Query 008725
Match_columns 556
No_of_seqs 331 out of 1732
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00085 ycf24 putative ABC tr 100.0 1E-108 3E-113 896.1 56.6 474 80-556 12-485 (485)
2 PRK11814 cysteine desulfurase 100.0 2E-107 4E-112 887.1 57.0 476 78-556 9-486 (486)
3 TIGR01980 sufB FeS assembly pr 100.0 2E-100 4E-105 826.3 53.7 446 88-547 2-448 (448)
4 COG0719 SufB Cysteine desulfur 100.0 1.3E-91 2.9E-96 750.8 40.0 406 113-553 2-411 (412)
5 PRK10948 cysteine desulfurase 100.0 1.7E-78 3.8E-83 649.9 48.2 389 128-554 28-422 (424)
6 TIGR01981 sufD FeS assembly pr 100.0 3.6E-75 7.9E-80 616.1 41.0 314 221-542 48-364 (366)
7 PF01458 UPF0051: Uncharacteri 100.0 1.1E-56 2.4E-61 446.6 32.6 228 291-527 2-229 (229)
8 PF01458 UPF0051: Uncharacteri 98.3 0.00046 9.9E-09 69.0 26.3 179 266-457 8-191 (229)
9 TIGR01981 sufD FeS assembly pr 97.6 0.02 4.4E-07 61.4 23.7 182 296-486 93-276 (366)
10 TIGR01980 sufB FeS assembly pr 97.5 0.028 6.1E-07 62.0 23.7 180 296-486 174-355 (448)
11 CHL00085 ycf24 putative ABC tr 97.5 0.055 1.2E-06 60.3 25.8 180 296-486 194-383 (485)
12 PRK10948 cysteine desulfurase 97.4 0.034 7.3E-07 60.9 23.2 176 264-453 171-352 (424)
13 PRK11814 cysteine desulfurase 97.3 0.089 1.9E-06 58.6 25.3 181 296-487 195-385 (486)
14 COG0719 SufB Cysteine desulfur 97.0 0.11 2.5E-06 56.6 21.6 164 266-445 165-336 (412)
15 PF00627 UBA: UBA/TS-N domain; 56.7 11 0.00023 26.8 2.4 25 501-525 1-25 (37)
16 COG0829 UreH Urease accessory 51.4 2E+02 0.0044 29.9 11.6 75 267-342 32-109 (269)
17 PF01774 UreD: UreD urease acc 48.2 2.8E+02 0.0061 27.3 12.2 85 293-385 14-101 (209)
18 PF12247 MKT1_N: Temperature d 32.4 37 0.0008 29.4 2.4 33 498-530 8-40 (90)
19 PRK12440 acetate kinase; Revie 30.3 93 0.002 34.1 5.6 70 416-525 199-268 (397)
20 PF14076 DUF4258: Domain of un 28.2 66 0.0014 25.4 3.2 29 501-529 2-30 (73)
21 PF03701 UPF0181: Uncharacteri 22.9 99 0.0021 24.0 2.9 23 503-525 17-39 (51)
22 PF01774 UreD: UreD urease acc 21.9 7.5E+02 0.016 24.2 9.9 79 267-348 19-100 (209)
23 PF08275 Toprim_N: DNA primase 21.7 69 0.0015 29.2 2.3 25 503-528 12-36 (128)
24 PF04256 DUF434: Protein of un 20.3 85 0.0018 25.0 2.2 25 504-528 8-32 (58)
No 1
>CHL00085 ycf24 putative ABC transporter
Probab=100.00 E-value=1.3e-108 Score=896.12 Aligned_cols=474 Identities=69% Similarity=1.143 Sum_probs=446.4
Q ss_pred HHHHhhccccccCCCcccccceeecCCCCCHHHHHHHHcCCCCchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccc
Q 008725 80 IQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMC 159 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~v~~is~~~~eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~ 159 (556)
+.+++ +++| +|+|++.+..+++++|++++++++||+.+.||.||.++|++|++.|.++++|+|.+.+++.|++.++.
T Consensus 12 ~~~~~-~~~~--~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~ 88 (485)
T CHL00085 12 LTKLV-NQPY--KYGFSTLIETERLPKGLNEDIVRLISKKKNEPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDIS 88 (485)
T ss_pred hHHHh-cccc--cCCCCCcchhhhccCCCCHHHHHHHHhhhCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhce
Confidence 46667 7889 99999998889999999999999999999999999999999999999999999988778888888888
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeeceEEeccchhhccccccccCCeEEechHHHHHhCcHH
Q 008725 160 YYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDL 239 (556)
Q Consensus 160 ~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdl 239 (556)
+|+.|.......+|++++.++.++++.+|||+.++.++....++.+|++..++..++++|.++||+|++|++|+++||++
T Consensus 89 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~~Gv~~~~l~~a~~~~~~l 168 (485)
T CHL00085 89 YYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVAVDAVFDSVSIGTTFKEELAKAGVIFCSISEAIQKYPEL 168 (485)
T ss_pred eeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCceEEEEccEEEEeeccchhhcCCeEEEcHHHHHhhhHHH
Confidence 88777543223578899999999999999999998877777778889988888888889999999999999999999999
Q ss_pred HHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEEeecCCcceeeeEEEEECCCCeEEEEeceecCCC
Q 008725 240 VRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSY 319 (556)
Q Consensus 240 v~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~ 319 (556)
+++||++++++++++|+|||+|+|++|+|||||+|+++|+||+++|.+++.+..+++|++|++|+||+++|||+|.++.+
T Consensus 169 v~~yl~~~~~~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~~pl~~~~~~~~~~~~~~~r~lIi~eega~~~iiE~~~s~~~ 248 (485)
T CHL00085 169 IKKYLGSVVPIGDNYFAALNSAVFSDGSFCYIPKDTKCPLELSTYFRINNEESGQFERTLIIAEENSYVSYLEGCTAPQY 248 (485)
T ss_pred HHHHhcccCCCCchHHHHHHHHHcCCeEEEEECCCCcceEEEEEEEeecCCccceeeeEEEEECCCCEEEEEEEeccCCC
Confidence 99999998888899999999999999999999999999999999999876667899999999999999999999999755
Q ss_pred CCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCC
Q 008725 320 DRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDD 399 (556)
Q Consensus 320 ~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~g 399 (556)
...+||++|+||++++||+|+|++||+|+.+...+.++++||.++|+++++++|+++|.++++|++++|+++.+.|.|+|
T Consensus 249 ~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~ 328 (485)
T CHL00085 249 DTNQLHAAVVELIALENAEIKYSTVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDN 328 (485)
T ss_pred CccceEEEEEEEEECCCCEEEEEEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCC
Confidence 57789999999999999999999999997666666678999999999888999999999999999999999999999999
Q ss_pred eEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceec
Q 008725 400 TVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANT 479 (556)
Q Consensus 400 A~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T 479 (556)
|+++++|++++.++|++|++++|+|.||||+|++++|||+.|+|+++|||+|+|.++|++|+|+|+|++||||++|+++|
T Consensus 329 a~~~~~~i~l~~~~Q~~D~~t~v~h~~p~t~S~~~~k~Il~d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~a~~~t 408 (485)
T CHL00085 329 SQGEFYSVALTNNYQQADTGTKMIHIGKNTKSRIISKGISAGKSKNSYRGLVKIGPKALNSRNYSQCDSLLIGNKSQANT 408 (485)
