Query 008727
Match_columns 556
No_of_seqs 662 out of 3231
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 10:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-38 5.9E-43 326.2 45.5 449 82-546 82-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.7E-36 1.3E-40 308.9 40.0 442 96-554 65-564 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.8E-32 1.7E-36 266.2 24.2 205 349-553 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.8E-31 6.1E-36 262.1 21.6 213 246-483 10-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2E-26 7E-31 222.9 47.0 361 91-497 6-366 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-26 8.7E-31 222.2 45.9 378 126-551 6-384 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.4E-27 204.0 40.9 409 84-536 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.7E-22 9.1E-27 201.7 37.9 424 119-554 6-463 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.7E-21 1.3E-25 194.5 41.3 439 84-537 25-494 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.4E-21 1.5E-25 189.4 40.3 207 82-318 24-233 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.9E-21 1.7E-25 189.0 39.2 302 58-429 36-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.6E-20 1.9E-24 185.8 40.4 468 54-555 31-536 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.8E-17 6.3E-22 157.9 40.2 327 83-463 2-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-17 9.4E-22 156.7 41.4 315 154-536 3-337 (359)
15 2ooe_A Cleavage stimulation fa 99.9 4.4E-17 1.5E-21 163.9 44.4 423 82-536 11-494 (530)
16 2xm6_A Protein corresponding t 99.8 7.6E-16 2.6E-20 153.3 49.8 358 83-502 38-435 (490)
17 2xm6_A Protein corresponding t 99.8 2E-15 6.7E-20 150.3 50.0 369 104-537 27-435 (490)
18 3hym_B Cell division cycle pro 99.8 5.5E-17 1.9E-21 152.7 32.2 289 153-520 21-320 (330)
19 3hym_B Cell division cycle pro 99.8 1.1E-16 3.7E-21 150.7 33.0 201 115-322 18-219 (330)
20 2ooe_A Cleavage stimulation fa 99.8 6.1E-15 2.1E-19 148.3 47.2 416 48-499 12-492 (530)
21 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.3E-22 159.1 25.7 304 167-531 38-356 (368)
22 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-19 4.2E-24 183.0 10.6 115 366-480 128-246 (1134)
23 3spa_A Mtrpol, DNA-directed RN 99.8 7.7E-19 2.6E-23 177.2 13.1 135 399-538 126-264 (1134)
24 1xi4_A Clathrin heavy chain; a 99.8 5.2E-14 1.8E-18 147.1 49.0 384 45-490 981-1375(1630)
25 1fch_A Peroxisomal targeting s 99.8 4.1E-17 1.4E-21 156.2 23.9 188 364-554 131-344 (368)
26 4eqf_A PEX5-related protein; a 99.8 6.3E-17 2.2E-21 154.7 22.2 276 188-530 64-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 1.4E-16 4.9E-21 149.0 23.6 280 62-386 17-303 (449)
28 1xi4_A Clathrin heavy chain; a 99.8 6.1E-14 2.1E-18 146.5 45.0 384 82-526 983-1376(1630)
29 4eqf_A PEX5-related protein; a 99.7 1.5E-16 5E-21 152.2 21.6 267 153-495 64-352 (365)
30 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.2E-21 149.5 20.0 237 96-376 15-252 (449)
31 3cv0_A Peroxisome targeting si 99.7 7.8E-16 2.7E-20 144.6 26.0 278 191-532 23-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 3.9E-15 1.3E-19 136.5 25.9 150 130-290 10-159 (291)
33 4g1t_A Interferon-induced prot 99.7 4.6E-14 1.6E-18 139.9 34.9 386 82-537 49-462 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.1E-14 3.9E-19 136.6 28.7 98 85-184 22-119 (327)
35 3mkr_A Coatomer subunit epsilo 99.7 1E-14 3.5E-19 133.7 25.6 251 198-499 8-264 (291)
36 4g1t_A Interferon-induced prot 99.7 1.4E-13 4.7E-18 136.4 35.1 379 61-508 64-469 (472)
37 2pl2_A Hypothetical conserved 99.6 2.1E-13 7.1E-18 119.4 21.8 209 82-322 3-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 4.1E-13 1.4E-17 121.1 24.5 226 84-325 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 6.4E-13 2.2E-17 119.8 25.1 157 367-535 81-237 (258)
40 2pl2_A Hypothetical conserved 99.6 1.8E-13 6.2E-18 119.7 20.7 194 51-253 8-212 (217)
41 4e6h_A MRNA 3'-END-processing 99.6 1.2E-10 4.3E-15 117.7 43.8 449 69-550 54-584 (679)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-13 8.7E-18 132.9 23.3 377 90-532 9-419 (452)
43 3e4b_A ALGK; tetratricopeptide 99.6 6.7E-13 2.3E-17 129.9 25.1 373 59-498 14-420 (452)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.7E-17 116.3 25.4 201 84-290 37-238 (252)
45 2vq2_A PILW, putative fimbrial 99.6 2.2E-12 7.6E-17 113.5 24.7 203 83-290 7-211 (225)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.8E-13 2E-17 121.4 21.5 246 62-319 19-269 (275)
47 3u4t_A TPR repeat-containing p 99.5 1.7E-12 5.7E-17 118.2 24.1 238 263-536 5-252 (272)
48 1ouv_A Conserved hypothetical 99.5 1.5E-11 5.2E-16 111.9 30.4 226 260-537 5-254 (273)
49 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.3E-17 116.8 23.3 236 85-326 4-251 (272)
50 1ouv_A Conserved hypothetical 99.5 2.7E-11 9.1E-16 110.3 29.9 224 83-326 5-252 (273)
51 2h6f_A Protein farnesyltransfe 99.5 6.1E-12 2.1E-16 119.2 25.8 234 84-326 97-349 (382)
52 2ho1_A Type 4 fimbrial biogene 99.5 8.1E-12 2.8E-16 112.2 25.4 193 341-537 48-241 (252)
53 2h6f_A Protein farnesyltransfe 99.5 6.6E-12 2.2E-16 119.0 25.5 234 262-536 98-350 (382)
54 2vq2_A PILW, putative fimbrial 99.5 6.1E-12 2.1E-16 110.7 23.9 204 117-324 6-210 (225)
55 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.7E-17 116.5 19.5 202 82-290 21-222 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-12 9.1E-17 117.0 21.6 182 133-322 19-203 (275)
57 2q7f_A YRRB protein; TPR, prot 99.5 3E-12 1E-16 114.3 20.5 169 365-537 57-225 (243)
58 3vtx_A MAMA; tetratricopeptide 99.5 1E-11 3.5E-16 105.5 21.9 169 364-536 4-172 (184)
59 4e6h_A MRNA 3'-END-processing 99.5 3.4E-09 1.2E-13 107.3 41.6 438 47-515 64-584 (679)
60 3sf4_A G-protein-signaling mod 99.4 9.5E-12 3.3E-16 120.4 21.8 132 402-533 189-335 (406)
61 4a1s_A PINS, partner of inscut 99.4 5.8E-12 2E-16 122.2 18.9 134 366-499 224-372 (411)
62 3sf4_A G-protein-signaling mod 99.4 9.6E-12 3.3E-16 120.4 20.3 99 83-182 8-115 (406)
63 4a1s_A PINS, partner of inscut 99.4 9.2E-12 3.1E-16 120.8 19.3 280 226-536 48-374 (411)
64 2ond_A Cleavage stimulation fa 99.4 1.4E-10 5E-15 107.3 26.5 219 65-290 33-270 (308)
65 3vtx_A MAMA; tetratricopeptide 99.4 3.7E-11 1.3E-15 102.0 20.5 167 83-255 4-170 (184)
66 2ond_A Cleavage stimulation fa 99.4 3.1E-10 1.1E-14 105.1 27.4 219 101-327 33-272 (308)
67 3ro2_A PINS homolog, G-protein 99.4 3.5E-11 1.2E-15 112.9 21.0 155 381-535 159-333 (338)
68 3ulq_A Response regulator aspa 99.4 5.2E-11 1.8E-15 114.3 22.2 232 269-533 111-367 (383)
69 3ro2_A PINS homolog, G-protein 99.4 3.6E-11 1.2E-15 112.9 20.7 134 366-499 184-332 (338)
70 3nf1_A KLC 1, kinesin light ch 99.4 6.2E-12 2.1E-16 116.8 15.0 248 223-498 24-306 (311)
71 3ulq_A Response regulator aspa 99.4 2.9E-10 9.9E-15 109.1 27.1 235 232-499 109-368 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 3.7E-11 1.3E-15 111.5 19.0 177 83-289 26-223 (311)
73 4abn_A Tetratricopeptide repea 99.4 4.9E-11 1.7E-15 117.4 20.7 214 99-320 83-316 (474)
74 4abn_A Tetratricopeptide repea 99.3 7.7E-11 2.6E-15 116.0 20.3 212 65-286 85-317 (474)
75 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 98.1 18.9 167 366-536 9-175 (186)
76 1hz4_A MALT regulatory protein 99.3 3E-09 1E-13 101.5 27.6 295 234-536 22-351 (373)
77 1hz4_A MALT regulatory protein 99.3 3.3E-09 1.1E-13 101.2 27.3 295 163-499 23-349 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 5.7E-10 2E-14 94.5 19.3 161 86-252 10-170 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.2 3E-10 1E-14 116.4 19.9 165 365-533 9-173 (723)
80 3q15_A PSP28, response regulat 99.2 4.2E-09 1.4E-13 100.7 26.4 188 342-533 153-364 (378)
81 3q15_A PSP28, response regulat 99.2 4.3E-09 1.5E-13 100.6 26.4 165 159-323 106-288 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.2 4.5E-10 1.5E-14 115.1 19.1 166 83-254 8-173 (723)
83 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.5E-14 95.4 20.2 193 333-537 10-212 (228)
84 3edt_B KLC 2, kinesin light ch 99.2 3.1E-10 1.1E-14 103.5 14.2 191 343-534 56-281 (283)
85 4i17_A Hypothetical protein; T 99.2 4.1E-09 1.4E-13 92.7 20.0 196 82-290 5-209 (228)
86 3mv2_B Coatomer subunit epsilo 99.2 1.7E-08 5.7E-13 90.7 23.7 181 349-536 85-284 (310)
87 3edt_B KLC 2, kinesin light ch 99.1 9.7E-10 3.3E-14 100.2 15.0 135 83-217 42-197 (283)
88 2fo7_A Synthetic consensus TPR 99.1 5.6E-09 1.9E-13 83.0 17.3 131 402-535 3-133 (136)
89 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.4E-13 79.8 17.5 130 367-499 3-132 (136)
90 1qqe_A Vesicular transport pro 99.0 1.8E-08 6.2E-13 92.3 19.0 169 366-536 78-271 (292)
91 2uy1_A Cleavage stimulation fa 99.0 5.1E-07 1.7E-11 88.7 30.0 377 97-533 7-412 (493)
92 3urz_A Uncharacterized protein 99.0 2.1E-08 7.3E-13 86.6 18.1 158 375-537 14-189 (208)
93 3qky_A Outer membrane assembly 99.0 2E-08 7E-13 90.3 18.1 102 82-184 13-127 (261)
94 3qky_A Outer membrane assembly 99.0 5.8E-08 2E-12 87.3 19.9 63 474-536 152-226 (261)
95 3rjv_A Putative SEL1 repeat pr 99.0 1.3E-07 4.3E-12 82.0 21.1 186 347-544 3-207 (212)
96 3mv2_B Coatomer subunit epsilo 99.0 2.6E-07 8.8E-12 83.0 23.3 218 48-289 13-239 (310)
97 2pzi_A Probable serine/threoni 98.9 2E-08 6.7E-13 103.5 17.2 185 340-531 401-602 (681)
98 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 8.9E-13 90.9 15.4 167 116-288 114-282 (287)
99 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.4E-12 82.2 19.6 68 83-150 3-72 (225)
100 2pzi_A Probable serine/threoni 98.9 2.4E-08 8.2E-13 102.9 16.4 173 95-276 402-583 (681)
101 2vsy_A XCC0866; transferase, g 98.9 4.5E-08 1.5E-12 99.1 18.1 154 343-500 2-158 (568)
102 1qqe_A Vesicular transport pro 98.9 7E-08 2.4E-12 88.3 17.6 177 346-537 33-231 (292)
103 2r5s_A Uncharacterized protein 98.9 1.5E-08 5.3E-13 84.9 12.1 161 122-288 9-171 (176)
104 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 83.7 13.2 162 368-533 9-172 (176)
105 3urz_A Uncharacterized protein 98.9 8.1E-08 2.8E-12 82.9 16.9 96 85-182 5-116 (208)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.7E-07 9.4E-12 80.7 19.9 60 231-292 152-215 (225)
107 3qou_A Protein YBBN; thioredox 98.9 7.1E-08 2.4E-12 88.0 16.5 166 363-532 115-282 (287)
108 2uy1_A Cleavage stimulation fa 98.9 4.6E-06 1.6E-10 81.9 30.5 98 48-148 14-118 (493)
109 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-08 4.9E-13 82.4 10.3 139 376-519 8-148 (150)
110 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-08 5.7E-13 82.0 10.6 142 93-240 6-148 (150)
111 3rjv_A Putative SEL1 repeat pr 98.8 3.2E-07 1.1E-11 79.4 18.7 142 65-217 3-157 (212)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.2E-07 1.1E-11 79.5 18.7 126 368-499 9-150 (213)
113 3dra_A Protein farnesyltransfe 98.8 3.8E-06 1.3E-10 76.2 26.1 215 102-323 51-285 (306)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 3.9E-07 1.3E-11 84.0 19.9 61 202-289 4-64 (307)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.6E-07 5.4E-12 86.7 16.3 225 273-527 3-254 (307)
116 3u3w_A Transcriptional activat 98.8 4E-06 1.4E-10 76.6 25.2 163 371-533 81-265 (293)
117 3dra_A Protein farnesyltransfe 98.8 2.8E-06 9.6E-11 77.1 23.4 152 379-533 124-286 (306)
118 2vsy_A XCC0866; transferase, g 98.7 2E-07 7E-12 94.2 17.0 152 62-218 3-157 (568)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.1E-06 7.1E-11 74.2 18.8 126 334-464 10-150 (213)
120 1a17_A Serine/threonine protei 98.6 1.4E-06 4.9E-11 71.7 15.8 127 402-531 15-143 (166)
121 3q7a_A Farnesyltransferase alp 98.6 4.1E-05 1.4E-09 70.2 25.8 225 94-325 64-331 (349)
122 4gco_A Protein STI-1; structur 98.6 1.4E-06 4.6E-11 68.1 13.9 96 438-535 16-111 (126)
123 1a17_A Serine/threonine protei 98.6 2.5E-06 8.4E-11 70.3 16.1 130 366-498 14-145 (166)
124 3gw4_A Uncharacterized protein 98.6 6.3E-07 2.2E-11 76.8 12.7 156 377-533 4-175 (203)
125 3gyz_A Chaperone protein IPGC; 98.6 1.7E-06 5.7E-11 69.8 14.1 99 436-536 37-135 (151)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 5.7E-06 1.9E-10 75.6 19.6 166 367-532 77-264 (293)
127 1na0_A Designed protein CTPR3; 98.6 2.6E-06 8.8E-11 66.1 15.0 95 402-498 11-105 (125)
128 3gyz_A Chaperone protein IPGC; 98.6 1.9E-06 6.5E-11 69.5 14.1 104 399-506 35-138 (151)
129 4gco_A Protein STI-1; structur 98.6 2.4E-06 8.4E-11 66.6 14.4 96 402-499 15-110 (126)
130 2e2e_A Formate-dependent nitri 98.5 9.8E-07 3.3E-11 73.8 12.8 120 377-499 22-144 (177)
131 2vgx_A Chaperone SYCD; alterna 98.5 6.4E-07 2.2E-11 72.3 10.9 99 399-499 20-118 (148)
132 4f3v_A ESX-1 secretion system 98.5 6E-06 2E-10 73.1 17.7 189 131-327 18-239 (282)
133 3u3w_A Transcriptional activat 98.5 1.4E-05 4.9E-10 72.9 20.7 91 91-181 82-182 (293)
134 1na0_A Designed protein CTPR3; 98.5 4.9E-06 1.7E-10 64.4 15.3 115 365-482 9-123 (125)
135 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 5.7E-11 78.5 14.1 194 83-289 3-198 (281)
136 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 66.5 14.1 97 400-498 16-112 (133)
137 2vgx_A Chaperone SYCD; alterna 98.5 8E-07 2.7E-11 71.7 10.4 101 434-536 20-120 (148)
138 2vyi_A SGTA protein; chaperone 98.5 3.6E-06 1.2E-10 65.9 14.0 118 400-520 12-129 (131)
139 3gw4_A Uncharacterized protein 98.5 2.3E-06 7.8E-11 73.3 13.7 120 96-216 4-134 (203)
140 2lni_A Stress-induced-phosphop 98.5 3.9E-06 1.3E-10 66.0 14.1 119 363-484 14-132 (133)
141 1p5q_A FKBP52, FK506-binding p 98.5 3.6E-06 1.2E-10 78.5 15.4 87 436-524 197-283 (336)
142 2e2e_A Formate-dependent nitri 98.5 1.4E-06 4.7E-11 72.9 11.4 125 411-538 21-148 (177)
143 2vyi_A SGTA protein; chaperone 98.5 4.5E-06 1.5E-10 65.3 13.8 119 365-486 12-130 (131)
144 4f3v_A ESX-1 secretion system 98.4 2.7E-06 9.4E-11 75.3 13.3 132 403-537 105-240 (282)
145 2qfc_A PLCR protein; TPR, HTH, 98.4 1.4E-05 4.6E-10 73.1 18.6 166 123-288 79-264 (293)
146 3upv_A Heat shock protein STI1 98.4 4.1E-06 1.4E-10 65.4 12.9 96 438-535 7-102 (126)
147 3q7a_A Farnesyltransferase alp 98.4 0.00015 5.1E-09 66.5 24.6 183 346-532 105-329 (349)
148 1p5q_A FKBP52, FK506-binding p 98.4 7.4E-06 2.5E-10 76.4 16.1 132 365-498 147-293 (336)
149 3sz7_A HSC70 cochaperone (SGT) 98.4 7.5E-06 2.6E-10 67.3 13.4 99 399-499 10-108 (164)
150 2xcb_A PCRH, regulatory protei 98.4 3.3E-06 1.1E-10 67.6 10.8 97 401-499 19-115 (142)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 8.3E-07 2.8E-11 75.8 7.5 134 400-535 38-187 (198)
152 2c2l_A CHIP, carboxy terminus 98.3 6.5E-06 2.2E-10 74.6 13.6 99 118-218 3-101 (281)
153 1elw_A TPR1-domain of HOP; HOP 98.3 2.7E-05 9.2E-10 59.4 15.3 94 402-497 6-99 (118)
154 3dss_A Geranylgeranyl transfer 98.3 0.00028 9.7E-09 64.4 24.0 185 346-537 90-307 (331)
155 3upv_A Heat shock protein STI1 98.3 1.7E-05 5.7E-10 61.8 14.1 98 400-499 4-101 (126)
156 2kck_A TPR repeat; tetratricop 98.3 7E-06 2.4E-10 62.2 11.6 101 435-537 6-109 (112)
157 4gcn_A Protein STI-1; structur 98.3 9.2E-06 3.1E-10 63.4 12.4 95 438-533 11-111 (127)
158 1elw_A TPR1-domain of HOP; HOP 98.3 1.6E-05 5.4E-10 60.7 13.5 102 434-537 3-104 (118)
159 4gcn_A Protein STI-1; structur 98.3 1E-05 3.5E-10 63.1 12.1 105 402-509 10-120 (127)
160 2xcb_A PCRH, regulatory protei 98.3 7.3E-06 2.5E-10 65.5 11.2 100 435-536 18-117 (142)
161 3q49_B STIP1 homology and U bo 98.3 2.4E-05 8.1E-10 61.9 13.6 99 399-499 8-106 (137)
162 3q49_B STIP1 homology and U bo 98.2 3.5E-05 1.2E-09 60.9 14.6 97 435-533 9-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 2.4E-05 8.3E-10 64.2 14.0 99 364-464 10-108 (164)
164 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-05 7.8E-10 66.8 13.9 131 367-499 40-186 (198)
165 3dss_A Geranylgeranyl transfer 98.2 0.00084 2.9E-08 61.3 24.5 183 65-255 47-267 (331)
166 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.6E-10 62.4 10.4 91 405-497 22-112 (121)
167 1elr_A TPR2A-domain of HOP; HO 98.2 1.5E-05 5.3E-10 62.2 11.3 97 402-499 6-108 (131)
168 2kck_A TPR repeat; tetratricop 98.2 1.5E-05 5.1E-10 60.2 10.9 98 400-499 6-106 (112)
169 2dba_A Smooth muscle cell asso 98.2 7.7E-05 2.6E-09 59.6 14.9 96 400-498 28-127 (148)
170 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.7E-10 59.9 11.3 97 438-536 20-116 (121)
171 1elr_A TPR2A-domain of HOP; HO 98.1 3.4E-05 1.2E-09 60.2 12.1 109 435-546 4-118 (131)
172 2dba_A Smooth muscle cell asso 98.1 0.00011 3.6E-09 58.8 15.2 99 82-183 26-128 (148)
173 3ro3_A PINS homolog, G-protein 98.1 1.2E-05 4.1E-10 65.6 9.6 132 402-533 11-157 (164)
174 4b4t_Q 26S proteasome regulato 98.1 0.00019 6.6E-09 69.5 19.1 130 87-216 58-202 (434)
175 4b4t_Q 26S proteasome regulato 98.1 0.0002 6.7E-09 69.4 19.0 165 368-532 58-243 (434)
176 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.2E-10 77.5 11.1 119 373-494 14-134 (477)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.8E-05 2E-09 73.6 14.1 123 366-490 269-405 (457)
178 3ro3_A PINS homolog, G-protein 98.0 4.3E-05 1.5E-09 62.2 10.9 133 367-499 11-158 (164)
179 3rkv_A Putative peptidylprolyl 98.0 8E-05 2.7E-09 60.9 12.3 99 400-499 11-126 (162)
180 3k9i_A BH0479 protein; putativ 98.0 1.9E-05 6.6E-10 60.5 7.8 84 414-498 4-89 (117)
181 2xev_A YBGF; tetratricopeptide 98.0 0.00015 5E-09 56.5 13.1 92 406-499 8-105 (129)
182 2xev_A YBGF; tetratricopeptide 98.0 0.00017 6E-09 56.0 13.5 27 156-182 41-67 (129)
183 1wao_1 Serine/threonine protei 98.0 2.3E-05 7.9E-10 76.8 9.6 119 341-462 17-137 (477)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 8.9E-05 3.1E-09 72.3 13.5 131 399-531 267-412 (457)
185 3rkv_A Putative peptidylprolyl 97.9 0.00018 6E-09 58.8 12.5 99 365-464 11-126 (162)
186 3k9i_A BH0479 protein; putativ 97.9 4.5E-05 1.5E-09 58.4 8.0 86 378-464 3-90 (117)
187 1klx_A Cysteine rich protein B 97.9 0.00044 1.5E-08 54.6 13.9 113 414-537 9-129 (138)
188 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.7E-09 68.0 13.4 89 435-525 273-361 (370)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 4.1E-05 1.4E-09 71.3 9.1 151 365-537 179-331 (338)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.7E-09 68.5 12.5 124 365-491 223-362 (370)
191 2hr2_A Hypothetical protein; a 97.8 0.00058 2E-08 54.4 13.8 96 403-498 14-130 (159)
192 2hr2_A Hypothetical protein; a 97.8 0.00021 7.2E-09 56.9 10.9 97 436-534 12-131 (159)
193 1dce_A Protein (RAB geranylger 97.8 0.0014 4.8E-08 65.4 18.5 154 380-537 44-224 (567)
194 2l6j_A TPR repeat-containing p 97.7 3.7E-05 1.3E-09 58.0 4.5 92 434-528 3-101 (111)
195 2kat_A Uncharacterized protein 97.7 0.00033 1.1E-08 53.2 9.8 79 418-498 3-81 (115)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00016 5.4E-09 67.3 9.0 139 340-499 189-328 (338)
197 1dce_A Protein (RAB geranylger 97.6 0.0053 1.8E-07 61.2 20.1 150 135-290 45-221 (567)
198 1klx_A Cysteine rich protein B 97.6 0.0022 7.7E-08 50.4 13.7 110 380-500 10-127 (138)
199 3n71_A Histone lysine methyltr 97.5 0.00047 1.6E-08 67.1 11.2 66 225-290 392-464 (490)
200 2l6j_A TPR repeat-containing p 97.5 8.1E-05 2.8E-09 56.1 4.6 90 84-175 4-99 (111)
201 2kat_A Uncharacterized protein 97.5 0.00078 2.7E-08 51.1 9.9 79 102-182 3-81 (115)
202 3n71_A Histone lysine methyltr 97.5 0.00034 1.1E-08 68.1 9.5 123 411-533 320-463 (490)
203 1zu2_A Mitochondrial import re 97.5 0.00038 1.3E-08 55.3 8.0 94 414-511 16-130 (158)
204 1na3_A Designed protein CTPR2; 97.4 0.0017 5.9E-08 46.4 10.4 60 403-463 12-71 (91)
205 1zu2_A Mitochondrial import re 97.4 0.0006 2.1E-08 54.2 7.7 100 376-479 13-133 (158)
206 1na3_A Designed protein CTPR2; 97.3 0.0018 6.2E-08 46.3 9.8 63 85-148 10-72 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.8E-08 48.7 8.3 64 434-498 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.1 0.0029 1E-07 46.4 8.7 64 118-182 6-69 (100)
209 3ly7_A Transcriptional activat 97.0 0.013 4.3E-07 53.8 14.0 137 398-538 192-343 (372)
