Query 008726
Match_columns 556
No_of_seqs 215 out of 1339
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1E-31 2.2E-36 293.3 21.9 305 231-545 112-453 (472)
2 KOG1338 Uncharacterized conser 100.0 1.1E-29 2.5E-34 257.6 16.5 247 152-406 3-273 (466)
3 PF00856 SET: SET domain; Int 99.7 3.8E-16 8.3E-21 143.3 11.0 53 338-390 110-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.3 3E-12 6.6E-17 115.1 6.0 100 432-531 8-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.7 2.6E-08 5.7E-13 86.8 7.1 48 342-389 69-116 (116)
6 PF09273 Rubis-subs-bind: Rubi 97.8 2.1E-05 4.6E-10 70.4 4.5 85 25-115 1-92 (128)
7 KOG2589 Histone tail methylase 93.5 0.075 1.6E-06 55.4 3.9 46 341-391 192-238 (453)
8 KOG1085 Predicted methyltransf 89.7 0.31 6.6E-06 49.4 3.4 50 348-399 335-386 (392)
9 KOG1079 Transcriptional repres 87.0 0.57 1.2E-05 52.6 3.6 46 345-390 664-709 (739)
10 KOG4442 Clathrin coat binding 85.2 0.84 1.8E-05 51.5 3.8 44 346-390 193-237 (729)
11 KOG1080 Histone H3 (Lys4) meth 78.5 1.9 4E-05 51.6 3.7 71 318-390 911-983 (1005)
12 COG2940 Proteins containing SE 73.4 1.9 4.2E-05 47.7 1.9 45 345-391 404-450 (480)
13 KOG1082 Histone H3 (Lys9) meth 71.3 3.4 7.4E-05 44.1 3.2 44 167-210 171-214 (364)
14 KOG1085 Predicted methyltransf 57.6 21 0.00045 36.6 5.5 38 168-205 252-289 (392)
15 KOG1338 Uncharacterized conser 38.1 47 0.001 35.7 4.7 78 340-422 269-348 (466)
16 smart00317 SET SET (Su(var)3-9 35.9 44 0.00096 28.1 3.6 33 167-199 78-113 (116)
17 KOG1083 Putative transcription 34.7 39 0.00084 40.5 3.7 45 348-393 1252-1297(1306)
18 COG1188 Ribosome-associated he 33.4 24 0.00052 30.6 1.4 56 311-392 7-62 (100)
19 PF03793 PASTA: PASTA domain; 32.9 82 0.0018 24.0 4.3 47 152-198 5-51 (63)
20 KOG1082 Histone H3 (Lys9) meth 32.3 45 0.00096 35.7 3.6 49 346-394 272-324 (364)
21 KOG4442 Clathrin coat binding 28.9 50 0.0011 37.9 3.3 28 173-200 121-148 (729)
22 KOG1141 Predicted histone meth 27.9 31 0.00068 40.2 1.5 43 164-206 791-833 (1262)
23 TIGR02059 swm_rep_I cyanobacte 24.9 87 0.0019 27.2 3.4 30 364-393 70-99 (101)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.98 E-value=1e-31 Score=293.29 Aligned_cols=305 Identities=22% Similarity=0.316 Sum_probs=235.4
Q ss_pred HHHHHHHHHhhc-CCCCCchHHHHhcCCCCCCCCCCcHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 008726 231 TMLLLWSMKEKH-NCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFP 309 (556)
Q Consensus 231 ~~Lal~Ll~Er~-g~~S~w~pYl~~LP~~~~tpl~w~~eel~~L~gt~l~~~v~~~~~~l~~~y~~l~~~l~~~~p~~f~ 309 (556)
..|++++++++. +..|+|++|+..||.++++|++|..+++..|.++..+..+..+++.++..|..+...+ ..+|..++
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVL-QSHPSLFG 190 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHH-Hhcccccc
Confidence 678999999985 5569999999999999999999999999999999999999888888888777777766 45665443
Q ss_pred ---CCCCCHHHHHHHHHHhhcceeeeeecC------CCcceeccccccccCCCCCCCceeeceeeCCCCeEEEEeccccC
Q 008726 310 ---PKFYTWEQFLWACELFYSNSMKIIFAD------GKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCN 380 (556)
