_probs=22.4

Q ss_pred             CccccCCCCCccCChHHHHHHHHhc
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      .++.|-+|.|.|+.+..|+.|||.-
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhc
Confidence            4689999999999999999998754

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=84.69  E-value=0.56  Score=49.33  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=40.9

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhc-----------------------cc-ccccCCceeeCCCCCcccCCCC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ-----------------------RT-NKVERKKVYVCPEPTCVHHDPS  137 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~-----------------------~~-~~~~~~k~y~C~~C~C~~~~~~  137 (556)
                      -|.|.-|...|.....-+.|+++--..|-++.                       .. .....+-++.|..|       .
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c-------~   75 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEAC-------N   75 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHh-------h
Confidence            48999999999999888999765321111110                       00 11335678999999       8


Q ss_pred             CcccCccchhhhhc
Q 008724          138 RALGDLTGIKKHFS  151 (556)
Q Consensus       138 k~F~~~s~L~~H~r  151 (556)
                      +.|........|++
T Consensus        76 k~~~s~~a~~~hl~   89 (390)
T KOG2785|consen   76 KSFASPKAHENHLK   89 (390)
T ss_pred             ccccChhhHHHHHH
Confidence            88877655555543

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]

Probab=84.55  E-value=0.64  Score=54.82  Aligned_cols=7  Identities=14%  Similarity=-0.035  Sum_probs=3.2

Q ss_pred             ccccccC
Q 008724          300 LHNENQS  306 (556)
Q Consensus       300 ~~~~~~~  306 (556)
                      .+|-.+|
T Consensus      1487 ~qHmqqH 1493 (1517)
T KOG1883|consen 1487 GQHMQQH 1493 (1517)
T ss_pred             HHHHHhc
Confidence            4444444

>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]

Probab=82.32  E-value=2.2  Score=44.48  Aligned_cols=25  Identities=36%  Similarity=0.692  Sum_probs=16.9

Q ss_pred             CcccccccCCccccccccccccccc
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .|+|+|++|.++++....|+-|+..
T Consensus       396 nk~~r~~i~~~~~k~~~~l~~~~~~  420 (442)
T KOG4124|consen  396 NKPYRCEVCSKRYKNLNGLKYHRTH  420 (442)
T ss_pred             cCcccChhhhhhhccCCCCCceeeh
Confidence            4677788887777776666655443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.86  E-value=0.84  Score=45.07  Aligned_cols=42  Identities=21%  Similarity=0.540  Sum_probs=27.3

Q ss_pred             CcccccccCCccccccccccccccc-c----------CCcc-----eecc-CCCccCCh
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTRE-----YKCD-CGKLFSRR  197 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~-~----------gekp-----y~C~-Cgk~F~~~  197 (556)
                      +|.+.|++|++.|..+.-+....|. .          +..|     ..|+ ||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            3567788888888777666555543 1          2223     5799 99887755

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=80.07  E-value=0.71  Score=45.51  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             cccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhh
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKH  149 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H  149 (556)
                      -.|-+|++.|..+.-|..|++..                 .|+|.+|       .|.+-.--.|..|
T Consensus        11 pwcwycnrefddekiliqhqkak-----------------hfkchic-------hkkl~sgpglsih   53 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAK-----------------HFKCHIC-------HKKLFSGPGLSIH   53 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhc-----------------cceeeee-------hhhhccCCCceee
Confidence            35999999999999999997654                 4899998       5555455556655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	556
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-06
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	5e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 58.3 bits (142), Expect = 8e-11
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 83  FLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL 140
           F+C    CNK + +  +LQ+H R H         T +    K Y C    C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH---------TGE----KPYQCDFKDC-----ERRF 48

Query: 141 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFS 195
                +K+H  R+H G K ++C+ C +K++     K H++   G + + C    C K F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 196 RRDSFITH 203
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHS 178
           + ++C  P C     ++    L+ ++ H SRKH GEK ++C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 179 KI-CGTREYKCD-CGKLFSRRDSFITHR 204
           +   G + ++C  C + FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 27/127 (21%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C    + F+    L +H R H         T +    K + C    C      ++   L 
Sbjct: 42  CSRELRPFKAQYMLVVHMRRH---------TGE----KPHKCTFEGC-----RKSYSRLE 83

Query: 145 GIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE--YKCD---CGKLFSR 196
            +K H  R H GEK + CE   CSK ++  SD   H     + E  Y C    C K ++ 
Sbjct: 84  NLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142

Query: 197 RDSFITH 203
             S   H
Sbjct: 143 PSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 20/128 (15%)

Query: 83  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 142
              + C++ F   + L  H           +  +     K +VC           R    
Sbjct: 4   CRWDGCSQEFDSQEQLVHHIN--------SEHIHGER--KEFVCHW--GGCSRELRPFKA 51

Query: 143 LTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFS 195
              +  H  R+H GEK  KC  E C K Y+   + K H +   G + Y C    C K FS
Sbjct: 52  QYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110

Query: 196 RRDSFITH 203
                  H
Sbjct: 111 NASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 21/96 (21%)

Query: 88  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 147
           C K + R +NL+ H R H         T     +K Y+C    C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH---------TG----EKPYMCEHEGC-----SKAFSNASDRA 116

Query: 148 KHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHSKI 180
           KH +R H  EK + C+   C+K+Y   S  + H K 
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 86  EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTG 145
           E C KGF    +L  H   H               +K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-----DLRFTTKAN 89

Query: 146 IKKHFSRKHGEKKW--KC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFSRR 197
           +KKHF+R H  K     C  E C K +   +  K H         Y+C    C K FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 198 DSFITH 203
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 82  RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRA 139
           R++C    C   + ++  LQ H   H         T     +K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH---------TG----EKPFPCKEEGC-----EKG 53

Query: 140 LGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE----YKC---D 189
              L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 190 CGKLFSRRDSFITH 203
           CGK F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK 179
             +   CP   C     ++   D + ++KH    HG +   C +C K +   S  K H  
Sbjct: 2   EPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQL 55

Query: 180 I-CGTREYKC---DCGKLFSRRDSFITH 203
           +  G + ++C    CGK FS   +  TH
Sbjct: 56  VHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 29/126 (23%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
            + C K F+ +  ++ H   H                +V+VC E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 145 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFSRR 197
            +K+H    H GEK ++C  E C K++++  + + H +I  G R Y C    C K F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 198 DSFITH 203
            +  +H
Sbjct: 108 TNLKSH 113

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.0 bits (118), Expect = 9e-08
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 180
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H + 
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 181 -CGTREYKCD-CGKLFSRRDSFITHR 204
             G + + CD CG+ F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 88  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 147
           C++ F +  +L  H R H         T +    K + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIH---------TGQ----KPFQCRI--C-----MRNFSRSDHLT 51

Query: 148 KHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 180
            H  R H GEK + C+ C +K+A   + K H+KI
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 49/124 (39%)

Query: 83  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 142
           F C IC + F R  +L  H R H                                     
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH------------------------------------- 26

Query: 143 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFI 201
            TG          EK + C+ C +K+A   + K H  I        D   +L S+     
Sbjct: 27  -TG----------EKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLE 75

Query: 202 THRA 205
              A
Sbjct: 76  NEVA 79

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKIC---GTREYKC-DCGKLFSRRDSFITHR 204
               GE  ++C+ CS+ Y   S++  H         + Y C  C K F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 113 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYA 169
                +E+++++ C  P C     ++     + +K H  R H GEK +KC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 170 VQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHR 204
              +   H +   G + ++C  C + FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 83  FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL 140
             C+   C K + +  +L+ H R H               +K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-----DWRF 57

Query: 141 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 180
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRA 205
                    KC +CS   + ++  + H +I C  R +KC+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 35/252 (13%), Positives = 71/252 (28%), Gaps = 68/252 (26%)

Query: 66  DAEV--IALSPKSLMATNRFLCEICNKG---FQR--DQNLQLHRRGHNLPW---KLKQRT 115
             E+  I +S  ++  T R    + +K     Q+  ++ L++     N  +    +K   
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-----NYKFLMSPIKTEQ 102

Query: 116 NKVERK-KVYV-CPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSD 173
            +     ++Y+   +    ++D           K + SR   +   K  +     A+   
Sbjct: 103 RQPSMMTRMYIEQRDRL--YNDNQVF------AKYNVSRL--QPYLKLRQ-----ALLEL 147

Query: 174 WKAHSKIC-----GTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQ 228
            +    +      G        GK                 +A +   +  V        
Sbjct: 148 -RPAKNVLIDGVLG-------SGK---------------TWVALDVCLSYKV-------- 176

Query: 229 QQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQ 288
           Q         LN  + +  +   + LQ L  Q      +   H     L   S      +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 289 LFSGNIFSRSLL 300
           L     +   LL
Sbjct: 237 LLKSKPYENCLL 248

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 83  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPS-RALG 141
              + C++ F     L  H                   +  +VC    C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 142 DLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLF 194
            L     H  R H GEK + C    C K +A   + K H +   G + +KC    C + F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 195 SRRDSFITH 203
           +       H
Sbjct: 133 ANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 23/109 (21%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C    K F+    L  H R H         T +    K + CP P C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH---------TGE----KPFPCPFPGC-----GKIFARSE 106

Query: 145 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKCD 189
            +K H  R H GEK +KC  E C +++A  SD K H  +    +     
Sbjct: 107 NLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 155 GEKKWKCEKCSKKYAVQSDWKAHSKI----CGTREYKCD-CGKLFSRRDSFITHR 204
           G    +CE C      ++    H +          + C+ CGK F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 83  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 142
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 143 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI 180
                   +      ++ CE C K++       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 145 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFI 201
           G     S  H GEK + C +C K ++  S    H ++  G + YKC +CGK FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 202 THR 204
            H+
Sbjct: 60  NHQ 62

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 44/133 (33%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C  C K F   ++L  H+R H               +K Y CPE  C             
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPE--C------------- 83

Query: 145 GIKKHFSRK-----H-----GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKC-DCG 191
              K FS++     H     GEK + C +C K ++  +  +AH +   T E  YKC +CG
Sbjct: 84  --GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECG 140

Query: 192 KLFSRRDSFITHR 204
           K FSR D+  TH+
Sbjct: 141 KSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 42/131 (32%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C  C K F +  NL+ H+R H               +K Y CPE  C             
Sbjct: 80  CPECGKSFSQRANLRAHQRTHT-------------GEKPYACPE--C------------- 111

Query: 145 GIKKHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGK 192
           G  K FS+          H GEK +KC +C K ++ + +   H +   G + YKC +CGK
Sbjct: 112 G--KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169

Query: 193 LFSRRDSFITH 203
            FSRRD+   H
Sbjct: 170 SFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 26/123 (21%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C  C K F R  +L  H+R H         T     +K Y CPE  C      ++  D  
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH---------T----GEKPYKCPE--C-----GKSFSDKK 63

Query: 145 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKC-DCGKLFSRRDSF 200
            + +H  R H GEK +KC +C K ++ +++ +AH +   T E  Y C +CGK FS+    
Sbjct: 64  DLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHL 121

Query: 201 ITH 203
             H
Sbjct: 122 RAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 204
               GEK + C +C K ++       H +   G + YKC +CGK FS +     H+
Sbjct: 14  ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 204
                +K +KC++C   +  + +  +H  +  G + Y+C  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 148 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 195
           K FSRK         H G K +KC+ C    A  S    H +I    R +KC  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 196 RRDSFITHR 204
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 204
                KCE C K ++ +   K H +   G + YKC  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
            +    +++KC++C K ++  SD   H +   G + YKC +CGK F +R   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
             H   + + C+ C K++  +SD K H+ I  G + +KC  CGK FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 45/134 (33%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C  C+K F     L++H R H               +K + CP+  C         G   
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C---------G--- 42

Query: 145 GIKKHFSRK-----H--------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-D 189
              K + RK     H         E+ + C  C + +  + + + H     G   YKC  
Sbjct: 43  ---KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99

Query: 190 CGKLFSRRDSFITH 203
           C + F ++    +H
Sbjct: 100 CSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
           G    +C  C KK+  +   K H++   G + ++C  CGK + R+++ + H
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 147 KKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI---CGTREYKCD-CGKLFSRRDSFI 201
                R H GEK ++C  C  ++      K H          ++ C  C  + +R+    
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 202 TH 203
            H
Sbjct: 63  VH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 19/74 (25%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C IC+  F +   +++H    +            E    + CP   C        +   +
Sbjct: 18  CYICHARFTQSGTMKMHILQKH-----------TENVAKFHCPH--C-----DTVIARKS 59

Query: 145 GIKKHFSRKH-GEK 157
            +  H  ++H    
Sbjct: 60  DLGVHLRKQHSYSG 73

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 148 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 195
           +HF++          H  E+ + C+ C K +  Q   + H  I    + +KC +CGK F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 196 RRDSFITHR 204
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 43.6 bits (104), Expect = 9e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 204
                +K++ C+ C + +    +   H +     R Y C  C K F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 20/96 (20%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
            E C K F++   L++H+  H         T     +  Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH---------TQ----QLPYECPHEGC-----DKRFSLPS 47

Query: 145 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSK 179
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSK 179
           +YVC    C      +A      +K H    H  +  ++C  E C K++++ S  K H K
Sbjct: 1   MYVCHFENC-----GKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

Query: 180 I-CGTREYKCD-CGKLFSRRDSFITHR 204
           +  G    K D C  +      ++ H 
Sbjct: 55  VHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHR 204
           ++          C K Y   S  KAH +   G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWK 175
           +R   + C    C      +     + +K H  R H GEK + C  + C  K+A   +  
Sbjct: 1   KRTATHTCDYAGC-----GKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELT 54

Query: 176 AHSKI-CGTREYKCD-CGKLFSRRDSFITHR 204
            H +   G R ++C  C + FSR D    H 
Sbjct: 55  RHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
              C K + +  +L+ H R H               +K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-----GWKFARSD 51

Query: 145 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 180
            + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 152 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-----CGTREYKC-DCGKLFSRRDSFITH 203
           R H GEK + C  C K +  +     H K           + C  CGK F+RR++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 143 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFI 201
            +G   H   +   +   C+ C  +       K H   CG R   C  CG+    +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 202 THRAFCD 208
           TH   C 
Sbjct: 60  THPEVCG 66

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
           G     CE C K +        H     G + Y C  CG  F R+D    H
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 54/126 (42%)

Query: 83  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 142
             CEIC K F+   +L  H+  H+                                    
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHS------------------------------------ 31

Query: 143 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTRE----YKC-DCGKLFSRR 197
                       GEK + C  C  ++  +     H +          Y C  CGK FSR 
Sbjct: 32  ------------GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRP 78

Query: 198 DSFITH 203
           D    H
Sbjct: 79  DHLNGH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 151 SRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
           S    G+K + C+ C K +  +S    H  +  G R Y C  CGK F  +   + H
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 148 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 195
           K F+ K         H G + + C  C KK+ ++     H KI  G + Y+C  C K F 
Sbjct: 17  KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76

Query: 196 RRDSFITH 203
            RDSF  H
Sbjct: 77  WRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 45/127 (35%)

Query: 85  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 144
           C+ C K F        H   H                + Y C    C             
Sbjct: 13  CQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGV--C------------- 43

Query: 145 GIKKHFSRKH----------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGK 192
           G  K F  KH          G K ++C  C+K++  +  +  H  +   T+ Y+     +
Sbjct: 44  G--KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQ 99

Query: 193 LFSRRDS 199
             +    
Sbjct: 100 NTTEASG 106

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 160 KCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 203
            CE C++ +A Q   K H +     + Y C  C + F+RRD  I H
Sbjct: 4   VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 155 GEKKWKC--EKCSKKYAVQSDWKAHSKICGTRE--YKCD---CGKLFSRRDSFITHR 204
           G     C    C + ++ +     H K     +  + C    CGK F+ +     H 
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 155 GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKCD-CGKLFS 195
             K + C+ C K ++       H K   T E  +KC       S
Sbjct: 9   VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 89  NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK 148
           +KG      L+  +R H L  + K+    + +  ++              +      + +
Sbjct: 17  HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIH------NPQLLDESSY-----LYR 65

Query: 149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC-DCGKLFSRRDSFITH 203
             + K    ++ C  C   ++     K H +        C  C K F+  DS + H
Sbjct: 66  LLASKAI-SQFVCPLCLMPFSSSVSLKQHIRY-TEHTKVCPVCKKEFTSTDSALDH 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	556
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.83
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.77
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.76
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.75
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.74
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.7
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.69
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.68
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.67
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.66
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.65
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.61
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.6
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.6
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.59
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.59
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.59
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.58
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.58
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.56
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.56
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.51
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.51
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.49
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.49
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.49
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.49
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.45
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.45
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.45
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.42
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.41
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.4
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.39
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.36
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.35
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.34
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.32
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.31
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.3
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.3
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.3
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.27
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.26
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.26
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.23
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.23
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.21
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.19
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.18
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.18
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.18
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.17
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.16
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.15
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.13
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.1
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.03
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.01
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.0
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.0
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.95
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.89
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.89
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.89
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.87
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.86
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.85
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.85
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.84
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.83
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.81
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.8
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.8
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.79
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.78
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.77
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.75
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.74
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.73
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.73
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.72
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.72
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.72
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.71
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.71
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.71
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.7
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.69
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.69
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.68
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.68
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.67
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.66
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.65
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.64
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.63
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.61
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.57
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.56
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.56
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.55
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.55
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.54
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.54
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.54
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.53
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.53
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.52
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.52
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.52
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.51
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.51
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.51
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.51
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.51
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.5
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.49
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.48
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.48
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.48
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.47
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.47
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.47
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.46
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.46
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.46
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.45
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.45
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.44
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.44
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.44
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.41
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.4
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.4
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.38
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.34
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.28
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.25
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.2
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.18
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.15
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.01
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.01
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.01
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.01
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.98
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.98
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.92
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.87
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.86
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.83
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.8
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.79
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.78
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.76
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.76
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.75
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.75
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.74
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.74
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.72
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.71
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.69
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.69
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.68
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.68
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.67
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.64
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.63
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.62
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.61
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.61
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.6
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.59
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.55
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.54
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.52
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.48
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.48
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.6
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.41
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.39
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.39
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.38
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.37
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.36
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.47
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.46
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.34
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.43
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.41
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.29
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.33
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.24
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.17
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.17
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.07
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.05
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.0
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.0
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.98
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	96.93
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.81
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.76
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.31
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.23
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	95.86
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.4
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.97
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.89
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.61
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.7
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.84
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	88.77
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	86.98

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=3e-21  Score=169.54  Aligned_cols=111  Identities=22%  Similarity=0.501  Sum_probs=104.4

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcc---cc
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR---KH  154 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~---H~  154 (556)
                      .++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            45788999999999999999999999998             8899999999       9999999999999985   57


Q ss_pred             CCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh
Q 008724          155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       155 ~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      ++++|.|.+|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|++..|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            88999999999999999999999999 899999999 9999999999999998655

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.83  E-value=6.2e-22  Score=187.94  Aligned_cols=149  Identities=27%  Similarity=0.567  Sum_probs=110.3

Q ss_pred             CCCCCCCCCCCCCchhhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcC--CCchhhc-------------ccccc
Q 008724           54 KKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN--LPWKLKQ-------------RTNKV  118 (556)
Q Consensus        54 k~~~~~p~~~~~~~~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~--~p~~~~~-------------~~~~~  118 (556)
                      ...+..++........+..+.+.+.++++|+|++|++.|.....|..|++.|.  +++.|..             +...+
T Consensus        21 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  100 (190)
T 2i13_A           21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH  100 (190)
T ss_dssp             ----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhc
Confidence            35566777777788888889999999999999999999999999999999886  3444432             22234


Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCC
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR  196 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~  196 (556)
                      .++++|.|++|       ++.|.....|..|++.|+++++|+|++|++.|.....|.+|+++ +++++|.|. |++.|.+
T Consensus       101 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~  173 (190)
T 2i13_A          101 TGEKPYACPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR  173 (190)
T ss_dssp             HTCCCEECTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             CCCCCCcCCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCC
Confidence            46778888887       88888888888888888888888888888888888888888888 788888888 8888888


Q ss_pred             hhHHHHHHhhhhc
Q 008724          197 RDSFITHRAFCDV  209 (556)
Q Consensus       197 ~~~L~~H~~~h~~  209 (556)
                      +..|.+|+++|+.
T Consensus       174 ~~~L~~H~~~H~~  186 (190)
T 2i13_A          174 RDALNVHQRTHTG  186 (190)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHHhcCC
Confidence            8888888888753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=2e-21  Score=169.70  Aligned_cols=110  Identities=29%  Similarity=0.692  Sum_probs=104.4

