Query 008725
Match_columns 556
No_of_seqs 331 out of 1732
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 1.9E-90 6.6E-95 745.3 44.5 396 122-554 23-423 (435)
2 4dn7_A ABC transporter, ATP-bi 100.0 2.2E-89 7.4E-94 733.6 48.4 401 127-554 28-429 (429)
3 1vh4_A SUFD protein; structura 97.8 0.018 6.2E-07 61.7 29.4 177 266-456 174-356 (435)
4 4dn7_A ABC transporter, ATP-bi 97.7 0.031 1E-06 59.8 28.8 177 267-456 183-363 (429)
5 3ic3_A Putative pyruvate dehyd 45.6 15 0.00053 31.2 3.3 26 508-533 64-89 (101)
6 2crn_A Ubash3A protein; compac 40.5 19 0.00066 27.9 3.0 30 497-526 4-33 (64)
7 2ekk_A UBA domain from E3 ubiq 33.8 27 0.00094 25.0 2.7 30 497-526 4-33 (47)
8 3u7d_B Protein HEG homolog 1; 31.3 16 0.00054 23.0 0.9 16 28-43 7-22 (26)
9 2dag_A Ubiquitin carboxyl-term 31.0 35 0.0012 27.2 3.2 29 499-527 6-34 (74)
10 2g3q_A Protein YBL047C; endocy 29.9 30 0.001 24.2 2.3 25 502-526 4-28 (43)
11 2dak_A Ubiquitin carboxyl-term 28.6 45 0.0015 25.5 3.3 29 499-527 6-34 (63)
12 1whc_A RSGI RUH-027, UBA/UBX 3 26.9 44 0.0015 25.7 3.0 29 499-527 6-34 (64)
13 1msk_A Cobalamin-dependent met 24.9 41 0.0014 34.4 3.2 29 496-524 294-323 (331)
14 1wji_A Tudor domain containing 24.8 65 0.0022 24.8 3.6 28 500-527 7-34 (63)
15 2juj_A E3 ubiquitin-protein li 24.4 66 0.0022 24.3 3.3 25 502-526 7-31 (56)
16 1ify_A HHR23A, UV excision rep 23.9 32 0.0011 25.0 1.6 30 498-527 4-33 (49)
17 1z96_A DNA-damage, UBA-domain 23.5 62 0.0021 21.8 3.0 24 503-526 5-28 (40)
18 2o2k_A Methionine synthase; C- 22.6 41 0.0014 34.8 2.7 29 496-524 305-334 (355)
19 2cpw_A CBL-interacting protein 22.5 53 0.0018 25.3 2.7 27 501-527 18-44 (64)
20 3ff5_A PEX14P, peroxisomal bio 22.1 72 0.0025 24.0 3.2 23 503-525 31-53 (54)
21 2jr5_A UPF0350 protein VC_2471 21.1 54 0.0018 27.3 2.6 41 505-548 9-49 (94)
22 2oo9_A E3 ubiquitin-protein li 20.2 84 0.0029 22.9 3.1 24 503-526 5-28 (46)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=1.9e-90 Score=745.26 Aligned_cols=396 Identities=17% Similarity=0.223 Sum_probs=353.6
Q ss_pred CchHHHHHHHHHHHHhHhCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhccccccee
Q 008725 122 EPAWMLEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVA 201 (556)
Q Consensus 122 eP~wl~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~ 201 (556)
...||.++|++||+.|.++|+|+|+.++|+++|+..+. .+..... .. +.+|+++ +.+.+| .+.. +.|+
T Consensus 23 ~~~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~---~~~~~~~-~~-~~~~~~i----~~~~~~-~~~~--~~v~ 90 (435)
T 1vh4_A 23 EGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLI---NSQFVSI-AG-EISPQQR----DALALT-LDSV--RLVF 90 (435)
T ss_dssp ---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHH---TSCEECC-CC-CCCHHHH----HHHCCC-CCSE--EEEE
T ss_pred ccchhHHHHHHHHHHHHhCCCCCCCccccccCchHHhh---ccccccc-cc-ccChhHH----hhhcCc-cCce--EEEE
Confidence 34789999999999999999999999999999988654 3332221 12 3344443 344465 2333 4788
Q ss_pred eceEEeccchhhccccccccCCeEEechHHHHHhCcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeE
Q 008725 202 VDAVLDSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPI 281 (556)