210 1pc2_A Mitochondria fission pr 97.0 0.0079 2.7E-07 47.2 10.6 81 454-536 17-102 (152)
211 2kc7_A BFR218_protein; tetratr 96.7 0.0033 1.1E-07 45.9 6.4 57 442-499 7-64 (99)
212 3ly7_A Transcriptional activat 96.6 0.043 1.5E-06 50.3 14.2 74 432-509 274-347 (372)
213 3mkq_A Coatomer beta'-subunit; 96.6 0.14 4.8E-06 53.9 19.8 150 129-319 609-759 (814)
214 3qww_A SET and MYND domain-con 96.5 0.0093 3.2E-07 57.0 9.4 84 449-532 312-409 (433)
215 3bee_A Putative YFRE protein; 96.3 0.03 1E-06 40.1 9.1 65 434-499 5-72 (93)
216 2kc7_A BFR218_protein; tetratr 96.3 0.023 7.8E-07 41.2 8.7 65 476-541 6-71 (99)
217 3qwp_A SET and MYND domain-con 96.3 0.025 8.6E-07 54.1 11.0 85 447-531 299-397 (429)
218 3qww_A SET and MYND domain-con 96.2 0.016 5.4E-07 55.4 9.2 89 201-289 310-410 (433)
219 3mkq_A Coatomer beta'-subunit; 96.2 0.16 5.3E-06 53.5 17.6 47 164-216 662-708 (814)
220 3qwp_A SET and MYND domain-con 96.2 0.024 8.1E-07 54.3 10.1 63 227-289 330-399 (429)
221 3u64_A Protein TP_0956; tetrat 96.1 0.064 2.2E-06 47.1 11.2 83 416-502 179-272 (301)
222 3bee_A Putative YFRE protein; 96.1 0.051 1.7E-06 38.9 9.1 66 117-183 4-72 (93)
223 1wy6_A Hypothetical protein ST 95.8 0.41 1.4E-05 36.2 15.9 149 121-293 7-157 (172)
224 3mkq_B Coatomer subunit alpha; 95.7 0.25 8.4E-06 39.8 12.6 101 128-251 14-114 (177)
225 3mkq_B Coatomer subunit alpha; 95.6 0.67 2.3E-05 37.3 15.8 130 91-252 12-141 (177)
226 1nzn_A CGI-135 protein, fissio 95.6 0.074 2.5E-06 40.1 8.4 83 452-536 18-105 (126)
227 1pc2_A Mitochondria fission pr 95.6 0.11 3.8E-06 40.7 9.8 82 101-183 15-100 (152)
228 3u64_A Protein TP_0956; tetrat 95.4 0.26 8.8E-06 43.4 12.3 88 380-467 178-272 (301)
229 4h7y_A Dual specificity protei 95.3 0.19 6.3E-06 39.0 9.8 105 82-188 11-128 (161)
230 2v5f_A Prolyl 4-hydroxylase su 95.3 0.13 4.6E-06 37.6 9.2 66 434-499 4-75 (104)
231 1wy6_A Hypothetical protein ST 95.1 0.76 2.6E-05 34.8 16.0 64 437-501 93-156 (172)
232 2v5f_A Prolyl 4-hydroxylase su 95.0 0.23 8E-06 36.3 9.6 65 118-182 4-74 (104)
233 3lvg_A Clathrin heavy chain 1; 94.9 0.0052 1.8E-07 57.7 0.3 41 232-273 235-275 (624)
234 4h7y_A Dual specificity protei 94.1 1.1 3.7E-05 34.8 11.4 53 449-502 74-126 (161)
235 2wpv_A GET4, UPF0363 protein Y 94.1 3.1 0.00011 37.2 19.3 114 121-249 35-157 (312)
236 1nzn_A CGI-135 protein, fissio 93.3 0.98 3.4E-05 34.0 9.8 83 415-499 16-103 (126)
237 3lpz_A GET4 (YOR164C homolog); 93.0 5 0.00017 36.2 19.9 65 121-200 37-105 (336)
238 3lvg_A Clathrin heavy chain 1; 92.7 0.015 5.2E-07 54.7 -0.8 198 25-240 52-277 (624)
239 4b4t_P 26S proteasome regulato 91.7 9.4 0.00032 36.4 21.1 52 61-112 29-84 (445)
240 4fhn_B Nucleoporin NUP120; pro 91.6 5.5 0.00019 43.5 17.2 133 64-205 828-987 (1139)
241 4ady_A RPN2, 26S proteasome re 91.4 15 0.00053 38.4 31.7 276 230-516 378-672 (963)
242 2ff4_A Probable regulatory pro 91.4 0.81 2.8E-05 42.9 9.2 71 438-509 174-249 (388)
243 4gns_B Protein CSD3, chitin bi 91.0 1.4 4.6E-05 45.0 10.9 54 197-253 345-398 (754)
244 1qsa_A Protein (soluble lytic 90.9 14 0.00048 36.9 27.2 114 380-497 229-346 (618)
245 4gns_B Protein CSD3, chitin bi 90.6 1.4 4.7E-05 45.0 10.5 54 443-497 345-398 (754)
246 1v54_E Cytochrome C oxidase po 90.3 2.9 0.0001 29.7 8.7 63 99-162 25-87 (109)
247 2ff4_A Probable regulatory pro 90.2 1.1 3.9E-05 41.9 9.1 72 121-193 173-249 (388)
248 4b4t_P 26S proteasome regulato 90.1 13 0.00045 35.4 20.1 97 193-289 141-246 (445)
249 1v54_E Cytochrome C oxidase po 90.0 3.8 0.00013 29.2 9.0 47 453-499 28-74 (109)
250 3txn_A 26S proteasome regulato 88.4 16 0.00055 34.0 21.2 22 231-252 144-165 (394)
251 4ady_A RPN2, 26S proteasome re 87.6 30 0.001 36.3 34.1 257 270-533 383-657 (963)
252 1y8m_A FIS1; mitochondria, unk 87.0 8.8 0.0003 29.5 13.5 69 468-536 37-108 (144)
253 2y69_E Cytochrome C oxidase su 87.0 4.3 0.00015 30.6 8.1 45 454-498 72-116 (152)
254 4fhn_B Nucleoporin NUP120; pro 86.7 8.5 0.00029 42.0 14.2 144 370-521 817-987 (1139)
255 1wdy_A 2-5A-dependent ribonucl 84.8 3.4 0.00012 36.3 8.6 19 343-361 192-210 (285)
256 2y69_E Cytochrome C oxidase su 84.8 11 0.00037 28.5 9.3 46 383-428 71-116 (152)
257 3o48_A Mitochondria fission 1 84.1 12 0.00039 28.4 9.4 26 510-535 83-108 (134)
258 3o48_A Mitochondria fission 1 84.0 12 0.00041 28.3 9.8 68 432-499 37-107 (134)
259 3ffl_A Anaphase-promoting comp 80.8 12 0.0004 29.7 8.8 62 121-182 22-91 (167)
260 3ffl_A Anaphase-promoting comp 79.7 4.4 0.00015 32.1 6.1 58 89-146 25-90 (167)
261 2fu4_A Ferric uptake regulatio 79.5 4.5 0.00015 27.7 5.7 61 495-556 7-68 (83)
262 1zbp_A Hypothetical protein VP 78.4 5.3 0.00018 34.6 6.7 52 200-254 8-59 (273)
263 3esl_A Checkpoint serine/threo 78.3 25 0.00084 28.9 10.3 56 448-503 92-148 (202)
264 4b4t_R RPN7, 26S proteasome re 78.3 25 0.00085 33.3 12.3 99 155-254 132-236 (429)
265 1zbp_A Hypothetical protein VP 78.2 7.9 0.00027 33.5 7.7 53 165-218 8-60 (273)
266 1wdy_A 2-5A-dependent ribonucl 77.4 6.3 0.00022 34.5 7.6 201 266-489 7-235 (285)
267 1y8m_A FIS1; mitochondria, unk 77.0 23 0.00078 27.2 11.9 68 432-499 36-106 (144)
268 2p58_C Putative type III secre 77.0 17 0.00059 25.7 8.0 77 451-535 23-99 (116)
269 1qsa_A Protein (soluble lytic 76.9 63 0.0022 32.2 33.5 118 203-324 228-347 (618)
270 2wpv_A GET4, UPF0363 protein Y 75.5 44 0.0015 29.8 21.2 81 398-497 132-215 (312)
271 2uwj_G Type III export protein 75.5 16 0.00056 25.8 7.1 52 478-535 47-98 (115)
272 4g8k_A 2-5A-dependent ribonucl 75.4 26 0.0009 31.6 11.4 39 459-504 290-328 (337)
273 3eiq_C Programmed cell death p 75.3 12 0.0004 34.3 8.5 63 369-432 221-285 (358)
274 4b4t_R RPN7, 26S proteasome re 74.2 29 0.001 32.8 11.5 98 402-499 133-237 (429)
275 3esl_A Checkpoint serine/threo 74.1 35 0.0012 28.0 11.4 53 135-187 95-148 (202)
276 4a1g_A Mitotic checkpoint seri 73.9 29 0.001 27.0 9.6 51 138-188 84-135 (152)
277 3lpz_A GET4 (YOR164C homolog); 72.4 55 0.0019 29.5 24.0 126 354-498 83-215 (336)
278 3eiq_C Programmed cell death p 70.8 63 0.0022 29.5 14.3 63 438-501 220-284 (358)
279 2fe3_A Peroxide operon regulat 69.6 11 0.00038 29.2 6.2 61 495-556 12-72 (145)
280 2zu6_B Programmed cell death p 68.7 18 0.0006 32.3 8.0 63 369-432 170-234 (307)
281 1mzb_A Ferric uptake regulatio 68.0 11 0.00038 28.8 5.8 60 496-556 9-69 (136)
282 2xig_A Ferric uptake regulatio 66.2 14 0.00047 28.9 6.1 60 496-556 18-77 (150)
283 4b4t_S RPN3, 26S proteasome re 64.7 24 0.00082 34.0 8.4 25 86-110 233-257 (523)
284 2uwj_G Type III export protein 64.3 35 0.0012 24.2 6.9 11 412-422 51-61 (115)
285 2p58_C Putative type III secre 63.1 38 0.0013 24.1 7.9 15 410-424 50-64 (116)
286 2w57_A Ferric uptake regulatio 62.7 14 0.00046 28.9 5.5 60 496-556 8-68 (150)
287 4g8k_A 2-5A-dependent ribonucl 62.5 71 0.0024 28.6 11.3 147 374-539 174-328 (337)
288 1ug3_A EIF4GI, eukaryotic prot 62.2 88 0.003 28.3 11.6 24 264-287 14-37 (339)
289 2nsz_A Programmed cell death p 61.6 36 0.0012 25.6 7.5 106 438-555 10-117 (129)
290 3eyy_A Putative iron uptake re 59.6 14 0.00047 28.7 5.0 59 496-556 10-68 (145)
291 1k1a_A B-cell lymphoma 3-encod 57.9 51 0.0017 27.6 9.0 20 236-255 16-35 (241)
292 4ets_A Ferric uptake regulatio 57.2 18 0.00061 28.7 5.3 58 498-556 26-85 (162)
293 3eu9_A Huntingtin-interacting 56.5 12 0.0004 31.6 4.6 19 514-532 216-234 (240)
294 4a1g_A Mitotic checkpoint seri 55.8 70 0.0024 24.9 9.6 52 244-295 83-135 (152)
295 3jxi_A Vanilloid receptor-rela 55.5 8.1 0.00028 33.4 3.4 188 336-533 8-250 (260)
296 2wvi_A Mitotic checkpoint seri 55.3 30 0.001 27.3 6.2 34 226-259 96-129 (164)
297 1n11_A Ankyrin; clathrin, BAND 55.0 59 0.002 30.5 9.8 110 91-213 18-134 (437)
298 2wvi_A Mitotic checkpoint seri 54.7 77 0.0026 25.0 9.9 51 138-188 79-130 (164)
299 2ion_A PDCD4, programmed cell 54.5 66 0.0023 25.0 8.1 64 368-432 12-77 (152)
300 3txn_A 26S proteasome regulato 54.3 1.4E+02 0.0047 27.7 22.8 92 231-322 104-207 (394)
301 2nsz_A Programmed cell death p 52.5 72 0.0024 24.0 9.4 64 368-432 10-75 (129)
302 2ion_A PDCD4, programmed cell 52.1 38 0.0013 26.4 6.3 107 437-555 11-119 (152)
303 3hra_A Ankyrin repeat family p 51.7 28 0.00097 28.2 6.1 13 421-433 159-171 (201)
304 3mwm_A ZUR, putative metal upt 51.7 14 0.00049 28.3 3.8 47 510-556 18-64 (139)
305 3eu9_A Huntingtin-interacting 51.1 40 0.0014 28.2 7.2 12 271-282 16-27 (240)
306 2d2s_A Exocyst complex compone 50.8 69 0.0024 27.2 8.2 91 405-498 23-119 (235)
307 2o03_A Probable zinc uptake re 49.3 15 0.00051 27.9 3.5 44 512-555 17-60 (131)
308 2ijq_A Hypothetical protein; s 48.7 82 0.0028 24.8 7.6 50 97-146 45-102 (161)
309 3hra_A Ankyrin repeat family p 47.7 38 0.0013 27.4 6.3 13 95-107 13-25 (201)
310 3ltm_A Alpha-REP4; protein eng 47.5 1.1E+02 0.0039 24.8 18.1 168 364-551 32-199 (211)
311 4b4t_S RPN3, 26S proteasome re 47.4 2E+02 0.007 27.7 11.7 65 154-218 231-299 (523)
312 2zu6_B Programmed cell death p 46.2 1.6E+02 0.0055 26.2 11.8 74 472-546 168-243 (307)
313 3jxi_A Vanilloid receptor-rela 45.7 14 0.00046 31.9 3.2 18 480-497 232-249 (260)
314 3c1d_A Protein ORAA, regulator 45.5 1.1E+02 0.0037 24.0 11.1 53 415-469 45-97 (159)
315 4ets_A Ferric uptake regulatio 45.3 42 0.0014 26.5 5.7 62 71-133 20-83 (162)
316 4aez_C MAD3, mitotic spindle c 45.1 1.1E+02 0.0036 25.7 8.2 54 136-189 131-185 (223)
317 2d2s_A Exocyst complex compone 45.0 1E+02 0.0035 26.1 8.4 89 90-181 24-118 (235)
318 3kea_A K1L; tropism, ANK repea 44.3 73 0.0025 27.8 7.9 16 456-471 209-224 (285)
319 1k1a_A B-cell lymphoma 3-encod 43.7 1.3E+02 0.0045 24.9 9.4 24 91-114 13-36 (241)
320 2ijq_A Hypothetical protein; s 43.5 1.2E+02 0.004 23.9 8.2 52 131-182 44-103 (161)
321 2fe3_A Peroxide operon regulat 42.8 68 0.0023 24.6 6.5 45 89-133 26-70 (145)
322 3eyy_A Putative iron uptake re 42.6 71 0.0024 24.5 6.6 56 76-133 11-66 (145)
323 1n11_A Ankyrin; clathrin, BAND 42.5 1.8E+02 0.006 27.1 10.9 362 125-532 17-400 (437)
324 4aez_C MAD3, mitotic spindle c 42.5 43 0.0015 28.0 5.5 34 226-259 150-183 (223)
325 3kea_A K1L; tropism, ANK repea 42.2 1.3E+02 0.0046 26.0 9.4 139 374-530 101-243 (285)
326 3t8k_A Uncharacterized protein 39.4 1E+02 0.0035 24.8 7.5 96 410-505 45-149 (186)
327 3d5l_A Regulatory protein RECX 39.3 1.7E+02 0.0057 24.5 8.9 162 357-529 40-204 (221)
328 3pvs_A Replication-associated 35.8 2.9E+02 0.0098 26.1 13.0 54 412-465 267-325 (447)
329 3ltj_A Alpharep-4; protein eng 34.8 1.8E+02 0.006 23.4 17.4 122 399-533 58-179 (201)
330 2keb_A DNA polymerase subunit 33.9 1.2E+02 0.0042 21.3 6.2 33 102-134 27-59 (101)
331 2r9g_A AAA ATPase, central reg 33.5 2E+02 0.0067 23.5 10.4 30 334-364 18-47 (204)
332 3bu8_A Telomeric repeat-bindin 33.3 2.1E+02 0.0071 23.7 12.2 49 135-183 88-143 (235)
333 3aji_A 26S proteasome non-ATPa 33.1 78 0.0027 26.2 6.1 19 268-286 10-28 (231)
334 1mzb_A Ferric uptake regulatio 33.0 1.3E+02 0.0045 22.6 6.7 16 169-184 33-48 (136)
335 3kae_A CDC27, possible protein 32.2 1.8E+02 0.006 23.2 6.9 81 411-497 44-141 (242)
336 3bge_A Predicted ATPase; struc 31.8 2.1E+02 0.0072 23.3 9.8 33 335-367 12-44 (201)
337 3ljn_A Hypothetical protein; a 31.8 73 0.0025 29.0 6.0 15 375-389 180-194 (364)
338 2pnn_A Transient receptor pote 30.8 41 0.0014 29.1 4.0 22 235-256 19-40 (273)
339 3gvo_A Pumilio 2, pumilio homo 30.8 83 0.0028 28.6 6.1 58 88-145 38-96 (351)
340 3e3v_A Regulatory protein RECX 30.7 1.8E+02 0.0061 23.2 7.3 103 450-555 48-151 (177)
341 2rfa_A Transient receptor pote 30.4 1.4E+02 0.0047 24.7 7.2 87 442-533 125-222 (232)
342 3dfg_A Xcrecx, regulatory prot 30.2 2E+02 0.0068 22.5 12.1 63 104-169 85-147 (162)
343 2o03_A Probable zinc uptake re 29.9 85 0.0029 23.5 5.1 44 90-133 16-59 (131)
344 2pnn_A Transient receptor pote 29.4 50 0.0017 28.5 4.3 18 513-530 238-255 (273)
345 3t8k_A Uncharacterized protein 29.1 2.2E+02 0.0075 22.7 9.7 65 232-296 41-109 (186)
346 2cos_A Serine/threonine protei 28.5 49 0.0017 20.2 2.6 35 492-531 12-48 (54)
347 2w57_A Ferric uptake regulatio 28.5 1.5E+02 0.0052 22.8 6.4 15 170-184 33-47 (150)
348 2etb_A Transient receptor pote 28.3 58 0.002 27.7 4.4 18 514-531 227-244 (256)
349 3mwm_A ZUR, putative metal upt 27.4 84 0.0029 23.9 4.7 45 89-133 18-62 (139)
350 3ljn_A Hypothetical protein; a 27.1 1.5E+02 0.0052 26.7 7.3 47 479-530 217-266 (364)
351 2b7e_A PRE-mRNA processing pro 26.9 72 0.0025 20.0 3.3 29 171-199 3-31 (59)
352 2xig_A Ferric uptake regulatio 26.8 2.2E+02 0.0074 21.9 8.5 59 425-484 17-75 (150)
353 3utm_A Tankyrase-1; tankyrase, 26.6 3.3E+02 0.011 24.0 10.8 109 268-388 28-144 (351)
354 2rfa_A Transient receptor pote 26.5 2.6E+02 0.0091 22.8 9.1 16 376-391 205-220 (232)
355 3v31_A Ankyrin repeat family A 26.0 2.2E+02 0.0075 21.7 7.7 48 480-531 109-158 (167)
356 4gq2_M Nucleoporin NUP120; bet 25.7 3.6E+02 0.012 28.6 10.6 48 507-554 899-950 (950)
357 1ug3_A EIF4GI, eukaryotic prot 25.3 1.5E+02 0.005 26.9 6.6 25 471-495 142-166 (339)
358 3ctd_A Putative ATPase, AAA fa 24.9 2.9E+02 0.01 22.8 9.4 31 335-365 40-70 (213)
359 3pvs_A Replication-associated 24.9 4.4E+02 0.015 24.8 13.5 55 447-501 267-326 (447)
360 4gq2_M Nucleoporin NUP120; bet 24.7 3.2E+02 0.011 29.0 10.0 108 90-203 816-950 (950)
361 1bpo_A Protein (clathrin); cla 24.6 4.6E+02 0.016 24.9 9.9 71 113-184 355-425 (494)
362 3bu8_A Telomeric repeat-bindin 23.5 3.2E+02 0.011 22.7 12.3 21 408-428 122-142 (235)
363 3bge_A Predicted ATPase; struc 23.5 3E+02 0.01 22.4 8.4 54 412-465 19-77 (201)
364 2r9g_A AAA ATPase, central reg 23.0 3.1E+02 0.011 22.4 9.9 54 412-466 26-84 (204)
365 2fu4_A Ferric uptake regulatio 23.0 1.7E+02 0.0058 19.4 7.7 14 451-464 33-46 (83)
366 1ich_A TNF-1, tumor necrosis f 22.7 2E+02 0.0069 20.9 5.5 71 36-113 30-101 (112)
367 3ygs_P Procaspase 9; apoptosis 22.2 2.1E+02 0.0071 20.0 6.4 36 134-173 52-87 (97)
368 3b7b_A Euchromatic histone-lys 22.1 83 0.0028 26.2 4.2 20 479-498 216-235 (237)
369 1wgl_A TOLL-interacting protei 21.7 1.6E+02 0.0053 18.5 6.1 37 45-83 21-57 (59)
370 3d9h_A CDNA FLJ77766, highly s 21.4 1.9E+02 0.0065 25.0 6.5 24 85-108 13-36 (285)
371 3aji_A 26S proteasome non-ATPa 21.3 2.3E+02 0.0079 23.1 6.9 173 337-529 10-193 (231)
372 3twr_A Tankyrase-2; ankyrin re 21.2 2E+02 0.007 21.9 6.2 15 93-107 14-28 (165)
373 2etb_A Transient receptor pote 20.3 2E+02 0.0067 24.2 6.3 113 410-529 9-157 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=326.19 Aligned_cols=449 Identities=9% Similarity=-0.041 Sum_probs=389.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++..|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57888999999999999999999999999864 578899999999999999999999999998543 56889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHh-C--------------CCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCch
Q 008727 162 AVLASDGYIDNALKMFDEMSH-R--------------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~-~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
.+|.+.|++++|.++|+++.. . +..++..+|..++.+|.+.|++++|++.|+++.+. .|.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cchhh
Confidence 999999999999999995322 2 23446789999999999999999999999999877 33333
Q ss_pred hhHHH--------------------------------------HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008727 227 VIAVL--------------------------------------IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVA 268 (556)
Q Consensus 227 ~~~~~--------------------------------------li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 268 (556)
..+.. ++..|.+.|++++|.++|+++.+. .++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 33332 356677889999999999999875 57999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChh
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPR 347 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 347 (556)
..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|+.++|.++++.+.+.. +.+..+++.+...+. .|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999987643 67789999999999999999999999998654 446777777777655 68999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 348 SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
+|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998754 336789999999999999999999999999987654 78899999999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 428 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+
T Consensus 469 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 87543 7899999999999999999999999999876 66787 7899999999999999999999999999875
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
+.+..+|..+..+|.+.|++++|.++++++.+.++.. ...+..+
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l 590 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLL 590 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHH
Confidence 3378999999999999999999999999999987653 3334333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-36 Score=308.85 Aligned_cols=442 Identities=12% Similarity=0.002 Sum_probs=367.5
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 175 (556)
..+.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..+++.++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3455555555554332 257889999999999999999999999999854 5577899999999999999999999
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc-------------CCCCCchhhHHHHHHHHhccCCH
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE-------------NSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+|+.+... .++..+++.++.+|.+.|++++|.++|+++.... ...+.+..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988653 5788899999999999999999999998533220 01234578899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH--------------------------------------HHHHHHhcCCHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRI--------------------------------------VAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~--------------------------------------ll~~~~~~~~~~~a~~~~ 284 (556)
++|.++|++|.+.+.. +...+.. ++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999876422 2333322 345566789999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVP 363 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~ 363 (556)
+++.+. .++..++..++..+.+.|++++|.++|+.+.+.++. +..+++.+...+. .|+.++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 578889999999999999999999999999977644 5666777776654 699999999999998654 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+..++..++..|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 7889999999999999999999999999886543 688999999999999999999999999998754 37889999999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HhhHHHHHHHHHc
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD--ATTYTSLLEGLCQ 517 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~ 517 (556)
+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999875 567899999999999999999999999999876 77888 7899999999999
Q ss_pred cCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
.|++++|.++++++.+.++ .+...+..+..+|++.|
T Consensus 529 ~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKK 564 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhC
Confidence 9999999999999998874 36788888888888876
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.8e-32 Score=266.18 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC---------HHH
Q 008727 349 AIVFFNFMIEKGRVPTL-STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR---------LRE 418 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~ 418 (556)
+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555554443 34667777777777777777777777777777777777777777776543 567
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 419 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhh
