Query 008727
Match_columns 556
No_of_seqs 662 out of 3231
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 15:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-69 3.7E-74 559.3 64.8 497 50-552 371-894 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.2E-68 1.6E-72 547.3 61.5 468 81-554 367-861 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 9.2E-66 2E-70 542.7 51.2 480 54-554 157-639 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 8.5E-66 1.8E-70 543.0 48.7 489 48-556 50-605 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-64 2.3E-69 522.1 50.1 468 51-537 89-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-61 3.7E-66 498.3 49.8 458 80-555 83-543 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-28 1E-32 262.4 63.2 450 88-554 435-885 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-28 6.3E-33 264.0 61.4 455 61-533 444-899 (899)
9 PRK11447 cellulose synthase su 99.9 3.5E-20 7.5E-25 201.4 61.0 457 62-533 161-739 (1157)
10 PRK11447 cellulose synthase su 99.9 7.9E-20 1.7E-24 198.7 62.4 492 33-536 46-702 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.5E-20 3.3E-25 173.7 37.6 426 57-504 57-488 (966)
12 PRK11788 tetratricopeptide rep 99.9 4E-21 8.6E-26 186.5 32.5 306 163-541 44-354 (389)
13 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 183.6 34.0 298 131-506 47-354 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 4.3E-17 9.4E-22 166.5 52.1 431 87-535 130-572 (615)
15 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4.1E-22 172.2 50.1 166 82-254 13-178 (765)
16 PRK09782 bacteriophage N4 rece 99.9 2.3E-16 4.9E-21 164.3 57.6 214 53-286 49-272 (987)
17 PRK15174 Vi polysaccharide exp 99.9 5.3E-18 1.2E-22 172.5 43.5 334 154-499 42-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4.1E-22 172.2 47.0 408 116-537 12-459 (765)
19 PRK15174 Vi polysaccharide exp 99.9 2.4E-17 5.1E-22 167.8 45.7 331 87-428 45-380 (656)
20 KOG4626 O-linked N-acetylgluco 99.9 2.8E-18 6E-23 159.0 33.6 381 83-480 115-500 (966)
21 TIGR00990 3a0801s09 mitochondr 99.9 3.7E-16 8E-21 159.7 51.3 424 57-499 136-571 (615)
22 PRK14574 hmsH outer membrane p 99.9 9.1E-16 2E-20 156.5 51.8 448 52-536 38-515 (822)
23 PRK09782 bacteriophage N4 rece 99.8 2.6E-15 5.7E-20 156.4 53.7 441 81-537 178-709 (987)
24 KOG2002 TPR-containing nuclear 99.8 8.8E-16 1.9E-20 150.0 43.6 471 64-545 252-756 (1018)
25 KOG2002 TPR-containing nuclear 99.8 9.2E-15 2E-19 143.0 45.7 483 58-554 174-730 (1018)
26 KOG4422 Uncharacterized conser 99.8 1.4E-14 3E-19 129.0 42.2 440 85-549 117-605 (625)
27 PRK14574 hmsH outer membrane p 99.8 2.3E-14 5E-19 146.4 50.2 424 83-537 33-482 (822)
28 KOG2003 TPR repeat-containing 99.8 9.5E-16 2.1E-20 137.2 34.4 274 271-551 429-705 (840)
29 KOG4422 Uncharacterized conser 99.8 2.6E-14 5.6E-19 127.3 37.4 243 81-327 204-464 (625)
30 KOG2076 RNA polymerase III tra 99.7 2.1E-11 4.5E-16 119.2 49.8 471 58-534 149-695 (895)
31 KOG2003 TPR repeat-containing 99.7 6.2E-13 1.3E-17 119.5 34.4 463 47-520 199-709 (840)
32 KOG0495 HAT repeat protein [RN 99.7 9.8E-11 2.1E-15 110.4 46.4 428 93-533 415-879 (913)
33 KOG0495 HAT repeat protein [RN 99.7 3.1E-10 6.8E-15 107.1 48.4 409 79-499 435-880 (913)
34 KOG2076 RNA polymerase III tra 99.7 1.2E-11 2.5E-16 120.9 40.3 383 92-491 147-547 (895)
35 KOG1915 Cell cycle control pro 99.6 3.2E-10 7E-15 103.0 46.2 454 65-532 90-583 (677)
36 KOG4318 Bicoid mRNA stability 99.6 4.9E-12 1.1E-16 122.9 33.7 219 75-311 16-286 (1088)
37 TIGR00540 hemY_coli hemY prote 99.6 6.1E-12 1.3E-16 121.6 32.5 295 131-497 96-397 (409)
38 PRK10747 putative protoheme IX 99.6 9.3E-12 2E-16 119.7 33.5 283 132-498 97-389 (398)
39 TIGR00540 hemY_coli hemY prote 99.6 9.7E-12 2.1E-16 120.3 33.3 292 201-533 96-398 (409)
40 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 132.8 13.2 219 309-533 57-276 (280)
41 PRK10747 putative protoheme IX 99.6 1.7E-11 3.6E-16 117.9 33.6 291 202-533 97-389 (398)
42 PF13429 TPR_15: Tetratricopep 99.6 2.5E-14 5.4E-19 131.4 12.2 262 196-498 15-276 (280)
43 COG2956 Predicted N-acetylgluc 99.5 7.7E-11 1.7E-15 101.8 30.3 289 168-498 49-346 (389)
44 KOG1155 Anaphase-promoting com 99.5 8.7E-10 1.9E-14 100.0 38.2 379 151-550 161-550 (559)
45 KOG1126 DNA-binding cell divis 99.5 6.1E-12 1.3E-16 119.0 25.2 288 205-540 335-626 (638)
46 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.8E-15 103.6 32.1 292 167-498 97-389 (400)
47 KOG1915 Cell cycle control pro 99.5 9.3E-09 2E-13 93.7 43.4 441 83-536 72-538 (677)
48 KOG1155 Anaphase-promoting com 99.5 3.7E-10 8E-15 102.4 32.7 318 198-533 173-494 (559)
49 COG3071 HemY Uncharacterized e 99.5 2.3E-09 4.9E-14 95.8 37.0 285 239-533 97-389 (400)
50 COG2956 Predicted N-acetylgluc 99.5 3.2E-10 6.9E-15 98.1 29.9 241 47-294 35-282 (389)
51 KOG1126 DNA-binding cell divis 99.5 5.2E-11 1.1E-15 112.9 25.2 284 134-433 334-624 (638)
52 KOG4318 Bicoid mRNA stability 99.5 6.3E-11 1.4E-15 115.4 26.3 274 105-449 11-285 (1088)
53 KOG0547 Translocase of outer m 99.4 4.6E-09 9.9E-14 96.1 35.4 416 89-532 120-564 (606)
54 KOG1156 N-terminal acetyltrans 99.4 7.2E-08 1.6E-12 91.6 43.1 433 51-500 10-469 (700)
55 KOG1156 N-terminal acetyltrans 99.4 2.6E-07 5.7E-12 87.9 45.9 432 47-498 40-510 (700)
56 KOG0547 Translocase of outer m 99.4 3.4E-09 7.3E-14 96.9 30.9 195 341-540 337-538 (606)
57 KOG3785 Uncharacterized conser 99.4 2.1E-08 4.5E-13 88.1 34.2 167 90-272 63-230 (557)
58 TIGR02521 type_IV_pilW type IV 99.4 7.2E-10 1.6E-14 99.3 25.7 200 83-288 30-230 (234)
59 KOG1173 Anaphase-promoting com 99.4 2.7E-08 5.8E-13 93.0 35.6 444 76-532 41-516 (611)
60 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.8E-17 82.7 6.5 49 468-516 1-49 (50)
61 PF13041 PPR_2: PPR repeat fam 99.3 5.3E-12 1.2E-16 80.9 6.7 49 398-446 1-49 (50)
62 PRK12370 invasion protein regu 99.3 4.3E-09 9.3E-14 106.0 30.9 250 134-395 276-536 (553)
63 TIGR02521 type_IV_pilW type IV 99.3 2.1E-09 4.5E-14 96.3 25.6 202 117-323 29-230 (234)
64 KOG2047 mRNA splicing factor [ 99.3 1.3E-06 2.8E-11 83.2 44.3 439 83-531 168-684 (835)
65 PF12569 NARP1: NMDA receptor- 99.3 1.7E-08 3.6E-13 98.2 31.5 158 367-529 196-363 (517)
66 KOG2376 Signal recognition par 99.3 9.1E-07 2E-11 83.4 41.0 50 91-141 19-68 (652)
67 PRK12370 invasion protein regu 99.3 5.4E-09 1.2E-13 105.3 28.4 250 203-499 275-535 (553)
68 KOG1173 Anaphase-promoting com 99.3 5.1E-08 1.1E-12 91.1 31.9 284 189-516 244-533 (611)
69 KOG3785 Uncharacterized conser 99.3 3.1E-07 6.7E-12 80.9 34.6 425 91-539 29-495 (557)
70 KOG4162 Predicted calmodulin-b 99.3 3.2E-07 7E-12 89.1 37.9 436 80-535 319-784 (799)
71 KOG2047 mRNA splicing factor [ 99.3 2.1E-06 4.5E-11 81.9 42.5 163 85-254 103-276 (835)
72 KOG4162 Predicted calmodulin-b 99.3 9.8E-08 2.1E-12 92.5 34.1 425 95-541 295-756 (799)
73 PF12569 NARP1: NMDA receptor- 99.3 6.7E-08 1.5E-12 94.1 33.4 310 121-464 6-334 (517)
74 KOG1129 TPR repeat-containing 99.2 1.4E-09 3.1E-14 94.2 18.3 164 371-537 296-461 (478)
75 KOG2376 Signal recognition par 99.2 1.8E-06 3.8E-11 81.6 39.6 454 50-531 14-517 (652)
76 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.2E-13 97.3 26.5 244 262-532 200-477 (508)
77 KOG1840 Kinesin light chain [C 99.2 2.4E-08 5.2E-13 95.9 27.7 248 222-497 195-477 (508)
78 KOG1174 Anaphase-promoting com 99.2 2.3E-06 5.1E-11 77.1 40.8 269 260-537 231-503 (564)
79 KOG1129 TPR repeat-containing 99.2 4.9E-09 1.1E-13 90.9 18.8 229 230-499 227-458 (478)
80 KOG4340 Uncharacterized conser 99.1 7.6E-07 1.6E-11 76.7 28.1 85 305-390 250-335 (459)
81 PRK04841 transcriptional regul 99.1 6.8E-06 1.5E-10 89.4 42.7 336 164-499 384-760 (903)
82 PRK11189 lipoprotein NlpI; Pro 99.1 4.1E-07 9E-12 83.8 28.4 217 64-291 42-266 (296)
83 COG3063 PilF Tfp pilus assembl 99.1 2.1E-07 4.6E-12 77.3 23.0 197 87-289 38-235 (250)
84 COG3063 PilF Tfp pilus assembl 99.0 3.1E-07 6.7E-12 76.3 22.9 200 120-324 36-235 (250)
85 PRK11189 lipoprotein NlpI; Pro 99.0 5.1E-07 1.1E-11 83.2 26.5 185 343-536 77-267 (296)
86 KOG4340 Uncharacterized conser 99.0 5.4E-07 1.2E-11 77.6 24.1 291 158-460 14-335 (459)
87 KOG1914 mRNA cleavage and poly 99.0 3.9E-05 8.5E-10 72.0 40.7 150 381-533 347-500 (656)
88 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.7E-10 77.0 34.4 197 85-288 7-213 (355)
89 KOG1174 Anaphase-promoting com 98.9 3.2E-05 6.9E-10 70.1 33.1 270 115-430 228-501 (564)
90 KOG0548 Molecular co-chaperone 98.9 2.2E-05 4.7E-10 73.7 33.0 407 54-499 8-455 (539)
91 cd05804 StaR_like StaR_like; a 98.9 1.8E-05 3.9E-10 75.8 33.7 65 154-218 6-72 (355)
92 KOG0548 Molecular co-chaperone 98.9 2.8E-05 6E-10 73.0 31.6 191 340-536 234-457 (539)
93 PRK04841 transcriptional regul 98.9 2.9E-05 6.4E-10 84.5 37.4 338 128-465 383-761 (903)
94 KOG0985 Vesicle coat protein c 98.8 0.00017 3.6E-09 72.9 37.3 383 82-531 982-1367(1666)
95 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6E-12 83.6 16.9 152 373-535 110-266 (290)
96 KOG0985 Vesicle coat protein c 98.8 0.00023 5.1E-09 71.9 39.0 389 43-498 978-1369(1666)
97 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6.1E-12 83.6 16.2 253 54-323 7-263 (290)
98 KOG0624 dsRNA-activated protei 98.8 0.0001 2.2E-09 65.3 31.2 310 197-537 46-373 (504)
99 PF12854 PPR_1: PPR repeat 98.8 1.2E-08 2.5E-13 58.5 3.8 31 466-496 3-33 (34)
100 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.6E-13 57.9 4.0 34 499-532 1-34 (34)
101 KOG1127 TPR repeat-containing 98.7 0.00013 2.9E-09 73.5 32.2 421 99-531 473-949 (1238)
102 KOG1127 TPR repeat-containing 98.7 0.00024 5.2E-09 71.8 33.7 420 62-493 472-946 (1238)
103 KOG2053 Mitochondrial inherita 98.7 0.00058 1.2E-08 68.4 48.5 238 47-293 8-258 (932)
104 TIGR03302 OM_YfiO outer membra 98.7 5.9E-06 1.3E-10 73.9 20.6 187 81-290 30-232 (235)
105 KOG1125 TPR repeat-containing 98.6 1.1E-05 2.4E-10 76.3 21.0 224 92-323 293-525 (579)
106 KOG3616 Selective LIM binding 98.6 0.00016 3.4E-09 70.5 29.1 138 372-531 739-876 (1636)
107 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.7E-10 75.9 21.0 219 129-356 295-524 (579)
108 KOG0624 dsRNA-activated protei 98.6 0.00036 7.9E-09 61.9 34.6 205 198-430 164-371 (504)
109 PRK10370 formate-dependent nit 98.6 1E-05 2.2E-10 69.3 18.8 121 413-536 52-175 (198)
110 PLN02789 farnesyltranstransfer 98.6 9.1E-05 2E-09 68.3 26.0 185 346-535 88-303 (320)
111 KOG3617 WD40 and TPR repeat-co 98.6 4.6E-05 1E-09 75.0 24.3 259 117-427 724-994 (1416)
112 TIGR03302 OM_YfiO outer membra 98.6 1.5E-05 3.3E-10 71.2 20.2 61 475-535 171-233 (235)
113 KOG1070 rRNA processing protei 98.5 8.7E-05 1.9E-09 77.4 26.1 130 155-289 1459-1592(1710)
114 COG5010 TadD Flp pilus assembl 98.5 3E-05 6.5E-10 66.2 19.2 158 88-251 70-227 (257)
115 KOG3617 WD40 and TPR repeat-co 98.5 0.0016 3.5E-08 64.7 36.5 330 62-425 742-1170(1416)
116 PLN02789 farnesyltranstransfer 98.5 0.00019 4.1E-09 66.2 25.7 187 96-289 49-249 (320)
117 KOG1070 rRNA processing protei 98.5 9.8E-05 2.1E-09 77.0 25.4 218 116-341 1455-1681(1710)
118 KOG3616 Selective LIM binding 98.5 0.00022 4.7E-09 69.6 26.0 337 87-492 592-930 (1636)
119 KOG1914 mRNA cleavage and poly 98.5 0.0013 2.9E-08 62.2 40.7 409 81-499 17-501 (656)
120 KOG1128 Uncharacterized conser 98.5 3.4E-05 7.3E-10 75.1 20.0 214 229-462 401-614 (777)
121 PRK10370 formate-dependent nit 98.4 1.7E-05 3.7E-10 67.9 16.4 128 377-508 51-181 (198)
122 PRK14720 transcript cleavage f 98.4 0.00028 6.1E-09 72.9 27.0 147 83-253 30-176 (906)
123 PRK15359 type III secretion sy 98.4 2.9E-05 6.3E-10 62.8 16.3 95 403-499 27-121 (144)
124 KOG1128 Uncharacterized conser 98.4 0.00022 4.7E-09 69.8 24.2 211 267-498 404-615 (777)
125 COG4783 Putative Zn-dependent 98.4 0.00062 1.3E-08 63.7 26.1 149 330-499 306-454 (484)
126 COG5010 TadD Flp pilus assembl 98.4 7.3E-05 1.6E-09 63.9 18.5 158 369-530 70-227 (257)
127 KOG3081 Vesicle coat complex C 98.4 0.00014 3.1E-09 62.2 19.3 172 352-534 95-271 (299)
128 KOG3081 Vesicle coat complex C 98.3 0.0015 3.3E-08 56.1 24.1 224 50-292 10-238 (299)
129 KOG3060 Uncharacterized conser 98.3 0.0011 2.4E-08 56.5 22.7 197 345-546 27-232 (289)
130 PRK15359 type III secretion sy 98.3 5.4E-05 1.2E-09 61.2 14.9 104 368-475 27-131 (144)
131 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.6E-09 73.7 21.2 182 80-273 82-267 (694)
132 TIGR02552 LcrH_SycD type III s 98.3 5.5E-05 1.2E-09 60.8 14.7 94 403-498 20-113 (135)
133 PRK14720 transcript cleavage f 98.3 0.00062 1.3E-08 70.5 25.2 168 48-255 30-198 (906)
134 COG4783 Putative Zn-dependent 98.2 0.00048 1E-08 64.4 21.3 120 164-288 316-435 (484)
135 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.7E-11 49.7 4.5 33 472-504 2-34 (35)
136 PRK15179 Vi polysaccharide bio 98.2 0.00037 7.9E-09 71.2 22.4 148 115-268 82-229 (694)
137 PF13812 PPR_3: Pentatricopept 98.2 3.7E-06 8.1E-11 48.6 4.3 32 472-503 3-34 (34)
138 TIGR02552 LcrH_SycD type III s 98.2 6.2E-05 1.4E-09 60.5 12.9 113 422-537 5-117 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.0001 2.2E-09 69.4 15.8 127 365-497 169-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 48.0 4.5 33 402-434 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00026 5.7E-09 66.7 16.5 124 402-532 171-295 (395)
142 PF13812 PPR_3: Pentatricopept 98.0 7.7E-06 1.7E-10 47.3 4.0 33 155-187 2-34 (34)
143 PF10037 MRP-S27: Mitochondria 98.0 0.00011 2.3E-09 69.5 13.3 78 369-446 107-184 (429)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00035 7.6E-09 56.7 14.4 124 86-213 14-142 (145)
145 KOG3060 Uncharacterized conser 98.0 0.0075 1.6E-07 51.6 22.1 159 301-464 57-220 (289)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00053 1.1E-08 55.7 15.0 51 477-529 92-142 (145)
147 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.1E-09 67.9 13.4 123 396-518 62-186 (429)
148 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.8E-10 44.6 3.4 29 472-500 2-30 (31)
149 KOG2041 WD40 repeat protein [G 97.9 0.035 7.5E-07 54.6 27.6 175 116-319 689-875 (1189)
150 PF08579 RPM2: Mitochondrial r 97.8 0.0004 8.7E-09 51.1 10.5 75 372-446 32-115 (120)
151 PF14938 SNAP: Soluble NSF att 97.8 0.0048 1E-07 56.6 20.4 111 235-346 123-250 (282)
152 cd00189 TPR Tetratricopeptide 97.8 0.00036 7.9E-09 51.7 10.7 91 441-533 6-96 (100)
153 PF08579 RPM2: Mitochondrial r 97.8 0.00048 1E-08 50.8 10.3 30 171-200 86-115 (120)
154 PF01535 PPR: PPR repeat; Int 97.8 4.2E-05 9.1E-10 43.0 3.6 31 506-536 1-31 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.3E-08 50.9 13.3 26 230-255 80-105 (119)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0016 3.5E-08 50.7 13.3 97 87-183 5-105 (119)
157 cd00189 TPR Tetratricopeptide 97.7 0.00086 1.9E-08 49.6 11.2 94 403-498 3-96 (100)
158 PRK10866 outer membrane biogen 97.6 0.042 9E-07 48.9 22.7 56 267-322 181-238 (243)
159 PF06239 ECSIT: Evolutionarily 97.6 0.0018 4E-08 54.2 12.4 104 398-520 45-153 (228)
160 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.2E-09 52.5 5.4 80 449-530 3-83 (84)
161 PRK02603 photosystem I assembl 97.6 0.0045 9.8E-08 52.0 15.1 83 402-485 37-121 (172)
162 PRK10153 DNA-binding transcrip 97.6 0.0072 1.6E-07 60.0 18.4 140 396-539 333-487 (517)
163 PRK15363 pathogenicity island 97.6 0.015 3.2E-07 46.6 16.5 96 402-499 37-132 (157)
164 PLN03088 SGT1, suppressor of 97.5 0.0023 4.9E-08 60.7 14.1 87 375-463 12-98 (356)
165 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.5E-08 57.2 14.8 130 155-290 2-136 (280)
166 PF06239 ECSIT: Evolutionarily 97.5 0.0015 3.3E-08 54.6 11.1 87 363-449 45-152 (228)
167 PF07079 DUF1347: Protein of u 97.5 0.082 1.8E-06 49.5 36.9 115 416-533 396-523 (549)
168 PF12895 Apc3: Anaphase-promot 97.5 0.00019 4.2E-09 51.8 5.1 82 413-496 2-84 (84)
169 CHL00033 ycf3 photosystem I as 97.5 0.0026 5.6E-08 53.3 12.4 94 401-495 36-138 (168)
170 PF05843 Suf: Suppressor of fo 97.5 0.0032 7E-08 57.4 13.9 131 85-218 2-136 (280)
171 KOG0553 TPR repeat-containing 97.5 0.002 4.3E-08 56.6 11.3 101 374-478 90-190 (304)
172 PF14938 SNAP: Soluble NSF att 97.5 0.01 2.2E-07 54.4 16.8 135 415-551 89-246 (282)
173 PRK02603 photosystem I assembl 97.4 0.007 1.5E-07 50.8 14.5 64 120-183 36-101 (172)
174 PRK10866 outer membrane biogen 97.4 0.08 1.7E-06 47.1 23.0 183 84-288 32-239 (243)
175 KOG2053 Mitochondrial inherita 97.4 0.19 4.1E-06 51.4 49.2 207 45-257 40-257 (932)
176 KOG2041 WD40 repeat protein [G 97.4 0.16 3.4E-06 50.3 28.1 204 81-320 689-902 (1189)
177 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.4E-07 45.5 13.7 91 163-253 10-102 (120)
178 PLN03088 SGT1, suppressor of 97.4 0.0054 1.2E-07 58.1 14.6 90 338-429 10-99 (356)
179 KOG0550 Molecular chaperone (D 97.4 0.11 2.4E-06 48.0 21.9 86 375-464 259-350 (486)
180 PRK10153 DNA-binding transcrip 97.4 0.015 3.2E-07 57.9 17.9 146 359-509 331-490 (517)
181 PF14559 TPR_19: Tetratricopep 97.4 0.00085 1.8E-08 46.1 6.7 63 200-267 2-64 (68)
182 PF04840 Vps16_C: Vps16, C-ter 97.4 0.12 2.6E-06 47.9 24.3 108 402-529 179-286 (319)
183 PF13525 YfiO: Outer membrane 97.3 0.05 1.1E-06 47.0 18.9 57 91-147 12-70 (203)
184 PRK15363 pathogenicity island 97.3 0.0057 1.2E-07 48.9 11.7 95 86-182 37-131 (157)
185 PF04840 Vps16_C: Vps16, C-ter 97.3 0.15 3.3E-06 47.2 26.8 123 367-515 179-301 (319)
186 CHL00033 ycf3 photosystem I as 97.3 0.0072 1.6E-07 50.5 12.6 65 119-183 35-101 (168)
187 KOG0550 Molecular chaperone (D 97.2 0.061 1.3E-06 49.7 18.3 271 235-536 58-352 (486)
188 KOG0553 TPR repeat-containing 97.2 0.0057 1.2E-07 53.8 11.4 127 340-470 91-221 (304)
189 PF13414 TPR_11: TPR repeat; P 97.2 0.0013 2.9E-08 45.3 6.4 64 470-534 3-67 (69)
190 PF12688 TPR_5: Tetratrico pep 97.2 0.018 3.8E-07 44.4 12.9 88 443-532 9-102 (120)
191 PF13525 YfiO: Outer membrane 97.2 0.052 1.1E-06 46.9 17.2 181 332-525 7-198 (203)
192 COG4235 Cytochrome c biogenesi 97.2 0.023 5.1E-07 50.4 14.8 99 399-499 155-256 (287)
193 COG4235 Cytochrome c biogenesi 97.2 0.038 8.2E-07 49.1 15.8 117 418-537 140-259 (287)
194 COG4700 Uncharacterized protei 97.1 0.1 2.2E-06 42.6 18.2 129 152-283 87-215 (251)
195 KOG2796 Uncharacterized conser 97.1 0.065 1.4E-06 46.3 16.2 145 366-513 178-327 (366)
196 PF13281 DUF4071: Domain of un 97.1 0.1 2.2E-06 48.8 19.0 171 367-539 143-339 (374)
197 KOG2796 Uncharacterized conser 97.1 0.02 4.3E-07 49.3 13.1 134 156-290 179-315 (366)
198 PF14559 TPR_19: Tetratricopep 97.1 0.0021 4.6E-08 44.1 6.2 51 378-429 4-54 (68)
199 PF13432 TPR_16: Tetratricopep 97.1 0.0031 6.8E-08 42.8 6.9 54 198-254 6-59 (65)
200 PF13432 TPR_16: Tetratricopep 97.0 0.0025 5.4E-08 43.3 6.2 57 478-535 5-61 (65)
201 PF03704 BTAD: Bacterial trans 97.0 0.019 4E-07 46.7 12.5 69 438-507 65-138 (146)
202 KOG1538 Uncharacterized conser 97.0 0.23 4.9E-06 48.8 20.6 97 367-498 749-845 (1081)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.31 6.8E-06 45.7 32.8 84 81-167 39-122 (660)
204 PRK10803 tol-pal system protei 97.0 0.019 4.1E-07 51.5 12.5 100 156-255 145-246 (263)
205 PF13414 TPR_11: TPR repeat; P 96.9 0.0047 1E-07 42.5 7.0 63 435-498 3-66 (69)
206 PRK10803 tol-pal system protei 96.8 0.025 5.5E-07 50.7 12.2 97 403-499 146-246 (263)
207 KOG1538 Uncharacterized conser 96.8 0.37 8E-06 47.4 20.1 90 434-534 746-846 (1081)
208 PF03704 BTAD: Bacterial trans 96.7 0.052 1.1E-06 44.1 12.5 73 471-544 63-140 (146)
209 COG4700 Uncharacterized protei 96.6 0.33 7.2E-06 39.8 18.1 134 115-252 85-219 (251)
210 PF12921 ATP13: Mitochondrial 96.5 0.038 8.2E-07 43.0 9.8 98 399-516 1-99 (126)
211 KOG1130 Predicted G-alpha GTPa 96.5 0.13 2.9E-06 47.5 14.5 97 366-462 236-342 (639)
212 PF13424 TPR_12: Tetratricopep 96.5 0.0066 1.4E-07 43.0 5.2 62 471-532 6-73 (78)
213 PF13371 TPR_9: Tetratricopept 96.5 0.014 3E-07 40.7 6.8 57 479-536 4-60 (73)
214 COG3898 Uncharacterized membra 96.5 0.7 1.5E-05 42.7 29.6 281 132-464 97-392 (531)
215 PF12921 ATP13: Mitochondrial 96.5 0.038 8.2E-07 43.0 9.6 97 364-480 1-98 (126)
216 KOG2280 Vacuolar assembly/sort 96.4 1.2 2.7E-05 44.8 34.9 140 112-254 425-574 (829)
217 PF13281 DUF4071: Domain of un 96.4 0.86 1.9E-05 42.8 20.3 100 118-217 140-254 (374)
218 PF13371 TPR_9: Tetratricopept 96.4 0.022 4.8E-07 39.6 7.4 56 443-499 3-58 (73)
219 PF08631 SPO22: Meiosis protei 96.4 0.78 1.7E-05 41.9 22.7 101 191-296 86-192 (278)
220 KOG1130 Predicted G-alpha GTPa 96.4 0.068 1.5E-06 49.3 11.8 132 402-533 197-343 (639)
221 PF07079 DUF1347: Protein of u 96.3 0.98 2.1E-05 42.7 40.8 205 298-511 300-531 (549)
222 COG3118 Thioredoxin domain-con 96.3 0.53 1.2E-05 41.9 16.5 144 126-275 141-286 (304)
223 PRK15331 chaperone protein Sic 96.3 0.37 8E-06 39.0 14.2 88 410-499 47-134 (165)
224 KOG3941 Intermediate in Toll s 96.2 0.059 1.3E-06 47.1 10.2 104 398-520 65-173 (406)
225 KOG1585 Protein required for f 96.2 0.45 9.8E-06 40.9 15.1 88 83-180 30-117 (308)
226 KOG2114 Vacuolar assembly/sort 96.2 1.8 3.8E-05 44.4 26.5 141 93-253 377-517 (933)
227 COG4105 ComL DNA uptake lipopr 96.2 0.77 1.7E-05 40.1 19.1 66 48-113 34-100 (254)
228 PRK15331 chaperone protein Sic 96.2 0.54 1.2E-05 38.1 14.6 89 444-534 46-134 (165)
229 COG4105 ComL DNA uptake lipopr 96.1 0.86 1.9E-05 39.9 20.4 83 329-411 33-117 (254)
230 smart00299 CLH Clathrin heavy 96.1 0.46 1E-05 38.1 14.5 124 370-516 12-136 (140)
231 PF13424 TPR_12: Tetratricopep 96.1 0.02 4.3E-07 40.5 5.7 61 437-497 7-73 (78)
232 PF08631 SPO22: Meiosis protei 96.0 1.2 2.6E-05 40.7 25.4 196 334-532 39-273 (278)
233 COG3118 Thioredoxin domain-con 95.9 0.61 1.3E-05 41.6 15.1 149 91-244 141-290 (304)
234 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.6 3.6E-05 41.2 34.0 416 105-535 30-532 (660)
235 COG1729 Uncharacterized protei 95.8 0.13 2.8E-06 45.2 10.5 99 156-255 144-244 (262)
236 PF09205 DUF1955: Domain of un 95.8 0.63 1.4E-05 35.8 15.6 63 438-501 89-151 (161)
237 KOG2280 Vacuolar assembly/sort 95.8 2.6 5.7E-05 42.6 34.0 110 401-529 685-794 (829)
238 smart00299 CLH Clathrin heavy 95.7 0.84 1.8E-05 36.6 15.4 123 302-446 13-136 (140)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.16 3.4E-06 48.4 11.3 64 399-464 74-141 (453)
240 PF13512 TPR_18: Tetratricopep 95.6 0.34 7.4E-06 38.2 11.1 76 198-273 19-94 (142)
241 PF10300 DUF3808: Protein of u 95.6 0.77 1.7E-05 45.5 16.3 162 368-532 191-374 (468)
242 KOG2114 Vacuolar assembly/sort 95.6 3.3 7.2E-05 42.5 26.0 178 85-287 335-516 (933)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.14 3E-06 48.7 10.2 97 434-536 74-176 (453)
244 PF13512 TPR_18: Tetratricopep 95.4 0.53 1.2E-05 37.2 11.6 84 330-413 10-95 (142)
245 KOG3941 Intermediate in Toll s 95.2 0.36 7.9E-06 42.4 11.0 117 81-217 64-187 (406)
246 PF07035 Mic1: Colon cancer-as 95.2 1.4 3E-05 36.1 15.1 133 141-289 16-148 (167)
247 PF09205 DUF1955: Domain of un 95.1 1.2 2.5E-05 34.4 15.8 138 129-293 12-152 (161)
248 PF10300 DUF3808: Protein of u 95.1 2.5 5.4E-05 42.0 18.1 179 104-289 177-375 (468)
249 PF04184 ST7: ST7 protein; In 95.0 2.7 5.8E-05 40.6 16.8 104 439-542 263-383 (539)
250 COG1729 Uncharacterized protei 95.0 0.82 1.8E-05 40.4 12.6 97 333-429 144-244 (262)
251 PRK11906 transcriptional regul 94.9 1.7 3.7E-05 41.7 15.5 146 380-531 273-433 (458)
252 PF04053 Coatomer_WDAD: Coatom 94.9 0.56 1.2E-05 45.7 12.8 104 86-216 297-400 (443)
253 KOG0543 FKBP-type peptidyl-pro 94.7 1.2 2.6E-05 41.7 13.5 122 374-498 217-354 (397)
254 KOG1920 IkappaB kinase complex 94.6 7.9 0.00017 41.7 21.7 104 408-531 947-1052(1265)
255 KOG4555 TPR repeat-containing 94.5 0.57 1.2E-05 35.9 9.1 53 410-463 53-105 (175)
256 KOG0543 FKBP-type peptidyl-pro 94.5 1.2 2.6E-05 41.6 13.1 123 408-533 216-354 (397)
257 PF04053 Coatomer_WDAD: Coatom 94.5 1.4 3E-05 43.0 14.3 132 128-289 270-401 (443)
258 COG3898 Uncharacterized membra 94.4 4.4 9.5E-05 37.8 31.3 309 63-394 68-392 (531)
259 PF04184 ST7: ST7 protein; In 94.4 5.1 0.00011 38.8 17.0 60 194-254 264-323 (539)
260 PRK11906 transcriptional regul 94.2 3.5 7.6E-05 39.7 15.8 111 137-251 322-432 (458)
261 PF13428 TPR_14: Tetratricopep 94.2 0.17 3.6E-06 30.9 5.0 24 124-147 6-29 (44)
262 KOG4555 TPR repeat-containing 94.1 2.1 4.5E-05 33.0 11.4 90 374-465 52-145 (175)
263 COG4649 Uncharacterized protei 94.1 2.7 5.8E-05 34.3 15.1 135 83-218 58-196 (221)
264 COG4649 Uncharacterized protei 93.9 2.9 6.3E-05 34.1 14.8 124 200-324 69-195 (221)
265 COG3629 DnrI DNA-binding trans 93.9 0.64 1.4E-05 41.6 9.9 60 402-462 155-214 (280)
266 PF07035 Mic1: Colon cancer-as 93.9 3.1 6.8E-05 34.2 15.2 133 386-533 15-148 (167)
267 PF13929 mRNA_stabil: mRNA sta 93.8 2.5 5.3E-05 37.9 13.1 145 66-214 114-263 (292)
268 KOG2610 Uncharacterized conser 93.7 2.1 4.6E-05 38.9 12.4 154 341-497 114-274 (491)
269 COG3629 DnrI DNA-binding trans 93.6 0.9 1.9E-05 40.8 10.3 79 119-198 153-236 (280)
270 PF13170 DUF4003: Protein of u 93.6 5.8 0.00013 36.5 18.6 129 135-266 78-222 (297)
271 PF09613 HrpB1_HrpK: Bacterial 93.5 2.7 5.9E-05 34.0 11.8 52 201-255 22-73 (160)
272 KOG1550 Extracellular protein 93.3 7.7 0.00017 39.6 17.8 15 312-326 228-242 (552)
273 PF10602 RPN7: 26S proteasome 93.2 2.9 6.2E-05 35.1 12.2 65 226-290 36-102 (177)
274 PF13428 TPR_14: Tetratricopep 93.2 0.34 7.4E-06 29.5 5.1 26 157-182 4-29 (44)
275 COG4785 NlpI Lipoprotein NlpI, 92.6 6 0.00013 33.7 14.9 177 137-325 83-266 (297)
276 KOG1941 Acetylcholine receptor 92.5 8.7 0.00019 35.5 15.2 96 192-287 86-188 (518)
277 KOG2066 Vacuolar assembly/sort 92.2 15 0.00033 37.7 27.0 153 91-253 363-532 (846)
278 KOG2610 Uncharacterized conser 91.9 10 0.00022 34.8 14.7 152 130-286 114-272 (491)
279 PF13170 DUF4003: Protein of u 91.8 10 0.00023 34.8 20.9 133 170-304 78-225 (297)
280 PF13176 TPR_7: Tetratricopept 91.8 0.18 3.9E-06 29.1 2.4 23 473-495 2-24 (36)
281 PF13176 TPR_7: Tetratricopept 91.6 0.48 1E-05 27.3 4.1 26 507-532 1-26 (36)
282 COG0457 NrfG FOG: TPR repeat [ 91.4 9.2 0.0002 33.3 28.8 168 365-536 95-267 (291)
283 KOG1920 IkappaB kinase complex 91.1 26 0.00056 38.1 21.2 57 258-323 932-992 (1265)
284 PF10602 RPN7: 26S proteasome 90.9 5.8 0.00012 33.3 11.4 61 121-181 38-100 (177)
285 KOG0403 Neoplastic transformat 90.7 16 0.00035 34.9 18.5 371 122-520 217-631 (645)
286 KOG1550 Extracellular protein 90.4 23 0.00049 36.2 22.5 180 100-291 228-427 (552)
287 PF00637 Clathrin: Region in C 90.3 0.011 2.4E-07 47.8 -5.1 53 91-143 14-66 (143)
288 KOG1258 mRNA processing protei 90.1 22 0.00047 35.5 34.6 376 86-484 81-489 (577)
289 KOG4570 Uncharacterized conser 89.7 11 0.00023 34.3 12.2 101 116-218 61-164 (418)
290 COG1747 Uncharacterized N-term 89.6 22 0.00047 34.8 20.9 181 82-271 64-249 (711)
291 KOG4570 Uncharacterized conser 89.4 2.6 5.5E-05 38.0 8.2 49 380-428 115-163 (418)
292 TIGR02561 HrpB1_HrpK type III 89.3 9.8 0.00021 30.4 10.8 51 202-255 23-73 (153)
293 PF00637 Clathrin: Region in C 89.2 0.28 6E-06 39.6 2.3 84 406-496 13-96 (143)
294 PF13929 mRNA_stabil: mRNA sta 89.2 16 0.00036 32.9 17.1 136 415-550 143-288 (292)
295 PF13431 TPR_17: Tetratricopep 89.2 0.55 1.2E-05 26.6 2.8 22 469-490 12-33 (34)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 3.3 7.1E-05 30.0 7.1 49 99-147 22-70 (103)
297 PF04097 Nic96: Nup93/Nic96; 89.0 31 0.00067 35.8 21.9 21 480-503 515-535 (613)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 3.3 7.1E-05 30.0 7.0 44 454-497 26-69 (103)
299 PF02284 COX5A: Cytochrome c o 88.8 7.6 0.00017 28.5 9.6 47 172-218 28-74 (108)
300 PF13431 TPR_17: Tetratricopep 88.6 0.53 1.1E-05 26.7 2.5 25 222-246 9-33 (34)
301 PF00515 TPR_1: Tetratricopept 88.5 1 2.2E-05 25.3 3.7 26 472-497 3-28 (34)
302 TIGR03504 FimV_Cterm FimV C-te 88.1 1.2 2.5E-05 27.1 3.8 28 511-538 5-32 (44)
303 KOG1941 Acetylcholine receptor 87.9 23 0.0005 33.0 16.1 129 369-497 126-273 (518)
304 KOG1258 mRNA processing protei 87.8 31 0.00068 34.4 34.2 135 82-218 43-180 (577)
305 PHA02875 ankyrin repeat protei 87.8 20 0.00044 35.1 14.7 17 303-319 72-88 (413)
306 COG2976 Uncharacterized protei 87.6 16 0.00034 30.8 14.0 87 373-464 97-188 (207)
307 KOG1585 Protein required for f 87.5 19 0.00041 31.5 18.1 22 332-353 229-250 (308)
308 COG2976 Uncharacterized protei 87.5 16 0.00035 30.7 13.8 125 402-536 56-190 (207)
309 PF09613 HrpB1_HrpK: Bacterial 87.4 14 0.00031 30.0 13.2 118 402-526 9-130 (160)
310 KOG4234 TPR repeat-containing 87.1 7.6 0.00017 32.7 9.0 90 409-499 104-197 (271)
311 PF07719 TPR_2: Tetratricopept 87.1 1.4 3E-05 24.6 3.7 26 508-533 4-29 (34)
312 PF02284 COX5A: Cytochrome c o 87.0 4.8 0.0001 29.6 6.9 46 102-147 28-73 (108)
313 PF11207 DUF2989: Protein of u 86.8 6.4 0.00014 33.3 8.7 72 452-524 123-197 (203)
314 PF07575 Nucleopor_Nup85: Nup8 86.5 42 0.00092 34.5 19.0 28 517-544 507-534 (566)
315 COG0457 NrfG FOG: TPR repeat [ 86.4 21 0.00046 30.9 29.1 153 344-499 109-265 (291)
316 PF13374 TPR_10: Tetratricopep 86.2 2 4.3E-05 25.4 4.4 27 471-497 3-29 (42)
317 PF10345 Cohesin_load: Cohesin 85.8 48 0.001 34.5 41.3 191 341-532 372-604 (608)
318 PF00515 TPR_1: Tetratricopept 85.1 2.8 6.1E-05 23.4 4.3 31 506-536 2-32 (34)
319 KOG1464 COP9 signalosome, subu 84.8 28 0.0006 30.9 18.4 154 345-498 42-219 (440)
320 PF11207 DUF2989: Protein of u 84.5 9.1 0.0002 32.4 8.6 73 417-490 123-198 (203)
321 COG4455 ImpE Protein of avirul 84.1 10 0.00022 32.5 8.5 54 162-216 9-62 (273)
322 PF13374 TPR_10: Tetratricopep 83.9 2.7 5.9E-05 24.7 4.2 27 155-181 3-29 (42)
323 PF07719 TPR_2: Tetratricopept 83.8 3.2 6.9E-05 23.0 4.2 28 472-499 3-30 (34)
324 COG4455 ImpE Protein of avirul 83.7 9.5 0.00021 32.6 8.3 76 87-163 4-81 (273)
325 PF02259 FAT: FAT domain; Int 83.2 42 0.00092 31.8 20.8 66 399-464 145-213 (352)
326 COG4785 NlpI Lipoprotein NlpI, 82.9 30 0.00064 29.8 19.1 163 292-464 94-266 (297)
327 PRK15180 Vi polysaccharide bio 82.3 51 0.0011 32.1 13.3 133 199-336 299-431 (831)
328 PF08424 NRDE-2: NRDE-2, neces 82.2 44 0.00096 31.3 17.0 118 417-536 48-185 (321)
329 PF04097 Nic96: Nup93/Nic96; 82.0 68 0.0015 33.4 24.2 69 85-155 113-188 (613)
330 PRK11619 lytic murein transgly 80.9 76 0.0017 33.2 31.2 58 438-496 315-372 (644)
331 PF10345 Cohesin_load: Cohesin 80.7 76 0.0017 33.0 39.7 431 65-497 38-604 (608)
332 PF13762 MNE1: Mitochondrial s 79.4 30 0.00066 27.7 10.8 92 427-518 29-128 (145)
333 PF13181 TPR_8: Tetratricopept 79.1 6.2 0.00013 21.9 4.3 25 473-497 4-28 (34)
334 PRK09687 putative lyase; Provi 78.9 53 0.0011 30.1 26.8 138 399-552 141-279 (280)
335 KOG4648 Uncharacterized conser 78.6 15 0.00032 33.8 8.2 88 374-463 106-193 (536)
336 KOG4077 Cytochrome c oxidase, 77.8 16 0.00035 28.1 6.9 46 454-499 68-113 (149)
337 PF13181 TPR_8: Tetratricopept 77.7 5.7 0.00012 22.0 3.9 30 506-535 2-31 (34)
338 KOG1464 COP9 signalosome, subu 77.5 52 0.0011 29.3 18.0 48 241-288 42-92 (440)
339 KOG0276 Vesicle coat complex C 77.4 31 0.00067 34.5 10.5 101 375-496 647-747 (794)
340 PF07163 Pex26: Pex26 protein; 77.0 32 0.0007 30.8 9.6 88 90-177 89-181 (309)
341 KOG0276 Vesicle coat complex C 76.6 38 0.00081 34.0 10.8 101 410-531 647-747 (794)
342 PF07575 Nucleopor_Nup85: Nup8 76.6 97 0.0021 31.9 16.3 44 350-393 390-433 (566)
343 KOG2396 HAT (Half-A-TPR) repea 76.6 81 0.0018 31.0 39.8 98 432-533 456-558 (568)
344 KOG4234 TPR repeat-containing 76.4 37 0.00079 28.8 9.3 95 374-471 104-202 (271)
345 PF07721 TPR_4: Tetratricopept 76.1 4.5 9.7E-05 21.1 2.8 17 160-176 7-23 (26)
346 TIGR03504 FimV_Cterm FimV C-te 75.3 6.6 0.00014 23.8 3.7 24 476-499 5-28 (44)
347 PF11848 DUF3368: Domain of un 75.1 11 0.00024 23.4 4.8 33 516-548 13-45 (48)
348 KOG4077 Cytochrome c oxidase, 74.6 22 0.00049 27.4 7.0 46 173-218 68-113 (149)
349 PF13174 TPR_6: Tetratricopept 74.2 4.4 9.5E-05 22.2 2.7 22 512-533 7-28 (33)
350 PF07163 Pex26: Pex26 protein; 74.0 47 0.001 29.9 9.8 89 124-212 88-181 (309)
351 COG3947 Response regulator con 71.7 79 0.0017 28.7 16.0 69 230-299 283-356 (361)
352 PF13762 MNE1: Mitochondrial s 70.9 53 0.0011 26.4 10.6 81 403-483 42-128 (145)
353 PRK12798 chemotaxis protein; R 69.6 1.1E+02 0.0024 29.5 20.7 189 93-290 90-286 (421)
354 COG0735 Fur Fe2+/Zn2+ uptake r 69.2 19 0.00042 29.0 6.3 45 511-555 26-70 (145)
355 KOG0991 Replication factor C, 69.1 80 0.0017 27.7 12.5 51 165-217 170-220 (333)
356 TIGR02561 HrpB1_HrpK type III 69.1 59 0.0013 26.2 11.7 52 412-465 22-74 (153)
357 COG1747 Uncharacterized N-term 67.9 1.3E+02 0.0029 29.8 24.1 176 331-515 66-249 (711)
358 PRK09687 putative lyase; Provi 67.3 1E+02 0.0022 28.2 26.8 137 364-516 141-278 (280)
359 cd08819 CARD_MDA5_2 Caspase ac 66.4 45 0.00098 23.9 7.0 64 104-173 22-85 (88)
360 PF11846 DUF3366: Domain of un 66.1 23 0.00051 30.2 6.7 33 116-148 141-173 (193)
361 PF11846 DUF3366: Domain of un 65.8 30 0.00065 29.5 7.2 52 447-498 120-172 (193)
362 PF06552 TOM20_plant: Plant sp 65.8 77 0.0017 26.5 8.9 74 417-500 52-137 (186)
363 COG3947 Response regulator con 65.6 1.1E+02 0.0023 27.9 16.9 56 440-496 284-339 (361)
364 KOG2066 Vacuolar assembly/sort 65.5 1.8E+02 0.004 30.5 26.4 102 126-238 363-467 (846)
365 PF08311 Mad3_BUB1_I: Mad3/BUB 64.8 61 0.0013 25.3 8.1 42 102-143 81-123 (126)
366 PF14689 SPOB_a: Sensor_kinase 64.7 16 0.00035 24.2 4.1 29 504-532 22-50 (62)
367 smart00028 TPR Tetratricopepti 64.7 12 0.00026 19.6 3.3 25 473-497 4-28 (34)
368 PF10579 Rapsyn_N: Rapsyn N-te 63.8 29 0.00063 24.3 5.2 21 402-422 45-65 (80)
369 KOG4648 Uncharacterized conser 63.8 50 0.0011 30.6 8.1 91 339-434 106-197 (536)
370 PF10579 Rapsyn_N: Rapsyn N-te 63.4 20 0.00044 25.0 4.4 56 51-106 9-65 (80)
371 KOG2297 Predicted translation 63.3 1.2E+02 0.0027 27.7 14.3 75 232-316 261-341 (412)
372 cd00280 TRFH Telomeric Repeat 63.2 90 0.0019 26.2 12.0 48 135-182 85-139 (200)
373 KOG4507 Uncharacterized conser 63.2 37 0.00079 33.9 7.7 114 437-552 609-722 (886)
374 PF11848 DUF3368: Domain of un 63.1 30 0.00065 21.5 4.9 33 95-127 13-45 (48)
375 PF02259 FAT: FAT domain; Int 62.8 1.4E+02 0.003 28.2 25.6 65 364-428 145-212 (352)
376 PF11663 Toxin_YhaV: Toxin wit 62.3 8.5 0.00018 30.0 2.8 29 484-514 109-137 (140)
377 KOG4507 Uncharacterized conser 62.0 79 0.0017 31.8 9.6 100 377-478 619-718 (886)
378 KOG2582 COP9 signalosome, subu 61.5 1.5E+02 0.0032 28.0 19.9 56 48-103 38-94 (422)
379 TIGR02508 type_III_yscG type I 61.4 64 0.0014 23.9 8.0 51 479-535 48-98 (115)
380 COG0790 FOG: TPR repeat, SEL1 61.1 1.4E+02 0.0029 27.5 22.3 25 520-544 252-276 (292)
381 PF06552 TOM20_plant: Plant sp 59.9 1E+02 0.0022 25.8 10.6 74 451-534 51-136 (186)
382 PHA02875 ankyrin repeat protei 59.2 1.8E+02 0.0039 28.4 16.6 114 374-505 108-230 (413)
383 PF10366 Vps39_1: Vacuolar sor 59.2 71 0.0015 24.2 7.3 27 402-428 41-67 (108)
384 PRK09462 fur ferric uptake reg 58.3 43 0.00093 27.1 6.5 36 485-520 32-67 (148)
385 PRK11639 zinc uptake transcrip 58.1 38 0.00083 28.1 6.3 60 461-521 17-76 (169)
386 PF10366 Vps39_1: Vacuolar sor 57.4 82 0.0018 23.8 8.5 27 472-498 41-67 (108)
387 TIGR02508 type_III_yscG type I 56.6 79 0.0017 23.4 7.9 15 411-425 50-64 (115)
388 cd07153 Fur_like Ferric uptake 56.5 20 0.00043 27.5 4.1 45 476-520 6-50 (116)
389 PF14689 SPOB_a: Sensor_kinase 56.3 31 0.00068 22.8 4.4 21 267-287 29-49 (62)
390 PRK10564 maltose regulon perip 56.0 24 0.00053 32.0 5.0 36 473-508 260-295 (303)
391 PF01475 FUR: Ferric uptake re 55.6 15 0.00032 28.4 3.3 47 510-556 12-58 (120)
392 COG5108 RPO41 Mitochondrial DN 55.1 1E+02 0.0023 31.5 9.3 47 159-205 33-81 (1117)
393 KOG0991 Replication factor C, 55.0 1.5E+02 0.0032 26.1 12.7 36 398-434 237-272 (333)
394 cd00280 TRFH Telomeric Repeat 54.7 91 0.002 26.2 7.5 21 443-463 119-139 (200)
395 KOG2034 Vacuolar sorting prote 53.7 3.1E+02 0.0068 29.4 27.5 336 92-460 366-746 (911)
396 KOG0890 Protein kinase of the 53.3 5E+02 0.011 31.7 25.2 115 159-285 1388-1507(2382)
397 KOG2297 Predicted translation 52.3 1.9E+02 0.0042 26.6 19.6 19 401-419 322-340 (412)
398 PF12862 Apc5: Anaphase-promot 51.8 82 0.0018 22.9 6.5 21 513-533 49-69 (94)
399 PRK07003 DNA polymerase III su 51.7 3.1E+02 0.0066 29.4 12.4 33 153-186 245-277 (830)
400 PF03745 DUF309: Domain of unk 51.0 56 0.0012 21.7 4.9 32 96-127 11-42 (62)
401 KOG2659 LisH motif-containing 50.9 1.7E+02 0.0037 25.6 9.1 72 73-146 15-91 (228)
402 PF08424 NRDE-2: NRDE-2, neces 50.3 2.2E+02 0.0048 26.7 17.5 79 101-181 48-129 (321)
403 PF09670 Cas_Cas02710: CRISPR- 50.0 2.1E+02 0.0046 27.6 10.7 56 92-148 139-198 (379)
404 KOG3364 Membrane protein invol 49.5 1.3E+02 0.0028 23.8 10.5 66 433-499 30-100 (149)
405 cd08819 CARD_MDA5_2 Caspase ac 49.4 97 0.0021 22.3 7.5 65 349-419 21-85 (88)
406 PRK11619 lytic murein transgly 49.3 3.4E+02 0.0074 28.6 39.5 51 341-392 323-373 (644)
407 COG2909 MalT ATP-dependent tra 48.9 3.7E+02 0.0081 28.9 35.9 226 305-530 424-684 (894)
408 PRK10564 maltose regulon perip 48.7 43 0.00092 30.6 5.3 35 224-258 255-289 (303)
409 PF11838 ERAP1_C: ERAP1-like C 48.4 2.3E+02 0.005 26.4 18.4 80 382-464 147-230 (324)
410 PF12926 MOZART2: Mitotic-spin 48.3 99 0.0022 22.1 7.8 43 456-498 29-71 (88)
411 PF04190 DUF410: Protein of un 47.8 2.1E+02 0.0046 25.8 18.1 25 225-249 89-113 (260)
412 PF03745 DUF309: Domain of unk 47.4 80 0.0017 20.9 5.2 47 130-176 10-61 (62)
413 KOG1586 Protein required for f 47.2 2E+02 0.0044 25.4 22.1 18 273-290 166-183 (288)
414 PF10475 DUF2450: Protein of u 46.4 1.8E+02 0.0039 26.8 9.3 21 260-280 196-216 (291)
415 PF10475 DUF2450: Protein of u 46.3 2.1E+02 0.0046 26.4 9.8 53 124-182 103-155 (291)
416 KOG0989 Replication factor C, 46.1 2.5E+02 0.0054 26.0 11.5 52 65-118 191-242 (346)
417 PF09986 DUF2225: Uncharacteri 45.7 2.1E+02 0.0045 25.0 11.5 26 512-537 172-197 (214)
418 PF14669 Asp_Glu_race_2: Putat 45.5 1.9E+02 0.0041 24.6 15.9 55 231-285 137-205 (233)
419 PRK10941 hypothetical protein; 45.2 2.4E+02 0.0052 25.7 10.0 58 440-498 186-243 (269)
420 PF06855 DUF1250: Protein of u 45.1 30 0.00065 21.3 2.7 41 71-111 2-42 (46)
421 PF09454 Vps23_core: Vps23 cor 44.2 50 0.0011 22.2 3.9 50 467-517 5-54 (65)
422 PRK13342 recombination factor 44.0 3.2E+02 0.007 26.8 19.5 36 413-448 243-278 (413)
423 PF12926 MOZART2: Mitotic-spin 44.0 1.2E+02 0.0026 21.7 7.9 41 140-180 29-69 (88)
424 COG0735 Fur Fe2+/Zn2+ uptake r 43.9 1.3E+02 0.0028 24.2 7.0 43 108-151 10-52 (145)
425 PF11663 Toxin_YhaV: Toxin wit 43.9 34 0.00073 26.8 3.4 21 414-434 109-129 (140)
426 COG2909 MalT ATP-dependent tra 43.6 4.5E+02 0.0098 28.3 30.0 228 198-425 424-684 (894)
427 PF14853 Fis1_TPR_C: Fis1 C-te 42.9 64 0.0014 20.6 4.0 23 513-535 9-31 (53)
428 KOG4567 GTPase-activating prot 42.8 1.7E+02 0.0038 26.9 8.0 72 139-215 263-344 (370)
429 PF11817 Foie-gras_1: Foie gra 42.4 1.2E+02 0.0025 27.2 7.3 57 475-531 183-244 (247)
430 COG2137 OraA Uncharacterized p 41.7 2.1E+02 0.0045 23.9 10.9 110 419-532 54-165 (174)
431 KOG2063 Vacuolar assembly/sort 41.6 5E+02 0.011 28.3 18.4 116 121-238 506-638 (877)
432 PF13934 ELYS: Nuclear pore co 41.4 2.5E+02 0.0054 24.7 14.9 106 402-518 78-185 (226)
433 PF12862 Apc5: Anaphase-promot 41.1 1.4E+02 0.003 21.7 6.9 17 410-426 51-67 (94)
434 PRK11639 zinc uptake transcrip 41.0 1.4E+02 0.0031 24.7 7.1 64 424-488 15-78 (169)
435 PF09868 DUF2095: Uncharacteri 40.9 1.2E+02 0.0026 22.9 5.6 34 91-125 68-101 (128)
436 PRK15180 Vi polysaccharide bio 40.9 3.7E+02 0.008 26.6 34.3 124 91-218 296-420 (831)
437 PRK08691 DNA polymerase III su 40.7 4.7E+02 0.01 27.7 13.9 73 113-188 194-279 (709)
438 PRK14956 DNA polymerase III su 40.5 3.9E+02 0.0085 26.8 12.7 32 113-146 196-227 (484)
439 PF15297 CKAP2_C: Cytoskeleton 40.2 3.2E+02 0.007 25.7 10.1 64 451-516 119-186 (353)
440 KOG2062 26S proteasome regulat 39.7 4.8E+02 0.01 27.5 19.9 310 134-453 38-358 (929)
441 PRK08691 DNA polymerase III su 39.5 4.9E+02 0.011 27.6 11.9 85 416-503 180-278 (709)
442 smart00777 Mad3_BUB1_I Mad3/BU 38.8 1.9E+02 0.0041 22.6 7.1 74 205-285 49-123 (125)
443 PRK09462 fur ferric uptake reg 38.5 1.7E+02 0.0036 23.7 7.0 64 423-487 5-69 (148)
444 PRK10941 hypothetical protein; 38.3 3.1E+02 0.0067 25.0 10.9 59 370-429 186-244 (269)
445 KOG0292 Vesicle coat complex C 38.1 95 0.0021 33.0 6.4 76 127-217 651-726 (1202)
446 KOG4567 GTPase-activating prot 37.9 2.3E+02 0.0049 26.2 7.9 44 350-393 263-306 (370)
447 PF09477 Type_III_YscG: Bacter 37.7 1.8E+02 0.0039 22.0 9.2 79 450-535 21-99 (116)
448 KOG3364 Membrane protein invol 37.5 2.1E+02 0.0046 22.8 9.1 68 187-255 30-100 (149)
449 PF11817 Foie-gras_1: Foie gra 37.2 2.8E+02 0.0061 24.8 8.9 55 230-284 182-241 (247)
450 smart00638 LPD_N Lipoprotein N 37.0 4.9E+02 0.011 26.9 24.2 234 312-550 291-541 (574)
451 PF09454 Vps23_core: Vps23 cor 37.0 72 0.0016 21.4 3.8 49 398-447 6-54 (65)
452 PF02607 B12-binding_2: B12 bi 37.0 1.2E+02 0.0025 21.1 5.2 43 334-376 5-47 (79)
453 PRK09857 putative transposase; 36.9 2.7E+02 0.0058 25.7 8.8 65 439-504 210-274 (292)
454 KOG2422 Uncharacterized conser 36.8 4.7E+02 0.01 26.6 16.0 57 161-217 349-406 (665)
455 cd07153 Fur_like Ferric uptake 36.2 95 0.0021 23.6 5.1 45 90-134 6-50 (116)
456 KOG2471 TPR repeat-containing 35.6 3.3E+02 0.007 27.1 9.0 142 91-237 213-380 (696)
457 COG4003 Uncharacterized protei 35.6 1.5E+02 0.0032 20.8 5.0 33 91-124 38-70 (98)
458 PF02847 MA3: MA3 domain; Int 35.5 1.1E+02 0.0023 23.1 5.3 61 439-501 6-68 (113)
459 COG5159 RPN6 26S proteasome re 35.4 3.5E+02 0.0076 24.7 17.5 216 267-497 9-253 (421)
460 COG5187 RPN7 26S proteasome re 35.0 3.6E+02 0.0078 24.7 13.8 70 226-295 115-189 (412)
461 KOG2396 HAT (Half-A-TPR) repea 34.8 4.8E+02 0.01 26.1 34.7 74 153-230 104-178 (568)
462 PRK13342 recombination factor 34.8 4.5E+02 0.0097 25.8 18.3 43 232-274 233-278 (413)
463 KOG1586 Protein required for f 34.6 3.3E+02 0.0071 24.1 18.8 27 232-258 160-186 (288)
464 smart00386 HAT HAT (Half-A-TPR 34.2 77 0.0017 16.7 3.9 13 205-217 3-15 (33)
465 COG5108 RPO41 Mitochondrial DN 33.9 5.7E+02 0.012 26.7 10.8 77 194-273 33-115 (1117)
466 KOG0890 Protein kinase of the 33.8 9.9E+02 0.022 29.5 33.8 63 470-535 1670-1732(2382)
467 PRK14951 DNA polymerase III su 33.7 5.8E+02 0.013 26.7 12.7 74 112-188 198-284 (618)
468 KOG2063 Vacuolar assembly/sort 33.6 6.7E+02 0.015 27.4 19.8 115 263-377 506-638 (877)
469 PF11768 DUF3312: Protein of u 33.3 5E+02 0.011 26.3 10.2 23 231-253 413-435 (545)
470 KOG4279 Serine/threonine prote 33.1 6.2E+02 0.013 26.9 12.8 175 347-539 180-400 (1226)
471 COG4976 Predicted methyltransf 32.6 2.6E+02 0.0057 24.6 7.2 54 445-499 5-58 (287)
472 PRK14951 DNA polymerase III su 32.5 6.1E+02 0.013 26.6 12.6 85 416-503 185-283 (618)
473 PF14561 TPR_20: Tetratricopep 32.4 2E+02 0.0042 20.9 8.4 30 118-147 21-50 (90)
474 TIGR01228 hutU urocanate hydra 32.3 5.2E+02 0.011 25.8 10.7 22 515-536 403-424 (545)
475 PF01475 FUR: Ferric uptake re 32.3 90 0.0019 24.0 4.4 45 89-133 12-56 (120)
476 PRK06645 DNA polymerase III su 32.1 5.6E+02 0.012 26.0 11.2 73 113-188 203-291 (507)
477 PRK13341 recombination factor 32.0 6.7E+02 0.014 26.9 18.1 69 329-397 257-330 (725)
478 PF02847 MA3: MA3 domain; Int 31.6 2.3E+02 0.0049 21.3 6.8 21 371-391 8-28 (113)
479 PRK09857 putative transposase; 31.4 3.1E+02 0.0068 25.3 8.3 66 473-539 209-274 (292)
480 KOG1308 Hsp70-interacting prot 31.1 77 0.0017 29.5 4.1 89 413-504 127-216 (377)
481 PHA03100 ankyrin repeat protei 31.0 5.5E+02 0.012 25.6 11.3 241 232-502 38-308 (480)
482 PF11123 DNA_Packaging_2: DNA 30.7 1.4E+02 0.0029 20.6 4.1 30 452-482 14-43 (82)
483 KOG3636 Uncharacterized conser 30.2 5.3E+02 0.012 25.2 11.7 88 427-516 175-271 (669)
484 COG3682 Predicted transcriptio 30.1 1E+02 0.0022 23.9 4.1 32 523-555 22-53 (123)
485 KOG3807 Predicted membrane pro 29.9 4.7E+02 0.01 24.5 13.3 18 201-218 287-304 (556)
486 PF09670 Cas_Cas02710: CRISPR- 29.9 5.2E+02 0.011 25.0 12.4 60 334-394 135-198 (379)
487 PF15297 CKAP2_C: Cytoskeleton 29.8 4.9E+02 0.011 24.6 9.3 65 415-481 118-186 (353)
488 PF08461 HTH_12: Ribonuclease 29.7 1.1E+02 0.0024 20.6 3.8 43 477-519 4-46 (66)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 29.7 2.7E+02 0.0059 21.7 9.6 43 207-250 81-123 (126)
490 KOG0687 26S proteasome regulat 29.7 4.7E+02 0.01 24.5 18.2 98 226-323 104-208 (393)
491 PF10255 Paf67: RNA polymerase 29.6 4.4E+02 0.0095 25.7 9.1 62 192-253 125-191 (404)
492 KOG0376 Serine-threonine phosp 29.0 1.5E+02 0.0032 29.1 5.8 103 372-480 11-115 (476)
493 KOG1308 Hsp70-interacting prot 28.9 45 0.00097 30.9 2.3 85 131-218 126-211 (377)
494 PF04762 IKI3: IKI3 family; I 28.5 8.6E+02 0.019 27.1 16.7 58 55-112 701-761 (928)
495 PHA01351 putative minor struct 28.2 7.1E+02 0.015 26.0 22.6 143 34-184 430-591 (1070)
496 KOG0376 Serine-threonine phosp 27.7 1.7E+02 0.0038 28.7 6.0 50 166-217 16-66 (476)
497 KOG4642 Chaperone-dependent E3 27.7 4.4E+02 0.0096 23.5 12.3 132 140-287 8-143 (284)
498 COG2812 DnaX DNA polymerase II 27.6 6.6E+02 0.014 25.5 11.1 47 66-114 182-228 (515)
499 PF14853 Fis1_TPR_C: Fis1 C-te 27.5 1.7E+02 0.0037 18.7 5.0 20 409-428 10-29 (53)
500 KOG0508 Ankyrin repeat protein 27.3 6.2E+02 0.014 25.1 12.5 108 165-284 92-203 (615)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-69 Score=559.34 Aligned_cols=497 Identities=17% Similarity=0.186 Sum_probs=466.3
Q ss_pred HHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 008727 50 SLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS 128 (556)
Q Consensus 50 ~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 128 (556)
..+..+++.+.+ ++...|+++|+++....-+.++...++.++..|.+.|.+++|..+++.|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 334445555544 568899999999966555678888899999999999999999999999875 899999999999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
|++.|+++.|.++|+.|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 286 (556)
.++|+.|... +..|+ ..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 527 l~lf~~M~~~-Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 527 FGAYGIMRSK-NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999987 66555 89999999999999999999999999976 67999999999999999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCH
Q 008727 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTL 365 (556)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 365 (556)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.++. .|+.++|.++|++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999977 57999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHHHHHCCCC
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V-------------------GEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~ 502 (556)
++.|++++|.+++++|.+.|+.||..+|++++..|.+ + +..++|..+|++|++.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876432 1 2346799999999999999
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 008727 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (556)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 552 (556)
||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|+++++
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999998888999999999999999989999999999999999875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-68 Score=547.31 Aligned_cols=468 Identities=18% Similarity=0.207 Sum_probs=445.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|..++|.++|+.|.. |+..+||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45777889999999999999999999999999995 56788888999999999999999999999964 79999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |..| +..+|+.||.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999987 6555 589999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK--LGVAPRTNDYREFILGLIVERRICEAKE 317 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (556)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008727 318 LGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396 (556)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 396 (556)
+|+.|.+.++.|+..+||.++.+|. .|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 589999999999999999999999999999999999999999999999999999
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 397 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----c-------------------CCHHHHHHHHHHhhh
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----E-------------------TNLQAAFEVFNKSVN 533 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~ 533 (556)
+.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 1 234789999999999
Q ss_pred CCCcccHHHHHHHHHHHhhhh
Q 008727 534 HDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.|+.|+..+|..+|.++|+.+
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccc
Confidence 999999999999998877654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-66 Score=542.68 Aligned_cols=480 Identities=16% Similarity=0.129 Sum_probs=309.2
Q ss_pred HHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcC
Q 008727 54 RVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (556)
Q Consensus 54 ~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (556)
.++..+.+ +.++.|+++|+.+. ..|+.||..+|+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 33443333 33556666666663 33666666666666666666666666666666666666666666677777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHH
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (556)