Q Consensus 310 ---~~~~t~e~f~WA~siv~SRaf~~~~~d------g~~~~~LvPl~DmlNH~~~~~v~~~~~~d~~~~~~~l~a~~~i~ 380 (556)
.+.+|++.|.||++++.||+|+.+... .....+|+|++||+||++.... ..++..++.+.+++.++|+
T Consensus 191 ~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~---~~~~~~d~~~~l~~~~~v~ 267 (472)
T KOG1337|consen 191 SDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIK---AGYNQEDEAVELVAERDVS 267 (472)
T ss_pred ccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhcc---ccccCCCCcEEEEEeeeec
Confidence 234899999999999999999998751 2467899999999999998832 2456667799999999999
Q ss_pred CCCeeEeccCCCChHHHHHhCCccCCCCCCCceEEEeccCCCCCcccCCCCchhhHhhhhccCccccc--cccCCCCC-H
Q 008726 381 IGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNH--NIFNYGLP-S 457 (556)
Q Consensus 381 ~GeEvfisYG~~sN~eLLl~YGFv~~~~Np~D~v~l~l~~~~~d~~~~~~~~~~~~~~l~~~~L~~~~--~~f~~~lP-~ 457 (556)
+|+||||+||+++|.+||++|||+.+ +||+|.|.+.+.++..++.... +...+.+.++...+ .++..+.| .
T Consensus 268 ~geevfi~YG~~~N~eLL~~YGFv~~-~N~~d~v~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (472)
T KOG1337|consen 268 AGEEVFINYGPKSNAELLLHYGFVEE-DNPYDSVTLKLALPPEDVSYLD-----KSDVLKKNGLPSSGEFSILLTGEPVS 341 (472)
T ss_pred CCCeEEEecCCCchHHHHHhcCCCCC-CCCcceEEEeecccccccchhH-----HHHHHhhcCCCCCceEEEeecCCchh
Confidence 99999999999999999999999999 9999999999999988764322 22334444444432 23333333 3
Q ss_pred HHHHHHHHHcCCcc-cc------c-----------ccCCCChHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCC-----CC
Q 008726 458 PLLDYLRRVRNPMQ-YE------K-----------TLQQPDLEIELEVLEDLQST-FSNMMEILGDTDFGDGE-----NT 513 (556)
Q Consensus 458 ~LL~~LRv~~~~~~-~~------~-----------~~~~~s~~nE~~vl~~L~~~-~~~~L~~y~tt~eeD~~-----~~ 513 (556)
.++...++..+... .. . ...+++..+|...+..+... +...+..+.+..+++.. ..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l 421 (472)
T KOG1337|consen 342 EMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNIL 421 (472)
T ss_pred hhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccccc
Confidence 44444432222211 10 0 01246788999999999988 88888888888876653 34
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008726 514 SWDVKLALEFKDLQRRIISSILTSCSAGRSLV 545 (556)
Q Consensus 514 s~r~~~A~~yR~geKrIL~~~L~~~~~~l~~l 545 (556)
+...+++..++.+++|||++.+.....+.+.+
T Consensus 422 ~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l 453 (472)
T KOG1337|consen 422 SKLLELLEKLRTLEKRILEKSLKLLRSRLKLL 453 (472)
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence 57888999999999999999887766443333
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.1e-29 Score=257.60 Aligned_cols=247 Identities=21% Similarity=0.285 Sum_probs=199.8
Q ss_pred CcChhhHHHHHHHHHHCC-Ceee--EEEEEeC----CCeeEEEEccCCCCCCEEEEeccccccccccccC-cchHHHhhc
Q 008726 152 NYTCEKEKCLVQWGESNG-VKTK--LEIAYVG----GAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHK-SDMYNVLGK 223 (556)
Q Consensus 152 ~~~~~~~~~l~~Wl~~~G-~~~~--v~i~~~~----~~GrGl~At~dI~~Ge~ll~VP~~l~it~~~a~~-s~l~~~l~~ 223 (556)
.++.+....|+.|++..+ .+++ +.+..-+ ..|+|++|+++|++|+.++.+|++.+++..+... .++......