Q 008727 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (556)
Q Consensus 499 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 553 (556)
.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..++..++..||..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777777654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.8e-31 Score=262.15 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=128.7
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 246 FKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 246 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
..+.+++.+++..+.. ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 235555556666666666666666665556655555555555555544432110
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHH
Q 008727 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (556)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (556)
...++.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011235566667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (556)
++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777666653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2e-26 Score=222.86 Aligned_cols=361 Identities=12% Similarity=0.022 Sum_probs=215.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455667888888888888877754 4556667777777888888888888888877654 33677888888888888888
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.|+.+... .|.....+..+...+...|++++|.+.|+
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888887653 123456777788888888888888888888766 55666677777778888888888888888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC
Q 008727 251 ELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330 (556)
Q Consensus 251 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (556)
++.+.. +.+..+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~----------- 226 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY----------- 226 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH-----------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH-----------
Confidence 877652 224567777777777777777777777777664221 1222333333333333333333322
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHH
Q 008727 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410 (556)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 410 (556)
++..... +.+..++..+...+.+.|++++|.+.|+++.+.++. +..+|..+...+
T Consensus 227 -----------------------~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 281 (388)
T 1w3b_A 227 -----------------------LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANAL 281 (388)
T ss_dssp -----------------------HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHH
T ss_pred -----------------------HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 2222211 112334444444455555555555555555444322 334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
.+.|++++|.+.++++.+... .+..++..+...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555444321 234444455555555555555555555544431 223444444555555555555555
Q ss_pred HHHHHHH
Q 008727 491 RLFHNML 497 (556)
Q Consensus 491 ~~~~~m~ 497 (556)
+.|+++.
T Consensus 360 ~~~~~a~ 366 (388)
T 1w3b_A 360 MHYKEAI 366 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.6e-26 Score=222.18 Aligned_cols=378 Identities=14% Similarity=0.046 Sum_probs=295.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcH
Q 008727 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (556)
Q Consensus 126 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 205 (556)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45567788888888888888776433 56677778888888888888888888877653 34667788888888888888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
++|++.|+++... .|.....+..+...+.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888766 56666777788888888888888888888877653 33 345666667777778888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008727 285 KKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (556)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (556)
+++.+.... +..++..+...+...|++++|...++.+. +.+ +.+
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------------~~~-p~~ 202 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------------------------------TLD-PNF 202 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH----------------------------------HHC-TTC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------hcC-CCc
Confidence 877765321 23455566666666666666665555544 332 224
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|...+++..+..+. +..++..+...|...|++++|.+.++++.+.+.. +..+|..+..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 567778888899999999999999998886544 6789999999999999999999999999987543 57789999999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+.+.|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 6788999999999999999999999999998652 33577899999999999999999
Q ss_pred HHHHHHhhhCCCcccHHHHHHHHHHHh
Q 008727 525 FEVFNKSVNHDVMLARSILSTFMISLC 551 (556)
Q Consensus 525 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 551 (556)
.+.++++.+..+.. ...+..+-..+.
T Consensus 359 ~~~~~~a~~~~p~~-~~a~~~lg~~~~ 384 (388)
T 1w3b_A 359 LMHYKEAIRISPTF-ADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC-HHHHHhHHHHHH
Confidence 99999999877653 334444444443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-22 Score=203.99 Aligned_cols=409 Identities=11% Similarity=0.033 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|......+.+.|++++|...|+++.+.+ |+...+..+..++.+.|++++|+..++++.+..+. +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3456677788888999999999999988875 68888888999999999999999999998876543 67788899999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc------------------CCC---
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE------------------NSM--- 222 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------------~~~--- 222 (556)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+.... ...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999888763 344444444444444433333333332211110 000
Q ss_pred ---------------------CCchhhHHHHHHHHhc---cCCHHHHHHHHHHHhh-----CCCC--------CCHHHHH
Q 008727 223 ---------------------INGSVIAVLIIHGFCK---GKRVEEAFKVLDELRI-----RECK--------PDFIAYR 265 (556)
Q Consensus 223 ---------------------~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~--------p~~~~~~ 265 (556)
+.+...+......+.. .|++++|.+.|+++.+ ..-. .+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1112222222222222 4555555555555444 1001 1123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC
Q 008727 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345 (556)
Q Consensus 266 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (556)
.+...+...|++++|...++++.+.... ...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~---------------------------------- 285 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND---------------------------------- 285 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC----------------------------------
Confidence 4444444455555555555544443322 3334444444444444
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
+++|...++...+... .+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...+++
T Consensus 286 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 286 STEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp CTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555544444321 13344455555555555555555555555554333 344555555555555555555555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGN----LKTYNILISKFSE---VGEIEGALRLFHNML 497 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 497 (556)
+.+.... +..++..+...+...|++++|.+.++++.+..- .++ ...|..+..+|.. .|++++|.+.++++.
T Consensus 364 ~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 364 AKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 5544221 344555555555555555555555555554310 111 2255555555555 555666666555555
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 498 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+.. +.+..++..+...|.+.|++++|.+.++++.+.++
T Consensus 443 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 443 KLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 432 11344455555555555666666666655555443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-22 Score=201.70 Aligned_cols=424 Identities=10% Similarity=-0.031 Sum_probs=295.2
Q ss_pred HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH
Q 008727 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (556)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 198 (556)
...+..+...+.+.|++++|+..|+++.... |+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4566777888899999999999999998875 588899999999999999999999999998865 2355688888899
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
+...|++++|...|+.+... .|.+......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHhhHHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999877 233333334444444443333444443433322222222221111111111111111
Q ss_pred HHHHHHHHHHhcCCC--------CC-hhhHHHHHHHHHh---cCCHHHHHHHHHHHHc-----C--CCC------CCHHH
Q 008727 279 EREVVLKKKRKLGVA--------PR-TNDYREFILGLIV---ERRICEAKELGEVIVS-----G--KFT------IDDDV 333 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~--------~~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~~------~~~~~ 333 (556)
....+...+...... |+ ...+......+.. .|++++|...++.+.+ . .+. .+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111111 11 2233333333443 7888888888888776 3 111 12233
Q ss_pred HHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 334 LNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 334 ~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
+..+... +..|++++|...|+++.+.... ...+..+...+...|++++|...++.+.+..+. +...+..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 4333333 4578999999999999887644 888888999999999999999999999887654 67789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
.|++++|...+++..+.... +..++..+...+...|++++|.+.++++.+.. +.+...|..+...|...|++++|.+.
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999987544 67789999999999999999999999999864 45678899999999999999999999
Q ss_pred HHHHHHCCCC-CC----HhhHHHHHHHHHc---cCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhh
Q 008727 493 FHNMLEKGVA-PD----ATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRV 554 (556)
Q Consensus 493 ~~~m~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 554 (556)
++++.+.... ++ ...+..+...+.. .|++++|.+.++++.+.++. +...+..+...|.+.|
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhc
Confidence 9999865211 11 3378889999999 99999999999999887754 3455666667666654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.7e-21 Score=194.50 Aligned_cols=439 Identities=10% Similarity=0.002 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|++.|+++.+..+. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4566777888889999999999999988875 567888999999999999999999999998877544 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 243 (556)
+...|++++|.+.|+.+ ... |+. ....+..+...+....|...++.+....+............+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 322 221 1222345556666778888888876531111111111122333444455555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHH-HHHHHHh--------cCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHh
Q 008727 244 EAFKVLDELRIRECKPDFIAYRI-VAEEFKL--------MGSVFEREVVLKKKRKLGVAPR------TNDYREFILGLIV 308 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~ 308 (556)
.+...+...... .+....+.. +...+.. .|++++|..+++++.+...... ...+..+...+..
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 544443332221 222221211 2111111 1356666666666655422210 1124444455666
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008727 309 ERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV 387 (556)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 387 (556)
.|++++|...++.+.+..+. ...+..+...+ ..|++++|...+++..+... .+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 66777777777666665433 33443333333 34667777777776665542 2456666666777777777777777
Q ss_pred HHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--
Q 008727 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG-- 465 (556)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 465 (556)
++.+.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7776665433 4556667777777777777777777777665322 45566667777777777777777777766532
Q ss_pred ---CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 466 ---CSGNLKTYNILISKFSEV----------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 466 ---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.......+..+..++... |++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 011122233444556666 77777777777776542 2245666667777777777777777777776
Q ss_pred hCCCc
Q 008727 533 NHDVM 537 (556)
Q Consensus 533 ~~~~~ 537 (556)
+..+.
T Consensus 490 ~~~~~ 494 (537)
T 3fp2_A 490 ILART 494 (537)
T ss_dssp HHC--
T ss_pred HhCCC
Confidence 65543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.4e-21 Score=189.37 Aligned_cols=207 Identities=13% Similarity=-0.076 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 345556666666666666666666666666543 345666666666666666666666666666655432 455666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.+|.+.|++++|.+.|+++.+.+. .+. ..+..+...+.. ..+..+...+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
Confidence 666666666666666666665431 112 333333322110 111123344555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 239 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++|.+.|+++.+... .+..++..+...+...|++++|.+.
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665542 22455566666666666666666666665554311 1223333344444444444443333
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.9e-21 Score=189.04 Aligned_cols=302 Identities=12% Similarity=0.033 Sum_probs=191.9
Q ss_pred hhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHH
Q 008727 58 PYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQK 137 (556)
Q Consensus 58 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 137 (556)
.+..+++..|+..|+.+.... +.+...|..+..++...|++++|...|+.+.+.+ +.+...+..+...|.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 344577999999999986543 3478899999999999999999999999999876 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 008727 138 AFSVFNEVKFNCEDIGP---EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (556)
Q Consensus 138 a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (556)
|.+.|+++....+. +. ..+..+...+... .+..+...+...|++++|+..|+.
T Consensus 113 A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 113 AEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887543 44 6777776553211 111223345556666677766666
Q ss_pred HHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008727 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (556)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (556)
+... .|.+..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..|+++.+. .|
T Consensus 169 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 169 ILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHh---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6654 44555666667777777777777777777766542 225666777777777777777777777776653 22
Q ss_pred ChhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008727 295 RTNDYREF-------------ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 295 ~~~~~~~l-------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 361 (556)
+....... ...+...| ++++|+..|+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------------------------------~~~~A~~~~~~~l~~~- 287 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDG----------------------------------RYTDATSKYESVMKTE- 287 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHhcC-
Confidence 22221111 22233333 3333333333333321
Q ss_pred CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008727 362 VPT-----LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (556)
Q Consensus 362 ~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 429 (556)
|+ ...+..+...+.+.|++++|...++.+.+..+. +...|..+..+|...|++++|...++++.+.
T Consensus 288 -p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 288 -PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp -CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 224444555555666666666666655543322 4455556666666666666666666665553
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.6e-20 Score=185.84 Aligned_cols=468 Identities=12% Similarity=0.025 Sum_probs=314.3
Q ss_pred HHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 54 RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 54 ~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.....+..+++..|+..|+.+.... +.++..|..+..++.+.|++++|.+.++++.+.+ +.+...+..+...+...|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcC
Confidence 3444445567889999999986654 3578899999999999999999999999999876 567889999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC------CccChhhHHHHHHHHHhhCcHHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
++++|...|+.+ .. ++...+..+..+...+...+|...++.+.... ..|+.. .+..+....+.+.
T Consensus 108 ~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 108 NFTDAMFDLSVL-SL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHL 178 (537)
T ss_dssp CHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCHHH
T ss_pred CHHHHHHHHHHH-hc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcChHH
Confidence 999999999744 32 22222333455666667788999999986642 223322 3334555555555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhcc--------CCHHHHHHHHHHHhhCCCCCC--------HHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKG--------KRVEEAFKVLDELRIRECKPD--------FIAYRIVAEEF 271 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~--------~~~~~~ll~~~ 271 (556)
+...+...... .+........+...+... |++++|.++|+++.+.. |+ ..++..+...+
T Consensus 179 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 179 EVSSVNTSSNY---DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHTSCCCCSS---CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc---ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 54443322211 222222333333333332 47888999998888763 33 23466666778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHH
Q 008727 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAI 350 (556)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~ 350 (556)
...|++++|...+++..+.. |+...+..+...+...|++++|.+.++.+.+..+. +..++..+... ...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 88899999999999988864 44667778888888999999999999988876544 34444444444 5578999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
..|++..+.... +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999876532 4577888899999999999999999999886544 67789999999999999999999999987643
Q ss_pred CC-----CCHhHHHHHHHHHhhc----------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 431 LD-----PDVSFYNSLMEACCRE----------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 431 ~~-----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
.. .....+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1122344555677777 99999999999999874 55678899999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+.+.. |+.......+. +.++...-..+ +.++ ....-+..++..|-+.|.