T ss_pred cEEEEEEEEEccCCEEEEeeEEEEEcCCCcEEEEEEEEEECCCCEEEEEEEEEECCCCCCCccceeeceEEEcCCCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHHHhhccccCC
Q 008725 480 YPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 556 (556)
Q Consensus 480 ~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li~~~l~~~vg 556 (556)
+|+|||++|||+|+|||||||||+|||||||||||++++|++|||.||+.+++++||+|.++++.++|+.||+|+||
T Consensus 409 ~P~LeI~adDV~~sHgAtvG~ideeqLFYL~SRGi~e~eA~~Llv~gF~~evi~~ip~e~~~~l~~~i~~~l~~~~~ 485 (485)
T CHL00085 409 FPYIQVQNSTAKIEHEASTSKIGEEQLFYFLQRGINLEEAISLLISGFCKDVFNKLPMEFALEADRLLSLKLEGSVG 485 (485)
T ss_pred cceEEEecCCeeEEEeeccCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999998
No 2
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=100.00 E-value=1.6e-107 Score=887.15 Aligned_cols=476 Identities=67% Similarity=1.132 Sum_probs=440.8
Q ss_pred hHHHHHhhccccccCCCcccccceeecCCCCCHHHHHHHHcCCCCchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccc
Q 008725 78 DKIQEILRNRDYDKKFGFNWDIDSVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQD 157 (556)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~v~~is~~~~eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~ 157 (556)
+...+.+ ++.| +|+|++.+..++++++++++++++||+.++||+||.++|++||+.|.++++|+|++.+++.|++.+
T Consensus 9 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~ 85 (486)
T PRK11814 9 DDVKELV-NQEY--KYGFVTDIETDELPKGLNEDVVRLISAKKNEPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQD 85 (486)
T ss_pred HHHHHHh-ccCc--cCCCCCchhhhhcccCCCHHHHHHHHhhcCCcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCccc
Confidence 3346666 6779 999999988899999999999999999999999999999999999999999999887777777777
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccc--cceeeceEEeccchhhccccccccCCeEEechHHHHHh
Q 008725 158 MCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRL--ANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIRE 235 (556)
Q Consensus 158 ~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l--~~v~V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~ 235 (556)
+.+|..|.......+|++++.++.++++.+|+|+.+.+++ +..+++.+|++..++..++++|.++||+|++|++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~ls~~l~~~GV~~~~l~~a~~~ 165 (486)
T PRK11814 86 ISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGREVAVDAVFDSVSVATTFKEKLAEAGVIFCSISEAIQE 165 (486)
T ss_pred ceeeeccccccccCCcccCCHHHHHHHHhcCCCHHHHhhhhccccceEEEEcCeEEEeccCchhhcCCeEEEcHHHHhhh
Confidence 7777766432112468889999999999999997666444 22456788888878888888999999999999999999
Q ss_pred CcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEEeecCCcceeeeEEEEECCCCeEEEEecee
Q 008725 236 HPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCT 315 (556)
Q Consensus 236 ~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~ 315 (556)
||+++++||++++++++|+|+|||+|+|++|+|||||+|+++|+||+++|.+++.+..+++|++|++|+||+++|||+|.
T Consensus 166 ~~~lv~~~l~~~~~~~~~~f~aLn~A~~~~G~fi~Vp~gv~~~~pi~~~~~~~~~~~~~~~r~lIi~ee~S~~~iiE~~~ 245 (486)
T PRK11814 166 HPELVKKYLGSVVPVNDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIIADEGSYVSYLEGCT 245 (486)
T ss_pred hHHHHHHHhccCCCCCchHHHHHHHhhcCCeEEEEECCCCceeEEEEEEEeecCCCcceeeEEEEEECCCCEEEEEEEec
Confidence 99999999999888889999999999999999999999999999999999998766789999999999999999999999
Q ss_pred cCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEE
Q 008725 316 APSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVL 395 (556)
Q Consensus 316 ~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L 395 (556)
++.....++|++++|+++++||+|+|++||+|+.++..+.++++||.++|++|++++|+++|+.+.+|++++|+++.+.|
T Consensus 246 s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~~~~L 325 (486)
T PRK11814 246 APMRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYPSCIL 325 (486)
T ss_pred CCCCCccceeeEEEEEEECCCCEEEEEEEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeecceEE
Confidence 87445678999999999999999999999999777655566799999999988999999999999999999999999999
Q ss_pred ecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCc
Q 008725 396 EGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTA 475 (556)
Q Consensus 396 ~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A 475 (556)
.|+||.++++|++++.++|++|++++|+|.||||+|++++|||+.|+|++||||+|+|.++|++|+|+|+|++||||++|
T Consensus 326 ~G~ga~~~~~gi~l~~~~q~~D~~t~v~H~~p~t~S~~~~k~V~~d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~A 405 (486)
T PRK11814 326 RGDNSVGEFYSVALTNGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQC 405 (486)
T ss_pred ecCCcEEEEEeEEeccCCEEEEeeEEEEEcCCCcEEEEEEEEEEcCCcEEEEEEEEEECCCCcCCccceeeeeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHHHhhccccC
Q 008725 476 AANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSV 555 (556)
Q Consensus 476 ~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li~~~l~~~v 555 (556)
+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||.||+.+++++||+|.++|++++|+++++|+|
T Consensus 406 ~~~t~P~LeI~adDV~~sHgATvG~ideeqLFYL~SRGi~e~eA~~Llv~gF~~evi~~ip~e~~~e~~~~i~~~~~~~~ 485 (486)
T PRK11814 406 GAHTFPYIEVKNNSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELPMEFAVEAQKLLAISLEGSV 485 (486)
T ss_pred ceEecceEEEecCCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008725 556 G 556 (556)
Q Consensus 556 g 556 (556)
|
T Consensus 486 ~ 486 (486)
T PRK11814 486 G 486 (486)
T ss_pred C
Confidence 8
No 3
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=1.8e-100 Score=826.28 Aligned_cols=446 Identities=48% Similarity=0.817 Sum_probs=407.3
Q ss_pred ccccCCCcccccc-eeecCCCCCHHHHHHHHcCCCCchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccccccCCCC
Q 008725 88 DYDKKFGFNWDID-SVTIPKGLTKETIHLISSLKEEPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKK 166 (556)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~gl~~~~v~~is~~~~eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~~p~~ 166 (556)
+| +|||.+.+. .++++++++++.++++|+.++||+||.++|++||+.|.++++|+|+ .++..|++.++.+|..+..