T Consensus 3 ~~~~d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv 82 (466)
T KOG1338|consen 3 RNVSDLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRV 82 (466)
T ss_pred CccccHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHH
Confidence 445567899999999988 5664 4443322 2599999999999999999999999999876432 112111111
Q ss_pred -ccCCChHHHHHHHHHHhhc-CCCCCchHHHHhcCC--CCCCCCCCcHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 008726 224 -IEGMSSETMLLLWSMKEKH-NCGSKFKNYFDSLPK--EFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPR 299 (556)
Q Consensus 224 -~~~l~~~~~Lal~Ll~Er~-g~~S~w~pYl~~LP~--~~~tpl~w~~eel~~L~gt~l~~~v~~~~~~l~~~y~~l~~~ 299 (556)
+.+.+.|..|++.|++|.. +.+|+|+||++.+|+ ..++|+||+++|+..|.-+.+++++.+.++.+++.|.....+
T Consensus 83 ~Lne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~p 162 (466)
T KOG1338|consen 83 LLNEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQP 162 (466)
T ss_pred HhhcCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHH
Confidence 2467889999999999985 445999999999997 688999999999986655556666888999999999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHhhcceeeeeecC-----------CCcceeccccccccCCCCC-CCceeeceeeCC
Q 008726 300 LCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFAD-----------GKLRTCLIPIAGFLNHSLN-PHIVHYGRVDSA 367 (556)
Q Consensus 300 l~~~~p~~f~~~~~t~e~f~WA~siv~SRaf~~~~~d-----------g~~~~~LvPl~DmlNH~~~-~~v~~~~~~d~~ 367 (556)
+.+.+|..|. .+++|+|..+++++.+.+|.+...+ ......|+|.+||+||... .++ ....+
T Consensus 163 f~~~~p~vfs--~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na----nl~y~ 236 (466)
T KOG1338|consen 163 FKQHCPIVFS--RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA----NLRYE 236 (466)
T ss_pred HHHhCcchhc--ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc----ceecc
Confidence 9999999885 4999999999999999999998752 1245789999999999987 332 23456
Q ss_pred CCeEEEEeccccCCCCeeEeccCCCChHHHHHhCCccCC
Q 008726 368 TNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQ 406 (556)
Q Consensus 368 ~~~~~l~a~~~i~~GeEvfisYG~~sN~eLLl~YGFv~~ 406 (556)
++|+.|+|.++|.+|+||+++||-++|. |+.||.+.-
T Consensus 237 ~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 237 DNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALC 273 (466)
T ss_pred CcceeeeecCCCCCccccccccccCcch--hhhhhhhcc
Confidence 8999999999999999999999999998 777777755
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.66 E-value=3.8e-16 Score=143.31 Aligned_cols=53 Identities=30% Similarity=0.402 Sum_probs=43.5
Q ss_pred CcceeccccccccCCCCCCCceeeceeeCCCCeEEEEeccccCCCCeeEeccC
Q 008726 338 KLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYG 390 (556)
Q Consensus 338 ~~~~~LvPl~DmlNH~~~~~v~~~~~~d~~~~~~~l~a~~~i~~GeEvfisYG 390 (556)
....+|+|++||+||++.+++.....++..++++.++|.++|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 35689999999999999988654333336789999999999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.30 E-value=3e-12 Score=115.11 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=81.4
Q ss_pred chhhHhhhhccCcccc--ccccCCC-CCHHHHHHHHHHcCCcccccc-------------cCCCChHHHHHHHHHHHHHH
Q 008726 432 SNWTTHMVRGTWLSKN--HNIFNYG-LPSPLLDYLRRVRNPMQYEKT-------------LQQPDLEIELEVLEDLQSTF 495 (556)
Q Consensus 432 ~~~~~~~l~~~~L~~~--~~~f~~~-lP~~LL~~LRv~~~~~~~~~~-------------~~~~s~~nE~~vl~~L~~~~ 495 (556)
...+.++|+.+|+... +.+..++ +|++|++++|+++++..++.. ..++|.+||.+++++|...|
T Consensus 8 ~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~ 87 (128)
T PF09273_consen 8 FEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLC 87 (128)