Q ss_pred             CCCCccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC--CCCcccCCCCCcccCccchhhhhccc
Q 008724           78 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRK  153 (556)
Q Consensus        78 ~~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~--~C~C~~~~~~k~F~~~s~L~~H~r~H  153 (556)
                      .++++|.|.+  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            3578999997  9999999999999999998             78999999  57       99999999999999999


Q ss_pred             cCCcccccccCCccccccccccccccc-cCCcceec--c-CCCccCChhHHHHHHhhh
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      +++++|.|++|++.|.....|.+|+++ +++++|.|  + |++.|.++..|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 89999999  7 999999999999999876

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.82  E-value=3.6e-21  Score=182.67  Aligned_cols=133  Identities=29%  Similarity=0.594  Sum_probs=95.6

Q ss_pred             hhcCccccCCCCccccCCCCCccCChHHHHHHHHhcC--CCchhhc-------------ccccccCCceeeCCCCCcccC
Q 008724           70 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN--LPWKLKQ-------------RTNKVERKKVYVCPEPTCVHH  134 (556)
Q Consensus        70 ~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~--~p~~~~~-------------~~~~~~~~k~y~C~~C~C~~~  134 (556)
                      +..+...+.++++|.|++|++.|.....|..|++.|.  +++.|..             +...+.++++|.|+.|     
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C-----   83 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC-----   83 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTT-----
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCccc-----
Confidence            3345556778899999999999999999999999997  4555542             2233457788999988     


Q ss_pred             CCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          135 DPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       135 ~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                        ++.|.....|..|++.|+++++|.|++|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|+++|..
T Consensus        84 --~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           84 --GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             --CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             --CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence              89999999999999999999999999999999999999999999 789999999 99999999999999998863

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=1.5e-21  Score=176.51  Aligned_cols=107  Identities=20%  Similarity=0.341  Sum_probs=98.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcc
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      +...+.++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHHHHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhhhccc
Confidence            4456788999999999999999999999999998             8899999999       9999999999999999


Q ss_pred             ccCCcccccccCCccccccccccccccc-cCC------cceecc-CCCccCChhH
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT------REYKCD-CGKLFSRRDS  199 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~ge------kpy~C~-Cgk~F~~~~~  199 (556)
                      |+++++|.|++|++.|.....|.+|+++ |++      ++|+|. |++.|.+...
T Consensus        73 H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             cCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            9999999999999999999999999999 766      459999 9999987654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=4.6e-20  Score=162.52  Aligned_cols=110  Identities=27%  Similarity=0.583  Sum_probs=101.2

Q ss_pred             CCCccccC--CCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724           79 ATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        79 ~~k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ..++|.|+  .|++.|.+...|..|+++|              ++++|.|.+|       ++.|.....|..|++.|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            45789999  8999999999999999988              4688999999       99999999999999999999


Q ss_pred             ccccccc--CCccccccccccccccc-cCCcceec--c-CCCccCChhHHHHHHhhhhc
Q 008724          157 KKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       157 kpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      ++|.|.+  |++.|.....|.+|+++ +++++|.|  + |++.|.++..|.+|+++|..
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            9999986  99999999999999999 89999999  6 99999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.6e-19  Score=163.69  Aligned_cols=131  Identities=23%  Similarity=0.389  Sum_probs=109.5

Q ss_pred             CCCCCCCCCchhhhcCcc---ccCCCCccccCCC-----CCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC-
Q 008724           58 SLPGNPDPDAEVIALSPK---SLMATNRFLCEIC-----NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE-  128 (556)
Q Consensus        58 ~~p~~~~~~~~~~~~~~~---~~~~~k~y~C~~C-----gk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~-  128 (556)
                      ...+........+..+.+   .+.++++|.|++|     ++.|.....|..|++.|.             ++++|.|++ 
T Consensus         7 ~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~   73 (155)
T 2gli_A            7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPHKCTFE   73 (155)
T ss_dssp             TTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCCCCCST
T ss_pred             CCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            344555555666666665   5677788887643     488888888888888887             788999986 


Q ss_pred             -CCcccCCCCCcccCccchhhhhccccCCccccccc--CCccccccccccccc-cc-cCCcceecc---CCCccCChhHH
Q 008724          129 -PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS-KI-CGTREYKCD---CGKLFSRRDSF  200 (556)
Q Consensus       129 -C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~-r~-~gekpy~C~---Cgk~F~~~~~L  200 (556)
                       |       ++.|.....|..|++.|+++++|.|++  |++.|.....|.+|+ ++ .++++|.|.   |++.|.++..|
T Consensus        74 ~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           74 GC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             TC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHH
T ss_pred             CC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHH
Confidence             6       999999999999999999999999998  999999999999998 66 688999994   99999999999


Q ss_pred             HHHHhhhh
Q 008724          201 ITHRAFCD  208 (556)
Q Consensus       201 ~~H~~~h~  208 (556)
                      .+|+++|+
T Consensus       147 ~~H~~~hh  154 (155)
T 2gli_A          147 RKHVKTVH  154 (155)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhc
Confidence            99999876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.76  E-value=3.5e-19  Score=168.85  Aligned_cols=136  Identities=22%  Similarity=0.334  Sum_probs=118.0

Q ss_pred             CCCC--CCCCCCCCCchhhhcCccccCCCCcccc--CCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC--
Q 008724           54 KKKR--SLPGNPDPDAEVIALSPKSLMATNRFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP--  127 (556)
Q Consensus        54 k~~~--~~p~~~~~~~~~~~~~~~~~~~~k~y~C--~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~--  127 (556)
                      ...+  ..++........+..+.+.|.++++|.|  ++|++.|.....|..|+++|.             ++++|.|.  
T Consensus        12 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~   78 (190)
T 1tf6_A           12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSD   78 (190)
T ss_dssp             CCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEECCSS
T ss_pred             ceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCceeCCCC
Confidence            3444  4577777788888889999999999999  889999999999999999998             78899998  


Q ss_pred             CCCcccCCCCCcccCccchhhhh-ccc-cCCccccc--ccCCccccccccccccccc-cCCcceec--c-CCCccCChhH
Q 008724          128 EPTCVHHDPSRALGDLTGIKKHF-SRK-HGEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDS  199 (556)
Q Consensus       128 ~C~C~~~~~~k~F~~~s~L~~H~-r~H-~~ekpy~C--~~Cgk~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~  199 (556)
                      .|       ++.|.....|.+|+ +.| .++++|.|  ++|++.|.....|.+|+++ +++++|.|  + |++.|.++..
T Consensus        79 ~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~  151 (190)
T 1tf6_A           79 GC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSR  151 (190)
T ss_dssp             SC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHH
T ss_pred             CC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHH
Confidence            66       89999999999999 566 36788999  8899999999999999998 78899999  4 9999999999


Q ss_pred             HHHHHhhhhc
Q 008724          200 FITHRAFCDV  209 (556)
Q Consensus       200 L~~H~~~h~~  209 (556)
                      |.+|+++|..
T Consensus       152 L~~H~~~H~~  161 (190)
T 1tf6_A          152 LKRHEKVHAG  161 (190)
T ss_dssp             HHHHHTSSCS
T ss_pred             HHHHHHHhCC
Confidence            9999998864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.75  E-value=4.9e-19  Score=162.20  Aligned_cols=119  Identities=20%  Similarity=0.341  Sum_probs=101.9

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHh-cCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~-H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      ....|.|.+|++.|.+...|..|++. |.....     ........|.|.+|       ++.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~-----~~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE-----QNNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTT-----CSSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcc-----cCCccccccCCCCc-------ccccCCHHHHHHHHHhcCCCC
Confidence            45789999999999999999999998 541100     00001123788888       999999999999999999999


Q ss_pred             cccccc--CCccccccccccccccc-cCCcceecc---CCCccCChhHHHHHHhhhhc
Q 008724          158 KWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       158 py~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C~---Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      +|.|.+  |++.|.....|.+|+++ +++++|.|.   |++.|.++..|.+|+++|+.
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  147 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS  147 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTS
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            999998  99999999999999999 889999997   99999999999999998863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.1e-18  Score=159.38  Aligned_cols=114  Identities=26%  Similarity=0.486  Sum_probs=103.8

Q ss_pred             CCccccCCCCCccCChHHHHHHHH---hcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRR---GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r---~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +.+|.|+.|++.|.+...|..|++   +|.             ++++|.|++|+|  ..|++.|.....|.+|++.|+++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-------------~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~~   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG-------------ERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS-------------CSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC-------------CCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCCC
Confidence            357999999999999999999998   455             789999998865  45579999999999999999999


Q ss_pred             ccccccc--CCccccccccccccccc-cCCcceecc---CCCccCChhHHHHHH-hhhh
Q 008724          157 KKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHR-AFCD  208 (556)
Q Consensus       157 kpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C~---Cgk~F~~~~~L~~H~-~~h~  208 (556)
                      ++|.|.+  |++.|.....|.+|+++ +++++|.|.   |++.|.+...|.+|+ ++|.
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            9999985  99999999999999999 789999997   999999999999999 6664

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.70  E-value=1.3e-17  Score=158.08  Aligned_cols=133  Identities=22%  Similarity=0.390  Sum_probs=118.9

Q ss_pred             CCC--CCCCCCCCCchhhhcCccccCCCCccccC--CCCCccCChHHHHHHH-HhcCCCchhhcccccccCCceeeC--C
Q 008724           55 KKR--SLPGNPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKVERKKVYVC--P  127 (556)
Q Consensus        55 ~~~--~~p~~~~~~~~~~~~~~~~~~~~k~y~C~--~Cgk~F~~~~~L~~H~-r~H~~p~~~~~~~~~~~~~k~y~C--~  127 (556)
                      ..+  ..++........+..+.+.|.++++|.|+  .|++.|.....|..|+ +.|.            .++++|.|  +
T Consensus        43 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~------------~~~~~~~C~~~  110 (190)
T 1tf6_A           43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN------------IKICVYVCHFE  110 (190)
T ss_dssp             SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSS------------TTTSCCEECSS
T ss_pred             ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcC------------CCcceeeCCCC
Confidence            445  56777788888899999999999999999  8999999999999998 6663            15789999  8


Q ss_pred             CCCcccCCCCCcccCccchhhhhccccCCccccccc--CCccccccccccccccccCCcceecc----CCCccCChhHHH
Q 008724          128 EPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKICGTREYKCD----CGKLFSRRDSFI  201 (556)
Q Consensus       128 ~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~~gekpy~C~----Cgk~F~~~~~L~  201 (556)
                      .|       ++.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++|..  |.|.    |++.|.+...|.
T Consensus       111 ~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--~~C~~~~~C~~~f~~~~~l~  181 (190)
T 1tf6_A          111 NC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL  181 (190)
T ss_dssp             SS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--CCCCSTTTCCCCCSCHHHHH
T ss_pred             CC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC--CcCCCCCcCCCccccHHHHH
Confidence            88       999999999999999999999999988  99999999999999999433  7773    999999999999


Q ss_pred             HHHhhhh
Q 008724          202 THRAFCD  208 (556)
Q Consensus       202 ~H~~~h~  208 (556)
                      +|+++|+
T Consensus       182 ~H~~~h~  188 (190)
T 1tf6_A          182 KHVAECH  188 (190)
T ss_dssp             HHHTTCC
T ss_pred             HHHHhhc
Confidence            9999886

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.69  E-value=1.9e-17  Score=141.81  Aligned_cols=90  Identities=23%  Similarity=0.538  Sum_probs=83.5

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcc
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKK  158 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekp  158 (556)
                      .+++|.|.+|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|.+|++.|+++++
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   73 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEKP   73 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCCT
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCCC
Confidence            4578999999999999999999999998             7899999999       9999999999999999999999


Q ss_pred             cccccCCccccccccccccccc-cCCcceec
Q 008724          159 WKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       159 y~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      |+|.+|++.|.....|.+|+++ +++++|.+
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             eECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999999999999999999999 78888764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.68  E-value=4.2e-17  Score=149.26  Aligned_cols=119  Identities=20%  Similarity=0.298  Sum_probs=107.2

Q ss_pred             CCCCCCCCCCCCCCCCchhhhcCccc-cCCCCc--------cccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCC
Q 008724           51 PPSKKKRSLPGNPDPDAEVIALSPKS-LMATNR--------FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERK  121 (556)
Q Consensus        51 ~~~k~~~~~p~~~~~~~~~~~~~~~~-~~~~k~--------y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~  121 (556)
                      .....++..++........+..|.+. |..+++        |.|.+|++.|.....|..|+++|.             ++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~   88 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GE   88 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------CC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------CC
Confidence            44567777888888888888888776 666554        899999999999999999999998             88


Q ss_pred             ceeeCCC--CCcccCCCCCcccCccchhhhhccccCCccccccc--CCccccccccccccccc-cCCcceecc
Q 008724          122 KVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       122 k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      ++|.|.+  |       ++.|.....|.+|+++|+++++|+|.+  |++.|..+..|.+|+++ +++++|.|.
T Consensus        89 ~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           89 KPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999998  7       999999999999999999999999997  99999999999999999 899999984

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.67  E-value=4.2e-18  Score=153.83  Aligned_cols=85  Identities=27%  Similarity=0.503  Sum_probs=81.6

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCC
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR  196 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~  196 (556)
                      .|+++|.|++|       ++.|.....|.+|+++|+++++|+|++|++.|.....|.+|+++ .+++||.|+ |++.|.+
T Consensus        18 ~Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           18 DGRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             TTEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred             CCCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence            49999999999       99999999999999999999999999999999999999999999 799999999 9999999


Q ss_pred             hhHHHHHHhhhhch
Q 008724          197 RDSFITHRAFCDVL  210 (556)
Q Consensus       197 ~~~L~~H~~~h~~~  210 (556)
                      +..|.+|++.|+..
T Consensus        91 ~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQ  104 (133)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHhHHhcCC
Confidence            99999999998743

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=4.3e-17  Score=136.86  Aligned_cols=88  Identities=27%  Similarity=0.496  Sum_probs=68.3

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      .++++|+|.+|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|.+|++.|++++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   63 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDER   63 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCC
Confidence            45677888888888888888888888776             6677888877       778888888888888888777


Q ss_pred             ccccccCCccccccccccccccc-cCCcc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI-CGTRE  185 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~-~gekp  185 (556)
                      +|+|.+|++.|.....|.+|+++ +++++
T Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           64 PFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            88888888888877777777777 55544

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=9.3e-17  Score=139.65  Aligned_cols=91  Identities=15%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             hhcCccccCCCCccccCCCCCccCChHHHHHHHHh--cCCCchhhcccccccCCcee-eCCCCCcccCCCCCcc--cCcc
Q 008724           70 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRTNKVERKKVY-VCPEPTCVHHDPSRAL--GDLT  144 (556)
Q Consensus        70 ~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~--H~~p~~~~~~~~~~~~~k~y-~C~~C~C~~~~~~k~F--~~~s  144 (556)
                      +..+.+.|.++++|+|++|++.|.....|..|+++  |.             ..+++ .|.+|       ++.|  ....
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~~~~   66 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKPRKR   66 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSCCCC
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------CcccccccHH
Confidence            44455566666667777777777777777777665  33             33332 35555       4444  5555


Q ss_pred             chhhhhccccCCcccccccCCccccccccccccccc
Q 008724          145 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       145 ~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .|.+|+++|+++++|+|++|++.|..+..|.+|+++
T Consensus        67 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             CCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHH
Confidence            566666555555555555555555555555555555

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=5.7e-17  Score=139.44  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=84.4

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccc
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  153 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  153 (556)
                      .+.+.++++|+|++|++.|.....|..|+++|.               ++|.|.+|       ++.|.....|.+|++ |
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~-H   64 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES-K   64 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH-H
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH-c
Confidence            456778899999999999999999999999884               57999999       999999999999996 9


Q ss_pred             cCCcccccccCCcccccccccccccc-c-cCCcceecc
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYKCD  189 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r-~-~gekpy~C~  189 (556)
                      +++++|+|++|++.|..+..|.+|++ + .++++|.|.
T Consensus        65 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             CSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999998 5 678888874

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.7e-17  Score=142.21  Aligned_cols=96  Identities=14%  Similarity=0.194  Sum_probs=86.2

Q ss_pred             HHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcc--ccCCcccc-cccCCccc--cc
Q 008724           96 QNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR--KHGEKKWK-CEKCSKKY--AV  170 (556)
Q Consensus        96 ~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~--H~~ekpy~-C~~Cgk~F--~~  170 (556)
                      ..|+.|+++|.             ++++|.|.+|       ++.|.....|..|++.  |.+++++. |.+|++.|  ..
T Consensus         5 ~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~   64 (115)
T 2dmi_A            5 SSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR   64 (115)
T ss_dssp             CCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCC
T ss_pred             hhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCccccccc
Confidence            45677777777             8999999999       9999999999999998  87777655 99999999  99


Q ss_pred             cccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          171 QSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       171 ~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                      ...|.+|+++ +++++|.|. |++.|.++..|.+|++.|+...
T Consensus        65 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            9999999999 789999999 9999999999999999987543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.8e-16  Score=136.77  Aligned_cols=88  Identities=30%  Similarity=0.606  Sum_probs=82.3

Q ss_pred             ccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccC
Q 008724          118 VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFS  195 (556)
Q Consensus       118 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~  195 (556)
                      +.++++|.| .|       ++.|.....|.+|++.|+++++|+|.+|++.|.....|.+|+++ +++++|+|. |++.|.
T Consensus         5 h~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            5 SSGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred             CCCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence            348899999 88       99999999999999999999999999999999999999999999 799999999 999999


Q ss_pred             ChhHHHHHHhhhhchhcc
Q 008724          196 RRDSFITHRAFCDVLAEE  213 (556)
Q Consensus       196 ~~~~L~~H~~~h~~~~~~  213 (556)
                      ++..|.+|++.|+.....
T Consensus        77 ~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           77 WRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHccccccc
Confidence            999999999999865443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=2.9e-16  Score=131.47  Aligned_cols=81  Identities=26%  Similarity=0.527  Sum_probs=50.7

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC--
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE--  156 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e--  156 (556)
                      ++++|+|.+|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|++.|+++  
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   63 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVG   63 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCCC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCCC
Confidence            4456666666666666666666666665             5566666666       66666666666666666654  


Q ss_pred             cccccccCCcccccccccccccc
Q 008724          157 KKWKCEKCSKKYAVQSDWKAHSK  179 (556)
Q Consensus       157 kpy~C~~Cgk~F~~~s~L~~H~r  179 (556)
                      ++|+|.+|++.|.+...|.+|++
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            55666666666666666666654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.60  E-value=1.5e-16  Score=131.70  Aligned_cols=81  Identities=27%  Similarity=0.582  Sum_probs=51.1

Q ss_pred             CCccccC--CCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           80 TNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        80 ~k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      +++|.|.  .|++.|.....|..|+++|.             ++++|.|..|       ++.|.....|..|++.|++++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            3556665  46666666666666666665             5566666666       666666666666666666666


Q ss_pred             ccccccCCccccccccccccccc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      +|.|.+|++.|.....|.+|+++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKI   84 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            66666666666666666666665

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.8e-16  Score=136.76  Aligned_cols=114  Identities=18%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCCCCchhhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcc
Q 008724           53 SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCV  132 (556)
Q Consensus        53 ~k~~~~~p~~~~~~~~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~  132 (556)
                      ....+..+.........+..+.+.|.++++|.|++|++.|.....|..|++.|.          .+.++++|.|++|   
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~----------~~~~~~~~~C~~C---   72 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC----------MNRSEQVFTCSVC---   72 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC----------CCSCCCCEECSSS---
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh----------cCCCCCCeECCCC---
Confidence            345677778888888889999999999999999999999999999999998753          1127889999999   


Q ss_pred             cCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCC
Q 008724          133 HHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  183 (556)
Q Consensus       133 ~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~ge  183 (556)
                          ++.|.....|..|+++|+++++|+|.+|++.|..+..|.+|++. |..
T Consensus        73 ----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           73 ----QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             ----CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             ----CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence                99999999999999999999999999999999999999999986 643

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=2.3e-16  Score=132.38  Aligned_cols=84  Identities=20%  Similarity=0.332  Sum_probs=80.3

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCCh
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR  197 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  197 (556)
                      ++++|.|.+|       ++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++ +++++|+|. |++.|...
T Consensus         5 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A            5 SSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence            6789999999       99999999999999999999999999999999999999999999 789999999 99999999