T Consensus 488 al~~~--~~~~~~~~~~~-------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 488 SAILA--RTMDEKLQATT-------FAEAAKIQKRL-RADP-IISAKMELTLARYRAKGM 536 (537)
T ss_dssp HHHHC----CHHHHHHHH-------HHHHHHHHHHH-HTC--------------------
T ss_pred HHHhC--CCcHHHHHHHh-------HHHHHHHHHhc-cccH-HHHHHHhhHHHHHhhccC
Confidence 99763 33322221111 23333443333 2332 234445556666666554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.8e-17 Score=157.89 Aligned_cols=327 Identities=13% Similarity=0.004 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...|+++.+..+. +..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34567777788888888888888888887765 456778888888888888888888888888776433 6678888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
.+...|++++|.+.|++..+.... .+...+..+.... . ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHcc
Confidence 888888888888888888775420 1222332221000 0 001111233444445
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (556)
++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|.+.++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444332 1233444444444555555555555555544432 1123334444444444555555544444
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH
Q 008727 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (556)
...+..+.. ...+ ..+..+. .......+...+.+.|++++|...++.+.+..+. +.
T Consensus 213 ~a~~~~~~~-~~~~----------------~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 268 (359)
T 3ieg_A 213 ECLKLDQDH-KRCF----------------AHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA 268 (359)
T ss_dssp HHHHHCTTC-HHHH----------------HHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred HHHhhCccc-hHHH----------------HHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence 443321110 0000 0000000 0011112233455555556665555555543322 11
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 401 ----ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 401 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
..+..+...+...|++++|...+++..+.... +..++..+...+...|++++|.+.|+++.+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12333444555555555555555555544211 344555555555555555555555555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.8e-17 Score=156.66 Aligned_cols=315 Identities=14% Similarity=0.088 Sum_probs=162.6
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 233 (556)
+..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++.+... .|.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcchHHHHHH
Confidence 34444555555555555555555555544321 23344445555555555555555555555544 333445555556
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKP----DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (556)
..+...|++++|.+.|++..+. .| +...+..+..... + ..+..+...+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------~----------------~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------M----------------QRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHc
Confidence 6666666666666666665544 23 1112211111000 0 0011112233333
Q ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008727 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389 (556)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 389 (556)
|++++|.+.++.+.+ .. +.+...+..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~----------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 134 ADYTAAITFLDKILE----------------------------------VC-VWDAELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp TCHHHHHHHHHHHHH----------------------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----------------------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333322 21 1233444555555556666666666666
Q ss_pred HHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH------------HHHHHHhhcCChhhHHHH
Q 008727 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN------------SLMEACCREDLLRPAKKL 457 (556)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~ 457 (556)
.+.+..+. +...+..+...+...|++++|...+++..+.... +...+. .+...+...|++++|...
T Consensus 179 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 256 (359)
T 3ieg_A 179 AASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256 (359)
T ss_dssp HHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65554432 4555666666666666666666666666554222 222221 224456667777777777
Q ss_pred HHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 458 WDQMFASGCSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 458 ~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++++.+.. +.+. ..+..+..+|...|++++|.+.+++..+.. +.+..+|..+...|.+.|++++|.+.++++.+
T Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 257 YESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77776643 1122 224445666777777777777777776542 22556666677777777777777777777766
Q ss_pred CCC
Q 008727 534 HDV 536 (556)
Q Consensus 534 ~~~ 536 (556)
.++
T Consensus 335 ~~p 337 (359)
T 3ieg_A 335 HNE 337 (359)
T ss_dssp TCT
T ss_pred cCC
Confidence 654
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.4e-17 Score=163.87 Aligned_cols=423 Identities=12% Similarity=0.067 Sum_probs=274.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.+...|..++.. .+.|+++.|..+|+.+.+.. |.+...|...+..+.+.|++++|..+|++..... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 367788888874 67788888888888888764 5677788888888888888888888888887763 4677777777
Q ss_pred HHH-HhcCCHhHHHH----HHHHHHh-CCCcc-ChhhHHHHHHHHHh---------hCcHHHHHHHHHHHHhccCCCCCc
Q 008727 162 AVL-ASDGYIDNALK----MFDEMSH-RGVEF-STIGFGVFIWKFCE---------NAKLGQVLSMLDEVRKRENSMING 225 (556)
Q Consensus 162 ~~~-~~~g~~~~a~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~ 225 (556)
... ...|+.++|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.... +. ...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~-~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PM-INI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CC-TTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hh-hhH
Confidence 543 34567666655 6665544 24333 34455555554433 56777777777777653 11 111
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------hcC---CCCCh
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR------KLG---VAPRT 296 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~~ 296 (556)
...|..........|. .+...++. ...+++..|..++.+.. +.. +.|+.
T Consensus 165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1222221111000000 00001110 12234455555554421 111 12221
Q ss_pred --------hhHHHHHHHHHhc----CCH----HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh--------cCChh-----
Q 008727 297 --------NDYREFILGLIVE----RRI----CEAKELGEVIVSGKFTIDDDVLNALIGSVS--------SIDPR----- 347 (556)
Q Consensus 297 --------~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~----- 347 (556)
..|...+...... ++. ..+..+|++.+...+ .++..|......+. .|+.+
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 2233332221111 222 356677777776533 35666666655544 47776
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 008727 348 --SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM-ESYNVMVSFLCTSGRLREAYGVIQ 424 (556)
Q Consensus 348 --~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 424 (556)
+|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+..+. +. ..|...+..+.+.|+.++|.++|+
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88999988876323345788888899999999999999999999986433 33 589999998999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-C
Q 008727 425 EMKRKGLDPDVSFYNSLMEA-CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-A 502 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 502 (556)
+..+.... +...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .
T Consensus 381 ~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 99876322 23333322222 336899999999999998763 44688899999999999999999999999998742 3
Q ss_pred CC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 503 PD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 503 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 32 34787778888889999999999999877554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7.6e-16 Score=153.26 Aligned_cols=358 Identities=9% Similarity=0.030 Sum_probs=221.7
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCh
Q 008727 83 SPLSYHSILKSLSL----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGP 154 (556)
Q Consensus 83 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 154 (556)
++..+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666665 667777777777666654 45566666666666 667777777777766654 55
Q ss_pred HhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCch
Q 008727 155 EICNSLLAVLAS----DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGS 226 (556)
Q Consensus 155 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (556)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+...+. + +.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~----~~ 183 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G----NV 183 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CH
Confidence 566666666666 566667777666666554 33444444444544 45566666666555543 1 23
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhh
Q 008727 227 VIAVLIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTND 298 (556)
Q Consensus 227 ~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (556)
..+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|...|++..+.|. ...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH
Confidence 444445555544 555556665555555443 33444444444443 4455555555554444321 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008727 299 YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR 378 (556)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 378 (556)
+..+...+..- .-..++.++|+..|++..+.| +...+..+...|...
T Consensus 258 ~~~lg~~y~~g------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 258 QFRLGYILEQG------------------------------LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHHHHHHHT------------------------------TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCC------------------------------CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 22222222220 000345666666666665543 344555566666665
Q ss_pred -----CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh---
Q 008727 379 -----NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG---RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR--- 447 (556)
Q Consensus 379 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--- 447 (556)
+++++|...|+...+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 78888888888887764 4556777777777655 7888888888888763 56778888888877
Q ss_pred -cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC
Q 008727 448 -EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 448 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 502 (556)
.+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|..
T Consensus 379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 788899999999888854 56677788888887 78999999999998887643
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2e-15 Score=150.28 Aligned_cols=369 Identities=11% Similarity=0.020 Sum_probs=248.7
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHhHHHH
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS----DGYIDNALK 175 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 175 (556)
...++...+.| +...+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444443 56666666666666 677777777777776653 55666667777766 677777777
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc----cCCHHHHHH
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK----GKRVEEAFK 247 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 247 (556)
.|++..+.| +...+..+...|.. .+++++|.+.|+..... + +...+..|...|.. .++.++|.+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777766654 33444445555555 55666666666666544 1 23444445555544 556666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 248 VLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 248 ~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...+....
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~------------- 233 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI------------- 233 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-------------
Confidence 666655543 44455555555544 455555555555544432 1222222222222200
Q ss_pred cCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcc
Q 008727 324 SGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
-..++.++|...|++..+.| +...+..+...|.. .++.++|.+.|+...+.+ +
T Consensus 234 -----------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 234 -----------------GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -----------------SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -----------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 00345666666666665543 34455556666666 899999999999998765 5
Q ss_pred HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHH
Q 008727 400 MESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED---LLRPAKKLWDQMFASGCSGNLK 471 (556)
Q Consensus 400 ~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~ 471 (556)
...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.+.|++..+.| +..
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~ 364 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA 364 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH
Confidence 66778888888887 89999999999999875 5567778888887756 7899999999999864 677
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 472 TYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 472 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+..|...|.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|..+|++..+.++.
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 88889999998 899999999999999876 56778888888887 89999999999999988754
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.5e-17 Score=152.70 Aligned_cols=289 Identities=14% Similarity=0.037 Sum_probs=155.9
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
+...+..+...+...|++++|.++|+++.+... .+...+..++..+...|++++|...++.+... .|.+...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL---YPSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHH
Confidence 444555555555555666666666655554431 23334444444555555555555555555544 33344445555
Q ss_pred HHHHhccC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 233 IHGFCKGK-RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 233 i~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+....
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------ 157 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------------------ 157 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------------------
Confidence 55555555 55555555555544321 12334444444444444444444444444332111
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008727 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVL 391 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 391 (556)
+...+..+...+...|++++|...++.+
T Consensus 158 ----------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 158 ----------------------------------------------------CHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp ----------------------------------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1222333445555666666666666666
Q ss_pred HhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG--------LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 392 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
.+..+. +...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++++|.+.++++.+
T Consensus 186 l~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 186 LSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 554433 45566666666666777777777666665531 022345666666677777777777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHH-HccCC
Q 008727 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGL-CQETN 520 (556)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~ 520 (556)
.. +.+...|..+..+|...|++++|.+.|+++.+. .| +...+..+..++ ...|+
T Consensus 265 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 265 LI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred hC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 53 345566666777777777777777777776643 23 444555555555 34444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.1e-16 Score=150.66 Aligned_cols=201 Identities=6% Similarity=-0.092 Sum_probs=158.8
Q ss_pred CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHH
Q 008727 115 ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (556)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (556)
.+.+...+..+...+...|++++|.++|+++.+..+. +...+..++..+...|++++|..+++++.+... .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4567778889999999999999999999999877543 677888889999999999999999999988642 35678888
Q ss_pred HHHHHHhhC-cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 195 FIWKFCENA-KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 195 li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
+...+...| ++++|.+.|+.+... .|.+...+..+...+...|++++|.+.|++..+.... +...+..+...+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTL---EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 888999999 999999999999876 5667788999999999999999999999999876322 45667778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 274 MGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
.|++++|.+.+++..+.... +...+..+...+...|++++|...++.+
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999988888765321 2344445555555555555555554443
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=6.1e-15 Score=148.25 Aligned_cols=416 Identities=9% Similarity=0.011 Sum_probs=281.0
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
+.......+.....++...|...|+.+.... +.+...|...+..+.+.|++++|..+|+++.... |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 4455555555444567889999999986653 4578889999999999999999999999999875 58888877775
Q ss_pred HH-HcCCChHHHHH----HHHHHHh-CCCCC-ChHhHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCccCh--
Q 008727 128 SL-IQGKNTQKAFS----VFNEVKF-NCEDI-GPEICNSLLAVLAS---------DGYIDNALKMFDEMSHRGVEFST-- 189 (556)
Q Consensus 128 ~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~-- 189 (556)
.. ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+. |..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 33 45677777765 7777654 34433 56788888887765 78999999999999883 332
Q ss_pred -hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH------hhCC---CCC
Q 008727 190 -IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDEL------RIRE---CKP 259 (556)
Q Consensus 190 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------~~~~---~~p 259 (556)
..|..........|. . +...++. .+.++++.|..++.++ .+.. +.|
T Consensus 165 ~~~~~~~~~~e~~~~~-~---------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-H---------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHCH-H---------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHhhch-h---------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 233222211100110 0 0011110 1233455555555542 1111 233
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------cCCHH---
Q 008727 260 D--------FIAYRIVAEEFKLM----GSV----FEREVVLKKKRKLGVAPRTNDYREFILGLIV-------ERRIC--- 313 (556)
Q Consensus 260 ~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~--- 313 (556)
+ ...|...+...... ++. ..+..+|++..... .-+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444332221 222 36667777777652 1234556666665554 68876
Q ss_pred ----HHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 008727 314 ----EAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPT--LSTLSNLSKNLCKRNKSDELVE 386 (556)
Q Consensus 314 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 386 (556)
+|..+++..++.-.+.+...|..+...+. .|++++|..+|++..+.. |+ ...|..++..+.+.|+++.|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 88889988886433445666766666644 689999999999998853 43 3578888888889999999999
Q ss_pred HHHHHHhCCCCccHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 008727 387 VYKVLSANDYFTDMESYNVMVSF-LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG 465 (556)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (556)
+|+...+.... +...|...... +...|+.++|..+|+...+.... +...|..++..+.+.|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999876432 33333332222 34689999999999998876432 57889999999999999999999999999863
Q ss_pred -CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 466 -CSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 466 -~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2332 447888888888999999999999999865
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.6e-17 Score=159.13 Aligned_cols=304 Identities=10% Similarity=-0.034 Sum_probs=170.9
Q ss_pred cCCHhHHHH-HHHHHHhCCC---ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 167 DGYIDNALK-MFDEMSHRGV---EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 167 ~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.|++++|.+ .|++...... ..+...+..+...+...|++++|...|+.+... .|.+..++..+...+.+.|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCH
Confidence 456666666 6654443221 112345556666677777777777777777665 455566666777777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+........ +..+ +.....
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~------- 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-VTPA-------EEGAGG------- 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-CC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHH-------HHHhhh-------
Confidence 77777777776553 2256667777777777777777777777776643221111 0000 000000
Q ss_pred HcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-cHh
Q 008727 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DME 401 (556)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 401 (556)
. .+. ..+. .+..+...|++++|...++.+.+..+.. +..
T Consensus 179 ----~----------------------------------~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 179 ----A----------------------------------GLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp ----------------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred ----h----------------------------------ccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 0 000 0000 1111225566666666666655543221 355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
++..+...|...|++++|...++++.+.... +..+|..+...+...|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6666666666677777777777766665322 45666667777777777777777777766653 344566677777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC----------CHhhHHHHHHHHHccCCHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAP----------DATTYTSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
+.|++++|.+.|+++.+..... ...+|..+..+|...|++++|..++++.
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 7777777777777766531110 1456777777777777777777766643
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=182.97 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
.||+++|++||+.|++++|.++|+.|.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4455555555555555555555544432 2444555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 443 EACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 443 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
.++++.|+. ++|.++|++|.+.|+.||..+|++++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555442 34455555555555555555555554433
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=177.21 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=103.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKR---KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
-..+||++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 455788888888888888888888877653 47788888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 476 LISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 476 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 8888888877 467788888888888888888888877766664 444444444 334333
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=5.2e-14 Score=147.06 Aligned_cols=384 Identities=9% Similarity=0.082 Sum_probs=176.4
Q ss_pred CCCCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhH
Q 008727 45 DSLSPSLVARVINPYLL-THHSLALGFFNWASQQPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122 (556)
Q Consensus 45 ~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (556)
.+..|+.+.-..+.+.. +.+..|+.+++.+..++. |.-+...-+.++....+. +..+..++.+..... + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 34455555544444443 235555555555543322 223334444444443333 333333333333211 1 1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh
Q 008727 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202 (556)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 202 (556)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 2244445555555555555555410 1112222221 3445555555554331 234455555555555
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 282 (556)
|++++|+..|... .+...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...
T Consensus 1119 G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 5555555555322 223444445555555555555555555444332 222222235555555555543222
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCC
Q 008727 283 VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~ 361 (556)
+. . .++...+..+...|...|++++|..+|..+ ..|..+...+. .|+++.|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 21 1 223334444445555555555555555543 23333333332 24555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008727 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (556)
Q Consensus 362 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 441 (556)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+++++...... +-....|+-+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 233445555555555555555554433221 244455566666777777777777776655432 1233345444
Q ss_pred HHHHhhc--CChhhHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHH
Q 008727 442 MEACCRE--DLLRPAKKLWDQMFASGCSG------NLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 442 l~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 490 (556)
...|++- ++..++.++|..-. +++| +...|.-++..|.+.|+++.|.
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4444442 23333333333221 1222 4566777777777777777776
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=4.1e-17 Score=156.23 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV---------------MVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+..++..+...+...|++++|.+.++.+.+..+. +...+.. .+..+...|++++|...++++.+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 4555666666666777777777777766665433 2222211 23334488999999999999998
Q ss_pred CCCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 008727 429 KGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT 507 (556)
Q Consensus 429 ~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 507 (556)
..... +..++..+...|...|++++|...++++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. +.+...
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 74332 47889999999999999999999999999864 5568899999999999999999999999998763 235778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhCCCcc----------cHHHHHHHHHHHhhhh
Q 008727 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVML----------ARSILSTFMISLCRRV 554 (556)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~~ 554 (556)
+..+...|.+.|++++|...++++.+..+.. ....+..+..+|.+.|
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999999999999999998755433 2567777888877665
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=6.3e-17 Score=154.71 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=159.0
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008727 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (556)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (556)
+...+..+...+.+.|++++|++.|+.+... .|.+..++..+...+.+.|++++|.+.|++..+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3445666677777777777777777777765 45566777777888888888888888888777653 2246677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (556)
...+...|++++|.+.++++.+.. |+.. .+..+.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~------------------------------------------- 174 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK------------------------------------------- 174 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------------------------------------
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------------------
Confidence 777888888888888887776642 1111 010000
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TDMESYNVMVSFLCTSGRLREAYGVIQE 425 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 425 (556)
.....+..+...+...|++++|...++++.+..+. ++..++..+...|...|++++|++.+++
T Consensus 175 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 175 ----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00111222333444555555555555555443321 1345555666666666666666666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC----
Q 008727 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV---- 501 (556)
Q Consensus 426 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 501 (556)
+.+.... +..+|..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+...
T Consensus 239 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 239 ALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 5554322 45566666666666666666666666666542 33355566666666666666666666666654310
Q ss_pred -------CCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 008727 502 -------APDATTYTSLLEGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 502 -------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (556)
..+...|..+..++...|+.+.+..+.++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 00245566666677777777666665554
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.4e-16 Score=149.02 Aligned_cols=280 Identities=9% Similarity=-0.003 Sum_probs=128.0
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+.|.++++.. +++.+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|+..
T Consensus 17 ~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3467789888866 3446999999999999999999999965 25777999999999999999999998
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCC
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (556)
++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8777664 4467889999999999999999998885 367789999999999999999999999966
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 008727 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (556)
Q Consensus 222 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (556)
..|..++.++.+.|++++|.+.+.++. +..+|..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 367889999999999999999999982 789999999999999999999554443 2233344557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHH
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVP------TLSTLSNLSKN 374 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~ll~~ 374 (556)
++..|.+.|.++++..+++...... +-....|+-+--.+++-.+++.++.++...+. +++| +...|..+.-.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988765 44566677776667766666665555543222 1111 23445556666
Q ss_pred HHhcCChHHHHH
Q 008727 375 LCKRNKSDELVE 386 (556)
Q Consensus 375 ~~~~g~~~~a~~ 386 (556)
|...++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 667777776655
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.1e-14 Score=146.54 Aligned_cols=384 Identities=13% Similarity=0.139 Sum_probs=283.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (556)
.++.--...+++|...|.+.+|.++++.+.-.+ ..-+....+.|+.+..+. +..+..+..+..... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 344445566777888888888888888877432 113345556666666666 556666666555321 1344
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc
Q 008727 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (556)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (556)
+...+...|.+++|..+|++... .....+.++ -..+++++|.++.+++ ....+|..+..++...
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhC
Confidence 67778889999999999998631 112223332 2678899999998855 3368888999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 240 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++......+..+|.+.++++....+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999764 378889999999999999999999999877754 33334445888999999988644432
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc
Q 008727 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (556)
+ +. .....++..-..+..|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +
T Consensus 1191 ----~-~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ----N-GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ----h-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 11 1233444444456689999999999885 478999999999999999999999772 6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
..+|..+-.+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998877643 2366778899999999999999999998888654 4456677777777
Q ss_pred HHcc--CCHHHHHHHHHHHHHCCCCC------CHhhHHHHHHHHHccCCHHHHHH
Q 008727 480 FSEV--GEIEGALRLFHNMLEKGVAP------DATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 480 ~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
|++. ++..++.+.|..-. .+.| +...|..++..|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7764 45555555555433 2222 46679999999999999999984
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.5e-16 Score=152.18 Aligned_cols=267 Identities=9% Similarity=-0.034 Sum_probs=150.9
Q ss_pred ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 008727 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (556)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (556)
+...|..+...+.+.|++++|.+.|+++.+... .+..++..+...+...|++++|++.|+++... .|.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHH
Confidence 334466666666666666666666666665432 24556666666666666677777666666655 44556666667
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDF-----------IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (556)
...|...|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.++++.+....