|++++|.++|+.|. .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.+++
T Consensus 236 g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 77777777777775 34777777777777777888888888888877777778777777777777777777777777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008727 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (556)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 292 (556)
..+.+. |..| +..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+
T Consensus 312 ~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 312 GYVVKT-GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHh-CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 777766 5444 36777777777777777777777777775 35777777777777777777777777777777777
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (556)
Q Consensus 293 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 371 (556)
.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..++|.++..|. .|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 77777777777777777777777777777777777777777777777655 3566666666666643 344555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+.+|++.|+.++|.++|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++.+|++.|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 5555555555555555555543 355555555555555555555555555555555555544444444444444444444
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 4444444443 34555555555555555555555555555555555555555555555555555555555555555
Q ss_pred h-hCCCcccHHHHHHHHHHHhhhh
Q 008727 532 V-NHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 532 ~-~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
. +.++.|+..+|..+++.|+|.|
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCC
Confidence 5 4455555555555555555554
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-66 Score=542.95 Aligned_cols=489 Identities=13% Similarity=0.150 Sum_probs=352.6
Q ss_pred CHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHH-----------------------------------H
Q 008727 48 SPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSI-----------------------------------L 91 (556)
Q Consensus 48 ~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-----------------------------------l 91 (556)
++...+.++..+.. +.+..|+.+|+.+. +.|+.|+..+|..+ +
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 44444555555554 35667777777663 34555555555444 4
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.++++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 444555555555555555532 3455555666666666666666666666655555666666666666665555555
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
.+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|.. ++..+||.+|.+|++.|++++|+++|++
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666666666666666666667777777888888888888887753 3467788888888888888888888888
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCH
Q 008727 252 LRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD 331 (556)
Q Consensus 252 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (556)
|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ++.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888753 567
Q ss_pred HHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 332 DVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 332 ~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
.+||.++.+|. .|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+++|.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 78888888766 46788888888888888888888888888888888888888888888888877777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHC------------------------------CCCCCHhHHHHHHHHHhhcCChhhHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRK------------------------------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQ 460 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (556)
++.|++++|.++|++|.+. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 7777777777777666431 2344444444444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccH
Q 008727 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 540 (556)
+.+.|+.+|..++|+||++|+++|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.|+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 455555555555556666666667777777766665 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcC
Q 008727 541 SILSTFMISLCRRVLI 556 (556)
Q Consensus 541 ~~~~~l~~~~~~~~~~ 556 (556)
.+|..+|.+|++.|++
T Consensus 590 ~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 590 VTFISLLCACSRSGMV 605 (857)
T ss_pred ccHHHHHHHHhhcChH
Confidence 9999999999998863
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-64 Score=522.06 Aligned_cols=468 Identities=16% Similarity=0.183 Sum_probs=440.9
Q ss_pred HHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 008727 51 LVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (556)
Q Consensus 51 ~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (556)
....++..+.. +++..|+++|+|+....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34555555554 56889999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
++.|+++.|.++|++|. .||..+||+++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|+..|+.+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999996 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+++..+.+. |..+ +..+++.|+.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|.++|++|.+
T Consensus 245 ~l~~~~~~~-g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 245 QLHCCVLKT-GVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHh-CCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999887 6554 588999999999999999999999999974 5999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHH
Q 008727 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTL 368 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (556)
.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.++..++|.++.+|. .|++++|.++|++|.+ ||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 99999999999999999999999999999999999999999999999999987 5899999999999964 788999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhh
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~ 447 (556)
+.+|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986 6999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHH
Q 008727 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++. ++.|+ ..+|..++..|++.|++++|.+
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999876 478999999999999999999999999999997 44564 6799999999999999999999
Q ss_pred HHHHhhhCCCc
Q 008727 527 VFNKSVNHDVM 537 (556)
Q Consensus 527 ~~~~m~~~~~~ 537 (556)
+++.|.+.|+.
T Consensus 550 v~~~m~~~g~~ 560 (697)
T PLN03081 550 VVETLKRKGLS 560 (697)
T ss_pred HHHHHHHcCCc
Confidence 99999998864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-61 Score=498.30 Aligned_cols=458 Identities=14% Similarity=0.151 Sum_probs=433.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
...+..+|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++.+.|.+++..|.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999865 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |..| +..+|+.++.++++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~ 236 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDA-EPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhc
Confidence 999999999999999999999964 78999999999999999999999999999987 6555 47899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 5889999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008727 319 GEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF 397 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (556)
|++|.+.|+.||..+|+.++.++.+ |++++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999874 79999999999999999999999999999999999999999999999975
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHHHHHHH
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA-SGCSGNLKTYNIL 476 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 476 (556)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+.++. +...|..++..|++.|-
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCC
Confidence 99999999999999999876 68999999999999999999999999999999766543 45688999999999874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-28 Score=262.41 Aligned_cols=450 Identities=13% Similarity=0.053 Sum_probs=328.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 88 HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
..++..+.+.|++++|.++++.+.... +.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHC
Confidence 344455555566666666666555532 445666677777777777777777777776654332 455666677777777
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 247 (556)
|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++... .|.+...+..++..+.+.|++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777776654 234556666777777777777777777777655 44455566667777777888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 248 VLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 248 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
+++.+.+.. ..+...|..+..++...|++++|...++.+.+... .+...+..+...+...|++++|...++.+.+..+
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 887776542 34566777788888888888888888887776532 2344566677777788888888888887776543
Q ss_pred CCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH
Q 008727 328 TIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (556)
Q Consensus 328 ~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (556)
. +...+..+...+ ..|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...++ +..++..+
T Consensus 667 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l 742 (899)
T TIGR02917 667 D-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKL 742 (899)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHH
Confidence 3 344455554443 4578888888888887765 34566677777888888888888888888877653 44667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 008727 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 407 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
..++.+.|+.++|.+.++++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+..+++.+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 8888888888888888888887654 367788888888888999999999999988775 5678888888999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 487 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.+|+..++++.+... -+..++..+...+.+.|++++|.++++++++.++. +..++..+..++++.|
T Consensus 820 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 820 PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcC
Confidence 779999999886532 24566777888899999999999999999998876 7888888999998876
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-28 Score=264.03 Aligned_cols=455 Identities=12% Similarity=0.052 Sum_probs=392.0
Q ss_pred ccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHH
Q 008727 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 140 (556)
.+++..|+..+..+... .+.++..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35677788888776543 34577889999999999999999999999998865 5567788889999999999999999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.|+.+....+. +..++..+...+.+.|+.++|...++++.+.+ +.+...+..+...+...|++++|.++++.+...
T Consensus 521 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 596 (899)
T TIGR02917 521 RFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-- 596 (899)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--
Confidence 99999887544 78899999999999999999999999998865 345667788999999999999999999999876
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (556)
.|.+...|..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+.
T Consensus 597 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 673 (899)
T TIGR02917 597 -APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQI 673 (899)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 56667889999999999999999999999998763 23667788899999999999999999999987532 2456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 379 (556)
.+...+...|++++|.++++.+.+..+. +...+..+... +..|++++|.+.|+.+...+ |+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 8899999999999999999999887644 44455544444 45799999999999998875 44477788899999999
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 459 (556)
++++|.+.++.+.+..+. +...+..+...|...|+.++|.+.|+++.+... ++..+++.+...+...|+ .+|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 999999999999887654 788999999999999999999999999998764 478899999999999999 88999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 460 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++.+.. +-+..++..+...+...|++++|.+.++++.+.+.. +..++..+..++.+.|+.++|.+++++|++
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 998863 456677888999999999999999999999988654 889999999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.5e-20 Score=201.44 Aligned_cols=457 Identities=13% Similarity=0.048 Sum_probs=320.1
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC----------------C---------
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI----------------T--------- 116 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~--------- 116 (556)
++++.|+..++.+.+..+ .++..+..+...+...|+.++|.+.++++.+... .
T Consensus 161 g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred ccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 567889998888866542 3566777888888889999999999888754320 0
Q ss_pred -------CCHHhH---------------------HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 008727 117 -------LDSSVY---------------------RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDG 168 (556)
Q Consensus 117 -------~~~~~~---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 168 (556)
|+.... ......+...|++++|+..|++..+..+. +..++..|..++.+.|
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 000000 01134466789999999999999886543 7889999999999999
Q ss_pred CHhHHHHHHHHHHhCCCccCh-hhH------------HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 008727 169 YIDNALKMFDEMSHRGVEFST-IGF------------GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (556)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~~-~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (556)
++++|+..|++..+....... ..+ ......+.+.|++++|+..|+++... .|.+...+..+...
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDV 394 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999998876432211 111 12234567889999999999999977 56667778888999
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH------------------------------------------HHHHh
Q 008727 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA------------------------------------------EEFKL 273 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll------------------------------------------~~~~~ 273 (556)
+...|++++|++.|++..+.... +...+..+. ..+..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999998875321 233333222 23345
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.|++++|++.|++..+.... +...+..+...+.+.|++++|...++.+.+..+......+...+.....++.++|+..+
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 57777777777776664322 23345556667777777777777777776654433333333333334456777777777
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 354 NFMIEKGRVPTLS---------TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 354 ~~~~~~~~~~~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+.+......++.. .+......+...|+.++|.++++. .+.+...+..+...+.+.|+.++|+..|+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6654332222211 122345567778888888888772 22355677788888999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--C
Q 008727 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV--A 502 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~ 502 (556)
+..+.... +...+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|.++++++..... .
T Consensus 628 ~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 628 RVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99987543 67788899999999999999999999887652 34566677788889999999999999999886522 1
Q ss_pred C---CHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 503 P---DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 503 p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
| +...+..+...+...|++++|++.|++.+.
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 224556667788899999999999998764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=7.9e-20 Score=198.68 Aligned_cols=492 Identities=11% Similarity=0.068 Sum_probs=332.5
Q ss_pred hHHHHHHhcCCCCCCCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHH--------------HHHHHHHHHHhc
Q 008727 33 LLEQTLHQLGLRDSLSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPL--------------SYHSILKSLSLS 97 (556)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~--------------~~~~ll~~~~~~ 97 (556)
...+.|.++-...+-.|..+......... ++...|.+.++.+.+..+-.+... ....+.+.+.+.
T Consensus 46 ~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 46 LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 44566666543333456666655555444 568889998888765542221111 112334567889
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHh-HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHH
Q 008727 98 RQINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM 176 (556)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (556)
|++++|.+.|+.+.+.+ +++... ...........|+.++|++.++++.+..+. +...+..+...+...|+.++|++.
T Consensus 126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999998765 444322 112222233569999999999999887544 778899999999999999999999
Q ss_pred HHHHHhCCC------------------c--------------cChhhH---------------------HHHHHHHHhhC
Q 008727 177 FDEMSHRGV------------------E--------------FSTIGF---------------------GVFIWKFCENA 203 (556)
Q Consensus 177 ~~~m~~~~~------------------~--------------~~~~~~---------------------~~li~~~~~~g 203 (556)
|+++.+... . |+...+ ......+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 998755321 0 110000 01123456679
Q ss_pred cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHH------------HHHHH
Q 008727 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYR------------IVAEE 270 (556)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ll~~ 270 (556)
++++|+..|++.... .|.+..++..+...+.+.|++++|+..|++..+..... +...+. .....
T Consensus 284 ~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999876 67778888889999999999999999999988763221 111121 12345
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS---------- 340 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---------- 340 (556)
+.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+++++..+... ..+..+...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHH
Confidence 6788999999999999988643 2344566777889999999999999999987654432 222222111
Q ss_pred ---------------------------------HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008727 341 ---------------------------------VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387 (556)
Q Consensus 341 ---------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 387 (556)
...|++++|++.|++..+.... +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1246777777777777665422 355566677778888888888888
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------------------------
Q 008727 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-------------------------------------- 429 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------------------------------------- 429 (556)
++.+.+..+. +...+..+...+...++.++|+..++.+...
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8877664432 3333322222333334444443333321100
Q ss_pred -CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhh
Q 008727 430 -GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATT 507 (556)
Q Consensus 430 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~ 507 (556)
....+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..|...|++++|.+.++...+. .| +...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~ 673 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNT 673 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHH
Confidence 012344556677788888999999999999998864 456788889999999999999999999988754 33 3455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+..+..++...|++++|.++++++++...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 66677888899999999999999887653
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-20 Score=173.69 Aligned_cols=426 Identities=13% Similarity=0.043 Sum_probs=295.5
Q ss_pred hhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChH
Q 008727 57 NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 57 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (556)
+.+..++...|.+-...+.++... +....-.+-..+....+.+.....-....+.. +.-.++|..+...+-..|+++
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHH
Confidence 334445677777766666544322 11222223344555666666555444444433 456788888999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH-HHHHHHHhhCcHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG-VFIWKFCENAKLGQVLSMLDEV 215 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~ 215 (556)
+|+..++.+.+..++ .+..|..+..++...|+.+.|.+.|.+..+.+ |+..... .+-..+-..|++++|...+.+.
T Consensus 134 ~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 134 DALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999887544 67889999999999999999999998887753 4444332 2333445578888888888887
Q ss_pred HhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008727 216 RKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (556)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (556)
.+. .|.-..+|..|...+-.+|+...|+.-|++..+. .|+- ..|-.|-..|...+.+++|+..+.+.... .|
T Consensus 211 i~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 211 IET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred Hhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 765 5666788888888888999999999999888765 4443 56778888888888888888888776653 34
Q ss_pred Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 295 RT-NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372 (556)
Q Consensus 295 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 372 (556)
+. ..+..+...|...|.++.|...+++.++..+.. +..|+.+-.++. .|+..+|.+.+.+.+..... .....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 33 345556667778888888888888887765443 344554544444 57777777777777665322 345566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcCCh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLL 451 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 451 (556)
..|...|.++.|..+|....+..+. -...+|.+...|-+.|++++|+..+++..+- +|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhH
Confidence 7777777888888777777664322 2336777777777778888888777777764 454 45677777777777778
Q ss_pred hhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 452 RPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
+.|.+.+.+.+.. .|. ...++.|.+.|-..|++.+|+.-+++.+. ++||
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 8887777777763 344 45677777777777888888877777773 4555
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4e-21 Score=186.47 Aligned_cols=306 Identities=12% Similarity=0.062 Sum_probs=157.7
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 240 (556)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|...++.+... +..++ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455556666666666655431 23334555555555555555555555555443 11111 1123444555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
++++|.++|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 5555555555554431 12344455555555555555555555555444321111000
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
....+..+...+.+.|++++|...++++.+.... +.
T Consensus 179 -------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~ 214 (389)
T PRK11788 179 -------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CV 214 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CH
Confidence 0011223334455556666666666655544322 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
..+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|.+.++++.+. .|+...+..++..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 4555555666666666666666666665432222344556666666666666666666666654 34545555666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHhhhCCCcccHH
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARS 541 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 541 (556)
.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666543 4566666655555443 345666666666666655554444
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=183.63 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=148.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC---hhhHHHHHHHHHhhCcHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS---TIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~ 207 (556)
..|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444433211 333444444444444444444444444443221110 1233444444555555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
|...|+.+.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 126 A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 126 AEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555433 2333445555566666666666666666666554322211 1233344444555555555555
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008727 284 LKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (556)
++++.+.. |+
T Consensus 203 ~~~al~~~--p~-------------------------------------------------------------------- 212 (389)
T PRK11788 203 LKKALAAD--PQ-------------------------------------------------------------------- 212 (389)
T ss_pred HHHHHhHC--cC--------------------------------------------------------------------
Confidence 55544321 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|...|+.++|...++++.+. .|+...+..+..
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~ 290 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQ 290 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 111223333444555555555555555554332222334556666666666666666666666654 344445566666
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHh
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDAT 506 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 506 (556)
.+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666666666666666666653 4666666666655553 346666666666666655555544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=4.3e-17 Score=166.53 Aligned_cols=431 Identities=10% Similarity=-0.037 Sum_probs=256.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
+......+.+.|+++.|+..|++.++.. |+...|..+..+|.+.|++++|++.++...+..+. +..+|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4455667788899999999999988754 67788888899999999999999999999887543 67788889999999
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|+.-|......+.. +......++..+... .+.......... .+.....+..+.. |......+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILET---KPENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhc---CCCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999888766554321 111112222211111 122222222222 1111111111111 11111111111
Q ss_pred HHHHHHhhCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 247 KVLDELRIRECKPDF-IAYRIVAEE---FKLMGSVFEREVVLKKKRKLG-VAPR-TNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
.-+..-.+. .|+. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111110 1110 001111000 122356777777777776654 2232 2345555556667777777777777
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
..++..+......++........|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+..+. +.
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 7776543322222222233344677777777777776653 234566777777777888888888888887776543 55
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH------HHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL------KTYN 474 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 474 (556)
..+..+...+.+.|++++|+..+++..+.... +...|+.+...+...|++++|.+.|++..+..-..+. ..++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 66777777777888888888888877765322 4667777777888888888888888887764211111 1112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.....+...|++++|.+++++..+... .+...+..+...+.+.|++++|+++|++..+..
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 222233446788888888888775532 234457777778888888888888888776544
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.9e-17 Score=172.21 Aligned_cols=166 Identities=12% Similarity=0.101 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.++....-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.++|++.....+. +...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344455566677777788888888887776633 455666777777888888888888888887665322 566677777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|...+++..+... .+.. +..+...+...|+.++|+..++++... .|.+...+..+...+...+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCC
Confidence 777788888888888888776532 2333 666677777778888888888888766 56666666667777777788
Q ss_pred HHHHHHHHHHHhh
Q 008727 242 VEEAFKVLDELRI 254 (556)
Q Consensus 242 ~~~A~~~~~~m~~ 254 (556)
.+.|++.++....
T Consensus 166 ~e~Al~~l~~~~~ 178 (765)
T PRK10049 166 SAPALGAIDDANL 178 (765)
T ss_pred hHHHHHHHHhCCC
Confidence 8888877776553
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=2.3e-16 Score=164.26 Aligned_cols=214 Identities=9% Similarity=-0.030 Sum_probs=130.2
Q ss_pred HHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcC
Q 008727 53 ARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (556)
Q Consensus 53 ~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (556)
........++++..|+..|+.+....+ -+...+..+...+...|++++|+..+++..+.. +-|...+..+ ..+
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i--- 121 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI--- 121 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---
Confidence 344444455788899999999865542 357788889999999999999999999998875 3344444443 222
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCccChhhHHHH-HHHHHhhC
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVF-IWKFCENA 203 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g 203 (556)
+++++|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... .+.|...|
T Consensus 122 ~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 8888999999999877544 55566555555 5555 44444444 2222233344444444 67777788
Q ss_pred cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 204 KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 204 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
++++|++++..+.+. .+.+......|...|.. .++ +++..+++.. ++-|...+..+...+.+.|+.++|.+
T Consensus 197 dw~~Ai~lL~~L~k~---~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 197 QWSQADTLYNEARQQ---NTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred CHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888777766 23333333444444444 233 4444443321 12344555555555555555555555
Q ss_pred HHHH
Q 008727 283 VLKK 286 (556)
Q Consensus 283 ~~~~ 286 (556)
++++
T Consensus 269 ~L~~ 272 (987)
T PRK09782 269 YLIE 272 (987)
T ss_pred HHHh
Confidence 5444
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=5.3e-18 Score=172.45 Aligned_cols=334 Identities=10% Similarity=0.054 Sum_probs=235.7
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
..-...++..+.+.|++++|..+++........+.. .+..+..+....|++++|.+.++.+... .|.+...+..+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la 117 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVA 117 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 344556677788889999999999998887654433 4444555677799999999999999876 677778888888
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 313 (556)
..+...|++++|.+.|++..... +.+...+..+...+...|++++|...++.+......+.. .+.. +..+...|+++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~ 194 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLP 194 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHH
Confidence 99999999999999999988752 224567778888899999999999999887665433322 2222 23477788888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHH
Q 008727 314 EAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVY 388 (556)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~ 388 (556)
+|...++.+.+.....+......+... ...|++++|+..+++..+.. +.+...+..+...+...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 888888887766543333333332222 34577778888887777654 2345566667777777777774 67777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (556)
+...+..+. +...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|.+.++++.+. .|
T Consensus 274 ~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 274 RHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 777766543 5667777777777778888888877777765433 3455666777777778888888877777764 34
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 469 NL-KTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 469 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 43 23333456677778888888887777755
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.9e-17 Score=172.16 Aligned_cols=408 Identities=9% Similarity=0.002 Sum_probs=309.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHH
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF 195 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 195 (556)
+.+.....-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 5566677777888899999999999999997632 4466789999999999999999999999988864 2345566778
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
...+...|++++|+..++++... .|.+.. +..+...+...|+.++|+..+++..+.... +...+..+...+...+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88899999999999999999977 666666 888899999999999999999999987332 4555666777888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHcC-CCCCC--HHHH----
Q 008727 276 SVFEREVVLKKKRKLGVAPRT------NDYREFILGLI-----VERRI---CEAKELGEVIVSG-KFTID--DDVL---- 334 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~--~~~~---- 334 (556)
..++|++.++.... .|+. ......+.... ..+++ ++|.+.++.+.+. ...|+ ....
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876553 2221 01112222222 12234 6788888888754 11222 2111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---cHhhHHHHHHHH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT---DMESYNVMVSFL 410 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 410 (556)
..+...+..+++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1123346678999999999999987643 332 22235678999999999999999987754321 134566677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-----------CCC---HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGL-----------DPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
...|++++|.++++.+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987631 123 2345677788899999999999999998764 5668889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...+...|++++|++.+++..+. .|+ ...+......+.+.|++++|..+++++++..+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999965 455 556666677889999999999999999887653
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.4e-17 Score=167.78 Aligned_cols=331 Identities=11% Similarity=0.013 Sum_probs=194.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...++..+.+.|++++|..+++...... +-+...+..++.++...|+++.|...|+++....+. +...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445666777888888888888877765 445566666667777788888888888888776543 66778888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|...++.+... .|++...+..+. .+...|++++|.
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHHH-HHHHcCCHHHHH
Confidence 888888888888887753 224456667777788888888888888777654 333344443332 366778888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHH
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE----AKELGEVI 322 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 322 (556)
..++.+.+....++...+..+...+...|++++|+..+++..+.... +...+..+...+...|++++ |...++.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 88887766533334444455566677778888888888777765322 33445556666677777664 55555555
Q ss_pred HcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 323 VSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
.+..+. +...+..+... ...|++++|+..+++..+... .+......+..++.+.|++++|...++.+.+.++. +..
T Consensus 277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence 544322 22222222222 223444444444444444321 12233333444444444444444444444433221 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
.+..+..++...|+.++|...|++..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222223334444444444444444444
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.8e-18 Score=158.98 Aligned_cols=381 Identities=12% Similarity=0.034 Sum_probs=314.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-hHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLL 161 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li 161 (556)
-.++|..+..++-..|+++.|..+++.+++.. +-....|..+..++...|+.+.|...|.+..+. .|+.. +.+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45788889999999999999999999999976 557889999999999999999999999999876 34444 445556
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|+..+|...|.+..+... -=...|+.|...+-..|+...|++-|++.... .|.-...|..|...|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhc
Confidence 666678999999999999888643 23467888888888999999999999999976 67777889889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
+++|...|.+.... .|+ ...+..+...|...|.++.|+..+++.++. .|+ ...|+.+..++-..|++.+|...+
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999987765 454 467888888899999999999999998875 343 347999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (556)
...+...+......+|...-.-..|..++|..+|....+- .|. ...++.|...|-..|++++|+..|++.....+.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~- 420 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT- 420 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-
Confidence 9999876665555555554445578999999999988764 343 567888999999999999999999998875432
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILI 477 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li 477 (556)
=...|+.+...|-..|+++.|.+.+.+.+..+.. -...++.|...|-..|++.+|++-++...+. +|| +..|-.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNll 497 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHH
Confidence 3458999999999999999999999999886432 3568899999999999999999999999984 666 34454455
Q ss_pred HHH
Q 008727 478 SKF 480 (556)
Q Consensus 478 ~~~ 480 (556)
.+.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.7e-16 Score=159.73 Aligned_cols=424 Identities=11% Similarity=-0.018 Sum_probs=285.6
Q ss_pred hhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChH
Q 008727 57 NPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 57 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (556)
..+..+++..|+..|..+... .|++..|..+..++.+.|++++|++.++..++.. +.+...+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334456789999999988654 4678889999999999999999999999999876 557788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+|+.-|..+...+...+.. ...++.-+.. ..+........+.. +++...+..+ ..+......+....-+....
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccc
Confidence 9999988776543221222 1222221111 12222233322221 1122222222 12222111111111111111
Q ss_pred hccCCCCCchhhHHHHHHH---HhccCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 217 KRENSMINGSVIAVLIIHG---FCKGKRVEEAFKVLDELRIRE-CKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.. .+.....+..+... ....+++++|.+.|+...+.+ ..| +...|..+...+...|++++|+..+++..+.
T Consensus 285 ~~---~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 285 EL---DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cc---ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 11 11111111111111 123467889999999888764 233 3456777777888899999999999888775
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 292 VAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 292 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
.|+ ...|..+...+...|++++|...++.+++..+......++.....+..|++++|+..|++..+... .+...+..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHH
Confidence 343 346677777888899999999999988877544333333333344557899999999999887652 34666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh------HHHHHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS------FYNSLMEA 444 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~ 444 (556)
+...+.+.|++++|+..|+...+..+. +...++.+...+...|++++|++.|++..+.....+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 888899999999999999998876543 67789999999999999999999999988764321111 12222333
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445699999999999988764 344567889999999999999999999999865
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=9.1e-16 Score=156.55 Aligned_cols=448 Identities=12% Similarity=0.051 Sum_probs=270.4
Q ss_pred HHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc
Q 008727 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131 (556)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 131 (556)
..+.+-.+..++...|+..|+.+.+.....+ +..+ .++..+...|+.++|+..+++.... .+........+...+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 3444444455666677777776654432110 1122 6666666777777777777776621 12233334444556677
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
.|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 77777777777777766544 45666666777777777777777777776653 3444443333333334455457777
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
++++... .|.+...+..++..+.+.|-...|.++..+-... +.+. .+.-+ . .+.+.+ ..+.+
T Consensus 192 ~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l-~-------~~~~a~----~vr~a 253 (822)
T PRK14574 192 SSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL-E-------RDAAAE----QVRMA 253 (822)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH-H-------HHHHHH----HHhhc
Confidence 7777665 5555666666666677777766666555442211 1111 10000 0 000000 01111
Q ss_pred CCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHcCCC-CCC-HHH-----HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 292 VAPRTNDYREFILGLIVER---RICEAKELGEVIVSGKF-TID-DDV-----LNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 292 ~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~-~~~-~~~-----~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
..++.. ... -.+.|..-++.+...-. .|. ... .-.++.....++..++++.|+.+...+.
T Consensus 254 ~~~~~~----------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 254 VLPTRS----------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred cccccc----------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 101000 001 12334444444443211 121 111 2333344456788888888888888887
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-----FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL----- 431 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----- 431 (556)
+....+-..+.++|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+...
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 66667888888888888888999888888765431 22344457788888888899999998888887321
Q ss_pred ------CCC--H-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 432 ------DPD--V-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 432 ------~p~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
.|| - ..+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|++.++..... .
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~ 480 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--A 480 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--C
Confidence 122 1 234556667788889999999999887764 667888888888888899999999988777644 3
Q ss_pred C-CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 503 P-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 503 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
| +..+......++...|++++|..+.++..+..+
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 4 355566677777888899999888887766554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.6e-15 Score=156.41 Aligned_cols=441 Identities=9% Similarity=-0.040 Sum_probs=301.1
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 81 THSPLSYHSI-LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ-GKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 81 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
.|++.+.... .+.+.+.+++++|+.++.++.+.+ +.+......|...|.. .++ +.+..+++.. .+-++..+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHH
Confidence 3344444444 788889999999999999999887 4566667777777777 366 7777775532 234788899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCc-cChhhHHHH------------------------------HHHHHhhCcHHH
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVE-FSTIGFGVF------------------------------IWKFCENAKLGQ 207 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l------------------------------i~~~~~~g~~~~ 207 (556)
.+...|.+.|+.++|.+++.++...... |...++.-+ +..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887654322 333332222 333444455554
Q ss_pred HHHHHHHHHhcc-------CC-------------------CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-C-CCC
Q 008727 208 VLSMLDEVRKRE-------NS-------------------MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-E-CKP 259 (556)
Q Consensus 208 a~~~~~~~~~~~-------~~-------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~-~~p 259 (556)
++++...-.... +. .|.+......+.....+.|+.++|.++|+..... + -.+
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 444422100000 00 1112222222333455778899999999887662 1 223
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhc-CCCC---ChhhHHHHHHHHHhcC
Q 008727 260 DFIAYRIVAEEFKLMGS---VFEREVV----------------------LKKKRKL-GVAP---RTNDYREFILGLIVER 310 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~~~---~~~~~~~ll~~~~~~~ 310 (556)
+.....-++..|.+.+. ..++..+ .+..... +..| +...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 44445567777776655 3333222 1122111 2223 34455566666655 7
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008727 311 RICEAKELGEVIVSGKFTIDDDVL-NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389 (556)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 389 (556)
+.++|...+.......+ +.... .........|++++|...|+++... .|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88889998877776553 32221 1112224679999999999987654 3444455667778899999999999999
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 008727 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (556)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (556)
...+..+. +...+..+.......|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++..+.. +.+
T Consensus 567 qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99886533 3333334444445669999999999999986 5678889999999999999999999999999874 556
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...++.+..++...|++++|++.+++..+... -+...+..+..++...|++++|...+++..+..+.
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77888889999999999999999999987632 25677888999999999999999999999887754
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.8e-16 Score=150.00 Aligned_cols=471 Identities=11% Similarity=0.035 Sum_probs=349.6
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
...+++++..+-...+ .+|...+.|...+.-.|++..++++...+..... ..-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4466776666655444 5777888999999999999999999999887642 22345688899999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC----cHHHHHHHHHHHHh
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA----KLGQVLSMLDEVRK 217 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~ 217 (556)
|.+.......--+..+--|.+.+.+.|+.+.+...|+...+.. +-+..|..+|...|...+ ..+.|..++.....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9998776433224456678899999999999999999998863 234566666766777664 56788888888876
Q ss_pred ccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 008727 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL----RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL--- 290 (556)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 290 (556)
. .|.+...|..+...+-..+-+.. +.+|... ...+-.+.....|.+.......|++.+|...|......