Q ss_pred             hHHHHHHhhhhch
Q 008724          198 DSFITHRAFCDVL  210 (556)
Q Consensus       198 ~~L~~H~~~h~~~  210 (556)
                      ..|.+|+++|+..
T Consensus        78 ~~l~~H~~~h~~~   90 (96)
T 2dmd_A           78 SQLTVHLRSHTGD   90 (96)
T ss_dssp             HHHHHHHTTCCSC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999998643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.60  E-value=2.4e-16  Score=138.62  Aligned_cols=107  Identities=18%  Similarity=0.328  Sum_probs=92.9

Q ss_pred             CCCCCCCCchhhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC--CCcccCCC
Q 008724           59 LPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDP  136 (556)
Q Consensus        59 ~p~~~~~~~~~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~  136 (556)
                      .++........+..+.+.| +.++|.|++|++.|.....|..|+++|.             ++++|.|.+  |       
T Consensus        12 ~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------   70 (124)
T 1ubd_C           12 GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTFEGC-------   70 (124)
T ss_dssp             TCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCSTTC-------
T ss_pred             CCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCCCCC-------
Confidence            4555666677788888888 8899999999999999999999999998             889999986  7       


Q ss_pred             CCcccCccchhhhhccccCCcccccc--cCCccccccccccccccc-cCCcce
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREY  186 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~gekpy  186 (556)
                      ++.|.....|..|+++|+++++|.|.  .|++.|.....|.+|+++ ++++++
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            99999999999999999999999995  599999999999999999 777765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=3.8e-16  Score=134.62  Aligned_cols=85  Identities=19%  Similarity=0.416  Sum_probs=81.0

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      .|.++++|.| .|++.|.....|..|++.|.             ++++|.|.+|       ++.|.....|.+|++.|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCC
Confidence            4678899999 99999999999999999998             7899999999       9999999999999999999


Q ss_pred             CcccccccCCcccccccccccccccc
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKIC  181 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~~  181 (556)
                      +++|+|.+|++.|.....|.+|++++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            99999999999999999999999883

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.59  E-value=5e-16  Score=132.87  Aligned_cols=84  Identities=23%  Similarity=0.495  Sum_probs=80.1

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCCh
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR  197 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  197 (556)
                      .+++|.|.+|       ++.|.....|.+|++.|+++++|.|.+|++.|.....|.+|+++ +++++|+|. |++.|.+.
T Consensus        14 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           14 TKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCH
Confidence            6789999999       99999999999999999999999999999999999999999999 789999999 99999999


Q ss_pred             hHHHHHHhhhhch
Q 008724          198 DSFITHRAFCDVL  210 (556)
Q Consensus       198 ~~L~~H~~~h~~~  210 (556)
                      ..|.+|+++|...
T Consensus        87 ~~L~~H~~~H~~~   99 (106)
T 2ee8_A           87 RTLAVHKTLHMQT   99 (106)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999998643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.59  E-value=2.2e-16  Score=128.24  Aligned_cols=78  Identities=32%  Similarity=0.587  Sum_probs=45.1

Q ss_pred             cccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccc
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  162 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~  162 (556)
                      |.|++|++.|.....|..|++.|.             ++++|.|..|       ++.|.....|.+|++.|+++++|+|.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~   61 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKCQ   61 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECT
T ss_pred             ccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcCC
Confidence            556666666666666666665554             4555555555       55555555555555555555555555


Q ss_pred             cCCccccccccccccccc
Q 008724          163 KCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       163 ~Cgk~F~~~s~L~~H~r~  180 (556)
                      +|++.|.....|.+|+++
T Consensus        62 ~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           62 VCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTSCEESSHHHHHHHHHH
T ss_pred             CcchhhCChHHHHHHHHh
Confidence            555555555555555544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.58  E-value=3.8e-16  Score=129.24  Aligned_cols=83  Identities=23%  Similarity=0.594  Sum_probs=77.5

Q ss_pred             CCceeeCCC--CCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccC
Q 008724          120 RKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFS  195 (556)
Q Consensus       120 ~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~  195 (556)
                      ++++|.|++  |       ++.|.....|..|++.|+++++|.|.+|++.|.....|.+|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            367899984  7       99999999999999999999999999999999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHhhhhc
Q 008724          196 RRDSFITHRAFCDV  209 (556)
Q Consensus       196 ~~~~L~~H~~~h~~  209 (556)
                      ++..|.+|+++|..
T Consensus        74 ~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           74 RSDERKRHTKIHLR   87 (90)
T ss_dssp             SHHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.58  E-value=3.6e-16  Score=126.90  Aligned_cols=79  Identities=27%  Similarity=0.569  Sum_probs=76.1

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHH
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSF  200 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L  200 (556)
                      +|.|.+|       ++.|.....|..|++.|.++++|.|.+|++.|.....|.+|+++ +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899999       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHhhhh
Q 008724          201 ITHRAFCD  208 (556)
Q Consensus       201 ~~H~~~h~  208 (556)
                      .+|+++|.
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.56  E-value=5.4e-16  Score=134.95  Aligned_cols=102  Identities=22%  Similarity=0.457  Sum_probs=95.0

Q ss_pred             CCCCCCCchhhhcCccccCCCCccccC--CCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCC
Q 008724           60 PGNPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPS  137 (556)
Q Consensus        60 p~~~~~~~~~~~~~~~~~~~~k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~  137 (556)
                      ++........+..+.+.|.++++|.|+  .|++.|.....|..|+++|.             ++++|.|++|       +
T Consensus        14 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~   73 (119)
T 2jp9_A           14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-------------GVKPFQCKTC-------Q   73 (119)
T ss_dssp             SCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------C
T ss_pred             CcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC-------------CCCCccCCcc-------C
Confidence            666677778888888899999999999  79999999999999999998             8899999999       9


Q ss_pred             CcccCccchhhhhccccCCccccc--ccCCcccccccccccccccc
Q 008724          138 RALGDLTGIKKHFSRKHGEKKWKC--EKCSKKYAVQSDWKAHSKIC  181 (556)
Q Consensus       138 k~F~~~s~L~~H~r~H~~ekpy~C--~~Cgk~F~~~s~L~~H~r~~  181 (556)
                      +.|.....|.+|+++|+++++|+|  ++|++.|..+..|.+|+++|
T Consensus        74 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999  89999999999999999863

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.1e-15  Score=127.98  Aligned_cols=81  Identities=25%  Similarity=0.486  Sum_probs=76.8

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCC--cceecc-CCCccC
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT--REYKCD-CGKLFS  195 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~ge--kpy~C~-Cgk~F~  195 (556)
                      ++++|.|.+|       ++.|.....|.+|++.|+++++|.|.+|++.|.....|.+|+++ +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            7889999999       99999999999999999999999999999999999999999999 666  999999 999999


Q ss_pred             ChhHHHHHHhhh
Q 008724          196 RRDSFITHRAFC  207 (556)
Q Consensus       196 ~~~~L~~H~~~h  207 (556)
                      ++..|.+|++..
T Consensus        77 ~~~~L~~H~~~~   88 (95)
T 2yt9_A           77 RPDHLNGHIKQV   88 (95)
T ss_dssp             SHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHh
Confidence            999999999743

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.51  E-value=4.3e-15  Score=122.57  Aligned_cols=80  Identities=21%  Similarity=0.562  Sum_probs=47.4

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC--CCcccCCCCCcccCccchhhhhccccCC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +.|.|++  |++.|.....|..|++.|.             ++++|.|++  |       ++.|.....|.+|++.|+++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~   63 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTGH   63 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHCC
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCCC
Confidence            3466665  6666666666666666655             555566642  4       56666666666666666666


Q ss_pred             cccccccCCccccccccccccccc
Q 008724          157 KKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       157 kpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++|.|.+|++.|.....|.+|+++
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHHh
Confidence            666666666666555555555554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=7.2e-15  Score=123.90  Aligned_cols=82  Identities=21%  Similarity=0.515  Sum_probs=65.4

Q ss_pred             CCCccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC--CCcccCCCCCcccCccchhhhhcccc
Q 008724           79 ATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        79 ~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      ..+.|.|.+  |++.|.....|..|++.|.             ++++|.|.+  |       ++.|.....|.+|++.|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhC
Confidence            345688886  8888888888888888887             677888864  5       788888888888888888


Q ss_pred             CCcccccccCCccccccccccccccc
Q 008724          155 GEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       155 ~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++++|+|.+|++.|.....|.+|+++
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHH
Confidence            88888888888888888887777776

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.49  E-value=7.8e-15  Score=120.99  Aligned_cols=81  Identities=26%  Similarity=0.560  Sum_probs=76.2

Q ss_pred             CCceeeCCC--CCcccCCCCCcccCccchhhhhccccCCcccccc--cCCccccccccccccccc-cCCcceecc-CCCc
Q 008724          120 RKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKL  193 (556)
Q Consensus       120 ~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~  193 (556)
                      +.+.|.|.+  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|.+|+++ +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            357899999  7       99999999999999999999999997  599999999999999999 899999999 9999


Q ss_pred             cCChhHHHHHHhhh
Q 008724          194 FSRRDSFITHRAFC  207 (556)
Q Consensus       194 F~~~~~L~~H~~~h  207 (556)
                      |.....|.+|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.49  E-value=6e-16  Score=128.37  Aligned_cols=84  Identities=23%  Similarity=0.339  Sum_probs=78.6

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccccCCcceecc-CCCccCChhH
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDS  199 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~  199 (556)
                      +++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|.+|++++..++|.|. |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999999       99999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHhhhhchh
Q 008724          200 FITHRAFCDVLA  211 (556)
Q Consensus       200 L~~H~~~h~~~~  211 (556)
                      |..|++.++...
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999999877543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.7e-15  Score=127.99  Aligned_cols=81  Identities=22%  Similarity=0.328  Sum_probs=74.8

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccccCCcceecc-CCCccCCh
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRR  197 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~  197 (556)
                      .++++|.|.+|       ++.|.....|..|++.|  +++|+|.+|++.|.....|.+|++.+++++|+|+ |++.|.++
T Consensus        12 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A           12 ENKEVYQCRLC-------NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCBCTTT-------CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSH
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCH
Confidence            48899999999       99999999999999998  4899999999999999999999954789999999 99999999


Q ss_pred             hHHHHHHhhhh
Q 008724          198 DSFITHRAFCD  208 (556)
Q Consensus       198 ~~L~~H~~~h~  208 (556)
                      ..|.+|++.+|
T Consensus        83 ~~L~~H~~~~H   93 (107)
T 1wjp_A           83 FSIWRHQVEVH   93 (107)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHc
Confidence            99999998433

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.49  E-value=8.2e-15  Score=123.57  Aligned_cols=84  Identities=25%  Similarity=0.640  Sum_probs=77.7

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccc--cCCccccccccccccccc-cCCcceecc-CCCccC
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFS  195 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~  195 (556)
                      .+++|.|.+..|     ++.|.....|.+|++.|+++++|.|.  .|++.|.....|.+|+++ +++++|.|. |++.|.
T Consensus        12 ~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           12 KRRIHYCDYPGC-----TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS   86 (100)
T ss_dssp             SCCCEECCSSSC-----CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred             cCcceEcCCCCC-----CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence            678899997222     99999999999999999999999996  699999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHhhhh
Q 008724          196 RRDSFITHRAFCD  208 (556)
Q Consensus       196 ~~~~L~~H~~~h~  208 (556)
                      +...|.+|+++|.
T Consensus        87 ~~~~l~~H~~~H~   99 (100)
T 2ebt_A           87 RSDHLALHMKRHQ   99 (100)
T ss_dssp             SHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999999884

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.45  E-value=2.2e-15  Score=124.90  Aligned_cols=80  Identities=21%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCccc
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  159 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy  159 (556)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|++.|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            478999999999999999999999998             8899999999       9999999999999999985 889


Q ss_pred             ccccCCccccccccccccccc
Q 008724          160 KCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       160 ~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .|..|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.45  E-value=3.3e-14  Score=110.45  Aligned_cols=58  Identities=24%  Similarity=0.585  Sum_probs=46.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      ||+|+|++|||.|.....|.+|+++|.             ++++|.|.+|       ++.|.....|.+|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            577888888888888888888888887             7788888887       888888888888888887764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=4.7e-14  Score=113.89  Aligned_cols=72  Identities=21%  Similarity=0.489  Sum_probs=63.4

Q ss_pred             CCCCccccCC--CCCccCChHHHHHHHH-hcCCCchhhcccccccCCceeeCCC--CCcccCCCCCcccCccchhhhhcc
Q 008724           78 MATNRFLCEI--CNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus        78 ~~~k~y~C~~--Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      .++++|.|..  |++.|.....|..|++ .|.             ++++|.|++  |       ++.|.....|.+|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            4567888887  9999999999999988 687             788999988  7       8999999999999999


Q ss_pred             ccCCcccccccCCcccc
Q 008724          153 KHGEKKWKCEKCSKKYA  169 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~  169 (556)
                      |+++++|+|.+|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            99999999999999883

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.42  E-value=2.5e-14  Score=111.06  Aligned_cols=53  Identities=23%  Similarity=0.488  Sum_probs=29.8

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ||||.|.+|       ++.|.....|.+|+++|+++|||+|.+|++.|...+.|.+|+++
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc
Confidence            455555555       55555555555555555555555555555555555555555555

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.41  E-value=3.4e-15  Score=132.53  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      .+.+.++|.|..++...  ...+..|.+.+..          ....+.+.|++|.. .-.+.+.|.....|..|+ .|++
T Consensus         6 ~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l----------~~~~~~~~c~~~~~-~~~~~~~~~~~~~l~~h~-~h~~   71 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFI--HVTLEELKRYHQL----------TPEQKRLIRAIVKT-LIHNPQLLDESSYLYRLL-ASKA   71 (129)
T ss_dssp             CCTTCCGGGGCSSCEEE--ECCHHHHHHHTTS----------CHHHHHHHHHHHHH-HHHCGGGTTTHHHHHHHH-HHHH
T ss_pred             hcccccccccccCCeee--eecHHhhhccccC----------ChhhCcccchhhhc-ccCCCcccCCHHHHHHHH-HhCC
Confidence            45677899888765432  2234555444431          01456677877721 111134455677777777 6899


Q ss_pred             CcccccccCCccccccccccccccccCCcceecc-CCCccCChhHHHHHHhhhhch
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCDVL  210 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  210 (556)
                      +++|.|++|++.|.....|.+|+++| +++|.|. |++.|.++..|.+|++.|+..
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999999999999 9999999 999999999999999998754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.5e-13  Score=111.07  Aligned_cols=83  Identities=17%  Similarity=0.301  Sum_probs=67.5

Q ss_pred             hhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhh
Q 008724           70 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKH  149 (556)
Q Consensus        70 ~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H  149 (556)
                      +..+.+.|.++++|.|.+|++.|.....|.+|++.|+..         ...+++|.|.+|       ++.|.....|.+|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~---------~~~~~~~~C~~C-------~~~f~~~~~L~~H   66 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVCSKC-------GKTFTRRNTMARH   66 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS---------SCCCCCEECSSS-------CCEESCHHHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------cCCCcceECCCC-------CChhCCHHHHHHH
Confidence            345677888889999999999999999999998877610         001278999988       8999999999999


Q ss_pred             hccccCCcccccccCCccc
Q 008724          150 FSRKHGEKKWKCEKCSKKY  168 (556)
Q Consensus       150 ~r~H~~ekpy~C~~Cgk~F  168 (556)
                      +++|+++++|.|..|+..|
T Consensus        67 ~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           67 ADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHCCCCCSCCCCCCCCCC
T ss_pred             HHHccCCCCcccCCCCCCC
Confidence            9999999999999998765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.1e-13  Score=108.93  Aligned_cols=65  Identities=26%  Similarity=0.459  Sum_probs=59.5

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|       ++.|.....|.+|+++|+++
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhCCC
Confidence            445688999999999999999999999998             7899999999       99999999999999999999


Q ss_pred             ccccc
Q 008724          157 KKWKC  161 (556)
Q Consensus       157 kpy~C  161 (556)
                      ++|+|
T Consensus        73 ~p~~C   77 (77)
T 2cot_A           73 GPSSG   77 (77)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99988

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.1e-14  Score=116.63  Aligned_cols=68  Identities=21%  Similarity=0.439  Sum_probs=50.8

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCC----cccccccCCccccccccccccccc-cCCcceecc-CCCc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE----KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKL  193 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e----kpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~  193 (556)
                      ++++|.|.+|       ++.|.....|.+|++.|+.+    ++|+|.+|++.|.....|.+|+++ ++++++.|. |+..
T Consensus        12 ~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           12 GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            6777777777       77777777777777766654    677777777777777777777777 677777777 7765


Q ss_pred             c
Q 008724          194 F  194 (556)
Q Consensus       194 F  194 (556)
                      |
T Consensus        85 ~   85 (86)
T 1x6h_A           85 S   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=117.08  Aligned_cols=75  Identities=17%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             CCcccCccchhhhhccccCCcccccccCCcccc-ccccccccccc-cC-Ccceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA-VQSDWKAHSKI-CG-TREYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~-~~s~L~~H~r~-~g-ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                      ...+.....+..|+++|.++++|+|.+|++.|. .+..|++|+++ ++ +++|.|. |++.|.++..|.+|++.|+...
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            455677788999999999999999999999999 99999999999 67 8999999 9999999999999999987443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.36  E-value=1.1e-13  Score=112.66  Aligned_cols=76  Identities=25%  Similarity=0.538  Sum_probs=61.0

Q ss_pred             cccc--CCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC--CCcccCCCCCcccCccchhhhhccccCCc
Q 008724           82 RFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        82 ~y~C--~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      +|+|  +.|++.|.....|..|+++|.             ++++|.|++  |       ++.|.....|.+|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            4778  778888888888888888887             677888877  6       8888888888888888877  


Q ss_pred             cccccc---CCccccccccccccccc
Q 008724          158 KWKCEK---CSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~---Cgk~F~~~s~L~~H~r~  180 (556)
                       |.|.+   |++.|.....|.+|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             88887   88888777777777765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.4e-13  Score=111.02  Aligned_cols=69  Identities=22%  Similarity=0.453  Sum_probs=65.3

Q ss_pred             CCceeeCCC--CCcccCCCCCcccCccchhhhhc-cccCCccccccc--CCccccccccccccccc-cCCcceecc-CCC
Q 008724          120 RKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD-CGK  192 (556)
Q Consensus       120 ~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r-~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk  192 (556)
                      ++++|.|..  |       ++.|.....|.+|++ .|.++++|+|.+  |++.|..+..|.+|+++ +++++|.|. |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            678999987  6       999999999999999 799999999999  99999999999999999 899999999 999


Q ss_pred             ccC
Q 008724          193 LFS  195 (556)
Q Consensus       193 ~F~  195 (556)
                      .|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            994

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=2.5e-13  Score=109.53  Aligned_cols=67  Identities=16%  Similarity=0.356  Sum_probs=60.4

Q ss_pred             chhhhhccccCCcccccccCCccccccccccccccc-cC--Ccceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          145 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG--TREYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       145 ~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~g--ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                      .|.+|+++|+++++|+|++|++.|.....|.+|++. |.  +++|.|. |++.|.++..|.+|++.++...
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            467899999999999999999999999999999984 54  3899999 9999999999999999987544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=6.7e-13  Score=114.23  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=59.6

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHH-hcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhh-hcccc
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKH-FSRKH  154 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H-~r~H~  154 (556)
                      ..++++|.|++|++.|.....|.+|++ .|..          ..++++|.|.+|       ++.|..+..|.+| +++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----------~~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----------VVLNSSYVCVEC-------NFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSS----------CCCSCCEEETTT-------TEEESSTHHHHTHHHHTST
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----------CCCCCCcCCCCC-------CcccCCHHHHHHHHHHhcC
Confidence            356788999999999999999999987 4730          015788999998       8999999999999 78999


Q ss_pred             CCcccccccCCc
Q 008724          155 GEKKWKCEKCSK  166 (556)
Q Consensus       155 ~ekpy~C~~Cgk  166 (556)
                      ++|||+|.++.+
T Consensus        76 gekpy~C~~~~~   87 (102)
T 2ghf_A           76 GEENFKLTMVKR   87 (102)
T ss_dssp             TCCCEEEEECCC
T ss_pred             CCCCeeCCcccC
Confidence            999999987543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=104.57  Aligned_cols=65  Identities=23%  Similarity=0.438  Sum_probs=57.7