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 209 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-------- 209 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS--------
T ss_pred HHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC--------
Confidence 77777777777777777776653 1221 12222344445555555555555554443211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 008727 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (556)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 381 (556)
.++..++..+...+...|++
T Consensus 210 ------------------------------------------------------------~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 210 ------------------------------------------------------------MIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp ------------------------------------------------------------SCCHHHHHHHHHHHHHHTCH
T ss_pred ------------------------------------------------------------ccCHHHHHHHHHHHHHCCCH
Confidence 01233334444445555555
Q ss_pred HHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHH
Q 008727 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461 (556)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (556)
++|...++++.+..+. +..+|..+...|...|++++|+..++++.+.... +..++..+..+|...|++++|...|+++
T Consensus 230 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555544332 4556666666666666666666666666665322 3566666666677777777777777666
Q ss_pred HHcCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 462 FASGC-----------SGNLKTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 462 ~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
.+..- ..+...|..+..++...|+.+.+.++.++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 308 LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 65310 01256677777777777777777666554
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-16 Score=149.47 Aligned_cols=237 Identities=10% Similarity=0.111 Sum_probs=75.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK 175 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 175 (556)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456778888877766 33458888888888888888888888653 366688888888888888888888
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 008727 176 MFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 176 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 255 (556)
.++...+. .++..+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---------C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 66655553 34566777788888888888887776631 23357777888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 008727 256 ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335 (556)
Q Consensus 256 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (556)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHH
Confidence 36777888888888888888888776 2566788888888888888887543322 112222222
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 336 ALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376 (556)
Q Consensus 336 ~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 376 (556)
.++..|. .|.+++|+.+++...... .-....|+-+.-+|+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 3333333 245555555555444333 233444444433333
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=7.8e-16 Score=144.56 Aligned_cols=278 Identities=10% Similarity=-0.013 Sum_probs=180.7
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008727 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270 (556)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 270 (556)
.+..+...+...|++++|..+|+.+... .|.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3444445555556666666666655544 34445555556666666666666666666665542 2244555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 008727 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (556)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (556)
+...|++++|.+.++++.+..... ...+..+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------------------------- 132 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQA--------------------------------------------- 132 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-TTC----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHH---------------------------------------------
Confidence 666666666666666655432111 0011000000
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 351 VFFNFMIEKGRVPTLSTLSNLSK--NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
.|+......+.. .+...|++++|.+.++.+.+..+. +...+..+...|...|++++|.+.++++.+
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 133 -----------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000111111111 255667788888888887765543 677888888888888999999999988887
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP----- 503 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----- 503 (556)
.... +..++..+...+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+.....
T Consensus 201 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 201 LRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 6432 57788888889999999999999999988764 4567788889999999999999999999988653221
Q ss_pred ------CHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 504 ------DATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 504 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+...|..+..++.+.|++++|..++++.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 36778888899999999999999887654
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=3.9e-15 Score=136.52 Aligned_cols=150 Identities=10% Similarity=0.058 Sum_probs=73.4
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
...|+++.|+..++.+....+.........+.++|...|+++.|+..++. .-.|+..++..+...+...|+.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 33455555555444433221111112333444555555555555443322 12233444444444455555555555
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+.++.+... +..|.+...+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|.+.++++.+
T Consensus 86 ~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 86 AELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555554433 22344444455555566666666666666654 23455555666666666666666666666555
Q ss_pred c
Q 008727 290 L 290 (556)
Q Consensus 290 ~ 290 (556)
.
T Consensus 159 ~ 159 (291)
T 3mkr_A 159 Q 159 (291)
T ss_dssp H
T ss_pred h
Confidence 4
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.6e-14 Score=139.86 Aligned_cols=386 Identities=10% Similarity=-0.054 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-----C---CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC-----
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-----K---ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN----- 148 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 148 (556)
.....||.+..++...|++++|++.|++..+. + -+....+|+.+...|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566778878888888888888888776542 1 1223556777777778888888888777776431
Q ss_pred C--CCCChHhHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCccC-hhhHHHHHHH---HHhhCcHHHHHHHHHHHHhccC
Q 008727 149 C--EDIGPEICNSLLAVLASD--GYIDNALKMFDEMSHRGVEFS-TIGFGVFIWK---FCENAKLGQVLSMLDEVRKREN 220 (556)
Q Consensus 149 ~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~ 220 (556)
+ ......+++.+..++... +++++|++.|++..+.+ |+ ...+..+... +...++.++|++.++...+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-- 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-- 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--
Confidence 0 011344555555555443 35777777777776643 32 2233333323 22345556677777666655
Q ss_pred CCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 221 SMINGSVIAVLIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 221 ~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
.|.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.... +.
T Consensus 205 -~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 281 (472)
T 4g1t_A 205 -NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA 281 (472)
T ss_dssp -CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred -CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence 44444555444433332 345666777776665542 224555666666666777777777776666554221 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLC 376 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 376 (556)
..+..+...|...+.... ... .........
T Consensus 282 ~~~~~lg~~y~~~~~~~~-------------------------------------------~~~-------~~~~~~~~~ 311 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVM-------------------------------------------NLR-------ENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------------------------------------HC-------------CHHH
T ss_pred HHHHHHHHHHHHHHHHhh-------------------------------------------hHH-------HHHHHHHHH
Confidence 222222222211100000 000 000000011
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHH-HHhhcCChhh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS--FYNSLME-ACCREDLLRP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~ 453 (556)
..+..+.|...++...+..+. +...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 112345566666665554332 44466666777777777777777777766654332211 1222221 2235567777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
|+..|++..+. .|+....... ...+.+++++..+.. +.+..+|..+...|...|++++|++.|++.++
T Consensus 391 Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 391 AIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777663 4443322211 233344455544432 23566777777777777777777777777776
Q ss_pred CCCc
Q 008727 534 HDVM 537 (556)
Q Consensus 534 ~~~~ 537 (556)
.+..
T Consensus 459 ~~~~ 462 (472)
T 4g1t_A 459 SGSL 462 (472)
T ss_dssp ----
T ss_pred cCCC
Confidence 6543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.1e-14 Score=136.56 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL 164 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 164 (556)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+++.+..+. +..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 445667778888889999999998888765 457778888888888889999999988888776433 677888888888
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 008727 165 ASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~ 184 (556)
...|++++|.+.|+++.+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887754
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1e-14 Score=133.69 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=124.9
Q ss_pred HHHhhCcHHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008727 198 KFCENAKLGQVLSMLDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 276 (556)
.....|++..|+..++..... .|.+ ......+.++|...|+++.|+..++.. -.|+..++..+...+...++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 344456666666555544322 2222 123334455566666666655544321 23444455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 008727 277 VFEREVVLKKKRKLGVAPRTND-YREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
.++|++.++++...+..|+... +..+...+...|++++|.+.+ ++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l----------------------------------~~ 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL----------------------------------HQ 126 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHH----------------------------------TT
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHH----------------------------------hC
Confidence 5555555555555444343222 222223444444444444333 22
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008727 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES---YNVMVSFLCTSGRLREAYGVIQEMKRKGLD 432 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 432 (556)
..+...+..+...+.+.|++++|.+.++.+.+.. |+... ....+..+...|++++|..+|+++.+...
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p- 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS- 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-
Confidence 2344455555555666666666666666655543 22211 11122222334566666666666665522
Q ss_pred CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 008727 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG-ALRLFHNMLEK 499 (556)
Q Consensus 433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 499 (556)
.+...++.+..++.+.|++++|.+.++++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355556666666666666666666666665543 3345556666666666666544 44566665543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.4e-13 Score=136.43 Aligned_cols=379 Identities=10% Similarity=-0.025 Sum_probs=225.9
Q ss_pred ccChhHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-----C--CCCCHHhHHHHH
Q 008727 61 LTHHSLALGFFNWASQQ-------PNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-----K--ITLDSSVYRFII 126 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li 126 (556)
.++.++|++.|..+... ..-+....+|+.+..++...|++++|...+++..+. + ......++..+.
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 57789999999987431 112234678999999999999999999999987652 1 112356666666
Q ss_pred HHHHc--CCChHHHHHHHHHHHhCCCCCChHhHHHHHHHH---HhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 008727 127 PSLIQ--GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL---ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (556)
Q Consensus 127 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 201 (556)
.++.. .+++++|++.|++..+..+. ++..+..+..++ ...++.++|++.|++..+.+. .+..++..+...+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHH
Confidence 55554 45799999999999887544 666776666654 445788899999999887642 244555555555544
Q ss_pred ----hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008727 202 ----NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (556)
Q Consensus 202 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 277 (556)
.|++++|.+.+++.... .|....++..+...|...|++++|.+.|++..+... -+..++..+..+|...+..
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp CC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH
Confidence 36788999999999877 677788889999999999999999999999887632 2455666665555322111
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 278 FEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
.. ... ....+....+.. ..+.|...++...
T Consensus 298 ~~---------~~~--------------~~~~~~~~~~~~---------------------------~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 298 VM---------NLR--------------ENGMYGKRKLLE---------------------------LIGHAVAHLKKAD 327 (472)
T ss_dssp HH---------HC--------------------CHHHHHH---------------------------HHHHHHHHHHHHH
T ss_pred hh---------hHH--------------HHHHHHHHHHHh---------------------------hHHHHHHHHHHHh
Confidence 00 000 000011111111 0133444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008727 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME--SYNVMVS-FLCTSGRLREAYGVIQEMKRKGLDPD 434 (556)
Q Consensus 358 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~ 434 (556)
+... .+...+..+...+...|++++|...|++..+....+... .+..+.. .+...|+.++|+..+++..+. .|+
T Consensus 328 ~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~ 404 (472)
T 4g1t_A 328 EAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQK 404 (472)
T ss_dssp HHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCC
T ss_pred hcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 4321 234455666777788888888888888877655443221 2222222 234567888888888887775 344
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhhH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTY 508 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 508 (556)
...... ....+.++++...+.. +.+..+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 405 ~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 405 SREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred cHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 322221 2233455555555543 5567788888888888888888888888888764 34444433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=2.1e-13 Score=119.36 Aligned_cols=209 Identities=11% Similarity=-0.042 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
+++..+..+...+.+.|++++|...|+...+.. |.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344555555555555566666666665555543 344555555555555555555555555555554322 444555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
.++.+.+.. . .. .....|++++|+..++...+. .|.+...+..+...+...|+
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCC
Confidence 555544000 0 00 000115566666666555554 44445555555666666666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++|++.|++..+.. .+...+..+..++...|++++|+..|++..+.... +...+..+...+...|++++|...++.
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666655544 45555556666666666666666666665553211 233444455555555666555555544
Q ss_pred H
Q 008727 322 I 322 (556)
Q Consensus 322 ~ 322 (556)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 3
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.1e-13 Score=121.07 Aligned_cols=226 Identities=11% Similarity=-0.021 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--C----hHhH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--G----PEIC 157 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 157 (556)
...|..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|.+.+++..+..... + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999998877 778899999999999999999999999987643221 1 5789
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHh
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (556)
..+...+...|++++|.+.|++..+.. |+. ..+...|++++|.+.++.+... .|.....+..+...+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHH
Confidence 999999999999999999999988854 332 3566778999999999998876 5666778888999999
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008727 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317 (556)
Q Consensus 238 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (556)
..|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999988763 23677888899999999999999999999887642 245567777888888898888888
Q ss_pred HHHHHHcC
Q 008727 318 LGEVIVSG 325 (556)
Q Consensus 318 ~~~~~~~~ 325 (556)
.++.+.+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.4e-13 Score=119.83 Aligned_cols=157 Identities=10% Similarity=0.089 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++...... +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence 33444444555555555555555544432 121 2233445555555555555554211 3345555555566
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.++++.+.. +.+...|..+...+.+.|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666666666666665543 3345556666666666666666666666665542 1235555556666666666666666
Q ss_pred HHHHhhhCC
Q 008727 527 VFNKSVNHD 535 (556)
Q Consensus 527 ~~~~m~~~~ 535 (556)
.+++..+.+
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 666655544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.8e-13 Score=119.75 Aligned_cols=194 Identities=12% Similarity=0.011 Sum_probs=152.5
Q ss_pred HHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 51 LVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 51 ~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
...........++.+.|+..|+.+.... +.++..|..+...+.+.|++++|...+++..+.. |.+...+..+...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444555678999999999986554 3578889999999999999999999999999876 567889999999999
Q ss_pred cC-----------CChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 008727 131 QG-----------KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKF 199 (556)
Q Consensus 131 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 199 (556)
.. |++++|+..|++..+..+. +..+|..+..++...|++++|++.|++..+.+ .+...+..+...+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99 9999999999999887544 77889999999999999999999999998876 5777888888889
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
...|++++|+..|+...+. .|.+..++..+...+...|++++|.+.|++..
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999877 67777888888888999999999988887654
No 41
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=1.2e-10 Score=117.73 Aligned_cols=449 Identities=9% Similarity=0.012 Sum_probs=276.8
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC---hHHHHHHHHHH
Q 008727 69 GFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN---TQKAFSVFNEV 145 (556)
Q Consensus 69 ~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 145 (556)
.+-+.+...+ .|...|..++..+.+.+.++.+..+|+.+... .|.+...|..-+..-.+.++ .+.+..+|+..
T Consensus 54 ~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 3444444443 48888999998888888899999999988886 36777888888888888888 88999999988
Q ss_pred HhCCC-CCChHhHHHHHHHHHhcCCH--------hHHHHHHHHHHh-CCC-ccC-hhhHHHHHHHHH---------hhCc
Q 008727 146 KFNCE-DIGPEICNSLLAVLASDGYI--------DNALKMFDEMSH-RGV-EFS-TIGFGVFIWKFC---------ENAK 204 (556)
Q Consensus 146 ~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~li~~~~---------~~g~ 204 (556)
..... +|++..|..-+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 77641 36888888888777665543 334467776544 454 443 345665554432 2345
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008727 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (556)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 284 (556)
++.+..+|+..... +.. ....+|..... +.+.-+...+.+++.+. ..+++.|...+
T Consensus 210 ~~~~R~iy~raL~i-P~~-~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQ-PMD-CLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHTTS-CCS-SHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccH-HHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHH
Confidence 56677777776642 110 11122221111 11000000111111110 11223333333
Q ss_pred HHHHhc--CCC---CC-----------------h---hhHHHHHHHHHhcC-------CHHHHHHHHHHHHcCCCCCCHH
Q 008727 285 KKKRKL--GVA---PR-----------------T---NDYREFILGLIVER-------RICEAKELGEVIVSGKFTIDDD 332 (556)
Q Consensus 285 ~~~~~~--~~~---~~-----------------~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 332 (556)
.++... ++. |. . ..|...+.---..+ ..+.+..+|++.+...+ ....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHH
Confidence 332211 110 10 0 12222222211111 12334566777776533 3566
Q ss_pred HHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------Cc---
Q 008727 333 VLNALIGSV-SSIDPRSAI-VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY---------FT--- 398 (556)
Q Consensus 333 ~~~~l~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~--- 398 (556)
.|-.....+ ..|+.++|. ++|+..... .+.+...+...+....+.|+++.|.++|+.+.+... .|
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 666665554 357888897 999998864 344566677788888899999999999999876310 12
Q ss_pred ---------cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhHHHHHHHHHHcCCCC
Q 008727 399 ---------DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMFASGCSG 468 (556)
Q Consensus 399 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 468 (556)
...+|...+....+.|..+.|..+|.+..+.-..+....|......-.+ .++.+.|..+|+...+. ++-
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCC
Confidence 1236888888888889999999999999876111123334333222223 35589999999999987 455
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
+...|...+......|+.+.|..+|++.......+ ....|...+.-=.+.|+.+.+..+.+++.+.-+.. .-+..+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~--~~~~~f 580 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV--NKLEEF 580 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC--CHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cHHHHH
Confidence 67777888888888999999999999998763321 34567777777788999999999999998877542 344444
Q ss_pred HHHH
Q 008727 547 MISL 550 (556)
Q Consensus 547 ~~~~ 550 (556)
++-|
T Consensus 581 ~~ry 584 (679)
T 4e6h_A 581 TNKY 584 (679)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=2.6e-13 Score=132.88 Aligned_cols=377 Identities=9% Similarity=0.018 Sum_probs=172.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCCh---HHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT---QKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
+...+.+.|++++|.+.|+...+.| +...+..|...|...|+. ++|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776655 333444555555556666 6777777766543 45555566554444
Q ss_pred cC-----CHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHH---HHHHHHhccCCCCCchhhHHHHHHHHhc
Q 008727 167 DG-----YIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS---MLDEVRKRENSMINGSVIAVLIIHGFCK 238 (556)
Q Consensus 167 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (556)
.+ ++++|.+.|++..+.|. ...+..|...|...+..+++.+ .+...... .+......|...|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-----g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-----GYPEAGLAQVLLYRT 153 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-----TCTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-----CCHHHHHHHHHHHHc
Confidence 43 56667777777666552 2244445555555444333222 22222222 112333444455555
Q ss_pred cCCHHHHH----HHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 008727 239 GKRVEEAF----KVLDELRIRECKPDFIAYRIVAEEFKLMG---SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (556)
Q Consensus 239 ~~~~~~A~----~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (556)
.+.++.+. .+++..... +...+..+...|...| +.++|++.|++..+.|... ...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g-- 226 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDA-- 226 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCG--
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCC--
Confidence 44333222 222222221 1124444444444455 4555555555544443221 11111222222221
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHH
Q 008727 312 ICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-L--CKRNKSDELVEVY 388 (556)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~ 388 (556)
.....+.++|+..|++.. .| +...+..+... + ...+++++|.+.|
T Consensus 227 ----------------------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 227 ----------------------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp ----------------------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred ----------------------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 000124555555555554 22 22333333333 2 3466677777777
Q ss_pred HHHHhCCCCccHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHH
Q 008727 389 KVLSANDYFTDMESYNVMVSFLCTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWD 459 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~ 459 (556)
++..+.| +...+..+...|. .| +.++|.+.|++.. .| +...+..+...|.. ..+.++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 7666654 4555556665555 34 6777777777665 22 45555556655554 336777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 460 QMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 460 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
+..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 777655 23334455555553 34677777777777766532 22222222222223345556666665543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=6.7e-13 Score=129.89 Aligned_cols=373 Identities=9% Similarity=-0.039 Sum_probs=215.3
Q ss_pred hhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC--
Q 008727 59 YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI---NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-- 133 (556)
Q Consensus 59 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-- 133 (556)
+..++...|++.|..+... + ++..+..+...+...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 3456789999999998654 3 444556666777778888 8999999988754 5667777777565555
Q ss_pred ---ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH---HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 134 ---NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN---ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 134 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
+.++|...|++..+.|. ...+..|...|...+..++ +.+.+......| +......+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 78899999999998763 4488888888887766444 455555555444 34566667777888875555
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CCHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK---RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM----GSVFER 280 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a 280 (556)
+......+.+. - ...++..+..|...|.+.| +.++|++.|+...+.|. ++...+..+...|... ++.++|
T Consensus 160 ~~~~a~~~~~~-a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKA-A-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHH-H-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHH-H-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 44443333222 0 1122337777888899999 99999999999998873 4555556666666554 688888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILG-L--IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMI 357 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 357 (556)
.+.|++.. .| +...+..+... + ...++.++|.+.|+...+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------------------- 279 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------------------- 279 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------------------------------
Confidence 88888876 22 22333333333 2 234555555555555444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 008727 358 EKGRVPTLSTLSNLSKNLCKRN-----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKR 428 (556)
Q Consensus 358 ~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 428 (556)
.| +...+..+...|. .| ++++|.+.|++.. . -+...+..+...|.. ..+.++|..+|++..+
T Consensus 280 -~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 280 -AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp -TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred -CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 33 3334444444444 33 6777777777665 2 255566666666655 3377888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 429 KGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.|. ......|...|.. ..+.++|...|+...+.| .++.......+......++..+|..+.++..+
T Consensus 351 ~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 351 NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 653 3345555555543 457788888888887766 33333332333333334455666666666543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.9e-12 Score=116.27 Aligned_cols=201 Identities=9% Similarity=-0.039 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4667788888899999999999999988865 557888889999999999999999999998876543 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++.+... .|.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999988733334 4566777888888899999999999988876 455677788888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
++|.+.|+...+.. ..+...+..+...+...|+.++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998887653 245667777888888888888888888888775
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=2.2e-12 Score=113.54 Aligned_cols=203 Identities=9% Similarity=-0.090 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..|..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++...... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45667777778888888888888888877754 456777777888888888888888888887765433 6677788888
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 163 VLASD-GYIDNALKMFDEMSHRGVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 163 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+... .|.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcC
Confidence 88888 88888888888877732222 2456666777777778888888888777765 4455666777777777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
++++|.+.|++..+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888777777766432135556666666667777777777777776543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=5.8e-13 Score=121.42 Aligned_cols=246 Identities=9% Similarity=-0.072 Sum_probs=188.9
Q ss_pred cChhHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHH
Q 008727 62 THHSLALGFFNWASQQPNFT--HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAF 139 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 139 (556)
++.+.|+..|+.+....... .+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 45788999999887653222 246778888999999999999999999999875 557889999999999999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhcc
Q 008727 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRE 219 (556)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 219 (556)
+.|+++....+. +..++..+..++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999999886543 68899999999999999999999999998853 45555555555667789999999999888766
Q ss_pred CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 008727 220 NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP---DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
.+++...+. ++..+...++.++|.+.+.......... +...+..+...+...|++++|...|++..+.. |+.