T Consensus 409 ~---~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 409 Q---TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred c---ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6 57778888877777765554444 6666543 44555577888999999999999999999999987765
Q ss_pred CCCCChh-h-----HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCC
Q 008727 291 GVAPRTN-D-----YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 291 ~~~~~~~-~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~ 363 (556)
-..++.. + --.+....-..++.+.|.+.|..+.+..+. -...|-.+... -.+++..+|...+......+ ..
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 2333332 1 112233444567899999999999886433 23334444322 33578889999998887654 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCC
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTDMESYNVMVSFLCT------------SGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~~ 430 (556)
++..++.+...+.+...+..|.+-|..+.+. ...+|..+.-+|...|.+ .+..++|+++|.+..+..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555666788888888888877766543 222466655555555443 235678999999999876
Q ss_pred CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhhHH
Q 008727 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYT 509 (556)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~ 509 (556)
++ |...-|-+.-.++..|++.+|..+|.+..+.. .-...+|-.+.++|..+|++..|+++|+...+. .-.-+.....
T Consensus 643 pk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 PK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 55 77777888889999999999999999999875 346677889999999999999999999997765 4445778889
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHH
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILST 545 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 545 (556)
.|.+++.+.|.+.+|.+.+.......+.-+...++.
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999999999999888777655555553
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.2e-15 Score=143.05 Aligned_cols=483 Identities=12% Similarity=0.039 Sum_probs=262.7
Q ss_pred hhhccChhHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC---
Q 008727 58 PYLLTHHSLALGFFNWAS-QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--- 133 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 133 (556)
.+.+++...|+.+|..+. ..+...||+.. .+-..+.+.++.+.|...|+...+.+ |-++.++..|...-....
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchH
Confidence 345667888899888853 35566666633 23345566777777777777666654 223333333322222222
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
.+..++..+...-.... -++.+.+.|...|.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 23344444444333222 25566666666666666666666666665553211 1122344555666666666666666
Q ss_pred HHHHHhccCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 008727 212 LDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMG----SVFEREVVLK 285 (556)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~----~~~~a~~~~~ 285 (556)
|.+..+. .+++ ...+.-+.+.|.+.|+++.+...|+.+.+. .| +..+...|...|...+ ..+.|..++.
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 6655543 2222 222344566666666666666666666554 22 2334444444444433 2233333333
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHc-
Q 008727 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV----SGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEK- 359 (556)
Q Consensus 286 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~- 359 (556)
+..+.- ..|...|..+...+... +...+...+..+. ..+..+.+.+.|.+-.. +..|+++.|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 333221 11222333333332222 2222233332222 22222333333333322 4445555555555444332
Q ss_pred --CCCCCHH------HHHHHHHHHHhc----------------------------------CChHHHHHHHHHHHhCCCC
Q 008727 360 --GRVPTLS------TLSNLSKNLCKR----------------------------------NKSDELVEVYKVLSANDYF 397 (556)
Q Consensus 360 --~~~~~~~------~~~~ll~~~~~~----------------------------------g~~~~a~~~~~~~~~~~~~ 397 (556)
...++.. +--.+...+-.. ++..+|...++.....+-.
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 1111110 011111122222 4455555555555543222
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhh------------cCChhhHHHHHHHHHHc
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCR------------EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~ 464 (556)
++..++.+...+.+...+..|.+-|......- ..+|..+...|.+.|.. .+..++|+++|.+..+.
T Consensus 563 -np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 563 -NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred -CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 45555556666666666666666555444321 22566666666665542 23478899999999887
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhC-CCcccHHHH
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH-DVMLARSIL 543 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~ 543 (556)
. +.|...-|.+.-+++..|++.+|..+|....+... -+..+|-.+..+|...|++..|+++|+...+. ....+..++
T Consensus 642 d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 642 D-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred C-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 5 67888889999999999999999999999998754 25567888999999999999999999987654 456677777
Q ss_pred HHHHHHHhhhh
Q 008727 544 STFMISLCRRV 554 (556)
Q Consensus 544 ~~l~~~~~~~~ 554 (556)
..|-.++.+.|
T Consensus 720 ~~Lara~y~~~ 730 (1018)
T KOG2002|consen 720 HYLARAWYEAG 730 (1018)
T ss_pred HHHHHHHHHhh
Confidence 77777776655
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.4e-14 Score=128.97 Aligned_cols=440 Identities=14% Similarity=0.167 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH--cCCChHHH-HHHHHHHHhCCCCCChHhHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI--QGKNTQKA-FSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+=|.+++. ...|.+..+.-+++.|.+.|++.+..+-..|++.-+ ...+.--| .+.|-.|...|-. +..+|.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK--- 191 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc---
Confidence 344455544 467888999999999999999999888888776543 33333322 2334444444322 333442
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.|.+.+ -+|+... -+..||.++|.++|+--..+.|.+++++.....| .. +..++|.+|.+-.-.
T Consensus 192 -----~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv-~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 192 -----SGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KV-YREAFNGLIGASSYS-- 255 (625)
T ss_pred -----cccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-ee-eHHhhhhhhhHHHhh--
Confidence 233322 2233222 2557888888888888888888888888776522 22 245667666554322
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE----REVVLKKKRKLGVAPRTNDYREFILGLIVERRICE-AK 316 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~ 316 (556)
.-.+++.+|....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 226788888888888999999999999888887765 46677888888999998888888888888877654 33
Q ss_pred HHHHHHH----cCCCCC----CHHHHHHHHHHHh-cCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCC
Q 008727 317 ELGEVIV----SGKFTI----DDDVLNALIGSVS-SIDPRSAIVFFNFMIEKG----RVPT---LSTLSNLSKNLCKRNK 380 (556)
Q Consensus 317 ~~~~~~~----~~~~~~----~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~g~ 380 (556)
.++.++. ...+.| +...+...+..+. -.|.+.|..+..-+.... +.|+ ..-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 222222 2233444444433 346666666554443221 1222 2345666777788888
Q ss_pred hHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC-Ch--------
Q 008727 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LL-------- 451 (556)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~-------- 451 (556)
.+.....|+.|.-.-+.|+..+...++++..-.+.++-.-++|.+++..|...+...-.-++..+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 888888888888777778888888888888888888888888888888775544444444444444433 11
Q ss_pred ------------hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhHH---HHHHHH
Q 008727 452 ------------RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYT---SLLEGL 515 (556)
Q Consensus 452 ------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~---~l~~~~ 515 (556)
+.....-.++.+ ........+.+.-.+.+.|+.++|.++|....+.+ -.|-....+ .++..-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 011111122333 34556677888888999999999999999996654 334444445 556667
Q ss_pred HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHH
Q 008727 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 549 (556)
.+.++..+|..+++-|...+...-..+-..+++.
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~ 605 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLPICEGLAQRIMED 605 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHh
Confidence 7889999999999999887765444344444443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.3e-14 Score=146.36 Aligned_cols=424 Identities=11% Similarity=0.035 Sum_probs=272.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+.+-...+-...+.|++..|.+.|++..+.. +.+ ..++ .++..+...|+.++|+..+++..... .........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 33333344445568888888888888887765 222 2333 77777777788888888888876211 11233334445
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|. ...+..++..+...++
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~-~~~~l~layL~~~~~~ 184 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPT-VQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---Ccc-hHHHHHHHHHHHhcch
Confidence 6777778888888888888776532 3455556667777778888888877777765 222 2223334444434555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+- |+-.+-..... . +.+.+.+..+.
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~--l---~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ--L---ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH--H---HHHHHHHHHhh
Confidence 555777777777763 114555666677777777777776655441 22111111000 0 00111111110
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008727 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPT-----LSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 395 (556)
....... ...-+ .-.+.|+.-++.+... +..|. .....-.+-++.+.|++.++++.|+.+...+
T Consensus 253 a~~~~~~-~~~r~---------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 253 AVLPTRS-ETERF---------DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ccccccc-chhhH---------HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 0000000 00000 0135566666666552 22232 1222344567889999999999999999888
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC----
Q 008727 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-----LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC---- 466 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 466 (556)
.+....+-.++..+|...+++++|..+++.+.... ..++......|..+|...+++++|..+++.+.+..-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 66455688899999999999999999999987643 122444467899999999999999999999997310
Q ss_pred -------CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 467 -------SGN---LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 467 -------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.|| ...+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.....++
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 122 2334556778899999999999999998763 33788888889999999999999999987766655
Q ss_pred c
Q 008727 537 M 537 (556)
Q Consensus 537 ~ 537 (556)
.
T Consensus 482 ~ 482 (822)
T PRK14574 482 R 482 (822)
T ss_pred c
Confidence 4
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=9.5e-16 Score=137.23 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=132.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV--ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (556)
+.++|+++.|+++++-+.+..-+.-...-+.|...+.- -.++..|.+.-+..+...........|.--.++.+|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 44556666666666555444322222222222222221 2234444444443332211111111111112344556666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
|.+.+++.+..+.......|++=+ .+-+.|++++|++.|-++...-. .+..+...+...|....+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 666666665544333333333322 24455666666666555443211 1444555555555555666666666555443
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 508 (556)
. +..|+.....|...|-+.|+-..|.+.+-+--+. ++.+..+...|..-|....-+++++..|++.. -++|+..-|
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kw 662 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKW 662 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHH
Confidence 3 2234555566666666666666665554433322 34555666666666666666666666666554 345666666
Q ss_pred HHHHHHH-HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 008727 509 TSLLEGL-CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC 551 (556)
Q Consensus 509 ~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 551 (556)
..++..| .+.|++++|+++++...++=+ -+...+.-|++.+.
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~ 705 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhc
Confidence 6665544 455666666666665544332 23444444444443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.6e-14 Score=127.28 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=175.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.+..+|..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-... .+++.+|......||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 346678888898888888888898888888887778888888888876543222 6788888888888899999999
Q ss_pred HHHHHhcCCHhH----HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH-HHHHHHHHHhc------cCCCCCchhhH
Q 008727 161 LAVLASDGYIDN----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ-VLSMLDEVRKR------ENSMINGSVIA 229 (556)
Q Consensus 161 i~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~------~~~~~~~~~~~ 229 (556)
+++.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... ....|.+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999888887665 46677788888999999999888888888877644 44444444321 13345566666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRE----CKPDF---IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (556)
...+..|.+..+.+.|.++-.-..... +.|+. .-|..+....++....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777777778888888877765554321 23332 23555666777777777778888888777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 303 ILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
+++....|.++-.-+++..++..|.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhh
Confidence 7777777777777777666655443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.1e-11 Score=119.20 Aligned_cols=471 Identities=13% Similarity=0.053 Sum_probs=326.0
Q ss_pred hhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHH
Q 008727 58 PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 137 (556)
.+++++...|.+++..+.++.+ .....|..|..+|-..|+.+++...+-.+.... +-|...|..+.....+.|+++.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3556889999999999988764 567789999999999999999988766555544 5677999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHH----HHHHHhhCcHHHHHHHHH
Q 008727 138 AFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVF----IWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~ 213 (556)
|.-+|.+.....++ +...+---...|-+.|+...|.+-|.++.+...+.|..-+..+ +..+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987544 6666666788899999999999999999987643343333333 444566677799999999
Q ss_pred HHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHH----------------------HH----HH
Q 008727 214 EVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA----------------------YR----IV 267 (556)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----------------------~~----~l 267 (556)
..... +....+...++.++..|.+...++.|......+..+..++|..- |. -+
T Consensus 305 ~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 305 GALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 88875 44455566778899999999999999999888876222222211 11 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cC
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLG--VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SI 344 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 344 (556)
.-++.+....+....+........ +.-+...|..+..++...|++..|..++..+......-+..+|-.+-.++. .+
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223344444444455555555555 333455788888899999999999999999998877777777777777766 58
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------CCCCccHhhHHHHHHHHHhcCCH
Q 008727 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA--------NDYFTDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~ 416 (556)
..+.|++.|+..+.... .+...-..|-..+.+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 89999999999887642 2344445566778899999999999988653 22334444455555667778888
Q ss_pred HHHHHHHHHHHHCCC-----CC-----------------CHhHHHHHHHHHhhcCChhhHHHHHHHH------HHcCCCC
Q 008727 417 REAYGVIQEMKRKGL-----DP-----------------DVSFYNSLMEACCREDLLRPAKKLWDQM------FASGCSG 468 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~-----~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~ 468 (556)
++=+.+...|...+. -| ...+...++.+-.+.++.....+-...- ...|+..
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 776655555543211 01 1122223333333333322222111111 1112222
Q ss_pred CH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 469 NL--KTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 469 ~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
+. ..+.-++.++++.+++++|+.+...+..... .-+.. .-...+.+.+..+++..|.+.++.|+..
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 3456677889999999999999999987531 11222 2244566778899999999999999776
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.2e-13 Score=119.47 Aligned_cols=463 Identities=10% Similarity=0.047 Sum_probs=320.2
Q ss_pred CCHHHHHHHhhhhhccC-hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----Hh
Q 008727 47 LSPSLVARVINPYLLTH-HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS----SV 121 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~-~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 121 (556)
++-+++..+.+.+..++ ..+|+..+.-..+..-|+.....--.+...+.+.+++.+|+++++-....-...+. ..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 67777777777776554 66899888877665555444444445667888999999999999877765322233 34
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh--------HH
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG--------FG 193 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--------~~ 193 (556)
.+.+.-.+.+.|+++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|..|+.-...||..- -.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 555566788999999999999998876 45666555566666678999999999999976543333221 12
Q ss_pred HHHHHHHhh---------C--cHHHHHHHHHHHHhccCCCCCchh---------------------hHHHHHHHHhccCC
Q 008727 194 VFIWKFCEN---------A--KLGQVLSMLDEVRKRENSMINGSV---------------------IAVLIIHGFCKGKR 241 (556)
Q Consensus 194 ~li~~~~~~---------g--~~~~a~~~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~~~~~ 241 (556)
.|+.-..+. + +.++++-.--.+.. .+..++.. .-..-..-+.++|+
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 233222222 1 11222211111111 11111100 00012344778999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIV--AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
++.|.+++.-+.++.-+.-+..-+.| +..+..-.++..|.++-+...... ..+......--......|++++|.+.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999988776433222222322 222222346677776665544321 111111111112344679999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
.+.+..........||.-+.+-..|++++|++.|-++..- +..+..++..+.+.|-...+...|++++.+.... ++.|
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 9999988777888899999888899999999999877432 2235667777888899999999999999887665 3448
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
+.+.+-+...|-+.|+-..|.+.+-+--+- +..+..+...|...|....-+++++.+|++..- +.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 889999999999999999999887665443 445788889999999999999999999998765 68999999998866
Q ss_pred HH-ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 480 FS-EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 480 ~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
|. +.|++.+|.++++....+ ++-|..++.-|++.+...|.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 54 689999999999998765 77788999999998888775
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=9.8e-11 Score=110.37 Aligned_cols=428 Identities=11% Similarity=0.043 Sum_probs=223.9
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHH----HhCCCCCChHhHHHHHHHHHhcC
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV----KFNCEDIGPEICNSLLAVLASDG 168 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g 168 (556)
+|++..-++.|..+++...+. ++.+...|..-...=-..|+.+...++.+.- ...|+..+...|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444455555555554442 3444555544444444455555555554432 23455555555555555555555
Q ss_pred CHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 169 YIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
..-.+..+....+.-|+.-. ..||..-.+.|.+.+.++-|..+|....+. .|....+|...+..--..|..++..
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 55555555555554444321 235555555566666666666666666544 5555556655555555566666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (556)
.+|++.... ++-....|-.....+-..|++..|..++.+..+.... +...+...+.....+..++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 666666554 1223334444444555566666666666666554332 4445555566666666666666666665542
Q ss_pred CCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 327 ~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
.++..+|.--+.. ...++.++|++++++.++. -|+ ...|..+...+-..++++.|.+.|..-.+. ++-.+..|-
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 2333343333322 2235556666666555443 222 333444444555555555555555443332 112333555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----C---------------
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----G--------------- 465 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--------------- 465 (556)
.+...--+.|.+-.|..+|++..-++.+ +...|-..|++-.+.|+.+.|..+..+..+. |
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 5555555556666666666666555544 5556666666666666666666555544432 0
Q ss_pred ----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 466 ----------CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 466 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.-|++..-.+...|....++++|.+.|.+....+.. +..+|.-+...+.+.|.-++-.+++++...
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1223444444445555555566666666666544221 344555555555666655555555555543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=3.1e-10 Score=107.08 Aligned_cols=409 Identities=8% Similarity=-0.039 Sum_probs=304.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----hHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-
Q 008727 79 NFTHSPLSYHSILKSLSLSRQINAIDSVLKQ----VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG- 153 (556)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 153 (556)
.++-++..|.+-...=-+.|+.+.+.+++++ +...|+..+...|..=...|-..|..-.+..+...+...|++-.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4456777777666666678999999888765 45578889999999999999999999999999999988776532
Q ss_pred -hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 154 -PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 154 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
..+|+.-.+.|.+.+.++-|..+|....+-- +-+...|..+...--..|..+....+|++.... .|.....|-..
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ 590 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMY 590 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHH
Confidence 2488899999999999999999999888753 335567777666666678888888999888876 66667777777
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI 312 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 312 (556)
...+-..|++..|..++....+.... +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+...--.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 77778889999999998888776433 5667888888888888999999998887664 44555555545545556788
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHH-HHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 313 CEAKELGEVIVSGKFTIDDDVLNALI-GSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
++|.++++..++.-+ +-.-+-.++ ..+. .++.+.|.+.|..-.+. ++...-.|..+.+.--+.|++-.|..+++.
T Consensus 668 eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 888888888777532 222222222 2222 35677777666544332 223345566666666777888888888888
Q ss_pred HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------------CCCCHhHHHHH
Q 008727 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-----------------------------LDPDVSFYNSL 441 (556)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------------~~p~~~~~~~l 441 (556)
..-.++. +...|-..|++-.+.|+.+.|..+..+..+.- +.-|+.....+
T Consensus 745 arlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 8877766 77788888888888888888887777655431 12244555666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...|-....+++|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.++++.....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 666777778999999999999875 556788999999999999999999999888765
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=1.2e-11 Score=120.89 Aligned_cols=383 Identities=12% Similarity=0.082 Sum_probs=229.1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..+...|+.+.|..++.++++.. +.....|..|...|-+.|+.+++...+-...-..++ |...|-.+-....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 33445699999999999999876 678889999999999999999999888777665544 7789999999999999999
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhh-----HHHHHHHHhccCCHHHHH
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-----AVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~ 246 (556)
+|.-.|.+.++... ++...+---+..|-+.|+...|...|.++.+. .|+...- -..+++.|...++-+.|.
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999988753 33333334455788889999999999999876 3322111 123567777788878888
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 008727 247 KVLDELRIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV-- 323 (556)
Q Consensus 247 ~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-- 323 (556)
+.++..... +-..+...++.++..+.+...++.+......+......+|..-+..--. + ..-+....
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~-----~~~~~~~~~~ 370 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----R-----REEPNALCEV 370 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----c-----cccccccccC
Confidence 888877653 2234556788888888888889998888877766433333322210000 0 00000000
Q ss_pred cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
..+..++..++..++....-...+....+...+.+.. +.-+...|..+..+|...|++.+|..+|..+......-+..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 0112222222233333222222222222222233333 22234555556666666666666666666666554444555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH--------cCCCCCHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA--------SGCSGNLKTY 473 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 473 (556)
.|-.+.++|...|..++|.+.++........ +...-..|-..+-+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 6666666666666666666666666554221 223334444555566666666666665431 1223333333
Q ss_pred HHHHHHHHccCCHHHHHH
Q 008727 474 NILISKFSEVGEIEGALR 491 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~ 491 (556)
-...+.+.+.|+.++=..
T Consensus 530 ~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 334444555555554333
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.2e-10 Score=102.96 Aligned_cols=454 Identities=10% Similarity=-0.003 Sum_probs=327.3
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 144 (556)
..|-+.|..+.... ..+...|-..+..=.+.+.+..|..+++.....- |--...|---+-+=-..|++..|.++|+.
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35666666654322 3455677777888888999999999999988753 22233444445555567999999999999
Q ss_pred HHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC
Q 008727 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224 (556)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 224 (556)
..+. .|+..+|++.|+.=.+.+..+.|..+|++..-. .|+..+|......--+.|....+..+|+...+.-|....
T Consensus 167 W~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 167 WMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8875 789999999999999999999999999998864 589999998888888899999999999988876454444
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH--------HHHHhcCCCCC
Q 008727 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVL--------KKKRKLGVAPR 295 (556)
Q Consensus 225 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~--------~~~~~~~~~~~ 295 (556)
....+++....=.++..++.|.-+|.-..+.-.+-. ...|..+...=-+.|+.....+.. +.+.+. -..|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCC
Confidence 455666666666677888889888888776521111 334555544444556554443332 222222 1224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHH---------HHhcCChhHHHHHHHHHHHcCCCCCH
Q 008727 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD-VLNALIG---------SVSSIDPRSAIVFFNFMIEKGRVPTL 365 (556)
Q Consensus 296 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (556)
-.++-..++..-..|+.+...++++..+..-++.... .|...+- -+...|.+.+.++++..++ -++...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 4466667777777899999999999999876554332 2322221 1234689999999999888 344456
Q ss_pred HHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 366 STLSNLSKNL----CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 366 ~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
.||.-+=-.| .+..++..|.+++..... .-|-..++...|..-.+.++++.+..++++..+.++. |..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHH
Confidence 6776654444 467889999999988764 3467788999999999999999999999999998765 78888888
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----
Q 008727 442 MEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC---- 516 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---- 516 (556)
...-...|+.+.|..+|+-+++.. +......|.+.|+-=...|.++.|..+++++++. .+...+|.+...-=.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 888888999999999999998742 2223455666666667899999999999999976 233445655543222
Q ss_pred -ccC-----------CHHHHHHHHHHhh
Q 008727 517 -QET-----------NLQAAFEVFNKSV 532 (556)
Q Consensus 517 -~~g-----------~~~~a~~~~~~m~ 532 (556)
+.| ....|..+|++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 4667888888763
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=4.9e-12 Score=122.89 Aligned_cols=219 Identities=13% Similarity=0.171 Sum_probs=161.5
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh
Q 008727 75 SQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154 (556)
Q Consensus 75 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 154 (556)
.+..|..|+.++|.++|..|+..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356788999999999999999999999998 9999998888889999999999999999987776 6688
Q ss_pred HhHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCC-----------------ccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 155 EICNSLLAVLASDGYIDN---ALKMFDEMSH----RGV-----------------EFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~-----------------~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
.+|..|..+|...|+... +.+.++.+.. .|+ -||..+ ++....-.|-++.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999998544 4443333322 221 122211 2222333455555544
Q ss_pred HHHHHHhc----------------------------cCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH
Q 008727 211 MLDEVRKR----------------------------ENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262 (556)
Q Consensus 211 ~~~~~~~~----------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 262 (556)
++..+... .....++..++.+++..-...|+.+.|..++.+|+++|+..+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 44222110 01123446677788888888999999999999999999888887
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 263 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
-|-.|+-+ .++...++.+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77776655 78888888899999999999999998887777766544
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=6.1e-12 Score=121.65 Aligned_cols=295 Identities=9% Similarity=-0.054 Sum_probs=141.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
..|+++.|.+.+.+..+.... ....+-....+..+.|+.+.|.+.|.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356666666666655544221 1222233344555556666666666665543211111122223445555666666666
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 008727 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEF---KLMGSVFEREVVLKK 286 (556)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 286 (556)
.++.+.+. .|.+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 175 ~l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 175 GVDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666655 4555555556666666666666666666666665433 222121 111111 111111111222222
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 008727 287 KRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366 (556)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (556)
+.+..... .+.+..
T Consensus 251 ~~~~~p~~------------------------------------------------------------------~~~~~~ 264 (409)
T TIGR00540 251 WWKNQPRH------------------------------------------------------------------RRHNIA 264 (409)
T ss_pred HHHHCCHH------------------------------------------------------------------HhCCHH
Confidence 22211000 011333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES-YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV--SFYNSLME 443 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~ 443 (556)
.+..+...+...|+.+.|.+++++..+..+...... ...........++.+.+.+.++...+.... |. ....++..
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~ 343 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHH
Confidence 344444455555555555555555555432211111 011111112234556666666665554221 22 34456666
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666667777777766643333235666666666667777777777777766654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=9.3e-12 Score=119.65 Aligned_cols=283 Identities=8% Similarity=-0.006 Sum_probs=157.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHh-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH--HHHHHHHhhCcHHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEI-CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG--VFIWKFCENAKLGQV 208 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a 208 (556)
.|+++.|.+.+....+... ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5777777766666544321 2222 222233446667777777777777654 23332222 234566667777777
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-------AYRIVAEEFKLMGSVFERE 281 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~ 281 (556)
...++.+.+. .|.+..+...+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777655 56666666777777777777777777777777665432111 1111121111122222222
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
++++.+.+. .
T Consensus 250 ~~w~~lp~~----------------------------------------------------------------------~ 259 (398)
T PRK10747 250 RWWKNQSRK----------------------------------------------------------------------T 259 (398)
T ss_pred HHHHhCCHH----------------------------------------------------------------------H
Confidence 222221110 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
+.+......+...+...|+.++|.+++++..+.. |+... .++.+....++.+++++..+...+.... |...+..+
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~l 334 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTL 334 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 1234444455555666666666666666665532 23211 1223333446667777777666665332 44556666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...|.+.+++++|.+.|+.+.+. .|+...|..+..++.+.|+.++|.+++++...
T Consensus 335 grl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777777777777777777663 56666666677777777777777777766543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=9.7e-12 Score=120.25 Aligned_cols=292 Identities=10% Similarity=-0.019 Sum_probs=171.6
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
..|+++.|.+.+....+. .|.+...+-.....+...|+.+.|.+.+.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 446666666666555443 22223333344455555566666666665554432111111222234445555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 360 (556)
.+.++.+.+.... +......+...+...|+++.+.+.+..+ .+.+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l----------------------------------~k~~ 217 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNM----------------------------------AKAG 217 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHH----------------------------------HHcC
Confidence 5555555554311 2223444444555555555555554444 4443
Q ss_pred CCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC---ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 361 RVPTLSTLSNLSKN---LCKRNKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 361 ~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
..+.......-..+ ....+..+...+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. ||
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence 32211111111111 12222222223344443333221 277889999999999999999999999999874 44
Q ss_pred HhH---HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 435 VSF---YNSLMEACCREDLLRPAKKLWDQMFASGCSGNL--KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 435 ~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
... ...........++.+.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+.
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 332 1222222334577888999998888752 3344 567789999999999999999999654445579999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhh
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.+...+.+.|+.++|.+++++...
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998643
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.5e-14 Score=132.78 Aligned_cols=219 Identities=15% Similarity=0.112 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
.++.+.|.+.++.+...+.. ++..+..++..+..+++++|.+++....+.. ++...+..++..+...++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444333222 2333444444444556666666665544432 45566677788888999999999999
Q ss_pred HHHHhCC-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 008727 389 KVLSAND-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 389 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (556)
+.+.... .+.+...|..+...+.+.|+.++|++.+++..+..+. |......++..+...|+.+++.++++...+.. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 9877533 3457778888899999999999999999999987433 57778889999999999999999998888764 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.|+..+..+..+|...|+.++|+..|++..... +.|......+..++...|+.++|.++..+..+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 667788899999999999999999999988752 33788888889999999999999999887644
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.7e-11 Score=117.94 Aligned_cols=291 Identities=12% Similarity=0.024 Sum_probs=188.4
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR--IVAEEFKLMGSVFE 279 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~ 279 (556)
.|+++.|++.+...... .......+........+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 56777776666654433 1111223333344446666777777777666554 33433222 22445566666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008727 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359 (556)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 359 (556)
|.+.++++.+.... +......+...|.+.|+++++.+++..+.+.....+. ....+-
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------------
Confidence 66666666554321 2334445555666666666666665555544322111 000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 360 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
...|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++++..+. .||....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 0122233333334455666667777665432 247778899999999999999999999999885 4444322
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 519 (556)
++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcC
Confidence 3344456699999999999998764 556777889999999999999999999999965 799999999999999999
Q ss_pred CHHHHHHHHHHhhh
Q 008727 520 NLQAAFEVFNKSVN 533 (556)
Q Consensus 520 ~~~~a~~~~~~m~~ 533 (556)
+.++|.+++++...
T Consensus 376 ~~~~A~~~~~~~l~ 389 (398)
T PRK10747 376 KPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998754
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.5e-14 Score=131.39 Aligned_cols=262 Identities=13% Similarity=0.070 Sum_probs=95.3
Q ss_pred HHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 196 IWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
...+...|++++|+++++..... ...+.+...|..+...+-..++++.|.+.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 33444445555555555332222 111233333344444444455555555555555544221 23334344443 4455
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
++++|.+++....+.. ++...+..++..+...++++++.++++.+...
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------------------------------ 139 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------------------------------ 139 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-------------------------------
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------------------------------
Confidence 5555555544433321 22233333444444444444444443333211
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 435 (556)
.....+...|..+...+.+.|+.++|.+.+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|.
T Consensus 140 ---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 140 ---PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp ---T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred ---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 112345666777777788888888888888888876654 57778888888888888888888888777653 3355
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+..+..+|...|+.++|...|++..+.. +.|+.....+.+++...|+.++|.++.++...
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 677788888888889999999988888764 55788888888888889999888888877643
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=7.7e-11 Score=101.78 Aligned_cols=289 Identities=11% Similarity=0.069 Sum_probs=152.7
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch--hhHHHHHHHHhccCCHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS--VIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A 245 (556)
.+.++|.++|-+|.+.+. -+..+.-+|-+.|-+.|..|.|+++.+.+..+ +..+... .+...|..-|...|-+|.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345555555555554321 12233334445555555555555555555544 1111111 1223466777788888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN----DYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++|..+.+.|. --......|+..|-...+|++|+++-+++.+.+-.+... -|..+...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888876532 134556678888888888888888888877765544332 233344444444555555555555
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh
Q 008727 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (556)
..+.++. .+..--.+.+.....|++..|.+.++.+.+.++.--..
T Consensus 206 Alqa~~~-----------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 206 ALQADKK-----------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred HHhhCcc-----------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 4443221 11112223344555666666666666666654443344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
+...+..+|.+.|+.++...++..+.+... +...-..+-..-....-.+.|..++.+-.+. .|+...+..++..-.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 555666666666666666666666665432 2222223333323333344444444333332 566666666665543
Q ss_pred c---cCCHHHHHHHHHHHHH
Q 008727 482 E---VGEIEGALRLFHNMLE 498 (556)
Q Consensus 482 ~---~g~~~~A~~~~~~m~~ 498 (556)
. .|...+-+.+++.|..
T Consensus 327 ~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccccchhhhHHHHHHHHH
Confidence 2 3345555555666654
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.7e-10 Score=100.01 Aligned_cols=379 Identities=12% Similarity=0.058 Sum_probs=243.1
Q ss_pred CCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCC--Cchhh
Q 008727 151 DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI--NGSVI 228 (556)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 228 (556)
..|...+-.....+.+.|..+.|++.|......- +-.-..|..|.... -+. +........ .+ .....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~~---l~~~~h~M~ 229 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVVG---LPSDMHWMK 229 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHhc---CcccchHHH
Confidence 3355555555666677788888888887776541 11222232222211 122 222222111 11 11111
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHH
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV--APRTNDYREFILGL 306 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~ 306 (556)
-..+..++-...+.+++..-.+.....|+.-+...-+....+.....++++|+.+|+++.+... .-|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1235556666667788888887777777654444444444455677888999999998887621 12445665555332
Q ss_pred HhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008727 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385 (556)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 385 (556)
-....+.--.+..-.+- ...+.+...+-+.|+ +++.++|...|+..++.+.. ....++.+..-|....+...|.
T Consensus 310 ~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 22222111111111111 122334444445555 46788999999988876532 4566777778899999999999
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
+-++...+..+. |-..|-.+.++|.-.+...=|+-+|++..+..+. |...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999999987765 8889999999999999999999999998886433 78899999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPDATTY--TSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
..+...+..|.+.|-+.++.++|...|++.++. |..-+.... --|..-+.+.+++++|..+....... .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 556788899999999999999999988887652 433221211 22344567888999988877766554 333
Q ss_pred HHHHHHHHHHH
Q 008727 540 RSILSTFMISL 550 (556)
Q Consensus 540 ~~~~~~l~~~~ 550 (556)
..--..|++.+
T Consensus 540 ~eeak~LlRei 550 (559)
T KOG1155|consen 540 CEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.1e-12 Score=119.04 Aligned_cols=288 Identities=10% Similarity=0.013 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--CKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
..+|+..|..+... .++...+...+..+|...+++++|.++|+.+++.. ..-+...|.+.+-.+-+. -++.
T Consensus 335 ~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 335 CREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 44555555554433 33334444555666666666666666666665431 111444555554433221 1111
Q ss_pred HHH-HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 283 VLK-KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
.+. .+... -.-.+.+|.++..+|.-+++.+.|.+.|+..++.++
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp---------------------------------- 452 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP---------------------------------- 452 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC----------------------------------
Confidence 111 11111 112334566666666666666665555555544311
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
-..++|+.+..-+.....+|.|...|+......+. +-..|-.+.-.|.+.++++.|+-.|+...+.+.. +.+....+
T Consensus 453 -~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~ 529 (638)
T KOG1126|consen 453 -RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHI 529 (638)
T ss_pred -ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhh
Confidence 13445555555556666777777777766654322 2334444556677778888888888777776544 56666677
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
...+.+.|+.++|+++++++...+ +.|+..--..+..+...++.++|+..++++++. .| +...|..+...|.+.|+
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHcc
Confidence 777777788888888888777654 344444444556667777888888888887754 33 34556666677778888
Q ss_pred HHHHHHHHHHhhhCCCcccH
Q 008727 521 LQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 521 ~~~a~~~~~~m~~~~~~~~~ 540 (556)
.+.|+.-|--+.+.+++...
T Consensus 607 ~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 607 TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chHHHHhhHHHhcCCCccch
Confidence 88888877777777776665
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.3e-10 Score=103.56 Aligned_cols=292 Identities=12% Similarity=0.114 Sum_probs=140.9
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++.+|+++..+-.+.+-. ....|.....+.-..||.+.+-.++.+..+..+ . +.....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-D-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-C-chHHHHHHHHHHHHhCCCchhHH
Confidence 36677777777666555433 223444445555566666666666666655411 1 11233444555566666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (556)
.-.+++.+.+.. +.........+|.+.|++.....++..+.+.|.--+...-. +
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-------- 227 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-------- 227 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H--------
Confidence 666666555322 44455566666666666666666666666655443322100 0
Q ss_pred CCCCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH
Q 008727 327 FTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (556)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (556)
...+|+.++.-.... +.+.-...++... ...+-++..-..++.-+..+|+.++|.++.++..+++..|+. .
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 011122222221111 1111111222211 112233444444555555556666666555555555444331 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
..-.+.+-++.+.-++..+.-.+.... ++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 111223344444444444443332111 234455555555555555566555554444 24555555555555555565
Q ss_pred HHHHHHHHHHHHH
Q 008727 486 IEGALRLFHNMLE 498 (556)
Q Consensus 486 ~~~A~~~~~~m~~ 498 (556)
+.+|.++.++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=9.3e-09 Score=93.71 Aligned_cols=441 Identities=10% Similarity=0.011 Sum_probs=315.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...|-...+-=..++++..|..+|+..+.-. ..+...|..-+..=.+++.+..|..+++.....-+. -...|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 44455555555566889999999999998865 566777888888888999999999999998775222 2346666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+=-..|++..|.++|++-.+. .|+...|.+.|+.-.+.+.++.|..+++...-. . |....|.-....=-++|+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---H-P~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---H-PKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---c-ccHHHHHHHHHHHHhcCcH
Confidence 667789999999999998775 799999999999999999999999999999754 3 4477777777777889999
Q ss_pred HHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-
Q 008727 243 EEAFKVLDELRIR-EC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKEL- 318 (556)
Q Consensus 243 ~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~- 318 (556)
..|..+|+...+. |- .-+...++++...=.+...++.|.-+|+-.+..-.+-. ...|..+...--+-|+.......
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999987654 10 11223344444434456678888888887776522211 22344444433344554443332
Q ss_pred -------HHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCH-H-----HHHHH---HHHHHhcCCh
Q 008727 319 -------GEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTL-S-----TLSNL---SKNLCKRNKS 381 (556)
Q Consensus 319 -------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~-----~~~~l---l~~~~~~g~~ 381 (556)
++.....++ .+-.+|--.+.... .|+.+...++|+.....-.+.+. . .|.-+ +-.-....+.
T Consensus 304 v~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444433 34455555555543 48999999999998865332221 1 12111 1112356889
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHH
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMV----SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 457 (556)
+.+.++|+...+. ++....|+.-+= ..-.++.++..|.+++...+ |.-|-..+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998873 222444554443 33456789999999999877 4578889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+++.++-+ +-|..+|.-....=...|+.+.|..+|+-+++.. +......|.+.|.-=...|.++.|..+++++++...
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999876 5678888888888888999999999999998763 222344566666666789999999999999987654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.7e-10 Score=102.36 Aligned_cols=318 Identities=11% Similarity=0.039 Sum_probs=233.2
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcC
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY--RIVAEEFKLMG 275 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~ 275 (556)
.+-+.|....|+..|...... .|-...+|..|.... -+.+.+..+.. |...|..-+ -.+..++....
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~li---t~~e~~~~l~~-----~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELI---TDIEILSILVV-----GLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhh---chHHHHHHHHh-----cCcccchHHHHHHHHHHHHHHH
Confidence 345668888899888888755 444444554443322 22222222211 111121111 12344566667
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHhcCChhHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI--DDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
+.+++.+-.......|..-+...-+....+.....++++|..+|+++.+..+-. |..+|+.++-.-.. ...+.++
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---~skLs~L 318 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---KSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---hHHHHHH
Confidence 888888888888888877666555555556777899999999999999885432 34455544432211 1112222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
-+-...-.+--+.|..++.+-|+-.++.++|...|+...+.++. ....|+.|.+-|...++...|++-++..++....
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-
Confidence 22221112233567778888899999999999999999998766 6779999999999999999999999999998655
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
|-..|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|++....|-. +...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 88999999999999999999999999999874 668999999999999999999999999999987644 6678999999
Q ss_pred HHHccCCHHHHHHHHHHhhh
Q 008727 514 GLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~ 533 (556)
.|-+.++.++|...+++.++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998765
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.3e-09 Score=95.82 Aligned_cols=285 Identities=16% Similarity=0.096 Sum_probs=207.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|++..|++...+-.+.+-.| ...|..-..+..+.|+.+.+-.++.+.-+..-.++..............|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766655332 3445555566667777777777777776654455555666666677777777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 319 GEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTL-------STLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
.+.+.+.++. .+.+......+ ...|++.....++..+.+.|.-.+. .++..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766554 33444444444 3457778888888888777765443 3566666666666666666667776
Q ss_pred HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 008727 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470 (556)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (556)
.... .+.++..-.+++.-+.+.|+.++|.++..+..+++.+|+.. ..-.+.+.++.+.-++..+.-.+.- +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 22366777888899999999999999999999998877622 2235567778777777777666542 4455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7888999999999999999999998874 589999999999999999999999999998753
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.2e-10 Score=98.08 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=176.6
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC--HHhHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLD--SSVYR 123 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~ 123 (556)
++...+ ..++.+....+++|++.|-.+.+.. +-+..+.-++.+.|.+.|..+.|+.+.+.+.++. .+.+ .....
T Consensus 35 lsr~Yv-~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYV-KGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHH-hHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 444444 5567777777889999998886543 2344555567778888999999999999887753 1111 22445
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh----hhHHHHHHHH
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST----IGFGVFIWKF 199 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~ 199 (556)
.|.+-|...|-++.|+.+|..+.+.+. --..+...|+..|-...++++|+++-+++.+.+.++.. .-|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 567778889999999999999876532 24567788899999999999999998888876644332 2344445555
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 279 (556)
....+.+.|..++....+. .|....+-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 191 LASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 5668888889888888866 5555666667788888899999999999998888544445667788888999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 008727 280 REVVLKKKRKLGVAP 294 (556)
Q Consensus 280 a~~~~~~~~~~~~~~ 294 (556)
....+..+.+....+
T Consensus 268 ~~~fL~~~~~~~~g~ 282 (389)
T COG2956 268 GLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHccCCc
Confidence 988888887764433
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.2e-11 Score=112.86 Aligned_cols=284 Identities=11% Similarity=-0.006 Sum_probs=160.6
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG--VEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
+..+|...|+.+...-.. +..+...+..+|...+++++|.++|+.+.+.. ..-+...|++.++.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345666666664443222 33455566666666666666666666665532 111445566555443221 11111
Q ss_pred H-HHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 212 L-DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 212 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+ +.+.. ..+..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~---~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLID---TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHh---hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 1 22221 24445566666666666666666666666666554 33 455666666666666666666666665433
Q ss_pred cCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 008727 290 LGVAPRTNDYREFI---LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366 (556)
Q Consensus 290 ~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (556)
.|+..|+++- ..|.+.++++.|.-.|+.+.+-++................++.++|+.++++....+.+- +.
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn-~l 558 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN-PL 558 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-ch
Confidence 3444555433 256666666666666666666655544444444444445566667777776666554332 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
.--.....+...+++++|...++++++.-+. +..++..+...|-+.|+.+.|+.-|.-+.+...++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 2222334455667777777777777765433 55567777777777777777777777766654443
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=6.3e-11 Score=115.41 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=163.3
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008727 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (556)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667888899999999999999999999999999 9999988777778889999999999999988775
Q ss_pred CccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh-hCCCCCCHHH
Q 008727 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR-IRECKPDFIA 263 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~ 263 (556)
.|...||..|..+|...||+.. |+...+. ...++..+...|.-..-..++..+. ..+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veqd----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQD----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHHH----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 6788999999999999999876 3333221 0113444555555555555554432 2233445433
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (556)
.+......|-++.+++++..+-.....- ++...++-+..... .
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~nt--p----------------------------- 187 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNT--P----------------------------- 187 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCc--h-----------------------------
Confidence 2223334455555555554332211000 00001211111111 1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 423 (556)
+++-........+ .|++.+|..++.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++
T Consensus 188 --vekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vl 259 (1088)
T KOG4318|consen 188 --VEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVL 259 (1088)
T ss_pred --HHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHH
Confidence 1111111111111 356666666666666666666666666666666666555555555443 55556666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 424 QEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 424 ~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
.-|.+.|+.|+..|+..-+-.+..+|
T Consensus 260 rgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 260 RGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHhcCCCCcchhHHHHHhhhcch
Confidence 66666666666666655555555433
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.6e-09 Score=96.08 Aligned_cols=416 Identities=11% Similarity=0.012 Sum_probs=215.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
....-|-+.|++++|++.+...++.. |+ +..|.....+|...|+|+++.+--.+..+..++ -+.++..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 34455677889999999999888864 66 777888888888899999888877777665332 334666667777788
Q ss_pred CCHhHHHHHHHHHHh-CCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 168 GYIDNALKMFDEMSH-RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 168 g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
|++++|+.=..-.-- .|.. +. ....++....+.--...+.+.+. ..+ ....|+.. .|..|...-..+
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~~k--~nr-~p~lPS~~----fi~syf~sF~~~--- 264 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEKLK--ENR-PPVLPSAT----FIASYFGSFHAD--- 264 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHhhc--ccC-CCCCCcHH----HHHHHHhhcccc---
Confidence 888877543222111 1111 11 11111111111111111111111 011 11112111 122221110000
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHhc-CCCCChh---------hHHHHHH--HHHhc
Q 008727 247 KVLDELRIRECKPDFIAYRIVAEEFK----L-MGSVFEREVVLKKKRKL-GVAPRTN---------DYREFIL--GLIVE 309 (556)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~----~-~~~~~~a~~~~~~~~~~-~~~~~~~---------~~~~ll~--~~~~~ 309 (556)
.......+.......+..++. . ...+.++.+.+.+-... -..++.. .-..++. -+.-.
T Consensus 265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000000000011111111110 0 01122222222211100 0000000 0001111 22345
Q ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
|+.-.+.+-|+.++...+.+... |--+-.. ....+.++....|.+..+.+.. ++.+|-.-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665443332 2222222 2345667777777777665432 3445555555556667778888877
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (556)
++..+..+. +...|-.+--+..+.+++++++..|++.+++- .-.+..|+.....+...++++.|.+.|+..++. .|
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 777776543 44455555555567778888888888877762 225667777788888888888888888877764 22
Q ss_pred C-------H--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 469 N-------L--KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 469 ~-------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+ + .+--.++..- -.+++..|.+++++.++...+ ....|..|...-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1 1112222221 237777888888888765433 34567777777778888888888888753
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=7.2e-08 Score=91.59 Aligned_cols=433 Identities=13% Similarity=0.066 Sum_probs=208.8
Q ss_pred HHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
++.+.++.+........+++.+.+.++.+-+++ +.....-.+...|+.++|.+....-...+ .-+...|..+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 345555555555555566666655553332222 32222223344566677766666655543 345556666666666
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 210 (556)
..+++++|++.|......+.. |..+|.-|--.-++.|+++..........+.. +-....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666544 66666666666666666666666665555542 1233455556666666677777777
Q ss_pred HHHHHHhccCCCCCchhhHHH------HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHH
Q 008727 211 MLDEVRKRENSMINGSVIAVL------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~------li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~ 283 (556)
++++..+... ..++...+.. -.....+.|..++|.+.+..-... ..|...+ .+-...+.+.+++++|..+
T Consensus 165 il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 165 ILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 7777766522 2222222211 123344566666666665544332 1122222 2233445566777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcC
Q 008727 284 LKKKRKLGVAPRTNDYREFIL-GLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSID-PRSAIVFFNFMIEKG 360 (556)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~ 360 (556)
+..++.. .||...|...+. ++.+-.+.-++. .+|....+. ++.....-..-+..+...+ .+..-+++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 7776664 455554444333 332222222222 333333322 1111111111111111111 222333445555555
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HhCC----------CCccHhhH--HHHHHHHHhcCCHHHHHHHHH
Q 008727 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVL----SAND----------YFTDMESY--NVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 361 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~li~~~~~~~~~~~a~~~~~ 424 (556)
+++-...+.++ |-.....+-..++...+ ...| -+|....| --+++.+-..|+++.|..+++
T Consensus 319 ~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 54322222222 22111111111111111 1110 02333333 334455556666666666666
Q ss_pred HHHHCCCCCCH-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 008727 425 EMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 425 ~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 500 (556)
....+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...=.--..-..+.++.++|.++.....+.|
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 66554 3332 233344455666666666666666666554 3444333334444455666666666666655554
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=2.6e-07 Score=87.91 Aligned_cols=432 Identities=15% Similarity=0.086 Sum_probs=281.9
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (556)
...++--..|.....+..+.|....+-..+ +-..+.+.|+.+.-.+...+++++|++-|......+ +-|...+.-+-
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDls 116 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLS 116 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344444456666667778889988887643 334577889888777888899999999999999987 66788888887
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CccChhhHHHHHH------HH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIW------KF 199 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~------~~ 199 (556)
-.-++.|+++..........+..+. ....|..+..++.-.|+...|..++++..+.. -.|+...|..... ..
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 7788899999988888888765332 55689999999999999999999999988754 3456655544332 34
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK-LMGSVF 278 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~ 278 (556)
.+.|..++|.+-+...... ..+....-..-...+.+.+++++|..++..+..+ .||...|...+..+. +.-+.-
T Consensus 196 ~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 4568888888777666543 2332233345667788999999999999999988 577777766555443 333333
Q ss_pred HHH-HHHHHHHhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC-hh----HH
Q 008727 279 ERE-VVLKKKRKLG---VAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID-PR----SA 349 (556)
Q Consensus 279 ~a~-~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~----~a 349 (556)
++. .+|....+.- -.|-....+ ......-.+...+++....+.|+++ ++..+...+..-. .. -+
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHH
Confidence 333 5555544431 111111111 1111122233444555666666543 2333333332211 00 01
Q ss_pred HHHHHHHHHcC----------CCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 008727 350 IVFFNFMIEKG----------RVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 350 ~~~~~~~~~~~----------~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 417 (556)
..+...+...| -+|+... +-.++..+-+.|+++.|...++....+-+. -+..|..=.+.+...|+++
T Consensus 344 t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 344 TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChH
Confidence 11111111111 1445443 345677888999999999999999886322 2335555568888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH--------HHHHH--HHHHHccCCHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK--------TYNIL--ISKFSEVGEIE 487 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l--i~~~~~~g~~~ 487 (556)
+|..++++..+... ||...=..-.....+.++.++|.++.....+.|. +.. +|-.+ ..+|.+.|++.