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      ....++++|+|++|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|.+|+++|+
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcC
Confidence            34566788999999999999999999999998             7889999998       899999999999999999


Q ss_pred             CCccc
Q 008724          155 GEKKW  159 (556)
Q Consensus       155 ~ekpy  159 (556)
                      +++||
T Consensus        70 ~~kp~   74 (74)
T 2lce_A           70 GEKPY   74 (74)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            99886

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=5.6e-13  Score=107.43  Aligned_cols=63  Identities=24%  Similarity=0.559  Sum_probs=56.9

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      .++++|.|++|       ++.|.....|.+|+++|+++++|+|.+|++.|.....|.+|+++ ++++||+|
T Consensus        14 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            36788999998       89999999999999999999999999999999999999999998 78899987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.8e-13  Score=116.14  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=71.8

Q ss_pred             CccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCccc-CccchhhhhccccC-CcccccccCCcc
Q 008724           90 KGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALG-DLTGIKKHFSRKHG-EKKWKCEKCSKK  167 (556)
Q Consensus        90 k~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~-~~s~L~~H~r~H~~-ekpy~C~~Cgk~  167 (556)
                      ..+.....+..|+++|.             ++++|.|.+|       ++.|. ....|.+|+++|++ +++|+|.+|++.
T Consensus         4 ~s~~~~~~~~~h~~~h~-------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIH-------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCCSCSHHHHTTT-------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCCcHHHHHHHhc-------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            34555667788999998             8899999999       99999 99999999999999 999999999999


Q ss_pred             ccccccccccccc-cCCcceecc
Q 008724          168 YAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       168 F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      |.++..|.+|+++ ++++|+...
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999 899886654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.30  E-value=5.4e-13  Score=108.58  Aligned_cols=76  Identities=26%  Similarity=0.606  Sum_probs=70.8

Q ss_pred             eeeC--CCCCcccCCCCCcccCccchhhhhccccCCccccccc--CCccccccccccccccc-cCCcceecc----CCCc
Q 008724          123 VYVC--PEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD----CGKL  193 (556)
Q Consensus       123 ~y~C--~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C~----Cgk~  193 (556)
                      +|.|  +.|       ++.|.....|..|+++|+++++|+|++  |++.|.....|.+|+++ ++   |.|.    |++.
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~   70 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFV   70 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCc
Confidence            5889  778       999999999999999999999999988  99999999999999999 55   9993    9999


Q ss_pred             cCChhHHHHHHhhhh
Q 008724          194 FSRRDSFITHRAFCD  208 (556)
Q Consensus       194 F~~~~~L~~H~~~h~  208 (556)
                      |.+...|.+|++.|+
T Consensus        71 f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           71 GKTWTLYLKHVAECH   85 (85)
T ss_dssp             ESSHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHhcC
Confidence            999999999999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=1.2e-12  Score=104.07  Aligned_cols=61  Identities=31%  Similarity=0.654  Sum_probs=54.8

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      +.++|.++++|+|++|++.|.....|.+|+++ +++++|+|. |++.|.++..|.+|+++|..
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            56788899999999999999999999999998 788999999 99999999999999998863

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=8.4e-13  Score=112.09  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             ccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcc-cCccchhhhhccccCCcccccccCCcccc
Q 008724           91 GFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL-GDLTGIKKHFSRKHGEKKWKCEKCSKKYA  169 (556)
Q Consensus        91 ~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F-~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~  169 (556)
                      .|.....|..|++.|.             ++++|.|++|       ++.| .....|..|+++| ++++|+|.+|+|.|.
T Consensus        15 ~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~   73 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLR   73 (96)
T ss_dssp             SSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCS
T ss_pred             CCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeC
Confidence            3455556666766665             5667777776       6777 6777777777777 777777777777777


Q ss_pred             cccccccc-ccccCCcce
Q 008724          170 VQSDWKAH-SKICGTREY  186 (556)
Q Consensus       170 ~~s~L~~H-~r~~gekpy  186 (556)
                      .+..|++| +++|.++||
T Consensus        74 ~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           74 SLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SHHHHHHHHHHHTCCCSS
T ss_pred             CHHHHHHHhHHhcCCCCC
Confidence            77777777 555555554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=9.1e-13  Score=111.85  Aligned_cols=72  Identities=15%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             CCcccCccchhhhhccccCCcccccccCCccc-cccccccccccccCCcceecc-CCCccCChhHHHHH-Hhhhh
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKY-AVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITH-RAFCD  208 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F-~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H-~~~h~  208 (556)
                      ...|.....|..|++.|.++++|+|++|++.| ..+..|+.|+++|++++|.|. |+|.|.++..|.+| +++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            35677778899999999999999999999999 999999999999989999999 99999999999999 77774

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=1.8e-12  Score=111.57  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhc-cc---cCCcccccccCCcccccccccccc-ccc-cCCcceecc-CC
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RK---HGEKKWKCEKCSKKYAVQSDWKAH-SKI-CGTREYKCD-CG  191 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H---~~ekpy~C~~Cgk~F~~~s~L~~H-~r~-~gekpy~C~-Cg  191 (556)
                      .++++|.|.+|       ++.|..+..|.+|++ .|   .++++|+|++|++.|..+..|.+| +++ .+++||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            48899999999       999999999999998 58   568999999999999999999999 788 799999997 54


Q ss_pred             C
Q 008724          192 K  192 (556)
Q Consensus       192 k  192 (556)
                      +
T Consensus        87 ~   87 (102)
T 2ghf_A           87 R   87 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=1.7e-12  Score=101.16  Aligned_cols=60  Identities=28%  Similarity=0.561  Sum_probs=51.3

Q ss_pred             hccccCCcccccccCCccccccccccccccc-c--CCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          150 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C--GTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       150 ~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~--gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      +++|.++++|.|++|++.|.....|.+|+++ |  ++++|.|. |++.|.++..|.+|++.++.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3578888999999999999999999999887 5  67899998 99999999999999988764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=4.7e-12  Score=100.01  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +.++++|+|++|++.|.....|.+|+++|.             ++++|.|.+|       ++.|.....|.+|+++|+++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhCC
Confidence            456677888888888888888888888776             6777888887       78888888888888888877


Q ss_pred             ccc
Q 008724          157 KKW  159 (556)
Q Consensus       157 kpy  159 (556)
                      ++.
T Consensus        64 ~p~   66 (70)
T 1x5w_A           64 MSG   66 (70)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            664

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.21  E-value=4e-12  Score=105.65  Aligned_cols=60  Identities=15%  Similarity=0.406  Sum_probs=50.9

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .+..+...++|.|++|++.|.++..|.+|+++ ++++||.|. |++.|.++..|.+|++..|
T Consensus        19 ~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            34566677889999999999999999999988 788999998 9999999999999976544

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.19  E-value=2.8e-12  Score=102.47  Aligned_cols=60  Identities=23%  Similarity=0.554  Sum_probs=39.5

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcce
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  186 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy  186 (556)
                      ++++|.|..|       ++.|.....|.+|++.|+++++|+|.+|++.|.++..|.+|+++ ++++||
T Consensus        14 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            5566666666       66666666666666666666666666666666666666666666 555554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.1e-11  Score=98.43  Aligned_cols=64  Identities=25%  Similarity=0.401  Sum_probs=51.6

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccc
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  153 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  153 (556)
                      .+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++|
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHHhc
Confidence            345677788888888888888888888888887             7788888888       88888888888888888


Q ss_pred             cCCc
Q 008724          154 HGEK  157 (556)
Q Consensus       154 ~~ek  157 (556)
                      +++.
T Consensus        66 ~~~~   69 (72)
T 1x6e_A           66 TSGP   69 (72)
T ss_dssp             HSSS
T ss_pred             CCCC
Confidence            7653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=7.2e-12  Score=100.99  Aligned_cols=60  Identities=23%  Similarity=0.489  Sum_probs=52.1

Q ss_pred             cccCCcccccccCCccccccccccccccc-cC---Ccceecc-CCCccCChhHHHHHHhhhhchh
Q 008724          152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG---TREYKCD-CGKLFSRRDSFITHRAFCDVLA  211 (556)
Q Consensus       152 ~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~g---ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  211 (556)
                      .|+++++|+|.+|++.|.....|.+|+++ ++   +++|.|. |++.|.++..|.+|++.+|...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            37889999999999999999999999998 54   8999999 9999999999999997666433

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1e-12  Score=103.86  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             HHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCcccccccccc
Q 008724           96 QNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK  175 (556)
Q Consensus        96 ~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~  175 (556)
                      ..|..|+++|.             ++++|.|.+|       ++.|.....|..       +++|+|++|++.|.....|.
T Consensus         4 ~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~   56 (73)
T 2ctu_A            4 GSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALN   56 (73)
T ss_dssp             CSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSC
T ss_pred             hhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHH
Confidence            45667777776             8899999999       999999998887       78999999999999999999


Q ss_pred             ccccc-cCCcceecc-C
Q 008724          176 AHSKI-CGTREYKCD-C  190 (556)
Q Consensus       176 ~H~r~-~gekpy~C~-C  190 (556)
                      +|+++ +++++|.|+ |
T Consensus        57 ~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           57 KDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSSCCCCCCCSSCCCC
T ss_pred             HHHHhhcCCCCCCCCCC
Confidence            99999 789999998 7

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.17  E-value=6.5e-12  Score=94.72  Aligned_cols=54  Identities=22%  Similarity=0.471  Sum_probs=38.2

Q ss_pred             CCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh
Q 008724          155 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       155 ~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      ++++|+|.+|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|++.|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35677777777777777777777777 677777777 7777777777777777765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=5.6e-12  Score=99.55  Aligned_cols=56  Identities=21%  Similarity=0.474  Sum_probs=31.1

Q ss_pred             ccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhhh
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |.++++|+|.+|++.|.....|.+|+++ +++++|+|. |++.|.++..|.+|++.|+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHh
Confidence            4445555555555555555555555555 455555555 5555555555555555554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.15  E-value=1.5e-12  Score=115.27  Aligned_cols=82  Identities=16%  Similarity=0.238  Sum_probs=71.5

Q ss_pred             CCCccccCCCCCccC------ChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcc
Q 008724           79 ATNRFLCEICNKGFQ------RDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~------~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      ..+.|.|++|.+.|.      ....|..|+ .|.             ++++|.|++|       ++.|.....|..|+++
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~H~~~   96 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------AISQFVCPLC-------LMPFSSSVSLKQHIRY   96 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------HHCSEECTTT-------CCEESSHHHHHHHHHH
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------CCCCeECCCC-------CcccCCHhHHHHHHHH
Confidence            456788999887776      566677776 465             7899999999       9999999999999999


Q ss_pred             ccCCcccccccCCccccccccccccccc-cCC
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  183 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~ge  183 (556)
                      |  +++|.|++|++.|.....|.+|+++ +++
T Consensus        97 H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           97 T--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             T--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             C--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9  8999999999999999999999998 554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.13  E-value=3.7e-11  Score=99.83  Aligned_cols=62  Identities=18%  Similarity=0.349  Sum_probs=52.5

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhh-cccc
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKH  154 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~  154 (556)
                      .+...+.|.|++|++.|.+...|.+|+++|+             ++++|.|.+|       ++.|..+..|.+|+ +.|.
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKYC-------PATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTTS-------SCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCCC-------CCEeCCHHHHHHhCcccCc
Confidence            3445678999999999999999999999998             8899999998       89999999999997 5677


Q ss_pred             CCc
Q 008724          155 GEK  157 (556)
Q Consensus       155 ~ek  157 (556)
                      +|+
T Consensus        82 ~E~   84 (85)
T 2lv2_A           82 SEN   84 (85)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            664

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.10  E-value=6e-11  Score=89.34  Aligned_cols=56  Identities=23%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      +|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5788888888888888888888887             7788888888       888888888888888888765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.08  E-value=3.4e-11  Score=90.70  Aligned_cols=55  Identities=29%  Similarity=0.500  Sum_probs=38.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      +++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEFC-------EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSSS-------SCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCCC-------cchhCCHHHHHHHHHHhc
Confidence            456777777777777777777777776             6677777777       777777777777777665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=6.7e-11  Score=95.21  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhh-ccccC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHG  155 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~~  155 (556)
                      |.++++|+|++|++.|.....|.+|+++|..          ...+++|.|.+|       ++.|.....|.+|+ +.|.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~----------~~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAE----------TVAALRFPCEFC-------GKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHH----------HTTTCCEECTTT-------CCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhc----------cCCCcccCCCCC-------CchhCCHHHHHHHHHHhCCC
Confidence            5677888888888888888888888888860          002678888888       88888888888888 45666


Q ss_pred             Ccccccc
Q 008724          156 EKKWKCE  162 (556)
Q Consensus       156 ekpy~C~  162 (556)
                      +++....
T Consensus        65 ~~~~~~~   71 (78)
T 2d9h_A           65 LLLAPQE   71 (78)
T ss_dssp             TSSCCSS
T ss_pred             CCCCccc
Confidence            6665443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=3.6e-11  Score=95.44  Aligned_cols=62  Identities=21%  Similarity=0.561  Sum_probs=52.0

Q ss_pred             hhhhhc-cccCCcccccc--cCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhh
Q 008724          146 IKKHFS-RKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       146 L~~H~r-~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      +..|++ .|.++++|.|.  .|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            444543 57788999997  599999999999999988 788999999 999999999999999876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=1.2e-10  Score=93.68  Aligned_cols=65  Identities=17%  Similarity=0.444  Sum_probs=48.7

Q ss_pred             hcCccccCCCCccccCCCCCccCChHHHHHHHH-hcCCCchhhcccccccC-CceeeCCCCCcccCCCCCcccCccchhh
Q 008724           71 ALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVER-KKVYVCPEPTCVHHDPSRALGDLTGIKK  148 (556)
Q Consensus        71 ~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~-~k~y~C~~C~C~~~~~~k~F~~~s~L~~  148 (556)
                      ..+.+.|.++++|+|++|++.|.....|..|++ .|.             . +++|.|++|       ++.|.....|.+
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------------~~~~~~~C~~C-------~~~f~~~~~L~~   63 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT-------------ENVAKFHCPHC-------DTVIARKSDLGV   63 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------------SSCSSEECSSS-------SCEESSHHHHHH
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------------CCCCccCCCCC-------CCccCCHHHHHH
Confidence            346667777888888888888888888888876 454             3 367888887       788888888888


Q ss_pred             hhccccC
Q 008724          149 HFSRKHG  155 (556)
Q Consensus       149 H~r~H~~  155 (556)
                      |++.|++
T Consensus        64 H~~~~H~   70 (77)
T 2ct1_A           64 HLRKQHS   70 (77)
T ss_dssp             HHHHTSC
T ss_pred             HHHHhCC
Confidence            8876554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=7.7e-11  Score=91.58  Aligned_cols=60  Identities=20%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHh-c-CCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccc
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRG-H-NLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  153 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~-H-~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  153 (556)
                      .|.++++|.|++|++.|.....|..|++. | .             ++++|.|++|       ++.|.....|.+|++.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR-------------NVKVYPCPFC-------FKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSS-------------SCCCEECTTT-------CCEESCHHHHHHHHHHH
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCC-------------CCcCeECCCC-------CCccCCHHHHHHHHHHH
Confidence            34555666666666666666666666665 4 2             4566666666       66666666666666655


Q ss_pred             cC
Q 008724          154 HG  155 (556)
Q Consensus       154 ~~  155 (556)
                      ++
T Consensus        64 H~   65 (66)
T 2drp_A           64 HK   65 (66)
T ss_dssp             TC
T ss_pred             cC
Confidence            53

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=96.91  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             CccccCCCCCccCChHHHHHHHHh-cCCCchhhcccccccCCce--------eeCCCCCcccCCCCCcccCccchhhhhc
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKVERKKV--------YVCPEPTCVHHDPSRALGDLTGIKKHFS  151 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~-H~~p~~~~~~~~~~~~~k~--------y~C~~C~C~~~~~~k~F~~~s~L~~H~r  151 (556)
                      ..|.|++|++.|.....|.+|+++ |.             ++++        |.|.+|       ++.|.....|.+|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            458899999999999999999998 76             4454        777777       888888888888888


Q ss_pred             cccCCcccccc
Q 008724          152 RKHGEKKWKCE  162 (556)
Q Consensus       152 ~H~~ekpy~C~  162 (556)
                      +|+++++|+|+
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            88888888886

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.3e-11  Score=97.38  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             hhhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhh
Q 008724           69 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK  148 (556)
Q Consensus        69 ~~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~  148 (556)
                      .+..+.+.|.++++|.|++|++.|.....|..                    +++|.|++|       ++.|.....|.+
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l~~   57 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAALNK   57 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSSCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHHHH
Confidence            35567788999999999999999998877654                    478999999       999999999999


Q ss_pred             hhccccCCcccccccC
Q 008724          149 HFSRKHGEKKWKCEKC  164 (556)
Q Consensus       149 H~r~H~~ekpy~C~~C  164 (556)
                      |+++|+++++|+|++|
T Consensus        58 H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           58 DEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSSCCCCCCCSSCCCC
T ss_pred             HHHhhcCCCCCCCCCC
Confidence            9999999999999998

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.00  E-value=6.7e-11  Score=89.04  Aligned_cols=44  Identities=16%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             CCcccCccchhhhhccccCCcccccccCCccccccccccccccc
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++.|.....|..|+++|+++++|.|++|++.|.....|.+|+++
T Consensus         8 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            8 GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.00  E-value=2.9e-10  Score=86.55  Aligned_cols=56  Identities=30%  Similarity=0.621  Sum_probs=42.6

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhh-ccccCC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHGE  156 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~~e  156 (556)
                      ++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            46788888888888888888888776             6777888877       77888888888885 566553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.95  E-value=1.5e-10  Score=88.13  Aligned_cols=47  Identities=34%  Similarity=0.796  Sum_probs=23.6

Q ss_pred             ccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHH
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHR  204 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~  204 (556)
                      +|+|++|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            44455555555555555555444 444455554 555555555555553

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.1e-10  Score=81.74  Aligned_cols=43  Identities=26%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            477788888888888888888888888888877 677888887 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=3.1e-10  Score=81.72  Aligned_cols=43  Identities=26%  Similarity=0.507  Sum_probs=35.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=85.12  Aligned_cols=58  Identities=16%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             CCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC-CCCcccCCCCCcccCccchhhhhccccCC
Q 008724           78 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP-EPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus        78 ~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~-~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ..+++|.|++|++.|. ...|..|+++ .             ++++|.|+ .|       ++.|..+..|..|+++|...
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhccc
Confidence            3455667777777776 6667777666 5             56666666 66       66666666666666666554


Q ss_pred             c
Q 008724          157 K  157 (556)
Q Consensus       157 k  157 (556)
                      +
T Consensus        64 ~   64 (66)
T 2eod_A           64 A   64 (66)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=9.2e-10  Score=87.18  Aligned_cols=60  Identities=20%  Similarity=0.397  Sum_probs=43.7

Q ss_pred             cccCCCCccccC--CCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcc
Q 008724           75 KSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus        75 ~~~~~~k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      ..+.++++|.|+  .|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHTT
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCCC-------CchhCCHHHHHHHHHh
Confidence            345566777776  47777777777777777776             6677777777       7777777777777777


Q ss_pred             cc
Q 008724          153 KH  154 (556)
Q Consensus       153 H~  154 (556)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.88  E-value=3.1e-10  Score=81.68  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577788888888888888888888888888888 678888887 6

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.9e-10  Score=81.19  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||+|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888887 678888887 6

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.9e-10  Score=81.78  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=36.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.++..|.+|+++ ++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.88  E-value=3e-10  Score=81.92  Aligned_cols=43  Identities=21%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 788888887 6

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3e-10  Score=81.80  Aligned_cols=43  Identities=23%  Similarity=0.453  Sum_probs=34.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            577788888888888888888888888888887 677888887 6

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.87  E-value=2.9e-10  Score=81.88  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477778888888888888888888888888877 677888887 6

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.4e-10  Score=81.44  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.4e-10  Score=82.40  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=36.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            578888888888888888888888888888888 788888887 6

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=4.2e-10  Score=93.66  Aligned_cols=61  Identities=11%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhcc-ccCCcc--------cccccCCccccccccccccccc-cCCcceecc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSR-KHGEKK--------WKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~-H~~ekp--------y~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      ..|.|..|       ++.|.....|.+|++. |.++++        |.|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus        24 ~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCC-------CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCccccc-------ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            44678887       9999999999999997 888887        8999999999999999999999 789999984