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 344444444 6777888888999999999887652111 14677888888999999999999999988753 322
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233344666667777766554
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.7e-12 Score=118.20 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 008727 263 AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS 342 (556)
Q Consensus 263 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (556)
.+......+...|++++|+..+++..+.... +...+..+...+...|++++|.+.++.+.+....++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 71 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK------------ 71 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh------------
Confidence 3444556667777777777777777664321 233555666667777777777766666655221111
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.....+..+...+...|++++|.+.++...+..+. +...+..+...|...|++++|...
T Consensus 72 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 72 --------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 11223444555555556666666666555554332 444555566666666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHC
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE---IEGALRLFHNMLEK 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~ 499 (556)
+++..+.... +...|..+...+...+++++|.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 6655554221 34444444422223346666666666665542 2234555555555555555 55555555555443
Q ss_pred C-CCCC------HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 G-VAPD------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
. -.|+ ...|..+...|.+.|++++|.+.++++.+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 1 1122 13455555556666666666666666655543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.5e-11 Score=111.91 Aligned_cols=226 Identities=11% Similarity=0.014 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 008727 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV----ERRICEAKELGEVIVSGKFTIDDDVLN 335 (556)
Q Consensus 260 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (556)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~------------------------- 56 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK------------------------- 56 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-------------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC-------------------------
Confidence 34455555556666666666666666655521 22233333344444 44
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHH
Q 008727 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411 (556)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (556)
++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 57 ---------~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 57 ---------NLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 4555555555555554 55666667777777 888888888888888764 6677888888888
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 008727 412 T----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE- 482 (556)
Q Consensus 412 ~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 482 (556)
. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 8 888999999998888865 56677777778877 888999999999888754 45677788888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 483 ---VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 483 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+++++|.+.|++..+.+ +...+..+...|.+ .+++++|.+++++..+.++.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 899999999999988774 25667777888888 88999999999988887754
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.7e-12 Score=116.77 Aligned_cols=236 Identities=8% Similarity=-0.026 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLA 162 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 162 (556)
..+......+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++.......+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566677778888888888888887765 3455677778888888888888888888887733221 1234788888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.+...|++++|.+.|++..+... .+..++..+...+...|++++|++.++..... .|.+...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877542 24567777778888888888888888877755 556666676666233334588
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCCh------hhHHHHHHHHHhcCCH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS---VFEREVVLKKKRKLG-VAPRT------NDYREFILGLIVERRI 312 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~------~~~~~ll~~~~~~~~~ 312 (556)
++|.+.|++..+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+. ..+..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888877652 1235666667777777776 777777777766542 12221 3455566667777777
Q ss_pred HHHHHHHHHHHcCC
Q 008727 313 CEAKELGEVIVSGK 326 (556)
Q Consensus 313 ~~a~~~~~~~~~~~ 326 (556)
++|.+.++.+.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777766543
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=2.7e-11 Score=110.27 Aligned_cols=224 Identities=12% Similarity=-0.022 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChHhHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ----GKNTQKAFSVFNEVKFNCEDIGPEICN 158 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (556)
++..+..+...+...|++++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.+ ++.++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677777777888888888888888887743 55677777788888 888888888888887765 677788
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHh----hCcHHHHHHHHHHHHhccCCCCCchhhHH
Q 008727 159 SLLAVLAS----DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE----NAKLGQVLSMLDEVRKRENSMINGSVIAV 230 (556)
Q Consensus 159 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|+...+. + +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C----cHHHHH
Confidence 88888888 888888888888887765 55666667777777 78888888888877765 2 344555
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 008727 231 LIIHGFCK----GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL----MGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (556)
Q Consensus 231 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (556)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+. ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHH
Confidence 66666666 778888888887777653 45666667777777 7777777777777766542 3344555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHcCC
Q 008727 303 ILGLIV----ERRICEAKELGEVIVSGK 326 (556)
Q Consensus 303 l~~~~~----~~~~~~a~~~~~~~~~~~ 326 (556)
...+.. .+++++|.+.++...+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555 666666666666655543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=6.1e-12 Score=119.20 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC-hHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN-TQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
...|..+..++...|++++|+..++.+++.. +-+...|..+...+...|+ +++|+..|+++....+. +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4667788888899999999999999999876 5678899999999999996 99999999999987655 8889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhc-cCC
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKR 241 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~ 241 (556)
++...|++++|+..|+++.+.+. -+...|..+..++...|++++|+..++++... .|.+..+|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999998753 36678888999999999999999999999987 77788899999999988 666
Q ss_pred HHHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----
Q 008727 242 VEEA-----FKVLDELRIRECKPDFIAYRIVAEEFKLMG--SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVER---- 310 (556)
Q Consensus 242 ~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 310 (556)
.++| ++.|++...... -+...|..+...+...| ++++|++.+.++ + ....+...+..+...+.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 478888776532 25678888888888887 688999988887 2 22234456667777777763
Q ss_pred -----CHHHHHHHHHHH-HcCC
Q 008727 311 -----RICEAKELGEVI-VSGK 326 (556)
Q Consensus 311 -----~~~~a~~~~~~~-~~~~ 326 (556)
..++|.++++.+ .+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhC
Confidence 257888888887 5543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=8.1e-12 Score=112.19 Aligned_cols=193 Identities=13% Similarity=0.043 Sum_probs=157.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++|.
T Consensus 48 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 48 LQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHH
Confidence 34567777777777776654 335677888888899999999999999998876543 6778888999999999999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 421 GVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 421 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
++++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999988733344 45678888889999999999999999998864 456788889999999999999999999999865
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 500 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
. +.+...+..+...+.+.|++++|.++++++.+.++.
T Consensus 205 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 205 G-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp S-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred C-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 3 335677888888899999999999999999887643
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=6.6e-12 Score=118.99 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 008727 262 IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR-ICEAKELGEVIVSGKFTIDDDVLNALIGS 340 (556)
Q Consensus 262 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (556)
..|..+...+...|++++|++.+++.++.... +...|..+...+...|+ +++|...++.++...+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------ 164 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------ 164 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------------
Confidence 45566666666777777777777776664221 23345555555556664 66666655555544322
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+...|..+..++...|++++|+..|+++.+..+. +...|..+..++...|++++|+
T Consensus 165 -----------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 -----------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHH
T ss_pred -----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHH
Confidence 3455555555666666666666666666665544 5566666666666666677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHH
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPA-----KKLWDQMFASGCSGNLKTYNILISKFSEVG--EIEGALRL 492 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~ 492 (556)
..++++++.... +...|+.+..++.. .|..++| ++.+++.++.. +-+...|+.+...+...| ++++|++.
T Consensus 221 ~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 777666665443 55666666666666 4444555 35666666543 334556666666666666 46666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC---------CHHHHHHHHHHh-hhCCC
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQET---------NLQAAFEVFNKS-VNHDV 536 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~~~ 536 (556)
+.++ +. -..+...+..+...|.+.| ..++|+++++++ .+.++
T Consensus 299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 6665 22 2224455566666665543 246677777766 55554
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=6.1e-12 Score=110.69 Aligned_cols=204 Identities=11% Similarity=-0.022 Sum_probs=153.8
Q ss_pred CCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
.+...+..+...+...|++++|.+.|+.+.+.... +..++..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 35667788888888899999999999888776433 67788888888888899999999988887754 23556777788
Q ss_pred HHHHhh-CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008727 197 WKFCEN-AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275 (556)
Q Consensus 197 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 275 (556)
..+... |++++|...++.+... +..+.....+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 888888 8888888888888872 4456666777788888888888888888888877653 224677777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
++++|...+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888877654323444555556666777777777777666654
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.4e-12 Score=116.47 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.++..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++...... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345566677777778888888888888887754 456777888888888888888888888888766433 677888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 241 (556)
..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+... .|.+...+..+...+.+.|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCC
Confidence 88888888888888888877754 235566777777788888888888888887766 45556677777888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
+++|.+.|++..+.. ..+..++..+...+...|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888888776653 235667777777788888888888888777664
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=2.7e-12 Score=117.02 Aligned_cols=182 Identities=9% Similarity=-0.134 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHhCCCC---CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHH
Q 008727 133 KNTQKAFSVFNEVKFNCED---IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (556)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 209 (556)
|++++|+..|+++.+.... .+..+|..+...+...|++++|.+.|++..+.+. .+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443211 1234555555555555555555555555554321 23445555555555555555555
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+.|+.+... .|.+..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555554 3344555566666666666666666666666554 23333333333444455666666666655554
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 290 LGVAPRTNDYREFILGLIVERRICEAKELGEVI 322 (556)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (556)
... ++ .....+...+...++.++|.+.+...
T Consensus 173 ~~~-~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 173 KSD-KE-QWGWNIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HSC-CC-STHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cCC-cc-hHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 321 11 11222333444444444444444443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=3e-12 Score=114.28 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|.+.++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 134 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 444555555566666666666666665554332 4555666666666666666666666666654322 45556666666
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...|.+.|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHH
Confidence 666666666666666666543 3345566666666666666666666666666542 22455566666666666666666
Q ss_pred HHHHHHhhhCCCc
Q 008727 525 FEVFNKSVNHDVM 537 (556)
Q Consensus 525 ~~~~~~m~~~~~~ 537 (556)
.+.++++.+.++.
T Consensus 213 ~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 213 LEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHccCcc
Confidence 6666666665543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1e-11 Score=105.54 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+..+|..+...|.+.|++++|++.|++..+..+. +...+..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678888999999999999999999999887665 7788999999999999999999999999887544 6777888888
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
.+...++++.|.+.+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... -+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 55688899999999999999999999999987642 367788999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 008727 524 AFEVFNKSVNHDV 536 (556)
Q Consensus 524 a~~~~~~m~~~~~ 536 (556)
|++.|++.++.++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988764
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=3.4e-09 Score=107.31 Aligned_cols=438 Identities=9% Similarity=-0.011 Sum_probs=263.3
Q ss_pred CCHHHHHHHhhhhhc-cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhHhCC-CCCCHHh
Q 008727 47 LSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ---INAIDSVLKQVKVNK-ITLDSSV 121 (556)
Q Consensus 47 ~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 121 (556)
.+...-.+.++.... +....+...|+.+.... +.+...|...+..-.+.++ ++.+..+|++..... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 455555556655443 34566777787776553 4677888888888888888 999999999998864 2488888
Q ss_pred HHHHHHHHHcCCCh--------HHHHHHHHHHHh-CCC-CC-ChHhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 008727 122 YRFIIPSLIQGKNT--------QKAFSVFNEVKF-NCE-DI-GPEICNSLLAVLAS---------DGYIDNALKMFDEMS 181 (556)
Q Consensus 122 ~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 181 (556)
|..-+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766665543 344578887654 455 44 45689888877653 345778899999988
Q ss_pred hCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh--CCCC-
Q 008727 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECK- 258 (556)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~- 258 (556)
......-..+|.... .+.+.-+...+.+++.+. ..+++.|...+.++.. .++.
T Consensus 222 ~iP~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e~-----------------------~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 222 CQPMDCLESMWQRYT-QWEQDVNQLTARRHIGEL-----------------------SAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp TSCCSSHHHHHHHHH-HHHHHHCTTTHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHTTTCCC
T ss_pred hCccHHHHHHHHHHH-HHHHhcCcchHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHhHhh
Confidence 532211122333222 111110000111111111 1122333333333211 0100
Q ss_pred --------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 008727 259 --------------P-----D---FIAYRIVAEEFKLMG-------SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (556)
Q Consensus 259 --------------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (556)
| + ...|...+.---..+ ..+.+..+|++.+..- .-....|.....-+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Confidence 1 0 123333333222211 1233455676666542 22445666666666677
Q ss_pred CCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcC---------CCCC------------HH
Q 008727 310 RRICEAK-ELGEVIVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKG---------RVPT------------LS 366 (556)
Q Consensus 310 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~ 366 (556)
|+.++|. ++++......+ .+...|-..+.. ...|+++.|.++|+.+.+.. ..|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888886 88888876433 344444444444 33578888888888877531 0132 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
+|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+...+.- .-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 56777777778889999999999988761112233443333333333 45899999999888762 23566667778877
Q ss_pred hhcCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCS--GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
...|+.+.|..+|++....... -....|...+..-.+.|+.+.+.++.+++.+. .|+......++.-|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8889999999999999876421 13467888888888899999999999999876 34544444444444
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=9.5e-12 Score=120.39 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 471 (556)
++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455566666666666666666665543210 011 225566666666666666666666665532 1000 034
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666666666654210 001 33455566666666666666666666543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=5.8e-12 Score=122.23 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-----PDV 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 435 (556)
..+..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++..+.... ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35555666677777777777777766542110 01 225666667777777777777777765543110 013
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++..+...|...|++++|.+.+++..+. +. .....++..+...|...|++++|.+.+++..+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666666677777777777777666543 10 011335556666666777777777777666643
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=9.6e-12 Score=120.37 Aligned_cols=99 Identities=17% Similarity=0.053 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD----SSVYRFIIPSLIQGKNTQKAFSVFNEVKFN----CEDI-G 153 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 153 (556)
....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444455555556666666666666655543 122 234555555555566666666655554321 1111 1
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
..++..+...+...|++++|...+++..+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444555555555555555555555443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=9.2e-12 Score=120.84 Aligned_cols=280 Identities=14% Similarity=0.064 Sum_probs=198.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-Ch
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKL----GVAP-RT 296 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 296 (556)
...+..+...+...|++++|.+.|++..+.+.. +. ..|..+...+...|++++|...+++..+. +..| ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344456777888899999999999988876322 22 46777888888899999999988877653 1111 22
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 008727 297 NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR-VPTLSTLSNLSKNL 375 (556)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 375 (556)
..+..+...+...|++++|...++...+. +... +. .....++..+...|
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------~~~~---~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL---------------------------ARQL---GDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------HHHh---hchHHHHHHHHHHHHHH
Confidence 34555666777777777777776654331 1111 11 11234566677778
Q ss_pred HhcCC-----------------hHHHHHHHHHHHhC----CC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 008727 376 CKRNK-----------------SDELVEVYKVLSAN----DY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD- 432 (556)
Q Consensus 376 ~~~g~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 432 (556)
...|+ +++|.+.+++..+. +. ......+..+...|...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 88888 88888888776442 11 113347888889999999999999999987764211
Q ss_pred CC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----
Q 008727 433 PD----VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CS---GNLKTYNILISKFSEVGEIEGALRLFHNMLEK---- 499 (556)
Q Consensus 433 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 499 (556)
++ ..++..+...|...|++++|.+.+++..+.. .. ....++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 2378889999999999999999999887641 00 12567888999999999999999999998764
Q ss_pred CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 500 GV-APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 500 g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+. .....++..+...|.+.|++++|.+++++..+...
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11 11134677888999999999999999999876543
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.4e-10 Score=107.34 Aligned_cols=219 Identities=7% Similarity=-0.016 Sum_probs=164.6
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLS-------LSRQI-------NAIDSVLKQVKVNKITLDSSVYRFIIPSLI 130 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 130 (556)
+.|+..|+.+.... +.++..|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666777665533 246778887777765 35776 889999999888422456778888999999
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHH-hhCcHHHH
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQV 208 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a 208 (556)
+.|++++|.++|+++.+..+. +.. +|..++..+.+.|++++|.++|++..+.+. .+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875332 344 899999999999999999999999887642 23444443332222 26899999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008727 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE-CKP--DFIAYRIVAEEFKLMGSVFEREVVLK 285 (556)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 285 (556)
..+|+...+. .|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888876 55667888888888888899999999999888763 344 45678888888888888888888888
Q ss_pred HHHhc
Q 008727 286 KKRKL 290 (556)
Q Consensus 286 ~~~~~ 290 (556)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=3.7e-11 Score=102.02 Aligned_cols=167 Identities=7% Similarity=-0.078 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
++..|..+...+.+.|++++|.+.|++..+.. |-+...+..+...|.+.|++++|...++........ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666666554 345556666666666666666666666666554332 4555555556
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
.+...++++.|.+.+.+..+... .+...+..+...+...|++++|++.|++..+. .|.+..++..+...|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCH
Confidence 66666666666666666555321 23444555555555666666666666655554 344455555555566666666
Q ss_pred HHHHHHHHHHhhC
Q 008727 243 EEAFKVLDELRIR 255 (556)
Q Consensus 243 ~~A~~~~~~m~~~ 255 (556)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666555543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=3.1e-10 Score=105.12 Aligned_cols=219 Identities=7% Similarity=-0.047 Sum_probs=167.9
Q ss_pred hHHHHHHHHhHhCCCCCCHHhHHHHHHHHH-------cCCCh-------HHHHHHHHHHHh-CCCCCChHhHHHHHHHHH
Q 008727 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLI-------QGKNT-------QKAFSVFNEVKF-NCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 165 (556)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++... ..+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 67888898888864 567888888887775 35886 899999999988 333 36779999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCccC-hh-hHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH-hccCCH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFS-TI-GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF-CKGKRV 242 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~ 242 (556)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .|.....|....... ...|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999885 344 33 7888888888999999999999999876 344455554433332 236999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLG-VAPR--TNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
++|.++|+...+.. .-+...|..++..+.+.|+.++|..+|++..... ..|+ ...|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999887652 2266788888888888999999999999988863 3443 446677777777788888888887
Q ss_pred HHHHcCCC
Q 008727 320 EVIVSGKF 327 (556)
Q Consensus 320 ~~~~~~~~ 327 (556)
+.+.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 77765433
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=3.5e-11 Score=112.92 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhC----C-CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhhcCC
Q 008727 381 SDELVEVYKVLSAN----D-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDL 450 (556)
Q Consensus 381 ~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~ 450 (556)
+++|.+.++...+. + .......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 67777666654331 1 1112346777888888999999999999887653111 11 2377888888999999
Q ss_pred hhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHccCC
Q 008727 451 LRPAKKLWDQMFASGC-SGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVA-PDATTYTSLLEGLCQETN 520 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~l~~~~~~~g~ 520 (556)
+++|.+.+++..+..- ..+ ..++..+...|...|++++|.+.+++..+. +-. ....++..+...|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999988875310 111 557788889999999999999999988754 111 113467778888999999
Q ss_pred HHHHHHHHHHhhhCC
Q 008727 521 LQAAFEVFNKSVNHD 535 (556)
Q Consensus 521 ~~~a~~~~~~m~~~~ 535 (556)
+++|...+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999987654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=5.2e-11 Score=114.29 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 008727 269 EEFKLMGSVFEREVVLKKKRKLGV-APR----TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS 343 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (556)
..+...|++++|...+++..+.-. .++ ...+..+...+...|+++.|...+....+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------- 171 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE------------------- 171 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 345566666666666666654310 111 12444555556666666666665544332
Q ss_pred CChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-ccHhhHHHHHHHHHhcCCH
Q 008727 344 IDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFLCTSGRL 416 (556)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~ 416 (556)
++.. .+. .....++..+...|...|++++|...+++..+. +-. ....++..+...|...|++
T Consensus 172 --------~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 172 --------IYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp --------HHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------HHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 1111 000 001345666777788888888888888876642 111 1123778888889999999
Q ss_pred HHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC--
Q 008727 417 REAYGVIQEMKRK----GL-DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGNLKTYNILISKFSEVGE-- 485 (556)
Q Consensus 417 ~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~-- 485 (556)
++|.+.+++..+. +. .....++..+...|...|++++|.+.+++..+. +-+.....+..+...|...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999887762 22 223567888888999999999999999887753 212223345677788888888
Q ss_pred -HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 486 -IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 486 -~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.++|+.++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 321 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777665 33332 34567788889999999999999998754
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=3.6e-11 Score=112.90 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----H
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDY-----FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----V 435 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~ 435 (556)
..+..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4566677788889999999998888664211 112337788888899999999999999987653111 11 4
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++..+...+...|++++|...++++.+. +-. ....++..+...|...|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 57788889999999999999999988753 111 11457788899999999999999999999865
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=6.2e-12 Score=116.82 Aligned_cols=248 Identities=12% Similarity=0.034 Sum_probs=139.8
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 008727 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-------ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL----- 290 (556)
Q Consensus 223 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 290 (556)
|....++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334556667777777788888888877777652 11223456677777778888888888888776653
Q ss_pred -CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008727 291 -GVAP-RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368 (556)
Q Consensus 291 -~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (556)
+-.| ....+..+...+...|++++|.+.++.+.+. ...............+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------------------------REKVLGKDHPDVAKQL 156 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------HHHHHCTTCHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------HHHhcCCCChHHHHHH
Confidence 1112 2334556666777777777777766554331 1111111111124456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC------CCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSAN------DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-------GLDPD 434 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~ 434 (556)
..+...+...|++++|.++++.+.+. +..| ...++..+...|...|++++|.+.++++.+. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66777788888888888888877653 1112 3446777888888888888888888887653 11111
Q ss_pred H-------hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 435 V-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 435 ~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
. ..+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222233334455555555555555432 23445566666677777777777777766654
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=2.9e-10 Score=109.05 Aligned_cols=235 Identities=9% Similarity=-0.053 Sum_probs=163.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-----hhhHH
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-PR-----TNDYR 300 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~ 300 (556)
....+...|++++|.+.|++..+. +-.+ ...++..+...+...|++++|...+.+..+.-.. ++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888999999988887653 1111 2356777888888899999999888877654111 11 22455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 008727 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRN 379 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g 379 (556)
.+...|...|++++|.+.++...+. ... .+.. ....++..+...|...|
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~---------------------------~~~---~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM---------------------------AEA---EKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---------------------------HHH---TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH---------------------------HHH---cCChHHHHHHHHHHHHHHHHCC
Confidence 6666777778888777776655431 111 1101 11245677888899999
Q ss_pred ChHHHHHHHHHHHh-----CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHhHHHHHHHHHhhcCC
Q 008727 380 KSDELVEVYKVLSA-----NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG----LDPDVSFYNSLMEACCREDL 450 (556)
Q Consensus 380 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~ 450 (556)
++++|.+.+++..+ ...+....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999988776 3313346678889999999999999999999876531 11122335678888888898
Q ss_pred ---hhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 451 ---LRPAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 451 ---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+++|..++++. +..| ....+..+...|...|++++|.+.+++..+.