T Consensus 423 eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g 499 (700)
T KOG1156|consen 423 EAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLG 499 (700)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHH
Confidence 99999999988753 4665555666777889999999999999988774 222 22222 34678888888
Q ss_pred HHHHHHHHHHH
Q 008727 488 GALRLFHNMLE 498 (556)
Q Consensus 488 ~A~~~~~~m~~ 498 (556)
.|++=|.....
T Consensus 500 ~ALKkfh~i~k 510 (700)
T KOG1156|consen 500 LALKKFHEIEK 510 (700)
T ss_pred HHHHHHhhHHH
Confidence 88776666543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.4e-09 Score=96.92 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=153.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|+.-.|..-|+..+.....++.- |-.+..+|....+.++.+..|+...+.++. ++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 44688999999999998887665542 555666799999999999999999998776 7778888888888889999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK- 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 499 (556)
.-|++.+..... +...|.-+.-+.-+.+.+++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999887433 5566766666777889999999999999876 5666889999999999999999999999999864
Q ss_pred ----CCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHhhhCCCcccH
Q 008727 500 ----GVAPDATTY--TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (556)
Q Consensus 500 ----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 540 (556)
++..+...+ ..++. +.-.+++.+|.+++++.++.++.-+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHH
Confidence 111222222 22222 22348999999999999998876443
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.1e-08 Score=88.06 Aligned_cols=167 Identities=10% Similarity=-0.043 Sum_probs=103.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (556)
+...+-+.|++++|...+..+.+.. .++...+..|...+.-.|.+.+|..+-.+..+ ++-.-..|+..--+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 3455668899999999998877754 56677777777777777888888887766533 34444555666667777
Q ss_pred HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 008727 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 249 (556)
-++-..+-+.+...- .--.+|.......-.+.+|++++.++... .+.-...-..+.-+|.+..-++-+.+++
T Consensus 137 Ek~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 777666665554321 11222333444455778888888888765 2221112223555777888888888887
Q ss_pred HHHhhCCCCCCH-HHHHHHHHHHH
Q 008727 250 DELRIRECKPDF-IAYRIVAEEFK 272 (556)
Q Consensus 250 ~~m~~~~~~p~~-~~~~~ll~~~~ 272 (556)
+--.+. .||+ ...|.......
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHh
Confidence 776654 3443 34444443333
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=7.2e-10 Score=99.29 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++....... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566677777888888888888888877654 445667777778888888888888888887766433 5567777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.+...|++++|.+.|++.......+ ....+..+...+...|++++|...++..... .|.+...+..+...+...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCC
Confidence 8888888888888888876642211 2334555566666777777777777777655 33444556666677777777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
+++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777776654 22344555555566666666666666655544
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.7e-08 Score=92.96 Aligned_cols=444 Identities=12% Similarity=0.026 Sum_probs=209.5
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH----HHhCC--
Q 008727 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE----VKFNC-- 149 (556)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~-- 149 (556)
+-.+...|+..-..+.+++.-.|++..|..++..-.-. ..|..+.......+.+..++++|..++.. .....
T Consensus 41 kV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 41 KVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred HHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 34444556666667888888888888888777654322 35777778888888999999999998882 21100
Q ss_pred -------CCCChH-----------hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 150 -------EDIGPE-----------ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 150 -------~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
..+|.. .+-.-...|....++++|...|.+....++. .-..+..++....-. ..+-..+
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~l 195 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFEL 195 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHH
Confidence 000100 0111112344445677777777776654322 112222222211100 0011111
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHH-hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 212 LDEVRKRENSMINGSVIAVLIIHGF-CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
|+.+.-. .....+......+.... ++..+ ++....-.+-.-.+..-+......-..-+...+++.+..++.+...+.
T Consensus 196 l~~l~~a-~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~ 273 (611)
T KOG1173|consen 196 LESLDLA-MLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK 273 (611)
T ss_pred HhcccHH-hhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence 1110000 00000000000000000 00000 000000000000112223333334444455566666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
. .+....+..-|.++...|+..+-..+-..+.+.-+......+...+-.+.-+...+|.+.|.+...-+.. -...|-.
T Consensus 274 d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~ 351 (611)
T KOG1173|consen 274 D-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLA 351 (611)
T ss_pred C-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHH
Confidence 1 2233344444556666666655555555555554443333344444444556666666666655432211 1234445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
+...|+-.|..|+|+..+....+.-..- -+..| +.--|.+.++.+.|.++|.+.....+ -|+..++-+.-.....+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYE 428 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHh
Confidence 5555666666666666665554421110 11112 22234455666666666665554422 24445555554445556
Q ss_pred ChhhHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 450 LLRPAKKLWDQMFAS----G--CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
.+.+|..+|+..... + ...-..+++.|..+|.+.+..++|+..+++.+... +-|..++.++.-.|...|+++.
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHH
Confidence 666666666655421 0 00123345556666666666666666666665542 2255566666666666666666
Q ss_pred HHHHHHHhh
Q 008727 524 AFEVFNKSV 532 (556)
Q Consensus 524 a~~~~~~m~ 532 (556)
|++.|.+.+
T Consensus 508 Aid~fhKaL 516 (611)
T KOG1173|consen 508 AIDHFHKAL 516 (611)
T ss_pred HHHHHHHHH
Confidence 666666553
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.2e-12 Score=82.72 Aligned_cols=49 Identities=45% Similarity=0.875 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.3e-12 Score=80.94 Aligned_cols=49 Identities=37% Similarity=0.785 Sum_probs=25.4
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=4.3e-09 Score=105.96 Aligned_cols=250 Identities=10% Similarity=-0.033 Sum_probs=142.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCc
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS---------DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 204 (556)
++++|...|++..+..+. +...|..+..++.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 456777777777665433 44555555544432 2346777777777776542 244556666666677777
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
+++|...|++..+. .|++...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 77777777777766 5666666666777777777777777777777665322 1122233344455567777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcC-CC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKG-RV 362 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~-~~ 362 (556)
++..+....-+...+..+..++...|+.++|...+..+....+. +....+.+...+. .| +.|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77665432112333455556666777777777777766444221 2222333333333 23 46666666554321 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSAND 395 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 395 (556)
+....+.. ..+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 22222222 234555666666655 6666653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.1e-09 Score=96.27 Aligned_cols=202 Identities=10% Similarity=-0.019 Sum_probs=150.0
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
.....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.+. .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34567778888888999999999999988776432 567888888899999999999999998887643 2445666777
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
..+...|++++|.+.++..... ...+.....+..+...+...|++++|.+.|++...... .+...+..+...+...|+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 7888889999999999888765 32333445566677888888899999888888876532 245667777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
+++|...+++..+. ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888887765 22344455555666667777777777665544
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=1.3e-06 Score=83.20 Aligned_cols=439 Identities=12% Similarity=0.096 Sum_probs=241.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC------CCCCHHhHHHHHHHHHcCCChH---HHHHHHHHHHhCCCCCC
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK------ITLDSSVYRFIIPSLIQGKNTQ---KAFSVFNEVKFNCEDIG 153 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~ 153 (556)
++..-+-.|..+...+++++|-+.+..+.... .+.+-..|.-+.+...+.-+.- ....++..+...-.+-=
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 34445666778888888888888887765431 2445566666666665543322 33444444443322112
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC----------------------cHHHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA----------------------KLGQVLSM 211 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~ 211 (556)
-..|++|.+.|.+.|.++.|.++|++....- .+..-|..+.++|+.-. +++-....
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 2489999999999999999999999977652 24444555555555321 22233333
Q ss_pred HHHHHhccCC---------CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcCC
Q 008727 212 LDEVRKRENS---------MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD------FIAYRIVAEEFKLMGS 276 (556)
Q Consensus 212 ~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~ 276 (556)
|+.+..+... .|.+...|.. +.-...|+..+-...|.+..+. +.|. ...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 4444332111 1222222221 1122345666667777776543 2221 2357777788888899
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-----------CCCHHH------HHH
Q 008727 277 VFEREVVLKKKRKLGVAPR---TNDYREFILGLIVERRICEAKELGEVIVSGKF-----------TIDDDV------LNA 336 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~------~~~ 336 (556)
++.|..+|++..+...+-- ..+|......-.+..+++.|.++++....... ++.... |..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999988776543321 22344444455566777888887776653211 111222 333
Q ss_pred HHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh-hHHHHHHHHHh--
Q 008727 337 LIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-SYNVMVSFLCT-- 412 (556)
Q Consensus 337 l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~-- 412 (556)
.+.... -|-++....+++.+.+..+.. +.........+-...-++++.++|++-...-..|++. .|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 333322 356777777777777766542 2222222223344555777777777655543334443 56666555443
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHH
Q 008727 413 -SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA--CCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIE 487 (556)
Q Consensus 413 -~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 487 (556)
....+.|..+|++..+ |+.|...-+..|+-+ =-+.|-...|++++++.... +.+. ...||..|+--+..=-+.
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCc
Confidence 2367888888888888 565554322222222 12346677778888776543 2332 345666665444333334
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHh
Q 008727 488 GALRLFHNMLEKGVAPDATTYTSLLEG---LCQETNLQAAFEVFNKS 531 (556)
Q Consensus 488 ~A~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~m 531 (556)
....+|++.++. -||...-...++- =++.|..+.|..++.-.
T Consensus 640 ~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 640 RTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred ccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 445556655544 3444433332221 14556666666666544
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=1.7e-08 Score=98.21 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
++..+...|...|++++|.++++...++.+. .+..|..-.+.+-+.|++.+|.+.++........ |...-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3344556677778888888888777776543 4556777777777778888888877777776554 6666667777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLK------TY--NILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLC 516 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~ 516 (556)
+.|++++|.+++....+.+..|-.. .| .....+|.+.|++..|++-|....+. .+.-|..-|... |.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~ 350 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CL 350 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HH
Confidence 7788888887777777665433221 11 33455677777777777777776654 344455555532 55
Q ss_pred ccCCHHHHHHHHH
Q 008727 517 QETNLQAAFEVFN 529 (556)
Q Consensus 517 ~~g~~~~a~~~~~ 529 (556)
|.|-+..=+++++
T Consensus 351 RK~t~r~Y~~~L~ 363 (517)
T PF12569_consen 351 RKMTLRAYVDMLR 363 (517)
T ss_pred hhccHHHHHHHHH
Confidence 6665444444433
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=9.1e-07 Score=83.41 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+...+++++|.+....+...+ +-+...+..-+-++++.+.+++|+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ 68 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL 68 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH
Confidence 344444555555555555555543 34444455555555555555555533
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=5.4e-09 Score=105.28 Aligned_cols=250 Identities=12% Similarity=0.036 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh---------ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC---------KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
+++++|...|++..+. .|.....|..+..++. ..+++++|...+++..+.... +...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 4567888888888766 5665666655554433 234477888888877766322 55666666667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.|++++|...|++..+.... +...+..+...+...|++++|...++...+.++......
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~-------------------- 409 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG-------------------- 409 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH--------------------
Confidence 78888888888777765321 233455556666777777777777766665543321111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008727 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 433 (556)
..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++... .|
T Consensus 410 ---------------~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 410 ---------------ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred ---------------HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 1122223345556666666655544322113334555555566666666666666665443 22
Q ss_pred C-HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 D-VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+ ....+.+...|...| ++|...++.+.+. ...+....+ +-..|+-.|+.+.+... +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2 223333444445444 3555555554432 111211112 23334445555555444 555544
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.1e-08 Score=91.12 Aligned_cols=284 Identities=14% Similarity=0.043 Sum_probs=169.7
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 189 TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
......-.+.+...+++.+..++++.+.+. .|.....+..-|..+.+.|+..+-..+=..+.+.- +-...+|-++.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 333444444455555555555555555544 23333333333445555555555555545554441 11334555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhH
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRS 348 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (556)
--|...|+.++|.+.|.+........ ...|....++|.-.|.-++|...+..+-+.-+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-------------------- 378 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-------------------- 378 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC--------------------
Confidence 55555566666666665543321111 114445555666666666665554433221000
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
...| ..| +.--|.+.++...|.++|.+.....+. |+.+.+-+.......+.+.+|..+|+....
T Consensus 379 -----------~hlP--~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 379 -----------CHLP--SLY--LGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred -----------Ccch--HHH--HHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 0111 111 122366778888888888877765544 677777777777777888888888887652
Q ss_pred C--CC---C-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 429 K--GL---D-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 429 ~--~~---~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
. .+ . --..+++.|.++|.+.+.+++|+..+++..... +.|..++.++.-.|...|+++.|.+.|.+.+ .+.
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~ 519 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALK 519 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcC
Confidence 1 01 1 134567888888888888888888888888764 6778888888888888888888888888887 667
Q ss_pred CCHhhHHHHHHHHH
Q 008727 503 PDATTYTSLLEGLC 516 (556)
Q Consensus 503 p~~~~~~~l~~~~~ 516 (556)
||..+-..++..+.
T Consensus 520 p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 520 PDNIFISELLKLAI 533 (611)
T ss_pred CccHHHHHHHHHHH
Confidence 88776666666443
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=3.1e-07 Score=80.90 Aligned_cols=425 Identities=13% Similarity=0.094 Sum_probs=264.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
+.-+...+++..|+.+++.-...+-.....+-..+...+.+.|++++|...+..+... -.++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5566678889999998887665543333344555666778999999999999998774 456888888888888888999
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
.+|..+-....+ +...-..++...-+.++-++...+.+.+... ..-..+|.......-.+.+|++++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999888765543 2233344555556678877777776666543 1222335555555567899999999
Q ss_pred HHhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHh--cCCHHHH--HH-------
Q 008727 251 ELRIRECKPDFIAYRIVAE-EFKLMGSVFEREVVLKKKRKLGVAPRTN-DYREFILGLIV--ERRICEA--KE------- 317 (556)
Q Consensus 251 ~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~--~~~~~~a--~~------- 317 (556)
+.... .|+-...|.-+. +|.+..-++-+.++++-.++. -||+. ..+.......+ .|+..+. .+
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 99876 455666665444 466777778888887766654 23322 22211111111 1222111 11
Q ss_pred ---HHHHHHcCCC------C------------CCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 008727 318 ---LGEVIVSGKF------T------------IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNL- 375 (556)
Q Consensus 318 ---~~~~~~~~~~------~------------~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~- 375 (556)
..+.+.+.+. + ....-.|.++-.+.+++..+|..+.+++.- ..|-......+..+-
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 1111222111 0 112235555566677888888888776532 223333333333221
Q ss_pred ----HhcCChHHHHHHHHHHHhCCCCccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC
Q 008727 376 ----CKRNKSDELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 376 ----~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 450 (556)
.....+.-|.+.|+..-+.+..-|.. ---++...+.-..++++++-++..+..--..-|...| .+..+++..|+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcC
Confidence 12223455667777666655443333 3445556666667888888888887765444344444 47788999999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTY-NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT-SLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~ 528 (556)
+.+|+++|-++..-.++ |..+| ..|..+|.+.+.++-|++++-++- -..+..+.- .+..-|.+.+.+=-|.+.|
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888765543 44454 556688899999999988776653 222333333 3345788899888888888
Q ss_pred HHhhhCCCccc
Q 008727 529 NKSVNHDVMLA 539 (556)
Q Consensus 529 ~~m~~~~~~~~ 539 (556)
+.+...++.|.
T Consensus 485 d~lE~lDP~pE 495 (557)
T KOG3785|consen 485 DELEILDPTPE 495 (557)
T ss_pred hHHHccCCCcc
Confidence 87777776553
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=3.2e-07 Score=89.08 Aligned_cols=436 Identities=14% Similarity=0.070 Sum_probs=226.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHhHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI-GPEICN 158 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 158 (556)
+.-++..|..+.-++.+.|++..+.+.|++....- --....|..+-..|...|.-..|+.+++.-......| ++..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 33466666666666777777777777777665532 2345566666666777777777777776654433222 333333
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHHHh--CCC--ccChhhHHHHHHHHHhh-----------CcHHHHHHHHHHHHhccCCC
Q 008727 159 SLLAVLASD-GYIDNALKMFDEMSH--RGV--EFSTIGFGVFIWKFCEN-----------AKLGQVLSMLDEVRKRENSM 222 (556)
Q Consensus 159 ~li~~~~~~-g~~~~a~~~~~~m~~--~~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 222 (556)
..-..|.+. +..+++++.-.+... .+. ......|..+.-+|... ....++.+.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 333334332 555555555444443 110 01112222222222211 2234556666666655 2
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHH
Q 008727 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-GVAPRTNDYRE 301 (556)
Q Consensus 223 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 301 (556)
+.|+.+-..+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |....... .
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 22222222244456666777777777777766655556667777766677777777777776655443 21110000 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcC
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIE--KGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g 379 (556)
-++.-..-++.+++......+..- |...-..-..++-....+....+.- ....-...++..+..-....+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 011111234444444332222110 0000000000111111111111110 011111223322222221111
Q ss_pred ChHHHHHHHHHHHhCCCCc--c------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 380 KSDELVEVYKVLSANDYFT--D------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
........ +......| + ...|......+.+.+..++|...+.+...... -....|......+...|..
T Consensus 625 ~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhh
Confidence 10000000 22111111 1 22566666777778888888877777665432 2456667777777788888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR--LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
++|.+.|......+ +-++.+.+++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+-+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence 88888888887753 3345677788888888888777777 88888876543 67788888888888888888888888
Q ss_pred HhhhCC
Q 008727 530 KSVNHD 535 (556)
Q Consensus 530 ~m~~~~ 535 (556)
...+..
T Consensus 779 aa~qLe 784 (799)
T KOG4162|consen 779 AALQLE 784 (799)
T ss_pred HHHhhc
Confidence 776543
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=2.1e-06 Score=81.86 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
..|-..++.+.+++++......|+..+.. .+......|...+......+-.+.+.++++.-.+. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45656666667777777777777766553 23334456666666666677777777777776654 44556666777
Q ss_pred HHhcCCHhHHHHHHHHHHhCC------CccChhhHHHHHHHHHhhCcHH---HHHHHHHHHHhccCCCCC-chhhHHHHH
Q 008727 164 LASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMIN-GSVIAVLII 233 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~-~~~~~~~li 233 (556)
+++.++.++|-+.+....... .+.+...|..+-+...+..+.- ....+++.+..+ .++ -...|..|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHH
Confidence 777777777777776654322 1223334444443333332221 122233333222 111 123556677
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 008727 234 HGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~ 254 (556)
+.|.+.|.++.|.++|++...
T Consensus 256 dYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 777777777777777666544
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=9.8e-08 Score=92.54 Aligned_cols=425 Identities=12% Similarity=0.053 Sum_probs=254.4
Q ss_pred HhcCChhHHHHH----HHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 95 SLSRQINAIDSV----LKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 95 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
+...+.+++... +.++....+.-+...|..+.-++..+|+++.+.+.|++....-+. ..+.|+.+-..|...|.-
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSD 373 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccc
Confidence 344455554332 233333445568888888888999999999999999988664333 567889999999999998
Q ss_pred hHHHHHHHHHHhCCCccChh-hHHHHHHHHH-hhCcHHHHHHHHHHHHhccCCC--CCchhhHHHHHHHHhcc-------
Q 008727 171 DNALKMFDEMSHRGVEFSTI-GFGVFIWKFC-ENAKLGQVLSMLDEVRKRENSM--INGSVIAVLIIHGFCKG------- 239 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~------- 239 (556)
..|..+++.-......|+.. .+-..-..|. +.+..++++.+-.++....+.. .-....|..+.-+|...
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 88999888766544334333 3333333333 3366677766666665421111 11123333333333321
Q ss_pred ----CCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 008727 240 ----KRVEEAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314 (556)
Q Consensus 240 ----~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 314 (556)
....++++.+++..+.+ -.|++.-|-++ -|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+
T Consensus 454 seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 12345677777776653 34444444333 356678889999999998888777777888888888888899999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHH----HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008727 315 AKELGEVIVSGKFTIDDDVLNALIG----SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKV 390 (556)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 390 (556)
|..+.+.....-.. -++.+.. ...-++.+++++....+...-- .. ......++-....+....
T Consensus 532 Al~vvd~al~E~~~----N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we--------~~-~~~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 532 ALDVVDAALEEFGD----NHVLMDGKIHIELTFNDREEALDTCIHKLALWE--------AE-YGVQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHhhh----hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH--------hh-hhHhhhhhhhhhhhhhcc
Confidence 99888776653211 0111111 0113566666666655543100 00 001112222333333333
Q ss_pred HHhC--CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------HhHHHHHHHHHhhcCChhhHHHHHHH
Q 008727 391 LSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP--D------VSFYNSLMEACCREDLLRPAKKLWDQ 460 (556)
Q Consensus 391 ~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (556)
+.-. ...-.+.++..+..-... +...+..-.. +......| + ...|......+.+.+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3211 111122233333222221 1111111011 22222222 2 23566777888899999999988888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHH--HHHHhhhCCCc
Q 008727 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFE--VFNKSVNHDVM 537 (556)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~ 537 (556)
..+.. .-....|......+...|++++|.+.|...... .|+ ..+..++...+.+.|+..-|.. ++..+.+.++.
T Consensus 676 a~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 676 ASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 87753 455677877788899999999999999999855 454 5677888899999998877777 99999999976
Q ss_pred ccHH
Q 008727 538 LARS 541 (556)
Q Consensus 538 ~~~~ 541 (556)
....
T Consensus 753 n~ea 756 (799)
T KOG4162|consen 753 NHEA 756 (799)
T ss_pred CHHH
Confidence 4443
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=6.7e-08 Score=94.06 Aligned_cols=310 Identities=13% Similarity=0.083 Sum_probs=181.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
+.-.....+...|++++|++.++.-...- .............+.+.|+.++|..+|..+.+.+ |+...|-..+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 33344556677788888888887754442 2244566777777888888888888888887765 45555544443333
Q ss_pred -h-----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 201 -E-----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE-EAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 201 -~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
- ..+.+...++++++... .|.....-. +.-.+.....+. .+...+..+..+|+++ +|+.+-..|..
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d 155 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKD 155 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh---CccccchhH-hhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcC
Confidence 1 12455556666666554 222211111 111122211222 2333334444444321 23333333332
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHH--HHHH-hcCChhHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL--IGSV-SSIDPRSAI 350 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~-~~~~~~~a~ 350 (556)
.....-..+++....... ...+.+.... ....-+|+...|... -..+ ..|+.++|+
T Consensus 156 ~~K~~~i~~l~~~~~~~l---------------~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSL---------------ESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred hhHHHHHHHHHHHHHHhh---------------cccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 222222222222221110 0000000000 001122334344333 3334 368999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 351 VFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 351 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
+++++.+++. |+ +..|..-.+.+-..|++.+|.+.++.....+.. |-..-+-.+..+.+.|++++|.+++....+.
T Consensus 215 ~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 215 EYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999998875 44 677777888899999999999999999988765 7777777888889999999999999998887
Q ss_pred CCCCCHhH--------HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 430 GLDPDVSF--------YNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 430 ~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+..|-... ..-...+|.+.|++..|++-|..+.+.
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 65443222 245567888999999999999888764
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-09 Score=94.19 Aligned_cols=164 Identities=9% Similarity=0.094 Sum_probs=116.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 450 (556)
+.+.+-..++.++|.++|+...+.... ++....++...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|...++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 445566667777777777777765443 5666666667777777888888888888888776 77778888878888888
Q ss_pred hhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
++-++.-|++....--.|+ ...|-.|.......|++.-|.+.|+-....+-. +...++.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888877777775533343 345666677777778888888888877765432 4566777766667788888888888
Q ss_pred HHhhhCCCc
Q 008727 529 NKSVNHDVM 537 (556)
Q Consensus 529 ~~m~~~~~~ 537 (556)
+......+.
T Consensus 453 ~~A~s~~P~ 461 (478)
T KOG1129|consen 453 NAAKSVMPD 461 (478)
T ss_pred HHhhhhCcc
Confidence 776655544
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.8e-06 Score=81.55 Aligned_cols=454 Identities=11% Similarity=0.013 Sum_probs=251.1
Q ss_pred HHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH--HHH
Q 008727 50 SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF--IIP 127 (556)
Q Consensus 50 ~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~ 127 (556)
.++..+-.....+.+++|.+..+.+.... +.+...+..=+-++...+++++|..+.+. .+. ..+++. +=.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHH
Confidence 44444444444455777888777774433 45666677777788889999998855442 221 111111 234
Q ss_pred HHH--cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCc
Q 008727 128 SLI--QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAK 204 (556)
Q Consensus 128 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 204 (556)
+|| +.+..++|...++-..+ .+..+...-.+.+-+.|++++|.++|+.+.+.+..- +...-..++. .+.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAA 157 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHH
Confidence 444 78899999998883322 244477777788889999999999999998765321 1111111111 111
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-------------CCCCHHH-HHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-------------CKPDFIA-YRIVAEE 270 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------------~~p~~~~-~~~ll~~ 270 (556)
.-.+. +.+..... ..++...+......+...|++.+|+++++...+.+ ++-+..+ -..+.-+
T Consensus 158 ~l~~~-~~q~v~~v---~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQ-LLQSVPEV---PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHH-HHHhccCC---CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 11111 22222221 11122222334566778899999999988872211 1111111 1223445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH---HHHHHhcCCHHH--HHHHHHHHHcCCC----------CCCHHHHH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREF---ILGLIVERRICE--AKELGEVIVSGKF----------TIDDDVLN 335 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~--a~~~~~~~~~~~~----------~~~~~~~~ 335 (556)
+...|+.++|..++...++.... |....... +.+...-.++.. +...++....... .-.....|
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66788999999988888776432 22211111 112222111111 1111111111000 00111122
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 008727 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK--RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (556)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (556)
..+-.+..+..+.+.++...+. +..| ...+.+++..+.+ ......+.+++...-+....-...+.-.+++.....
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 2222222333333333332221 1222 2344444444332 224677777777777665444456677778888889
Q ss_pred CCHHHHHHHHH--------HHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCHHH----HHHHHHH
Q 008727 414 GRLREAYGVIQ--------EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS--GCSGNLKT----YNILISK 479 (556)
Q Consensus 414 ~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~li~~ 479 (556)
|+++.|++++. .+.+.+..|..+ ..+...+.+.++.+.|..++.+..+. .-.+.... +.-+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 555555555544 45666677777777788887777642 11122222 3333334
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
-.+.|+-++|..+++++.+. ..+|..+...++.+|++. +++.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 45679999999999999875 356888888899998876 678888776654
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.5e-08 Score=97.31 Aligned_cols=244 Identities=20% Similarity=0.192 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHH
Q 008727 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKL-----GV-APRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVL 334 (556)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (556)
.+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+.+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL----------- 268 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL----------- 268 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------
Confidence 34444666677777777777777665443 10 111111 1123334555555555555554332
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---C--CC-CccHh-hHHHHH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA---N--DY-FTDME-SYNVMV 407 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~--~~-~~~~~-~~~~li 407 (556)
.+++...-...+.-..+++.|..+|.+.|++++|...++...+ . +. .|.+. .++.+.
T Consensus 269 ----------------~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 269 ----------------TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred ----------------HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 2222222222222345667777889999999998888877543 1 11 12222 466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC--CC-CHHHH
Q 008727 408 SFLCTSGRLREAYGVIQEMKRK---GLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GC--SG-NLKTY 473 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~ 473 (556)
..|+..+++++|..+++...+. -+.++ ..+++.+...|...|++++|.++++.++.. +- .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 7888899999999999875442 12222 368999999999999999999999998753 11 12 24567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEK----GV-APD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+.|...|.+.+++.+|.++|.+...- |. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88999999999999999999886542 32 122 4568889999999999999999999875
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=2.4e-08 Score=95.90 Aligned_cols=248 Identities=16% Similarity=0.121 Sum_probs=172.4
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-----E-CKPDFIA-YRIVAEEFKLMGSVFEREVVLKKKRKL---G 291 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 291 (556)
.|....+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... .
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4444455566888899999999999988876543 2 1334433 334666788899999999999988664 1
Q ss_pred CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HH
Q 008727 292 VAPRT----NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-LS 366 (556)
Q Consensus 292 ~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 366 (556)
.-++. .+++.|..+|.+.|++++|...++. |++++.+.... ..|. ..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~---------------------------Al~I~~~~~~~-~~~~v~~ 326 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER---------------------------ALEIYEKLLGA-SHPEVAA 326 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH---------------------------HHHHHHHhhcc-ChHHHHH
Confidence 11222 2455666689999999999887654 44455541111 1122 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCcc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTD----MESYNVMVSFLCTSGRLREAYGVIQEMKRK----GL--DP 433 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~p 433 (556)
.++.+...|+..+++++|..+++...+ .-+.++ ..+++.|...|...|++++|.+++++.+.. +- .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 455566678888889988888876543 112222 347899999999999999999999987653 11 22
Q ss_pred C-HhHHHHHHHHHhhcCChhhHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 434 D-VSFYNSLMEACCREDLLRPAKKLWDQMFA----SG--CSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
. ...++.+...|.+.++..+|.++|.+... .| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 45678888899999999999999887653 22 12235679999999999999999999988876
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.3e-06 Score=77.14 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 008727 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI 338 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (556)
|+.....+...+...|+.++|+..|++.+.. .|+..+ .......+...|+.+....+...+....-..-..++-.+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 4444555555555555555555555544332 121111 1111112234455555444444443321111122222222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHH
Q 008727 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (556)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 418 (556)
..+...+++.|+.+-++.++.+.. +...+-.=...+...|+.++|.-.|+......+. +...|..++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHH
Confidence 334455666666666665544321 2222222234567788999999889888776443 77789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH-HHHhh-cCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 419 AYGVIQEMKRKGLDPDVSFYNSLM-EACCR-EDLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 419 a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
|.-.-...... +.-+..+.+.+. ..|.. ...-++|..+++...+. .|+ ....+.+...+...|..+++..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 88777665543 223555555553 33332 23357888888887764 454 45667777888889999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
... ..||....+.|...+...+.+++|.+.|....+.++.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 884 4788888899999999999999999999988888875
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=4.9e-09 Score=90.94 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=160.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHh
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR-EFILGLIV 308 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~ 308 (556)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+...|+.++.+-.+. -|...||. -..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 57888899999999999999888776 566778888888999999999999888876653 34444443 23334555
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
.++.+++.++++.+.+... .++.....+...|.-.++.+.|..+|
T Consensus 303 m~~~~~a~~lYk~vlk~~~-----------------------------------~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-----------------------------------INVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-----------------------------------ccceeeeeeeeccccCCChHHHHHHH
Confidence 5666666666666554422 23444444445566667777777777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (556)
+++.+.|+. ++..|+.+.-+|.-.+++|-++.-|++....--.|+ ...|-.+.......||+..|.+.|+-...++
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 777777776 777777777777777778877777777665433333 3456667777777788888888888777664
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.-+...+|.|.-.-.+.|++++|..+++...+.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 445667777777777888888888888877644
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=7.6e-07 Score=76.66 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=55.1
Q ss_pred HHHhcCCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 008727 305 GLIVERRICEAKELGEVIV-SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 383 (556)
.+.+.++++.|.+.+-.|. ......|+.+...+.-.-..+++.+..+-+.-+.+.+. -...||..++-.|||..-++.
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 3456677777777766664 23344566665554444445666666666666666643 456788888888888888888
Q ss_pred HHHHHHH
Q 008727 384 LVEVYKV 390 (556)
Q Consensus 384 a~~~~~~ 390 (556)
|-.++-+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 8777654
No 81
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=6.8e-06 Score=89.35 Aligned_cols=336 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC----CCc--hhhHHHHHHHHh
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM----ING--SVIAVLIIHGFC 237 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~--~~~~~~li~~~~ 237 (556)
....|+++.+...++.+.......+..........+...|+++++...+.......... ++. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666554221111122222333444556677777777776664321100 000 111122334445
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---C--hhhHHHHHHHHHh
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP---R--TNDYREFILGLIV 308 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~ll~~~~~ 308 (556)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++........ . ......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677777777777766542111111 233444445566777777777776665431110 0 1123334445666
Q ss_pred cCCHHHHHHHHHHHHcC----CCCC---CHHHHHHH-HHHHhcCChhHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSG----KFTI---DDDVLNAL-IGSVSSIDPRSAIVFFNFMIEKG--RVP--TLSTLSNLSKNLC 376 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~ 376 (556)
.|+++.|...+++.... +... ....+..+ ...+..|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777766554431 1110 01111111 11234566666666665554321 111 1222233344455
Q ss_pred hcCChHHHHHHHHHHHhCCCCc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFT-DMESY-----NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCR 447 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 447 (556)
..|+.+.|.+.++......... ....+ ...+..+...|+.+.|.+++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 6666666666666553311000 00000 01112233456666666665544321111010 112344455556
Q ss_pred cCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 448 EDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666665532 21111 233444555566666666666666666655
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=4.1e-07 Score=83.79 Aligned_cols=217 Identities=11% Similarity=-0.015 Sum_probs=148.9
Q ss_pred hhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 64 HSLALGFFNWASQQPNFTHS--PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
.+.++..+..+.......|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34566666666544333333 3557777778889999999999999999876 56788999999999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCC
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (556)
|+...+..+. +..+|..+..++...|++++|.+.|+...+.+ |+..........+...++.++|...|......
T Consensus 121 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--- 194 (296)
T PRK11189 121 FDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK--- 194 (296)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---
Confidence 9999887544 66788889999999999999999999988764 33322222222344567899999999765543
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh---CCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI---REC--KP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.+++...+ .+... ..|+...+ +.+..+.+ ..+ .| ....|..+...+.+.|++++|...|++..+..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222222 23332 34444433 24444332 111 11 23567778888888888888888888887654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2.1e-07 Score=77.26 Aligned_cols=197 Identities=8% Similarity=-0.055 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...+.-.|...|++..|.+-+++.++.. +.+..++..+...|-+.|+.+.|.+.|++.....+. +-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4445567788888888888888888876 556778888888888888888888888888876544 67788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCc-cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVE-FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 245 (556)
.|++++|...|++......- --..+|..+..+..+.|+.+.|.+.|++..+. .|........+.....+.|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888887764322 23356666776777888888888888888876 555555666677788888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
...++.....+. ++..+.-..|+.-...|+.+.+-+.=.++.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888777765 7777777777777777877777665555544
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3.1e-07 Score=76.29 Aligned_cols=200 Identities=9% Similarity=-0.108 Sum_probs=158.8
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 008727 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199 (556)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 199 (556)
.+...|.-.|.+.|+...|..-+++..+..+. +..+|..+...|-+.|..+.|.+.|+...+... -+..+.|..-..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 35566777899999999999999999988544 667899999999999999999999999887642 3566777778888
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 279 (556)
|..|++++|...|+..... +..+....+|..+.-+..+.|+.+.|...|++-.+.... ...+...+.....+.|++..
T Consensus 114 C~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 9999999999999999887 556666778888888888999999999999988876322 33456677778888899999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 280 REVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
|...++.....+. ++..+.-..|+.-...|+.+.+.+.-..+..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9988888887766 7777776677777777887777665444443
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=5.1e-07 Score=83.18 Aligned_cols=185 Identities=15% Similarity=0.033 Sum_probs=87.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.|+.++|...|++..+... .+...|..+...+...|+++.|...|+...+..+. +...|..+...+...|++++|.+.
T Consensus 77 ~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 77 LGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444444444321 23455555556666666666666666666654433 344555555566666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--- 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 499 (556)
++...+.. |+..........+...++.++|.+.+++..... .|+...+ . ......|+..++ +.++.+.+.
T Consensus 155 ~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 155 LLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCC
Confidence 66665542 222111111112233455666666665443221 2222111 1 122223333332 233333221
Q ss_pred CC--CC-CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 GV--AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.. .| ....|..+...+.+.|++++|+..|++.++.++
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 00 00 123455566666666666666666666665554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5.4e-07 Score=77.56 Aligned_cols=291 Identities=11% Similarity=0.057 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
++.+..+.+..++..|++++..-.++.. .+....+.|...|....++..|...++++... .|.-.....--...+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHH
Confidence 3444444444555555555554444321 13334444444555555555555555555433 2221111112234455
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE--FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 315 (556)
+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566666666666666542 122211111221 224455666666655543221 111222222233466777777
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CHH--------HHHHHHH-
Q 008727 316 KELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP-------------TLS--------TLSNLSK- 373 (556)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~ll~- 373 (556)
.+-|....+-+--.....||..+..|++++...|++...++.++|++. |.. .-+.++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 777766665544445566777777777777777777777776665431 111 1122222
Q ss_pred ------HHHhcCChHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 374 ------NLCKRNKSDELVEVYKVLSAN-DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 374 ------~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+.+.|+++.|.+.+..|.-. .-..|++|...+.-.- ..+++.+..+-++-+...++- ...||..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 244667777777777666432 2234566655543322 234455555555555555443 3567777777888
Q ss_pred hcCChhhHHHHHHH
Q 008727 447 REDLLRPAKKLWDQ 460 (556)
Q Consensus 447 ~~~~~~~a~~~~~~ 460 (556)
+..-++.|-.++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 87777777776654
No 87
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=3.9e-05 Score=71.99 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhC-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhhcCChhhHHHHH
Q 008727 381 SDELVEVYKVLSAN-DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLW 458 (556)
Q Consensus 381 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 458 (556)
.+...++++++... ...|+ -+|...+..--+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55566666666553 23333 367777887778888888999999988887776 6677788887776 46778888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.=.+. +.-++.--...++-+...++-..|..+|++....++.|| ...|..++.-=..-|+...+.++-+++..
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 876654 233344445667777888888889999999888766554 46788888887888998888888887643
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=1.2e-05 Score=76.97 Aligned_cols=197 Identities=9% Similarity=-0.035 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHH-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSS-VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
..|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|.+.+++..+..+. +...++. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3344444555556666666555555444321 12221 1222233455677888888888877665332 4444442 22
Q ss_pred HHHh----cCCHhHHHHHHHHHHhCCCccC-hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 163 VLAS----DGYIDNALKMFDEMSHRGVEFS-TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 163 ~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
.+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++.... .|.+...+..+...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~ 159 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHH
Confidence 2222 34444444444431 111222 223334445566777777777777777765 4555566666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 238 KGKRVEEAFKVLDELRIREC-KPDF--IAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
..|++++|...+++...... .|+. ..|..+...+...|++++|..++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777777777665421 1222 234456666667777777777777664
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.2e-05 Score=70.08 Aligned_cols=270 Identities=10% Similarity=0.086 Sum_probs=139.1
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
++-++.....+...+...|+.++|+..|++.....+. +......-.-.+.+.|+.+....+...+.... .-...-|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3445555666666666666666666666665443211 11122222222334555555555555444321 011122222
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (556)
-........+++.|+.+-+...+. .+.+...+..-...+...++.++|.-.|+...... +-+...|.-|+.+|...
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 222333445555555555555543 33333344333344445555666655555544331 12445555666666655
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHH---HHHHhcCChhHHHH
Q 008727 275 GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNAL---IGSVSSIDPRSAIV 351 (556)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~a~~ 351 (556)
|++.+|.-.-+...+. ++.+..+...+ +.......-++|.+
T Consensus 382 ~~~kEA~~~An~~~~~------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred chHHHHHHHHHHHHHH------------------------------------hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 6555554443332221 01111111111 11111123355555
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 352 FFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 352 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
++++-+.. .|+ ....+.+...+...|..+.++.+++..... .||....+.+.+.+...+.+.+|++.|......+
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55554432 233 344555667778888888888888876653 3688888888888888888888988888887764
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-05 Score=73.69 Aligned_cols=407 Identities=13% Similarity=0.066 Sum_probs=204.9
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHcC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD-SSVYRFIIPSLIQG 132 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 132 (556)
+....+..++...|+..|-.+..-.. +|...|..-..+++..|++.+|.+=-.+-++. .|+ ...|+....++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 33444556778899998887765442 48888888899999999999987755555544 344 56888888889999
Q ss_pred CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHH------HHHhC---CCccChhhHHHHHHHHHhh-
Q 008727 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD------EMSHR---GVEFSTIGFGVFIWKFCEN- 202 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~---~~~~~~~~~~~li~~~~~~- 202 (556)
|++++|+..|.+-.+.... +...++.|.+++.... ++.+.|. .+... ........|..++..+-+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999999998877543 6677888888772110 1111111 11000 0000111222222211110
Q ss_pred ---------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC--------HH----HHHHHHHHHhh-CCCCCC
Q 008727 203 ---------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR--------VE----EAFKVLDELRI-RECKPD 260 (556)
Q Consensus 203 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--------~~----~A~~~~~~m~~-~~~~p~ 260 (556)
.++..+...+...... .+...|. .. .......++.+ ...+--
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDEL----------------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccc----------------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 0000010000000000 0000000 00 00000000000 000001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 008727 261 FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS 340 (556)
Q Consensus 261 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (556)
..-...+.++..+..++..+++-+....+.. -+..-++..-.+|...|.+..+....+...+.|...- .-++.+-..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~ 300 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKA 300 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHH
Confidence 1223445555566666666666666665543 2333344444566666666666666555544433211 112222111
Q ss_pred Hh--------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 341 VS--------SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 341 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
+. .++++.++..|.+.......|+. ..+....+++....+...-.++..-. -...-...+.+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~kGne~Fk 370 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAE-EEREKGNEAFK 370 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHH-HHHHHHHHHHh
Confidence 11 24566666666665544443322 22333334444433333332222111 11112445566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
.|++..|+..+.+++..... |...|....-+|.+.|.+..|++-.+...+.. ++....|.-=..++....++++|.+.
T Consensus 371 ~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776533 66677777777777777777777666666542 23334444444455555667777777
Q ss_pred HHHHHHC
Q 008727 493 FHNMLEK 499 (556)
Q Consensus 493 ~~~m~~~ 499 (556)
|++.++.
T Consensus 449 y~eale~ 455 (539)
T KOG0548|consen 449 YQEALEL 455 (539)
T ss_pred HHHHHhc
Confidence 7777654
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1.8e-05 Score=75.85 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-ccChh-hHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
...|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+.+++....
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666666666555555444321 11111 1111122334455666666666655544
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.8e-05 Score=72.99 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=135.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH-------HHHHHh
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM-------VSFLCT 412 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~ 412 (556)
++...+++.|++.+....+.. -+..-++..-.+|...|.+..+...-....+.|.. ...-|+.+ ..+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 355667888888888887765 45555666677788888888887777766655433 22223333 335566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhH-------------------------HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSF-------------------------YNSLMEACCREDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~-------------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (556)
.++++.++..|++.......|+... ...-...+.+.|++..|...|.++++.. +
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 6788899999988776655555322 1222445678899999999999999886 6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
-|...|....-+|.+.|.+..|++-.+..++. .|+ ...|..=..++....++++|.+.|.+..+.++
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 67888999999999999999999988888866 332 33343334455556689999999999888884
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=2.9e-05 Score=84.48 Aligned_cols=338 Identities=9% Similarity=-0.041 Sum_probs=208.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC------ccCh--hhHHHHHHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV------EFST--IGFGVFIWKF 199 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~--~~~~~li~~~ 199 (556)
.....|+++.+...++.+.......++.........+...|+++++...+....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112333344555566778999999999988754210 1111 1122233445
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----EC-KPDFIAYRIVAEEFK 272 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~ 272 (556)
...|++++|...+++.......... .....+.+...+...|++++|...+++.... |- .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111111 1233456667778899999999999887642 11 111234555666788
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CCCHH--HHHHHH-HH
Q 008727 273 LMGSVFEREVVLKKKRKL----GVA--P-RTNDYREFILGLIVERRICEAKELGEVIVSGKF--TIDDD--VLNALI-GS 340 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~~~l~-~~ 340 (556)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+........ .+... .+..+. ..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876553 211 1 112233444566778999999998887654311 11111 121111 22
Q ss_pred HhcCChhHHHHHHHHHHHcCC--CCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCccH---hhHHHHHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGR--VPTLS--TL--SNLSKNLCKRNKSDELVEVYKVLSANDYFTDM---ESYNVMVSFLC 411 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~ 411 (556)
...|+.+.|...+........ ..... .. ...+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 457899999999988754311 11111 10 11224455689999999998775542211111 11345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 412 TSGRLREAYGVIQEMKRK----GLDPD-VSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
..|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987653 32222 2456677778889999999999999999875
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00017 Score=72.89 Aligned_cols=383 Identities=11% Similarity=0.137 Sum_probs=231.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.|+..-...+.++...+-+.+.+++++.+.-.. +..+....+.|+-.-.+. +..+..+..+++.....+ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------h
Confidence 355555566777777777777777777665432 222333444444444433 334455555555433211 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+...+..++-+++|..+|+..-. +......|+. .-+.++.|.++-+... .+.+|..+..+-.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhc
Confidence 33445556667777777765432 2333333332 2366666766665553 257888888898999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
|.+.+|.+-|-+.- |...|..++....+.|.+++-...+....+...+|... ..++-+|++.+++.+..+++
T Consensus 1118 ~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 99999888875532 77788899999999999999988888777776666543 46788888888887766543
Q ss_pred HHHHcCCCCCCHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 008727 320 EVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT 398 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (556)
. .|+......+- .++..+.++.|.-+|.. ...|..+...+...|++..|...-++..
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 1 12222222221 23444555555555532 3345666666777777777665544332
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+..+|..+-.+|...+.+.-| +|...++.....-..-++..|-..|-+++-+.+++...... ......|+-|.-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 455777777777666555433 33333333344556677788888888888887777665432 334556676666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
.|++- ++++..+-++-.-.+ ...-.+++++-....|.+..-++.+-
T Consensus 1322 LYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66654 344444444444322 22345788888888888888777653
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2.8e-07 Score=83.60 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=96.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----c
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----E 448 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~ 448 (556)
..+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 3455667777777766542 255566677777888888888888888877652 233 33334444332 2
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEV 527 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 527 (556)
+.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+..+.+.. |..+...++......|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 4677777888888888888888888888887655322 556666667766777776 666777
Q ss_pred HHHhhhCC
Q 008727 528 FNKSVNHD 535 (556)
Q Consensus 528 ~~~m~~~~ 535 (556)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 77776544
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00023 Score=71.87 Aligned_cols=389 Identities=10% Similarity=0.088 Sum_probs=253.4
Q ss_pred CCCCCCHHHHHHHhhhhhccC-hhHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH
Q 008727 43 LRDSLSPSLVARVINPYLLTH-HSLALGFFNWASQQP-NFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120 (556)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~~~~-~~~a~~~f~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (556)
.+..-+|+-+.-..+.+...+ +.+-++++....-++ .|.-+...-|.++--.. .-+...+.++.+++..-+ .|+
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~-- 1053 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD-- 1053 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh--
Confidence 334457888877777776654 667778887765444 33334444444443333 345556666776665544 222
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
+...+...+-+++|..+|++... +..+.+.|+.- -++.+.|.+.-++.. ....|+.+..+-.
T Consensus 1054 ----ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL 1115 (1666)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH
Confidence 34556677889999999988732 55555555543 366777777666543 3468999999999
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
+.|...+|++-|-.. +++..|..+++...+.|.|++-.+.+...+++.-+|.+.+ .||-+|++.+++.+.
T Consensus 1116 ~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTEL 1185 (1666)
T ss_pred hcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHH
Confidence 999999988776433 4567888899999999999999999988887766666554 788899999998887
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHc
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEK 359 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~ 359 (556)
++++ ..||......+..-|...+.++.|.-+|..+. -|..+..-+ .-|++..|.+.-++.
T Consensus 1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 7665 45777777788888889999998887776542 233332222 124455554443332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 360 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
.+..||..+..+|...+.+..|. |-..++.....-..-++..|-..|-+++.+.+++...... +.....|+
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFT 1317 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHH
Confidence 35678888888888777665542 3333333344456788999999999999999988754321 22445666
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
-|.-.|++- ++++..+-++..-.. .| .--++.++-+..-|.+..-++.+..+
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666666654 355555554444331 11 12356666666666666666665543
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.8e-07 Score=83.56 Aligned_cols=253 Identities=12% Similarity=0.069 Sum_probs=127.7
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.+-+.+-.|+...++.-.. . ....-..+......+.+++...|+++.+ +.++.... .|.......+...+...+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCcc
Confidence 4445555566666665444 2 1111111233344556777777776643 34444433 555555555544444434
Q ss_pred ChHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 212 (556)
+-+.++.-+++........ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.+
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555443332221 2222223334455567777777776532 24455566677777777777777777
Q ss_pred HHHHhccCCCCCchhh--HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 213 DEVRKRENSMINGSVI--AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 213 ~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+.|.+. ..+...+ ..+.+..+.....+.+|.-+|+++.+. ..++..+.+.+..+....|++++|.+++.+....
T Consensus 155 ~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777654 2221111 123333333344677777777776554 4456667777777777777777777777766543
Q ss_pred CCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 008727 291 GVAPRTNDYREFILGLIVERRI-CEAKELGEVIV 323 (556)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 323 (556)
... +..+...++.+....|+. +.+.+.+.++.