T Consensus 2 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ep~wl~~~R~~A~~~~~~l~~P~~~-~~~e~w~~t~l~~~~~~~~ 78 (448)
T TIGR01980 2 EY--KYGFHDEDKYAYETEKGLTEEVVEEISEKKGEPDWMLDFRLRALELFEKMPMPTWG-PDLSGIDYEDIVYYSKPDK 78 (448)
T ss_pred Cc--cCCCcCCccchhhcCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCC-CCCCCcCccccEEeecccc
Confidence 58 999999977 5999999999999999999999999999999999999999999984 4555555555556665543
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeeceEEeccchhhccccccccCCeEEechHHHHHhCcHHHHhhhcc
Q 008725 167 KPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGR 246 (556)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~ 246 (556)
... .+|++++.++.+.++.+|+|+.++..+. ++..+|++..++..++++|.++||+|++|++|+++||+++++||++
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~ls~~l~~~GV~~~~l~~a~~~~~~~v~~~l~~ 155 (448)
T TIGR01980 79 KKA-TSWDEVPDEIKDTFEKLGIPEAERKALA--GVGAQYDSEVIYHNIKEDLEEKGVIFCDMDTALKEYPDLVKEYFMS 155 (448)
T ss_pred ccc-CChhhCCHHHHHHHHHcCCChHHhhhcC--ceEEEEcCEEEEEcchhHHhcCCEEEecHHHHHHhCHHHHHHHHhc
Confidence 211 4678899999999999999976654322 2345556555556677788899999999999999999999999999
Q ss_pred ccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEEeecCCcceeeeEEEEECCCCeEEEEeceecCCCCCcceeE
Q 008725 247 VVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHA 326 (556)
Q Consensus 247 ~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~ 326 (556)
+++.++|+|+|||+|+|++|+|||||+|++++.||+++|.+++.+..+++|++|++|+||++++||+|.++.....++|+
T Consensus 156 ~~~~~~~~f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~~~~~~~~~~~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~ 235 (448)
T TIGR01980 156 VVPPSDNKFAALNGAVWSGGSFVYVPKGVRVDMPLQTYFRINSENTGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHA 235 (448)
T ss_pred cCCCcccHHHhHhhcccCceEEEEECCCCEeCCCEEEEEEEcCCccceeeeEEEEECCCCEEEEEEeccccCCCccceEE
Confidence 88888999999999999999999999999999999999999887778999999999999999999999987545678999
Q ss_pred eEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEE
Q 008725 327 AVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYS 406 (556)
Q Consensus 327 ~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~g 406 (556)
+++|+++++||+|+|++||+|+.+ ++||.++|+ .++++|+++|+.+.+|++++|+++.+.|.|+||.++++|
T Consensus 236 ~v~Ei~v~~~A~v~~~~iq~~~~~-------~~~~~~~~~-~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~ 307 (448)
T TIGR01980 236 AVVELIVKEDARVRYSTVQNWSKN-------VYNLVTKRA-LVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLS 307 (448)
T ss_pred EEEEEEEcCCCEEEEEEEeecCCC-------eEEEEEEEE-EEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEE
Confidence 999999999999999999999754 789998886 667999999999999999999999999999999999999
Q ss_pred EEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEE
Q 008725 407 VALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVK 486 (556)
Q Consensus 407 v~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~ 486 (556)
++++.++|++|+++.|+|.||+|+|++++|||+.|+|++||||+|+|.++|++|+|+|+|++||||++|+++|+|.|||+
T Consensus 308 ~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~d~s~~vf~G~i~v~~~A~~t~a~q~~~~LlLs~~a~~~t~P~LeI~ 387 (448)
T TIGR01980 308 IAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTYRGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIF 387 (448)
T ss_pred EEecCCCEEEEcceEEEEeCCCcEEEEEEEEEECCCcEEEEEEEEEECCCCCCCccEEEEeEEEECCCcceEecceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHH
Q 008725 487 NPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLM 547 (556)
Q Consensus 487 ~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li 547 (556)
+|||+|+||||||+||+|||||||||||++++|++|||+||+.+++++||.|+..|++++|
T Consensus 388 ~dDV~~sHgAtvG~ideeqLFYL~SRGi~~~eA~~Lii~gF~~evi~~ip~e~~~e~~~~~ 448 (448)
T TIGR01980 388 NDTVDVEHEATVSKISEEQLFYLMSRGLSEEDARAMIVRGFVEPITKELPMEYAVELNRLI 448 (448)
T ss_pred cCCeEEEeeeeccCCCHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhCChHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 4
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-91 Score=750.84 Aligned_cols=406 Identities=44% Similarity=0.761 Sum_probs=377.2
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHhHhCCCC-CCCC-CCCCCCCccccccccCCCCCCCCCCCCCCCHHHHHHHHhcCCC
Q 008725 113 IHLISSLKEEPAWMLEYRLSAFEKFLKMKEP-NWSD-NRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVP 190 (556)
Q Consensus 113 v~~is~~~~eP~wl~~~R~~A~~~f~~~~~P-~w~~-~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip 190 (556)
++.||+++.||+||+++|+++++.|.++++| .|.. ..+..+++....+|..|.... ++++|+|
T Consensus 2 i~~~s~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 66 (412)
T COG0719 2 IELISARKDEPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPGEAS---------------FKRLGIP 66 (412)
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCCccc---------------ccccCCC
Confidence 6889999999999999999999999999999 7876 344455656666676665421 6789999
Q ss_pred chhcccccceeeceEEeccchhhccccccccCCeEEechHHHHHhCcHHHHhhhcc-ccCCCChHHHHHHHhcCCCCeEE
Q 008725 191 LNEQNRLANVAVDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGR-VVPSEDNYYAALNAAVFSDGSFC 269 (556)
Q Consensus 191 ~~e~~~l~~v~V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~-~v~~~d~~faALn~A~~~~G~fI 269 (556)
+.++ +..++++..++..+...+.++||+|+++ +++||+++++|+++ ++++.+++|+|||+|+|++|+||
T Consensus 67 ~~e~-------~~~~~~~~~~~~~~~~~~~~~gv~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~aL~~a~~~~g~fi 136 (412)
T COG0719 67 DAEE-------VLAQCDSVVVYHAVSGELAPEGVIVEDI---LKEHPDLVKKYFGKGVVPDDDDKFAALNAALFSDGTFI 136 (412)
T ss_pred chhc-------cceeecceeehhhcchhhhhCccEEeec---hhhhhHHHHHhCCCcccCCCcceeeeeeeeEEcCcEEE
Confidence 8765 3467888888888989999999999999 99999999999999 89999999999999999999999
Q ss_pred EeCCCceeeeeEEEEEEeecCCcc-eeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEecc
Q 008725 270 YIPKNTKCPMPISTYFRINAMETG-QFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWY 348 (556)
Q Consensus 270 ~Vp~gv~~~~pl~~~f~~~~~~~~-q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~ 348 (556)
|||+|+++++||+++|+++++..+ |++|++|++|+||+++|+|+|++| .....+|++++|+++++||+|+|++||||+
T Consensus 137 yVp~g~~~~~Pi~~~~~~~~~~~~~q~~~~lIiveega~v~~ie~~~~p-~~~~~~h~~vvei~v~~nA~v~~~~vqn~~ 215 (412)
T COG0719 137 YVPKGVEVPTPIQLYFIINGENTGVQFERTLIIVEEGAEITVIEGCSAP-VGSGSLHNGVVEIFVGENASLTYTTVQNWS 215 (412)
T ss_pred EeCCCceeccceEEEEEecCCCccceeeeEEEEECCCCEEEEEccccCC-CCCCcceeeEEEEEEcCCCEEEEEEecccc
Confidence 999999999999999999876555 999999999999999999999999 777888999999999999999999999996
Q ss_pred CCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCC
Q 008725 349 AGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKN 428 (556)
Q Consensus 349 ~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~ 428 (556)
. ++++.++|.++.+++|+++|+.+.+|++++|+++++.|.|+||.+++++++++.++|++|++++|+|.|||
T Consensus 216 ~--------~~~~~~~~~~~~~~~a~~~~~~~~~G~~~t~~~~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~ 287 (412)
T COG0719 216 P--------VYNHLTKRAAVEEEDATVRWTQVTLGSKVTRKYPSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPN 287 (412)
T ss_pred c--------ceeeeeeeeeeeccCcEEEEEEEecCCceEEEeceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCC
Confidence 4 57888999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHH
Q 008725 429 TRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFY 508 (556)
Q Consensus 429 t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFY 508 (556)
|+|+|++|||+.|+|+.+|||.|+|.++|++|+++++|++||||++|+++|+|+|+|++|||+|+||||||+||+|||||
T Consensus 288 t~s~i~~kgI~~d~a~~vfrG~i~i~~~A~~s~a~~~c~~LlLs~~a~~dt~P~LeI~~ddV~~~H~Atvg~ideeqLFY 367 (412)
T COG0719 288 TRSNILSKGIVKDGARTVFRGLIDIRKGATGSDAYQECRTLLLSDDARADTVPILEIETDDVKAGHEATVGRIDEEQLFY 367 (412)
T ss_pred ceeEEEEEEEEcCCCEEEEEeEEEEecCCCCCchheeeceEEecCCcccccCceEEEecCCceEeeceeecccChHHEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHHHhhccc
Q 008725 509 FQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEG 553 (556)
Q Consensus 509 L~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li~~~l~~ 553 (556)
||||||+|+||++|||+||+.+++++||+ +..+.+.++...++|
T Consensus 368 LmSRGl~e~eA~~lIV~GF~~~vi~~lp~-~~v~~~~~~~~~~~~ 411 (412)
T COG0719 368 LMSRGLSEEEAKRLIVRGFLEEVIEELPE-EAVEEQLLIFIELEG 411 (412)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999 788877777776653
No 5
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=100.00 E-value=1.7e-78 Score=649.93 Aligned_cols=389 Identities=18% Similarity=0.255 Sum_probs=333.2
Q ss_pred HHHHHHHHHhHhCCCCCCCCCCCCCCCcccccccc-CCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeeceEE
Q 008725 128 EYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYS-APKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVL 206 (556)
Q Consensus 128 ~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~-~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g~~ 206 (556)
++|++||+.|.++|||+.+.++|+++|+..+.... .+. ....++++.. +.+ +. +....++||+||.|
T Consensus 28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~------~~~~~~~~~~---~~~--~~-~~~~~~lvfvnG~~ 95 (424)
T PRK10948 28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFS------IAAEISPAQR---DAL--AL-TIDAVRLVFVDGRF 95 (424)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccc------cccccChhhh---hhc--cc-cCCceEEEEECCEE
Confidence 89999999999999999999999999998765311 010 0112333331 222 11 11223689999999
Q ss_pred eccchhhccccccccCCeEEechHHHHHhCcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEE
Q 008725 207 DSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFR 286 (556)
Q Consensus 207 ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~ 286 (556)
.+.... ...+. |++.++. |+.. +...+ .++.|+|||+|++++|+|||||+|+.++.||+++|.