T Consensus 319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777665 2233 3456778899999999999999999998753
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=3.7e-11 Score=111.52 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC-------CCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC------C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVN-------KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN------C 149 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 149 (556)
+...+..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666677777777777777777776652 12233445556666666666666666666665432 1
Q ss_pred C-CCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhh
Q 008727 150 E-DIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI 228 (556)
Q Consensus 150 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 228 (556)
. +....++..+...+...|++++|.+.|++..+.. +.. ..+..+....+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~--~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKV--LGKDHPDVAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHH--HCTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHh--cCCCChHHHHH
Confidence 1 1123344555555555555555555555443310 000 00112223444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 229 AVLIIHGFCKGKRVEEAFKVLDELRIR------ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 229 ~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
+..+...+...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.++++.+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666667777777666665442 1122 223455566666666777766666666544
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=4.9e-11 Score=117.44 Aligned_cols=214 Identities=10% Similarity=-0.050 Sum_probs=174.4
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCCh-HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNT-QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 177 (556)
.++++.+.++...... +.+...+..+...+...|++ ++|++.|++..+..+. +..+|..+..+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666543 45788899999999999999 9999999999887543 6889999999999999999999999
Q ss_pred HHHHhCCCccChhhHHHHHHHHHhh---------CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc--------C
Q 008727 178 DEMSHRGVEFSTIGFGVFIWKFCEN---------AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG--------K 240 (556)
Q Consensus 178 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~ 240 (556)
++..+.. |+...+..+...+... |++++|++.|++..+. .|.+...|..+...|... |
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998865 5668888888889898 9999999999999887 677788888899999888 8
Q ss_pred CHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008727 241 RVEEAFKVLDELRIRECK--PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (556)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (556)
++++|.+.|++..+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875210 27788999999999999999999999998876422 344566677777777887777765
Q ss_pred HH
Q 008727 319 GE 320 (556)
Q Consensus 319 ~~ 320 (556)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=7.7e-11 Score=116.04 Aligned_cols=212 Identities=8% Similarity=-0.035 Sum_probs=179.7
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQI-NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 143 (556)
..++..+....... +.+...|..+...+...|++ ++|.+.|++..+.. +.+...+..+...|...|++++|.+.|+
T Consensus 85 ~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666543332 35788888999999999999 99999999999876 5578899999999999999999999999
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh--------CcHH
Q 008727 144 EVKFNCEDIGPEICNSLLAVLASD---------GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN--------AKLG 206 (556)
Q Consensus 144 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 206 (556)
+..+.. |+..++..+...+... |++++|++.|++..+... -+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 5678999999999999 999999999999988653 3567888889999988 9999
Q ss_pred HHHHHHHHHHhccCCCC---CchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008727 207 QVLSMLDEVRKRENSMI---NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVV 283 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 283 (556)
+|++.|++.... .| .+...|..+...|...|++++|.+.|++..+... -+...+..+...+...|++++|++.
T Consensus 239 ~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 45 6788899999999999999999999999887632 2566788888888899999988876
Q ss_pred HHH
Q 008727 284 LKK 286 (556)
Q Consensus 284 ~~~ 286 (556)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.5e-10 Score=98.13 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
..+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34556667788889999999999888776543 677888888999999999999999999887643 3677888888999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (556)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988764 5677888889999999999999999999988764 335778888889999999999999
Q ss_pred HHHHHhhhCCC
Q 008727 526 EVFNKSVNHDV 536 (556)
Q Consensus 526 ~~~~~m~~~~~ 536 (556)
+.++++.+.++
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 99998876543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=3e-09 Score=101.51 Aligned_cols=295 Identities=12% Similarity=0.021 Sum_probs=146.8
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCh----hhHHHHHH
Q 008727 234 HGFCKGKRVEEAFKVLDELRIRECKPDFI----AYRIVAEEFKLMGSVFEREVVLKKKRKLGVA-PRT----NDYREFIL 304 (556)
Q Consensus 234 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ll~ 304 (556)
..+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. ..+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666654432111211 3344445555666666666666655442110 111 12334445
Q ss_pred HHHhcCCHHHHHHHHHHHHcC----CCC--CCH-HHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 008727 305 GLIVERRICEAKELGEVIVSG----KFT--IDD-DVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVP----TLSTLSNLS 372 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~-~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll 372 (556)
.+...|++++|...++...+. +.. +.. ..+..+- ..+..|++++|...+++........ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777766655432 111 111 1222222 2244567777777776665443221 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcc-HhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHH
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTD-MESYN-----VMVSFLCTSGRLREAYGVIQEMKRKGLDPD---VSFYNSLME 443 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 443 (556)
..+...|++++|...++........++ ...+. ..+..+...|+.++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 666667777777777766554211111 11111 122335566777777777666554322111 123455556
Q ss_pred HHhhcCChhhHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 008727 444 ACCREDLLRPAKKLWDQMFAS----GCSGNL-KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 518 (556)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++.....- . ...+..+...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~~~~~~ 335 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFISHFVIE 335 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHHHHHHc
Confidence 666667777777766665432 211122 2445555666666777777777776665410 0 1112233344
Q ss_pred CCHHHHHHHHHHhhhCCC
Q 008727 519 TNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 519 g~~~~a~~~~~~m~~~~~ 536 (556)
| +....+++++....+
T Consensus 336 g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 336 G--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp H--HHHHHHHHHHHHTTC
T ss_pred c--HHHHHHHHHHHhCCC
Confidence 4 556666666655554
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=3.3e-09 Score=101.20 Aligned_cols=295 Identities=11% Similarity=0.014 Sum_probs=161.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhhCcHHHHHHHHHHHHhcc---CCCCCchhhHHHHHHH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFST----IGFGVFIWKFCENAKLGQVLSMLDEVRKRE---NSMINGSVIAVLIIHG 235 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~ 235 (556)
.+...|++++|...+++........+. .++..+...+...|++++|.+.+++..... +.......++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344445555555555554443211111 123333344445555555555555544320 0000011223445566
Q ss_pred HhccCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHH
Q 008727 236 FCKGKRVEEAFKVLDELRIR----ECK--P-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR----TNDYREFIL 304 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~ 304 (556)
+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++......... ...+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66777777777777665432 111 2 123445566666777777777777776655322111 112333333
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHhc
Q 008727 305 GLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP--TLSTLS----NLSKNLCKR 378 (556)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~~ 378 (556)
.+...| ++++|...+++.......+ ...... ..+..+...
T Consensus 183 ~~~~~g----------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 183 CSLARG----------------------------------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp HHHHHT----------------------------------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcC----------------------------------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 444444 4445555554443321111 122221 233447799
Q ss_pred CChHHHHHHHHHHHhCCCCc---cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhhcCC
Q 008727 379 NKSDELVEVYKVLSANDYFT---DMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDPDV-SFYNSLMEACCREDL 450 (556)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~ 450 (556)
|++++|...++........+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999999887644321 1225677788899999999999999987653 222222 366777888899999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.++|...+++..... +. ...+..+...| +....+++.+...
T Consensus 309 ~~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 309 KSDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 999999999998752 11 11223344444 5666677777655
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=5.7e-10 Score=94.49 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 165 (556)
.|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34444555555666666666666555443 334555555555555566666666666555544221 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHH
Q 008727 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (556)
Q Consensus 166 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 245 (556)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+... .|.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 123333444444444444444444444444433 222333344444444444444444
Q ss_pred HHHHHHH
Q 008727 246 FKVLDEL 252 (556)
Q Consensus 246 ~~~~~~m 252 (556)
.+.++..
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3e-10 Score=116.40 Aligned_cols=165 Identities=17% Similarity=0.113 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...++.+...+.+.|++++|++.|++..+..+. +...|+.+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 567788888899999999999999998886654 6778889999999999999999999998887543 57788999999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 524 (556)
|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++.++.... +...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999988864 445788899999999999999999999998876322 467788888899999999999
Q ss_pred HHHHHHhhh
Q 008727 525 FEVFNKSVN 533 (556)
Q Consensus 525 ~~~~~~m~~ 533 (556)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=4.2e-09 Score=100.70 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=132.9
Q ss_pred hcCChhHHHHHHHHHHHcC----C-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-ccHhhHHHHHHHH
Q 008727 342 SSIDPRSAIVFFNFMIEKG----R-VP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFL 410 (556)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~----~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 410 (556)
..|+++.|+..+.+..+.. . .+ ...++..+...|...|++++|.+.+++..+. +.. ....++..+...|
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455566655555544321 1 11 2446677788889999999999998886652 211 1234678888899
Q ss_pred HhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKR-----KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG----CSGNLKTYNILISKFS 481 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~ 481 (556)
...|++++|.+.+++..+ .... ...++..+...|.+.|++++|...+++..+.. -+.....+..+...|.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998876 4322 36778889999999999999999999988642 1222445666777777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 482 EVGE---IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 482 ~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..|+ ..+|+..+++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 312 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888 77777777662 33222 34566788889999999999999998765
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=4.3e-09 Score=100.61 Aligned_cols=165 Identities=9% Similarity=-0.114 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCc-c----ChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCC----CCchhhH
Q 008727 159 SLLAVLASDGYIDNALKMFDEMSHRGVE-F----STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM----INGSVIA 229 (556)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ 229 (556)
.....+...|++++|...|++..+.-.. + ...++..+...|...|+++.|...+++........ +....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444556677777777777776653111 1 23455666666777777777777777665431111 1123455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChhhHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL----GVAPRTNDYR 300 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 300 (556)
+.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|++.+++..+. +......++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 66777777777777777777765542 1111 1235566666777777777777777766551 1111133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008727 301 EFILGLIVERRICEAKELGEVIV 323 (556)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~ 323 (556)
.+...+.+.|++++|...++...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666655544
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=4.5e-10 Score=115.10 Aligned_cols=166 Identities=8% Similarity=-0.060 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...|+.+..++.+.|++++|++.|++.++.. +-+...+..+...|.+.|++++|++.|++..+..+. +..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999875 557889999999999999999999999999887544 7889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
++.+.|++++|++.|++..+.+. -+...|..+...+...|++++|++.|++..+. .|.+...+..+...+...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999988642 25678888999999999999999999999987 677788899999999999999
Q ss_pred HHHHHHHHHHhh
Q 008727 243 EEAFKVLDELRI 254 (556)
Q Consensus 243 ~~A~~~~~~m~~ 254 (556)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=1.6e-09 Score=95.37 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHh
Q 008727 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (556)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (556)
.++.....+..|++++|+..|++..+....++...+..+..++...|++++|.+.++...+..+. +...|..+...|..
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence 34444555678899999999999888776567777777888888999999999999998887655 66788888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 008727 413 SGRLREAYGVIQEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSE 482 (556)
Q Consensus 413 ~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 482 (556)
.|++++|+..+++..+.... +. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..+|..
T Consensus 89 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHH
Confidence 99999999999988876432 34 45777888888889999999999998875 444 5677777777765
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 483 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
.| ..+++++...+. .+...|.... ....+.+++|...+++..+.++.
T Consensus 166 ~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 166 NG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 44 344555554432 2344444333 33456789999999999887754
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.1e-10 Score=103.49 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=97.9
Q ss_pred cCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCccHhhHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEK------GRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN------D-YFTDMESYNVMVS 408 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~ 408 (556)
.|++++|+..+++..+. +..| ...++..+...|...|++++|.+.+++..+. . .+.....+..+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46666666666665543 1111 2345555566666666666666666665442 1 0112345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCC-HHHH
Q 008727 409 FLCTSGRLREAYGVIQEMKRK------GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS-------GCSGN-LKTY 473 (556)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~ 473 (556)
.|...|++++|...+++..+. +..| ...++..+...|...|++++|.+.++++.+. ...+. ...|
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 666666666666666665543 1111 2345556666666666666666666665542 01111 1222
Q ss_pred HHHHHHHHccCCHHHH------HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 474 NILISKFSEVGEIEGA------LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A------~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
..+...+...+....+ ...++.... .......++..+...|.+.|++++|..++++.++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222222222221111 111111100 11112446778889999999999999999988764
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=4.1e-09 Score=92.74 Aligned_cols=196 Identities=9% Similarity=-0.113 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 161 (556)
.|+..|......+...|++++|...|+...+...+++...+..+...+...|++++|++.|++..+..+. +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888889999999999999999888763367778878888999999999999999999887544 677899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCccCh-------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC--chhhHHHH
Q 008727 162 AVLASDGYIDNALKMFDEMSHRGVEFST-------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLI 232 (556)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 232 (556)
.++...|++++|.+.|++..+.... +. ..|..+...+...|++++|++.|+...+. .|. ....+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 9999999999999999998875421 23 34666777788889999999999998866 566 56777777
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 233 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
...|...| ...++++...+ ..+...|..... ...+.+++|+..+++..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 77775443 34455554442 223444444332 3346688999999988875
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=1.7e-08 Score=90.66 Aligned_cols=181 Identities=13% Similarity=0.022 Sum_probs=123.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
|+..|+++.+.+ .++..++..+..++...|++++|++++......+. .-+...+..+++.+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 44555556777788888888888888888766554 1256677888888888888888888888887
Q ss_pred HCCCCC-----CHhHHHHHHHHH--hhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 428 RKGLDP-----DVSFYNSLMEAC--CRED--LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 428 ~~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 245555555553 3334 788888888888664 45533444455578888889888888886654
Q ss_pred CC---------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 499 KG---------VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 499 ~g---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.- -+-|..++..+|......|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 20 02255566455555556676 78888888877664
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=9.7e-10 Score=100.18 Aligned_cols=135 Identities=6% Similarity=-0.065 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhC------C-CCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC------C
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVN------K-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN------C 149 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 149 (556)
....+..+...+...|++++|...++++.+. + .+....++..+...|...|++++|.+.|++.... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777788888888888888888887654 1 1234567777888888888888888888887653 1
Q ss_pred -CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCcc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 008727 150 -EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR------GVEF-STIGFGVFIWKFCENAKLGQVLSMLDEVRK 217 (556)
Q Consensus 150 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 217 (556)
.+....++..+...+...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.+++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223457777888888888888888888877654 1112 345566677777777777777777777764
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5.6e-09 Score=82.97 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3555666666677777777777776655332 45566666667777777777777777776653 345566667777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777776553 2245566667777777777777777777776544
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.9e-08 Score=79.83 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 446 (556)
.+..+...+...|++++|..+++.+.+.... +...+..+...+...|++++|...++++...+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 3556677788899999999999988776543 6678888888999999999999999998886533 5778888899999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998864 456778888999999999999999999998865
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=1.8e-08 Score=92.27 Aligned_cols=169 Identities=11% Similarity=0.040 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-cHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTS-GRLREAYGVIQEMKRKGLDP-D---- 434 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~---- 434 (556)
.++..+..+|.+.|++++|...+++..+. |-.. ...+++.+...|... |++++|+..+++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45566666777777777777777766542 1110 134677888888886 99999999999877642110 1
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL------KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT-- 506 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 506 (556)
..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 356888889999999999999999999875322211 15677788889999999999999998743 33321
Q ss_pred ----hHHHHHHHHH--ccCCHHHHHHHHHHhhhCCC
Q 008727 507 ----TYTSLLEGLC--QETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 507 ----~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+..++.+|. ..+++++|+..|+++.+.++
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 2444556664 46779999999988766543
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=5.1e-07 Score=88.72 Aligned_cols=377 Identities=8% Similarity=-0.032 Sum_probs=211.0
Q ss_pred cC-ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HhHHH
Q 008727 97 SR-QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-IDNAL 174 (556)
Q Consensus 97 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 174 (556)
.| +++.|+.+|+.+...- |. |+++.+..+|+..... .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 3677777777766542 22 8999999999999875 4688999999988888774 46677
Q ss_pred HHHHHHHhC-CCcc-ChhhHHHHHHHHH----hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHH
Q 008727 175 KMFDEMSHR-GVEF-STIGFGVFIWKFC----ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKV 248 (556)
Q Consensus 175 ~~~~~m~~~-~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 248 (556)
.+|+..... |..| +...|...+..+. ..++.+.+.++|+..... +. ......|..... +.+......+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHH-HHHHhccccHHHH
Confidence 888876653 4333 5566666665443 346788888999888864 21 111222322211 1111112222222
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--C-----CHHHHHHHHHH
Q 008727 249 LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE--R-----RICEAKELGEV 321 (556)
Q Consensus 249 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~ 321 (556)
+.+.. +.+..|..+++.+...-...+...|...+.--... + ..+.+..+|+.
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22211 11222333333222110000112232222221111 0 02345567777
Q ss_pred HHcCCCCCCHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------
Q 008727 322 IVSGKFTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN------ 394 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 394 (556)
++...+ ..+..|-..... ...|+.+.|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 205 al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 666433 335555544444 3357788888888888776 33322211 12222221211 2222110
Q ss_pred ------CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh-cCChhhHHHHHHHHHHcCCC
Q 008727 395 ------DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR-EDLLRPAKKLWDQMFASGCS 467 (556)
Q Consensus 395 ------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~ 467 (556)
........|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.- +
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence 00112246777777777788899999999998 32 12234444322222222 336999999999998763 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
-++..|...++...+.|+.+.|..+|+++. .....|...+.-=...|+.+.+..+++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566777887788999999999999972 2466777777766778999999999988763
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=2.1e-08 Score=86.59 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=103.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCccHhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008727 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNV----------------MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY 438 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 438 (556)
+...|++++|...|+...+..+. +...|.. +..+|.+.|++++|+..|++..+.... +...+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 44555555555555555443322 2333444 777888888888888888888877543 67788
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE--IEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
..+..++...|++++|...|++..+.. +.+...|..+..+|...|+ .+.+...++... ...|....+.....++.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 888888888888888888888888764 4457778888777766553 344555555543 22233333444555666
Q ss_pred ccCCHHHHHHHHHHhhhCCCc
Q 008727 517 QETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 517 ~~g~~~~a~~~~~~m~~~~~~ 537 (556)
..|++++|+..|++.++..+.