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.86  E-value=4.4e-10  Score=81.03  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=35.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|.++..|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477788888888888888888888888888888 778888887 6

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.9e-10  Score=81.33  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|.++..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777777888888888888888888888777 677778776 6

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.2e-10  Score=81.69  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=36.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 788888887 6

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4e-10  Score=81.08  Aligned_cols=43  Identities=28%  Similarity=0.488  Sum_probs=35.7

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.8e-10  Score=81.17  Aligned_cols=43  Identities=30%  Similarity=0.484  Sum_probs=36.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 788888887 6

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.86  E-value=2.7e-10  Score=88.19  Aligned_cols=52  Identities=17%  Similarity=0.347  Sum_probs=40.1

Q ss_pred             hhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHH
Q 008724          146 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSF  200 (556)
Q Consensus       146 L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L  200 (556)
                      |..|+++|+++++|+|++|++.|.....|.   ++ .++++|.|. |++.|....++
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            567888888888888888888888877775   45 677888888 88888776654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.3e-10  Score=81.51  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=35.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.7e-10  Score=81.26  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=34.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.5e-10  Score=81.47  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=34.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|.|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577778888888888888888888888888877 677888887 6

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.4e-10  Score=80.55  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=33.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|.++..|.+|+++ ++++||+|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367777788888888888888888888888777 677788876 6

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3.4e-10  Score=81.65  Aligned_cols=43  Identities=19%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577778888888888888888888888888777 677788877 6

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.3e-10  Score=81.62  Aligned_cols=43  Identities=19%  Similarity=0.402  Sum_probs=34.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.++..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888887 677888887 6

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.7e-10  Score=81.32  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=4.4e-10  Score=80.93  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|.++++|+|++|++.|.++..|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367777777778888888888877778888777 677777776 6

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.2e-10  Score=81.64  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888886 5

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.7e-10  Score=81.34  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            477777777778888888888887788888777 677777776 6

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.9e-10  Score=81.24  Aligned_cols=43  Identities=28%  Similarity=0.549  Sum_probs=36.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 688888887 6

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.7e-10  Score=81.34  Aligned_cols=43  Identities=28%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3.7e-10  Score=81.26  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477777788888888888888888888888777 677788876 6

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.85  E-value=4.6e-10  Score=80.73  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=33.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477778888888888888888888888888777 677888876 6

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.2e-10  Score=81.67  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 688888887 6

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.2e-10  Score=81.55  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=34.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.7e-10  Score=81.33  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=34.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.2e-10  Score=80.94  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=5.1e-10  Score=80.69  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      |+++|+++++|+|++|++.|.++..|.+|+++ ++++||+|. |
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66777777777777777777777777777777 677777776 5

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=5e-10  Score=80.65  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            366777777777777777777777777777777 677777776 6

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.4e-10  Score=81.57  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=34.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            577788888888888888888888888888877 677888887 6

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4.1e-10  Score=80.30  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      |+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56677777777777777777777777777777 667777776 5

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.4e-10  Score=80.95  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=34.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|.+|++.|.++..|.+|+++ ++++||+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            477788888888888888888888888888877 677888887 6

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=4.9e-10  Score=80.68  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=34.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            577788888888888888888888888888887 677888886

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=6e-10  Score=80.38  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|.+...|.+|+++ +++++|+|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788888888888888888888888888888 778888887 6

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.8e-10  Score=80.72  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=35.5

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ ++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.81  E-value=6.7e-10  Score=80.03  Aligned_cols=43  Identities=16%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|.++++|+|++|++.|..+..|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366677777777777777777777777777777 567777776 5

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.8e-10  Score=80.27  Aligned_cols=43  Identities=35%  Similarity=0.538  Sum_probs=33.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            367777778888888888888888888888777 677788876 6

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=9.9e-10  Score=85.69  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccc-cCCccccccccccccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE-KCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~-~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++++|.|.+|       ++.|. ...|..|+++ +++++|+|+ +|++.|..+..|.+|+++
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            6678888887       78888 8888888887 778888888 888888888888888877

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=7.9e-10  Score=79.76  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             hhhccccCCcccccccCCcccccccccccccc-c-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r-~-~gekpy~C~-C  190 (556)
                      .|+++|.++++|+|++|++.|.....|.+|++ + .+++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            46777778888888888888888888888877 6 677788876 6

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=7.2e-10  Score=79.80  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|.++++|+|++|++.|.....|.+|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            467777778888888888888888888888777 677788876 6

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=7e-10  Score=79.85  Aligned_cols=43  Identities=28%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            366677777777777777777777777777777 567777776 5

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.79  E-value=1.3e-09  Score=86.19  Aligned_cols=54  Identities=30%  Similarity=0.659  Sum_probs=30.5

Q ss_pred             ccCCccccccc--CCccccccccccccccc-cCCcceec--c-CCCccCChhHHHHHHhh
Q 008724          153 KHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAF  206 (556)
Q Consensus       153 H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~  206 (556)
                      +..+++|.|.+  |++.|.....|.+|+++ +++++|.|  . |++.|.++..|.+|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            33445555555  55555555555555555 45555555  3 66666666666666554

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.5e-09  Score=76.36  Aligned_cols=41  Identities=20%  Similarity=0.501  Sum_probs=36.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ ++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478889999999999999999999999999988 78899887

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.77  E-value=5e-09  Score=82.72  Aligned_cols=57  Identities=19%  Similarity=0.418  Sum_probs=46.5

Q ss_pred             cCCCCccccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC--CCcccCCCCCcccCccchhhhhcc
Q 008724           77 LMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSR  152 (556)
Q Consensus        77 ~~~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~--C~C~~~~~~k~F~~~s~L~~H~r~  152 (556)
                      ....++|.|.+  |++.|.....|..|+++|.             ++++|.|.+  |       ++.|.....|.+|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHhhc
Confidence            34457788888  8888888888888888887             788888865  6       8888888888888876


Q ss_pred             c
Q 008724          153 K  153 (556)
Q Consensus       153 H  153 (556)
                      |
T Consensus        72 H   72 (72)
T 2epa_A           72 H   72 (72)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=8.9e-10  Score=79.38  Aligned_cols=42  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc-C
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  190 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-C  190 (556)
                      |+++|.++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            66777777777777777777777777777777 677777776 6

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1e-09  Score=79.07  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=36.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            578888888889999999999999999999888 788888886

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.7e-09  Score=77.82  Aligned_cols=42  Identities=21%  Similarity=0.460  Sum_probs=36.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|.|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888888889999999999988889889888 788888885

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.1e-09  Score=78.79  Aligned_cols=42  Identities=26%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367777778888888888888888888888777 677788776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.75  E-value=1.4e-09  Score=76.53  Aligned_cols=41  Identities=20%  Similarity=0.454  Sum_probs=33.4

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      |+++|+++++|+|.+|++.|.++..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67778888888888888888888888888888 678888874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=3.7e-09  Score=79.09  Aligned_cols=45  Identities=16%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhc-cccCCcccccccCCccccc
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAV  170 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~~ekpy~C~~Cgk~F~~  170 (556)
                      .++++|.|++|       ++.|.....|.+|++ +|.++++|+|.+|++.|.+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            36677777777       777777777777776 7777777777777777764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.8e-09  Score=77.76  Aligned_cols=42  Identities=26%  Similarity=0.560  Sum_probs=36.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588888888899999999999999999999888 788888885

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.6e-09  Score=77.88  Aligned_cols=42  Identities=29%  Similarity=0.463  Sum_probs=35.2

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            577888888888888888888888888888888 778888885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.6e-09  Score=76.96  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=36.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            578888889999999999999999999999888 788888884

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=8.9e-09  Score=73.83  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=41.6

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            35678889999999999999999999999999998             8999999987

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.8e-09  Score=77.53  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=35.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 788888885

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=9.1e-09  Score=73.88  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.73  E-value=8.6e-10  Score=85.32  Aligned_cols=49  Identities=14%  Similarity=0.284  Sum_probs=44.7

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS  178 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~  178 (556)
                      ++++|.|+.|       ++.|.....|.   +.|+++++|+|.+|++.|.....+..+.
T Consensus        11 ~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A           11 NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            8999999999       99999988886   8899999999999999999998887654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.9e-09  Score=77.48  Aligned_cols=42  Identities=26%  Similarity=0.480  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            577888888888888888888888888888888 678888885

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.8e-09  Score=75.92  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=33.8

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      |+++|.++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67788888888888888888888888888888 678888874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.6e-09  Score=78.06  Aligned_cols=42  Identities=26%  Similarity=0.500  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.++..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888888 678888885

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.7e-09  Score=77.72  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888888 678888885

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=8.6e-09  Score=74.09  Aligned_cols=44  Identities=27%  Similarity=0.392  Sum_probs=41.0

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------CSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5677889999999999999999999999999998             8899999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.8e-09  Score=77.67  Aligned_cols=42  Identities=29%  Similarity=0.473  Sum_probs=35.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            578888888888888888888888888888888 678888885

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2e-09  Score=77.50  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=35.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            577888888888888888888888888888888 678888885

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.5e-09  Score=78.02  Aligned_cols=42  Identities=26%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 788888885

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=9.9e-09  Score=73.77  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1e-08  Score=73.65  Aligned_cols=44  Identities=30%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------TCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5677889999999999999999999999999998             8899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1e-08  Score=73.64  Aligned_cols=44  Identities=32%  Similarity=0.455  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8899999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=73.51  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCcCCCCC
Confidence            35677889999999999999999999999999998             8999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.72  E-value=1.1e-08  Score=73.63  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.1e-09  Score=77.26  Aligned_cols=42  Identities=26%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477788888888888888888888888888888 677888875

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9e-09  Score=73.90  Aligned_cols=45  Identities=24%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.6e-09  Score=77.77  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=35.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            577888888888888888888888888888888 778888885

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.71  E-value=9.7e-09  Score=73.64  Aligned_cols=45  Identities=24%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1e-08  Score=73.54  Aligned_cols=45  Identities=29%  Similarity=0.407  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.7e-09  Score=76.93  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=37.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|++|++.|.++..|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            488889999999999999999999999999888 788899884

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.1e-08  Score=73.40  Aligned_cols=45  Identities=22%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.4e-09  Score=78.27  Aligned_cols=42  Identities=19%  Similarity=0.365  Sum_probs=37.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999888 788899885

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.71  E-value=1.6e-09  Score=77.98  Aligned_cols=42  Identities=26%  Similarity=0.544  Sum_probs=34.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            577888888888888888888888888888888 778888875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.71  E-value=1.8e-09  Score=80.75  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=43.8

Q ss_pred             CCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCccee
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYK  187 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~  187 (556)
                      ++.|.....|..|+++|+++++|.|.+|++.|.....|.+|+++ ++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            67788888888899999988999999999999999999999888 7788773

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.9e-09  Score=77.41  Aligned_cols=42  Identities=26%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            577888888888888888888888888888888 678888875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.1e-09  Score=77.27  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=34.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|..+..|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            477888888888888888888888888888888 678888875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=2e-09  Score=76.64  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=36.6

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            588888899999999999999999999999888 788888884

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1e-08  Score=73.61  Aligned_cols=44  Identities=27%  Similarity=0.327  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------TCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.6e-09  Score=77.00  Aligned_cols=41  Identities=32%  Similarity=0.519  Sum_probs=33.3

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      |+++|+++++|+|++|++.|.++..|.+|+++ +++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            67778888888888888888888888888887 677888875

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=73.08  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.70  E-value=9.5e-09  Score=73.86  Aligned_cols=44  Identities=30%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            5677889999999999999999999999999998             8899999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.9e-09  Score=77.40  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=33.2

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.+...|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            477778888888888888888888888888877 677888774

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1e-08  Score=72.84  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            467888999999999999999999999999998             8899999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.3e-08  Score=73.13  Aligned_cols=45  Identities=27%  Similarity=0.305  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=73.27  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.9e-09  Score=76.61  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            578888888889998899999988888888888 788888884

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.4e-09  Score=76.26  Aligned_cols=41  Identities=22%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      |+++|+++++|+|.+|++.|..+..|.+|+++ +++++|+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            67778888888888888888888888888888 677888875

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=73.13  Aligned_cols=44  Identities=25%  Similarity=0.337  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            5677889999999999999999999999999998             8899999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.1e-09  Score=77.37  Aligned_cols=42  Identities=19%  Similarity=0.411  Sum_probs=34.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ ++++||+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            477888888888888888888888888888888 788888885

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1e-08  Score=73.58  Aligned_cols=44  Identities=25%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------CCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.2e-09  Score=76.44  Aligned_cols=42  Identities=19%  Similarity=0.399  Sum_probs=35.3

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|.++++|+|.+|++.|.....|.+|+++ .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            578888888888888888888888888888888 678888874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.5e-09  Score=75.32  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      |+++|.++++|+|++|++.|.....|.+|+++ ++++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            67788888888888888888888888888888 67888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1e-08  Score=73.46  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8899999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.5e-09  Score=76.96  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=34.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            377888888888888888888888888888888 678888875

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.2e-08  Score=73.20  Aligned_cols=45  Identities=24%  Similarity=0.336  Sum_probs=41.2

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999886

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.1e-09  Score=76.54  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=38.0

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|++|++.|.....|.+|+++ ++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688899999999999999999999999999999 788999883

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.1e-08  Score=73.40  Aligned_cols=44  Identities=30%  Similarity=0.371  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------TSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4e-09  Score=75.77  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccC
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  164 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~C  164 (556)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.2e-08  Score=73.28  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=72.96  Aligned_cols=44  Identities=30%  Similarity=0.388  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.2e-08  Score=73.06  Aligned_cols=45  Identities=24%  Similarity=0.252  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1e-08  Score=73.48  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.2e-08  Score=73.38  Aligned_cols=45  Identities=27%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            35677888999999999999999999999999998             8899999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.69  E-value=1.3e-08  Score=73.07  Aligned_cols=44  Identities=30%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8899999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.6e-09  Score=76.90  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=34.9

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            477888888888888888888888888888888 778888885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.8e-09  Score=77.59  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=36.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588888899999999999999999999999888 788888885

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.69  E-value=3.5e-09  Score=76.11  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=37.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccC
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  164 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~C  164 (556)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.69  E-value=1.2e-08  Score=73.05  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------SCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5677889999999999999999999999999998             8899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.2e-09  Score=73.84  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=2.4e-09  Score=76.93  Aligned_cols=42  Identities=29%  Similarity=0.544  Sum_probs=37.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999888 788899885

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.5e-08  Score=72.70  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.3e-08  Score=73.12  Aligned_cols=45  Identities=27%  Similarity=0.336  Sum_probs=41.4

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.1e-08  Score=73.50  Aligned_cols=45  Identities=22%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=2.4e-09  Score=75.37  Aligned_cols=40  Identities=28%  Similarity=0.523  Sum_probs=34.3

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      |+++|+++++|+|++|++.|.....|.+|+++ .+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            67788888888888888888888888888888 78888887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.1e-08  Score=73.55  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=40.7

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------GQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------SCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8899999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.5e-08  Score=72.73  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999875

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.9e-08  Score=75.16  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=43.3

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHH-hcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD  142 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~  142 (556)
                      ..+..+++|.|++|++.|.....|.+|++ +|.             ++++|.|++|       ++.|..
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            45677899999999999999999999987 898             8899999999       888865

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.1e-08  Score=73.43  Aligned_cols=44  Identities=25%  Similarity=0.426  Sum_probs=40.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=2.3e-09  Score=76.99  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=34.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            477888888888888888888888888888888 788888885

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=72.73  Aligned_cols=44  Identities=25%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------CSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=2.3e-09  Score=77.16  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=36.8

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +|+++|.++++|+|++|++.|.+...|.+|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888889999999999999999999999888 788888886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.2e-09  Score=76.31  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             ccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          151 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       151 r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      ++|+++++|+|++|++.|..+..|.+|+++ +++++|+|+
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            344445555555555555555555555444 444555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=72.71  Aligned_cols=44  Identities=20%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5667888999999999999999999999999998             8899999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.66  E-value=3e-09  Score=74.72  Aligned_cols=40  Identities=15%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             hhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      |+++|.++++|+|++|++.|..+..|.+|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67778888888888888888888888888888 67888877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=73.21  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=40.7

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            4567888999999999999999999999999998             8899999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=73.57  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.3e-08  Score=73.10  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=41.0

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.2e-08  Score=73.26  Aligned_cols=45  Identities=27%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999998             8899999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.4e-08  Score=72.92  Aligned_cols=45  Identities=29%  Similarity=0.365  Sum_probs=41.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            35667889999999999999999999999999998             8899999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=2.1e-08  Score=72.11  Aligned_cols=45  Identities=24%  Similarity=0.252  Sum_probs=41.2

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHH-hcCCCchhhcccccccCCceeeCCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.+.|.++++|+|++|++.|.....|..|++ +|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            35677889999999999999999999999999 998             8899999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.9e-08  Score=72.14  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            457888999999999999999999999999998             8899999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=4.2e-09  Score=75.80  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cC-Ccceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG-TREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~g-ekpy~C~  189 (556)
                      .|+++|.++++|.|.+|++.|.....|.+|+++ ++ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467777788888888888888888888888777 56 7777773

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.4e-09  Score=86.39  Aligned_cols=65  Identities=23%  Similarity=0.458  Sum_probs=57.4

Q ss_pred             ccchhhhhccccCCcccccccCCccccccccccccccccCCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          143 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       143 ~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      +..|..|++.|.++|+|.|.+|++.|. ...|..|+..+++++|.|. |++.|. +..|..|+++|..
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            457899999999999999999999994 8999999933899999999 999987 4899999998753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=4.8e-09  Score=74.79  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=35.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            578888888899999999999988899999888 78888876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=5.3e-09  Score=74.49  Aligned_cols=42  Identities=17%  Similarity=0.255  Sum_probs=34.1

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .|+++|.++++|.|++|++.|.....|.+|+++ +++++|+|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            367788888888888888888888888888888 678888874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=4.2e-09  Score=75.79  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             hccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          150 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       150 ~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +++|.++++|.|.+|++.|.++..|.+|+++ +++++|.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455666666666666666666666666666 556666665

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.4e-08  Score=71.75  Aligned_cols=44  Identities=27%  Similarity=0.334  Sum_probs=40.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             8899999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=2.2e-08  Score=71.59  Aligned_cols=42  Identities=19%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      ..|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            45778999999999999999999999999998             8999999998

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.8e-08  Score=72.36  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            456888999999999999999999999999998             8899999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=1.3e-08  Score=74.04  Aligned_cols=41  Identities=20%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCc
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK  166 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk  166 (556)
                      ..+++|.|.+|       ++.|.....|.+|+++|+++++|+|++|+|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            36778888887       788888888888888888888888888875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=6.5e-09  Score=74.37  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=20.6

Q ss_pred             cCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCC
Q 008724          119 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS  165 (556)
Q Consensus       119 ~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cg  165 (556)
                      .++++|.|.+|       ++.|.....|.+|+++|+++++|.|++||
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            34455555554       45555555555555555555555555553

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=3.9e-08  Score=71.43  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=38.4

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      .+..+++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            4667889999999999999999999999998             8999999999

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5.2e-08  Score=69.82  Aligned_cols=44  Identities=25%  Similarity=0.294  Sum_probs=39.9

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            35667889999999999999999999999999998             889999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5.7e-08  Score=69.69  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=40.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=6e-08  Score=69.41  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=4.6e-08  Score=70.21  Aligned_cols=43  Identities=28%  Similarity=0.377  Sum_probs=39.6

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5e-08  Score=70.00  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.+...|..|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5677889999999999999999999999999998             889999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5.6e-08  Score=69.63  Aligned_cols=43  Identities=28%  Similarity=0.421  Sum_probs=39.5

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5667888999999999999999999999999998             889999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5.5e-08  Score=69.60  Aligned_cols=44  Identities=30%  Similarity=0.400  Sum_probs=40.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5.9e-08  Score=69.59  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=39.3

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5567889999999999999999999999999998             889999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.1e-08  Score=73.54  Aligned_cols=40  Identities=28%  Similarity=0.521  Sum_probs=27.6

Q ss_pred             hccccCCcccccccCCccccccccccccccc-cCCcceecc
Q 008724          150 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       150 ~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      +++|+++++|+|++|++.|..+..|.+|+++ ++++||+|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            4566667777777777777777777777766 566777664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5e-08  Score=70.06  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            4567889999999999999999999999999998             889999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5.9e-08  Score=69.51  Aligned_cols=43  Identities=26%  Similarity=0.327  Sum_probs=39.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=5.2e-08  Score=69.75  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=40.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=6.5e-08  Score=69.29  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=39.5