T ss_dssp HHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHH
Confidence 4567788999999887 3344444 599999999999999876531 24679999999999999999
Q ss_pred HHHHHHhCCCCCCCC-----CCChHhHHHHHHHHHHHHHHH
Q 008726 496 SNMMEILGDTDFGDG-----ENTSWDVKLALEFKDLQRRII 531 (556)
Q Consensus 496 ~~~L~~y~tt~eeD~-----~~~s~r~~~A~~yR~geKrIL 531 (556)
...|++||||+++|+ ...+.+.++|++||+|||+||
T Consensus 88 ~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 88 EARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999986 456677999999999999997
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.72 E-value=2.6e-08 Score=86.84 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=37.7
Q ss_pred eccccccccCCCCCCCceeeceeeCCCCeEEEEeccccCCCCeeEecc
Q 008726 342 CLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSY 389 (556)
Q Consensus 342 ~LvPl~DmlNH~~~~~v~~~~~~d~~~~~~~l~a~~~i~~GeEvfisY 389 (556)
.+.|+++++||++.|++............+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 389999999999999865322222222269999999999999999999
No 6
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=97.80 E-value=2.1e-05 Score=70.45 Aligned_cols=85 Identities=27% Similarity=0.388 Sum_probs=64.2
Q ss_pred cCCCCcchHHHHHhhhhcCCCcceeeccCCCCCCCCcchhHHHHHHHhhhhcccceeeeecc--C-C----CcccccCcc
Q 008726 25 LTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGE--F-D----TQMGFYSPR 97 (556)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~yf~~--~-~----~~~~~~~~~ 97 (556)
||++||+|..|+++|+..|+.....+++..... + -.+||.++||.++++.|..-.. . . ....++|..
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~---~---~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~ 74 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP---L---PPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPE 74 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS---S---HHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC---C---CHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchh
Confidence 589999999999999999999974444444322 2 3899999999999999985221 1 1 234789999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 008726 98 NELETLNSILARVNTLLS 115 (556)
Q Consensus 98 ne~~~~~~~~~~~~~~~~ 115 (556)
||..++..+...|...++
T Consensus 75 nE~~~l~~L~~~~~~~L~ 92 (128)
T PF09273_consen 75 NEIAALQFLIDLCEARLS 92 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999998873
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=93.47 E-value=0.075 Score=55.36 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.2
Q ss_pred eeccccccccCCCCCCCceeeceeeCCC-CeEEEEeccccCCCCeeEeccCC
Q 008726 341 TCLIPIAGFLNHSLNPHIVHYGRVDSAT-NSLKFPLSRPCNIGEQCCLSYGN 391 (556)
Q Consensus 341 ~~LvPl~DmlNH~~~~~v~~~~~~d~~~-~~~~l~a~~~i~~GeEvfisYG~ 391 (556)
..|=|-+ ++||+..|+. +|...+ +...+++.|||.+||||+-.||.
T Consensus 192 LwLGPaa-fINHDCrpnC----kFvs~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNC----KFVSTGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCCCc----eeecCCCceeeeehhhcCCCCceeEEeecc
Confidence 3455655 9999999984 344444 78999999999999999999997
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=89.74 E-value=0.31 Score=49.38 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=37.4
Q ss_pred cccCCCCCCCceeeceeeC--CCCeEEEEeccccCCCCeeEeccCCCChHHHHH
Q 008726 348 GFLNHSLNPHIVHYGRVDS--ATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLIT 399 (556)
Q Consensus 348 DmlNH~~~~~v~~~~~~d~--~~~~~~l~a~~~i~~GeEvfisYG~~sN~eLLl 399 (556)
-++||+...|.- +++-. ....+.+.+.++|.+|||+...||.+|-+.++.