Q Consensus 202 V~g~~ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl 281 (556)
|||+|++. +++++.++||+|+++++ ++||++++++ |+|+|||+|+|++|+|||||+|++++.||
T Consensus 91 v~g~~~~~-----ls~~~~~~Gv~~~~~~~---------~~~~~~~~~~--~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi 154 (435)
T 1vh4_A 91 VDGRYVPA-----LSDATEGSGYEVSINDD---------RQGLPDAIQA--EVFLHLTESLAQSVTHIAVKRGQRPAKPL 154 (435)
T ss_dssp ETTEECGG-----GSCCCTTSSCEEEEESC---------CTTCCCCSSC--CHHHHHHHHHCSCEEEEEECTTCCCSSCE
T ss_pred ECCEEeee-----ccccccCCCeEEEecch---------hhhhhcccCc--hHHHHHHHHhcCCcEEEEECCCCEecccE
Confidence 99999874 23346689999999976 6899998876 89999999999999999999999999999
Q ss_pred EEEEEeecCC----cceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCc
Q 008725 282 STYFRINAME----TGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGG 357 (556)
Q Consensus 282 ~~~f~~~~~~----~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~ 357 (556)
+++|+.++.+ ..+++|++|++|+||+++|||+|.++. ...++|++++||++++||+|+|+++|+|+.+
T Consensus 155 ~l~~~~~~~~~~~~~~~~~r~lIi~eegs~v~iie~~~~~~-~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~------- 226 (435)
T 1vh4_A 155 LLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENPL------- 226 (435)
T ss_dssp EEEEEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCTT-------
T ss_pred EEEEEecCCcccccceeeeEEEEEECCCCEEEEEEEeccCC-cccceeeeEEEEEECCCCEEEEEEEEecCCC-------
Confidence 9999876544 679999999999999999999999985 3578999999999999999999999999653
Q ss_pred eEEEEeeeeeEecCCcEEEEEEEEeCceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEE
Q 008725 358 IYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKG 437 (556)
Q Consensus 358 v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~Kg 437 (556)
++++.++| ++++++|+++|+.+.+|++++|+++++.|.|+||.++++|+++++++|++|++++|+|.||+|+|++++||
T Consensus 227 ~~~~~~~~-~~~~~~a~~~~~~~~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kg 305 (435)
T 1vh4_A 227 SHHFAHND-LLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKT 305 (435)
T ss_dssp CEEEEEEE-EEECTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEE
T ss_pred eEEEEEEE-EEECCCCEEEEEEEEECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEE
Confidence 68999988 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHH
Q 008725 438 ISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYE 517 (556)
Q Consensus 438 I~~d~s~~vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIsee 517 (556)
|++|+|+++|||+|+|.++|++|+++|+|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||+++
T Consensus 306 il~d~s~~vf~G~i~v~~~A~~t~a~~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~ 385 (435)
T 1vh4_A 306 IVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQ 385 (435)
T ss_dssp EECTTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHH
T ss_pred EEcCCCeEEEEEEEEEecCCCCCeeEEEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHhcCCCchHHH-HHHHHHHhhcccc
Q 008725 518 KAMAAMISGFCRDVFNELPDEFGA-EVNQLMSLKLEGS 554 (556)
Q Consensus 518 eA~~LIV~GFl~~vi~~lp~e~~~-e~~~li~~~l~~~ 554 (556)
||++|||+||+.+++++||+|.++ ++.++|+.+|++.