T Consensus 96 ~~~ls~-----~~~~~-v~v~~~~-a~~~--------~~~~~--~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~ 158 (424)
T PRK10948 96 SPALSD-----STEGP-YQVSIND-DRQG--------LPAAI--QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHI 158 (424)
T ss_pred chhhCc-----ccCCC-eEEEEch-hhhh--------ccccc--cccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEE
Confidence 865321 11123 8888866 5443 22222 235999999999999999999999999999999888
Q ss_pred eecCC-c---ceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEE
Q 008725 287 INAME-T---GQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFV 362 (556)
Q Consensus 287 ~~~~~-~---~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~ 362 (556)
.++.+ . ..++|++|++|+||++++||.+.+.. +..+|+|.++||++++||+|+|+.+|+|+.+ .+||.
T Consensus 159 ~~~~~~~~~~~~~~r~lI~~e~~a~~tiie~~~s~~-~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~-------~~~~~ 230 (424)
T PRK10948 159 TQGVAGEELNTAHYRHHLDLAEGAEATVIEHFVSLN-EARHFTGARLTMNVADNAHLNHIKLAFENPS-------SYHFA 230 (424)
T ss_pred ecCCCccccccccceEEEEECCCCEEEEEEEeecCC-CCceeEeeeEEEEECCCCEEEEEEEEccCCC-------cEEEE
Confidence 76532 2 46899999999999999999988754 3567999999999999999999999998654 68898
Q ss_pred eeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCC
Q 008725 363 TKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGN 442 (556)
Q Consensus 363 t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~ 442 (556)
+.+. .++++|+++|+.+.+|++++|+++.+.|.|+||+++++|++++.++|++|+++.|+|.+|||+|++++|||+.|+
T Consensus 231 ~~~~-~~~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~d~ 309 (424)
T PRK10948 231 HNDL-LLGRDARAFSHSFLLGAAVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDK 309 (424)
T ss_pred EeEE-EEcCCCEEEEEEEEeCCceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEcCC
Confidence 8775 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHH
Q 008725 443 SRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAA 522 (556)
Q Consensus 443 s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~L 522 (556)
|++||||+|+|.++|++|+++|.|++||||++|+++|+|+|||++|||+|+||||||+||||||||||||||++++|++|
T Consensus 310 s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~A~~~t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~~A~~L 389 (424)
T PRK10948 310 GRAVFNGLIKVAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQM 389 (424)
T ss_pred CEEEEEEEEEEecCCcCcccEEeecEEEECCCcceEecceEEEecCCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhcCCCchHHHH-HHHHHHhhcccc
Q 008725 523 MISGFCRDVFNELPDEFGAE-VNQLMSLKLEGS 554 (556)
Q Consensus 523 IV~GFl~~vi~~lp~e~~~e-~~~li~~~l~~~ 554 (556)
||.||+.|++++||++.+++ +.++|+.+|.+.
T Consensus 390 lv~gF~~evl~~i~~~~lr~~l~~~i~~~l~~~ 422 (424)
T PRK10948 390 IIYAFAAELTEAIRDEALKQQVLARIGQRLPGG 422 (424)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998755 999999998754
No 6
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=3.6e-75 Score=616.07 Aligned_cols=314 Identities=29% Similarity=0.474 Sum_probs=291.9
Q ss_pred cCCeEEechHHHHHhCcHHHHhhhcc-ccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEEeecC-CcceeeeE
Q 008725 221 EAGVIFCSISEAIREHPDLVRKYLGR-VVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFRINAM-ETGQFERT 298 (556)
Q Consensus 221 ~~GVi~~~l~eA~~~~pdlv~~yl~~-~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~~~~~-~~~q~~r~ 298 (556)
..|+++.++++++..||+++.+||.. .++.++++|+|||.|++++|+|||||+|++++.||+++|..++. +..+++|+
T Consensus 48 ~~G~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~~~~~ 127 (366)
T TIGR01981 48 VDGVIVPDLSDALPLHPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEKNFVHPRL 127 (366)
T ss_pred ECCEEecChhhhhccCcceEEeehhcccCcCCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCccceeeEE
Confidence 35777788888888899999998853 46667899999999999999999999999999999999998763 34678999
Q ss_pred EEEECCCCeEEEEeceecCCC-CCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEE
Q 008725 299 LIVADEGSFVEYLEGCTAPSY-DRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISW 377 (556)
Q Consensus 299 lIiveegA~v~~iE~~~~~~~-~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~ 377 (556)
+|++++||+++++|+|.++.. ...++|++++||++++||+|+|+++|+|+.+ .++|.+.+ +.++++|+++|
T Consensus 128 ~i~v~~~s~~~iie~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~-------~~~~~~~~-~~~~~~a~~~~ 199 (366)
T TIGR01981 128 LIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKN-------STHFSNHR-AFIGRDATLRL 199 (366)
T ss_pred EEEECCCCEEEEEEEecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCC-------cEEEEEeE-EEEcCCCEEEE
Confidence 999999999999999987632 2347999999999999999999999999754 57777665 58889999999
Q ss_pred EEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCC
Q 008725 378 TQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKA 457 (556)
Q Consensus 378 ~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A 457 (556)
..+.+|++++|+++.+.|.|+||+++++|++++.++|++|+++.|+|.+|+|+|++++|||+.|+|+++|||+|+|.++|
T Consensus 200 ~~~~~gg~~~r~~~~~~l~G~~a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~d~s~~vf~G~i~I~~~A 279 (366)
T TIGR01981 200 AVVNLGGKLSRHNFDVDLEGEGSKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGA 279 (366)
T ss_pred EEEEcCCccEEEeeeEEEEcCCcEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEcCCcEEEEEEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCc
Q 008725 458 ENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPD 537 (556)
Q Consensus 458 ~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~ 537 (556)
++|+|+|.|++||||++|+++|+|.|||++|||+|+||||||+||+|||||||||||++++|++|||.||+++++++||+
T Consensus 280 ~~t~a~q~~~~LlLs~~A~~~t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~eA~~llv~gF~~~vi~~i~~ 359 (366)
T TIGR01981 280 KGTDAEQLNRNLLLSDDARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIEEIPD 359 (366)
T ss_pred CcCccccEeeeEEECCCcccccCceEEEecCCceEecceeecCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH
Q 008725 538 EFGAE 542 (556)
Q Consensus 538 e~~~e 542 (556)
|.+++
T Consensus 360 e~lr~ 364 (366)
T TIGR01981 360 ESLKE 364 (366)
T ss_pred HHhHh
Confidence 87654
No 7
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=100.00 E-value=1.1e-56 Score=446.61 Aligned_cols=228 Identities=32% Similarity=0.602 Sum_probs=195.5
Q ss_pred CcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEec
Q 008725 291 ETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAG 370 (556)
Q Consensus 291 ~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g 370 (556)
+..+++|++|++++||+++++|.|..+. ...++|+.++|+++++||+|+|+.+|+|... .+++...+ +.++
T Consensus 2 ~~~~~~~~~I~v~~~s~~~i~~~~~~~~-~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~-------~~~~~~~~-~~~~ 72 (229)
T PF01458_consen 2 NGAQFPRNLIIVEEGSEVTIIESYSSNS-GESSLHNGVIEIYVGENARLKYVSVQNWGEN-------SIHFSNTR-VILG 72 (229)
T ss_dssp SEEEEEEEEEEE-TT-EEEEEEEEEETT-SSEEEEEEEEEEEE-TT-EEEEEEEEE--TC-------EEEEEEEE-EEE-
T ss_pred cccEeeeEEEEECCCCEEEEEEEeCCCC-CCceEEEEEEEEEECCCcEEEEEEEecCCCc-------EEEEEEEE-EEEc
Confidence 4578999999999999999999865553 5788999999999999999999999999654 45666665 4788
Q ss_pred CCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEE
Q 008725 371 DRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGL 450 (556)
Q Consensus 371 ~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~ 450 (556)
++|+++|+.+.+|++.++.++.+.|.|+||.+++++++++.++|++|+++.++|.||+|+|++.+|||+.|+|+.+|||+
T Consensus 73 ~~a~~~~~~~~~g~~~~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~d~s~~vf~G~ 152 (229)
T PF01458_consen 73 ENASLNWVSVSLGGKMSRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLKDKSKVVFRGR 152 (229)
T ss_dssp TT-EEEEEEEES--SEEEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEESTTSEEEEEEE
T ss_pred CceEEEEEEEEeCCeeEEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEcCCceEEEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 451 VQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 451 I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
++|.++|++|+++|.|++||||++|+++++|.|||++|||+|+||||||+||||||||||||||+++||++||++||
T Consensus 153 i~i~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI~~~dV~a~H~AtvG~idee~LFYL~SRGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 153 IKIEKGAQGSDAHQECRNLLLSDEARAYSIPELEIDEDDVKASHGATVGQIDEEQLFYLMSRGLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE-SSSEEEEEEEEEEES-HHHHHHHHCTT--HHHHHHHHHHHH
T ss_pred EEEhhhhhCChheeeEeeEEccCCeEEEEEEhHhcccCCcEEEEeeEeecCCHHHHHHHHHcCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 8
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=98.33 E-value=0.00046 Score=69.04 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=115.0
Q ss_pred CeEEEeCCCceeeeeEEEEEEeecCCcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEE
Q 008725 266 GSFCYIPKNTKCPMPISTYFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQ 345 (556)
Q Consensus 266 G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iq 345 (556)
=..|.|.+|.++.+-.. +.............+-|.+++||+++++.-... .....+...+.+.++++|+++++.+.