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=5.9e-08  Score=69.51  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35667889999999999999999999999999998             889999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.53  E-value=5.6e-08  Score=69.72  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.53  E-value=6.3e-08  Score=67.86  Aligned_cols=41  Identities=24%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            457888999999999999999999999999998             88999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=6.7e-08  Score=69.24  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=39.5

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            5677889999999999999999999999999998             889999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=6.5e-08  Score=69.20  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=39.8

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            35667889999999999999999999999999998             889999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=7.3e-08  Score=69.12  Aligned_cols=43  Identities=28%  Similarity=0.389  Sum_probs=39.5

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=8.2e-08  Score=67.18  Aligned_cols=41  Identities=17%  Similarity=0.315  Sum_probs=37.4

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            456888999999999999999999999999998             88999984

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=8e-08  Score=68.91  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=39.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            5667888999999999999999999999999998             889999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.5e-08  Score=73.20  Aligned_cols=40  Identities=20%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             hccccCCcccccc--cCCccccccccccccccc-cCCcceecc
Q 008724          150 FSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD  189 (556)
Q Consensus       150 ~r~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~gekpy~C~  189 (556)
                      .++|+++++|+|.  +|++.|..+..|.+|+++ .+++||+|.
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   46 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS   46 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3444444445554  455555444444444444 344444444

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=7.5e-08  Score=69.04  Aligned_cols=43  Identities=26%  Similarity=0.422  Sum_probs=38.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4567888999999999999999999999999998             889999964

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=1.3e-08  Score=72.72  Aligned_cols=39  Identities=23%  Similarity=0.535  Sum_probs=24.5

Q ss_pred             hccccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          150 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       150 ~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      .++|+++++|+|.+|++.|..+..|.+|+++ +++++|.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            4456666666666666666666666666666 55666665

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=7.4e-08  Score=69.01  Aligned_cols=43  Identities=26%  Similarity=0.334  Sum_probs=39.3

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=7.4e-08  Score=68.92  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=39.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999974

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.51  E-value=4.1e-08  Score=81.80  Aligned_cols=60  Identities=15%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhc
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS  151 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r  151 (556)
                      ++...|.++++|+|++|++.|.....|..|+++|.             ++++|.|..|       .    ....|..|.+
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~-------~----~~~~~~~~~~   70 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQ-------E----RRKQLLSKQK   70 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCC-------S----CCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchh-------h----hHHHHHhhhc
Confidence            34556777888888888888888888888888887             7788888766       2    2456777777


Q ss_pred             cccC
Q 008724          152 RKHG  155 (556)
Q Consensus       152 ~H~~  155 (556)
                      .|.+
T Consensus        71 ~~~~   74 (88)
T 1x6f_A           71 YADG   74 (88)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7776

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=7.5e-08  Score=68.11  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=39.0

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            35667889999999999999999999999999998             88999984

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=8.5e-08  Score=67.81  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=39.1

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            35677889999999999999999999999999998             88999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=5.8e-08  Score=69.46  Aligned_cols=43  Identities=33%  Similarity=0.401  Sum_probs=39.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------SCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            5567889999999999999999999999999998             889999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=7.7e-08  Score=68.12  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            5677889999999999999999999999999998             88999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=9.8e-08  Score=67.56  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            46788899999999999999999999999998             889999964

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=8.5e-08  Score=68.77  Aligned_cols=43  Identities=30%  Similarity=0.354  Sum_probs=39.2

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccC-CceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVER-KKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~-~k~y~C~~  128 (556)
                      +.+.|.++++|.|++|++.|.....|..|+++|.             + +++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            5667889999999999999999999999999998             7 89999964

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=1.1e-07  Score=68.32  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            456788999999999999999999999999998             889999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=2.5e-08  Score=69.65  Aligned_cols=37  Identities=19%  Similarity=0.558  Sum_probs=21.1

Q ss_pred             cccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       152 ~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      +|+++++|+|++|++.|.....|.+|+++ ++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45555555555555555555555555555 45555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=8.3e-08  Score=68.81  Aligned_cols=44  Identities=23%  Similarity=0.399  Sum_probs=39.6

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT-------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT-------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC-------------CCCCCCCCC
Confidence            35667889999999999999999999999999998             889999963

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=8.6e-08  Score=68.40  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=38.2

Q ss_pred             ccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           74 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        74 ~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      ...|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            456788999999999999999999999999998             889999963

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=9.4e-08  Score=68.36  Aligned_cols=44  Identities=25%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999964

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=8e-08  Score=68.91  Aligned_cols=44  Identities=34%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            35677889999999999999999999999999998             889999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.46  E-value=1.1e-07  Score=66.42  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=37.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            3567888999999999999999999999999998             8899987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=8.4e-08  Score=68.79  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5667889999999999999999999999999998             889999963

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.2e-07  Score=67.28  Aligned_cols=43  Identities=30%  Similarity=0.387  Sum_probs=38.9

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            35667889999999999999999999999999998             88999984

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=1.3e-07  Score=68.21  Aligned_cols=44  Identities=30%  Similarity=0.354  Sum_probs=40.2

Q ss_pred             CccccCCCCccccC--CCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~--~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      +.+.|.++++|+|.  +|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            45678889999998  89999999999999999998             8899999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=66.85  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=37.2

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      +.+.|.++++|+|++|++.|.....|.+|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            4567888999999999999999999999999998             7888887

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=67.08  Aligned_cols=42  Identities=24%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      +.+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            4567888999999999999999999999999998             88999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=67.27  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=38.9

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|.|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA-------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC-------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCC
Confidence            35677889999999999999999999999999998             88999884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=3.4e-08  Score=70.01  Aligned_cols=37  Identities=14%  Similarity=0.372  Sum_probs=17.3

Q ss_pred             cccCCcccccccCCccccccccccccccc-cCCcceec
Q 008724          152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  188 (556)
Q Consensus       152 ~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C  188 (556)
                      +|+++++|+|.+|++.|..+..|.+|+++ +++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            34444444444444444444444444444 34444444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=4.5e-08  Score=68.52  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=34.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  161 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C  161 (556)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.44  E-value=1.8e-08  Score=75.21  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             CCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccc
Q 008724           89 NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  160 (556)
Q Consensus        89 gk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~  160 (556)
                      +|.|.....|..|+++|.             ++++|.|.+|       ++.|.....|.+|+++|+++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            577888889999999998             8999999999       999999999999999999999874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=1e-07  Score=66.79  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=37.2

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHH-------------SCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcC-------------CCCCCCC
Confidence            3567888999999999999999999999999998             8888887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.1e-07  Score=68.16  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=39.1

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            35677889999999999999999999999999998             88999996

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.8e-07  Score=65.19  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=35.8

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      ..|.++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            45778899999999999999999999999998             8889987

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.5e-07  Score=65.65  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=37.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      +.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            5677889999999999999999999999999998             8888887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.4e-07  Score=66.80  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=38.8

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  127 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~  127 (556)
                      .+.+.|.++++|+|++|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            35677889999999999999999999999999998             88999883

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=3.6e-07  Score=73.50  Aligned_cols=64  Identities=14%  Similarity=0.167  Sum_probs=43.8

Q ss_pred             hhcCccccCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhh
Q 008724           70 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKH  149 (556)
Q Consensus        70 ~~~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H  149 (556)
                      +..|...+..+++|.|.+|++.|. ...|..|+ .|.             ++++|.|+.|       ++.|. +..|..|
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------~~~~~~C~~C-------~~~~~-~~~l~~H   61 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------GARTELCGNC-------GRNVL-VKDLKTH   61 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------HHCEEECSSS-------CCEEE-TTGGGTH
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc-------------CCCceEcccC-------CCcCc-HHHHHHH
Confidence            345556667777777777777773 77777777 565             6777777776       66655 4677777


Q ss_pred             hccccCC
Q 008724          150 FSRKHGE  156 (556)
Q Consensus       150 ~r~H~~e  156 (556)
                      +++|.++
T Consensus        62 ~~~c~~~   68 (75)
T 2d9k_A           62 PEVCGRE   68 (75)
T ss_dssp             HHHBTTB
T ss_pred             HHHccCC
Confidence            7776654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=3.8e-08  Score=82.00  Aligned_cols=50  Identities=12%  Similarity=0.232  Sum_probs=37.1

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|..|.    ++..|..|.++
T Consensus        22 ~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           22 QNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            6778888877       78888888888888888888888886654    45566666666

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.20  E-value=3e-07  Score=62.36  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             hhccccCCcccccccCCccccccccccccccc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |+++|+++++|+|++|++.|.....|.+|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            55666666666666666666666666666655

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.18  E-value=8e-07  Score=61.16  Aligned_cols=37  Identities=22%  Similarity=0.471  Sum_probs=32.6

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  126 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C  126 (556)
                      |.++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCcccee
Confidence            356789999999999999999999999998             7788765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=2.8e-07  Score=62.51  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=20.7

Q ss_pred             ccccCCcccccccCCccccccccccccccc-cCCc
Q 008724          151 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  184 (556)
Q Consensus       151 r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gek  184 (556)
                      ++|+++++|+|.+|++.|.....|.+|+++ ++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            455666666666666666666666666665 4444

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.01  E-value=3e-06  Score=56.21  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=24.9

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|++|++.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            57999999999999999999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.01  E-value=5e-06  Score=65.73  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             CccccCCCCccccCC--CCCccCChHHHHHHH-HhcCCCchhhcccccccCCceeeCCCC
Q 008724           73 SPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKVERKKVYVCPEP  129 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~--Cgk~F~~~~~L~~H~-r~H~~p~~~~~~~~~~~~~k~y~C~~C  129 (556)
                      ......++|||+|.+  |+|.|.+..+|.+|+ ++|+             ++|||.|..-
T Consensus        18 ~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~~   64 (73)
T 1x3c_A           18 FPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAEV   64 (73)
T ss_dssp             CSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCSC
T ss_pred             ccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCcccccc
Confidence            345678899999975  999999999999997 6898             8999999753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.01  E-value=1.1e-06  Score=58.75  Aligned_cols=27  Identities=19%  Similarity=0.608  Sum_probs=12.1

Q ss_pred             cCCcccccccCCccccccccccccccc
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .++++|+|.+|++.|.....|.+|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHH
Confidence            344444444444444444444444444

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.01  E-value=8.9e-07  Score=58.97  Aligned_cols=26  Identities=23%  Similarity=0.552  Sum_probs=10.8

Q ss_pred             CCcccccccCCccccccccccccccc
Q 008724          155 GEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       155 ~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++++|+|.+|++.|.....|.+|+++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHH
Confidence            33444444444444444444444433

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.98  E-value=2.4e-06  Score=58.70  Aligned_cols=35  Identities=11%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  161 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C  161 (556)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|
T Consensus         3 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            5677777777       7777777777777777777777765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.98  E-value=4.9e-06  Score=55.38  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=28.3

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |.++++|+|.+|++.|.....|.+|+++|.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            567899999999999999999999999997

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.97  E-value=4.9e-06  Score=55.23  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |.++++|+|++|++.|.....|..|+++|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            567889999999999999999999999997

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=4.1e-06  Score=56.53  Aligned_cols=32  Identities=22%  Similarity=0.525  Sum_probs=29.6

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.|.++++|+|++|++.|.....|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            35778899999999999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.92  E-value=7.9e-06  Score=55.09  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=31.2

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.+.+.++++|+|++|++.|.....|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            4567888999999999999999999999999986

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=2e-06  Score=58.49  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=13.2

Q ss_pred             cccCCcccccccCCcccccccccccc
Q 008724          152 RKHGEKKWKCEKCSKKYAVQSDWKAH  177 (556)
Q Consensus       152 ~H~~ekpy~C~~Cgk~F~~~s~L~~H  177 (556)
                      +|++++||+|++|++.|..+..|.+|
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHH
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHH
Confidence            44445555555555555555555555

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.86  E-value=5.1e-06  Score=65.67  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=22.4

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhh-ccccCCcccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCE  162 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~~ekpy~C~  162 (556)
                      ++|||+|.+-+|     +++|.....|.+|+ ++|+++|||.|.
T Consensus        24 GEKPYkC~~~~C-----gKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           24 PYRPYRCVHQGC-----FAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSCSCBCCSTTC-----CCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             CCCCeECCCCCc-----ChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            566666654111     66666666666665 456666666664

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=1.1e-05  Score=54.03  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=28.8

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+.++++|+|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            4677899999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=1.3e-05  Score=53.65  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .|.++++|+|++|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            5678899999999999999999999999997

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.83  E-value=3.5e-06  Score=55.38  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=15.7

Q ss_pred             ccccccCCccccccccccccccc-cCCcce
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI-CGTREY  186 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~-~gekpy  186 (556)
                      ||+|++|++.|...+.|.+|+++ ++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            45555555555555555555555 444443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=1.2e-05  Score=53.76  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=28.9

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .|.++++|+|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            4677899999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=3.2e-06  Score=57.20  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=13.5

Q ss_pred             ccCCcccccccCCcccccc-ccccccccc
Q 008724          153 KHGEKKWKCEKCSKKYAVQ-SDWKAHSKI  180 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~-s~L~~H~r~  180 (556)
                      |.++++|+|.+|++.|... ..|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            4444445555555444444 444444444

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=3.7e-06  Score=56.48  Aligned_cols=28  Identities=18%  Similarity=0.439  Sum_probs=12.3

Q ss_pred             ccCCcccccccCCccccccccccccccc
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.++++|+|.+|++.|.....|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            3344444444444444444444444443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.79  E-value=2.1e-06  Score=59.11  Aligned_cols=24  Identities=21%  Similarity=0.510  Sum_probs=11.3

Q ss_pred             CCcccccccCCccccccccccccc
Q 008724          155 GEKKWKCEKCSKKYAVQSDWKAHS  178 (556)
Q Consensus       155 ~ekpy~C~~Cgk~F~~~s~L~~H~  178 (556)
                      +||||+|++|+|+|.+++.|++|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            344444444444444444444444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=1.6e-05  Score=53.09  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+..+++|.|++|++.|.....|..|+++|.
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4667899999999999999999999999997

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.78  E-value=4.8e-06  Score=60.02  Aligned_cols=38  Identities=13%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             hhhhhccccCCcccccc--cCCccccccccccccccc-cCC
Q 008724          146 IKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGT  183 (556)
Q Consensus       146 L~~H~r~H~~ekpy~C~--~Cgk~F~~~s~L~~H~r~-~ge  183 (556)
                      +..|...|+++++|+|+  .|++.|.+.+.|++|+++ +++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            34455567777777774  577777777777777776 443

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=4.2e-06  Score=56.19  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=12.1

Q ss_pred             ccCCcccccccCCccccccccccccccc
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.++++|+|.+|++.|.....|.+|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            3344444444444444444444444433

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.76  E-value=6.9e-06  Score=54.41  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=21.0

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  160 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~  160 (556)
                      ++|.|++|       ++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPEC-------PKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSS-------CCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCC-------CchhCCHHHHHHHHHHhCCCCCCC
Confidence            35666666       666666666666666666666664

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=4.6e-06  Score=55.82  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=11.2

Q ss_pred             cCCcccccccCCccccccccccccccc
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .++++|+|.+|++.|.....|.+|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            5 SSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            334444444444444444444444433

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=1.7e-05  Score=53.14  Aligned_cols=31  Identities=42%  Similarity=0.581  Sum_probs=28.3

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+..+++|+|++|++.|.....|..|+++|.
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            3567789999999999999999999999997

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.8e-05  Score=55.04  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             ccCCCCccccCC--CCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+.++++|+|++  |+|.|..+..|++|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            456789999986  9999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.74  E-value=1.7e-05  Score=49.52  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.9

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999999884

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.74  E-value=3.7e-06  Score=57.20  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=10.8

Q ss_pred             CCcccCccchhhhhccccCCccc
Q 008724          137 SRALGDLTGIKKHFSRKHGEKKW  159 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~ekpy  159 (556)
                      ++.|.....|.+|+++|+++++|
T Consensus        15 ~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A           15 GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcccCCHHHHHHHHHHhCCCCCC
Confidence            44444444444444444444443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=1.4e-05  Score=53.93  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             cccCCCCccccCCCCCccCCh-HHHHHHHHhcC
Q 008724           75 KSLMATNRFLCEICNKGFQRD-QNLQLHRRGHN  106 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~-~~L~~H~r~H~  106 (556)
                      +.|.++++|+|++|++.|... ..|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            357788999999999999999 99999999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=6.5e-06  Score=55.06  Aligned_cols=27  Identities=26%  Similarity=0.580  Sum_probs=11.7

Q ss_pred             cCCcccccccCCccccccccccccccc
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      .++++|.|.+|++.|.....|.+|+++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            334444444444444444444444443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.71  E-value=5.7e-06  Score=57.61  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=5.0

Q ss_pred             CCcccccccccccc
Q 008724          164 CSKKYAVQSDWKAH  177 (556)
Q Consensus       164 Cgk~F~~~s~L~~H  177 (556)
                      |+|.|.+++.|++|
T Consensus        17 C~k~F~~~~~L~~H   30 (38)
T 2eln_A           17 CDYSTPDKYKLQAH   30 (38)
T ss_dssp             CCCEESCHHHHHHH
T ss_pred             CCCccCCHHHHHHH
Confidence            33333333333333

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.69  E-value=1.5e-05  Score=49.98  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=24.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.69  E-value=5.7e-06  Score=60.01  Aligned_cols=24  Identities=38%  Similarity=0.815  Sum_probs=12.4

Q ss_pred             CCcceecc-CCCccCChhHHHHHHh
Q 008724          182 GTREYKCD-CGKLFSRRDSFITHRA  205 (556)
Q Consensus       182 gekpy~C~-Cgk~F~~~~~L~~H~~  205 (556)
                      ++|+|.|. |++.|.++..|.+|++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhh
Confidence            34455555 5555555555555555

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.68  E-value=4.8e-05  Score=59.65  Aligned_cols=31  Identities=26%  Similarity=0.525  Sum_probs=27.3

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+.++++|+|.+|+|.|.+...|.+|+++|+
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            3567889999999999999999999999997

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=2.2e-05  Score=53.23  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHH-HHhcC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLH-RRGHN  106 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H-~r~H~  106 (556)
                      +.|.++++|+|++|++.|.....|..| +++|.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            357788999999999999999999999 88886

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.67  E-value=1.6e-05  Score=53.97  Aligned_cols=30  Identities=27%  Similarity=0.712  Sum_probs=27.3

Q ss_pred             cCCCCccccC--CCCCccCChHHHHHHHHhcC
Q 008724           77 LMATNRFLCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        77 ~~~~k~y~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |.++++|+|.  .|++.|.....|.+|+++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            4567899999  59999999999999999997

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.64  E-value=1.2e-05  Score=63.07  Aligned_cols=26  Identities=27%  Similarity=0.580  Sum_probs=11.8

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      +|||+|. |+|.|.++..|.+|+++|.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            3444444 4444444444444444443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.63  E-value=2.7e-05  Score=56.33  Aligned_cols=30  Identities=23%  Similarity=0.531  Sum_probs=28.3

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHH-hcC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRR-GHN  106 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~  106 (556)
                      |.++++|+|.+|+|.|.....|..|++ +|.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            678899999999999999999999999 887

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.62  E-value=2.2e-05  Score=53.96  Aligned_cols=27  Identities=33%  Similarity=0.720  Sum_probs=25.0

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHH
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHR  102 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~  102 (556)
                      .+.++++|+|++|||.|.+..+|.+|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            357889999999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=9.5e-06  Score=54.41  Aligned_cols=16  Identities=31%  Similarity=0.625  Sum_probs=6.0

Q ss_pred             CCCccCChhHHHHHHh
Q 008724          190 CGKLFSRRDSFITHRA  205 (556)
Q Consensus       190 Cgk~F~~~~~L~~H~~  205 (556)
                      |++.|.....|.+|++
T Consensus        15 C~k~f~~~~~l~~H~~   30 (36)
T 2els_A           15 CNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             TCCEESSHHHHHHHHH
T ss_pred             CCceeCCHHHHHHHHH
Confidence            3333333333333333

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.61  E-value=1e-05  Score=53.05  Aligned_cols=31  Identities=13%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCccc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  159 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy  159 (556)
                      ++|.|.+|       ++.|.....|.+|+++|+++++|
T Consensus         1 kp~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            57999999       99999999999999999999987

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.60  E-value=3.2e-05  Score=48.42  Aligned_cols=27  Identities=26%  Similarity=0.659  Sum_probs=25.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|+|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999885