T Consensus 386 eA~~Liv~gF~~~vi~~i~~e~l~~~l~~~i~~~l~~~ 423 (435)
T 1vh4_A 386 DAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG 423 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999765 5999999999864
No 2
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=100.00 E-value=2.2e-89 Score=733.57 Aligned_cols=401 Identities=22% Similarity=0.371 Sum_probs=359.2
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCHHHHHHHHhcCCCchhcccccceeeceEE
Q 008725 127 LEYRLSAFEKFLKMKEPNWSDNRYPPINFQDMCYYSAPKKKPTLNSLDEADPELIRYFDKLGVPLNEQNRLANVAVDAVL 206 (556)
Q Consensus 127 ~~~R~~A~~~f~~~~~P~w~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~lgip~~e~~~l~~v~V~g~~ 206 (556)
.+.+.+|.+...+ .|.|+ +.+|++++.. ..|.. ....+|+++|++++++|+++|||+.|+.. . ++..++
T Consensus 28 ~~~~~~a~~~~~~--~~~~~----~~~dl~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~lgi~~~e~~~-~--g~~~q~ 96 (429)
T 4dn7_A 28 VSLKKRAESAAEK--KAAFG----EDFELEKYEE-GSKVS-KPIEDLQSLDEESKKTLLQVGVIPSEEGR-S--GSFLVL 96 (429)
T ss_dssp HHHHHHHHHTTTC--CCSSS----CCCCGGGSEE-CCSCC-CCCSCGGGSCHHHHHHHHHTTCCTTCTTC-S--EEEEEE
T ss_pred HHHHHHHHHhhcC--CCCCC----CccCHHHccc-Ccccc-cccCChhhCCHHHHHHHHHcCCChhHhhh-c--ceEEEE
Confidence 3445555544332 23343 2377877643 22322 23468999999999999999999988653 3 445788
Q ss_pred eccchhhccccccccCCeEEechHHHHHhCcHHHHhhhccccCCCChHHHHHHHhcCCCCeEEEeCCCceeeeeEEEEEE
Q 008725 207 DSVSIATTHRKTLEEAGVIFCSISEAIREHPDLVRKYLGRVVPSEDNYYAALNAAVFSDGSFCYIPKNTKCPMPISTYFR 286 (556)
Q Consensus 207 ds~sv~~~~~~~L~~~GVi~~~l~eA~~~~pdlv~~yl~~~v~~~d~~faALn~A~~~~G~fI~Vp~gv~~~~pl~~~f~ 286 (556)
|+..++++ +.++||+|++|++|+++| |++++||++++++++|+|+|||+|+|++|+|||||+|+++++||+++|+
T Consensus 97 d~~~v~~~----~~~~GV~~~~l~~Al~~~-~lv~~y~~~~v~~~~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi~~~~~ 171 (429)
T 4dn7_A 97 DNAVSHST----LKDKNVELMSTHKAMEKY-EWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSMPVQTCLM 171 (429)
T ss_dssp TTEEEEEE----ESSSSSEEEEHHHHHHHC-GGGGGTTTTSSCTTSSHHHHHHHHTTCBCEEEEECTTCBCSSCEEEEEE
T ss_pred cCceEEEe----ecCCCEEEEcHHHHhhhh-HHHHHHHhccCCCCcCHHHHHHHhhCCCcEEEEECCCcEEEEEEEEEEE
Confidence 88877754 447899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eecCCcceeeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEEeccCCCCCCCCceEEEEeeee
Q 008725 287 INAMETGQFERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGNGGIYNFVTKRG 366 (556)
Q Consensus 287 ~~~~~~~q~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iqn~~~~~~~~~~~v~n~~t~r~ 366 (556)
+++.+..|++|++|++|+||+++|||+|.++.+...++|++++||++++||+|+|++||+|+.+ .+++.+++.
T Consensus 172 i~~~~~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~-------~~~~~~~~~ 244 (429)
T 4dn7_A 172 LGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQ-------IGVRPRTVV 244 (429)
T ss_dssp ECSSSEEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTE-------EEEEEEEEE
T ss_pred EcCCccceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCC-------cEEecceeE
Confidence 9987789999999999999999999999998766678999999999999999999999999753 788887764
Q ss_pred eEecCCcEEEEEEEEeCc-eeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEEEeCCCcEEEEEEEEEEeCCeEE
Q 008725 367 LCAGDRSKISWTQVETGS-AITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGNSRN 445 (556)
Q Consensus 367 v~~g~~s~~~~~~v~~Gs-~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~H~gp~t~S~i~~KgI~~d~s~~ 445 (556)
.++++|++.|..+.+|+ +.+++++++.|.|+||.++++|++++.++|++|++++|+|.||+|+|++++|||++ +|+.