T Consensus 8 ~~~I~v~~~s~~~i~~~-~~~~~~~~~~~~~~~~i~v~~~a~l~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 83 (229)
T PF01458_consen 8 RNLIIVEEGSEVTIIES-YSSNSGESSLHNGVIEIYVGENARLKYVSVQNW---GENSIHFSNTRVILGENASLNWVSVS 83 (229)
T ss_dssp EEEEEE-TT-EEEEEEE-EEETTSSEEEEEEEEEEEE-TT-EEEEEEEEE-----TCEEEEEEEEEEE-TT-EEEEEEEE
T ss_pred eEEEEECCCCEEEEEEE-eCCCCCCceEEEEEEEEEECCCcEEEEEEEecC---CCcEEEEEEEEEEEcCceEEEEEEEE
Confidence 36789999998765433 112122222334567789999999999874333 23456778899999999999999995
Q ss_pred eccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCcee--EEEeceEEEecCCeEEEEEEEEEecCceEE--EEeEE
Q 008725 346 NWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAI--TWKYPSVVLEGDDTVGEFYSVALTNNYQQA--DTGTK 421 (556)
Q Consensus 346 n~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~--tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~--D~~t~ 421 (556)
. +.. ...+.. .....|++|+++...+.++.+- ......+...|+++.+++..-.++.++.+. +-...
T Consensus 84 ~-g~~------~~~~~~--~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~d~s~~vf~G~i~ 154 (229)
T PF01458_consen 84 L-GGK------MSRNRI--EIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLKDKSKVVFRGRIK 154 (229)
T ss_dssp S---S------EEEEEE--EEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEESTTSEEEEEEEEE
T ss_pred e-CCe------eEEEEE--EEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEcCCceEEEEeEEE
Confidence 3 221 122222 2234489999999988876554 445557788999999999988888876554 44458
Q ss_pred EEEeCCCcEEEEEEEEEEe-CCeEEEEEEEEEEcCCC
Q 008725 422 MIHKGKNTRSRIISKGISV-GNSRNCYRGLVQVQSKA 457 (556)
Q Consensus 422 i~H~gp~t~S~i~~KgI~~-d~s~~vfrG~I~V~~~A 457 (556)
+.+.+++|.+.+..++++. ++++..-.=.+.|..+-
T Consensus 155 i~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI~~~d 191 (229)
T PF01458_consen 155 IEKGAQGSDAHQECRNLLLSDEARAYSIPELEIDEDD 191 (229)
T ss_dssp EECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE-SSS
T ss_pred EhhhhhCChheeeEeeEEccCCeEEEEEEhHhcccCC
Confidence 8899999999999999987 78888877777776543
No 9
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.57 E-value=0.02 Score=61.38 Aligned_cols=182 Identities=13% Similarity=0.117 Sum_probs=119.0
Q ss_pred eeEEEEECCCCeEE-EEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcE
Q 008725 296 ERTLIVADEGSFVE-YLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSK 374 (556)
Q Consensus 296 ~r~lIiveegA~v~-~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~ 374 (556)
.-.+|.+.+|.++. =|+-|.............-+-|.+++||++++..-.. +.. ........+-++ .+.++++|+
T Consensus 93 ~G~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~~~~~~i~v~~~s~~~iie~~~-~~~-~~~~~~~~~~~~--ei~~~~~A~ 168 (366)
T TIGR01981 93 DGTVLYVPKGVEVEEPIEIKFIGVGGEKNFVHPRLLIIVEKGSKITVIERFE-TIS-LNSGKAFTNSVV--EITVGANAS 168 (366)
T ss_pred CeEEEEECCCCCcCCCEEEEEEEcCCCccceeeEEEEEECCCCEEEEEEEec-CCC-CCCcccEEEEEE--EEEECCCCE
Confidence 34678899997753 1111111111112234456889999999999864321 110 000112333333 357899999
Q ss_pred EEEEEEEeCceeEEEec-eEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEE
Q 008725 375 ISWTQVETGSAITWKYP-SVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQV 453 (556)
Q Consensus 375 ~~~~~v~~Gs~~tr~~~-~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V 453 (556)
++++.+...+.-+.+.. .-...+++|..+...+.++.+..+ ....+...|+++.+++....++.++.+.-++. .|
T Consensus 169 l~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~gg~~~r--~~~~~~l~G~~a~~~~~g~~~~~~~q~~D~~~--~i 244 (366)
T TIGR01981 169 VIFVKVQFFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSR--HNFDVDLEGEGSKLEVKGLAFGAGSQHVDVRT--NV 244 (366)
T ss_pred EEEEEEEcCCCCcEEEEEeEEEEcCCCEEEEEEEEcCCccEE--EeeeEEEEcCCcEEEEEEEEECCCCEEeccCe--EE
Confidence 99999977555444333 234458999999988777666544 55788899999999988888888877766664 45
Q ss_pred cCCCcCCcceEEeceeecCCCcceeccccEEEE
Q 008725 454 QSKAENARNSSQCDSMLLGDTAAANTYPYIQVK 486 (556)
Q Consensus 454 ~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~ 486 (556)
...+.+|.+.|..++++.++ |+..-.-.+.|.