T Consensus 231 ~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 231 DPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 221 233333444444444444 33444444443
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=0.0001 Score=65.30 Aligned_cols=310 Identities=15% Similarity=0.133 Sum_probs=173.9
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcC
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI-VAEEFKLMG 275 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~ 275 (556)
+.+...|++..|+.-|....+. .|++..++..-...|...|+...|+.=+....+. +||-..-.. -...+.+.|
T Consensus 46 k~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344444455555444444432 3333333322333444555555555555555543 454322111 122345566
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
.++.|..-|+.+++.... ..+ ...+..+.--.++- ......+.+++.+||...|+.....
T Consensus 121 ele~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~---------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEH---------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred cHHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHH---------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 666666666665554221 110 00111111000110 1112234455667777788887777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 435 (556)
+++-. +.+...+..-..+|...|++..|+.=++...+..-. +...+--+-..+...|+.+.++...++-.+. .||.
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 77643 235556666677888888888888777776665443 4555556667777788888888877777764 4554
Q ss_pred hH----HHHH---------HHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SF----YNSL---------MEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.. |..+ +......+++.++.+..+...+..-... ...+..+-.+|...|++.+|++...+.++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 32 1111 1122345667777777777666431111 223445566777788888998888888854
Q ss_pred CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 500 GVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 500 g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
.|| ..++.--..+|.-...+++|+.-|++..+.+..
T Consensus 337 --d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 337 --DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred --CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 454 677777778888888888888888888776643
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.2e-08 Score=58.50 Aligned_cols=31 Identities=35% Similarity=0.787 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
+.||..||++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.6e-08 Score=57.88 Aligned_cols=34 Identities=35% Similarity=0.854 Sum_probs=32.2
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 499 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999983
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=0.00013 Score=73.54 Aligned_cols=421 Identities=12% Similarity=0.007 Sum_probs=225.8
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFD 178 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (556)
+...+...|-+..+.. +.=...|..|...|+..-+...|.+.|++.-+.... +...+....+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3455555555444443 223457888888888888999999999999876543 77789999999999999999998844
Q ss_pred HHHhCCC-ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 008727 179 EMSHRGV-EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257 (556)
Q Consensus 179 ~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 257 (556)
..-+... ..-...|..+--.|.+.++...+..-|+...+. .|.+...|..+..+|.++|++..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4433221 111122222333466778889999999988866 7888999999999999999999999999887654
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-------H
Q 008727 258 KPDFIAYRIVAEE--FKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEV-------I 322 (556)
Q Consensus 258 ~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~ 322 (556)
.|+. +|...-.+ -+..|.+.+++..+...... +..--..++..+...+...|-...+..+++. .
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443 33333222 45678899998888776543 1111122333333333333333333333332 2
Q ss_pred HcCCCCCCHHHHHHHHHHH---hcCChh----HHHH-HHHHHHHcCCCCC--------------------HHHHHHHHHH
Q 008727 323 VSGKFTIDDDVLNALIGSV---SSIDPR----SAIV-FFNFMIEKGRVPT--------------------LSTLSNLSKN 374 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~---~~~~~~----~a~~-~~~~~~~~~~~~~--------------------~~~~~~ll~~ 374 (556)
.......+...|-.+-.++ ..-.++ .... ++.+....+.-|+ ..++..+...
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 2222112222222221111 000000 0000 1111111121111 1112222211
Q ss_pred HHh----cC----ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 375 LCK----RN----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 375 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
|.+ .| +...|...+....+..-. +...||.+... ...|.+.-+...|-+-.....+ +..+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEE
Confidence 111 11 112344444443332211 34444444433 3345555555555444433222 4455666666666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCHhhHHHHHHHHHccCCHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE----KGVAPDATTYTSLLEGLCQETNLQ 522 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~ 522 (556)
...+++-|...|...+... +.|...|-...-.-...|+.-++..+|..--+ .|-.|+..-|.....--...|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 6667777777777666543 33455554444444456666666666655211 244455555555555556667766
Q ss_pred HHHHHHHHh
Q 008727 523 AAFEVFNKS 531 (556)
Q Consensus 523 ~a~~~~~~m 531 (556)
+-+...+++
T Consensus 941 ~~I~t~~ki 949 (1238)
T KOG1127|consen 941 ESINTARKI 949 (1238)
T ss_pred HHHHHhhhh
Confidence 666666655
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=0.00024 Score=71.78 Aligned_cols=420 Identities=9% Similarity=-0.079 Sum_probs=237.2
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
.+...|+..|-...+.. +.=...|..+.+.|....+...|.+-|+..-+.+ ..+......+...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34445555444433221 1123567778888877778888888888887766 45777888899999999999999988
Q ss_pred HHHHHhCCCC-CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 142 FNEVKFNCED-IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.-...+.... .-...|-.+.-.|.+.++...|..-|+...+.++ -|...|..+..+|.+.|++..|.+.|......
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4333222111 0112344455566778888889888888887653 37788889999999999999999999888755
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------HH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFKLMGSVFEREVVLK-------KK 287 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-------~~ 287 (556)
.|.+...-.-..-.-+..|.+.+|...+...... +..--..++-.+...+.-.|-..++..+++ -.
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443333333344456778888888888776532 111111222222222222232222333222 22
Q ss_pred HhcCCCCChhhHHHHHH-------------------H----HHhcCCH---H---HHHHHHHHHHcCCCCCCHHHHHHHH
Q 008727 288 RKLGVAPRTNDYREFIL-------------------G----LIVERRI---C---EAKELGEVIVSGKFTIDDDVLNALI 338 (556)
Q Consensus 288 ~~~~~~~~~~~~~~ll~-------------------~----~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (556)
......-+...|..+-. . .-..+.. + .+.+.+-.-++. .......||..+
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhH
Confidence 22221111111211111 1 1111111 1 000000000000 001223356666
Q ss_pred HHHhc----C----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 339 GSVSS----I----DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 339 ~~~~~----~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
+.+.. + +...|+..+.+..+.. .+...+-..+......|++.-+.-.|-.-....+. ...+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 55441 1 3345666666665542 23333333444446667777666666554444433 666888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH----HcCCCCCHHHHHHHHHHHHccCCH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF----ASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
.+..+++-|...|.......+. |...|--....-...|+.-++..+|..-. ..|-.|+..-|-....-....|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 9999999999999988876433 55566555445556788888888887622 223355555555555556667775
Q ss_pred HHHHHHH
Q 008727 487 EGALRLF 493 (556)
Q Consensus 487 ~~A~~~~ 493 (556)
++-+...
T Consensus 940 e~~I~t~ 946 (1238)
T KOG1127|consen 940 EESINTA 946 (1238)
T ss_pred HHHHHHh
Confidence 5544433
No 103
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.00058 Score=68.43 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=160.1
Q ss_pred CCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhHhCCCCCCHHhHHH
Q 008727 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRF 124 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (556)
+....+..+...+..+++..|++-...+.++++ +. .|..++.++ .+.|+.++|..+++.....+. -|..|...
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~ 82 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHP---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQF 82 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCC---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHH
Confidence 445555566666667788899999998887764 32 344555554 589999999998888777664 38889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh--
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-- 202 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 202 (556)
+-..|.+.+..++|..+|+..... .|+......+..+|++.+++.+-.+.=-++.+. .+-+...|=.++......
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999875 456778888888999888876544433333332 222444444455444432
Q ss_pred --------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHh
Q 008727 203 --------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 203 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
--..-|.+.++.+.+..| ......-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123456777777777643 22222222223344556788999999984 34333223344444556677778
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 008727 274 MGSVFEREVVLKKKRKLGVA 293 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~ 293 (556)
.+++.+..++-.++...|..
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc
Confidence 89999998888888887654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=5.9e-06 Score=73.85 Aligned_cols=187 Identities=7% Similarity=-0.094 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--H
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--E 155 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 155 (556)
......+..+...+...|+++.|...|+++.... +.+ ...+..+..++.+.|++++|...++.+.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888889999999999999888764 222 246677888889999999999999999776443111 2
Q ss_pred hHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCccChh-hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch
Q 008727 156 ICNSLLAVLASD--------GYIDNALKMFDEMSHRGVEFSTI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 156 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
++..+..++.+. |++++|.+.|+.+.... |+.. .+..+... .. .. ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~------~~~----------~ 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LR------NRL----------A 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HH------HHH----------H
Confidence 455555556554 67888888888887753 3322 22111110 00 00 000 0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIREC-KP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 227 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
.....+...+.+.|++++|...++...+... .| ....+..+..++.+.|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112355667788888888888888776521 12 3456777888888888888888887777654
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.1e-05 Score=76.29 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=132.3
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+..+. +..+.-.|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34456666777777777666665 456667777777777777777777777777666443 5566666667777777777
Q ss_pred HHHHHHHHHHhCCCc-----c---ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 172 NALKMFDEMSHRGVE-----F---STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~-----~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
.|.++|+..+....+ + +...-.. ..+.....+....++|-++....+ ...++.++..|.-.|--.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcchHHH
Confidence 777776665443210 0 0000000 122333444555556655555412 2244566666666677777777
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 244 EAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
.|.+.|+..... +| |...||-|...++...+..+|+..|++.++.....-..-|+ |.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHH
Confidence 777777776654 33 45567777777777777777777777766643222222333 344666777777777665544
Q ss_pred H
Q 008727 323 V 323 (556)
Q Consensus 323 ~ 323 (556)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=0.00016 Score=70.50 Aligned_cols=138 Identities=11% Similarity=0.155 Sum_probs=84.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+.+.....++.+|+.+++.+...+. -..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677777777776665432 2234566667777777777777777542 1245566777777777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+.|.++-.+... -......|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777655542 23344455555555666777777777665442 2332 456677777777777777653
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.2e-05 Score=75.94 Aligned_cols=219 Identities=12% Similarity=0.012 Sum_probs=136.0
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
+.+.|++.+|.-.|+......+. +..+|-.|....+.+++-..|+..+.+..+.+. -+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788888888887776544 777888888888888888888888888777642 2444555566667777777777
Q ss_pred HHHHHHHHhccCCCCCchhhHHHH---------HHHHhccCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLI---------IHGFCKGKRVEEAFKVLDELR-IRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l---------i~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
.++++.-... .|+ ..|... -..+.....+....++|-++. ..+..+|...+..|--.|.-.|+++
T Consensus 373 l~~L~~Wi~~---~p~--y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRN---KPK--YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHh---Ccc--chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 7777666443 111 000000 011222223444555555543 3333456666666666666777777
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008727 279 EREVVLKKKRKLGVAP-RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 356 (556)
+|.+.|+..+.. +| |...|+.|--.+....+.++|...|.+.++..+..-..-||..|++...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777777776663 34 33456666667777777777777777777665555556677777666666666666665443
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=0.00036 Score=61.90 Aligned_cols=205 Identities=7% Similarity=-0.045 Sum_probs=109.5
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 277 (556)
.+...||...|++++..+.+. .|-+...+..-..+|...|++..|+.=++...+.. .-++.++--+-..+...|+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 344556666666666666654 55555666666666666776666665555444332 12344444455555666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
+.++...++.++. .||....-. .|-+ +.+..+.++.+. .....+++.++++..+...
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~---~YKk---lkKv~K~les~e---------------~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFP---FYKK---LKKVVKSLESAE---------------QAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHH---HHHH---HHHHHHHHHHHH---------------HHHhhhhHHHHHHHHHHHH
Confidence 6666666665552 333321110 0111 111111111111 1122334555555555555
Q ss_pred HcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 358 EKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 358 ~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
+...... ...+..+..++...|++.+|++.-.++.+.... |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5443311 223344556666777777777777777665432 46666666677777777778877777777653
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=1e-05 Score=69.33 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF-SEVGE--IEGA 489 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 489 (556)
.++.+++...++...+.... |...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44555555556655554433 55666666666666666666666666666643 33455555555543 45555 3666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.++
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666655322 455555566666666666666666666665554
No 110
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=9.1e-05 Score=68.30 Aligned_cols=185 Identities=14% Similarity=0.075 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK--SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 423 (556)
+++++..++++.+.+.+ +..++..--..+.+.|+ .+.+..+++.+.+.+.+ +..+|+...-.+...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555555555544332 22233333223334443 24566666666666554 6667777666677777777777777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhhc---CCh----hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHH
Q 008727 424 QEMKRKGLDPDVSFYNSLMEACCRE---DLL----RPAKKLWDQMFASGCSGNLKTYNILISKFSEV----GEIEGALRL 492 (556)
Q Consensus 424 ~~m~~~~~~p~~~~~~~ll~~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~ 492 (556)
+++++.++. |...|+.....+.+. |.. ++..+...+++... +-|...|+.+...+... ++..+|.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 777776554 556666555554443 222 34555555555543 44566677776666663 334557777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC------------------CHHHHHHHHHHhhhCC
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQET------------------NLQAAFEVFNKSVNHD 535 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~~~~ 535 (556)
+.+..+.++. +......|+..|+... ..++|.++++.+.+.+
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 7776654322 4555666666666422 3467888888884333
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=4.6e-05 Score=75.02 Aligned_cols=259 Identities=11% Similarity=0.068 Sum_probs=159.4
Q ss_pred CCHHhHHHHHH--HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-C--------C
Q 008727 117 LDSSVYRFIIP--SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-G--------V 185 (556)
Q Consensus 117 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~ 185 (556)
-|..|...++. .|..-|+.+.|.+-.+.+. +..+|..+.+.|.+..+.|-|.-.+-.|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46667777765 4678899999998888775 5578999999999999999888887777542 1 1
Q ss_pred ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 008727 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265 (556)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 265 (556)
.|+ .+-....-.....|.+++|+.+|.+.++. ..|=..|-..|.|++|.++-+.--+- . =..||-
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYY 862 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHH
Confidence 122 22222333456778899999999888764 22345566788999998887643221 1 124555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cC
Q 008727 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SI 344 (556)
Q Consensus 266 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 344 (556)
.-...+-..++.+.|++.|++.... -...+..|.. ++.....+.+.+ .|...|.---.++. .|
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhccc
Confidence 5555566678888888888753211 0011111110 011111111111 12233332222322 47
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|..+|.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77888887776543 455666667778888887776542 2 55566777888888888888888887
Q ss_pred HHH
Q 008727 425 EMK 427 (556)
Q Consensus 425 ~m~ 427 (556)
+..
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 654
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.5e-05 Score=71.22 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 475 ILISKFSEVGEIEGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+...|.+.|++.+|...+++..+... +.....+..+..++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455678899999999999999987621 1234678889999999999999999998876543
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=8.7e-05 Score=77.40 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCcc---ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHR-GVEF---STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
..|-..|....+.++.++|+++.++.... ++.- -...|.++++.-...|.-+...++|+++.+. -+...+|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----cd~~~V~~ 1534 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----CDAYTVHL 1534 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----cchHHHHH
Confidence 34555555555555555555555554432 0100 0123334444333444444444444444432 12233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
.|...|.+...+++|-++|+.|.++ ..-....|...+..+.+.++-+.|..++.+.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4444555555555555555554443 112333444444444444444444444444433
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=3e-05 Score=66.24 Aligned_cols=158 Identities=15% Similarity=0.018 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 88 HSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
...-..+.-.|+-+....+........ +.|.......+....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455555555555555554433321 3344555556666666677777777666665543 33666666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 247 (556)
|+++.|..-|.+..+.-. -+...++.+.-.+.-.||.+.|..++...... .+.+..+-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666655321 13334444444555556666666666555543 23334444455555555666666655
Q ss_pred HHHH
Q 008727 248 VLDE 251 (556)
Q Consensus 248 ~~~~ 251 (556)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=0.0016 Score=64.67 Aligned_cols=330 Identities=8% Similarity=0.036 Sum_probs=166.9
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC--------CCCCCHHhHHHHHHHHHcCC
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN--------KITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~ 133 (556)
++.+.|++-.+.+ .+...|..+.+.|.+.++++-|.--+-.|... ..+.+..+-..+.-.-.+.|
T Consensus 742 G~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 4455555544433 24568889999998888888776655555331 01111122223333445678
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (556)
.+++|..+|.+..+. ..|=..|-..|.+++|.++-+.--+-.. ..||-.-..-+-..+|.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 888888888887653 2333445566888888776554322222 1344444445556677777777766
Q ss_pred HHHhc-----------c------CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 214 EVRKR-----------E------NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 214 ~~~~~-----------~------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
..... . -....+...|.-....+-..|+.+.|+.+|...++ |-.+++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 43211 0 00011122333233334456667777666665442 2233444444455
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC--------CCCCCHHHHHHHH----------
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG--------KFTIDDDVLNALI---------- 338 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~---------- 338 (556)
.++|-.+-++- -|....-.+.+.|-..|++.+|..+|.....- ....+...+|..+
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 55554444331 12222333444555555555555554433210 0111222222221
Q ss_pred -HHHh-c-CChhHHHHHHHH---------------------HHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008727 339 -GSVS-S-IDPRSAIVFFNF---------------------MIEK--GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392 (556)
Q Consensus 339 -~~~~-~-~~~~~a~~~~~~---------------------~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 392 (556)
.+|. . +..+.|..+|.+ ++.. ....|+...+...+.++...++++|..++-..+
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111 1 133333333321 1112 233456777777777888888888888877654
Q ss_pred h----------CCC----------------CccH----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 393 A----------NDY----------------FTDM----ESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 393 ~----------~~~----------------~~~~----~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+ .++ .|+. .....+...|.++|.+..|-+-|.+
T Consensus 1108 ~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1108 EFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2 111 1122 1455566777788888888777654
No 116
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00019 Score=66.25 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=101.1
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH--hH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI--DN 172 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 172 (556)
..++.++|..+.+++++.. +-+..+|+..-..+...| ++++++..++++....++ +..+|+.....+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3456666666666666654 333444544444444555 466777777776665444 555666555555555542 55
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc---CC----HHHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG---KR----VEEA 245 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~A 245 (556)
+.++++.+.+.+. -+..+|+....++...|+++++++.++++.+. .+.+..+|+.....+.+. |. .+++
T Consensus 127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 6666666666543 25566666666666667777777777777655 444455555443333332 11 2344
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLM----GSVFEREVVLKKKRK 289 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~ 289 (556)
.+...+...... -|...|+.+...+... ++..+|.+.+.+...
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 555544444321 2445565555555542 233445555555444
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=9.8e-05 Score=77.04 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=123.9
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC---CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CED---IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG 191 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 191 (556)
|.+...|-.-|....+.++.++|.+++++.... ++. --..+|.++++.-...|.-+...++|++..+.- -.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 344555666666666666666666666666432 110 012256666666666666666666666665532 12244
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD---FIAYRIVA 268 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll 268 (556)
|..|...|.+.+++++|.++++.|.++.+ ....+|...+..+.++++-+.|..++.+..+. -|. .....-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 56666666666666666666666666533 33456666666666666666666666665543 222 12222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHH
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD--DVLNALIGSV 341 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 341 (556)
..-.+.|+.+.+..+|+.....-.+ ....|+..+..-.+.|+.+.++.+|++++..++.+.. ..|..-+.+-
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 3344566666666666666554322 2335666666666777777777777777666655543 3445555443
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=0.00022 Score=69.61 Aligned_cols=337 Identities=14% Similarity=0.059 Sum_probs=153.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
-.+.++++...|+-++|-++-+ + +-.+ .+.|..|.+.|..-.|.+....=.. ...|......+..++.+
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik 660 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIK 660 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhcc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHh
Confidence 3455677777777776654321 1 1112 2346778888887777665432211 12355566666666666
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchh-hHHHHHHHHhccCCHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV-IAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A 245 (556)
..-+++|-.+|+.+..- ...+..|-+..-+.+|+++-+-.- |...+ .-......+...|+++.|
T Consensus 661 ~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfaf------p~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAF------PEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred hHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhC------cHHHhhHHHHHhHHHHHHHhHHHH
Confidence 66666666666655321 122222323333444444332221 00000 001122233344455555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
..-|-+... ....+.+......|.+|+.+++.++.... ...-|..+...|...|+++.|.++|.+.
T Consensus 726 inhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 726 INHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 444433221 11223334444555555555555444322 1223444455555555555555554322
Q ss_pred CCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 326 KFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 326 ~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
..++-.+.+|. .|.+++|.++-.+. .|.......|..-..-+-+.|++.+|+++|-.+.. |+
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~----- 854 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD----- 854 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----
Confidence 12333333433 24455555444332 22233334444444444555666666655543322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
..|+.|-+.|..+..+++.++-.-.. -..|...+..-+-..|+...|.+-|-+..+ |.+-+..|-..+
T Consensus 855 ~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 855 KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 23455666666666665555432111 122333444455555666666555544332 334444444455
Q ss_pred CHHHHHHH
Q 008727 485 EIEGALRL 492 (556)
Q Consensus 485 ~~~~A~~~ 492 (556)
-|++|.++
T Consensus 923 lw~dayri 930 (1636)
T KOG3616|consen 923 LWEDAYRI 930 (1636)
T ss_pred hHHHHHHH
Confidence 55544443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.0013 Score=62.16 Aligned_cols=409 Identities=12% Similarity=0.144 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.|..+|+.+|+-+..+ ..+++++.++++... .+.+...|..-|+.-.+.++++..+.+|.+.... ..+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 35778888888877665 888888888888764 3567778888888888888888888888888765 3367777776
Q ss_pred HHHHHhc-CCHhH----HHHHHHH-HHhCCCccCh-hhHHHHHHH---------HHhhCcHHHHHHHHHHHHhccCCCCC
Q 008727 161 LAVLASD-GYIDN----ALKMFDE-MSHRGVEFST-IGFGVFIWK---------FCENAKLGQVLSMLDEVRKRENSMIN 224 (556)
Q Consensus 161 i~~~~~~-g~~~~----a~~~~~~-m~~~~~~~~~-~~~~~li~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 224 (556)
+..-.+. |+... ..+.|+- +.+.|+.+-. ..|+..+.- +....+++...++++++... + ..+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-P-m~n 170 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-P-MHN 170 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-c-ccc
Confidence 6654433 22222 2233333 2334433222 223333321 22334556666677766543 1 111
Q ss_pred chhhHHH-----------HHHHH--hccCCHHHHHHHHHHHhh--CCCCCCHHH---------------HHHHHHHHHhc
Q 008727 225 GSVIAVL-----------IIHGF--CKGKRVEEAFKVLDELRI--RECKPDFIA---------------YRIVAEEFKLM 274 (556)
Q Consensus 225 ~~~~~~~-----------li~~~--~~~~~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~~~ 274 (556)
-...|+- ...-+ -+...+-.|.++++++.. +|......+ |-.+|.- -+.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Eks 249 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKS 249 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hhc
Confidence 1122221 01111 123345566666666542 232211111 2222221 111
Q ss_pred CCH---------HHHHHHHHHH-HhcCCCCChhh-HHHHH----HHHHhcCC-------HHHHHHHHHHHHcCCCCCCHH
Q 008727 275 GSV---------FEREVVLKKK-RKLGVAPRTND-YREFI----LGLIVERR-------ICEAKELGEVIVSGKFTIDDD 332 (556)
Q Consensus 275 ~~~---------~~a~~~~~~~-~~~~~~~~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 332 (556)
+-. ....-.+++. .--+..|+... +...+ +.+...|+ .+++..+++..+..-...+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0011111211 11233332221 11111 12222333 355666666665544333444
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-cHhhHHHHH
Q 008727 333 VLNALIGSVS----SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMV 407 (556)
Q Consensus 333 ~~~~l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 407 (556)
.+..+...-. .+..+.....++++...-..--..+|..+|+..-+..-+..|..+|.+..+.+..+ ++.++++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 4444433211 11355666777777665444445678888888889999999999999999987776 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccC
Q 008727 408 SFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVG 484 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 484 (556)
..||. ++..-|.++|+--.++ -+|. .--...+..+...++-..+..+|++....++.|+ ...|..++.-=..-|
T Consensus 410 Ey~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 410 EYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 98875 7889999999965554 2333 3445677778888999999999999999876665 478999999999999
Q ss_pred CHHHHHHHHHHHHHC
Q 008727 485 EIEGALRLFHNMLEK 499 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~ 499 (556)
+...+.++-+++...
T Consensus 487 dL~si~~lekR~~~a 501 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTA 501 (656)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999998888654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=3.4e-05 Score=75.11 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV 308 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 308 (556)
-..+...+...|-..+|..+|++.. .|.-+|.+|...|+..+|..+..+..+ -+||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3456777778888888888887643 455677777888888888877777666 45666677766666655
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
..-+++|.++.+..-.+ ..+......+.+++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|
T Consensus 470 ~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 55566666665544321 00000001122344455555444433322 112333444444444445555555555
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
.......+. +...||.+-.+|.+.++-.+|...+++..+.+.. +...|...+....+.|.++.|++.+.++.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 444443322 3334555555555555555555555554444422 33344444444444555555555544444
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=1.7e-05 Score=67.94 Aligned_cols=128 Identities=9% Similarity=0.155 Sum_probs=101.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hhcCC--hhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC-CREDL--LRP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~--~~~ 453 (556)
..++.+++...++...+.++. |...|..+...|...|++++|...+++..+.... +...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 356777788888887776655 7889999999999999999999999998887544 677777777764 56676 589
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 508 (556)
|.+++++..+.+ +-+...+..+...+.+.|++++|...|+++.+. ..|+..-+
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 999999999875 457788888899999999999999999999876 34444433
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=0.00028 Score=72.89 Aligned_cols=147 Identities=6% Similarity=0.029 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 34556666666666666666666666555442 22223333333344444443333332 2222
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
......++..+..++..|...+ -+...+-.+..+|-+.|+.+++...++++.+. .|.+..+.|.+...|... ++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hH
Confidence 2223333333333333333322 12234444555555555555555555555554 344455555555555555 55
Q ss_pred HHHHHHHHHHh
Q 008727 243 EEAFKVLDELR 253 (556)
Q Consensus 243 ~~A~~~~~~m~ 253 (556)
++|.+++.+..
T Consensus 166 ~KA~~m~~KAV 176 (906)
T PRK14720 166 EKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.42 E-value=2.9e-05 Score=62.80 Aligned_cols=95 Identities=8% Similarity=-0.108 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+......+...|++++|...|+........ +...|..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444555666677777777777776665432 55666667777777777777777777777653 4456666677777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008727 483 VGEIEGALRLFHNMLEK 499 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~ 499 (556)
.|++++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777644
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00022 Score=69.75 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CC
Q 008727 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-ID 345 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 345 (556)
+...+...|-...|..++++.. .+..++.+|...|+..+|..+..+..+ -+|++..|..+.+...+ .-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 3344555555566666555432 233455566666666666665555554 34455555544444332 23
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+++|.++++..... .-..+.......++++++.+.|+.-.+.++- ...+|-...-+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 45555555433221 0001111112245555555555554443222 334555555555555555555555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
-....+. +...||++-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5443211 23455555555555555555555555555554 34444455555555555555555555555543
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00062 Score=63.68 Aligned_cols=149 Identities=15% Similarity=0.062 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 008727 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (556)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (556)
...-|...+..+..+++++|+..++.+.... +-|..........+.+.|+..+|.+.++.+....+. ....+-.+.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHH
Confidence 3444555566666666666666666655442 224444445556666666666666666666665432 24455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
|.+.|++.+|+.++++....... |+..|..|..+|...|+..++..-..+ .|...|+++.|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 66666666666666666655333 566666666666666665555544332 34455666666
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=7.3e-05 Score=63.92 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 448 (556)
..+-..+...|+-+....+.......... |....+..+....+.|++.+|...+.+..... .+|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444455556666666555554433222 44455556666677777777777777766653 34667777777777777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
|+.+.|..-|.+..+.. .-+...+|.|.-.|.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777776652 334455666666667777777777777777665433 4555555666666777777777665
Q ss_pred HH
Q 008727 529 NK 530 (556)
Q Consensus 529 ~~ 530 (556)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00014 Score=62.18 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=113.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 352 FFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
+.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 34444444444343333333455788888888888777622 3334444445566777788888888888874
Q ss_pred CCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 008727 432 DPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 507 (556)
-+..|.+-|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++..++... ++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 255666666666643 34577888888888764 4788888888888888888888888888888877544 5667
Q ss_pred HHHHHHHHHccCCHHHH-HHHHHHhhhC
Q 008727 508 YTSLLEGLCQETNLQAA-FEVFNKSVNH 534 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a-~~~~~~m~~~ 534 (556)
...++..-...|...++ .+.+.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 76666666666665443 4444555443
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0015 Score=56.14 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=128.3
Q ss_pred HHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 008727 50 SLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (556)
Q Consensus 50 ~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (556)
..+..+-+.+-.|+...++..-......+ -++..-..+-++|...|.+....+ +++... .+.......+...+
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~~---~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSSK---TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYL 82 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhcccc---chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHh
Confidence 34445556666677766666554432222 234444445567777777655433 333332 33444444444444
Q ss_pred HcCCChHHHH-HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHH
Q 008727 130 IQGKNTQKAF-SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (556)
Q Consensus 130 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 208 (556)
..-++.++-+ ++.+.+......-+......-...|...|++++|++...... +......=+..+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 334444433333232333344556777888888888776521 223333334456677788888
Q ss_pred HHHHHHHHhccCCCCCchhhHH----HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAV----LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
.+.++.|.+. ++..+.+ +.+......+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++
T Consensus 157 ~~~lk~mq~i-----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 157 EKELKKMQQI-----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHcc-----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 8888888754 2233333 3344444456688888888888764 4677777777777888888888888888
Q ss_pred HHHHhcCC
Q 008727 285 KKKRKLGV 292 (556)
Q Consensus 285 ~~~~~~~~ 292 (556)
++.+....
T Consensus 231 ~eaL~kd~ 238 (299)
T KOG3081|consen 231 EEALDKDA 238 (299)
T ss_pred HHHHhccC
Confidence 87776543
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0011 Score=56.46 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 345 DPRSAIVFFNFMIE---KG-RVPTLS-TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 345 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...-+. +..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhH
Confidence 34444444444432 12 333322 3344455566677777777777777664311 222211111223445777888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+++++.+.+.... |..++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888877776532 5556655555555566666777766666654 5677778888888888888888888888887743
Q ss_pred CCCC-CHhhHHHHHHHHHcc---CCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 500 GVAP-DATTYTSLLEGLCQE---TNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 500 g~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
.| ++..+..+...+.-. .+.+-|.+++.+.++.++.-....+..+
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 33 334444444444332 3566777777777777765555555533
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=5.4e-05 Score=61.23 Aligned_cols=104 Identities=6% Similarity=-0.135 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
+......+...|++++|...|+......+. +...|..+..++...|++++|...|++..+.... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 445566778899999999999998887655 7788899999999999999999999999987543 77888889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-HHHHHH
Q 008727 448 EDLLRPAKKLWDQMFASGCSGN-LKTYNI 475 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 475 (556)
.|+.++|...|+...+. .|+ ...|..
T Consensus 105 ~g~~~eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 99999999999999885 444 444433
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00017 Score=73.66 Aligned_cols=182 Identities=9% Similarity=0.057 Sum_probs=132.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 80 FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
+..++..+..|..+..+.|.+++|..+++...+.. |-+......+...+.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34678888888899999999999999999988875 456677788888899999999999999999887655 7778888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+..++.+.|++++|..+|++....+. -+..++..+...+-..|+.++|...|+..... ..+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~---~~~~~~~~~~~~------ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA---IGDGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCcchHHHHHHH------
Confidence 88899999999999999999987432 24677777888888889999999999988875 222234443322
Q ss_pred CCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHh
Q 008727 240 KRVEEAFKVLDELRIRE----CKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~~~~~ 273 (556)
+++..-...++.+.-.+ ..........+|..+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 23344445555554332 22233445555555544
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=5.5e-05 Score=60.80 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
...+...+...|++++|.+.++.....+.. +...+..+...+...|++++|...++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444444555555555555555443321 34444445555555555555555555544432 3334444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008727 483 VGEIEGALRLFHNMLE 498 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~ 498 (556)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00062 Score=70.45 Aligned_cols=168 Identities=12% Similarity=0.030 Sum_probs=108.2
Q ss_pred CHHHHHHHhhhh-hccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHH
Q 008727 48 SPSLVARVINPY-LLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (556)
Q Consensus 48 ~~~~~~~~l~~~-~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (556)
-.....+++..+ ..++++.|.+..+......+-.+....+..+ .+...++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh-----------------hhh
Confidence 445566788877 5577899999999765555433333333333 55566665554433 333
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 206 (556)
.......++.-+..+...+...+ -+..++-.|..+|-+.|+.++|..+|+++.+.+ +-|..+.+.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 34444445544444444554432 255577888888888888888888888888876 34667777787778877 888
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
+|.+++...... |...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~-----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR-----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH-----------------HHhhhcchHHHHHHHHHHhc
Confidence 888888776543 44455666666666666654
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00048 Score=64.39 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
+...|.+++|+..++.+.... +-|..........+.+.++.++|.+.++.+... .|.....+..+..++.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChH
Confidence 334455555555555554431 112223333344455555555555555555544 3333444444555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
+|.++++...... +-|...|..|..+|...|+..++.....+..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 5555555544432 2244555555555555555555554444443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.6e-06 Score=49.70 Aligned_cols=33 Identities=52% Similarity=0.940 Sum_probs=24.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00037 Score=71.24 Aligned_cols=148 Identities=9% Similarity=-0.040 Sum_probs=121.8
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
.+.++..+..|.....+.|.+++|..+++...+..++ +...+..+..++.+.+++++|+..+++...... -+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 4567889999999999999999999999999887544 677889999999999999999999999988753 24455666
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
+..++.+.|++++|..+|+++... .|.+..++..+...+-+.|+.++|...|+...+. ..|.+..|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 777888899999999999999975 5666788888899999999999999999998765 233445555443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.7e-06 Score=48.60 Aligned_cols=32 Identities=44% Similarity=0.788 Sum_probs=18.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 503 (556)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=6.2e-05 Score=60.50 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=92.1
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 422 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
.+++....... +......+...+...|++++|.+.++.+...+ +.+...|..+...|...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555554322 34556677788889999999999999998865 5678889999999999999999999999988764
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+.+...+..+...+...|++++|...+++..+.++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 335677777888999999999999999999887743
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.0001 Score=69.40 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
......++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++++..+.... +..........
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445566777777888888888888888764 33 4455777777778888888888888865332 56666667777
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
|.+.++.+.|.++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888888852 3345688888888888898888888887765
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.3e-06 Score=48.03 Aligned_cols=33 Identities=39% Similarity=0.881 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455566666666666666666666655555554
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00026 Score=66.66 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
....++..+...++++.|..+|+++.+.. |+. ...+.+.+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667889999999999999874 553 4457888888888899999999999753 456677777778899
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+.++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999966 454 5699999999999999999999999874
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.7e-06 Score=47.26 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCcc
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 187 (556)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=0.00011 Score=69.54 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.++++.|.+.|..+.+.++++.=...|+.||..++|.++..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 344555555555555555555444455555555555555555555555555555554444443334444444444433
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00035 Score=56.75 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--HhHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP--EICNSL 160 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 160 (556)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .+.-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3556666666666665543 222 122233445555666666666666666554422221 133344
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHH
Q 008727 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (556)
...+...|++++|+..++...... .....+......+.+.|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555666666666654432221 122233334444444444444444443
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0075 Score=51.62 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDV-LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 379 (556)
.++-+....|+.+.|...++.+.+.-+ .+..+ --..+..-..|.+++|+++++.+++.+ +.|..++..=+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 334455555666666666665554431 12111 111111223466777777777777665 335556655555566667
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh---hcCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACC---REDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---~~~~~~~a~ 455 (556)
+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++.-. .|.. ..+..+...+. ...+.+.+.
T Consensus 135 K~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7667777776666643 348888888888888888888888888888765 3433 33333333332 334567778
Q ss_pred HHHHHHHHc
Q 008727 456 KLWDQMFAS 464 (556)
Q Consensus 456 ~~~~~~~~~ 464 (556)
++|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 888888764
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00053 Score=55.72 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
...+...|++++|+..++......+ ....+......|.+.|+.++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444433222111 22233333444444444444444444
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=0.00019 Score=67.91 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=89.8
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 008727 396 YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (556)
.+.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+++.++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3346666777777777777778888887777664 12122345568888888888888888888887788888888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887776666677776666666665
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.7e-05 Score=44.57 Aligned_cols=29 Identities=48% Similarity=0.843 Sum_probs=14.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 500 (556)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.035 Score=54.63 Aligned_cols=175 Identities=14% Similarity=-0.030 Sum_probs=97.7
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCC--------ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDI--------GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 186 (556)
.|.+..|..|.+.-...-.++.|+..|-..... |++. +...-.+=+. +-.|++++|+++|-+|-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477788888877766666667776666554321 2211 1111111122 224888999999888876653
Q ss_pred cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHH
Q 008727 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (556)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 263 (556)
.|..+.+.|||-.+.++++.- |...++ ..+|+.+...++....|++|.+.|..-...
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 455677778887777776543 222222 346777778888878888888877654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
...+.++.+..++++-+.+.+.+.+ +....-.+...+.+.|.-++|.+.+
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1244555555555544444333221 2223333444555555555555443
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.0004 Score=51.14 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CccHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSG--------RLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666666655432 2334556666666666666666666666
Q ss_pred HHHh
Q 008727 443 EACC 446 (556)
Q Consensus 443 ~~~~ 446 (556)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 6554
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0048 Score=56.56 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=52.4
Q ss_pred HHhcc-CCHHHHHHHHHHHhh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-hHHH
Q 008727 235 GFCKG-KRVEEAFKVLDELRI----RECKP--DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-----TN-DYRE 301 (556)
Q Consensus 235 ~~~~~-~~~~~A~~~~~~m~~----~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~ 301 (556)
.|-.. |+++.|.+.|++..+ .| .+ -...+..+...+.+.|++++|.++|++........+ .. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 556666665555432 11 11 112344455566677777777777776655432211 11 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCC--CCC--HHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKF--TID--DDVLNALIGSVSSIDP 346 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~ 346 (556)
.+-++...||...|.+.++......+ ..+ ......++.++..+|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 33355556777777777776654432 111 2345555566665543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00036 Score=51.73 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=43.7
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3444444555555555555554432 22224444455555555555555555555544321 122344445555555555
Q ss_pred HHHHHHHHHHhhh
Q 008727 521 LQAAFEVFNKSVN 533 (556)
Q Consensus 521 ~~~a~~~~~~m~~ 533 (556)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00048 Score=50.76 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 200 (556)
-..+.+|+.|...+++|+..+|+.++..+.
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 345566666666666666666666665443
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=4.2e-05 Score=42.97 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
++|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999998874
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0015 Score=50.93 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=11.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
..+...+.+.|+.++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.0016 Score=50.73 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CChHhHHHHHH
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED--IGPEICNSLLA 162 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 162 (556)
+..+...+.+.|++++|.+.|+.+.+... +.....+..+...+.+.|+++.|...|+.+....+. ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444455555555555555544320 011223334444455555555555555554432211 11233444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhC
Q 008727 163 VLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~ 183 (556)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444445555555555544443
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00086 Score=49.62 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+..+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 444555666667777777777776665322 33556666666777777777777777766653 3344566677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 008727 483 VGEIEGALRLFHNMLE 498 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~ 498 (556)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777777654
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.042 Score=48.87 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 267 VAEEFKLMGSVFEREVVLKKKRKL--GVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
+...|.+.|.+..|..-++.+.+. +..........+..+|...|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334466666666666666666654 23333334455556666666666666554433
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.0018 Score=54.22 Aligned_cols=104 Identities=20% Similarity=0.401 Sum_probs=64.8
Q ss_pred ccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 008727 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (556)
.+..+|..+++.|.+. |.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 3777888888887654 5677777777888888888888888888887764 2211 111111110
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
.-| ..+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12334566777777777777777777777777666554
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00015 Score=52.45 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred CChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
|+++.|+.+++++.+..- .++...+-.+..+|.+.|++++|.+++++ .+.+.. +......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555554321 11233333345555555555555555544 211111 112222334445555555555555
Q ss_pred HHH
Q 008727 528 FNK 530 (556)
Q Consensus 528 ~~~ 530 (556)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0045 Score=51.98 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555554322221 2345555555555555555555555555432 2233444444445
Q ss_pred HHccCC
Q 008727 480 FSEVGE 485 (556)
Q Consensus 480 ~~~~g~ 485 (556)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555444
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0072 Score=59.99 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=78.7
Q ss_pred CCccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcC--------ChhhHHHHHHHH
Q 008727 396 YFTDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCRED--------LLRPAKKLWDQM 461 (556)
Q Consensus 396 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~~ 461 (556)
.+.+...|...+++.... +..+.|..+|++..+. .|+ ...|..+..++.... +...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 334566666666664332 2255677777777665 333 233333333222111 122333333332
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 462 FAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 462 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
... ....+...|.++.-.....|++++|...++++.+.. |+...|..+...+...|+.++|.+.+++..+.++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 123345666666656666777777777777777553 5666777777777777777777777777777665543
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.015 Score=46.60 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
..-.+..-+...|++++|.++|+-+....+. +..-|-.|.-+|-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444445566778888888888877776433 55566777777778888888888888888765 456777777788888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 008727 482 EVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~ 499 (556)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877754
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0023 Score=60.68 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhH
Q 008727 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 454 (556)
+...|+++.|++.|+++.+.... +...|..+..+|...|++++|+..+++..+.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 33444555555555544444332 3344444444444444555554444444443221 333444444444444444444
Q ss_pred HHHHHHHHH
Q 008727 455 KKLWDQMFA 463 (556)
Q Consensus 455 ~~~~~~~~~ 463 (556)
...|++..+
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 444444444
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0035 Score=57.22 Aligned_cols=130 Identities=11% Similarity=0.074 Sum_probs=79.2
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH-HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK-FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. .+.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHH
Confidence 356677777777777777777777776533 1223333333323 33346666677777777766 555566677777
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+.+.+.++.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777655 2233 36666666666677777777776666553
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.0015 Score=54.64 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----------------CHHHHHH
Q 008727 363 PTLSTLSNLSKNLCK-----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG----------------RLREAYG 421 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 421 (556)
.+..+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355566666666553 4666667777777888888888888888887765421 2345566
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 422 VIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 422 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
++++|...|+.||..++..+++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666665444
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.082 Score=49.51 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHH----HHHhh---cCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHc
Q 008727 416 LREAYGVIQEMKRKGLDPDVSFYNSLM----EACCR---EDLLRPAKKLWDQMFASGCSGN----LKTYNILISK--FSE 482 (556)
Q Consensus 416 ~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~ 482 (556)
-++|+++++...+-.. -|...-|.+. .+|.. ...+.+-..+-+-+.+.|++|- ...-|.|.+| +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 5677777777665421 1333322222 22322 1223334444444556677664 3344445443 457
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+|++.++.-.-..+. .+.|++.+|..+.-++....++++|.+++.++.-
T Consensus 475 qgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 899999887766665 4689999999988888999999999999997644
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00019 Score=51.85 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987542 2455666689999999999999999998 3332 2233445566889999999999999
Q ss_pred HHHHH
Q 008727 492 LFHNM 496 (556)
Q Consensus 492 ~~~~m 496 (556)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0026 Score=53.26 Aligned_cols=94 Identities=17% Similarity=0.047 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP--DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
..|..+...+...|++++|+..|++.......| ...+|..+...+...|++++|+..++...+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555666666677777777777666543222 12356666667777777777777777766542 223344555555
Q ss_pred HHH-------ccCCHHHHHHHHHH
Q 008727 479 KFS-------EVGEIEGALRLFHN 495 (556)
Q Consensus 479 ~~~-------~~g~~~~A~~~~~~ 495 (556)
.+. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 55555544444433
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0032 Score=57.43 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS-LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
.+|..+++..-+.+..+.|+++|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777888888888888899998888654 3344455444444 23346666788888888765 34477888888888
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 22222 36666666666667777777776666654
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.002 Score=56.63 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=80.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhh
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 453 (556)
-+.+.+++.+|+..|...++..+. |.+-|..=..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 377889999999999999887765 7778888888999999999998888887775322 35688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
|.+.|++.++ +.|+-.+|-.=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999988887 5677766654443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.01 Score=54.43 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCC--HhHHHHHHHHHhhc-CChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHH
Q 008727 415 RLREAYGVIQEMKR----KGLDPD--VSFYNSLMEACCRE-DLLRPAKKLWDQMFAS----GCSGN--LKTYNILISKFS 481 (556)
Q Consensus 415 ~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~ 481 (556)
++++|.+.+++..+ .| .|+ ..++..+...|... |++++|++.|++..+. | .+. ..++..+...+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55555555554432 12 111 23455555666666 7777777777776643 2 111 334556667777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC-----CHh-hHHHHHHHHHccCCHHHHHHHHHHhhhCCC----cccHHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP-----DAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDV----MLARSILSTFMISLC 551 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~ 551 (556)
+.|++++|.++|++....-... +.. .|-..+-++...||+..|.+.+++.....+ .....+...||.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7888888888887776542211 111 122233345566777788888877765542 223455566666553
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.45 E-value=0.007 Score=50.82 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--hHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 120 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
..+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555556666666666666666654432221 245556666666666666666666665553
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.08 Score=47.10 Aligned_cols=183 Identities=7% Similarity=-0.008 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhH---HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY---RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+..+-.....+...|++++|.+.|+.+.... +-+.... -.+..++.+.+++++|...+++..+.-+.-...-|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344455556777777777777777653 2222222 34556667777777777777777665433222333333
Q ss_pred HHHHHh--c---------------CCH---hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 161 LAVLAS--D---------------GYI---DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 161 i~~~~~--~---------------g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
+.+.+. . .+. .+|.+.|+++++. |=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH--
Confidence 333321 1 111 2334444444443 22222233333333333322
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
. ..--..+...|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|.+....+.
T Consensus 174 -l---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 001123566788888888888888888765 222233456677788888888888877765543
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.19 Score=51.35 Aligned_cols=207 Identities=10% Similarity=0.040 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH
Q 008727 45 DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124 (556)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (556)
|+..-..+...+..+..+..++|+.+.+....-++ .|..+...+-..|.+.++.++|..+|++..+.. |+......
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHH
Confidence 34444455556666656777888887776533333 377888888888999999999999999998875 67888888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HhHHHHHHHHHHhCC-CccChhhHH
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY----------IDNALKMFDEMSHRG-VEFSTIGFG 193 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~~~~~~~~ 193 (556)
+..+|++.+++.+-.++--++-+.-++ .+..+=++++.+.+... ..-|.+.++.+.+.+ ..-+..-..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 999999998877654444444332122 44444444555544311 234666777776654 211222222
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC 257 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 257 (556)
.-...+-..|++++|.+++..-... -..+.+...-+.-+..+...+++.+..++-.++..+|.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 2233556789999999998433322 11222233335567888889999999999888888753
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.16 Score=50.32 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCC--------CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITL--------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (556)
.|.+..|..+.......-.++.|+..|-+...- |++. +...-.+=+. +--|++++|.++|-++.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 378889988888877777888888777655432 2211 1111122122 23588999999998886653
Q ss_pred CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.-|..+.+.|++-...++++.--.. +-+--...|+.+...++....|++|.+.+...... .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------E 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------H
Confidence 3455666777776666665431110 00111246667777777777777777777655322 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER 310 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 310 (556)
..+.++.+..++++-+.+-..+.+ |......+...+...|.-++|.+.+-+. +. | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHH
Confidence 245555555555555555444432 4455556666666667666666554321 11 1 12345556666
Q ss_pred CHHHHHHHHH
Q 008727 311 RICEAKELGE 320 (556)
Q Consensus 311 ~~~~a~~~~~ 320 (556)
++.+|.++-.