T Consensus 335 RLINHS~~gNl~--TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLK--TKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcce--eeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 489999876632 12211 235689999999999999999999998776553
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=87.00 E-value=0.57 Score=52.56 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=34.7
Q ss_pred ccccccCCCCCCCceeeceeeCCCCeEEEEeccccCCCCeeEeccC
Q 008726 345 PIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYG 390 (556)
Q Consensus 345 Pl~DmlNH~~~~~v~~~~~~d~~~~~~~l~a~~~i~~GeEvfisYG 390 (556)
-.+-++||+.+|+......+-..+..+-+.|.|.|.+|||+|..|+
T Consensus 664 nk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 664 NKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred chhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 3455899999988432112334566788999999999999999997
No 10
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=0.84 Score=51.51 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=32.9
Q ss_pred cccccCCCCCCCceeeceeeCC-CCeEEEEeccccCCCCeeEeccC
Q 008726 346 IAGFLNHSLNPHIVHYGRVDSA-TNSLKFPLSRPCNIGEQCCLSYG 390 (556)
Q Consensus 346 l~DmlNH~~~~~v~~~~~~d~~-~~~~~l~a~~~i~~GeEvfisYG 390 (556)
++-++||++.||... .+|... .-.+-|.+.+.|++||||+..|+
T Consensus 193 laRFiNHSC~PNa~~-~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 193 LARFINHSCDPNAEV-QKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHHhhcCCCCCCcee-eeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 455899999998542 234322 34567889999999999999887
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=78.49 E-value=1.9 Score=51.57 Aligned_cols=71 Identities=24% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHHHHhhcceeeeeecCCCcceeccccccccCCCCCCCceeeceeeC--CCCeEEEEeccccCCCCeeEeccC
Q 008726 318 FLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDS--ATNSLKFPLSRPCNIGEQCCLSYG 390 (556)
Q Consensus 318 f~WA~siv~SRaf~~~~~dg~~~~~LvPl~DmlNH~~~~~v~~~~~~d~--~~~~~~l~a~~~i~~GeEvfisYG 390 (556)
..-...|-.|+.|.+...-=-+.+-.-=++-++||++.||. |.++-. +...+++.+.|+|.+||||+-.|-
T Consensus 911 ~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNC--yakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 911 RYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNC--YAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred HHhccCcccceeeecccceEEeccccCchhheeecccCCCc--eeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 33445556666666642100012234457789999999984 333322 344799999999999999998885
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=73.37 E-value=1.9 Score=47.75 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=34.0
Q ss_pred ccccccCCCCCCCceeeceeeCCCC--eEEEEeccccCCCCeeEeccCC
Q 008726 345 PIAGFLNHSLNPHIVHYGRVDSATN--SLKFPLSRPCNIGEQCCLSYGN 391 (556)
Q Consensus 345 Pl~DmlNH~~~~~v~~~~~~d~~~~--~~~l~a~~~i~~GeEvfisYG~ 391 (556)
.+.=++||+..|++... .....+ .+.+++.++|++|+||.+.||.