T Consensus 245 ~h~~~~t~s~~~~kgvl~d~-s~~vf~G~i~I~ 276 (366)
T TIGR01981 245 VHNGPDTKSNILHRGILDDR-AHGVFRGIIHIP 276 (366)
T ss_pred EEcCCCcEEEEEEEEEEcCC-cEEEEEEEEEEC
Confidence 67899999999999999875 666555544444
No 10
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.48 E-value=0.028 Score=61.95 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=121.4
Q ss_pred eeEEEEECCCCeEEE-EeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcE
Q 008725 296 ERTLIVADEGSFVEY-LEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSK 374 (556)
Q Consensus 296 ~r~lIiveegA~v~~-iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~ 374 (556)
.-.+|.+.+|.++.. |+-|..... .......-+-|++++||+++++ +...... ....+..+-++ -+.++++|+
T Consensus 174 ~G~~i~Vp~g~~~~~Pi~~~~~~~~-~~~~~~~r~lIi~ee~s~~~ii--e~~~s~~-~~~~~~~~~v~--Ei~v~~~A~ 247 (448)
T TIGR01980 174 GGSFVYVPKGVRVDMPLQTYFRINS-ENTGQFEHTLIIADEGASVHYI--EGCSAPI-YSTNSLHAAVV--ELIVKEDAR 247 (448)
T ss_pred ceEEEEECCCCEeCCCEEEEEEEcC-CccceeeeEEEEECCCCEEEEE--EeccccC-CCccceEEEEE--EEEEcCCCE
Confidence 346788888888642 332322221 1223345678999999999985 3332110 00123444444 368899999
Q ss_pred EEEEEEEeCceeEEEeceE-EEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEE
Q 008725 375 ISWTQVETGSAITWKYPSV-VLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQV 453 (556)
Q Consensus 375 ~~~~~v~~Gs~~tr~~~~~-~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V 453 (556)
++++.+...+.-+.+.... ...+++|..+...+.++..... ....+...|+++.+++....+..++.+.-+.- .|
T Consensus 248 v~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~lG~~~s~--~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t--~v 323 (448)
T TIGR01980 248 VRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKITM--KYPSSILKGEGAKTEFLSIAFAGKGQHLDTGA--KM 323 (448)
T ss_pred EEEEEEeecCCCeEEEEEEEEEEcCCCEEEEEEEEecCceEE--EeceEEEEcCCcEEEEEEEEecCCCEEEEcce--EE
Confidence 9999997766555555543 4568999998888887666555 55677888999999988888887776655554 45
Q ss_pred cCCCcCCcceEEeceeecCCCcceeccccEEEE
Q 008725 454 QSKAENARNSSQCDSMLLGDTAAANTYPYIQVK 486 (556)
Q Consensus 454 ~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~ 486 (556)
...+.+|.+.+..++++.+. |+..-.-.+.|.
T Consensus 324 ~h~~p~t~s~~~~k~v~~d~-s~~vf~G~i~v~ 355 (448)
T TIGR01980 324 IHLAPNTSSTIISKSISKGG-GKSTYRGLVKIG 355 (448)
T ss_pred EEeCCCcEEEEEEEEEECCC-cEEEEEEEEEEC
Confidence 67789999999999999765 666555555554
No 11
>CHL00085 ycf24 putative ABC transporter
Probab=97.45 E-value=0.055 Score=60.25 Aligned_cols=180 Identities=10% Similarity=0.086 Sum_probs=116.9
Q ss_pred eeEEEEECCCCeEEE-EeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcE
Q 008725 296 ERTLIVADEGSFVEY-LEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSK 374 (556)
Q Consensus 296 ~r~lIiveegA~v~~-iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~ 374 (556)
.-.+|.|-+|..+.+ |..|..... .......-+-|++++||+++++. .+..... ...+..+-++ .+.++++|+
T Consensus 194 ~G~fi~Vp~gv~~~~pl~~~~~~~~-~~~~~~~r~lIi~eega~~~iiE--~~~s~~~-~~~~~~~~v~--Ei~v~~~A~ 267 (485)
T CHL00085 194 DGSFCYIPKDTKCPLELSTYFRINN-EESGQFERTLIIAEENSYVSYLE--GCTAPQY-DTNQLHAAVV--ELIALENAE 267 (485)
T ss_pred CeEEEEECCCCcceEEEEEEEeecC-CccceeeeEEEEECCCCEEEEEE--EeccCCC-CccceEEEEE--EEEECCCCE
Confidence 346788888887653 333332221 11233455778999999999854 3321100 0112334443 367899999
Q ss_pred EEEEEEEe---------CceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEE
Q 008725 375 ISWTQVET---------GSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRN 445 (556)
Q Consensus 375 ~~~~~v~~---------Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~ 445 (556)
++++.+.. ++............|++|..+...+.++.+-... ...+.+.|+++.+++..-.++.++.+.
T Consensus 268 l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~--~~~~~L~G~~a~~~~~~i~l~~~~Q~~ 345 (485)
T CHL00085 268 IKYSTVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWK--YPSCILIGDNSQGEFYSVALTNNYQQA 345 (485)
T ss_pred EEEEEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEe--eceEEEecCCcEEEEEEEEEccCCEEE
Confidence 99998854 2222222223344589998888877776555554 466778899999998888888777666
Q ss_pred EEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEE
Q 008725 446 CYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVK 486 (556)
Q Consensus 446 vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~ 486 (556)
-.+.. |...+.+|.+.+..++++.+. |+..-.-.+.|.
T Consensus 346 D~~t~--v~h~~p~t~S~~~~k~Il~d~-s~~vF~G~i~V~ 383 (485)
T CHL00085 346 DTGTK--MIHIGKNTKSRIISKGISAGK-SKNSYRGLVKIG 383 (485)
T ss_pred EeeEE--EEEcCCCcEEEEEEEEEECCC-CEEEEEEEEEEC
Confidence 55544 456899999999999999755 666665555554
No 12
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=97.42 E-value=0.034 Score=60.93 Aligned_cols=176 Identities=7% Similarity=-0.029 Sum_probs=116.6
Q ss_pred CCCeEEEeCCCceeeeeEEEEEEeecCCc-ceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEE
Q 008725 264 SDGSFCYIPKNTKCPMPISTYFRINAMET-GQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYS 342 (556)
Q Consensus 264 ~~G~fI~Vp~gv~~~~pl~~~f~~~~~~~-~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~ 342 (556)
..-..|.+.+|.++.+- + .|....... .....+-|++++||+++++.-. . .....+|-....+.++++|++++.
T Consensus 171 ~~r~lI~~e~~a~~tii-e-~~~s~~~~~~~~n~v~ei~~~~~A~l~~~~lq-~--~~~~~~~~~~~~~~~~~~s~~~~~ 245 (424)
T PRK10948 171 HYRHHLDLAEGAEATVI-E-HFVSLNEARHFTGARLTMNVADNAHLNHIKLA-F--ENPSSYHFAHNDLLLGRDARAFSH 245 (424)
T ss_pred cceEEEEECCCCEEEEE-E-EeecCCCCceeEeeeEEEEECCCCEEEEEEEE-c--cCCCcEEEEEeEEEEcCCCEEEEE
Confidence 45688999999887642 2 232211111 2235577999999999988632 2 124456777788999999999998
Q ss_pred EEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCceeEEEece--EEEecCCeEEEEEEEEEec--CceEEEE
Q 008725 343 TVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPS--VVLEGDDTVGEFYSVALTN--NYQQADT 418 (556)
Q Consensus 343 ~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~--~~L~G~gA~~~~~gv~l~~--~~Q~~D~ 418 (556)
.+.- +.. -+++.. ...-.|++|..+...+.++.+-.+.+.. +.-.|+++.++...-.+.. ..-.+.=
T Consensus 246 ~~~~-G~~------~~r~~~--~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~d~s~~vF~G 316 (424)
T PRK10948 246 SFLL-GAA------VLRHNT--STQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNG 316 (424)
T ss_pred EEEe-CCc------eEEEee--eEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEcCCCEEEEEE
Confidence 8863 221 223333 2335589999999999887766666555 4566788777765444444 4455566
Q ss_pred eEEEEEeCCCcEEEEEEEEEEeC-CeEEEEEEEEEE
Q 008725 419 GTKMIHKGKNTRSRIISKGISVG-NSRNCYRGLVQV 453 (556)
Q Consensus 419 ~t~i~H~gp~t~S~i~~KgI~~d-~s~~vfrG~I~V 453 (556)
...+.+.+.+|.+.+..+.++.+ +++..=.=.+.|
T Consensus 317 ~i~V~~~A~~t~a~q~~~~LLLs~~A~~~t~P~LeI 352 (424)
T PRK10948 317 LIKVAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEI 352 (424)
T ss_pred EEEEecCCcCcccEEeecEEEECCCcceEecceEEE
Confidence 66777789999999999999765 555543333433
No 13
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=97.31 E-value=0.089 Score=58.63 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=118.5
Q ss_pred eeEEEEECCCCeEE-EEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeeeeEecCCcE
Q 008725 296 ERTLIVADEGSFVE-YLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSK 374 (556)
Q Consensus 296 ~r~lIiveegA~v~-~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~ 374 (556)
.-.+|.|-+|.++. -|..|..... .......-+-|++++||+++++ +.+.... ....+..+-++ -+.++++|+
T Consensus 195 ~G~fi~Vp~gv~~~~pi~~~~~~~~-~~~~~~~r~lIi~ee~S~~~ii--E~~~s~~-~~~~~~~~~v~--Ei~v~~~A~ 268 (486)
T PRK11814 195 DGSFVYIPKGVRCPMELSTYFRINA-ANTGQFERTLIIADEGSYVSYL--EGCTAPM-RDENQLHAAVV--ELVALDDAE 268 (486)
T ss_pred CeEEEEECCCCceeEEEEEEEeecC-CCcceeeEEEEEECCCCEEEEE--EEecCCC-CCccceeeEEE--EEEECCCCE
Confidence 45778889998875 2333433221 1223345678999999999985 4432210 00112334443 367899999
Q ss_pred EEEEEEEe-------CceeEEEec--eEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEE
Q 008725 375 ISWTQVET-------GSAITWKYP--SVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRN 445 (556)
Q Consensus 375 ~~~~~v~~-------Gs~~tr~~~--~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~ 445 (556)
++++.+.. |+.-+.++. ...-.|++|..+...+.++.+-.+.+ ..+...|+++.+++..-.+..++.+.