T Consensus 245 -~~~~~a~~~~~~v~~~g~~~~~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-~s~~ 322 (429)
T 4dn7_A 245 -SVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRL 322 (429)
T ss_dssp -EECTTCEEEEEEEECSCCSEEEECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-SSEE
T ss_pred -EECCCcEEEEEEEEecCceEEeeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-ccEE
Confidence 78899999999998875 78889999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEEEEEcCCCcCCcceEEeceeecCCCcceeccccEEEEcCCeEEeeeeecCCCChhhHHHHHhcCCCHHHHHHHHHH
Q 008725 446 CYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMIS 525 (556)
Q Consensus 446 vfrG~I~V~~~A~~t~a~q~~~~LLLs~~A~~~T~P~LeI~~dDVk~sHgATvG~IdeeqLFYL~SRGIseeeA~~LIV~ 525 (556)
+|||.|. ++|++|+++|+|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+
T Consensus 323 vfrG~I~--~~A~~t~~~q~~~~LLLsd~A~~~t~P~LeI~~dDV~~~HgATvG~IdeeqLFYL~SRGIse~eA~~LIV~ 400 (429)
T 4dn7_A 323 IARGEMI--GNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVGMIIR 400 (429)
T ss_dssp EEEEEEE--ECSTTEEEEEEEEEEECSSSCEEEEEEEEEECSSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEeeeEe--cCCcCceeEEEeeeEEecCCceEEeeeEEEEEcCCeEEEeccccCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999876 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHhhcccc
Q 008725 526 GFCRDVFNELPDEFGAEVNQLMSLKLEGS 554 (556)
Q Consensus 526 GFl~~vi~~lp~e~~~e~~~li~~~l~~~ 554 (556)
||+.+++++||+|++++++++|+.+|+|.
T Consensus 401 GFl~evi~~lp~e~~~el~~li~~~~~g~ 429 (429)
T 4dn7_A 401 GFLDVGIRGIPEELKEEIENTIAQTALGM 429 (429)
T ss_dssp HHHHGGGTTSCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999873
No 3
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=97.79 E-value=0.018 Score=61.65 Aligned_cols=177 Identities=8% Similarity=-0.019 Sum_probs=120.8
Q ss_pred CeEEEeCCCceeeeeEEEEEEeecCCcce-eeeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEE
Q 008725 266 GSFCYIPKNTKCPMPISTYFRINAMETGQ-FERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTV 344 (556)
Q Consensus 266 G~fI~Vp~gv~~~~pl~~~f~~~~~~~~q-~~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~i 344 (556)
-..|.+.+|.++.. |..| ......... ...+-|++++||+++|+.-..- .....|...+.+.+++||++++..+
T Consensus 174 r~lIi~eegs~v~i-ie~~-~~~~~~~~~~~~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (435)
T 1vh4_A 174 RHHLDLAEGAEATV-IEHF-VSLNDARHFTGARFTINVAANAHLQHIKLAFE---NPLSHHFAHNDLLLAEDATAFSHSF 248 (435)
T ss_dssp EEEEEECTTCEEEE-EEEE-EESSSSCEEEEEEEEEEECTTCEEEEEEEECC---CTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred EEEEEECCCCEEEE-EEEe-ccCCcccceeeeEEEEEECCCCEEEEEEEEec---CCCeEEEEEEEEEECCCCEEEEEEE
Confidence 35688888987753 2222 222111112 2345689999999999874321 3456777888999999999999888
Q ss_pred EeccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEeCcee--EEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEE
Q 008725 345 QNWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVETGSAI--TWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKM 422 (556)
Q Consensus 345 qn~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~Gs~~--tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i 422 (556)
.- +. +-.++.. .....|++|..+...+.++.+- .-....+...|+++.++...-.+..++.+.-..-.+
T Consensus 249 ~~-G~------~~~~~~~--~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~d~s~~vf~G~i 319 (435)
T 1vh4_A 249 LL-GG------AVLRHNT--STQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLI 319 (435)
T ss_dssp EC-CC------SEEEEEE--EEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEE
T ss_pred EE-CC------ceEEEee--EEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEcCCCeEEEEEEE
Confidence 54 22 1233333 2335689999999888876554 444566778899999999888888876555555444
Q ss_pred --EEeCCCcEEEEEEEEEEeC-CeEEEEEEEEEEcCC
Q 008725 423 --IHKGKNTRSRIISKGISVG-NSRNCYRGLVQVQSK 456 (556)
Q Consensus 423 --~H~gp~t~S~i~~KgI~~d-~s~~vfrG~I~V~~~ 456 (556)
.+.+.+|.+.+..++++.+ +++..-.=.+.|..+
T Consensus 320 ~v~~~A~~t~a~~~~~~LlLs~~a~~~t~P~LeI~~d 356 (435)
T 1vh4_A 320 NVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYAD 356 (435)
T ss_dssp EECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCS
T ss_pred EEecCCCCCeeEEEeeeEEccCCCcEEeeeeEEEEcC
Confidence 4479999999999999887 577666666655543
No 4
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=97.68 E-value=0.031 Score=59.81 Aligned_cols=177 Identities=8% Similarity=0.056 Sum_probs=121.6
Q ss_pred eEEEeCCCceeeeeEEEEEEeecCCccee-eeEEEEECCCCeEEEEeceecCCCCCcceeEeEEEEEEcCCCEEEEEEEE
Q 008725 267 SFCYIPKNTKCPMPISTYFRINAMETGQF-ERTLIVADEGSFVEYLEGCTAPSYDRNQLHAAVVELYCAEGAEIKYSTVQ 345 (556)
Q Consensus 267 ~fI~Vp~gv~~~~pl~~~f~~~~~~~~q~-~r~lIiveegA~v~~iE~~~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~iq 345 (556)
..|.+.+|.++..- .-|..........+ .-+-|++++||+++|+.-.. ...+..|...+.+.+++||++....++
T Consensus 183 ~lIi~eegA~v~ii-e~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~---~~~~~~~~~~~~~~~~~~a~~~~~~v~ 258 (429)
T 4dn7_A 183 NIIIVEEGATLDII-TGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHN---WAEQIGVRPRTVVSVEEGGTYVSNYIC 258 (429)
T ss_dssp EEEEECTTCEEEEE-EEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEEC---CCTEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCEEEEE-EEecCCCCcccceEEEEEEEEECCCCEEEEEEEee---cCCCcEEecceeEEECCCcEEEEEEEE
Confidence 57888999887542 22221111111222 34569999999999987432 134566778889999999999776665
Q ss_pred eccCCCCCCCCceEEEEeeeeeEecCCcEEEEEEEEe--CceeEEEeceEEEecCCeEEEEEEEEEecCceEEEEeEEEE
Q 008725 346 NWYAGDEEGNGGIYNFVTKRGLCAGDRSKISWTQVET--GSAITWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMI 423 (556)
Q Consensus 346 n~~~~~~~~~~~v~n~~t~r~v~~g~~s~~~~~~v~~--Gs~~tr~~~~~~L~G~gA~~~~~gv~l~~~~Q~~D~~t~i~ 423 (556)
.-+. +...++. .....|++|..+...+.+ |.........+...|+++.+++.+-.++. +.+.-..-.+.