T Consensus 404 ~~~r~~nHS~~pN~~~~--~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 404 DVARFINHSCTPNCEAS--PIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred cccceeecCCCCCccee--cccccccceeeecccccchhhhhhcccccc
Confidence 34449999999986543 122333 6778899999999999999985
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=71.31 E-value=3.4 Score=44.14 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=35.2
Q ss_pred HCCCeeeEEEEEeCCCeeEEEEccCCCCCCEEEEeccccccccc
Q 008726 167 SNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKD 210 (556)
Q Consensus 167 ~~G~~~~v~i~~~~~~GrGl~At~dI~~Ge~ll~VP~~l~it~~ 210 (556)
+.|...+++|..++..|+||.+.+.|++|+.|....-.++-+.+
T Consensus 171 q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e 214 (364)
T KOG1082|consen 171 QKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEE 214 (364)
T ss_pred ccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHH
Confidence 45666789998887799999999999999998887765554443
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=57.63 E-value=21 Score=36.61 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=31.1
Q ss_pred CCCeeeEEEEEeCCCeeEEEEccCCCCCCEEEEecccc
Q 008726 168 NGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSI 205 (556)
Q Consensus 168 ~G~~~~v~i~~~~~~GrGl~At~dI~~Ge~ll~VP~~l 205 (556)
.|-.-++.+..+.+.|||++|+..++.|+.|+.---.+
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdl 289 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDL 289 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecce
Confidence 45445788888899999999999999999988765544
No 15
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.14 E-value=47 Score=35.70 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=57.0
Q ss_pred ceeccccccccCCCCC-CCceeeceeeCCCCeEEEEeccccCCCCeeEeccCCCChHHHHHhCC-ccCCCCCCCceEEEe
Q 008726 340 RTCLIPIAGFLNHSLN-PHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYG-FSPQGDNRYDVIPID 417 (556)
Q Consensus 340 ~~~LvPl~DmlNH~~~-~~v~~~~~~d~~~~~~~l~a~~~i~~GeEvfisYG~~sN~eLLl~YG-Fv~~~~Np~D~v~l~ 417 (556)
..+++|+.+|+|-... ++++. . .-...+...+++.|.+ |.|..+.||-..+.++...|| |+-...-|++.+-+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~-~-l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv- 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQ-I-LMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV- 343 (466)
T ss_pred hhhccceeeeecceeecchHHH-H-HhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-
Confidence 5789999999997654 23221 0 1123556778888988 999999999999999999999 66555678887665
Q ss_pred ccCCC
Q 008726 418 IDVGQ 422 (556)
Q Consensus 418 l~~~~ 422 (556)
+.+++
T Consensus 344 ~glpq 348 (466)
T KOG1338|consen 344 IGLPQ 348 (466)
T ss_pred eechh
Confidence 34444
No 16
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=35.91 E-value=44 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=22.0
Q ss_pred HCCCeeeEEEEEeCCC---eeEEEEccCCCCCCEEE
Q 008726 167 SNGVKTKLEIAYVGGA---GRGAVAMEDLRVGDIAL 199 (556)
Q Consensus 167 ~~G~~~~v~i~~~~~~---GrGl~At~dI~~Ge~ll 199 (556)
.|....++.+...... ...++|+++|++||.|.
T Consensus 78 NHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 78 NHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred CCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 3555555555443222 47889999999999875
No 17
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=34.69 E-value=39 Score=40.50 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=30.9
Q ss_pred cccCCCCCCCceeeceeeCCCC-eEEEEeccccCCCCeeEeccCCCC
Q 008726 348 GFLNHSLNPHIVHYGRVDSATN-SLKFPLSRPCNIGEQCCLSYGNFS 393 (556)
Q Consensus 348 DmlNH~~~~~v~~~~~~d~~~~-~~~l~a~~~i~~GeEvfisYG~~s 393 (556)
-+.||++.+|.. ..+|...+. .+.+.|.+|+.+||||+..|..++
T Consensus 1252 RfinhscKPNc~-~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1252 RFINHSCKPNCE-MQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred cccccccCCCCc-cccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 366888877632 123333332 366889999999999999997653