T Consensus 893 QW~~avelaq 902 (1189)
T KOG2041|consen 893 QWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.011 Score=45.50 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+..+.+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34444555555555555555443322 1223333444444455555555555444331111112222222334555566
Q ss_pred CHHHHHHHHHHHh
Q 008727 241 RVEEAFKVLDELR 253 (556)
Q Consensus 241 ~~~~A~~~~~~m~ 253 (556)
+.++|.+.+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655443
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0054 Score=58.14 Aligned_cols=90 Identities=10% Similarity=-0.059 Sum_probs=56.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 008727 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 417 (556)
..++..+++++|++.|++.++... .+...+..+..+|.+.|++++|+..++.+.+.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344556667777777766666542 24555566666666677777777777766665443 4556666666666677777
Q ss_pred HHHHHHHHHHHC
Q 008727 418 EAYGVIQEMKRK 429 (556)
Q Consensus 418 ~a~~~~~~m~~~ 429 (556)
+|+..|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777766664
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.11 Score=48.02 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhhc
Q 008727 375 LCKRNKSDELVEVYKVLSAN---DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS---FYNSLMEACCRE 448 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 448 (556)
..+.|++..|.+.|.+.... +..|+...|.....+..+.|+.++|+.--+..... |.. .|..-..++...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHH
Confidence 45667777777777776653 23344455655556666777777777766666553 222 222233345556
Q ss_pred CChhhHHHHHHHHHHc
Q 008727 449 DLLRPAKKLWDQMFAS 464 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~ 464 (556)
++|++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6777777777776654
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.015 Score=57.85 Aligned_cols=146 Identities=9% Similarity=-0.011 Sum_probs=98.8
Q ss_pred cCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 008727 359 KGRVPTLSTLSNLSKNLCKR-----NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS--------GRLREAYGVIQE 425 (556)
Q Consensus 359 ~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~ 425 (556)
...+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++... .+...+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34456667777777764432 2366888888888886543 344455444433322 122344444444
Q ss_pred HHHCC-CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 426 MKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 426 m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
..... ...+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 33321 2234567777766677789999999999999986 478889999999999999999999999999855 566
Q ss_pred HhhHH
Q 008727 505 ATTYT 509 (556)
Q Consensus 505 ~~~~~ 509 (556)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00085 Score=46.13 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=41.4
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
...|++++|++.|+.+... .|.+..++..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777765 5556666667777777777777777777777665 4554444433
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.12 Score=47.86 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++-.++-.. ..++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 55666677777888888877766553 47888888899999999998877765432 234577888888999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 999988888887762 22445667788888888776543
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.35 E-value=0.05 Score=47.00 Aligned_cols=57 Identities=2% Similarity=-0.041 Sum_probs=23.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC--CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKI--TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
...+...|++.+|.+.|+.+..... +......-.++.++.+.|+++.|...++...+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334445555555555555544310 11122333344444455555555555554443
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.35 E-value=0.0057 Score=48.88 Aligned_cols=95 Identities=7% Similarity=0.014 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
....+...+...|++++|..+|+.+...+ +-+..-|-.|.-.+-..|++++|+..|.......+. |+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33344445556666666666666665554 344455555555566666666666666666555543 5556666666666
Q ss_pred hcCCHhHHHHHHHHHHh
Q 008727 166 SDGYIDNALKMFDEMSH 182 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~ 182 (556)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.28 E-value=0.15 Score=47.21 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..+++++..++... +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445566677888888877765553 3 6888999999999999999988776542 124578889999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
+.|+..+|..+..++. +..-+..|.++|++.+|.+.--+.. |...+..+...+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 9999999988877621 2456778899999998887755543 455555444433
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0072 Score=50.54 Aligned_cols=65 Identities=17% Similarity=0.018 Sum_probs=35.7
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
...+..+...+...|++++|...|+........+ ...+|..+...+...|++++|++.++...+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344555555556666666666666665442221 1235555666666666666666666665543
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.061 Score=49.66 Aligned_cols=271 Identities=15% Similarity=0.051 Sum_probs=144.5
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHH
Q 008727 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT-NDYREFILGLIVERRIC 313 (556)
Q Consensus 235 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 313 (556)
.+.+..++.+|++.+....+.... ++.-|..-...+...|+++++.--.+.-.+. +|.. ......-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 455566677777777776665322 3444444455555556666555444332221 1111 12222333444444444
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHH
Q 008727 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNL-SKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~ 391 (556)
+|.+.++.- ..+ ....++..++....... +|...++..+ ..++.-.|++++|..+--.+
T Consensus 135 ~A~~~~~~~---------~~~----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHhhhh---------hhh----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444310 000 00112222222222211 2333333333 23455667777777776666
Q ss_pred HhCCCCccHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhHH-------------HHHHHHHhhcCChhhHHH
Q 008727 392 SANDYFTDMESYNVMVSF--LCTSGRLREAYGVIQEMKRKGLDPDVSFY-------------NSLMEACCREDLLRPAKK 456 (556)
Q Consensus 392 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~ll~~~~~~~~~~~a~~ 456 (556)
.+.. ....+...+++ +.-.++.+.+...|++.+.. .|+...- ..-.+-..+.|++..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 6543 22234444443 23456777888888777665 3443321 222233457788888888
Q ss_pred HHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh-HHHHH--HHHHccCCHHHHHHHHHH
Q 008727 457 LWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT-YTSLL--EGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 457 ~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~--~~~~~~g~~~~a~~~~~~ 530 (556)
.|.+.+.. ...|+...|-....+..+.|+..+|+.--++.... |..- ...+. .++.-.+++++|++-+++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888764 34556667777777788888888888888888754 3322 22222 334556788888888888
Q ss_pred hhhCCC
Q 008727 531 SVNHDV 536 (556)
Q Consensus 531 m~~~~~ 536 (556)
..+...
T Consensus 347 a~q~~~ 352 (486)
T KOG0550|consen 347 AMQLEK 352 (486)
T ss_pred HHhhcc
Confidence 766543
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0057 Score=53.85 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=89.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
....+++.+|+..|.+.++... -|..-|..-..+|++.|.++.|++=.+.....+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 4556789999999999888642 25566677778899999999999988888876544 556899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHh-hcCChh---hHHHHHHHHHHcCCCCCH
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACC-REDLLR---PAKKLWDQMFASGCSGNL 470 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~ 470 (556)
++.|++.++. .|+..+|-.=+...- +.+... .+..-++.....|..|+.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999988875 777777754444332 223333 333444444444543443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0013 Score=45.27 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhhhC
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNH 534 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 534 (556)
+.+|..+...+...|++++|+..|++.++... -+...|..+..+|.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34555555556666666666666666655421 13445555555555665 466666666655543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.018 Score=44.38 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---H-hhHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---A-TTYTSLLEGLC 516 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~-~~~~~l~~~~~ 516 (556)
.++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..+|++.... .|+ . .....+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 344455555666666665555554333 223444455555566666666666655543 122 1 11111223445
Q ss_pred ccCCHHHHHHHHHHhh
Q 008727 517 QETNLQAAFEVFNKSV 532 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~ 532 (556)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665555433
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.052 Score=46.94 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 008727 332 DVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (556)
Q Consensus 332 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (556)
..|......+..|++.+|.+.|+.+....... -....-.+..++.+.|+++.|...++...+.-+.-...-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 45666667777888888888888887653221 2344556677888889999998888887765433222223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDP-----DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.+......... .....+ -...+..++.-|-...-..+|...+..+.+. .-..- -.+..-|.+.|
T Consensus 87 ~~~~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~ 155 (203)
T PF13525_consen 87 LSYYKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT
T ss_pred HHHHHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcc
Confidence 22211111110 000000 0123444555555555556665555555431 11111 13566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHH
Q 008727 485 EIEGALRLFHNMLEKGVAPD----ATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~ 525 (556)
.+..|..-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999998876 333 334567778888888877544
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.023 Score=50.36 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=48.5
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc---CChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
|...|-.|...|...|+.+.|..-|.+..+... ++...+..+..++... .+..++..+|+++.+.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 555555555555555555555555555554321 1333333333333221 22345555555555543 334444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555543
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.038 Score=49.08 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---GEIEGALRLFH 494 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~ 494 (556)
....-++.-...+.. |...|-.|..+|...|+.+.|..-|.+..+.. .+++..+..+..++..+ ....++.++|+
T Consensus 140 ~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 140 ALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333334444444433 77888888888888888888888888888763 45666666666665443 34567888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 495 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
++...... |..+...|...+...|++.+|...|+.|.+..+.
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 88866332 5556666667788888888888888888877653
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.14 E-value=0.1 Score=42.63 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=65.2
Q ss_pred CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 008727 152 IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (556)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
|++.-.-.|..++.+.|+..+|...|++....-.--|......+.++....+++..|...++.+-+. +..-.++.....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CCccCCCCchHH
Confidence 3444455555556666666666666665554333334445555555555556666666666555544 111112223334
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
+.+.+...|..++|+..|+..... -|+...-...-..+.++|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 556666666766676666666654 23332222222234455555544433
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.065 Score=46.34 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH---
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM--- 442 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--- 442 (556)
.+...++..+...|.+.-....++++.+...+.++...+.+.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34455666677778888888888888887766678888888888888888888888888776643333444443333
Q ss_pred --HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 443 --EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 443 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
..|.-.+++..|...++++...+ +.|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 34556677888888888887664 445555555444555578888888888888865 455555554443
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.1 Score=48.82 Aligned_cols=171 Identities=14% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSAND---YFTDMESYNVMVSFLCT---SGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 440 (556)
+...++-+|-...+++..+++.+.+.... +.-...+--....++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344555777777777777777776641 11122222233444555 6777788887777555555667777777
Q ss_pred HHHHHhh---------cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-H---HHHHHHH---HH-HHHCC---
Q 008727 441 LMEACCR---------EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE-I---EGALRLF---HN-MLEKG--- 500 (556)
Q Consensus 441 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~---~~A~~~~---~~-m~~~g--- 500 (556)
+.+.|-. ....++|+..|.+.-+. .||..+=-.+...+...|. . .+..++- .. ..++|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766531 12356666666665543 3443322112222222222 1 1222222 11 11233
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
-..|..-+.+++.++.-.|+.++|.+..++|.+..+..|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 233555667778888888888889888888887765444
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.02 Score=49.32 Aligned_cols=134 Identities=9% Similarity=-0.009 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC---CCchhhHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM---INGSVIAVLI 232 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l 232 (556)
+-+.++.++.-.|.+.-...++.+.++.+.+-+......|.+.-.+.||.+.|...|+...+..+.. .....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3344444444455555555555555554444444444444444455555555555555444321110 0001111122
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...|.-++++.+|...|.+.....-. |....|.=.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455555666666555544211 2222332222223345566666666665553
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.0021 Score=44.10 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
.|++++|.++|+.+....+. +...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555554444333 4444444555555555555555555554443
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0031 Score=42.76 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
.+...|++++|++.|+.+.+. .|.+...+..+...+...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666666554 355555555566666666666666666665544
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.04 E-value=0.0025 Score=43.28 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=27.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..+.+.|++++|.+.|++.++... -+...+..+..++.+.|++++|..+|+++++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455555555555555554421 134444444555555555555555555554433
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.019 Score=46.73 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 507 (556)
...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455556666666666666666553 44555666666666666666666666666543 266665544
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.01 E-value=0.23 Score=48.78 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+...+...+.+...+..|-++|..|-+. .++++.....+++.+|..+-+..-+. .||+ |---.+-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhh
Confidence 3333444445556666777777766532 34556666777777777776655442 3332 223334444
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...++++|.+ +|.+.|+..+|..+++++..
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 5555555444 45556666666666666653
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.31 Score=45.75 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
+.|..+|-.+++.+...+..++.++++++|..- .+.-+.+|..-+.+=...+++.....+|.+...... +...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 357888999999999999999999999988764 345566777777777777888889999988877633 56777776
Q ss_pred HHHHHhc
Q 008727 161 LAVLASD 167 (556)
Q Consensus 161 i~~~~~~ 167 (556)
+....+.
T Consensus 116 l~YIRr~ 122 (660)
T COG5107 116 LEYIRRV 122 (660)
T ss_pred HHHHHhh
Confidence 6655544
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.019 Score=51.48 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS--TIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.|+..+..+.+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.......+.....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 445544444555666666666666665431110 124444555566666666666666666654333333333444445
Q ss_pred HHHhccCCHHHHHHHHHHHhhC
Q 008727 234 HGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
..+...|+.++|.+.|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555566666666666665554
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0047 Score=42.49 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLE 498 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 498 (556)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555666666666666666665543 334555555556666666 46666666655543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.025 Score=50.68 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTYNILIS 478 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~ 478 (556)
|...+..+.+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555555422110 1244445555555555555555555555431 0111223333344
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.+...|+.++|.++|++.++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.37 Score=47.41 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-------
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------- 506 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 506 (556)
+..+...+...+.+...+.-|-++|..|-+. ..+++.....++|.+|..+-++..+ +.||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666666777777766542 2455666677777777777666553 233322
Q ss_pred ----hHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 507 ----TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 507 ----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
-|...-.+|.++|+-.||.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344456788889999999999887543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.052 Score=44.10 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh-----hCCCcccHHHHH
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV-----NHDVMLARSILS 544 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 544 (556)
.+...++..+...|++++|.++.+.+.... +-|...|..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667788889999999999999999764 3378899999999999999999999999873 468888877654
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.56 E-value=0.33 Score=39.80 Aligned_cols=134 Identities=10% Similarity=0.009 Sum_probs=96.4
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc-cChhhHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE-FSTIGFG 193 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~ 193 (556)
..|+..-...|..++.+.|+..+|...|++....-..-|....-.+.++....+++..|...++.+-+.+.. -+..+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 357777778888899999999999999999877656668888888888888899999999999988775411 1233445
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 252 (556)
.+...+...|+.+.|+.-|+..... -..+..... ....+.+.|+.+++..-+.++
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~---Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY-YPGPQARIY---YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHH---HHHHHHHhcchhHHHHHHHHH
Confidence 5667788889999999999988876 222221222 334566777777665544444
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.52 E-value=0.038 Score=43.04 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=63.5
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
|..++..+|.++++.|+.+....+++..- |+.++... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34567777777777777777777765443 22221100 0000 1123346788888888888
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHH
Q 008727 479 KFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 516 (556)
+|+..|++..|+++.+...+. ++..+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887665 67777888888886543
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.13 Score=47.45 Aligned_cols=97 Identities=14% Similarity=-0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLS----ANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQEMKR----KG-LDPDV 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~ 435 (556)
..+..+.+++.-.|+++.|.+.|+... +.|-. ....+.-++...|.-..++++|+.++.+-.. .+ ..-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344555566666677777776665532 22211 1223455566666666666777666654221 10 01123
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
..+-+|..+|...|..++|+.+.+.-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666677777777777666655443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0066 Score=43.01 Aligned_cols=62 Identities=29% Similarity=0.481 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNMLEK----GV-APD-ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666665532 11 111 3445556666666666666666666553
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.014 Score=40.66 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.|.+.+++++|.++++++...+.. +...|......+.+.|++++|.+.|++..+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 445555555555555555544211 334444444555555555555555555555444
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.49 E-value=0.7 Score=42.72 Aligned_cols=281 Identities=12% Similarity=0.039 Sum_probs=135.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH--HhcCCHhHHHHHHHHHHhCCCccChh--hHHHHHHHHHhhCcHHH
Q 008727 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL--ASDGYIDNALKMFDEMSHRGVEFSTI--GFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~ 207 (556)
.|+-..|.++-.+..+. +..|....-.|+.+- .-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555554443221 111333333333332 2347777777777777652 1111 12222223345677777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCCHH--HHHHHHHHHHh---cCCHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKPDFI--AYRIVAEEFKL---MGSVFERE 281 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~---~~~~~~a~ 281 (556)
|.+.-+..... .|.-...+...+...|..|+|+.|+++.+.-+... +.++.. .-..|+.+-.. .-+...|.
T Consensus 173 Ar~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 173 ARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 77777766654 55556677778888888888888888887765432 333432 12223222111 11233333
Q ss_pred HHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008727 282 VVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360 (556)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 360 (556)
..-.+.. .+.||..- ......++.+.|+..++-.+++.+-+..+.|+...
T Consensus 250 ~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--------------------------- 300 (531)
T COG3898 250 DDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--------------------------- 300 (531)
T ss_pred HHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH---------------------------
Confidence 3322222 23333321 12223455666666666666665555544333221
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 008727 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKV---LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437 (556)
Q Consensus 361 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 437 (556)
+..+.+.|+. +..-++. +...... +..+--.+.++-...|++..|..--+..... .|....
T Consensus 301 -----------lY~~ar~gdt--a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 301 -----------LYVRARSGDT--ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred -----------HHHHhcCCCc--HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 1112233332 1111111 1111111 3344445555555666666666555554443 456666
Q ss_pred HHHHHHHHhh-cCChhhHHHHHHHHHHc
Q 008727 438 YNSLMEACCR-EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 438 ~~~ll~~~~~-~~~~~~a~~~~~~~~~~ 464 (556)
|..|...-.. .||-.++...+.+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6665555433 37777777777776654
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.038 Score=43.04 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
|..++..+|.++++.|+++....+++..=.-++ +.. ...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467889999999999999999998876532221 110 00000 1122345677777777777
Q ss_pred HHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKF 480 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 480 (556)
+|+..+++..|+++.+...+. +++.+..+|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777776654 5666667777766543
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=1.2 Score=44.80 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=71.9
Q ss_pred hCCCCCCHHhHHH-----HHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH--hHHHHHHHHHHhCC
Q 008727 112 VNKITLDSSVYRF-----IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI--DNALKMFDEMSHRG 184 (556)
Q Consensus 112 ~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~ 184 (556)
..|++.+..-|.. ++..+...+.+..|+++-..+...... ...+|.....-+.+..+. +++.+..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666665543 355566677777777777766433222 145566666666555321 22222222211111
Q ss_pred CccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN---GSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
. -+...|..+.......|+.+.|..+++.=... +...+ ...-+..-+.-..+.|+.+....++-.+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 24456666666666777777777776644332 11111 011122344455666676666666665554
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.86 Score=42.82 Aligned_cols=100 Identities=8% Similarity=0.009 Sum_probs=63.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCccChhh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC---EDIGPEICNSLLAVLAS---DGYIDNALKMFDEMSHRGVEFSTIG 191 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 191 (556)
+..+...++-+|....+++..+++++.+.... +.-+..+--...-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566667888889999999999887642 11122233344445556 7889999999888666556677788
Q ss_pred HHHHHHHHHhh---------CcHHHHHHHHHHHHh
Q 008727 192 FGVFIWKFCEN---------AKLGQVLSMLDEVRK 217 (556)
Q Consensus 192 ~~~li~~~~~~---------g~~~~a~~~~~~~~~ 217 (556)
|..+...|-.. ..+++|+..|.+.-+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 87776665422 234555555554443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.40 E-value=0.022 Score=39.60 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|.+.+++++|.++++.+.+.+ +.+...|.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666543 334555555566666666666666666666644
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.37 E-value=0.78 Score=41.95 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhCcHH---HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 191 GFGVFIWKFCENAKLG---QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 191 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
++..++.+|...+..+ +|.++++.+... .++...++..-+..+.+.++.+++.+++.+|...- .-....+...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE---YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 3444555555554443 344455555443 33334444444555555777777777777776652 1122334444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 268 AEEF---KLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 268 l~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
+..+ .. .....+...+..+....+.|..
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 4433 22 2234455555555444444433
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.37 E-value=0.068 Score=49.30 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMK----RKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFA----SG-CSGNLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~ 471 (556)
.|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555566666665544321 12211 1234566667777777777777776665432 22 112234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK-----GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+.-+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4456666666667777777766553321 1111344566677777777777777766665443
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.34 E-value=0.98 Score=42.73 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=119.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHH-----HHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHH
Q 008727 298 DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDV-----LNALIGSVSSI-----DPRSAIVFFNFMIEKGRVPTLST 367 (556)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~ 367 (556)
+|..++...++.++...|.+.+..+.-..+.....- -..+.+..+.. +..+-+.+++.....++. ....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQL 378 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQL 378 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHH
Confidence 677777788888888888877776654433322111 11111222221 233444555555444332 1122
Q ss_pred HHHHH---HHHHhcCC-hHHHHHHHHHHHhCCCCccHhhHHHHH----HHHHhc---CCHHHHHHHHHHHHHCCCCCCH-
Q 008727 368 LSNLS---KNLCKRNK-SDELVEVYKVLSANDYFTDMESYNVMV----SFLCTS---GRLREAYGVIQEMKRKGLDPDV- 435 (556)
Q Consensus 368 ~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~a~~~~~~m~~~~~~p~~- 435 (556)
...++ .-+-+.|. -++|.++++.+.+-... |...-|.+. ++|.+. ..+..-+.+-+-+.+.|+.|-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i 457 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI 457 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 22233 22344455 88899999888764322 444444433 233322 2333444444455667776643
Q ss_pred ---hHHHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008727 436 ---SFYNSLMEA--CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510 (556)
Q Consensus 436 ---~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 510 (556)
..-|.|..+ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|.+++..+ +|+..++++
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 233444433 4567899988877666666 6899999999999999999999999999865 567777665
Q ss_pred H
Q 008727 511 L 511 (556)
Q Consensus 511 l 511 (556)
-
T Consensus 531 k 531 (549)
T PF07079_consen 531 K 531 (549)
T ss_pred H
Confidence 3
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.53 Score=41.92 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 205 (556)
.......|++.+|..+|+........ +..+--.+..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556788888888888888776444 56677788888889999999999988876643222222222233444444444
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcC
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~ 275 (556)
.+...+-..... .|++......+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444444444433 4666777777888888889999888877776554 222 4444555555555555
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.28 E-value=0.37 Score=39.02 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
+...|++++|..+|.-+...+.. +..-|..|..+|-..+++++|...|......+ .-|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 45678888888888877765543 55556677777777888888888888776654 34444455567788888888888
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
...|...++.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 8888888763
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.059 Score=47.06 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=63.4
Q ss_pred ccHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 008727 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (556)
-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..- .|.- .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3667777777776543 4566677777888888888888888888887754321 1111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
+....-.|-+ +-+=+++++++|...|+.||..+-..++.++.+.|-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111211 123356677777777777777777777777766664
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.45 Score=40.92 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
-...|..-..+|...+++++|..-+.+..+ +...+...|.+ .+.++.|..+.+++.+. +--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 445666777777778888888776666553 11223322222 23445555555555443 112335566666
Q ss_pred HHHhcCCHhHHHHHHHHH
Q 008727 163 VLASDGYIDNALKMFDEM 180 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m 180 (556)
.|..+|.++.|-..+++.
T Consensus 100 lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhCCcchHHHHHHHH
Confidence 677777776666665554
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=1.8 Score=44.38 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=85.0
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN 172 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (556)
.+.+.|++++|.+.|-+-+.. +.| ..+|.-|....+..+-...++.+.+.|.. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344678888887766554332 122 23455566666677777777777777766 66777788888888888887
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 252 (556)
-.++.+... .|.. ..-....+..+.+.+-.++|..+-...... ..+...+ +-..|++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h-------e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKH-------EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC-------HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 777666554 2321 112334555566666666666555444322 2222222 33457788888887776
Q ss_pred h
Q 008727 253 R 253 (556)
Q Consensus 253 ~ 253 (556)
.
T Consensus 517 p 517 (933)
T KOG2114|consen 517 P 517 (933)
T ss_pred C
Confidence 4
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.20 E-value=0.77 Score=40.14 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=38.0
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH-SPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (556)
...+..+.+..+..+++..|.+-|+.+..+..+.| ...+--.++.++-+.++++.|+..+++....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44455666666666666666666666655544333 2333334445555666666666666666554
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.17 E-value=0.54 Score=38.10 Aligned_cols=89 Identities=10% Similarity=-0.077 Sum_probs=74.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
-+-..|++++|..+|.-+.-.+ ..+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457899999999999998765 456777888889999999999999999998766542 55556678889999999999
Q ss_pred HHHHHHHhhhC
Q 008727 524 AFEVFNKSVNH 534 (556)
Q Consensus 524 a~~~~~~m~~~ 534 (556)
|...|+..+++
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999988773
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.11 E-value=0.86 Score=39.86 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHH
Q 008727 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (556)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (556)
|-...|+..+..+..|++++|.+.|+.+..... +-...+.-.++.++-+.++++.|...+++.....+.....-|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 445567888888888999999999998876542 223556666777888899999999999887775443333345555
Q ss_pred HHHHH
Q 008727 407 VSFLC 411 (556)
Q Consensus 407 i~~~~ 411 (556)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55554
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.07 E-value=0.46 Score=38.13 Aligned_cols=124 Identities=14% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
.++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 444455555666666666666665543 35556666666666543 2333333331 112333344555666666
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
.++++..++.++.. |...+..+... ++++.|.+.+.+- -+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666655555432 12222333333 5555555555441 14445555554443
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.02 Score=40.52 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGN-LKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666665555432 10 111 3455566666666666666666666654
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.01 E-value=1.2 Score=40.72 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=106.9
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHc--------CCCCC-----HHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCC
Q 008727 334 LNALIGSVSSI-DPRSAIVFFNFMIEK--------GRVPT-----LSTLSNLSKNLCKRNKSD---ELVEVYKVLSANDY 396 (556)
Q Consensus 334 ~~~l~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~ 396 (556)
||.....+.++ +++.|...+++..+. ...|+ ..++..++.+|...+..+ +|.++++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 44445555555 555555554443221 12233 245666778888777655 45556666655433
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---hhcCChhhHHHHHHHHHHcCCCCCHH-H
Q 008727 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC---CREDLLRPAKKLWDQMFASGCSGNLK-T 472 (556)
Q Consensus 397 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 472 (556)
. .+.++..-+..+.+.++.+++.+.+.+|...-.- ....+..+++.+ .. .....|...++.+....+.|... .
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHH
Confidence 2 3445555667777788999999999999986321 234455555544 33 33456677777766554555553 1
Q ss_pred HHH-HHH---HHHccCC------HHHHHHHHHHHHHC-CCCCCHhhHHHH-------HHHHHccCCHHHHHHHHHHhh
Q 008727 473 YNI-LIS---KFSEVGE------IEGALRLFHNMLEK-GVAPDATTYTSL-------LEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 473 ~~~-li~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~ 532 (556)
... ++. ...+.++ .+...++++...+. +.+.+..+-.++ ...+.+.+++++|.++++-..
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111 111 1122222 44454555533322 333344443222 234567899999999998543
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.61 Score=41.57 Aligned_cols=149 Identities=9% Similarity=0.060 Sum_probs=102.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
.......+++..|..+|....... +-+......+.+.|...|+.+.|..++..+...-..........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567899999999999988865 4456777888999999999999999999986543222222223345556666666
Q ss_pred hHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHH
Q 008727 171 DNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 244 (556)
.+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.++ .....+......++..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~-d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR-DRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccccCcHHHHHHHHHHHhcCCCCH
Confidence 5555555555442 3 5555566777888999999999888777776 4444445555666666665554333
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.88 E-value=1.6 Score=41.22 Aligned_cols=416 Identities=9% Similarity=0.049 Sum_probs=222.2
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008727 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (556)
++=+.+++. |.|...|-.|+.-+...+..++..++++++..- .+.-..+|..-|.+-...+++.....+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 333444443 678899999999999999999999999999653 33355689888888888899999999999988865
Q ss_pred CccChhhHHHHHHHHHhhCc-------HHHHHHHHHHHHhccCCCCCchhhHHHHHHHH---hccCCH------HHHHHH
Q 008727 185 VEFSTIGFGVFIWKFCENAK-------LGQVLSMLDEVRKRENSMINGSVIAVLIIHGF---CKGKRV------EEAFKV 248 (556)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~------~~A~~~ 248 (556)
. +...|..-+ .|.+.-+ -....+.|+-...-.+..|.....|+..+..+ -..|.| |...+.
T Consensus 107 l--~ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 107 L--NLDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred c--cHhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 345555444 3443311 11223334444333355666666666544332 223334 444555
Q ss_pred HHHHhhCCCCCCHHHHH------HHHHHHH-------hcCCHHHHHHHHHHHHh--cCCCCCh----hhHHH--------
Q 008727 249 LDELRIRECKPDFIAYR------IVAEEFK-------LMGSVFEREVVLKKKRK--LGVAPRT----NDYRE-------- 301 (556)
Q Consensus 249 ~~~m~~~~~~p~~~~~~------~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~----~~~~~-------- 301 (556)
+.++....+.-=...|+ .=+.-.. ..--+..|.+.+++... .|...-. .+++.
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 55555432110001111 1111000 00112344455554433 2332111 11111
Q ss_pred ---HHHHHHh-----cCC-H-HHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008727 302 ---FILGLIV-----ERR-I-CEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (556)
Q Consensus 302 ---ll~~~~~-----~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (556)
+|+--.. .|+ . ....-+++++... +...+.+|--.... ...+|-+.|+.....-... .|+ .-..
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~ 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMF 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hhee
Confidence 1110000 000 0 0011111111111 01111111111111 1234555555554332211 122 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------------CCC---------------CccHhhHHHHHHHHHhcCCHHHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSA--------------NDY---------------FTDMESYNVMVSFLCTSGRLREAYG 421 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~~~~~~a~~ 421 (556)
+-..|.-.++-+.+...|+...+ .+. ..-..+|...+....+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 11222222232222222222110 011 0122356667777777778889999
Q ss_pred HHHHHHHCC-CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 422 VIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY-NILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 422 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|-+..+.| +.+++..+++++..++ .|+...|..+|+.-... -||...| +-.+.-+...++-+.|..+|+..+.+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 999998888 5678888888888765 57888898988876554 3454443 45566777888989999999976654
Q ss_pred CCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 500 GVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 500 g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
+.-+ ...|..+|..=..-|+...+..+-++|.+.=
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 2223 5678888888888999998888888886643
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.13 Score=45.17 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
.|+.-+..+ +.|++..|...|...++.... -....+--|...+...|+++.|...|..+.+..+..+..+....-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566665544 556688888888777765311 11223334667777777777777777777776565565556666677
Q ss_pred HHHhccCCHHHHHHHHHHHhhC
Q 008727 234 HGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
....+.|+.++|...|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.80 E-value=0.63 Score=35.83 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
....+......|.-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.++++++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555554432 45555555555555555555555555555555554
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=2.6 Score=42.63 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 356666777788899999988877765 4788899999999999999887766655443 255577788999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
.+.|+.++|.+++.+.- |.. -...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 99999999999887663 111 56778888898888877654
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.84 Score=36.63 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 381 (556)
++..+...+.......+++.+...+. .+....|.++..+..-+..+.++.+.. ..+......+++.|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 34444444445555555555544432 344445555555444444444444432 12233344455555566666
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
+++..++..+.. +...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666555554422 12222222333 5556665555531 14445555555443
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.70 E-value=0.16 Score=48.35 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV----SFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5668899999999999999999999998886 4553 35888999999999999999999999875
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.34 Score=38.22 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
...+.|++++|.+.|+.+..+....+-...+...++.+|.+.+++++|...+++..+....---..|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4456777888888888877775555555566667888888888888888888887776432222445555555443
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.58 E-value=0.77 Score=45.47 Aligned_cols=162 Identities=16% Similarity=0.087 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcc-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhH
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSAN-DYFTD-----MESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSF 437 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 437 (556)
+..+++...=.|+-+.+.+.+....+. ++.-. .-.|+.++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555567777777777665542 22211 1134444444443 35678899999998886 566655
Q ss_pred HHH-HHHHHhhcCChhhHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 438 YNS-LMEACCREDLLRPAKKLWDQMFASGC---SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 438 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
|.. -.+.+...|++++|.+.|++...... +.....+--+...+...+++++|.+.|.++.+..-- +..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 33456678999999999997664211 122344556677788899999999999999875321 3444444444
Q ss_pred H-HHccCCH-------HHHHHHHHHhh
Q 008727 514 G-LCQETNL-------QAAFEVFNKSV 532 (556)
Q Consensus 514 ~-~~~~g~~-------~~a~~~~~~m~ 532 (556)
+ +...|+. ++|.++|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3567777 88888888763
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=3.3 Score=42.52 Aligned_cols=178 Identities=10% Similarity=0.063 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHH----HHcCCChHHHHHHHHHHHhCCCCCChHhHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS----LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (556)
.....-|..+.+...++-|..+-+ ..+ .+......+... +.+.|++++|..-|-+-... ++| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 345566777888888888876654 333 344444444444 45789999999887765432 122 345
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
+.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... . |...-+ ....+..+.+.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhC
Confidence 66666677777777888888888864 44555678889999999998888877655 2 222111 233456666677
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 77777666544332 23333333 34568888998887654
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.14 Score=48.71 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=71.7
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.+ ...|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 5678999999999999999999999999885 5663 358999999999999999999999999752 12232
Q ss_pred HHHH--HHHccCCHHHHHHHHHHhhhCCC
Q 008727 510 SLLE--GLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 510 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.. .+....+.++..++++...+-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2211 11222344567777777766664
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.44 E-value=0.53 Score=37.17 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHH
Q 008727 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407 (556)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 407 (556)
....|+.....+.+|++++|.+.|+.+...-.. -....-..++.+|.+.++++.|...+++..+.++.-...-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345567777778888888888888888765322 134555667788888888888888888888876654444566666
Q ss_pred HHHHhc
Q 008727 408 SFLCTS 413 (556)
Q Consensus 408 ~~~~~~ 413 (556)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 665543
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.24 E-value=0.36 Score=42.38 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH
Q 008727 81 THSPLSYHSILKSLSL-----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155 (556)
Q Consensus 81 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 155 (556)
.-|-.+|-..+..+.. .+.++-.-..++.|.+-|+.-|..+|+.|++.+-+..-.. ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HH
Confidence 4466677666666643 3455666666788888888888888888887765432211 11
Q ss_pred hHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH-HHHHHHHHHHHh
Q 008727 156 ICNSLLAVLASD-GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL-GQVLSMLDEVRK 217 (556)
Q Consensus 156 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 217 (556)
++- ..+... .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.+
T Consensus 127 vfQ---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQ---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHH---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111 111111 22344677788888888888888877788777766543 344445555544
No 246
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.23 E-value=1.4 Score=36.13 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=68.7
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccC
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
.+..+...+++|+...+..+++.+.+.|++... ..+.+.++-+|.......+-.+. +....+.++=-.|..+-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-
Confidence 344445566667777777777777777765443 33444555555555444332222 22222333322222220
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 89 -----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 -----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 113344666777777777777777664322 222334566666666665555555554444
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.09 E-value=1.2 Score=34.43 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhh---HHHHHHHHHhhCcH
Q 008727 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG---FGVFIWKFCENAKL 205 (556)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~ 205 (556)
+.-.|..++..++..+...+. +..-+|-+|--....-+-+-..+.++.+-+ ..|... .-.++..|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch
Confidence 344577777777777766532 555666666665555555555555555433 112211 11223333322211
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
.......++.....|+-+.-.+++.++.+ +-+++....-.+..+|.+.|+..++.++++
T Consensus 86 --------------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 86 --------------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 22334456666777777777777777664 235566667777777777787777777777
Q ss_pred HHHhcCCC
Q 008727 286 KKRKLGVA 293 (556)
Q Consensus 286 ~~~~~~~~ 293 (556)
+.-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 77776653
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.08 E-value=2.5 Score=41.96 Aligned_cols=179 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH------hHHHHHHHHHh----cCCHhHH
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE------ICNSLLAVLAS----DGYIDNA 173 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~a 173 (556)
.-+|.-+... +|| ....+++...=.||-+.+++.+....+.+--..+. .|+..+..+.. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3456666553 222 34566777777788888888888776533111222 34455544443 4568889
Q ss_pred HHHHHHHHhCCCccChhhHHHHH-HHHHhhCcHHHHHHHHHHHHhcc-CCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 174 LKMFDEMSHRGVEFSTIGFGVFI-WKFCENAKLGQVLSMLDEVRKRE-NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
.++++.+.+. -|+...|...- +.+...|++++|++.|+...... ....-....+.-+...+.-.++|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999886 46766665433 44556799999999999755321 11112234455677888889999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 008727 252 LRIRECKPDFIAYRIVAEEF-KLMGSV-------FEREVVLKKKRK 289 (556)
Q Consensus 252 m~~~~~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 289 (556)
+.+.+ .-+...|.-+..+| ...|+. ++|.++|++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98763 22445555555443 456777 888889887644
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.99 E-value=2.7 Score=40.60 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASG-CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEGLC 516 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~ 516 (556)
.-+..++-+.|+.++|.+.+.+|.+.. ..-+......|+.++...+.+.++..++.+..+.... .-..+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555667788888888888887642 1123446667888888888888888888887543221 12334555443333
Q ss_pred ccCC---------------HHHHHHHHHHhhhCCCcccHHH
Q 008727 517 QETN---------------LQAAFEVFNKSVNHDVMLARSI 542 (556)
Q Consensus 517 ~~g~---------------~~~a~~~~~~m~~~~~~~~~~~ 542 (556)
..|+ -..|.+.+.+.++.|+.+..-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 2322 1346677888888776655443
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=0.82 Score=40.36 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--ccHhhHHHHHH
Q 008727 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF--TDMESYNVMVS 408 (556)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 408 (556)
.|+..+..+..|++..|...|...++..... ....+-.|..++...|+++.|..+|..+.+.-++ --+...--+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5777777777777777777777776654221 1233444556666666666666666665543221 11234444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 008727 409 FLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~ 429 (556)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666666554
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=94.93 E-value=1.7 Score=41.73 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHh-CCCCcc-HhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc
Q 008727 380 KSDELVEVYKVLSA-NDYFTD-MESYNVMVSFLCTS---------GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (556)
Q Consensus 380 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 448 (556)
..+.|..+|.+... ....|+ ...|..+..++... ....+|.++.+...+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45678888888772 223343 33444444443321 2455677777788877654 788888888888888
Q ss_pred CChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a 524 (556)
++++.|...|++.... .|| ..+|........-.|+.++|.+.+++..+. .|. .......+..|+..+ .+.|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 8899999999999885 455 455666666677789999999999997754 343 333344444666655 4677
Q ss_pred HHHHHHh
Q 008727 525 FEVFNKS 531 (556)
Q Consensus 525 ~~~~~~m 531 (556)
+.++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 7776543
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.91 E-value=0.56 Score=45.72 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
..+.+++-+-+.|.++.|.++...- ..-.+...+.|+++.|.++.++.. +...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 3455555555555555555443321 111334445555555555433321 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+...
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554322 2233334444555544444444443
No 253
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=1.2 Score=41.66 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=69.1
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCC---------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 008727 374 NLCKRNKSDELVEVYKVLSAN-----DYF---------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 439 (556)
.|.+.|++..|..-|++.... +.. .-..+++.+.-+|.+.+++.+|++.-....+.+. +|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 466777777777777664431 111 0122455666666777777777777776666543 2555555
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCH-HHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEI-EGALRLFHNMLE 498 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~-~~A~~~~~~m~~ 498 (556)
--..+|...|+++.|+..|+.+++. .|+-. .-+.|+..--+.... +...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666677777777777777777764 34333 333333333333333 233566666654
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.63 E-value=7.9 Score=41.73 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCC
Q 008727 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT--YNILISKFSEVGE 485 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 485 (556)
..+.....+++|--.|+..-+ ....+.+|..+|+|.+|+.+..++.. ..|... -..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445566666555543321 12345666777777777777766652 222222 2567777778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 486 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+-+|-++..+..+. ....+..|++...+++|.++....
T Consensus 1015 h~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 88888888777643 112233445555556666555443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.52 E-value=0.57 Score=35.92 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
.+..|+.+.|++.|.+....-.+ ....||.-..++--.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443222 344555555555555555555555555544
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=1.2 Score=41.60 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=89.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCC---------CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 008727 408 SFLCTSGRLREAYGVIQEMKRK-----GLD---------PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~-----~~~---------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (556)
..|.+.|++..|..-|++.... +.. .-..++..+.-+|.+.+++.+|++.-+..+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4567888888888887775432 111 123567888889999999999999999999887 7788777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCH-HHHHHHHHHhhh
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT-SLLEGLCQETNL-QAAFEVFNKSVN 533 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~-~~a~~~~~~m~~ 533 (556)
---..+|...|+++.|...|+++++. .|+...-. .++..-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788999999999999999999965 56554444 444433444433 445788888854
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=1.4 Score=43.03 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=56.2
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
...-.|+++.+.++.+.-.-. +..+....+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 344456666665555411100 01124446666666666666666665533211 11223445555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
|.++.++. ++...|..|.+...++|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+..
T Consensus 337 A~~~a~~~--------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 337 ALEIAKEL--------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHCCCC--------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhc--------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 55544322 2244555566666666666666666555431 233333444455554444444443
Q ss_pred Hh
Q 008727 288 RK 289 (556)
Q Consensus 288 ~~ 289 (556)
..
T Consensus 400 ~~ 401 (443)
T PF04053_consen 400 EE 401 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 258
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.39 E-value=4.4 Score=37.81 Aligned_cols=309 Identities=10% Similarity=0.037 Sum_probs=180.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH--HcCCChHHH
Q 008727 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL--SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKA 138 (556)
Q Consensus 63 ~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a 138 (556)
.|..+-+.|+...++.| |..|-.++.. .|+-..|.++-.+..+. +..|......|+.+- .-.|+++.|
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 35567777877655544 5666666543 67888887776654331 234555555555543 346899999
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHH----HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 139 FSVFNEVKFNCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
.+-|+.|.. |+++--.=++ .--+.|..+.|...-++..+.-. --...+..++...|..|+|+.|+++++.
T Consensus 140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999975 4444333333 33466888888888777765432 2335677788889999999999999988
Q ss_pred HHhccCCCCCchhh--HHHHHHHHh---ccCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 215 VRKRENSMINGSVI--AVLIIHGFC---KGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 215 ~~~~~~~~~~~~~~--~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
-... .....+..- -..|+.+-. -..+...|...-.+..+ +.||...- ..-..++.+.|+..++-.+++.+-
T Consensus 214 ~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 214 QRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 7755 222222111 112222211 12245555555444443 35555432 233456788899999999998888
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008727 289 KLGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367 (556)
Q Consensus 289 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (556)
+....|+. ..+....+.|+..... +-...+.......-...+...-.++..|++..|..--+..... .|....
T Consensus 291 K~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~ 364 (531)
T COG3898 291 KAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESA 364 (531)
T ss_pred hcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhH
Confidence 76555543 2233344555533221 1112222222222233344444556677777766655555443 466677
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHhC
Q 008727 368 LSNLSKNLCK-RNKSDELVEVYKVLSAN 394 (556)
Q Consensus 368 ~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 394 (556)
|..|.+.-.. .|+-.++...+-+..+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7776665544 48999999888887765
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.38 E-value=5.1 Score=38.82 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
.+...+-+.|+.++|++.++++.+. ....+...+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555668888888888877765 21223344566678888888888888888777543
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.22 E-value=3.5 Score=39.66 Aligned_cols=111 Identities=10% Similarity=0.048 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+|.+..+...+.+.. |+.+...+..+..-.++++.|..+|++....+. ....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444444443322 444444444444444445555555554444321 112233333333344455555555555544
Q ss_pred hccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
+. ........+....++.|+.. .+++|.++|-+
T Consensus 400 rL-sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 400 QL-EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred cc-CchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33 11111122222233344433 34556665543
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.21 E-value=0.17 Score=30.85 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=10.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
.+...|.+.|++++|+++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.13 E-value=2.1 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhhcC
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDV---SFYNSLMEACCRED 449 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~ll~~~~~~~ 449 (556)
+....|+++.|++.|.+....-+. ....||.-.+++--.|+.++|+.-+++..+. |.+ .. ..|.--...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467889999999999998876544 7779999999999999999999999888764 322 22 23444445567789
Q ss_pred ChhhHHHHHHHHHHcC
Q 008727 450 LLRPAKKLWDQMFASG 465 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~ 465 (556)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999998888776
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=2.7 Score=34.30 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-hHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDS-SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSL 160 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 160 (556)
+...|..-++ +++.+..++|..-|..+.+.|...-+ -..-.......+.|+...|+..|+++-.-...|-+. -..-|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4444544333 35667778888888888777643222 222233444567788888888888876543322221 11111
Q ss_pred --HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 161 --LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 161 --i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
.-.+..+|.++......+-+...+-+.-...-..|--+..+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456777777766666655443333344445555556667777777777766654
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.95 E-value=2.9 Score=34.11 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=50.6
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHH--HHHhcCC
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-AYRIVAE--EFKLMGS 276 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~~~ 276 (556)
.+.++.++|+.-|..+.+. |.........-.+.......|+...|...|++.-.....|-.. -..-|=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3444445555555555443 2221112222223333445556666666666655443233222 1111111 1234455
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
++......+.+-..+-......-..|--+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555544444433322222222222333344455555555555555443
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.90 E-value=0.64 Score=41.65 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555555544332 44455555555555555555555555444
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.86 E-value=3.1 Score=34.15 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc-
Q 008727 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS- 464 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 464 (556)
++++.+.+.++.|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 3445555666666777777777777777765443 333444445555444433332222 222333333333321
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+ ..+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12455666777777777777777664321 222334456666666665544444444333
No 267
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.83 E-value=2.5 Score=37.90 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHc-CC-ChHHHHHHH
Q 008727 66 LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQ-GK-NTQKAFSVF 142 (556)
Q Consensus 66 ~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~ 142 (556)
.-+.|++-...+........ |..++. +...+.+|.++|+.... ..+-.|..+...+++.... .+ ....--++.
T Consensus 114 Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 114 DLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Confidence 44555555444433333322 333221 23344555555553222 2234456666666666554 22 222222333
Q ss_pred HHHH-hCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 143 NEVK-FNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
+-+. ..+..++..+....+..+++.+++..-.++++..... +..-|...|...|+.....||..-..++.++
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3332 2234556666667777777777777777776665554 4455666677777777777776666666554
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=2.1 Score=38.87 Aligned_cols=154 Identities=9% Similarity=-0.030 Sum_probs=88.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh----hHHHHHHHHHhcCCH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME----SYNVMVSFLCTSGRL 416 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~ 416 (556)
+.+|+..+|-..++++++. .+.|...+...-.+|.-.|+.+.-...++++... ..+|.. +-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567777777777777654 3345555666666777777777777777666543 112222 222333344567777
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGALRLF 493 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (556)
++|++.-++..+.+. .|.-.-.++.+.+-..|+..++.++..+-... +--.-.+.|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 777777777666543 25556666667777777777777766554322 10011222333333445567777777777
Q ss_pred HHHH
Q 008727 494 HNML 497 (556)
Q Consensus 494 ~~m~ 497 (556)
++=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.64 E-value=0.9 Score=40.77 Aligned_cols=79 Identities=8% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCccChhhHH
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH-----RGVEFSTIGFG 193 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 193 (556)
..++..+++.+...|+.+.+.+.++.+....+- +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456677777777778888888877777766433 677788888888888888888777777654 56777777666
Q ss_pred HHHHH
Q 008727 194 VFIWK 198 (556)
Q Consensus 194 ~li~~ 198 (556)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.61 E-value=5.8 Score=36.46 Aligned_cols=129 Identities=11% Similarity=0.192 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCC---ccChhhHHHHHHHHHhhCcH
Q 008727 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DG----YIDNALKMFDEMSHRGV---EFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 205 (556)
+++...+++.+.+.|..-+..+|-+..-.... .. ....|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666667777666555554442222222 11 24567777777777542 2344455554422 22222
Q ss_pred ----HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCCCHHHHHH
Q 008727 206 ----GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR---VEEAFKVLDELRIRECKPDFIAYRI 266 (556)
Q Consensus 206 ----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~ 266 (556)
+.++.+|+.+... |....+..-+.+-+-++..... ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3344444444443 4444333323222222222111 2244455555555555544444433
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.51 E-value=2.7 Score=34.00 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=24.4
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
+.++.+.+..+++.+.-. .|.....-..-...+...|+|.+|.++|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334555555555555433 2222222222233445556666666666665544
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.31 E-value=7.7 Score=39.56 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHcCC
Q 008727 312 ICEAKELGEVIVSGK 326 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~ 326 (556)
...+.+.++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 445556665555543
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.19 E-value=2.9 Score=35.10 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+.....+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667788888888888888888888776433332 34566777777788888877777665543
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.17 E-value=0.34 Score=29.46 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
|..+...|.+.|++++|+++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.55 E-value=6 Score=33.72 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
-|.-=|.+.....++ -+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-|...-
T Consensus 83 LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 83 LARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHH
Confidence 333334444333222 45688888888888899999999888888876443333333333 3345688888887777776
Q ss_pred hccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 008727 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-- 293 (556)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 293 (556)
+.+.. .|-...|--++. ..-+..+|..-+. +..+. |..-|...|-.+.- |++. ...+++.+......
T Consensus 161 Q~D~~-DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 161 QDDPN-DPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT 230 (297)
T ss_pred hcCCC-ChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence 65122 221233322222 2335555554433 22222 44445443333221 1111 11122222221110
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 294 ----PRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 294 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
.=+.||--+.+-+...|+.++|..+|+..+..