T Consensus 259 ~~g~------~~~~~~~--~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-~s~~vfrG~I~ 329 (429)
T 4dn7_A 259 LKPV------RSVQTYP--TVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRLIARGEMI 329 (429)
T ss_dssp CSCC------SEEEECC--EEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-SSEEEEEEEEE
T ss_pred ecCc------eEEeeee--eEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-ccEEEEeeeEe
Confidence 4211 1122222 123457899777776655 56666777788999999999999999998 66677777888
Q ss_pred EeCCCcEEEEEEEEEEeCC-eEEEEEEEEEEcCC
Q 008725 424 HKGKNTRSRIISKGISVGN-SRNCYRGLVQVQSK 456 (556)
Q Consensus 424 H~gp~t~S~i~~KgI~~d~-s~~vfrG~I~V~~~ 456 (556)
..+.+|.+.+..++++.+. ++..-.=.+.|..+
T Consensus 330 ~~A~~t~~~q~~~~LLLsd~A~~~t~P~LeI~~d 363 (429)
T 4dn7_A 330 GNAKGAKGHLECKGLVLTDKGSQLAIPILEANVD 363 (429)
T ss_dssp ECSTTEEEEEEEEEEECSSSCEEEEEEEEEECSS
T ss_pred cCCcCceeEEEeeeEEecCCceEEeeeEEEEEcC
Confidence 8899999999999998765 77665555655443
No 5
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=45.57 E-value=15 Score=31.17 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHhcCCCHHHHHHHHHHhhHHHHhc
Q 008725 508 YFQQRGIDYEKAMAAMISGFCRDVFN 533 (556)
Q Consensus 508 YL~SRGIseeeA~~LIV~GFl~~vi~ 533 (556)
|-++.|+++++|...|+.||-.++-+
T Consensus 64 ~a~~~~~s~~eal~rI~egF~~El~~ 89 (101)
T 3ic3_A 64 YARESEYTEDEALERIVEMFEAELSR 89 (101)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999988754
No 6
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.53 E-value=19 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=26.7
Q ss_pred ecCCCChhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 497 STSKIGEDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 497 TvG~IdeeqLFYL~SRGIseeeA~~LIV~G 526 (556)
--|+.|++.|.-|++-|++++.|++-|..-
T Consensus 4 ~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t 33 (64)
T 2crn_A 4 GSSGSSPSLLEPLLAMGFPVHTALKALAAT 33 (64)
T ss_dssp SSCCCSCSSHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 457889999999999999999999988764
No 7
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.81 E-value=27 Score=24.97 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.9
Q ss_pred ecCCCChhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 497 STSKIGEDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 497 TvG~IdeeqLFYL~SRGIseeeA~~LIV~G 526 (556)
+-..+|+++|--|++-|++++.|++-|...
T Consensus 4 ~~~~~~~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 4 GSSGVNQQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp CCCSSCHHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345789999999999999999999887664
No 8
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=31.30 E-value=16 Score=22.97 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=14.6
Q ss_pred CCCCCCCCcccccccc
Q 008725 28 HPKLENPKFIVPKSSR 43 (556)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (556)
+|.++||.||-..+||
T Consensus 7 ypgqynpsfisddsrr 22 (26)
T 3u7d_B 7 FPGQYNPSFISDESRR 22 (26)
T ss_pred ccCccCcccccCcchh
Confidence 8999999999998887
No 9
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.00 E-value=35 Score=27.16 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 499 SKIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 499 G~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
-.+|++.|.-|++-|++++.|++.|..-.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVYYTG 34 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35899999999999999999999987654
No 10
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.86 E-value=30 Score=24.17 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=21.6
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 502 GEDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 502 deeqLFYL~SRGIseeeA~~LIV~G 526 (556)
+++.+--|++-|+++++|++-|-..
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 6788999999999999998877653
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.57 E-value=45 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=25.6
Q ss_pred CCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 499 SKIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 499 G~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
+..+++.|--|++-|+++++|++-|....
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATN 34 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 36899999999999999999999887653
No 12
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.89 E-value=44 Score=25.70 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 499 SKIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 499 G~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
..+|++.|--|++-|++++.|++-|...+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTG 34 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 46899999999999999999999988653
No 13
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=24.87 E-value=41 Score=34.45 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=25.2
Q ss_pred eecCCCChhhHH-HHHhcCCCHHHHHHHHH
Q 008725 496 ASTSKIGEDQLF-YFQQRGIDYEKAMAAMI 524 (556)
Q Consensus 496 ATvG~IdeeqLF-YL~SRGIseeeA~~LIV 524 (556)
-+||+|++||+- |-+-||++.++|++.|-
T Consensus 294 F~vg~i~~dq~~dya~rkg~~~~~~~~~l~ 323 (331)
T 1msk_A 294 YAVAQIQRDQVEDYARRKGMSVTEVERWLA 323 (331)
T ss_dssp CCCCCBCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred eCCCccCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 468999999995 99999999999998873
No 14
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.83 E-value=65 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.0
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 500 KIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 500 ~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
.+|++.|--|++-|+++++|++-|....