No 18
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.39 E-value=24 Score=30.61 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHhhcceeeeeecCCCcceeccccccccCCCCCCCceeeceeeCCCCeEEEEeccccCCCCeeEeccC
Q 008726 311 KFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYG 390 (556)
Q Consensus 311 ~~~t~e~f~WA~siv~SRaf~~~~~dg~~~~~LvPl~DmlNH~~~~~v~~~~~~d~~~~~~~l~a~~~i~~GeEvfisYG 390 (556)
...-.|-|+|+.-++-+|+..-..-++ +++.-++. ..++...++.|++|.+.||
T Consensus 7 ~~mRLDKwL~~aR~~KrRslAk~~~~~------------------------GrV~vNG~--~aKpS~~VK~GD~l~i~~~ 60 (100)
T COG1188 7 DRMRLDKWLWAARFIKRRSLAKEMIEG------------------------GRVKVNGQ--RAKPSKEVKVGDILTIRFG 60 (100)
T ss_pred cceehHHHHHHHHHhhhHHHHHHHHHC------------------------CeEEECCE--EcccccccCCCCEEEEEeC
Confidence 346688999999999999986432221 11111122 2378899999999999999
Q ss_pred CC
Q 008726 391 NF 392 (556)
Q Consensus 391 ~~ 392 (556)
++
T Consensus 61 ~~ 62 (100)
T COG1188 61 NK 62 (100)
T ss_pred Cc
Confidence 74
No 19
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=32.95 E-value=82 Score=24.03 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=34.2
Q ss_pred CcChhhHHHHHHHHHHCCCeeeEEEEEeCCCeeEEEEccCCCCCCEE
Q 008726 152 NYTCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIA 198 (556)
Q Consensus 152 ~~~~~~~~~l~~Wl~~~G~~~~v~i~~~~~~GrGl~At~dI~~Ge~l 198 (556)
...+...++-.+++++.|..+...-......+-|.+...+..+|+.+
T Consensus 5 d~~g~~~~~a~~~l~~~g~~~~~~~~~~~~~~~g~V~~Q~P~~G~~v 51 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGLTVNVVEEYSDSVPKGTVISQSPAPGTKV 51 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-EEEEEEEEESSSSTTSEEEESSCTTSEE
T ss_pred CcCCCcHHHHHHHHHHCCCEEEEEEEecCCCCCCEEEEEECCCCCCc
Confidence 34455667788999999997765555556666666899999999876
No 20
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=32.26 E-value=45 Score=35.66 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=35.5
Q ss_pred cccccCCCCCCCceeeceeeCC----CCeEEEEeccccCCCCeeEeccCCCCh
Q 008726 346 IAGFLNHSLNPHIVHYGRVDSA----TNSLKFPLSRPCNIGEQCCLSYGNFST 394 (556)
Q Consensus 346 l~DmlNH~~~~~v~~~~~~d~~----~~~~~l~a~~~i~~GeEvfisYG~~sN 394 (556)
++=++||+..|++.++.-+... --.+.|.+.++|.+|+|++..||...+
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 4558999999997654322221 124678889999999999999996544
No 21
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.94 E-value=50 Score=37.92 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=24.5
Q ss_pred eEEEEEeCCCeeEEEEccCCCCCCEEEE
Q 008726 173 KLEIAYVGGAGRGAVAMEDLRVGDIALE 200 (556)
Q Consensus 173 ~v~i~~~~~~GrGl~At~dI~~Ge~ll~ 200 (556)
+|++..+.+.|.||.|.++|++|+.|+.
T Consensus 121 ~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 121 KVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred ceeEEEecCcccceeeccccCCCcEEee
Confidence 4777777889999999999999998876
No 22
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=27.89 E-value=31 Score=40.17 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=30.2
Q ss_pred HHHHCCCeeeEEEEEeCCCeeEEEEccCCCCCCEEEEeccccc
Q 008726 164 WGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSII 206 (556)
Q Consensus 164 Wl~~~G~~~~v~i~~~~~~GrGl~At~dI~~Ge~ll~VP~~l~ 206 (556)
=+.+||-++.+..-.+...|+|+.+-.+|..|..|.--|=.++
T Consensus 791 rmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l 833 (1262)
T KOG1141|consen 791 RMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGAL 833 (1262)
T ss_pred HHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhh
Confidence 3445666666666555678999999999999976665555443
No 23
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=24.95 E-value=87 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.9
Q ss_pred eeCCCCeEEEEeccccCCCCeeEeccCCCC
Q 008726 364 VDSATNSLKFPLSRPCNIGEQCCLSYGNFS 393 (556)
Q Consensus 364 ~d~~~~~~~l~a~~~i~~GeEvfisYG~~s 393 (556)
++.....+.+...+.|..||+|.++|-.-+
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 455566899999999999999999997543
Done!