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01125556666777778888888877766543
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.54 E-value=8.7 Score=35.55 Aligned_cols=96 Identities=4% Similarity=-0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-----CCCCHHHH
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRENSMING--SVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-----CKPDFIAY 264 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~ 264 (556)
|..+.+++-+.-++.+++.+-..-....|..+.. ......+..++...+.++.+++.|+...+-. .-.....|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 3334444444445555555544444443333311 1222345555666666777777776654321 11122456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008727 265 RIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 265 ~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
..|-+.|.+..++++|.-+..+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhH
Confidence 66667777777777776555443
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=15 Score=37.71 Aligned_cols=153 Identities=11% Similarity=0.091 Sum_probs=81.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITL---DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (556)
++-+.+.+.+++|+++.+..... .+ ........|..+.-.|++++|-...-.|... +...|..-+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55566777777777766543332 23 3456677777778888888887777777544 556666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH--------------HHhccCCCCCchhhHHHHH
Q 008727 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE--------------VRKRENSMINGSVIAVLII 233 (556)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~~li 233 (556)
++.... +.-++......+...|..++-.+.. .+...-.++... ...+......+......|+
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 554432 2223333233345556655555544 221111111111 0000000011122233477
Q ss_pred HHHhccCCHHHHHHHHHHHh
Q 008727 234 HGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~ 253 (556)
..|...+++..|++++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77888888888888777665
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=10 Score=34.75 Aligned_cols=152 Identities=7% Similarity=-0.090 Sum_probs=92.1
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh--hhH--HHHHHHHHhhCcH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST--IGF--GVFIWKFCENAKL 205 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~--~~li~~~~~~g~~ 205 (556)
.-.|+..+|-..++++.+.- +-|.-+++.-=++|.-.|+.+.-...++++... -.+|. .+| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34577777777788887653 337777887788888888888888888877653 11232 222 2223334466888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC---KPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
++|++.-++..+. .+.+.....++...+-..|+..++.+...+-...-- -.-.+.|=...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqi---N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQI---NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccC---CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888877777655 455555556677777777888888777655332100 0011112222233445567777777
Q ss_pred HHHH
Q 008727 283 VLKK 286 (556)
Q Consensus 283 ~~~~ 286 (556)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 7754
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.81 E-value=10 Score=34.85 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=79.8
Q ss_pred HhHHHHHHHHHHhCCCccChhhHHHHHHHHHh--h----CcHHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHhccCC-
Q 008727 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE--N----AKLGQVLSMLDEVRKRENSMIN-GSVIAVLIIHGFCKGKR- 241 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~- 241 (556)
+++...+++.|.+.|..-+..+|.+..-.... . ....++..+++.|++....... +...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678889999999988888777664433322 2 3456788899999877333222 22233333322 3333
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 008727 242 ---VEEAFKVLDELRIRECKPDFI--AYRIVAEEFKLMGS--VFEREVVLKKKRKLGVAPRTNDYREFIL 304 (556)
Q Consensus 242 ---~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 304 (556)
.+.++.+|+.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356777888888877655332 33333333322222 4467788888888888887777655443
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.76 E-value=0.18 Score=29.10 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=10.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 008727 473 YNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.57 E-value=0.48 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=19.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888854
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.36 E-value=9.2 Score=33.34 Aligned_cols=168 Identities=19% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS-FLCTSGRLREAYGVIQEMKRKGL--DPDVSFYNSL 441 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 441 (556)
...+......+...+++..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 3444444555555666666666666666543332 112222222 56667777777777777644211 1123333334
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQET 519 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 519 (556)
...+...++.+.+...+....+.. .. ....+..+...+...++.+.|...+...... .|+ ...+..+...+...|
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcC
Confidence 444556677777777777777642 22 3566666777777777777777777777654 232 333444444444556
Q ss_pred CHHHHHHHHHHhhhCCC
Q 008727 520 NLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 520 ~~~~a~~~~~~m~~~~~ 536 (556)
..+++...+.+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 251 RYEEALEALEKALELDP 267 (291)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 67777777777665554
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.12 E-value=26 Score=38.11 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 258 KPDFIAYRIVAEE----FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 258 ~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
+|+...+.....+ +...+.+++|.-.|+..-+ ....+.+|..+|++.+|..+..++.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 4555554444433 3445666666555554322 1234556666777777766655543
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.87 E-value=5.8 Score=33.29 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+..+...|.+.|+.+.|.+.|..+.+....+ -...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666666666666666665543322 22345555666666666666655555543
No 285
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=90.68 E-value=16 Score=34.91 Aligned_cols=371 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 201 (556)
.+-++..|...|+..+|.+..+.+.. +.......-+++...+.-..|..+.-.+...+...+...-+.+.+++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred hC--------cHHHHHHHHHHHHhccCCCCCchhhH-HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008727 202 NA--------KLGQVLSMLDEVRKRENSMINGSVIA-VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272 (556)
Q Consensus 202 ~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 272 (556)
.+ +...|...|+.+..+ .+...... +.+-..-...|+.+. .+.|++ +...+|+-|.
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~K---a~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYF 356 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPK---APSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYF 356 (645)
T ss_pred hccccccccccCcchhhhhhhhccc---CCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcC-----Ch
Q 008727 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFIL-GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-----DP 346 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 346 (556)
..|+..+..+.++.+-.- ..++.....+|. ++-+.++-.+...+|-.-+....-+...+-+.....+... +.
T Consensus 357 lsgDt~Evi~~L~DLn~~--E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 357 LSGDTPEVIRSLRDLNLP--EYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred hcCChHHHHHHHHHcCCc--cccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------------hCCCCccHhhHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS---------------------ANDYFTDMESYNV 405 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~~~~~~~~~~~~~ 405 (556)
..|-+.+..++..-+..+.-.-..+=....+..-...+.+.++... ...+.--..-...
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~ 514 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDM 514 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG- 484 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 484 (556)
++.-|...|+..+|.+.++++----+. ....+.+++.+.-+.++-...+.+++..-+.|+ .|-+.|-.+|.+-.
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhhhc
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 485 -------EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 485 -------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
++..|.+.|+...+.+.. +...|..|-.-|-..++
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEECFQ-NGIISKQLRDLCPSRLR 631 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHHHH-cCchhHHhhhcchhhhc
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.42 E-value=23 Score=36.25 Aligned_cols=180 Identities=10% Similarity=0.043 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhHhCCCCCCHHhHHHHHHH-----HHcCCChHHHHHHHHHHHh-------CCCCCChHhHHHHHHHHHhc
Q 008727 100 INAIDSVLKQVKVNKITLDSSVYRFIIPS-----LIQGKNTQKAFSVFNEVKF-------NCEDIGPEICNSLLAVLASD 167 (556)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 167 (556)
...+.++++...+.| +......+... +....|.+.|+..|+...+ .| .+...+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888888777 23332222222 3456788899999888866 44 344666677777664
Q ss_pred C-----CHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh-hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH--HHhcc
Q 008727 168 G-----YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE-NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH--GFCKG 239 (556)
Q Consensus 168 g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~ 239 (556)
. +.+.|..+|....+.|. |+...+...+..... ..+...|.++|...... |... ...+..++. +..-.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH--HHHHHHHHHHhCCCcC
Confidence 3 56678888888877763 444433332222222 24567888888888766 3322 122211111 11233
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG 291 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 291 (556)
.+.+.|..++.+..++| .|...--...+..+.. ++.+.+...+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46777888888777776 3332222222333333 55555555555554443
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.33 E-value=0.011 Score=47.82 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=22.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (556)
++.+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..+.++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444444444444444444443333334444444444444444444444333
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.09 E-value=22 Score=35.50 Aligned_cols=376 Identities=10% Similarity=0.011 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH-cCCChHHHHHHHHHHHhC-CCC-CChHhHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI-QGKNTQKAFSVFNEVKFN-CED-IGPEICNSLLA 162 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~ 162 (556)
-|......=.+.|..+.+..+|++-.. +++.+...|...+..+. ..|+.+...+.|+..... |.. .+...|...|.
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 455555555677888888888888776 46667777766655544 456777777777777553 221 13446777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh---h------CcHHHHHHHHHHHHhc--cCCCCCchhhHHH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE---N------AKLGQVLSMLDEVRKR--ENSMINGSVIAVL 231 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 231 (556)
.-...+++.....+|+++++... .-|+.....|.+ . ...+++.++-.....+ .+...........
T Consensus 160 ~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 77777888888888888876421 222222222211 1 1222222222222210 0000000000000
Q ss_pred HHHHH-hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----ChhhHHHHH
Q 008727 232 IIHGF-CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL---GVAP----RTNDYREFI 303 (556)
Q Consensus 232 li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~ll 303 (556)
-+..- ...+..+++.....+.. ...-..+...-...+....++.-.+. .++| +..+|...+
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 00000 00111111111111000 00001111122222233333333222 1222 334566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 008727 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV--PTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~ 381 (556)
.--...|+.+.+.-+++...-..-.-+....+-+...-..|+.+-|..++....+-..+ |....+.+.+ .-..|++
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~ 382 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNF 382 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccH
Confidence 66677788877777777665432222333333333333346666666555444333322 2222222222 2335688
Q ss_pred HHHHHHHHHHHhCCCCccHh-hHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHHHHH-----HhhcCChh
Q 008727 382 DELVEVYKVLSANDYFTDME-SYNVMVSFLCTSGRLREAY---GVIQEMKRKGLDPDVSFYNSLMEA-----CCREDLLR 452 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~---~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~ 452 (556)
+.|..+++.+.+.- |+.. .-..-+....+.|..+.+. +++........ +..+...+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHH
Confidence 88888888887753 3332 2222233345567777666 33333222211 22222222222 22356788
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.|..++.++.+. ++++...|..++......+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 888888888876 3666777777777666555
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=11 Score=34.26 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=53.2
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhH
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC---EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF 192 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 192 (556)
+.+..+-..++..-....+.+.++..+-++.... ..++. +-.+.++.+.+ -++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 3334444444444444555666665555553221 01111 11122222222 2455666666666677777777777
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+.+|+.+.+.+++..|.++...+..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777666666554
No 290
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.57 E-value=22 Score=34.78 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.|-...-+++..++......-++.+..+|..-| .+.-.|..++..|... .-++-..+|+.+.+.... |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455566788999999999999999999999876 5778889999999988 667788889988887665 556666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCcc-----ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEF-----STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (556)
..|-+ ++.+.+...|.....+=++- -...|..+.. .-..+.+....+...+....|.. .....+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-RGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHh
Confidence 66666 88888888888876542210 1123444432 11467777788887777663333 3356666677888
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008727 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEF 271 (556)
Q Consensus 237 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 271 (556)
....++++|++++..+.+..-+ |...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8999999999999987766422 555544555443
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=2.6 Score=37.99 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+.++++.++..=...|+.||-.+++.+|+.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555554444443
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.27 E-value=9.8 Score=30.38 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=25.4
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
.++.+.+..+++.+.-. .|.....-..-...+...|+|++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555533 2222222222233445566666666666666554
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.21 E-value=0.28 Score=39.62 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (556)
+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666677777666554445666677777777776666666665511 11222345556666666
Q ss_pred HHHHHHHHHHH
Q 008727 486 IEGALRLFHNM 496 (556)
Q Consensus 486 ~~~A~~~~~~m 496 (556)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
No 294
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.20 E-value=16 Score=32.88 Aligned_cols=136 Identities=9% Similarity=0.130 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhh-cC-ChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 415 RLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCR-ED-LLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 415 ~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
.+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666652221 1233356666666666654 22 233334444444433 34677778888888889999999888
Q ss_pred HHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHH-----hhhCCCcccHHHHHHHHHHH
Q 008727 491 RLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNK-----SVNHDVMLARSILSTFMISL 550 (556)
Q Consensus 491 ~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~l~~~~ 550 (556)
++|+.-... +..-|...|..+|+.....|+..-...+.++ +.+.++..++.+-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888887655 5566888889999988899988877777775 35666766666666554443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.16 E-value=0.55 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHH
Q 008727 469 NLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~ 490 (556)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.08 E-value=3.3 Score=30.02 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
+.-++++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555556666666666666667777777777777777777766653
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.02 E-value=31 Score=35.80 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=12.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCC
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p 503 (556)
+...|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 45677888887666665 5666
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.00 E-value=3.3 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+.+-++.+....+.|++....+.+.+|-+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.82 E-value=7.6 Score=28.55 Aligned_cols=47 Identities=2% Similarity=0.022 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+..+-++.+...++.|+.....+.+++|-+.+|+..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777777777777777765
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.63 E-value=0.53 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=17.2
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHH
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5666667777777777777777664
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.51 E-value=1 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=12.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|..+..+|...|++++|+..|++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444455555555555555555544
No 302
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.14 E-value=1.2 Score=27.09 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 511 LLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
+..+|...|+.+.|.+++++.+..+-.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4455556666666666666555544333
No 303
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.89 E-value=23 Score=32.95 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHhHHH
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSAN-----DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR----KGLDPDVSFYN 439 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~ 439 (556)
.++-.++...+.++++.+.|+...+. +......++..+-..|.+..++++|.-+..+..+ .++.--..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555566666666666666655431 1111233566666666666666666655554332 12221111222
Q ss_pred H-----HHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 440 S-----LMEACCREDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 440 ~-----ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
. +.-++-..|....|.+.-++..+. |-.+ .....-.+.+.|-..|+.+.|+.-|+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 222344555555555555554432 2111 12223344555556666666555555544
No 304
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.84 E-value=31 Score=34.44 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
-+...|..++.---...+.+.+..++..+...- |.----|......=.+.|..+.+.++|+..... ++.+...|....
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 455667777776666666777788888877653 223334555555556788899999999988653 556777777766
Q ss_pred HHHHh-cCCHhHHHHHHHHHHhC-CCc-cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 162 AVLAS-DGYIDNALKMFDEMSHR-GVE-FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 162 ~~~~~-~g~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
..+.. .|+.+...+.|+..... |.. .+...|...|.--...+++.....+++.+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65554 47777778888877663 322 13345555665555667777777777777654
No 305
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.77 E-value=20 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 008727 303 ILGLIVERRICEAKELG 319 (556)
Q Consensus 303 l~~~~~~~~~~~a~~~~ 319 (556)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34444556655544444
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.59 E-value=16 Score=30.77 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=41.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNV-----MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
..+...|++++|...++..... |....+.. +.+.....|.+|+|+..++.....+.. ......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3455566666666666554432 11112222 223444556666666666554443221 1222333445555
Q ss_pred cCChhhHHHHHHHHHHc
Q 008727 448 EDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~ 464 (556)
.|+-++|+.-|+.....
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 56666666666555554
No 307
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.52 E-value=19 Score=31.54 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 008727 332 DVLNALIGSVSSIDPRSAIVFF 353 (556)
Q Consensus 332 ~~~~~l~~~~~~~~~~~a~~~~ 353 (556)
.+...|+.+|..||.+++.+++
T Consensus 229 r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 229 RSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhccCCHHHHHHHH
Confidence 3444555555555555544443
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.46 E-value=16 Score=30.72 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-----HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH-
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-----LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI- 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 475 (556)
.|..++.... .+.. +.....+.+.... ...+|.. +...+...+++++|..-++..... |.-..+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 4444444433 2333 4455555665542 2333432 334567888999999888877753 22223333
Q ss_pred ----HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 476 ----LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 476 ----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|.......|.+++|+..++...+.++. ......-...+...|+-++|+.-|++..+.+.
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 445677889999999999888765443 22334445678889999999999999888863
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.35 E-value=14 Score=30.00 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=60.4
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 402 SYNVMVSFL---CTSGRLREAYGVIQEMKRKGLDPDVSFYN-SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 402 ~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
+.+.||... .+.++.+++..++..+.-. +|...... .-...+...|++.+|.++|+++.+. .|....-..|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 444454433 4567888888888888765 44433222 2233456778888888888887664 24333334444
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..|....+-..=...-+++.+.+-.|+.. .+++.+....+...|.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 44433322222222333344443333222 34455544444444433
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.07 E-value=7.6 Score=32.65 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 409 FLCTSGRLREAYGVIQEMKRKGLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
-+.+.|++++|..-|...++.-.... ...|..-..++.+.+.++.|+.--...++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 36678888888888888877622111 2345555667778888888888777777654 222333333455777888
Q ss_pred CHHHHHHHHHHHHHC
Q 008727 485 EIEGALRLFHNMLEK 499 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~ 499 (556)
.+++|++-|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888888865
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.06 E-value=1.4 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
|..+...+.+.|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444555555555555555444
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.96 E-value=4.8 Score=29.56 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
+.++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666667777777777777777766654
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.83 E-value=6.4 Score=33.29 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+.|.+.|-.+...+.--++.....|..-|. ..+.+++..++.+..+. +-.+|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555543344444444443333 44566666666665543 2245566666666666666666655
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.46 E-value=42 Score=34.50 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 517 QETNLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
+.|+..+|.+.+-.+++.+..|..-...
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp ----------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 4577888888777777777666544433
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.39 E-value=21 Score=30.94 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=96.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CccHhhHHHHHHHHHhcCCHHHHH
Q 008727 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSK-NLCKRNKSDELVEVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
++...+.+.+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 345555555555554333321 11111112 57788888888888888755321 112333444444466778888999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..+..............+..+...+...++.+.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888877632213567777788888888889999998888875 333 444555555555777788898888888765
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.24 E-value=2 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666654
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.80 E-value=48 Score=34.51 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=93.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHHHHH--HHhcCChHHHHHHHH--------HHHhCCCCccHhhHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRV-PT-----LSTLSNLSKN--LCKRNKSDELVEVYK--------VLSANDYFTDMESYN 404 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~ll~~--~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 404 (556)
+..+++..|...+..+.+.... |+ ...+...+.+ +...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4467888898888888754321 11 1222222222 345799999999997 444555554444443
Q ss_pred HH----HHHHHhcCCHHH--HHHHHHHHHHC---CCCCCHhHH-HHHHHHHhhcCC--hhhHHHHHHHHHHc---CCCCC
Q 008727 405 VM----VSFLCTSGRLRE--AYGVIQEMKRK---GLDPDVSFY-NSLMEACCREDL--LRPAKKLWDQMFAS---GCSGN 469 (556)
Q Consensus 405 ~l----i~~~~~~~~~~~--a~~~~~~m~~~---~~~p~~~~~-~~ll~~~~~~~~--~~~a~~~~~~~~~~---~~~~~ 469 (556)
.+ |.-+......++ +.++++.+... ....+..++ ..++.++..... ..++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 111112222333 66666655442 111223333 333444432222 12444433332221 11111
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-C--CHhhHHHH-----HHHHHccCCHHHHHHHHHHhh
Q 008727 470 ---LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-P--DATTYTSL-----LEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 470 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--~~~~~~~l-----~~~~~~~g~~~~a~~~~~~m~ 532 (556)
..+++.+...+. .|+..+..+.........-+ | ....|..+ ...+...|+.++|.+...+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 223343444444 78887766665554332111 2 33445333 334677899999998887654
No 318
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.08 E-value=2.8 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+|..+...|...|++++|+..|++.++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4577788888888899999988888877654
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.83 E-value=28 Score=30.93 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CccHhhHHHHHHHHHhcCCH
Q 008727 345 DPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN---DY--FTDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~ 416 (556)
.+++|+.-|++..+....-. ......++....+.|++++..+.+.++... .+ .-+..+.|+++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45556655555544322111 223344556666667777666666655421 00 11333556666555544444
Q ss_pred HHHHHHHHHHHH----C-CCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC----CC-------CHHHHHHHHHHH
Q 008727 417 REAYGVIQEMKR----K-GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC----SG-------NLKTYNILISKF 480 (556)
Q Consensus 417 ~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-------~~~~~~~li~~~ 480 (556)
+-..++++.-.+ . +-+.-..|-+.|...|...+++.+..++++++..+-- .. -...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 444443332111 1 0011112334455556666666666666666543310 11 134455556666
Q ss_pred HccCCHHHHHHHHHHHHH
Q 008727 481 SEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~ 498 (556)
..+.+-.+-..++++.+.
T Consensus 202 T~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhcccHHHHHHHHHHHH
Confidence 666666666666665543
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.54 E-value=9.1 Score=32.42 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS---GCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
+.|.+.|-++...+.--++.....|...|. ..|.+++..++-+..+. +-.+|+..+.+|++.|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555544434444444444443 45566666666665543 22456666666777776666666653
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.09 E-value=10 Score=32.50 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+.+.+.+..++++.+.++-.+.. +.|..+-..+++.+|-.|+|++|...++-.-
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 33444444444444444433332 1133333344444444444444444444433
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.86 E-value=2.7 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666554
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.79 E-value=3.2 Score=23.05 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=17.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666667777777766666543
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.73 E-value=9.5 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCChHhHHHHHHH
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE--DIGPEICNSLLAV 163 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~ 163 (556)
.+..++.+.+.+...+++...++-.+.. |.+......++..++-.|++++|..-++....... .+....|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566666777777777666655544 44556666677777777777777766665544322 2233455555553
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.24 E-value=42 Score=31.82 Aligned_cols=66 Identities=6% Similarity=0.045 Sum_probs=47.9
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP---DVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
...+|..+...+.+.|.++.|...+..+...+... ++.....-....-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45578888888899999999999998888754221 2333444455666778889999988888873
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.86 E-value=30 Score=29.76 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=93.5
Q ss_pred CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHH
Q 008727 292 VAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLS 369 (556)
Q Consensus 292 ~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 369 (556)
+.|+.. .||-+---+...|+++.|.+.|+...+..+..+-...|..+..|-.|+++-|.+-|...-+.+.. |-...|.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 445443 56666667778899999999999999988888888888888888889999888877777665533 2122222
Q ss_pred HHHHHHHhcCChHHHHHHH-HHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HhHHHHH
Q 008727 370 NLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-------VSFYNSL 441 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~l 441 (556)
-+. -..-++.+|..-+ ++.... |..-|...|..|.- |++. ...+++++... -.-+ ..||..+
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 221 1223444444333 333332 44455444443322 1111 11223333221 1111 2456666
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 008727 442 MEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
..-+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66666667777777666666543
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.33 E-value=51 Score=32.06 Aligned_cols=133 Identities=6% Similarity=-0.141 Sum_probs=82.6
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
....||+-.|-+-+....++....|.-.. .....+...|+++.+...+....+. +.....+...+++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~---l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ---LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH---HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 34557776665555554444233333222 2233456778999988888765443 3345667888888888999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 008727 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNA 336 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (556)
+|..+-..|+...++ ++........+.-..|-++++...++++...+++.+....|.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 999988888876654 222232223334445677888888888777665555444443
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.23 E-value=44 Score=31.33 Aligned_cols=118 Identities=8% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHH
Q 008727 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE---VGEIEGALRLF 493 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 493 (556)
+.-+.++++..+.+. -+.......+..+.+..+.++..+.|+++.... +-+...|...+..... .-.+++...+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344555555555533 244455555666666666666666666666542 2245555555544333 22344555544
Q ss_pred HHHHHC------CC----CCCHh-------hHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 494 HNMLEK------GV----APDAT-------TYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 494 ~~m~~~------g~----~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.++. |. .+-.. .+..+..-+..+|..+.|+.+++.+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 444331 11 00011 122222333556777777777777777664
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.04 E-value=68 Score=33.36 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC-------hHHHHHHHHHHHhCCCCCChH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN-------TQKAFSVFNEVKFNCEDIGPE 155 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 155 (556)
..| .+|-.|.|.|++++|.++..+.... .......+...+..|....+ -++...-|.+..+...+.|+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344 5677788999999999988555443 34455667777788776532 335666666665554332443
No 330
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.90 E-value=76 Score=33.16 Aligned_cols=58 Identities=7% Similarity=-0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
...-++.-...++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444445666666666666654322 112222233445555566666666666665
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.71 E-value=76 Score=33.05 Aligned_cols=431 Identities=13% Similarity=0.054 Sum_probs=213.8
Q ss_pred hHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHH-hcCChhHHHHHHHHhHhCCCCCCH-----HhHHHHHHHHHcCCChH
Q 008727 65 SLALGFFNWASQQPNFTHSP--LSYHSILKSLS-LSRQINAIDSVLKQVKVNKITLDS-----SVYRFIIPSLIQGKNTQ 136 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~ 136 (556)
..|++.++-+.++...+|.. .++-.+...+. ...+++.|+..+++.....-.++- .....+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35777777776665555543 33445566665 688999999999876543322221 12334556666666655
Q ss_pred HHHHHHHHHHhCCCC----CChHhHHHH-HHHHHhcCCHhHHHHHHHHHHhCC---CccChhhHHHHHHHHH--hhCcHH
Q 008727 137 KAFSVFNEVKFNCED----IGPEICNSL-LAVLASDGYIDNALKMFDEMSHRG---VEFSTIGFGVFIWKFC--ENAKLG 206 (556)
Q Consensus 137 ~a~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~ 206 (556)
|....++..+.--. +-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876543111 122233333 333334478999999988876532 2333444444444443 345566
Q ss_pred HHHHHHHHHHhc-------cCCCCCchhhHHHHHHHH--hccCCHHHHHHHHHHHhh-------CC----------C--C
Q 008727 207 QVLSMLDEVRKR-------ENSMINGSVIAVLIIHGF--CKGKRVEEAFKVLDELRI-------RE----------C--K 258 (556)
Q Consensus 207 ~a~~~~~~~~~~-------~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~-------~~----------~--~ 258 (556)
.+.+.++.+... +...++...+|..+++.+ ...|+++.+...++++.+ .. + .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 676666666322 111334455565555554 456776666665555432 10 0 0
Q ss_pred -----------CCH---------HHHHHHHHH--HHhcCCHHHHHHHHHH-------HH-hcCCCCCh--------hhHH
Q 008727 259 -----------PDF---------IAYRIVAEE--FKLMGSVFEREVVLKK-------KR-KLGVAPRT--------NDYR 300 (556)
Q Consensus 259 -----------p~~---------~~~~~ll~~--~~~~~~~~~a~~~~~~-------~~-~~~~~~~~--------~~~~ 300 (556)
|.. ....-++.+ .+..+..+++.+++++ .. .....+.. ..+.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111 111222332 2233444455555544 33 11111111 1111
Q ss_pred HHHH---------HHHhcCCHHHHHHHHHHHHcCCCCC------CHHHHHHHH---HHHhcCChhHHHHHHH--------
Q 008727 301 EFIL---------GLIVERRICEAKELGEVIVSGKFTI------DDDVLNALI---GSVSSIDPRSAIVFFN-------- 354 (556)
Q Consensus 301 ~ll~---------~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~---~~~~~~~~~~a~~~~~-------- 354 (556)
..+. ..+-.+++..+...++.+.+..... ....+...+ ..-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 1111 2334688888998888877542211 111222222 2234689999999997
Q ss_pred HHHHcCCCCCHHHHHHH--HHHHH--hcCChHH--HHHHHHHHHh---CCCCccHhhHHHHH-HHHHhcC--CHHHHHHH
Q 008727 355 FMIEKGRVPTLSTLSNL--SKNLC--KRNKSDE--LVEVYKVLSA---NDYFTDMESYNVMV-SFLCTSG--RLREAYGV 422 (556)
Q Consensus 355 ~~~~~~~~~~~~~~~~l--l~~~~--~~g~~~~--a~~~~~~~~~---~~~~~~~~~~~~li-~~~~~~~--~~~~a~~~ 422 (556)
.....+...+..++..+ +-.+. .....++ +.++++.+.. .....+..+++.++ .++.... ...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44555555555555442 11222 2222333 6667766554 22222344444444 3332221 12244444
Q ss_pred HHHHHHCC--CCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC--CHHHHH-----HHHHHHHccCCHHH
Q 008727 423 IQEMKRKG--LDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSG--NLKTYN-----ILISKFSEVGEIEG 488 (556)
Q Consensus 423 ~~~m~~~~--~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~~~-----~li~~~~~~g~~~~ 488 (556)
+.+-.+.- ...+ ..+++.+...+. .|+..+..+........ .-.| ....|. .+...|-..|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 43322110 1112 122333333333 67777765555443321 1122 334453 34455778899999
Q ss_pred HHHHHHHHH
Q 008727 489 ALRLFHNML 497 (556)
Q Consensus 489 A~~~~~~m~ 497 (556)
|.....+..
T Consensus 596 a~~~~~~~~ 604 (608)
T PF10345_consen 596 AEEARQQLD 604 (608)
T ss_pred HHHHHHHHH
Confidence 999888765
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.40 E-value=30 Score=27.67 Aligned_cols=92 Identities=10% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHCCCCCCHh--HHHHHHHHHhhcCChhhHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 008727 427 KRKGLDPDVS--FYNSLMEACCREDLLRPAKKLWDQMFASG-----CSGNLKTYNILISKFSEVGE-IEGALRLFHNMLE 498 (556)
Q Consensus 427 ~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 498 (556)
.+.+..++.. ..+.++.-.+..+++.....+++.+.... -..+...|.+++.+..+..- ---+..+|+-|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3344444432 34666666666777777777777764321 02345566777777755554 3445666666666
Q ss_pred CCCCCCHhhHHHHHHHHHcc
Q 008727 499 KGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 499 ~g~~p~~~~~~~l~~~~~~~ 518 (556)
.+.+++..-|..++.++.+-
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 66677777777777766554
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.11 E-value=6.2 Score=21.87 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 473 YNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544
No 334
>PRK09687 putative lyase; Provisional
Probab=78.87 E-value=53 Score=30.09 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=85.9
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
+..+-...+.++.+.++ +++...+-.+.+. +|...-...+.++...+ +...+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 55555666677776665 4566666666552 45555555555555543 23456666666654 56777777788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 552 (556)
.++.+.|+. .|...+-+..+.+ + .....+.++...|+. +|+..+..+.+... +..+....+++|.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 888888874 5665555555442 2 244677888888884 68888888876554 66666666666543
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.61 E-value=15 Score=33.82 Aligned_cols=88 Identities=16% Similarity=-0.014 Sum_probs=48.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhh
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 453 (556)
-|.+.|.+++|+..|.......+. +.+++..-..+|.+...+..|..-.......+- .-...|.--+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 377777777777777665554322 666666666677777666666555554443310 012233333334344455555
Q ss_pred HHHHHHHHHH
Q 008727 454 AKKLWDQMFA 463 (556)
Q Consensus 454 a~~~~~~~~~ 463 (556)
|.+-++...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5555555554
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.79 E-value=16 Score=28.11 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..+-+..+..-++.|++.....-+.++-+.+++..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444444455555555555555555556665565555555443
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.72 E-value=5.7 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+|..+...|...|++++|.+.|++..+.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356778888999999999999999987644
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.50 E-value=52 Score=29.30 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFI---AYRIVAEEFKLMGSVFEREVVLKKKR 288 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~ 288 (556)
..++|+.-|++..+...+-... ....++....+.+++++..+.+.+++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4555555555554432111222 22334555556666666666555553
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.42 E-value=31 Score=34.55 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhH
Q 008727 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 454 (556)
..+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777776655433 455688888888888888888887775543 44566666667776666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
..+-....+.| . .|...-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 66666666655 2 233344667778888877776554
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.02 E-value=32 Score=30.83 Aligned_cols=88 Identities=9% Similarity=0.000 Sum_probs=51.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH----
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA---- 165 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 165 (556)
=|++++..+++.++....-+--+.--+....+...-|-.|.+.++...+.++-.......-.-+..-|.++...|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3677888888887766544333322233445555556667777877777777776654322223334555554443
Q ss_pred -hcCCHhHHHHHH
Q 008727 166 -SDGYIDNALKMF 177 (556)
Q Consensus 166 -~~g~~~~a~~~~ 177 (556)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 347777777665
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.64 E-value=38 Score=34.00 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (556)
..+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 356788888888776543 567799999999999999999999988775 45777788888888877
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
..+-....+.|.. |...-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777766532 33344677899999999988764
No 342
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.58 E-value=97 Score=31.94 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008727 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (556)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 393 (556)
....+.++.+-...+.....-++..|.+.|-.+.+.++.+.+-.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444555566666677777777766666665544
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.56 E-value=81 Score=31.04 Aligned_cols=98 Identities=8% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCHhHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHHHC-CCCCCHh
Q 008727 432 DPDVSFY-NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF---SEVGEIEGALRLFHNMLEK-GVAPDAT 506 (556)
Q Consensus 432 ~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~-g~~p~~~ 506 (556)
.|+..++ +.++..+-..|-.++|...+..+.... +|+...|..+|..= ..+| ...+.++++.|... | .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 4555554 566777778888999999999888764 66777787777542 2333 77788888888654 6 4677
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.|.-.+.-=...|..+-+-.++.+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777666665678888877777766543
No 344
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.43 E-value=37 Score=28.82 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=65.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTD----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
-+.+.|++++|..-|....+.-+... ...|..-..++.+.+.++.|+.-....++.+.. ......--..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 47889999999999998887533322 224555556777888899998888888876432 2222223344678888
Q ss_pred ChhhHHHHHHHHHHcCCCCCHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLK 471 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~ 471 (556)
.++.|++-|+.+.+. .|...
T Consensus 183 k~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHHh--CcchH
Confidence 899999999999875 45443
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.12 E-value=4.5 Score=21.07 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHhHHHHH
Q 008727 160 LLAVLASDGYIDNALKM 176 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~ 176 (556)
+...+...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444443
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.27 E-value=6.6 Score=23.84 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=14.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 347
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.14 E-value=11 Score=23.42 Aligned_cols=33 Identities=0% Similarity=0.083 Sum_probs=20.2
Q ss_pred HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHH
Q 008727 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 548 (556)
.+.|...++..++++|.+.|+..++.++..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555666666666666666666666665544
No 348
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.61 E-value=22 Score=27.35 Aligned_cols=46 Identities=7% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
..+-++.+...++.|+.......+.++-+.+|+..|.++|+.++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566666666666666666666666666666666554
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.16 E-value=4.4 Score=22.21 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 008727 512 LEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555555555555444
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.02 E-value=47 Score=29.88 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=54.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh--
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE-- 201 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-- 201 (556)
.=|.++++.|+|.++....-+--..--+..+.+...=|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346778888888887765544432222334556666677788888888888877776654322233446666655543
Q ss_pred ---hCcHHHHHHHH
Q 008727 202 ---NAKLGQVLSML 212 (556)
Q Consensus 202 ---~g~~~~a~~~~ 212 (556)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666665
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.69 E-value=79 Score=28.70 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK-----LGVAPRTNDY 299 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 299 (556)
+.....|..+|.+.+|.++-+...... +.+...+-.++..+...|+--.+.+-++.+.+ .|+..+...+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 445677788888888888888777653 34667777788888888886666666655432 2666555443
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.92 E-value=53 Score=26.35 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHhhcCC-hhhHHHHHHHHHHcCCCCCHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGL-----DPDVSFYNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKTYNIL 476 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (556)
.|.++.-....++....+++++.+..... .-+...|.+++.+.++..- --.+..+|..+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555555555555555432110 1244567777777765554 33456677777776677777777777
Q ss_pred HHHHHcc
Q 008727 477 ISKFSEV 483 (556)
Q Consensus 477 i~~~~~~ 483 (556)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 353
>PRK12798 chemotaxis protein; Reviewed
Probab=69.60 E-value=1.1e+02 Score=29.49 Aligned_cols=189 Identities=11% Similarity=-0.005 Sum_probs=111.3
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHH--HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-CC
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD-GY 169 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 169 (556)
.....|++.....++. .+..++.. ..|+.+. .-.|+..++.+.+..+.....++....|-.|+.+-.-. .+
T Consensus 90 y~lSGGnP~vlr~L~~----~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 90 YLLSGGNPATLRKLLA----RDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred hHhcCCCHHHHHHHHH----cCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 3446777776555444 34322222 2233332 23689999999999998777777777888888776554 67
Q ss_pred HhHHHHHHHHHHhC--CCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC---CHHH
Q 008727 170 IDNALKMFDEMSHR--GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK---RVEE 244 (556)
Q Consensus 170 ~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~ 244 (556)
..+|+++|+...-. |.-.......--+-.....|+.+++..+-.+...+....+.-...+..+.....+.+ ..+.
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 99999999986432 211122333333445677899999888877777663333433333343444444433 2333
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 245 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...++..|... --...|-.+.+.-.-.|+.+-|...-.+.+..
T Consensus 244 l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 244 LVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 33344433211 12346777777777778877776666665554
No 354
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.23 E-value=19 Score=28.95 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=22.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
++..+...++.-.|.++++++.+.++..+.+++-.-++.+-..|+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444444444445555555555555555544444444455555444
No 355
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.11 E-value=80 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=26.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 008727 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 217 (556)
.+..+.+--.++.+-....++..+.....+++ +...||..+|+.-++.-..
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVN 220 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhc
Confidence 33333333344444444455555554444444 4566777777766665543
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.10 E-value=59 Score=26.17 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFY-NSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
..++.+++..++..|.-. .|+..-. ..-...+...|++.+|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 467777777777777765 3332211 122234556778888888888777653
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.90 E-value=1.3e+02 Score=29.78 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHH
Q 008727 331 DDVLNALIGSVSSI-DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (556)
Q Consensus 331 ~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (556)
....-+++..+..+ ...-...+..+|..-| -+...+..++.+|... ..+.-..+++++.+..+. |++.-..+..-
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 33344444444433 3334444555555544 2455666677777666 556667777777766554 55555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPD------VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSE 482 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 482 (556)
|-+ ++...+..+|......-+ |. ...|..+...- ..+.+...++...+.+. |...-...+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 554 667777777776655321 11 12444444322 24556666666666543 444455566666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
..++.+|++++....+..-+ |...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 88888888888877765432 455555555544
No 358
>PRK09687 putative lyase; Provisional
Probab=67.35 E-value=1e+02 Score=28.25 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
+..+-...+.++.+.++. .+...+-.+.+. +|..+-...+.++.+.+ ....+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 344444555566666653 344444444432 34445555555555542 23455555555553 34666667777
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
.++++.++. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777763 4555544444432 2 233566777777775 577777777753 346666666666654
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.41 E-value=45 Score=23.86 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=31.6
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHH
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 173 (556)
.++++...+.|+ .+......+-.+-...|+.+.|.+++..+. . .+..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 345555555552 333333333333334456666666666665 3 233555556655555554433
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.15 E-value=23 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=24.0
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
.|++.+|..++..+...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777777777777777777777777777654
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.77 E-value=30 Score=29.52 Aligned_cols=52 Identities=8% Similarity=-0.068 Sum_probs=30.6
Q ss_pred hcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..++.+......+.+.+. ...|++.+|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444333333333322 2367777777777777777777777777777764
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.77 E-value=77 Score=26.50 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcC----C-------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 417 REAYGVIQEMKRKGLDPD-VSFYNSLMEACCRED----L-------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 417 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
++|+.-|++.... .|+ ..++..+..+|...+ + +++|.+.|++... ..|+..+|+.-+....
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 3344444444443 344 345555555554332 2 3444444444444 3677777776666553
Q ss_pred CHHHHHHHHHHHHHCC
Q 008727 485 EIEGALRLFHNMLEKG 500 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g 500 (556)
+|-++..++.+.+
T Consensus 125 ---kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ---KAPELHMEIHKQG 137 (186)
T ss_dssp ---THHHHHHHHHHSS
T ss_pred ---hhHHHHHHHHHHH
Confidence 3455555555443
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.62 E-value=1.1e+02 Score=27.91 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 496 (556)
...+.|..+|.+.+|.++.++..... +.+...|-.|+..++..|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33344455555555555555555443 344444555555555555544444444444
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.50 E-value=1.8e+02 Score=30.51 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=61.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCC---ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFNCEDI---GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 202 (556)
++-+.+.+.+++|+++.+..... .+ ....+...|..+.-.|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44456678888888887766433 22 3357788888888889999988888887664 334454444444444
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
++......++ .. +....+..+|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt--~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PT--GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CC--CCcccCchHHHHHHHHHHH
Confidence 4443322221 11 1112345677777766665
No 365
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.79 E-value=61 Score=25.32 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHHHHHhHhCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHH
Q 008727 102 AIDSVLKQVKVNKITL-DSSVYRFIIPSLIQGKNTQKAFSVFN 143 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (556)
.+.++|..|..+|+.. .+..|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544322 23344444444455555555555544
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.68 E-value=16 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=17.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 504 DATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
|....-.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444455666677777777776666654
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.66 E-value=12 Score=19.58 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=11.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 473 YNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555544443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.82 E-value=29 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~ 422 (556)
++..++++|+.-|++++++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555443
No 369
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.76 E-value=50 Score=30.58 Aligned_cols=91 Identities=15% Similarity=0.037 Sum_probs=53.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH
Q 008727 339 GSVSSIDPRSAIVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (556)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 417 (556)
.++.+|.+++|++.|..-... .| +..++..-..+|.+...+..|+.=.......+-. -+..|+--+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 346678899999999776554 34 6777777778899988888777655555443110 1112333333333334445
Q ss_pred HHHHHHHHHHHCCCCCC
Q 008727 418 EAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~ 434 (556)
+|.+-++...+. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 555555544443 455
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.39 E-value=20 Score=25.02 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=29.7
Q ss_pred HHHHHhhhhhccChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 008727 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHS-PLSYHSILKSLSLSRQINAIDSV 106 (556)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 106 (556)
.+.+.|+.+...+...|++.+..+.++..-.++ ..++..+++++...|++.+++++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655455566666666666444322222 13344555666666666665543
No 371
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.27 E-value=1.2e+02 Score=27.72 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHhccCCHHHHHHHHHH-HhhCCCCCCHH----HHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDE-LRIRECKPDFI----AYRIVAEEFKLM-GSVFEREVVLKKKRKLGVAPRTNDYREFILG 305 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~-m~~~~~~p~~~----~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 305 (556)
|..-..+...+++......+ |++.+ -|+.. .|..++++--=+ ..-.-|.+.++.+ .+|..|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHH
Confidence 34444455556666655544 44443 44543 466666653211 1111233333333 368889999
Q ss_pred HHhcCCHHHHH
Q 008727 306 LIVERRICEAK 316 (556)
Q Consensus 306 ~~~~~~~~~a~ 316 (556)
++..|+.+...
T Consensus 331 f~s~g~sEL~L 341 (412)
T KOG2297|consen 331 FCSQGQSELEL 341 (412)
T ss_pred HhcCChHHHHH
Confidence 99998877654
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.24 E-value=90 Score=26.18 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 135 TQKAFSVFNEVKFNCEDIGP-------EICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
++.|+.+|+.+.+.-..|.. -.-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 55777777777654322211 0223445667777888888877777766
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.16 E-value=37 Score=33.93 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
+.|...-.+-..|+...|...+..+....-.-..+....|.....+.|-..+|..++.+.+... ...+.++-.+.+++.
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYL 687 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHH
Confidence 3343333345568888888887777643211122334456666777788888999988887664 345677888888999
Q ss_pred ccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhh
Q 008727 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 552 (556)
-..+++.|++.|+..++.+.. ...+-+.|...-|+
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTK-CPECENSLKLIRCM 722 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHh
Confidence 999999999999999887764 33444444444444
No 374
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.09 E-value=30 Score=21.45 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=21.2
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 95 SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
.+.|-.+++..+++.|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666677777777776666666665554
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.77 E-value=1.4e+02 Score=28.24 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---cHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT---DMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
...++..+...+-+.|+++.|...+..+...+... .+.+.-.-...+-..|+.++|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567778888999999999999999988754221 333444555666778999999999988777
No 376
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.35 E-value=8.5 Score=29.98 Aligned_cols=29 Identities=38% Similarity=0.708 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 484 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
|.-.+|..+|++|++.|-.||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4445566666666666666543 5555544
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.00 E-value=79 Score=31.79 Aligned_cols=100 Identities=11% Similarity=-0.031 Sum_probs=66.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHH
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKK 456 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 456 (556)
..|+...|...+.......+.-..+....+.+...+.|....|-.++.+..... ...+.++-.+.+++....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777777777766544333333445556666667777778888877766654 3356677788888888889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH
Q 008727 457 LWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~ 478 (556)
.|+++.+.. +.+...-+.|..
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHH
Confidence 888888764 334444444443
No 378
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.49 E-value=1.5e+02 Score=28.02 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=31.6
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhcCChhHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNF-THSPLSYHSILKSLSLSRQINAI 103 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a 103 (556)
.++.+..+|..+..+.+..++-++-.+.-.... .|++++.-.++.-+....+.++.
T Consensus 38 ~~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eql 94 (422)
T KOG2582|consen 38 NSSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQL 94 (422)
T ss_pred CcchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHH
Confidence 445555666666555556666555544333222 46777777777777666664443
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.45 E-value=64 Score=23.87 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+...|++++|..+.+.+ ..||...|-.|-. .+.|..+++..-+.+|-.+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555544443 2445554443322 24444444444444444444
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.06 E-value=1.4e+02 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 520 NLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 520 ~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6677777777777777666655555
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.85 E-value=1e+02 Score=25.78 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC----C-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 451 LRPAKKLWDQMFASGCSGNL-KTYNILISKFSEVG----E-------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
+++|..-|++.+. +.|+- .++..+..+|...+ + +++|.+.|++..+ ..|+...|+.-+....+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k- 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK- 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh-
Confidence 3444444555555 45664 66777777776543 3 4455555555554 47999999988877643
Q ss_pred CCHHHHHHHHHHhhhC
Q 008727 519 TNLQAAFEVFNKSVNH 534 (556)
Q Consensus 519 g~~~~a~~~~~~m~~~ 534 (556)
|-++..++.+.
T Consensus 126 -----ap~lh~e~~~~ 136 (186)
T PF06552_consen 126 -----APELHMEIHKQ 136 (186)
T ss_dssp -----HHHHHHHHHHS
T ss_pred -----hHHHHHHHHHH
Confidence 44444444443
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.22 E-value=1.8e+02 Score=28.39 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhh
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDME---SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCR 447 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~ 447 (556)
..+..|+.+ +++.+.+.|..|+.. -.+ .+...+..|+.+-+.. +.+.|..++. .-.+.+ ...+.
T Consensus 108 ~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~TpL-~~A~~ 177 (413)
T PHA02875 108 LATILKKLD----IMKLLIARGADPDIPNTDKFS-PLHLAVMMGDIKGIEL----LIDHKACLDIEDCCGCTPL-IIAMA 177 (413)
T ss_pred HHHHhCCHH----HHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHhcCCCCCCCCCCCCCHH-HHHHH
Confidence 344556654 334444455544332 222 2333445666554433 3344443332 222223 33334
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 008727 448 EDLLRPAKKLWDQMFASGCSGNLKT---YNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 505 (556)
.|+.+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 178 ~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 178 KGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred cCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 45543 4444555665554322 123444344556653 44455556666653
No 383
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.22 E-value=71 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577777778888888888888877766
No 384
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.33 E-value=43 Score=27.06 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 445555555555555544444444444455555443
No 385
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=58.06 E-value=38 Score=28.13 Aligned_cols=60 Identities=12% Similarity=-0.019 Sum_probs=34.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 008727 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (556)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 521 (556)
+.+.|+..+..=. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444655554433 34444444455666777777776666666666655566666666654
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.39 E-value=82 Score=23.82 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
-|..|+..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888899999999999988876
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.60 E-value=79 Score=23.42 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHHH
Q 008727 411 CTSGRLREAYGVIQE 425 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~ 425 (556)
...|++++|..+.+.
T Consensus 50 mNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 50 MNRGDYQSALQLGNK 64 (115)
T ss_pred HccchHHHHHHhcCC
Confidence 344444444444433
No 388
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.46 E-value=20 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=23.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444555566666666555555555555555555555554
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.33 E-value=31 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008727 267 VAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~ 287 (556)
+|.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444555555555555554443
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.97 E-value=24 Score=32.03 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 508 (556)
|+..|....+.||+++|+.+++|..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666654333333
No 391
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.56 E-value=15 Score=28.43 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=25.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
.++..+...+..-.|.++++.+.+.++.++.+++-.-|+.+.+.|+|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34444444444555666666666666666655555555666666653
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.10 E-value=1e+02 Score=31.50 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC--CCccChhhHHHHHHHHHhhCcH
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHR--GVEFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 205 (556)
+|+.+|..+|++-.+.++++..... |-+.=...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 7788888888888888888877653 2222334566666666666654
No 393
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.99 E-value=1.5e+02 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
|.+.....+++.|. .+++++|.+++.++.+.|+.|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 45555555555443 3556666666666666666643
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.68 E-value=91 Score=26.15 Aligned_cols=21 Identities=14% Similarity=0.512 Sum_probs=12.7
Q ss_pred HHHhhcCChhhHHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~ 463 (556)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345666666666666666654
No 395
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.73 E-value=3.1e+02 Score=29.42 Aligned_cols=336 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHh
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (556)
..|...|++++|.++-..-...- ..++..=...|.+.+++..|-+++.++ ...+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~l----e~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDAL----ETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHHhh-----------------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 008727 172 NALKMFDEMSHRGVEFSTIGFGVFIWKFCEN-----------------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234 (556)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 234 (556)
++..|-.=+-..++|...+-..++....-. ..++.-.+.+.+-.........+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------------------------HHh
Q 008727 235 GFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK-------------------------KRK 289 (556)
Q Consensus 235 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------------------~~~ 289 (556)
.+...|+.+++..+-.-|.+ |..++..+.+.+.+++|++++.. ...
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHH
Q ss_pred cCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 008727 290 LGVAPRTNDYREFILGLIVE---RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS 366 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (556)
.+-.....-...++..+.+. .....+...++.....-...++...|.++..|.....+.....++.....+-. ..+
T Consensus 584 ~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~-~~Y 662 (911)
T KOG2034|consen 584 QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR-VHY 662 (911)
T ss_pred ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc-cee
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
-....++.|.+.+.-..+..++..|. .|...+..-.+.. .+.|...-....+....--..-.+.-=+...
T Consensus 663 Dl~~alRlc~~~~~~ra~V~l~~~l~---------l~~~aVdlAL~~d-~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~ 732 (911)
T KOG2034|consen 663 DLDYALRLCLKFKKTRACVFLLCMLN---------LFEDAVDLALQFD-IDLAKVIANDPEEDEDLRKKLWLKIAKHVVK 732 (911)
T ss_pred cHHHHHHHHHHhCccceeeeHHHHHH---------HHHHHHHHHhhcC-HHHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q ss_pred hcCChhhHHHHHHH
Q 008727 447 REDLLRPAKKLWDQ 460 (556)
Q Consensus 447 ~~~~~~~a~~~~~~ 460 (556)
...+..+++..++.