T Consensus 269 l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~--~~~~L~G~ga~~~~~gi~l~~~~q~~ 346 (486)
T PRK11814 269 IKYSTVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKY--PSCILRGDNSVGEFYSVALTNGHQQA 346 (486)
T ss_pred EEEEEEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEee--cceEEecCCcEEEEEeEEeccCCEEE
Confidence 99998864 133333332 33326888888888777766655544 66778899999998888888777665
Q ss_pred EEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEc
Q 008725 446 CYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKN 487 (556)
Q Consensus 446 vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~ 487 (556)
-.+- .|...+.+|.+.+..++++.+. |+..-.-.+.|..
T Consensus 347 D~~t--~v~H~~p~t~S~~~~k~V~~d~-s~~vF~G~i~V~~ 385 (486)
T PRK11814 347 DTGT--KMIHIGKNTKSTIISKGISAGH-SQNTYRGLVKIMP 385 (486)
T ss_pred EeeE--EEEEcCCCcEEEEEEEEEEcCC-cEEEEEEEEEECC
Confidence 5554 4567899999999999998755 6766666655543
No 14
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.11 Score=56.59 Aligned_cols=164 Identities=9% Similarity=0.010 Sum_probs=113.2
Q ss_pred CeEEEeCCCceeeeeEEEEEEeec---CCcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEE
Q 008725 266 GSFCYIPKNTKCPMPISTYFRINA---METGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYS 342 (556)
Q Consensus 266 G~fI~Vp~gv~~~~pl~~~f~~~~---~~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~ 342 (556)
-..|.|.+|..+.. +-...+ .+......+-|++++||+++|..-..- .....|.....+..+++|+++++
T Consensus 165 ~~lIiveega~v~~----ie~~~~p~~~~~~h~~vvei~v~~nA~v~~~~vqn~---~~~~~~~~~~~~~~~~~a~~~~~ 237 (412)
T COG0719 165 RTLIIVEEGAEITV----IEGCSAPVGSGSLHNGVVEIFVGENASLTYTTVQNW---SPVYNHLTKRAAVEEEDATVRWT 237 (412)
T ss_pred eEEEEECCCCEEEE----EccccCCCCCCcceeeEEEEEEcCCCEEEEEEeccc---ccceeeeeeeeeeeccCcEEEEE
Confidence 36778888885421 111111 122234567799999999999874221 22345556666788899999998
Q ss_pred EEEeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCce--eEEEeceEEEecCCeEEEEEEEEEecCceEEEEeE
Q 008725 343 TVQNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSA--ITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGT 420 (556)
Q Consensus 343 ~iqn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~--~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t 420 (556)
.+..-+ +..+.+.+ ....|++|..+...+.++.+ ..-....+.+.|+++.+++..-.+..++-+.-..-
T Consensus 238 ~~~~G~-------~~t~~~~~--~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~d~a~~vfrG 308 (412)
T COG0719 238 QVTLGS-------KVTRKYPS--VRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVKDGARTVFRG 308 (412)
T ss_pred EEecCC-------ceEEEece--EEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEcCCCEEEEEe
Confidence 876522 23444443 34678999999999988776 44455577889999999999888888776555554
Q ss_pred --EEEEeCCCcEEEEEEEEEEeCC-eEE
Q 008725 421 --KMIHKGKNTRSRIISKGISVGN-SRN 445 (556)
Q Consensus 421 --~i~H~gp~t~S~i~~KgI~~d~-s~~ 445 (556)
.+.+.|++|.+++..+.++.+. |++
T Consensus 309 ~i~i~~~A~~s~a~~~c~~LlLs~~a~~ 336 (412)
T COG0719 309 LIDIRKGATGSDAYQECRTLLLSDDARA 336 (412)
T ss_pred EEEEecCCCCCchheeeceEEecCCccc
Confidence 4455899999999999998775 543
No 15
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=56.65 E-value=11 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHH
Q 008725 501 IGEDQLFYFQQRGIDYEKAMAAMIS 525 (556)
Q Consensus 501 IdeeqLFYL~SRGIseeeA~~LIV~ 525 (556)
||+++|=-|+..|+++++|++-|..
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~ 25 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRA 25 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6889999999999999999988764
No 16
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=51.37 E-value=2e+02 Score=29.91 Aligned_cols=75 Identities=8% Similarity=-0.035 Sum_probs=43.1
Q ss_pred eEEEeCCCceeeeeEEEEEEeecCC--cceeeeEEEEECCCCeEEEEeceecCCCC-CcceeEeEEEEEEcCCCEEEEE
Q 008725 267 SFCYIPKNTKCPMPISTYFRINAME--TGQFERTLIVADEGSFVEYLEGCTAPSYD-RNQLHAAVVELYCAEGAEIKYS 342 (556)
Q Consensus 267 ~fI~Vp~gv~~~~pl~~~f~~~~~~--~~q~~r~lIiveegA~v~~iE~~~~~~~~-~~~lh~~v~Ei~v~~~A~l~~~ 342 (556)
+-|.-|.-.. +.+.+++....+.+ .+-....-|.+++|+++.+..--....+. ..+....-++|.|++||.|.|.