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4799999999999999999988776543
No 15
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=24.39 E-value=66 Score=24.35 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.4
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 502 GEDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 502 deeqLFYL~SRGIseeeA~~LIV~G 526 (556)
-|+++--|||-|+++++|++-|..+
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3678999999999999999987643
No 16
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.90 E-value=32 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=25.7
Q ss_pred cCCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 498 TSKIGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 498 vG~IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
.|.-+++++--|++-|+++++|+.-|-..+
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 466688999999999999999999887654
No 17
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.52 E-value=62 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.0
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 503 EDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 503 eeqLFYL~SRGIseeeA~~LIV~G 526 (556)
++++-=|++-|+++++|+.-|-..
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 568888999999999998876543
No 18
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=22.61 E-value=41 Score=34.79 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.8
Q ss_pred eecCCCChhhHH-HHHhcCCCHHHHHHHHH
Q 008725 496 ASTSKIGEDQLF-YFQQRGIDYEKAMAAMI 524 (556)
Q Consensus 496 ATvG~IdeeqLF-YL~SRGIseeeA~~LIV 524 (556)
-+||+|++||+- |-+-||++.++|++.|-
T Consensus 305 F~vgki~~dQ~~dya~rkg~~~~~~~~wl~ 334 (355)
T 2o2k_A 305 FAVGKISKDQVEDYALRKNISVAEVEKWLG 334 (355)
T ss_dssp CCCCCBCHHHHHHHHHHHTCCHHHHHHHTG
T ss_pred eCCCcccHHHHHHHHHHcCCCHHHHHHHhh
Confidence 469999999995 99999999999999763
No 19
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.45 E-value=53 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=23.9
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhh
Q 008725 501 IGEDQLFYFQQRGIDYEKAMAAMISGF 527 (556)
Q Consensus 501 IdeeqLFYL~SRGIseeeA~~LIV~GF 527 (556)
.|++.|--|++-|+++++|++.|....
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~ 44 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTG 44 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 688999999999999999999887644
No 20
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=22.07 E-value=72 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.0
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHH
Q 008725 503 EDQLFYFQQRGIDYEKAMAAMIS 525 (556)
Q Consensus 503 eeqLFYL~SRGIseeeA~~LIV~ 525 (556)
+.++-||+|.||+++|-..+|-+
T Consensus 31 ~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 31 ATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHc
Confidence 56788999999999998777643
No 21
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=21.13 E-value=54 Score=27.34 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=36.0
Q ss_pred hHHHHHhcCCCHHHHHHHHHHhhHHHHhcCCCchHHHHHHHHHH
Q 008725 505 QLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMS 548 (556)
Q Consensus 505 qLFYL~SRGIseeeA~~LIV~GFl~~vi~~lp~e~~~e~~~li~ 548 (556)
.|.|-+-||+-|- .+|+.+|++.-+..++.+.+.+..+|++
T Consensus 9 RL~~~~rRGmlEl---DllL~~F~~~~~~~ls~~el~~f~~LL~ 49 (94)
T 2jr5_A 9 RIKWACRRGMLEL---DVVIMPFFEECFDSLTESEQDDFVALLE 49 (94)
T ss_dssp HHHHHHCCSSHHH---HHTTTTHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 4777889999984 6999999999999999998888888875
No 22
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=20.20 E-value=84 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.4
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 008725 503 EDQLFYFQQRGIDYEKAMAAMISG 526 (556)
Q Consensus 503 eeqLFYL~SRGIseeeA~~LIV~G 526 (556)
|+.+--|||-|.++++|++-|..+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567888999999999999988654
Done!