T Consensus 733 ~~~~ikk~i~~Lk~ 746 (911)
T KOG2034|consen 733 QENDIKKAIRFLKE 746 (911)
T ss_pred hhccHHHHHHHhcc
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.31 E-value=5e+02 Score=31.69 Aligned_cols=115 Identities=10% Similarity=-0.039 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH----HhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 008727 159 SLLAVLASDGYIDNALKMFDEM----SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 234 (556)
.|..+-.+++.+..|...++.- .+.. ....-|-.+...|...+++|....+....... ...+. -|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~sl~~-qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------PSLYQ-QIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------ccHHH-HHH
Confidence 4455666778888888888773 2221 12233444444788888888877766642211 12222 344
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 235 GFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 235 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
.....|+++.|...|+.+.+. .|+ ..+++-++......|.++..+-..+
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhc
Confidence 556788888888899888876 344 5566666666666677666655443
No 397
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.32 E-value=1.9e+02 Score=26.56 Aligned_cols=19 Identities=16% Similarity=0.515 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhcCCHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a 419 (556)
..|..++.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3577777777777766544
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.76 E-value=82 Score=22.94 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=13.0
Q ss_pred HHHHccCCHHHHHHHHHHhhh
Q 008727 513 EGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~m~~ 533 (556)
......|++++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334556777777777766544
No 399
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.75 E-value=3.1e+02 Score=29.41 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=18.2
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 186 (556)
+......++..+.. ++..+++.+++++...|+.
T Consensus 245 d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 245 DQTYMVRLLDALAA-GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 34444444554333 6666666666666666553
No 400
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.99 E-value=56 Score=21.65 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=13.9
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
..|++-++.++++.+-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 45555555555555544322223334444443
No 401
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.85 E-value=1.7e+02 Score=25.57 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=34.5
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC---CHHhH--HHHHHHHHcCCChHHHHHHHHHHH
Q 008727 73 WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITL---DSSVY--RFIIPSLIQGKNTQKAFSVFNEVK 146 (556)
Q Consensus 73 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~ 146 (556)
|-.+-..+.+...-+|.|+=-|.-...+.+|-..|.. ..|+.+ +...+ ..-|+.....|+.+.|++....+.
T Consensus 15 w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 15 WEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3333344455555555554444433334444443432 333333 22222 334555566677777776666653
No 402
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.30 E-value=2.2e+02 Score=26.71 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=56.2
Q ss_pred hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc---CCHhHHHHHH
Q 008727 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD---GYIDNALKMF 177 (556)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~ 177 (556)
+.-+.++++.++.+ +.+.......++.+.+..+.+...+.++.+....+. +...|...++..... -.++...++|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44566788877775 567778888888888888888888889888876433 677888877776552 2355666666
Q ss_pred HHHH
Q 008727 178 DEMS 181 (556)
Q Consensus 178 ~~m~ 181 (556)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5543
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.97 E-value=2.1e+02 Score=27.63 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=38.4
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHH--hHHHHHHHHH--cCCChHHHHHHHHHHHhC
Q 008727 92 KSLSLSRQINAIDSVLKQVKVNKITLDSS--VYRFIIPSLI--QGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 148 (556)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788888888888888886 555544 4455555554 456778888888877654
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.52 E-value=1.3e+02 Score=23.84 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=29.6
Q ss_pred CCHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 433 PDVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 433 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
++..+-..+.+++.+..+ ..+.+.+++.+.+.. .|+ ....--|.-++.+.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444444455544432 334455555555421 121 122223344555555555555555555543
No 405
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.39 E-value=97 Score=22.27 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
+.++++.+.+.|+- +......+..+-...|+.+.|.+++..+. .|.. .|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 33445555555532 22222333222224466666666666666 4332 556666666555554433
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.26 E-value=3.4e+02 Score=28.55 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=27.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLS 392 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 392 (556)
+..++++.+...+..|..... -...-.--+.+++...|+.++|..+|+.+.
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 355666666666666533221 122223334455555677777777766653
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.88 E-value=3.7e+02 Score=28.91 Aligned_cols=226 Identities=15% Similarity=0.051 Sum_probs=122.2
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHH--HhcCChhHHHHHHHHHHHc----CCCCCHHHHHHH
Q 008727 305 GLIVERRICEAKELGEVIVSGKFTIDD-------DVLNALIGS--VSSIDPRSAIVFFNFMIEK----GRVPTLSTLSNL 371 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~--~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 371 (556)
......++.+|..+..++...-..++. ..++++-.. ...++++.|.++-+...+. -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 444567888888887776644333222 234555433 4568888888887766543 234455666777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHh---hHHHHHHH--HHhcCCH--HHHHHHHHHHHHCC--CC----CCHhHH
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDME---SYNVMVSF--LCTSGRL--REAYGVIQEMKRKG--LD----PDVSFY 438 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~--~~~~~~~--~~a~~~~~~m~~~~--~~----p~~~~~ 438 (556)
..+..-.|++++|..+.....+..-.-++. .|..+..+ +...|+. .+....+....... -+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888999999999887765531111222 33333332 4445632 22333333322210 01 123455
Q ss_pred HHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHhhHHHH
Q 008727 439 NSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTY--NILISKFSEVGEIEGALRLFHNMLEKGVAP----DATTYTSL 511 (556)
Q Consensus 439 ~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l 511 (556)
..++.++.+.. ...++..-++--......|-...+ ..|+..+...|+.++|...++++......+ +..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 55666665521 112222222222222112222222 367788888999999999999988753333 22222222
Q ss_pred HHH--HHccCCHHHHHHHHHH
Q 008727 512 LEG--LCQETNLQAAFEVFNK 530 (556)
Q Consensus 512 ~~~--~~~~g~~~~a~~~~~~ 530 (556)
+.. -...|+.+++.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 2456888888777766
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.74 E-value=43 Score=30.56 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=19.2
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 008727 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258 (556)
Q Consensus 224 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 258 (556)
+....|+..|....+.||+++|++++++.++.|..
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 33444455555555666666666666665555543
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.40 E-value=2.3e+02 Score=26.40 Aligned_cols=80 Identities=14% Similarity=0.007 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCC----CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHH
Q 008727 382 DELVEVYKVLSANDY----FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 457 (556)
+.|.+.|+.....+. ..++.....++....+.|..+.-..+++.... .++...-..++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 344455555444211 22333334444444445544443333333332 12444455555555555555555555
Q ss_pred HHHHHHc
Q 008727 458 WDQMFAS 464 (556)
Q Consensus 458 ~~~~~~~ 464 (556)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 410
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.34 E-value=99 Score=22.11 Aligned_cols=43 Identities=9% Similarity=0.244 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
++|+-....|+..|+..|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5566666666666666666666665555555556666666553
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.82 E-value=2.1e+02 Score=25.82 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHH
Q 008727 225 GSVIAVLIIHGFCKGKRVEEAFKVL 249 (556)
Q Consensus 225 ~~~~~~~li~~~~~~~~~~~A~~~~ 249 (556)
++.....+...|.+.|++.+|..-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555666666666666665554
No 412
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.38 E-value=80 Score=20.95 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=23.8
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH-----hcCCHhHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA-----SDGYIDNALKM 176 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~ 176 (556)
...|++-+|-++++.+-.....+....+..||+..+ +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 346667777777776654322334445555554432 34555555444
No 413
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.20 E-value=2e+02 Score=25.36 Aligned_cols=18 Identities=0% Similarity=-0.075 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 008727 273 LMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~ 290 (556)
..+++.+|+.+|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666655544
No 414
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.40 E-value=1.8e+02 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 008727 260 DFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~a 280 (556)
|...|..++.+|.-.|+...+
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHH
Confidence 555566666666555554443
No 415
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.35 E-value=2.1e+02 Score=26.40 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 124 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
.++....+.++.....+.+..+. ....-...++.+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555555555553 333445556666677777777777776654
No 416
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=46.08 E-value=2.5e+02 Score=26.05 Aligned_cols=52 Identities=6% Similarity=-0.020 Sum_probs=39.4
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (556)
...+..+++...+.|+.-|...+..++.. ..|+...|+-.++.+...|-..+
T Consensus 191 ~~iv~rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 191 EDIVDRLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccc
Confidence 45667778888888998898888777554 46889999998888877654444
No 417
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.67 E-value=2.1e+02 Score=25.00 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=17.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 512 LEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
.....+.|+.++|.++|.+++..+-.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34456778888888888777665533
No 418
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.54 E-value=1.9e+02 Score=24.56 Aligned_cols=55 Identities=25% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIREC--------------KPDFIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~--------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
+++..|-+..+|.+..++++.|.+..+ .+.-...|.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 466677777788888888877765321 2223344555555666666666666655
No 419
>PRK10941 hypothetical protein; Provisional
Probab=45.18 E-value=2.4e+02 Score=25.65 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=27.5
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33444555555555555555555432 22333343344445555555555555555443
No 420
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=45.10 E-value=30 Score=21.25 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=26.4
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008727 71 FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVK 111 (556)
Q Consensus 71 f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 111 (556)
.+++.++..++.+...+..+.+.+-..+....+..+|+++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35566677777777777777777776666666666666554
No 421
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.23 E-value=50 Score=22.17 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
.|....++.++..+++..-.++++..+.++.+.|.- +..+|-.-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 345556677777777777777777777777776642 45555555555544
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.02 E-value=3.2e+02 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.030 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 448 (556)
.++.+.|+.++..|.+.|..|....-..++.++-..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 366777777777777777666554444444444333
No 423
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.98 E-value=1.2e+02 Score=21.75 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 008727 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180 (556)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (556)
++|+-....|+..|+.+|..+++.+.-+=.++...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444444443444444444444
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.94 E-value=1.3e+02 Score=24.23 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=18.2
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 008727 108 KQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED 151 (556)
Q Consensus 108 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (556)
+.+.+.|+.++. ....+++.+.+.++.-.|.++++.+.+.++.
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 333444443332 2223344444444444455555555444433
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.93 E-value=34 Score=26.85 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 008727 414 GRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~ 434 (556)
|.-..|..+|+.|.+.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333444555555555554444
No 426
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.56 E-value=4.5e+02 Score=28.35 Aligned_cols=228 Identities=11% Similarity=0.049 Sum_probs=113.9
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCC--CCc---hhhHHHH-HHHHhccCCHHHHHHHHHHHhhC----CCCCCHHHHHHH
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSM--ING---SVIAVLI-IHGFCKGKRVEEAFKVLDELRIR----ECKPDFIAYRIV 267 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~---~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l 267 (556)
......++++|..++.++....+.. ... ...++.+ .......|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445688888888888887652221 000 1122222 12233467888888887766543 233455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-----HHHhcCCHHHH--HHHHHHHHcC---CCCCC---HHHH
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL-----GLIVERRICEA--KELGEVIVSG---KFTID---DDVL 334 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a--~~~~~~~~~~---~~~~~---~~~~ 334 (556)
..+..-.|++++|..+..+..+.....+...+..+.. .+...|+...+ ...+..+... ..+.. ....
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777888999999888776665433334433332222 34455632222 2222222211 11111 1122
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCc----cHhhHHHH
Q 008727 335 NALIGSVSS--IDPRSAIVFFNFMIEKGRVPTLSTL--SNLSKNLCKRNKSDELVEVYKVLSANDYFT----DMESYNVM 406 (556)
Q Consensus 335 ~~l~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 406 (556)
..+..++.+ +...++..-+.........|-..-. ..++......|+.++|...++++......+ +-..-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 222222222 1222222222222222222322222 256777888899999998888876533222 22222222
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 008727 407 VSF--LCTSGRLREAYGVIQE 425 (556)
Q Consensus 407 i~~--~~~~~~~~~a~~~~~~ 425 (556)
+.. ....|+.+++...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3346777777666655
No 427
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.86 E-value=64 Score=20.59 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=11.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhCC
Q 008727 513 EGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
-++.+.|++++|.+..+.+++..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHhhC
Confidence 34455555555555555554433
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.84 E-value=1.7e+02 Score=26.86 Aligned_cols=72 Identities=7% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh----------CcHHHH
Q 008727 139 FSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN----------AKLGQV 208 (556)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------g~~~~a 208 (556)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.... .-|..|+..||.. ||+..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4566777777777777777777777777777777777777776532 2255555555543 777777
Q ss_pred HHHHHHH
Q 008727 209 LSMLDEV 215 (556)
Q Consensus 209 ~~~~~~~ 215 (556)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7777654
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.40 E-value=1.2e+02 Score=27.21 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 475 ILISKFSEVGEIEGALRLFHNMLE----KGV-APDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556666666666666666532 121 223344455555556666666655554433
No 430
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=41.71 E-value=2.1e+02 Score=23.95 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 419 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+++..+.+.|.--|...-...+..-.+.| ..-..+..++...|+ +..+....+..+......+.|..++.+-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 5556666666666655554445555555555 555667777777774 334444555555555556666666655443
Q ss_pred C-CCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhh
Q 008727 499 K-GVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSV 532 (556)
Q Consensus 499 ~-g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~ 532 (556)
. +..|+..-...+...+.+.| .++.+..++..+.
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 3 24455555555666666666 3455555555543
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.60 E-value=5e+02 Score=28.32 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=59.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChHhHHHHHHHHHhcCCH--hHHHHHHHHHHhCCCccChhhHH--
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNC---EDIGPEICNSLLAVLASDGYI--DNALKMFDEMSHRGVEFSTIGFG-- 193 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~-- 193 (556)
-|..|+..|...|+.++|+++|.+..... ..--...+..+++.+.+.+.. +-+++.-+.....+..-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46667777777777777777777765522 111112333455555554443 44444444333322111001110
Q ss_pred ----------HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 194 ----------VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 194 ----------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
..+-.|+.....+-++.+++.+...+ ..++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 12235677777788888888877651 22234455666666654
No 432
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.39 E-value=2.5e+02 Score=24.74 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=53.5
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 402 SYNVMVSFLC--TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 402 ~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
.|...++++. .++++++|++.+.+- .+.|+- -..++.++...|+.+.|..+++...-.. .+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 3445555543 345666666666321 111221 1246666666777777777776654221 122222333333
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
..++.+.+|...-+...+.. ....+..++..+...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHH
Confidence 55577777776666654321 134566666665543
No 433
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.06 E-value=1.4e+02 Score=21.72 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=7.9
Q ss_pred HHhcCCHHHHHHHHHHH
Q 008727 410 LCTSGRLREAYGVIQEM 426 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m 426 (556)
....|+.++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444555554444443
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.96 E-value=1.4e+02 Score=24.73 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=46.2
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 008727 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG 488 (556)
Q Consensus 424 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 488 (556)
+.+.+.|++++..= ..++..+...++.-.|.++++.+.+.+...+..|.---+..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34566788765543 35556666667788999999999998877777776666778888876543
No 435
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.93 E-value=1.2e+02 Score=22.93 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=22.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (556)
++.+.+....++|+++++.|.++| ..+...-+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555666677788888888888877 4555444444
No 436
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.90 E-value=3.7e+02 Score=26.57 Aligned_cols=124 Identities=10% Similarity=-0.047 Sum_probs=75.6
Q ss_pred HHHHHhcCChhHHHH-HHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 008727 91 LKSLSLSRQINAIDS-VLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (556)
Q Consensus 91 l~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (556)
|.--...|+...|-+ ++.-+......|+.. ......+...|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 444445677666644 444444332233333 33334456678888888887766432 22255677888888888899
Q ss_pred HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
+++|..+-+-|....++ +........-..-..|-++++...++++...
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999888888776654 2232222222334557778888888777654
No 437
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.67 E-value=4.7e+02 Score=27.72 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-------------CCChHhHHHHHHHHHhcCCHhHHHHHHHH
Q 008727 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE-------------DIGPEICNSLLAVLASDGYIDNALKMFDE 179 (556)
Q Consensus 113 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (556)
.|+..+......+++.. .|+...++.+++++...|. ..+......|+.++.+ ++...++.++++
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~ 270 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQE 270 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 35555666555555443 4666666666665543220 1133345556665554 788889999999
Q ss_pred HHhCCCccC
Q 008727 180 MSHRGVEFS 188 (556)
Q Consensus 180 m~~~~~~~~ 188 (556)
+...|+.+.
T Consensus 271 L~~~G~d~~ 279 (709)
T PRK08691 271 MAACAVGFD 279 (709)
T ss_pred HHHhCCCHH
Confidence 888887544
No 438
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.49 E-value=3.9e+02 Score=26.77 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=17.6
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHH
Q 008727 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146 (556)
Q Consensus 113 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 146 (556)
.|+..+......+++ ...|+...|+.+++++.
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 355555555544433 23466666776666653
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.23 E-value=3.2e+02 Score=25.73 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
.++...+++.+++. -|+. .-|-++.......|.+++++.+|++++..|..|=...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45667777777764 4553 4566677777777777777888888777777776665555555543
No 440
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=4.8e+02 Score=27.55 Aligned_cols=310 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhH-HHHHHHHHhcCCHhHHHHHHHHHH-hCCCccChhhHHHHHHHHHhhCcHHHHHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMS-HRGVEFSTIGFGVFIWKFCENAKLGQVLSM 211 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 211 (556)
...+.+...+.+-+..-.|+..+- -.+-..|...|++++|++.--... ..++.++...+..++ +-|-..-.+++.+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiv-ak~id~yi~~~~~~ 116 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIV-AKCIDMYIETASET 116 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHH-HHHHHHHHHHHHHH
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHhcCC-HHHHHH
Q 008727 212 LDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE--------CKPDFIAYRIVAEEFKLMGS-VFEREV 282 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~~~-~~~a~~ 282 (556)
++.-.+..+..+.-..+.+-++..|...+++..|+-+.-+....+ ..-+....+.++..+....+ -+--.+
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 008727 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362 (556)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (556)
+++.+.+.-.+.....|..+..++.-..+.+.+.++++.+.+ -......|......+.+...+--..+.+.+... ..
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~--e~~~llayQIAFDL~esasQefL~~v~~~l~~d-~~ 273 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK--EDDLLLAYQIAFDLYESASQEFLDSVLDRLPAD-DA 273 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh--cchhhhHHHHHHHHhhccCHHHHHHHHHHcccc-cc
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
-+......+++.++..-..+.-.+++-.--.. |....+..-+.. +..-...|.-+-..+...|-. +...+..=+
T Consensus 274 ~de~p~~kii~ILSGe~tik~~l~FL~~~N~t----D~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT-~D~FlR~NL 347 (929)
T KOG2062|consen 274 RDEKPMEKIISILSGEETIKLYLQFLLRHNNT----DLLILEEIKESV-RNSVCHTATLIANAFMHAGTT-SDTFLRNNL 347 (929)
T ss_pred cccChHHHHHHHhcCchHHHHHHHHHHHcCCc----hHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCc-chHHHHhch
Q ss_pred HHHhhcCChhh
Q 008727 443 EACCREDLLRP 453 (556)
Q Consensus 443 ~~~~~~~~~~~ 453 (556)
..+++..+|.+
T Consensus 348 ~WlskAtNWaK 358 (929)
T KOG2062|consen 348 DWLSKATNWAK 358 (929)
T ss_pred hHHhhcchHhh
No 441
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.51 E-value=4.9e+02 Score=27.59 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC---CC----------CCHHHHHHHHHHHH
Q 008727 416 LREAYGVIQEMK-RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG---CS----------GNLKTYNILISKFS 481 (556)
Q Consensus 416 ~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~----------~~~~~~~~li~~~~ 481 (556)
.++....+.... ..|+..+......++... .|++..+..+++++...| +. .+......|++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 455555555444 457777777777776655 589999999998876532 11 12222333444443
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p 503 (556)
. ++...++.+++++...|+.+
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCH
Confidence 3 66677777777777666543
No 442
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.83 E-value=1.9e+02 Score=22.61 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-AYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 283 (556)
++++.+.|.....- ...+.-..+|-..++.+ ++..++|..|..+|+-.... -|......+-..|++.+|.++
T Consensus 49 Lerc~~~f~~~~~Y-knD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 49 LERCIRYFEDDERY-KNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHhhhhhhh-cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HH
Q 008727 284 LK 285 (556)
Q Consensus 284 ~~ 285 (556)
|+
T Consensus 122 y~ 123 (125)
T smart00777 122 YQ 123 (125)
T ss_pred HH
No 443
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.49 E-value=1.7e+02 Score=23.66 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=43.2
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhc-CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCRE-DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (556)
-+.+.+.|++++.. =..++..+... +..-.|.++++.+.+.+...+..|.---+..+...|-+.
T Consensus 5 ~~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 5 NTALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34566778775543 33455555554 568899999999998876667776656667777776543
No 444
>PRK10941 hypothetical protein; Provisional
Probab=38.32 E-value=3.1e+02 Score=24.96 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=30.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
.+-.+|.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344555666666666666665554433 3333333344455556666665555555443
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.12 E-value=95 Score=32.96 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=49.5
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH
Q 008727 127 PSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG 206 (556)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 206 (556)
..+..+|+++.|++.-.++. +..+|..|.......|+.+-|+..|++.+... .|--.|.-.|+.+
T Consensus 651 ~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe---------kLsfLYliTgn~e 715 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE---------KLSFLYLITGNLE 715 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh---------heeEEEEEeCCHH
Confidence 44567788888887766552 66788888888888888888888888775532 1222344455665
Q ss_pred HHHHHHHHHHh
Q 008727 207 QVLSMLDEVRK 217 (556)
Q Consensus 207 ~a~~~~~~~~~ 217 (556)
+..++.+....
T Consensus 716 KL~Km~~iae~ 726 (1202)
T KOG0292|consen 716 KLSKMMKIAEI 726 (1202)
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.94 E-value=2.3e+02 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008727 350 IVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (556)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 393 (556)
.++++.+.+.++.|.-+.|..+.-.+...=.+..++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34455555555555555555555555555555555555555544
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.65 E-value=1.8e+02 Score=21.98 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
..++|..+.+-+...+- -...+--+-+..+.+.|++++| +..-. ....||...|-.|- -.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35666666666665431 2222222334456677777777 11111 12456666664442 346777777777777
Q ss_pred HhhhCC
Q 008727 530 KSVNHD 535 (556)
Q Consensus 530 ~m~~~~ 535 (556)
++-.+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 448
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.47 E-value=2.1e+02 Score=22.76 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=37.4
Q ss_pred cChhhHHHHHHHHHhhC---cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 187 FSTIGFGVFIWKFCENA---KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 187 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
++..+--.+.+++.+.. +..+.+.+++.+.+. ............|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 33444444555555553 445556666666652 111111222233556777888888888888777765
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.18 E-value=2.8e+02 Score=24.81 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRI----RE-CKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3466677777777777777777632 11 1223334444555555556555554443
No 450
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.00 E-value=4.9e+02 Score=26.90 Aligned_cols=234 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008727 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 391 (556)
.+...++.+.....--.+....+..++..++.-+.+.-.+++.++.. .. ......++++....|-.....-+.+.+
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i 366 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWI 366 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred HhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------HhHHHHHHHHHhhcCC-------hhhHHH
Q 008727 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--------VSFYNSLMEACCREDL-------LRPAKK 456 (556)
Q Consensus 392 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~~~~~~~-------~~~a~~ 456 (556)
....+.+....-........-..--.+.++.+.++.+....+. ..+|..+++-+|.... -+-...
T Consensus 367 ~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~ 446 (574)
T smart00638 367 KNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY 446 (574)
T ss_pred HcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--CCHHHHHHHHHHhhhC
Q 008727 457 LWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--TNLQAAFEVFNKSVNH 534 (556)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~ 534 (556)
+.+.+.+.--.-|..--...|.++...|. ..+...+..........+...-...+.++.+. ...+++..++-.....
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGH-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCC-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Q ss_pred CCcccHHHHHHHHHHH
Q 008727 535 DVMLARSILSTFMISL 550 (556)
Q Consensus 535 ~~~~~~~~~~~l~~~~ 550 (556)
.-.+...-..+++..+
T Consensus 526 ~~e~~EvRiaA~~~lm 541 (574)
T smart00638 526 RAEPPEVRMAAVLVLM 541 (574)
T ss_pred CCCChHHHHHHHHHHH
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.98 E-value=72 Score=21.43 Aligned_cols=49 Identities=8% Similarity=0.158 Sum_probs=25.5
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
|....++.++..+++..-.++++..+.+....|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444555566666555556666666666665554 244455444444443
No 452
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.97 E-value=1.2e+02 Score=21.09 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 376 (556)
.+.+..+...++.+.+.+++++..+.|..|.......+.-+..
T Consensus 5 ~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 5 IERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445555666777778888888777777666655555554443
No 453
>PRK09857 putative transposase; Provisional
Probab=36.93 E-value=2.7e+02 Score=25.74 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
..+++.....++.++..++++.+.+. .+......-++..-+.+.|.-+++.++.++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555443 122222333344444444544556666666666665543
No 454
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.80 E-value=4.7e+02 Score=26.64 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH-hhCcHHHHHHHHHHHHh
Q 008727 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 217 (556)
|+.+.+.|.+..|.+.-.-+.+.+..-|......+|+.|+ +..+++-.+++++....
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3445566777777777776666654445566666666654 44666666666666643
No 455
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.20 E-value=95 Score=23.61 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 134 (556)
++..+...+..-.|.++++.+.+.+...+..|-...++.+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444455555556655555544444444444455554443
No 456
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.65 E-value=3.3e+02 Score=27.09 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHh--------HHHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEI--------CNSLLA 162 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~ 162 (556)
++.+....+...+..-.+...... .-++...-.--..+.-.|++.+|.+++...--...+-...+ ||.|..
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHhcCCHhHHHHHHHHHHh-------CCCccCh-----------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC
Q 008727 163 VLASDGYIDNALKMFDEMSH-------RGVEFST-----------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN 224 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~-------~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 224 (556)
.+.+.|.+..+..+|....+ .|..|.. .+||.=+ .|...|++-.|.+.|...... ...
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v---fh~ 367 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV---FHR 367 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH---Hhc
Q ss_pred chhhHHHHHHHHh
Q 008727 225 GSVIAVLIIHGFC 237 (556)
Q Consensus 225 ~~~~~~~li~~~~ 237 (556)
++..|-.|..+|.
T Consensus 368 nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NPRLWLRLAECCI 380 (696)
T ss_pred CcHHHHHHHHHHH
No 457
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.64 E-value=1.5e+02 Score=20.85 Aligned_cols=33 Identities=3% Similarity=0.044 Sum_probs=21.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (556)
++.+.+..--++|+++++.+.++| ..+...-+.
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 555666667777888888777777 445444333
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.51 E-value=1.1e+02 Score=23.13 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCC
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG--EIEGALRLFHNMLEKGV 501 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~ 501 (556)
..++.-|...++.++|..-+.++.-. .-.......++..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45566777778888888888776421 111223334444444432 22345566666666543
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=3.5e+02 Score=24.70 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHH----HHHHcCCCCCCHHHHH
Q 008727 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTN-------DYREFILGLIVERRICEAKELG----EVIVSGKFTIDDDVLN 335 (556)
Q Consensus 267 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~ 335 (556)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|...|+.....+.. +.|.+-..+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhcCChHHHHH----HHHHHHhCCCCccHh-hH
Q 008727 336 ALIGS--VSSIDPRSAIVFFNFMIEKGRVPTLSTLSN-----LSKNLCKRNKSDELVE----VYKVLSANDYFTDME-SY 403 (556)
Q Consensus 336 ~l~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----ll~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~-~~ 403 (556)
+++.. +....++.-+++.....+.-.+-....... ++..+.+.|.+.+|.. ++.++.+.+-+|+.. .+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHhHHHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 008727 404 NVMVSFLCTSGRLREAYGVIQEMKRKG----LDPDVSFYNSLMEA--CCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (556)
Q Consensus 404 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (556)
-.=-.+|-...++.++..-+....... ++|-...---++++ .|...++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 008727 478 SKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|.......+|...++-|.
T Consensus 235 -gft~l~~d~kAc~sLkYml 253 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYML 253 (421)
T ss_pred -ccccccchHHHHHHHHHHH
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=3.6e+02 Score=24.69 Aligned_cols=70 Identities=17% Similarity=0.055 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhh----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRI----RECKPDFIAYRIVA-EEFKLMGSVFEREVVLKKKRKLGVAPR 295 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (556)
..++..+...|++.++.+.+.+...+..+ .|.+.|+....+-+ -.|....-+++.++..+.|.+.|-..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 55666788888888888888877766543 35555554332222 223333445666777777777765543
No 461
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.83 E-value=4.8e+02 Score=26.10 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=43.5
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRG-VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
|+..|..-+..+.+.+.+.+...+|..|.... -.||...+.+ ..-|-..-.++.|..+|....+. .|+++..|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~---npdsp~Lw~ 178 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRF---NPDSPKLWK 178 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhc---CCCChHHHH
Confidence 77777777777777777777777777777643 2233322221 22333334477777777776665 444444443
No 462
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.83 E-value=4.5e+02 Score=25.79 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHhc---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008727 232 IIHGFCK---GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (556)
Q Consensus 232 li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (556)
++.++.+ .++.+.|+..+..|.+.|..|....-..++.++-..
T Consensus 233 ~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 233 LISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4444443 467888888888888877776655555444444333
No 463
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.63 E-value=3.3e+02 Score=24.15 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=19.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCC
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECK 258 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~ 258 (556)
+...-+..+++..|.++|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455677888999999888765444
No 464
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.16 E-value=77 Score=16.71 Aligned_cols=13 Identities=0% Similarity=0.161 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q 008727 205 LGQVLSMLDEVRK 217 (556)
Q Consensus 205 ~~~a~~~~~~~~~ 217 (556)
.+.+..+|+.+..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.90 E-value=5.7e+02 Score=26.66 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE------EAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
.|+.+|...|++-.+.++++.+.........-...+|..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67778888888888888888777653223333445666777777777643 2333333333 33466677666
Q ss_pred HHHHHh
Q 008727 268 AEEFKL 273 (556)
Q Consensus 268 l~~~~~ 273 (556)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 466
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.80 E-value=9.9e+02 Score=29.48 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..+|-......-+.|+++.|...+-+..+.+ . +..+-...+-....|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4567777777778999999998887777665 2 3445556677888999999999999887544
No 467
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.69 E-value=5.8e+02 Score=26.71 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=44.2
Q ss_pred hCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-------------CCChHhHHHHHHHHHhcCCHhHHHHHHH
Q 008727 112 VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE-------------DIGPEICNSLLAVLASDGYIDNALKMFD 178 (556)
Q Consensus 112 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (556)
+.|+..+......++. ...|+...++.++++....+. ..+......++.++.. |+...++++++
T Consensus 198 ~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 3455555555555554 234666666666655432221 1234445556665554 78889999999
Q ss_pred HHHhCCCccC
Q 008727 179 EMSHRGVEFS 188 (556)
Q Consensus 179 ~m~~~~~~~~ 188 (556)
++.+.|..+.
T Consensus 275 ~l~~~G~~~~ 284 (618)
T PRK14951 275 ELRLNGLSAA 284 (618)
T ss_pred HHHHcCCCHH
Confidence 9988886544
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.59 E-value=6.7e+02 Score=27.44 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCH--HHHHHHHHHHHcCCCCCCHHH----
Q 008727 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT---NDYREFILGLIVERRI--CEAKELGEVIVSGKFTIDDDV---- 333 (556)
Q Consensus 263 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~---- 333 (556)
-|..|+..|...|..++|++++.+.....-.-|. ..+..++.-+.+.+.. +...+.-+...+..+.....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4677777888888888888888777653210010 1122233333333332 444444444443322211111
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008727 334 ---------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK 377 (556)
Q Consensus 334 ---------~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 377 (556)
-..++..+.....+-++..++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 12233444455666677777777766666666666666666653
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.35 E-value=5e+02 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=15.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHh
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666666777777776666664
No 470
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.09 E-value=6.2e+02 Score=26.86 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh----------hHHHHHHHHHhc
Q 008727 347 RSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME----------SYNVMVSFLCTS 413 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~ 413 (556)
++--..+.+|...-..|+ ..+...++-.|-...+++..+++.+.+... ||.. .|.-.+.---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh---------hcCChhhHHHHHHHHHHcCCCCC---------------
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC---------REDLLRPAKKLWDQMFASGCSGN--------------- 469 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~--------------- 469 (556)
|+-++|+...-.+.++.-..-+..|....+.|- ..+..+.|.+.|++.-+ +.|+
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Q ss_pred ---------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 470 ---------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 470 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
...--.|-+.+.+.|..++-.++|+-.. .+.+-.-++++.+|++.-+.|.+.++..|
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhccCCcee
No 471
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.60 E-value=2.6e+02 Score=24.63 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..+.++.+.+.+++.+....- +-....|-.+...-.+.|+++.|.+.|++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345666777777777776531 334555666666666777777777777777654
No 472
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.45 E-value=6.1e+02 Score=26.57 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHH-HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC-------------CCHHHHHHHHHHHH
Q 008727 416 LREAYGVIQE-MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS-------------GNLKTYNILISKFS 481 (556)
Q Consensus 416 ~~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~li~~~~ 481 (556)
.++..+.+.. +.+.|+..+......++.. ..|++..+..+++++...|-. ++......++.++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555544 3456777777766666653 358888888888776543211 11222223333333
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p 503 (556)
. |+...++++++++.+.|..|
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCH
Confidence 3 56666666666666665543
No 473
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.35 E-value=2e+02 Score=20.87 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=13.6
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 147 (556)
|......+...+...|++++|++.+-.+.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444455555555555555544443
No 474
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.30 E-value=5.2e+02 Score=25.77 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=14.9
Q ss_pred HHccCCHHHHHHHHHHhhhCCC
Q 008727 515 LCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|.-.|.-.++-..|++|++.|-
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCC
Confidence 3445566667778888888773
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.27 E-value=90 Score=24.00 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344455555445555666666655554445444444444444444
No 476
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.08 E-value=5.6e+02 Score=26.04 Aligned_cols=73 Identities=10% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC----------------CCChHhHHHHHHHHHhcCCHhHHHHH
Q 008727 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE----------------DIGPEICNSLLAVLASDGYIDNALKM 176 (556)
Q Consensus 113 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (556)
.|+..+......++.. ..|+...|...++++...+. ..+....-.|+.+.. .|+.++|+.+
T Consensus 203 egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~-~~d~~~Al~~ 279 (507)
T PRK06645 203 ENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII-HRETEKAINL 279 (507)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3444455544444432 34566666666665532210 112233334444443 4888889999
Q ss_pred HHHHHhCCCccC
Q 008727 177 FDEMSHRGVEFS 188 (556)
Q Consensus 177 ~~~m~~~~~~~~ 188 (556)
++++...|..|.
T Consensus 280 l~~L~~~g~~~~ 291 (507)
T PRK06645 280 INKLYGSSVNLE 291 (507)
T ss_pred HHHHHHcCCCHH
Confidence 998888886543
No 477
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=32.04 E-value=6.7e+02 Score=26.93 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCCC
Q 008727 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK-----SDELVEVYKVLSANDYF 397 (556)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 397 (556)
.......+++..+..+|++.|+..+..|.+.|..|....-..++.+.-..|. ...|...++-....|.+
T Consensus 257 ~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 257 AHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 3455666777777778888999999999888877654444433333333342 22233444444455543
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.58 E-value=2.3e+02 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=10.2
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~ 391 (556)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334455555555555555543
No 479
>PRK09857 putative transposase; Provisional
Probab=31.41 E-value=3.1e+02 Score=25.31 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCccc
Q 008727 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (556)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 539 (556)
+..++.-..+.|+.++..++++...+. .........++..-+...|.-+++.++.++|...|...+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555555667777777777777655 333444555666777777877889999999999887644
No 480
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.12 E-value=77 Score=29.53 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 491 (556)
.|.+++|++.|...++.+. |....|..-.+++.+.+.+..|++=++...+. .||.. -|-.--.+-...|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 4556666666666665532 24445555555666666666666666655552 33321 22222223334566666666
Q ss_pred HHHHHHHCCCCCC
Q 008727 492 LFHNMLEKGVAPD 504 (556)
Q Consensus 492 ~~~~m~~~g~~p~ 504 (556)
.|....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666666655443
No 481
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.96 E-value=5.5e+02 Score=25.63 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=107.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCChh---hHHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIA--YRIVAEE-----FKLMGSVFEREVVLKKKRKLGVAPRTN---DYRE 301 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 301 (556)
.+...++.|+.+- ++.+.+.|..|+... ....+.. ....|+. ++.+.+.+.|..++.. ..+.
T Consensus 38 ~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCch
Confidence 3445566777654 444455676665432 1223333 3444443 3445555666655332 2333
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHH
Q 008727 302 FILGLI-VERRICEAKELGEVIVSGKFTID---DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL--SNLSKNL 375 (556)
Q Consensus 302 ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~ 375 (556)
+..+.. ..|+.+-...+ .+.|..++ ..-.+.+..+...+. .-.++++.+.+.|..++...- .+.+...
T Consensus 110 L~~A~~~~~~~~~iv~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A 183 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYL----LDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIA 183 (480)
T ss_pred hhHHHhcccChHHHHHHH----HHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence 333332 55655544443 34444432 222444544454442 123445556666765543221 2234445
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDME--------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS---FYNSLMEA 444 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~ 444 (556)
+..|+.+-+.-+ .+.|..++.. .+...+...+..|. ...++.+.+.+.|..++.. -.+.+. .
T Consensus 184 ~~~~~~~iv~~L----l~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~-~ 256 (480)
T PHA03100 184 VEKGNIDVIKFL----LDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH-Y 256 (480)
T ss_pred HHhCCHHHHHHH----HHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH-H
Confidence 566665544443 3444433322 11233333344444 1123444555566554422 233333 3
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKT---YNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
.+..|+. ++++.+.+.|..++... .+.+ ...++.++. ++++.+.+.|..
T Consensus 257 A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~----~iv~~Ll~~g~~ 308 (480)
T PHA03100 257 AVYNNNP----EFVKYLLDLGANPNLVNKYGDTPL-HIAILNNNK----EIFKLLLNNGPS 308 (480)
T ss_pred HHHcCCH----HHHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCH----HHHHHHHhcCCC
Confidence 3344553 34445555655444321 1222 223334443 455555666643
No 482
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.70 E-value=1.4e+02 Score=20.58 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+.|..++..+.... +.++..||++...+.+
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 33444444443322 3344445554444433
No 483
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.15 E-value=5.3e+02 Score=25.19 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=54.0
Q ss_pred HHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHHHH
Q 008727 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK--------FSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 427 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~ 498 (556)
..+.+.||..+.|-+...++..-..+....+|+-..+.+ .|=...+-.||-. -.+...-+++.++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 345677888888877777777777788888888877764 4444333333211 1234456778888888765
Q ss_pred C-CCCCCHhhHHHHHHHHH
Q 008727 499 K-GVAPDATTYTSLLEGLC 516 (556)
Q Consensus 499 ~-g~~p~~~~~~~l~~~~~ 516 (556)
. .+. |..-+-+|...|+
T Consensus 254 ~L~~e-DvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVE-DVPDFFSLAQYYS 271 (669)
T ss_pred hcccc-cchhHHHHHHHHh
Confidence 4 222 4555555555554
No 484
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=30.13 E-value=1e+02 Score=23.86 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 523 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
.+.++++.+.+. ......+..+||.-++|.|+
T Consensus 22 t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~ 53 (123)
T COG3682 22 TVREIIEELPAD-REWSYSTVKTLLNRLVKKGL 53 (123)
T ss_pred cHHHHHHHHhhc-ccccHHHHHHHHHHHHhccc
Confidence 344444443333 44455555555555555554
No 485
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.92 E-value=4.7e+02 Score=24.46 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=9.8
Q ss_pred hhCcHHHHHHHHHHHHhc
Q 008727 201 ENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~ 218 (556)
+.|+..+|.+.|+.+.+.
T Consensus 287 klGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HhhhHHHHHHHHHHHhhh
Confidence 345566666655555443
No 486
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.91 E-value=5.2e+02 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLS--TLSNLSKNLC--KRNKSDELVEVYKVLSAN 394 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 394 (556)
+......+.++++..|.++|..+.+. ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44555667778888888888888776 444443 3444444443 355677777777776653
No 487
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.80 E-value=4.9e+02 Score=24.64 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDV----SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
-.+++..++.+++.. -|+. .-|..+.+.....|.++..+.+|++++..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456888899988886 5665 4678888888899999999999999999998887777766666654
No 488
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=29.71 E-value=1.1e+02 Score=20.60 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET 519 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 519 (556)
+..+...+.+-.+..+.+.+...|...+..+....+.+.-+.|
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444444444444444
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.68 E-value=2.7e+02 Score=21.71 Aligned_cols=43 Identities=5% Similarity=-0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
.+.++|..|..+ +........|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444 3334444444444444555555555555544
No 490
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.68 E-value=4.7e+02 Score=24.47 Aligned_cols=98 Identities=18% Similarity=0.041 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCChhh-H
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRI----RECKPDFIAYRIVAEEF-KLMGSVFEREVVLKKKRKLGVAPRTND-Y 299 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 299 (556)
..++......||+-|+-+.|++.+..-.+ .|.+.|+..+..-+..+ ....-+.+-++..+.+.+.|-..+..- +
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555677888999999999888876543 46677777666544443 333334555555566666665544331 1
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHH
Q 008727 300 REFIL-GLIVERRICEAKELGEVIV 323 (556)
Q Consensus 300 ~~ll~-~~~~~~~~~~a~~~~~~~~ 323 (556)
...-. -+....++.+|..+|-...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 11111 1223345566666555544
No 491
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.57 E-value=4.4e+02 Score=25.72 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 008727 192 FGVFIWKFCENAKLGQVLSMLDEVRKRE-----NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
...|++.++-.||+..|+++++.+.-.. .+.+....++-.+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666665553210 1111222333445555666666666666666543
No 492
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.96 E-value=1.5e+02 Score=29.11 Aligned_cols=103 Identities=12% Similarity=-0.009 Sum_probs=61.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCccHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhcC
Q 008727 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMES-YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCRED 449 (556)
Q Consensus 372 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 449 (556)
.+.+.+.+.++.|..++.++.+.. |+... |..=..++.+.+++..|+.=+...++.. |+ ...|---..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 445566778888888888877764 33333 3333367777788888877777666653 22 223333334445555
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666666655 466666555555444
No 493
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.89 E-value=45 Score=30.94 Aligned_cols=85 Identities=9% Similarity=-0.089 Sum_probs=41.7
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh-hhHHHHHHHHHhhCcHHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST-IGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~ 209 (556)
..|.++.|++.|...+... ++....|..-.+++.+.++...|++=++...+.+ ||. .-|-.--.+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 3455666666666555543 2244455555555666666666655555554432 221 11111112222346666666
Q ss_pred HHHHHHHhc
Q 008727 210 SMLDEVRKR 218 (556)
Q Consensus 210 ~~~~~~~~~ 218 (556)
+.|....+.
T Consensus 203 ~dl~~a~kl 211 (377)
T KOG1308|consen 203 HDLALACKL 211 (377)
T ss_pred HHHHHHHhc
Confidence 666665554
No 494
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.47 E-value=8.6e+02 Score=27.10 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=26.5
Q ss_pred HhhhhhccChhHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHh-cCChhHHHHHHHHhHh
Q 008727 55 VINPYLLTHHSLALGFFNWASQQPN--FTHSPLSYHSILKSLSL-SRQINAIDSVLKQVKV 112 (556)
Q Consensus 55 ~l~~~~~~~~~~a~~~f~~~~~~~~--~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 112 (556)
+-+.+...++.+|+.+.+.-+-.-+ +.+++..|-.=+..+.+ -++.+-.-.++..+.+
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ 761 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRN 761 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 3333434567777666554322222 23455555444544443 3444444444444443
No 495
>PHA01351 putative minor structural protein
Probab=28.20 E-value=7.1e+02 Score=26.03 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhhhhhcc--ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHH
Q 008727 34 LEQTLHQLGLRDSLSPSLVARVINPYLLT--HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI--NAIDSVLKQ 109 (556)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~ 109 (556)
+..+|+..| ||-++-..+....+.+.+. -|...-.+|+.+..++..--+-...-..++..++.|-+ +++.+.|
T Consensus 430 lsralsnfg-rpyid~~yl~st~~~lfkel~~p~~v~~~f~~mi~qsqliq~nqll~~~l~sl~skGi~DqkkIke~L-- 506 (1070)
T PHA01351 430 LSRALSNFG-RPYLDFKYLDSTIAKLFKDLGYPEEVRTVFDTMITQSQLIQTNQLLLRQLQQIVSLGIFDQKKIKEEL-- 506 (1070)
T ss_pred HHHHHHhCC-CcceehHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccccHHHHHHHH--
Confidence 334555554 4445555555544444432 24445557777766543222222223344555666744 3444433
Q ss_pred hHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHH---------------HHhCCCCCChHhHHHHHHHHHhcCCHhHHH
Q 008727 110 VKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNE---------------VKFNCEDIGPEICNSLLAVLASDGYIDNAL 174 (556)
Q Consensus 110 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 174 (556)
+..| .+...-..++..+.+--+.+..+++++. +.+.|+ +...-+.++.-+....-...-.
T Consensus 507 -Ka~g--fnks~~d~~L~~~~n~a~iesqIK~LQ~qL~nF~IS~QD~EkELKkLg~--s~alIqaiI~EyftepL~KlQL 581 (1070)
T PHA01351 507 -KANK--FNEQVALQILESELQFAQLQNQLKEYQFKLNNFLISPQDLEKDLKHLGF--DSAIISALIYENQVEQLIKFQL 581 (1070)
T ss_pred -HhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4555666666666666666666666652 223333 4444455544444333333444
Q ss_pred HHHHHHHhCC
Q 008727 175 KMFDEMSHRG 184 (556)
Q Consensus 175 ~~~~~m~~~~ 184 (556)
.+++++.+.|
T Consensus 582 nvyEsLakKG 591 (1070)
T PHA01351 582 NNIESLAKKG 591 (1070)
T ss_pred HHHHHHHHhc
Confidence 4555554444
No 496
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.71 E-value=1.7e+02 Score=28.67 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=20.7
Q ss_pred hcCCHhHHHHHHHHHHhCCCccChhh-HHHHHHHHHhhCcHHHHHHHHHHHHh
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFSTIG-FGVFIWKFCENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~ 217 (556)
+.+.++.|..++.+.++.. |+... |..-..++.+.+++..|+.=+....+
T Consensus 16 ~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 3344455555555544432 22221 22222344444555555444444443
No 497
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.67 E-value=4.4e+02 Score=23.48 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc
Q 008727 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219 (556)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 219 (556)
..++++.+.|.. |....+++.|...|.+.+..+..+-.+--+-.+ .+.+..+++.+.+--....+.
T Consensus 8 ~~a~qlkE~gnk------------~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnral-chlk~~~~~~v~~dcrralql- 73 (284)
T KOG4642|consen 8 ESAEQLKEQGNK------------CFIPKRYDDAIDCYSRAICINPTVASYYTNRAL-CHLKLKHWEPVEEDCRRALQL- 73 (284)
T ss_pred hHHHHHHhcccc------------ccchhhhchHHHHHHHHHhcCCCcchhhhhHHH-HHHHhhhhhhhhhhHHHHHhc-
Q ss_pred CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL----RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
.++.......+..++.....+++|+..+.+. +...+.|.......|..+--+.-...+...+.++.
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
No 498
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.64 E-value=6.6e+02 Score=25.51 Aligned_cols=47 Identities=9% Similarity=-0.080 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 008727 66 LALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK 114 (556)
Q Consensus 66 ~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 114 (556)
.-..++.....+.++..+...+..+. -...|....+..+++++...+
T Consensus 182 ~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 182 EIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHcc
Confidence 33455566667777777777765553 345677788888888888765
No 499
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.49 E-value=1.7e+02 Score=18.65 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008727 409 FLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~ 428 (556)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444444
No 500
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=27.31 E-value=6.2e+02 Score=25.08 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=51.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCC--CchhhHHHHHHHHhccCCH
Q 008727 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI--NGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~ 242 (556)
+..|.++-+..+++.- ..+.-+..|-+.=+.+.|-.|+++-...+++. |..+ .+..-.+.|+-++. .|+.
T Consensus 92 saAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~-----gad~~IanrhGhTcLmIa~y-kGh~ 163 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEH-----GADPEIANRHGHTCLMIACY-KGHV 163 (615)
T ss_pred hccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHc-----CCCCcccccCCCeeEEeeec-cCch
Confidence 4445555444443332 22333344444556667777777666555532 2222 11222222222222 3444
Q ss_pred HHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAY--RIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~ 284 (556)
+-+ +.+.+.|..++..++ |+.+.-|+..|.++-...++
T Consensus 164 ~I~----qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 164 DIA----QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred HHH----HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence 433 344455556665554 56777777777765444333
Done!