T Consensus 32 lkV~~p~y~~-~~~~~~~li~~~GGv~gGD~l~~di~lg~~a~~~iTTQsatKvYrs~~g~A~Q~~~i~vg~nA~Lewl 109 (269)
T COG0829 32 LKVQRPFYPD-EGLCEAMLIHPSGGVVGGDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNITVGENARLEWL 109 (269)
T ss_pred eEEEccCcCC-CCCeEEEEEeCCCCccccceEEEEEEECCCceEEEEccccceeEeCCCCceEEEEEEEECCCCEEEec
Confidence 3444444333 33444433333322 24455667899999999987532222221 2233455689999999999985
No 17
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=48.16 E-value=2.8e+02 Score=27.28 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=39.4
Q ss_pred ceeeeEEEEECCCCeEEEEeceecCCCC-Ccc-eeEeEEEEEEcCCCEEEEEEEEec-cCCCCCCCCceEEEEeeeeeEe
Q 008725 293 GQFERTLIVADEGSFVEYLEGCTAPSYD-RNQ-LHAAVVELYCAEGAEIKYSTVQNW-YAGDEEGNGGIYNFVTKRGLCA 369 (556)
Q Consensus 293 ~q~~r~lIiveegA~v~~iE~~~~~~~~-~~~-lh~~v~Ei~v~~~A~l~~~~iqn~-~~~~~~~~~~v~n~~t~r~v~~ 369 (556)
+-..+.-|.+++||++.+...-....+. ..+ .....+++.|++||.|.|.--..- +.+ . +|.....+.+
T Consensus 14 GD~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~------A--~~~q~~~v~l 85 (209)
T PF01774_consen 14 GDRLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAG------A--RFRQRTRVDL 85 (209)
T ss_dssp T-EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT---------EEEEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCC------C--EEEEEEEEEE
Confidence 4456788999999999887632222221 122 355678999999999999631111 111 1 2232333566
Q ss_pred cCCcEEEEEEEEeCce
Q 008725 370 GDRSKISWTQVETGSA 385 (556)
Q Consensus 370 g~~s~~~~~~v~~Gs~ 385 (556)
.++|.+-|..+-+-|+
T Consensus 86 ~~~A~l~~~e~i~~GR 101 (209)
T PF01774_consen 86 APGASLIYWEIITPGR 101 (209)
T ss_dssp -TT-EEEEEEEEE-S-
T ss_pred CCCCEEEEEEecccCC
Confidence 6777776666554444
No 18
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=32.40 E-value=37 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.3
Q ss_pred cCCCChhhHHHHHhcCCCHHHHHHHHHHhhHHH
Q 008725 498 TSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRD 530 (556)
Q Consensus 498 vG~IdeeqLFYL~SRGIseeeA~~LIV~GFl~~ 530 (556)
+|+-=+++|||+||+||=--+--.-|+.|.+.+
T Consensus 8 iG~rLP~elYfyls~GLi~~~ll~~lt~G~~~~ 40 (90)
T PF12247_consen 8 IGQRLPDELYFYLSIGLISPRLLNALTSGEWIE 40 (90)
T ss_pred hccCCCHHHHHHHHccccChHHHhHhccceEec
Confidence 455567899999999999999999999998844
No 19
>PRK12440 acetate kinase; Reviewed
Probab=30.33 E-value=93 Score=34.13 Aligned_cols=70 Identities=14% Similarity=0.297 Sum_probs=50.8
Q ss_pred EEEeEEEEEeCCCcEEEEEEEEEEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeee
Q 008725 416 ADTGTKMIHKGKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHE 495 (556)
Q Consensus 416 ~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHg 495 (556)
.|.+..+-|.|..++---+-+|-+-|. |.++.--..|+++..+
T Consensus 199 ~~~~~Iv~HLG~G~Si~Ai~~GksvDt-----------------smG~tPl~GL~MgtRs-------------------- 241 (397)
T PRK12440 199 EESSFISVHLGNGASVCAIKNGQSVDT-----------------SMGFTPLSGLMMGTRC-------------------- 241 (397)
T ss_pred HHcCEEEEEeCCCcEeeeeeCCEEEEc-----------------CCCCCCCCCCCCCCcC--------------------
Confidence 366777888888777665555444433 2333344556666654
Q ss_pred eecCCCChhhHHHHHhcCCCHHHHHHHHHH
Q 008725 496 ASTSKIGEDQLFYFQQRGIDYEKAMAAMIS 525 (556)
Q Consensus 496 ATvG~IdeeqLFYL~SRGIseeeA~~LIV~ 525 (556)
|.||..-++||++.|++.+|...+|-.
T Consensus 242 ---G~idp~vv~~l~~~~~s~~e~~~~Ln~ 268 (397)
T PRK12440 242 ---GDLDPGIIEFLLKKGWSQEKVFNSLNK 268 (397)
T ss_pred ---CCCCHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999953
No 20
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=28.25 E-value=66 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.0
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhhHH
Q 008725 501 IGEDQLFYFQQRGIDYEKAMAAMISGFCR 529 (556)
Q Consensus 501 IdeeqLFYL~SRGIseeeA~~LIV~GFl~ 529 (556)
+.+-.+-=|+.|||+.++....|..|-+.
T Consensus 2 ~s~Ha~~rm~eR~Is~~~I~~~l~~g~i~ 30 (73)
T PF14076_consen 2 FSKHARERMQERGISEEDIEDALENGEII 30 (73)
T ss_pred CCHHHHHHHHhCCCCHHHHHHHHhcCeEe
Confidence 45566677899999999999999988753
No 21
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=22.86 E-value=99 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=19.9
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHH
Q 008725 503 EDQLFYFQQRGIDYEKAMAAMIS 525 (556)
Q Consensus 503 eeqLFYL~SRGIseeeA~~LIV~ 525 (556)
-|++--||+.|+|-.||..++..
T Consensus 17 vE~Iq~LMaqGmSsgEAI~~VA~ 39 (51)
T PF03701_consen 17 VERIQELMAQGMSSGEAIAIVAQ 39 (51)
T ss_pred HHHHHHHHHhcccHHHHHHHHHH
Confidence 36788999999999999998754
No 22
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=21.86 E-value=7.5e+02 Score=24.25 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=40.4
Q ss_pred eEEEeCCCceeeeeEEE---EEEeecCCcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEE
Q 008725 267 SFCYIPKNTKCPMPIST---YFRINAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYST 343 (556)
Q Consensus 267 ~fI~Vp~gv~~~~pl~~---~f~~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~ 343 (556)
+-|.|.+|+++-+-=+. +|... .+.....++-|.+++||.+.|+=.=.-+ + ..+-+...++|.+.++|++-|.-
T Consensus 19 ~~i~v~~ga~~~ltTqaatkvy~~~-~~~~a~q~~~~~v~~ga~Le~lP~p~I~-f-~~A~~~q~~~v~l~~~A~l~~~e 95 (209)
T PF01774_consen 19 IDITVGPGARLLLTTQAATKVYRMR-GGRPARQRIRITVEEGAYLEYLPDPTIP-F-AGARFRQRTRVDLAPGASLIYWE 95 (209)
T ss_dssp EEEEE-TT-EEEEE----EEE---T-TS--EEEEEEEEE-TT-EEEE----EEE---TT-EEEEEEEEEE-TT-EEEEEE
T ss_pred EEEEECCCCEEEEechhhhhhcCCC-CCCcEEEEEEEEECCCCEEEEcCCCCEe-e-CCCEEEEEEEEEECCCCEEEEEE
Confidence 45777888765433232 23321 1222566788999999999988654443 2 23345678999999999999877
Q ss_pred EEecc
Q 008725 344 VQNWY 348 (556)
Q Consensus 344 iqn~~ 348 (556)
+--.+
T Consensus 96 ~i~~G 100 (209)
T PF01774_consen 96 IITPG 100 (209)
T ss_dssp EEE-S
T ss_pred ecccC
Confidence 65544
No 23
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=21.69 E-value=69 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=16.1
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHhhH
Q 008725 503 EDQLFYFQQRGIDYEKAMAAMISGFC 528 (556)
Q Consensus 503 eeqLFYL~SRGIseeeA~~LIV~GFl 528 (556)
++.+=||.+|||+++.++.. =-||+
T Consensus 12 ~~a~~YL~~Rgl~~e~i~~F-~lGya 36 (128)
T PF08275_consen 12 KEALEYLKKRGLSDETIKKF-QLGYA 36 (128)
T ss_dssp HHHHHHHHHTT--HHHHHHT-T-EEE
T ss_pred HHHHHHHHHcCCCHHHHHHh-CCCcc
Confidence 34889999999998877654 33554
No 24
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=20.32 E-value=85 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHhhH
Q 008725 504 DQLFYFQQRGIDYEKAMAAMISGFC 528 (556)
Q Consensus 504 eqLFYL~SRGIseeeA~~LIV~GFl 528 (556)
+.+.||..||-+.+.|..++-+=|.
T Consensus 8 ~Dl~yLLnRGY~~k~al~fVgnhy~ 32 (58)
T PF04256_consen 8 EDLRYLLNRGYPKKSALEFVGNHYR 32 (58)
T ss_pred HHHHHHHhCCCCchhHHHHHHHhcc
Confidence 5689999999999999998876553
Done!