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=4.1e-05  Score=48.34  Aligned_cols=27  Identities=19%  Similarity=0.549  Sum_probs=25.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|.|.+|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            468999999999999999999999997

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.55  E-value=4e-05  Score=48.26  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=24.6

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.54  E-value=5.1e-05  Score=47.63  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47999999999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.52  E-value=4.3e-05  Score=47.56  Aligned_cols=25  Identities=12%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      ++||.|. |++.|..+..|.+|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            4678887 888888888888887765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.48  E-value=6.3e-05  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999987

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.48  E-value=3.7e-05  Score=48.09  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      ++||.|. |++.|..+..|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4678887 888888888888887765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.60  E-value=1.7e-05  Score=49.02  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=23.9

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|++||+.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999873

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.45  E-value=6.3e-05  Score=50.85  Aligned_cols=30  Identities=27%  Similarity=0.557  Sum_probs=27.5

Q ss_pred             cCCCCccccCC--CCCccCChHHHHHHHHhcC
Q 008724           77 LMATNRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        77 ~~~~k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.++++|.|.+  |++.|.....|.+|+++|.
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            56788999995  9999999999999999996

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=6.1e-05  Score=47.18  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|.+|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            47999999999999999999999986

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.39  E-value=2.5e-05  Score=52.92  Aligned_cols=16  Identities=38%  Similarity=0.700  Sum_probs=6.4

Q ss_pred             CCcccccccccccccc
Q 008724          164 CSKKYAVQSDWKAHSK  179 (556)
Q Consensus       164 Cgk~F~~~s~L~~H~r  179 (556)
                      |++.|...+.|.+|++
T Consensus        16 C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A           16 CGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CCCEESCHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHH
Confidence            4444444433333333

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.39  E-value=7e-05  Score=46.81  Aligned_cols=25  Identities=40%  Similarity=0.756  Sum_probs=19.1

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      +++|.|. |++.|.....|.+|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhc
Confidence            4677787 888888888888887765

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=6.5e-05  Score=46.97  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=24.4

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999986

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.37  E-value=0.0001  Score=45.52  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=23.1

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|+|++|++.|.....|.+|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999986

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.36  E-value=0.00013  Score=47.23  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=25.2

Q ss_pred             CCccccC--CCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|.|.  .|++.|.....|..|+++|.
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4689999  89999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.47  E-value=2.8e-05  Score=49.32  Aligned_cols=24  Identities=25%  Similarity=0.649  Sum_probs=11.4

Q ss_pred             cccccccCCccccccccccccccc
Q 008724          157 KKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       157 kpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ++|.|.+|++.|.....|.+|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            344444444444444444444444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.46  E-value=2.9e-05  Score=49.10  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=24.4

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            47999999999999999999999986

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.34  E-value=0.00013  Score=46.88  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.4

Q ss_pred             CccccC--CCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|+  .|++.|.....|..|+++|.
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            479998  99999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.43  E-value=3.2e-05  Score=49.03  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=25.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|+|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            368999999999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.41  E-value=3.4e-05  Score=48.75  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=10.7

Q ss_pred             ccccccCCccccccccccccccc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      +|.|.+|++.|.....|.+|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            34444444444444444444444

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.29  E-value=0.00013  Score=52.21  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             cccccccc-cCCcceec--c-CCCccCChhHHHHHHhhhh
Q 008724          173 DWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       173 ~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .+..|..+ .+++||.|  . |++.|.+++.|.+|+++|.
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            34445555 78999999  4 9999999999999999985

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.33  E-value=4.5e-05  Score=46.99  Aligned_cols=23  Identities=26%  Similarity=0.692  Sum_probs=12.9

Q ss_pred             ccccccCCccccccccccccccc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ||+|++|++.|.....|.+|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555555555555555555544

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.24  E-value=0.00016  Score=45.78  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=24.0

Q ss_pred             CccccCCCCCccCChHHHHHH-HHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLH-RRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H-~r~H~  106 (556)
                      ++|.|+.|++.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            479999999999999999999 78886

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.17  E-value=0.00013  Score=45.94  Aligned_cols=28  Identities=25%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ++|.|..|       ++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYC-------GRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHHhccC
Confidence            45666666       66666666666666666654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.17  E-value=0.00013  Score=45.72  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=16.5

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPEC-------PKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSS-------SCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCC-------CchhCCHHHHHHHHHHhcCC
Confidence            4566665       66666666666666666554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.07  E-value=0.00024  Score=45.82  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=12.1

Q ss_pred             CCcccCccchhhhhccccCC
Q 008724          137 SRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ++.|.....|.+|+++|+++
T Consensus        12 ~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A           12 DKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCCBSSSHHHHHHHGGGTCC
T ss_pred             CCccCCHHHHHHHHHHccCC
Confidence            56666666666666666554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.05  E-value=0.00017  Score=45.12  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=16.0

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVC-------TRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCC-------CcccCCHHHHHHHHHHhcCC
Confidence            4556555       56666666666666665554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.02  E-value=0.00024  Score=45.53  Aligned_cols=27  Identities=15%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             eeeCC--CCCcccCCCCCcccCccchhhhhccccCC
Q 008724          123 VYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       123 ~y~C~--~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +|.|+  .|       ++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYC-------GKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTC-------CCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCC-------CcccCCHhHHHHHHHHhcCC
Confidence            56665  55       66777777777777666665

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.00  E-value=0.0002  Score=45.01  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=10.7

Q ss_pred             CCcccCccchhhhhccccCC
Q 008724          137 SRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ++.|.....|..|+++|+++
T Consensus         9 ~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            9 EFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             SCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCHHHHHHHHHHHccC
Confidence            55555555555555555544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.00  E-value=0.00029  Score=43.99  Aligned_cols=26  Identities=23%  Similarity=0.668  Sum_probs=24.2

Q ss_pred             CccccC--CCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|+|+  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999985

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.98  E-value=0.00019  Score=44.72  Aligned_cols=20  Identities=10%  Similarity=0.336  Sum_probs=10.7

Q ss_pred             CCcccCccchhhhhccccCC
Q 008724          137 SRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ++.|.....|..|+++|+++
T Consensus         9 ~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            9 DKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCTTTHHHHHHHHHHSC
T ss_pred             CcccCCHHHHHHHHHHhccC
Confidence            55555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.93  E-value=0.00018  Score=44.87  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=16.4

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCREC-------GKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTT-------SCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCC-------CCccCChhHHHHHHHHhcCC
Confidence            4566665       56666666666666666554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.81  E-value=0.0005  Score=43.33  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=15.0

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhh-hccccCC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKH-FSRKHGE  156 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H-~r~H~~e  156 (556)
                      +|.|..|       ++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLC-------NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTT-------CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCccc-------CcccCChHHHHHHHHHHccCC
Confidence            4555555       5555555555555 4555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.76  E-value=0.0005  Score=42.21  Aligned_cols=19  Identities=11%  Similarity=0.277  Sum_probs=10.5

Q ss_pred             CCcccCccchhhhhccccC
Q 008724          137 SRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~  155 (556)
                      ++.|.....|.+|+++|++
T Consensus         8 ~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            8 ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CCBCSSHHHHHHHGGGTCC
T ss_pred             CCcCCCHHHHHHHHHHcCC
Confidence            5555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.00098  Score=51.68  Aligned_cols=52  Identities=13%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCCCcccCccchhhhh-ccccCCcccccccCCccccccccccccccccCCcceecc---CCCccCChhHHHHHHhhh
Q 008724          135 DPSRALGDLTGIKKHF-SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD---CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       135 ~~~k~F~~~s~L~~H~-r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~~gekpy~C~---Cgk~F~~~~~L~~H~~~h  207 (556)
                      .|++.|.....|..|+ +.|.+.+.                     ....++|.|.   |++.+.....|.+|+++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~---------------------~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDF---------------------KHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCC---------------------CCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCccc---------------------CCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3377777777777776 35655431                     0011367773   777777777777777654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0037  Score=48.36  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=42.2

Q ss_pred             cccC--CCCCccCChHHHHHHH-HhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724           83 FLCE--ICNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus        83 y~C~--~Cgk~F~~~~~L~~H~-r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      |.|.  .|++.|.+...|..|+ +.|....       .......|.|.+-+|     ++.+.....|..|++.++
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~-------~~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD-------FKHPMEPLACNWEDC-----DFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC-------CCCSSCCEECCCSSC-----CCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc-------cCCCCCCCEeeCCCC-----cCCCCChHHHHhhccccC
Confidence            4454  5999999999999998 5676110       000123788886655     888888888999988653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=95.86  E-value=0.002  Score=39.93  Aligned_cols=18  Identities=17%  Similarity=0.313  Sum_probs=8.9

Q ss_pred             CCcccCccchhhhhcccc
Q 008724          137 SRALGDLTGIKKHFSRKH  154 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~  154 (556)
                      ++.|.....|.+|+++|+
T Consensus        11 ~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A           11 GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEESSHHHHHHHHGGGT
T ss_pred             cCccCCHHHHHHHHHHhC
Confidence            455555555555554443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.69  E-value=0.0016  Score=57.65  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CCccccCCCCCccCChHHHHHHH--HhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHR--RGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~--r~H~  106 (556)
                      .+++.|.+|+..|.+...+..|.  +.|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~   58 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHA   58 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHH
Confidence            35689999999999999999998  5564

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.40  E-value=0.0059  Score=53.55  Aligned_cols=29  Identities=17%  Similarity=0.404  Sum_probs=15.0

Q ss_pred             cccCCcccccccCCccccccccccccccc
Q 008724          152 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       152 ~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      -|+|+++|.|..|+|.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            34455555555555555555555555543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.97  E-value=0.068  Score=49.07  Aligned_cols=79  Identities=19%  Similarity=0.458  Sum_probs=57.9

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcceecc-CCCccCChh
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRD  198 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~  198 (556)
                      .....|+.-||     ...+ ....|..|.+. =..+++.|+.|+..+ .+..|..|+.. ...+...|. |+..|..+ 
T Consensus        80 ~l~v~C~n~GC-----~~~~-~~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-  150 (170)
T 3hcs_A           80 SLMVKCPNEGC-----LHKM-ELRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-  150 (170)
T ss_dssp             TSEEECCSTTC-----CCEE-EGGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-
T ss_pred             hcccCCCCCCC-----Ccee-cHhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-
Confidence            34567765455     5544 35567778643 235678999999988 66778999976 888999999 99988665 


Q ss_pred             HHHHHHhhhh
Q 008724          199 SFITHRAFCD  208 (556)
Q Consensus       199 ~L~~H~~~h~  208 (556)
                      .|..|..++.
T Consensus       151 ~l~~H~~~~~  160 (170)
T 3hcs_A          151 DKEIHDQNCP  160 (170)
T ss_dssp             GHHHHHTTCC
T ss_pred             HHHhHHHhCc
Confidence            6789998775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.89  E-value=0.017  Score=50.59  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhc
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      ....++++++|.|..|+|.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            345678899999999999999999999998664

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.61  E-value=0.012  Score=51.89  Aligned_cols=74  Identities=16%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhh--ccccCC-cccccccC------Cccccccccccccccc-cCCcceecc-
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHF--SRKHGE-KKWKCEKC------SKKYAVQSDWKAHSKI-CGTREYKCD-  189 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~--r~H~~e-kpy~C~~C------gk~F~~~s~L~~H~r~-~gekpy~C~-  189 (556)
                      .+++.|.+|       ...|.+...+..|.  +.|... +.|.+..+      ++.|...    .+... .+.+.|.|. 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            367899999       89999999999999  566542 55655321      2222211    12223 456789999 


Q ss_pred             CCCccCChhHHHHHHh
Q 008724          190 CGKLFSRRDSFITHRA  205 (556)
Q Consensus       190 Cgk~F~~~~~L~~H~~  205 (556)
                      |++.|.....|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999985

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.70  E-value=0.057  Score=38.76  Aligned_cols=25  Identities=20%  Similarity=0.547  Sum_probs=20.0

Q ss_pred             cceecc-CCCccCChhHHHHHHhhhh
Q 008724          184 REYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       184 kpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .+|.|+ |++.|...+.|++|++.+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            567888 8888888888888888653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.84  E-value=0.095  Score=37.64  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             CccccCCCCCccCChHHHHHHHHhc
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      .+|.|+.|++.|.....|+.||+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6799999999999999999998743

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=88.77  E-value=0.25  Score=38.89  Aligned_cols=60  Identities=30%  Similarity=0.676  Sum_probs=41.2

Q ss_pred             chhhhhccccCCccccc-ccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhh
Q 008724          145 GIKKHFSRKHGEKKWKC-EKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       145 ~L~~H~r~H~~ekpy~C-~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      .|..|+ .+-..++..| ..|+..+. +..|..|+.. ...++..|. |+..|.+. .|..|...+
T Consensus         4 ~l~~H~-~~C~~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~~-~l~~H~~~C   66 (76)
T 2yuc_A            4 GSSGHL-NTCSFNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHEGMC   66 (76)
T ss_dssp             SCSCCC-CCCCCSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCHH-HHHHTTTSC
T ss_pred             HHHHHH-HHCCCcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCHH-HHHHHHhHC
Confidence            455565 3333466778 57887765 4677888885 777888888 98888754 567777554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=86.98  E-value=0.38  Score=43.93  Aligned_cols=58  Identities=19%  Similarity=0.314  Sum_probs=42.4

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhccccCCcccccccCCccccccccccccccc-cCCcce
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  186 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy  186 (556)
                      .-++..|+.|       +..+ .+..|..|....-..+...|..|+..|.. ..|..|..+ .|+.++
T Consensus       107 ~~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          107 EFALMDCPQC-------QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TTSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             CceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            3466788866       7766 66779999987777888999999998755 567889888 676654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	556
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 156 EKKWKCEKCSKKYAVQSDWKAHSKICGT-REYKCD-CGKLFSRRDSFITHR 204
           +K + C+ C K +  +S    H  +    R Y C  CGK F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 156 EKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKCD 189
            K + C+ C K ++       H K   T E  +KC 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	556
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.34
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.27
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.79
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.72
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.66
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.57
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.57
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.57
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.52
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.5
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.47
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.46
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.46
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.46
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.42
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.4
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.35
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.34
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.31
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.28
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.23
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.14
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.06
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.04
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.0
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.95
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.91
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.91
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.84
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.83
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.77
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.71
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.67
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.64
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.63
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.11
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.8
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.79
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.67
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.66
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.58
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.4
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.34
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.3
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.25
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.21
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.18
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.05
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.04
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.03
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.91
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.86
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.75
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.58
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.56
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.55
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.49
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.32
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.23
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.22
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.2
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.98
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.78
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.74
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.68
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.66
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.56
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.28
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.27
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.89
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.78
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.71
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.43
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.95
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.59
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	91.94
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.85
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.88
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.76
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.43
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	89.78
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	88.93
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	87.99
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	86.96
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	85.63
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.5
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.31
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	82.63
d1y0jb1	36	U-shaped transcription factor, different fingers {	82.61
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	80.84
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.32
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.06

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.9e-14  Score=103.13  Aligned_cols=51  Identities=29%  Similarity=0.725  Sum_probs=28.5

Q ss_pred             CcccccccCCccccccccccccccc-cCCcceecc-CCCccCChhHHHHHHhhh
Q 008724          156 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       156 ekpy~C~~Cgk~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      ||+|+|+ ||+.|..+..|.+|+++ .+++||.|. |++.|..+..|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3555553 55555555555555555 555555555 555555555555555543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.8e-13  Score=97.61  Aligned_cols=53  Identities=17%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCCCCcccCCCCCcccCccchhhhhccc
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  153 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H  153 (556)
                      +|+|+|+ ||+.|.....|..|+++|.             ++++|.|.+|       ++.|.....|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            4566663 6666666666666666666             6666666666       66666666666666655

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4e-10  Score=77.22  Aligned_cols=36  Identities=22%  Similarity=0.612  Sum_probs=28.4

Q ss_pred             hhhccccCCcccccccCCccccccccccccccc-cCC
Q 008724          148 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  183 (556)
Q Consensus       148 ~H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~-~ge  183 (556)
                      +|+++|+++|||+|++|||.|...++|.+|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            577888888888888888888888888888887 554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.4e-09  Score=73.43  Aligned_cols=37  Identities=27%  Similarity=0.635  Sum_probs=33.6

Q ss_pred             CCCccccCCCCCccCChHHHHHHHH-hcCCCchhhcccccccCCceeeCCC
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r-~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      .+|+|+|++|||.|.+..+|++|++ +|.             ++|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4689999999999999999999976 798             999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=9.1e-10  Score=74.92  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             hhccccCCcccccccCCccccccccccccccc
Q 008724          149 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       149 H~r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.|+|++||||+|.+|+|.|.++++|.+|+++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhc
Confidence            55666666666666666666666666666655

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.6e-09  Score=73.18  Aligned_cols=37  Identities=19%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhc-cccCCccccccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK  163 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r-~H~~ekpy~C~~  163 (556)
                      .+|||+|.+|       ++.|.....|.+|++ +|++||||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3678888888       888888888888875 688888888864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.5e-09  Score=73.29  Aligned_cols=30  Identities=27%  Similarity=0.532  Sum_probs=19.2

Q ss_pred             ccccCCcccccccCCccccccccccccccc
Q 008724          151 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       151 r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |+|+|||||+|.+|+|+|..++.|.+|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            456666666666666666666666666666

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.9e-08  Score=68.61  Aligned_cols=35  Identities=31%  Similarity=0.584  Sum_probs=33.3

Q ss_pred             cCccccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           72 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        72 ~~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+...|+++|+|+|++|||.|...++|.+|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            56788999999999999999999999999999998

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.7e-09  Score=71.30  Aligned_cols=30  Identities=23%  Similarity=0.500  Sum_probs=19.3

Q ss_pred             ccccCCcccccccCCccccccccccccccc
Q 008724          151 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       151 r~H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |+|+|||||+|++|+|.|.++++|++|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            456666666666666666666666666544

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.8e-09  Score=69.62  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=14.7

Q ss_pred             ccCCcccccccCCccccccccccccccc
Q 008724          153 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       153 H~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |+++|||+|.+|+|+|..++.|.+|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            4455555555555555555555555554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=6.7e-09  Score=69.35  Aligned_cols=27  Identities=19%  Similarity=0.608  Sum_probs=11.1

Q ss_pred             cCCcccccccCCccccccccccccccc
Q 008724          154 HGEKKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       154 ~~ekpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      +|||||+|.+|+|.|.++++|++|+++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCccccCCCCCCcccChHHHHHHccc
Confidence            334444444444444444444444433

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.2e-08  Score=65.10  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=29.6

Q ss_pred             ccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           76 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        76 ~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .|+++|||+|.+|||.|.....|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            4789999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=3.6e-08  Score=65.73  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=28.8

Q ss_pred             cCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           77 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        77 ~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++++|||+|++|+|.|.+..+|++|+++|.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            678999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.3e-08  Score=65.99  Aligned_cols=32  Identities=22%  Similarity=0.549  Sum_probs=30.5

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.|+++|||+|++|||.|.....|+.|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            46899999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=5.1e-08  Score=66.03  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=31.9

Q ss_pred             CccccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           73 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        73 ~~~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.+.|+++|||+|++|+|.|.++.+|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4678999999999999999999999999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.4e-08  Score=72.53  Aligned_cols=40  Identities=20%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             cchhhhhccccCCccccccc--CCccccccccccccccc-cCCc
Q 008724          144 TGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTR  184 (556)
Q Consensus       144 s~L~~H~r~H~~ekpy~C~~--Cgk~F~~~s~L~~H~r~-~gek  184 (556)
                      ..|.+|++ |+++|||+|.+  |+|.|.++++|++|+++ +|||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            35666774 88888888876  88888888888888888 6654

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.5e-08  Score=67.01  Aligned_cols=35  Identities=26%  Similarity=0.717  Sum_probs=31.0

Q ss_pred             eeCCCCCcccCCCCCcccCccchhhhhccccCCccccccc
Q 008724          124 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  163 (556)
Q Consensus       124 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy~C~~  163 (556)
                      |.|++.+|     ++.|.++..|++|+++|+++|||+|++
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            77887655     999999999999999999999999974

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.40  E-value=8e-08  Score=61.34  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=25.2

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |||+|++|+|.|.+..+|++|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=5.2e-08  Score=61.56  Aligned_cols=27  Identities=37%  Similarity=0.796  Sum_probs=25.8

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|||+|.+|+|.|.+..+|.+|+++|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.2e-08  Score=59.85  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=24.6

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |||+|++|||.|.+.+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.1e-07  Score=60.61  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=25.2

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|.|++|||.|.+.++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.1e-07  Score=60.13  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=22.4

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      ||||+|. |+|.|.+++.|.+|+++|.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            6889998 9999999999999988874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-07  Score=63.20  Aligned_cols=32  Identities=16%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             cccCCCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           75 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        75 ~~~~~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +.|+++|||+|++|++.|....+|++|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            46899999999999999999999999976544

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.3e-07  Score=63.43  Aligned_cols=33  Identities=30%  Similarity=0.669  Sum_probs=30.8

Q ss_pred             cccCC--CCCccCChHHHHHHHHhcCCCchhhcccccccCCceeeCCC
Q 008724           83 FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  128 (556)
Q Consensus        83 y~C~~--Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y~C~~  128 (556)
                      |.|++  |+|.|.+..+|++|+++|+             ++|||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            78987  9999999999999999998             999999974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.9e-07  Score=57.63  Aligned_cols=24  Identities=42%  Similarity=0.913  Sum_probs=21.3

Q ss_pred             cceecc-CCCccCChhHHHHHHhhh
Q 008724          184 REYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       184 kpy~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |||+|. |||.|.+++.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            689998 999999999999999887

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.23  E-value=1.6e-07  Score=59.94  Aligned_cols=29  Identities=28%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      |||.|++|       ++.|...+.|++|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            46667666       677777777777777776664

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.1e-07  Score=58.46  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=18.1

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      |||.|++|       ++.|..++.|.+|+++|++||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            45666666       666666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.6e-07  Score=57.84  Aligned_cols=31  Identities=19%  Similarity=0.518  Sum_probs=25.6

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      |||.|++.+|     ++.|...++|++|+++|++||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5788877655     889999999999999888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=1.6e-07  Score=66.86  Aligned_cols=35  Identities=17%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             ccCCceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          118 VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       118 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      +.++++|.|.+-+|     ++.|...+.|.+|+++|++||
T Consensus        13 h~gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            34999999998333     999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=55.33  Aligned_cols=26  Identities=35%  Similarity=0.726  Sum_probs=25.0

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|+|++  |+|.|.+..+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899999  9999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-06  Score=56.13  Aligned_cols=30  Identities=27%  Similarity=0.526  Sum_probs=23.5

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      |||+|++-+|     ++.|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            5788887544     88888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.8e-06  Score=55.29  Aligned_cols=26  Identities=42%  Similarity=0.738  Sum_probs=24.7

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |||+|++  |+|.|.+..+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899988  9999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-06  Score=56.48  Aligned_cols=30  Identities=17%  Similarity=0.406  Sum_probs=23.7

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      |||+|++-+|     +++|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            5788887555     88888888888888888875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=3.6e-06  Score=51.21  Aligned_cols=26  Identities=31%  Similarity=0.703  Sum_probs=22.2

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      ||||.|+ ||+.|.+++..++|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            6889998 9999999999999988873

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=4.4e-06  Score=54.16  Aligned_cols=27  Identities=30%  Similarity=0.815  Sum_probs=25.7

Q ss_pred             CCccccCC--CCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|.|++  |+|.|.+..+|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            58999988  9999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.1e-06  Score=53.53  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.2

Q ss_pred             CccccC--CCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |||.|+  .|+|.|.+..+|++|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            589996  59999999999999999998

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.2e-06  Score=53.00  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=24.3

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |||+|++  |||.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999984

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.5e-06  Score=48.19  Aligned_cols=25  Identities=40%  Similarity=0.800  Sum_probs=23.5

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|+.|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            4789999999999999999999996

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=3.3e-06  Score=53.50  Aligned_cols=29  Identities=24%  Similarity=0.698  Sum_probs=23.3

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      |||+|++.||     ++.|.+.+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            5788888766     8888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=7.1e-06  Score=53.16  Aligned_cols=30  Identities=20%  Similarity=0.503  Sum_probs=19.8

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      +|||.|++.||     ++.|.+.++|++|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            45677766554     6777777777777776654

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.1e-05  Score=49.02  Aligned_cols=27  Identities=30%  Similarity=0.682  Sum_probs=25.4

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=8.6e-06  Score=51.53  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=24.5

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|+|++  |+|.|.+..+|++|+++|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899988  9999999999999999996

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.4e-06  Score=51.33  Aligned_cols=28  Identities=29%  Similarity=0.655  Sum_probs=19.0

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      |||.|++.||     +|.|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            4677776555     777777777777777664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.6e-05  Score=49.17  Aligned_cols=32  Identities=34%  Similarity=0.638  Sum_probs=28.9

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcCCCchhhcccccccCCcee
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVY  124 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~~p~~~~~~~~~~~~~k~y  124 (556)
                      .+...|+.|||.|..-..|.+|...|.             ++|||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs-------------~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccC-------------CCCCC
Confidence            356789999999999999999999998             88887

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=7e-05  Score=43.99  Aligned_cols=19  Identities=16%  Similarity=0.364  Sum_probs=10.9

Q ss_pred             CCcccCccchhhhhccccC
Q 008724          137 SRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus       137 ~k~F~~~s~L~~H~r~H~~  155 (556)
                      ++.|+++..|+.|+|.|+|
T Consensus         8 ~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           8 GKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             TBCCCCHHHHHHHGGGCCC
T ss_pred             hhHhcchhHHHHHhhccCC
Confidence            5555555556555555543

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00019  Score=44.14  Aligned_cols=27  Identities=26%  Similarity=0.752  Sum_probs=25.6

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|+|.|++|+..|.++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999999999996

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0005  Score=41.52  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=23.9

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|.|++||......+-|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            5899999999999999999999998

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00034  Score=46.39  Aligned_cols=29  Identities=41%  Similarity=0.864  Sum_probs=25.4

Q ss_pred             cCCcceecc-CCCccCChhHHHHHHhhhhc
Q 008724          181 CGTREYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       181 ~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      +|-|||.|. |+|.|-.++++.+|...|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            467999999 99999999999999988764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00028  Score=43.35  Aligned_cols=26  Identities=35%  Similarity=0.712  Sum_probs=20.0

Q ss_pred             Ccceecc-CCCccCChhHHHHHHhhhh
Q 008724          183 TREYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       183 ekpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      ||||.|. |..+|.+++-+..|.+.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            5777887 8888888887777877765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00056  Score=40.89  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=23.3

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4689999999999999999999997

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00027  Score=43.41  Aligned_cols=29  Identities=38%  Similarity=0.817  Sum_probs=21.5

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  155 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~  155 (556)
                      |||.|...||     +++|...+.|++|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5677777766     7778888888888776654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00029  Score=44.29  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCccc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  159 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ekpy  159 (556)
                      +...|+.|       ++.|.....|.+|...|++||||
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCC
Confidence            34567777       77777777777777777777776

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00053  Score=42.06  Aligned_cols=25  Identities=24%  Similarity=0.551  Sum_probs=21.3

Q ss_pred             cceecc---CCCccCChhHHHHHHhhhh
Q 008724          184 REYKCD---CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       184 kpy~C~---Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |||.|.   |+|+|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            688895   9999999999999998765

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00054  Score=41.37  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.5

Q ss_pred             eeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          124 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       124 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      |.|++|       +......+-|++|+|.|+++|
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            789888       888888899999999999875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.34  E-value=0.00091  Score=38.78  Aligned_cols=23  Identities=26%  Similarity=0.736  Sum_probs=19.5

Q ss_pred             eecc-CCCccCChhHHHHHHhhhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |+|. |.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            6788 8889999999999988874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.30  E-value=0.001  Score=40.02  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.5

Q ss_pred             cceecc---CCCccCChhHHHHHHhhh
Q 008724          184 REYKCD---CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       184 kpy~C~---Cgk~F~~~~~L~~H~~~h  207 (556)
                      .||+|.   |+++|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589995   999999999999999887

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.25  E-value=0.0015  Score=37.86  Aligned_cols=24  Identities=29%  Similarity=0.778  Sum_probs=22.7

Q ss_pred             cccCCCCCccCChHHHHHHHHhcC
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|..|.+.|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00095  Score=39.87  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=21.3

Q ss_pred             eeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          124 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       124 y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +.|.+|       ++.|...+.|++|+..|++|
T Consensus         3 hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            567777       88888888888888888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00089  Score=40.19  Aligned_cols=29  Identities=14%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      ++||+|..|       ...-...+.|..|.|.|+|+
T Consensus         1 erpfkcqlc-------sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQIC-------PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSS-------SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeec-------ccccCCchheEEeeecccCc
Confidence            467777777       66666777777777777763

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0019  Score=38.39  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|+|..|...-...+.|+.|.|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=42.89  Aligned_cols=26  Identities=23%  Similarity=0.552  Sum_probs=23.4

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHh
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRG  104 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~  104 (556)
                      +-|||.|.+|+|.|-++..+.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            56899999999999999999999643

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0017  Score=38.61  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             cceecc-CCCccCChhHHHHHHhhhh
Q 008724          184 REYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       184 kpy~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |||+|. |...-...++|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            789998 9999999999999998873

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.99  E-value=0.0024  Score=41.91  Aligned_cols=27  Identities=26%  Similarity=0.587  Sum_probs=25.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .+.|+|.+|+|.|.+-..|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999999997

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0026  Score=37.41  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=22.1

Q ss_pred             ccCCCCCccCChHHHHHHHHhcC
Q 008724           84 LCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        84 ~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +|+.|.|.|.++..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999998

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.86  E-value=0.002  Score=38.74  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=22.5

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhc
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H  105 (556)
                      .+|+|+.  |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4799965  999999999999999887

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0027  Score=41.44  Aligned_cols=27  Identities=22%  Similarity=0.680  Sum_probs=24.7

Q ss_pred             CCcceecc---CCCccCChhHHHHHHhhhh
Q 008724          182 GTREYKCD---CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       182 gekpy~C~---Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .+|||.|.   |+.+|.+.+.|..|++.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999994   9999999999999999986

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.58  E-value=0.00086  Score=41.51  Aligned_cols=22  Identities=41%  Similarity=0.907  Sum_probs=14.4

Q ss_pred             ceecc-CCCccCChhHHHHHHhh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRAF  206 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~~  206 (556)
                      ||.|. |++.|.+++-|.+|..+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            56666 66666666666666544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.56  E-value=0.003  Score=39.04  Aligned_cols=23  Identities=13%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             ccccccCCccccccccccccccc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ||.|.+|++.|.+++-|.+|..+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            79999999999999999999765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0019  Score=37.97  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             eCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          125 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       125 ~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      .|+.|       .+.|.++..|+.|.|.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            46666       888888888888888888875

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.00088  Score=40.54  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=10.0

Q ss_pred             ceecc-CCCccCChhHHHHHHhh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRAF  206 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~~  206 (556)
                      ||+|+ |...-.+.++|.+|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            44444 44444444444444443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0055  Score=36.68  Aligned_cols=27  Identities=30%  Similarity=0.642  Sum_probs=25.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +++|+|..|...-+..+.|..|.|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            579999999999999999999999997

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0014  Score=39.48  Aligned_cols=21  Identities=24%  Similarity=0.665  Sum_probs=10.0

Q ss_pred             ceecc-CCCccCChhHHHHHHh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRA  205 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~  205 (556)
                      ||.|. |...|.++.+|.+|++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            34444 4444444444444443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0019  Score=39.16  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=10.9

Q ss_pred             ccccccCCccccccccccccccc
Q 008724          158 KWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       158 py~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      ||.|.+|..+....++|+.|+++
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            44444444444444444444444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0045  Score=38.21  Aligned_cols=29  Identities=28%  Similarity=0.559  Sum_probs=22.8

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhh-ccccC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHG  155 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~-r~H~~  155 (556)
                      |||.|.+.||     .|+|...+.-.+|+ |+|..
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccC
Confidence            5788888776     88888888888886 77764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0066  Score=36.55  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=22.0

Q ss_pred             ccccCCCCCccCChHHHHHHHHhc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      ||.|..|+..|.++.+|..|++.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999998754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.78  E-value=0.0043  Score=37.44  Aligned_cols=30  Identities=27%  Similarity=0.592  Sum_probs=25.9

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +||.|.+-||     .|.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788888877     99999999999999888875

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0053  Score=37.87  Aligned_cols=25  Identities=28%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             cceecc---CCCccCChhHHHHHH-hhhh
Q 008724          184 REYKCD---CGKLFSRRDSFITHR-AFCD  208 (556)
Q Consensus       184 kpy~C~---Cgk~F~~~~~L~~H~-~~h~  208 (556)
                      |||.|.   |.|.|+..+.-.+|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            688885   889999888888887 6653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.011  Score=35.40  Aligned_cols=27  Identities=33%  Similarity=0.776  Sum_probs=24.8

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +..|.|..|...|+++-.|+.|+-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            456999999999999999999999987

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.0047  Score=37.12  Aligned_cols=29  Identities=17%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             CceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          121 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       121 ~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      +..|.|..|       ...|.++-.|+.||..|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            457888888       88898888899999888875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.56  E-value=0.01  Score=35.10  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             ccccCCCCCccCChHHHHHHHHh
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRG  104 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~  104 (556)
                      +|+|..|||.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999999999643

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.012  Score=35.39  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=22.2

Q ss_pred             cccccccCCccccccccccccccc
Q 008724          157 KKWKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       157 kpy~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |||+|.+|....++.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            689999999999999999999875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.014  Score=35.27  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CccccCCCCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      |+|+|.+|...-...++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            68999999999999999999988754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.89  E-value=0.011  Score=35.57  Aligned_cols=26  Identities=35%  Similarity=0.677  Sum_probs=23.3

Q ss_pred             CccccCC--CCCccCChHHHHHHHHhcC
Q 008724           81 NRFLCEI--CNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        81 k~y~C~~--Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ++|.|.+  |.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5788965  9999999999999998886

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.0091  Score=38.01  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=25.0

Q ss_pred             eeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          123 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       123 ~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      .|.|.+-+|  ..-++.|..+..|..|+|.|+||
T Consensus         2 ~y~C~W~~C--~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCC--CCCCCcchhHHHHHHHHhhcCCC
Confidence            477777766  33356799999999999999986

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.016  Score=36.49  Aligned_cols=24  Identities=38%  Similarity=0.983  Sum_probs=21.4

Q ss_pred             ceecc-CCCccCChhHHHHHHhhhh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .|.|. |+|.|.++..+.+|...|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            58999 9999999999999988774

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.43  E-value=0.021  Score=33.73  Aligned_cols=21  Identities=33%  Similarity=1.002  Sum_probs=16.7

Q ss_pred             ceecc-CCCccCChhHHHHHHh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRA  205 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~  205 (556)
                      ||+|. |||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            57888 8888888888888864

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.014  Score=37.96  Aligned_cols=30  Identities=17%  Similarity=0.503  Sum_probs=26.1

Q ss_pred             CCceeeCCCCCcccCCCCCcccCccchhhhhcccc
Q 008724          120 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  154 (556)
Q Consensus       120 ~~k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~  154 (556)
                      .+|||.|...||     +.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            478999998888     999999999999988775

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=0.036  Score=31.91  Aligned_cols=21  Identities=29%  Similarity=0.797  Sum_probs=16.0

Q ss_pred             ceecc-CCCccCChhHHHHHHh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRA  205 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~  205 (556)
                      ||+|. |...|-.+..|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            67787 8888887777777764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.94  E-value=0.032  Score=36.40  Aligned_cols=29  Identities=14%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCCc
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  157 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~ek  157 (556)
                      +.|+|.+|       ++.|.+-..|--|++.|..++
T Consensus         4 r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            45777777       777777777777777776543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.055  Score=36.84  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=24.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHHhcC
Q 008724           80 TNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        80 ~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      ...|.|-.|||.|.....|+.|...|.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            346899999999999999999998885

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.068  Score=30.72  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=20.5

Q ss_pred             ccccCCCCCccCChHHHHHHHH
Q 008724           82 RFLCEICNKGFQRDQNLQLHRR  103 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r  103 (556)
                      +|+|..|...|-.+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999963

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.76  E-value=0.073  Score=30.69  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             cccCCCCCccCChHHHHHHHHhc
Q 008724           83 FLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        83 y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      |.|++|-|.|.++.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            88999999999999999997653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.064  Score=33.68  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.1

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .|.|..|||.|.++..+.+|-....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            5899999999999999999976554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.1  Score=30.81  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=21.6

Q ss_pred             ccccCCCCCccCChHHHHHHHHhc
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGH  105 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H  105 (556)
                      +|.|+.|+....+++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            589999999999999999998753

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.14  Score=30.34  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             ccccCCCCCccCChHHHHHHHHhcC
Q 008724           82 RFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        82 ~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +-+|..|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4589999999999999999999995

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.035  Score=32.85  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=10.9

Q ss_pred             cccccCCccccccccccccccc
Q 008724          159 WKCEKCSKKYAVQSDWKAHSKI  180 (556)
Q Consensus       159 y~C~~Cgk~F~~~s~L~~H~r~  180 (556)
                      |.|+.|+-...++++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4455555555555555555443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.96  E-value=0.2  Score=28.81  Aligned_cols=21  Identities=38%  Similarity=0.831  Sum_probs=13.3

Q ss_pred             eecc-CCCccCChhHHHHHHhh
Q 008724          186 YKCD-CGKLFSRRDSFITHRAF  206 (556)
Q Consensus       186 y~C~-Cgk~F~~~~~L~~H~~~  206 (556)
                      |.|. |-|.|.+++++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5566 66666666666666654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.2  Score=34.01  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=22.5

Q ss_pred             cceecc-CCCccCChhHHHHHHhhhhc
Q 008724          184 REYKCD-CGKLFSRRDSFITHRAFCDV  209 (556)
Q Consensus       184 kpy~C~-Cgk~F~~~~~L~~H~~~h~~  209 (556)
                      -.|.|. |+|.|.....|+.|...|-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            357899 99999999999999998853

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.50  E-value=0.088  Score=32.07  Aligned_cols=30  Identities=30%  Similarity=0.608  Sum_probs=24.9

Q ss_pred             ceeeCCCCCcccCCCCCcccCccchhhhhccccCC
Q 008724          122 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  156 (556)
Q Consensus       122 k~y~C~~C~C~~~~~~k~F~~~s~L~~H~r~H~~e  156 (556)
                      |.|.|...+|     +..|.....|..|.-.|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            5688887766     88898889999999888875

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.31  E-value=0.37  Score=28.15  Aligned_cols=23  Identities=30%  Similarity=0.752  Sum_probs=19.1

Q ss_pred             eecc---CCCccCChhHHHHHHhhhh
Q 008724          186 YKCD---CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       186 y~C~---Cgk~F~~~~~L~~H~~~h~  208 (556)
                      |.|.   |+|.|.....|+.|+-.|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7784   9999999999999987663

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.41  Score=28.22  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=16.6

Q ss_pred             ceecc-CCCccCChhHHHHHHhhh
Q 008724          185 EYKCD-CGKLFSRRDSFITHRAFC  207 (556)
Q Consensus       185 py~C~-Cgk~F~~~~~L~~H~~~h  207 (556)
                      |-+|. |..+.+.+..|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            45676 777777777777777766

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.61  E-value=0.51  Score=29.18  Aligned_cols=26  Identities=27%  Similarity=0.574  Sum_probs=22.2

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHh
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRG  104 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~  104 (556)
                      ...+|.|.-||..|.+.+.|..|+..
T Consensus         5 kparf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cccceeccccceeecChhHHHhhhhe
Confidence            34579999999999999999999643

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.84  E-value=0.46  Score=29.77  Aligned_cols=28  Identities=14%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             CCCccccCCCCCccCChHHHHHHHHhcC
Q 008724           79 ATNRFLCEICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        79 ~~k~y~C~~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      +...|.|.+|.+.|...+++-+|..+-+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            3467999999999999999999965543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=0.54  Score=27.76  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             ccC--CCCCccCChHHHHHHHHhcC
Q 008724           84 LCE--ICNKGFQRDQNLQLHRRGHN  106 (556)
Q Consensus        84 ~C~--~Cgk~F~~~~~L~~H~r~H~  106 (556)
                      .|+  -|+|.|+..+.+++|+.+|.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            354  49999999999999998873

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.49  Score=27.96  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             ecc---CCCccCChhHHHHHHhhhh
Q 008724          187 KCD---CGKLFSRRDSFITHRAFCD  208 (556)
Q Consensus       187 ~C~---Cgk~F~~~~~L~~H~~~h~  208 (556)
                      .|.   |.|.|...+.+++|+.+|.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            474   9999999999999998873