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCC
T ss_pred HccCHHHHHHHHHHHHHhCCC
Confidence 778888888888888877654
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=2e-08 Score=90.33 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CChHh
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD---SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED--IGPEI 156 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 156 (556)
.++..+......+.+.|++++|...|+.+.+.. +.+ ...+..+...|.+.|++++|+..|+...+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666667777778888888888888887754 223 567777778888888888888888888765331 12456
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCC
Q 008727 157 CNSLLAVLAS--------DGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 157 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~ 184 (556)
+..+..++.. .|++++|...|++..+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6777777777 788888888888877653
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=5.8e-08 Score=87.35 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=36.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHcc----------CCHHHHHHHHHHhhhCCC
Q 008727 474 NILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQE----------TNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~ 536 (556)
..+...|.+.|++++|...|+++++..... ....+..+..+|... |++++|...++++++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344566666777777777777766542110 123455555555544 666777777777666554
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.3e-07 Score=81.95 Aligned_cols=186 Identities=11% Similarity=-0.019 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC----CHHHHHHH
Q 008727 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG----RLREAYGV 422 (556)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 422 (556)
.+|+..|++..+.| +...+..+...|...+++++|.+.|++..+.+ +...+..+...|.. + +.++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35667777777764 66777788888888999999999999998875 66778888888877 6 89999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHH
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSE----VGEIEGALRLF 493 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 493 (556)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .++..+..|...|.. .+++++|.+.|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 67788888888887 88999999999999986521 127788889999988 88999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcc-C-----CHHHHHHHHHHhhhCCCcccHHHHH
Q 008727 494 HNMLEKGVAPDATTYTSLLEGLCQE-T-----NLQAAFEVFNKSVNHDVMLARSILS 544 (556)
Q Consensus 494 ~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~~~~~~~~~ 544 (556)
++..+.+ .+...+..|...|... | ++++|..+|++..+.|.......+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998872 2445666777777543 3 8999999999999988765554444
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=2.6e-07 Score=82.99 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=117.5
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIP 127 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 127 (556)
+|..+..|-+.+-.|+...++.=.. +-....++ ..-.-+.+++...|++... ..-.|....+..+..
T Consensus 13 ~~~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 13 DPMDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ 79 (310)
T ss_dssp --CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhHHHHHHHHHH---hcCccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH
Confidence 5555667777777777877776222 21221222 2223345777777776631 111233333333333
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhhCcHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFSTIGFGVFIWKFCENAKLG 206 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~ 206 (556)
.+ ..+ |+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+
T Consensus 80 ~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 80 FL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp HH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred Hh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 32 222 666676665544 33455556777777777777777777777655543 124455666667777777777
Q ss_pred HHHHHHHHHHhccCCCCC----chhhHHHHHHH----HhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 207 QVLSMLDEVRKRENSMIN----GSVIAVLIIHG----FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~----~~~~~~~li~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
.|.+.++.|.+. .++ +..+...|+.+ ....+++.+|..+|+++.+. .|+..+-..++.++.+.|+++
T Consensus 154 ~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 154 TASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp HHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 777777777654 221 12222223333 22233677777777776554 344333334444666667777
Q ss_pred HHHHHHHHHHh
Q 008727 279 EREVVLKKKRK 289 (556)
Q Consensus 279 ~a~~~~~~~~~ 289 (556)
+|.+.++.+.+
T Consensus 229 eAe~~L~~l~~ 239 (310)
T 3mv2_B 229 EAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 77666665443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2e-08 Score=103.54 Aligned_cols=185 Identities=10% Similarity=-0.006 Sum_probs=147.9
Q ss_pred HHhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMI--------EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLC 411 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (556)
++..+++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|+++.+.++. +...|..+..+|.
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 366789999999999887 322 335667788888999999999999999999886554 7778999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
..|++++|++.|++..+.... +...|..+..++.+.|++++ .+.|+++.+.+ +.+...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987543 57788899999999999999 99999999865 5567889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHccCC--------HHHHHHHHHHh
Q 008727 492 LFHNMLEKGVAPD-ATTYTSLLEGLCQETN--------LQAAFEVFNKS 531 (556)
Q Consensus 492 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~--------~~~a~~~~~~m 531 (556)
.|+++.+. .|+ ...+..+..++...|+ +++|.+.++.+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99998854 454 4566667777766444 55666665554
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=2.6e-08 Score=90.88 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=128.2
Q ss_pred CCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHH-H
Q 008727 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFG-V 194 (556)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ 194 (556)
+.+...+..+...+.+.|++++|...|++.....+. +...+..+...+.+.|++++|...|++..... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 455667778888888999999999999998876544 77888999999999999999999999887653 3433222 2
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh
Q 008727 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEFKL 273 (556)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~ 273 (556)
....+...++.+.|+..+++.... .|++...+..+...+...|++++|.+.|.++.+.... .+...+..+...+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 222356677788888888888876 6777888888888999999999999999888876322 125678888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 008727 274 MGSVFEREVVLKKKR 288 (556)
Q Consensus 274 ~~~~~~a~~~~~~~~ 288 (556)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 888888888777654
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.6e-07 Score=82.24 Aligned_cols=68 Identities=7% Similarity=-0.086 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-C-CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-L-DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCE 150 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 150 (556)
++..+..+...+.+.|++++|...|+.+.+.... + ....+..+..++.+.|++++|+..|+.+.+..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 72 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 3455556667777788888888888887764311 1 135666777778888888888888888776543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.4e-08 Score=102.88 Aligned_cols=173 Identities=12% Similarity=-0.065 Sum_probs=130.5
Q ss_pred HhcCChhHHHHHHHHhH--------hCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh
Q 008727 95 SLSRQINAIDSVLKQVK--------VNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (556)
Q Consensus 95 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 166 (556)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|+++.+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888888888888887 432 456677888888888888888888888888776444 77788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 246 (556)
.|++++|.+.|++..+.+. -+...+..+...+...|++++ ++.|++..+. .|.+...+..+...+.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888877642 245677777888888888888 8888888876 5666778888888888888888888
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 008727 247 KVLDELRIRECKPD-FIAYRIVAEEFKLMGS 276 (556)
Q Consensus 247 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 276 (556)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888887765 344 4456566666555444
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=4.5e-08 Score=99.07 Aligned_cols=154 Identities=9% Similarity=-0.057 Sum_probs=103.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 422 (556)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356778888888776653 224667777777888888888888888888776544 566788888888888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV---GEIEGALRLFHNMLEK 499 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 499 (556)
+++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776433 56777888888888888888888888887764 44567777788888888 8888888888888766
Q ss_pred C
Q 008727 500 G 500 (556)
Q Consensus 500 g 500 (556)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=7e-08 Score=88.34 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcc-HhhHHHHHHHHHhcCCHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFTD-MESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 420 (556)
+++|...|.+. ...|...|++++|...|++..+. +-.++ ..+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66777777665 34577889999999999887652 22222 458899999999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhHHHHHHHHHhhc-CChhhHHHHHHHHHHcC--C-CC-C-HHHHHHHHHHHHccCCHHHH
Q 008727 421 GVIQEMKRKGLD-PD----VSFYNSLMEACCRE-DLLRPAKKLWDQMFASG--C-SG-N-LKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 421 ~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~--~-~~-~-~~~~~~li~~~~~~g~~~~A 489 (556)
..+++..+.... .+ ..+++.+...|... |++++|+..|++..+.. . .+ . ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999987753211 01 35788999999996 99999999999988641 0 11 1 45688899999999999999
Q ss_pred HHHHHHHHHCCCCCCHh------hHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 490 LRLFHNMLEKGVAPDAT------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+..|++..+........ .|..+..++...|++++|...+++..+.++.
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999864332221 4677778899999999999999999876654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.5e-08 Score=84.89 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH-HH
Q 008727 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK-FC 200 (556)
Q Consensus 122 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~ 200 (556)
+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|...|+...+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344455556666666666666665543222 55566666666666666666666666655432 222222111111 11
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFE 279 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 279 (556)
..++...|+..++..... .|.+...+..+...+...|++++|.+.|++..+....+ +...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 212223356666666655 55556666677777777777777777777776653322 24466667777777777777
Q ss_pred HHHHHHHHH
Q 008727 280 REVVLKKKR 288 (556)
Q Consensus 280 a~~~~~~~~ 288 (556)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.4e-08 Score=83.73 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-Hh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA-CC 446 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 446 (556)
+......+...|++++|...|+...+..+. +...+..+...+...|++++|+..+++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555678889999999999887765443 66788888899999999999999999877653 344333322212 22
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 525 (556)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 3334445788888888763 4457888899999999999999999999998764322 2457888889999999999999
Q ss_pred HHHHHhhh
Q 008727 526 EVFNKSVN 533 (556)
Q Consensus 526 ~~~~~m~~ 533 (556)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=8.1e-08 Score=82.94 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHH----------------HHHHHHcCCChHHHHHHHHHHHhC
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF----------------IIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
..+......+...|++++|...|+...+.. |-+...+.. +...|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334444455566677777777777666643 223333433 334444444444444444444333
Q ss_pred CCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
.+. +..+|..+..++...|++++|.+.|++..+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 333444444444444444444444444433
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=2.7e-07 Score=80.71 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDF----IAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 292 (556)
.+...|.+.|++++|...|+.+.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3566677777777777777777665 2322 3566677777777888888777777766543
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=7.1e-08 Score=87.98 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-H
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS-L 441 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l 441 (556)
.+...+..+...+...|++++|...|+...+..+. +...+..+...+...|++++|...++++... .|+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34555666777788999999999999998887655 6778899999999999999999999988765 345443332 2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
...+...++.+.|.+.+++..+.. +.+...+..+...|...|++++|.+.|+++.+..... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 334667788888999999988874 5668889999999999999999999999998763221 25678889999999999
Q ss_pred HHHHHHHHHHhh
Q 008727 521 LQAAFEVFNKSV 532 (556)
Q Consensus 521 ~~~a~~~~~~m~ 532 (556)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999888754
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=4.6e-06 Score=81.90 Aligned_cols=98 Identities=7% Similarity=-0.026 Sum_probs=67.5
Q ss_pred CHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHhHhC-CC-CCCHHhHHH
Q 008727 48 SPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ-INAIDSVLKQVKVN-KI-TLDSSVYRF 124 (556)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ 124 (556)
...++.+.+..+..++.+.+..+|...... .|+...|...+.-..+.++ .+.+..+|+..... |. +.+...|..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 455666777777667788888888887654 3688888888887777663 45567778877663 32 346677777
Q ss_pred HHHHHHc----CCChHHHHHHHHHHHhC
Q 008727 125 IIPSLIQ----GKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 125 li~~~~~----~~~~~~a~~~~~~~~~~ 148 (556)
.+..+.. .++.+.+.++|+.....
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 7766542 35678888899888774
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.4e-08 Score=82.44 Aligned_cols=139 Identities=8% Similarity=-0.063 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
...|++++|+..++......+. +...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|...|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 3445555665555555443221 2334455556666666666666666666655332 4556666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHHCCCCC-CHhhHHHHHHHHHccC
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL-FHNMLEKGVAP-DATTYTSLLEGLCQET 519 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g 519 (556)
..|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+. .| +...|......+...|
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 6666666542 23455566666666666665554443 3555543 22 3334444434444444
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.7e-08 Score=82.03 Aligned_cols=142 Identities=8% Similarity=-0.058 Sum_probs=81.4
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhH
Q 008727 93 SLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDN 172 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (556)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3444566666666666655432 223344555666666777777777777766665433 56666667777777777777
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHH-HHHHHhccCCCCCchhhHHHHHHHHhccC
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSM-LDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 240 (556)
|+..|++..+.+. -+..++..+...+.+.|++++|.+. ++...+. .|.+..+|......+...|
T Consensus 84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 7777766665432 1345555566666666666554443 3555544 4555555555444444444
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=3.2e-07 Score=79.36 Aligned_cols=142 Identities=6% Similarity=-0.018 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC----ChHHHHH
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK----NTQKAFS 140 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~ 140 (556)
++|++.|..+... -++..+..+...+...+++++|.+.|+...+.| +...+..|...|.. + +.++|.+
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3455666665443 255666666666666666666666666666654 45555555555555 4 6666666
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCc-cChhhHHHHHHHHHh----hCcHHHHHHH
Q 008727 141 VFNEVKFNCEDIGPEICNSLLAVLAS----DGYIDNALKMFDEMSHRGVE-FSTIGFGVFIWKFCE----NAKLGQVLSM 211 (556)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 211 (556)
.|++..+.| ++.++..|...|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|.+.
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666665543 45555666666555 55666666666666554421 013333334444443 3344444444
Q ss_pred HHHHHh
Q 008727 212 LDEVRK 217 (556)
Q Consensus 212 ~~~~~~ 217 (556)
|+....
T Consensus 152 ~~~A~~ 157 (212)
T 3rjv_A 152 FKGSSS 157 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=3.2e-07 Score=79.50 Aligned_cols=126 Identities=9% Similarity=-0.037 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 447 (556)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|+..+++..+.... +...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444556667777777777776653 346667777777777777777777777777665422 55667777777777
Q ss_pred cCChhhHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 448 EDLLRPAKKLWDQMFASGCSGNL----------------KTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|++++|.+.|++..+.. +.+. ..+..+..+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777776642 2222 55666677777777777777777777644
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=3.8e-06 Score=76.20 Aligned_cols=215 Identities=8% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCChHhHHHHHHHH----Hhc---CCHhH
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK--NTQKAFSVFNEVKFNCEDIGPEICNSLLAVL----ASD---GYIDN 172 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 172 (556)
+|.+.++.++..+ |-+..+|+.--..+...| +++++++.++.+....++ +..+|+.--..+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444433 223333444444444444 444444444444443322 333444333333 222 34444
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH--HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC------HHH
Q 008727 173 ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG--QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR------VEE 244 (556)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~ 244 (556)
++++++.+.+.+. -+-.+|+.-...+...|+++ ++++.++.+.+. .+.+..+|+.-...+.+.+. +++
T Consensus 129 EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 4444444444321 13334444443444444444 444444444443 33334444333333333333 444
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008727 245 AFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFE-REVVLKKKRKLG--VAPRTNDYREFILGLIVERRICEAKELGEV 321 (556)
Q Consensus 245 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (556)
+++.++.+...... |...|+.+-..+.+.|+... +.++..++...+ -..+...+..+...+.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 55555444443221 44444444444444443222 223333332211 011233344444444455555555555555
Q ss_pred HH
Q 008727 322 IV 323 (556)
Q Consensus 322 ~~ 323 (556)
+.
T Consensus 284 l~ 285 (306)
T 3dra_A 284 LK 285 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=3.9e-07 Score=84.04 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=37.0
Q ss_pred hCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008727 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (556)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 281 (556)
.|++++|.+++++..+... .. .+...+++++|...|... ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~---~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK---TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc---cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 5677778888877765411 10 011146777777777654 23456677777777
Q ss_pred HHHHHHHh
Q 008727 282 VVLKKKRK 289 (556)
Q Consensus 282 ~~~~~~~~ 289 (556)
+.|.+..+
T Consensus 57 ~~~~~al~ 64 (307)
T 2ifu_A 57 DAYLQEAE 64 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1.6e-07 Score=86.70 Aligned_cols=225 Identities=10% Similarity=-0.018 Sum_probs=146.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHH
Q 008727 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIV-ERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351 (556)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 351 (556)
..|++++|.+++++..+.... .+.+ .++++.|...|..+. ......+++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a~--------------~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKAA--------------VAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHHH--------------HHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHH
Confidence 356778888888877654211 1233 577888877776542 12234678888888
Q ss_pred HHHHHHHcCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-cHhhHHHHHHHHHhcCCHHHHHH
Q 008727 352 FFNFMIEKGR----VP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYG 421 (556)
Q Consensus 352 ~~~~~~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~ 421 (556)
.|.+..+... .+ -..++..+...|.+.|++++|...|++..+. |-.. ...+++.+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877654321 11 1346777778888889999999988886542 2111 13467777788877 99999999
Q ss_pred HHHHHHHCCCCC-C----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 008727 422 VIQEMKRKGLDP-D----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 422 ~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.+++..+..... + ..++..+...|...|++++|++.|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988876532111 1 456788888888999999999999888763 11111 2356666777778899999999
Q ss_pred HHHHHHHCCCCCCH------hhHHHHHHHHHccCCHHHHHHH
Q 008727 492 LFHNMLEKGVAPDA------TTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 492 ~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
.|++.. . .|+. .....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 998887 4 2321 1234445544 56777666663
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=4e-06 Score=76.61 Aligned_cols=163 Identities=11% Similarity=0.076 Sum_probs=123.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CccHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHH
Q 008727 371 LSKNLCKRNKSDELVEVYKVLSANDY-FTDME----SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNS 440 (556)
Q Consensus 371 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 440 (556)
.+..+...|++++|..+++...+... .|+.. .+..+...+...+++++|+..+++..+.... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45678889999999999999887432 22321 3345666677778999999999999884322 22 236899
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHH
Q 008727 441 LMEACCREDLLRPAKKLWDQMFAS-----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD-ATTYT 509 (556)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 509 (556)
+..+|...|++++|...++++.+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998842 11222 347888999999999999999999988753 22222 56788
Q ss_pred HHHHHHHccCC-HHHHHHHHHHhhh
Q 008727 510 SLLEGLCQETN-LQAAFEVFNKSVN 533 (556)
Q Consensus 510 ~l~~~~~~~g~-~~~a~~~~~~m~~ 533 (556)
.+..+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999988753
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=2.8e-06 Score=77.08 Aligned_cols=152 Identities=7% Similarity=0.039 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC------
Q 008727 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR--EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL------ 450 (556)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------ 450 (556)
++++++.++++.+.+..++ +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 5566666666666665544 5556666555556666665 666666766666544 55666655555555554
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG-ALRLFHNMLEKG--VAPDATTYTSLLEGLCQETNLQAAFEV 527 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (556)
++++++.+++++... +-|...|+-+-..+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 666666666666654 4556666666666666665333 334444444322 122455566666666667777777777
Q ss_pred HHHhhh
Q 008727 528 FNKSVN 533 (556)
Q Consensus 528 ~~~m~~ 533 (556)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2e-07 Score=94.21 Aligned_cols=152 Identities=7% Similarity=-0.070 Sum_probs=111.5
Q ss_pred cChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHH
Q 008727 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSV 141 (556)
Q Consensus 62 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 141 (556)
++.+.|+..|+.+.... +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888888775443 2357788888888889999999999999988875 55678888888999999999999999
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh---CcHHHHHHHHHHHHhc
Q 008727 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN---AKLGQVLSMLDEVRKR 218 (556)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 218 (556)
|++..+.... +...+..+..++.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876543 678888899999999999999999998887642 2456777788888888 8999999999988877
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=2.1e-06 Score=74.24 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhc
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (556)
++.....+..|++++|+..|++.. .|+...+..+...+...|++++|...++...+.... +...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHc
Confidence 333344455666677776666552 445666666666666777777777777666654432 455666666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCC---------------CHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 414 GRLREAYGVIQEMKRKGLDP---------------DVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
|++++|.+.|++..+..... ....+..+..+|...|++++|.+.|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777776666643221 1145666666666677777777777666654
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.4e-06 Score=71.71 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|...+++..+.... +..++..+..++...|++++|.+.+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566666667777777777777777665332 56667777777777777777777777777653 445667777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHH--HHHHHccCCHHHHHHHHHHh
Q 008727 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSL--LEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~m 531 (556)
..|++++|.+.|+++.+.... +...+..+ ...+.+.|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 778888888777777765221 33344323 33356677777777777764
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=4.1e-05 Score=70.22 Aligned_cols=225 Identities=9% Similarity=-0.012 Sum_probs=150.5
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-C-CH
Q 008727 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK-NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD-G-YI 170 (556)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 170 (556)
..+.+..++|.++++.++..+ +-+..+|+.--..+...| .++++++.++.+....++ +..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 334455567888888888876 456667777667777777 589999999999887655 778888888777776 6 78
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHH--------HHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCC-
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG--------QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR- 241 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 241 (556)
++++++++.+.+.+. -+..+|+.-...+.+.|.++ ++++.++.+.+. .+.+..+|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcccc
Confidence 889999999887653 36667776666666666666 888888888876 67777888777777777665
Q ss_pred ------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC----
Q 008727 242 ------VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV--------------------FEREVVLKKKRKLG---- 291 (556)
Q Consensus 242 ------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 291 (556)
++++++.+++....... |...|+.+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887765332 667777666666555543 12222222222111
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 008727 292 -VAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (556)
Q Consensus 292 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (556)
-.+.......+...|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0234445556666677777777777777766543
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=1.4e-06 Score=68.08 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++.++... .+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 4444444555555555555555554432 33444455555555555555555555555544321 134444445555555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 008727 518 ETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~ 535 (556)
.|++++|++.|++.++.+
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 555555555555555444
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=2.5e-06 Score=70.28 Aligned_cols=130 Identities=9% Similarity=-0.013 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
..+..+...+...|+++.|...|+...+.... +...+..+...+...|++++|...+++..+.... +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34556667788899999999999988876543 6778888999999999999999999998887433 677888899999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHH
Q 008727 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNI--LISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
...|++++|.+.++++.+.. +.+...+.. +...+...|++++|.+.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998864 334555533 44447788999999999887653
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=6.3e-07 Score=76.81 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=90.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhhcCCh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSLMEACCREDLL 451 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~ 451 (556)
..|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444433 22224456666666777777777777777665541 1111 234566666777777777
Q ss_pred hhHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCC
Q 008727 452 RPAKKLWDQMFAS----GCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETN 520 (556)
Q Consensus 452 ~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 520 (556)
++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++..+. +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766543 1011 1344666677777777777777777776542 1100 12234566667777788
Q ss_pred HHHHHHHHHHhhh
Q 008727 521 LQAAFEVFNKSVN 533 (556)
Q Consensus 521 ~~~a~~~~~~m~~ 533 (556)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776644
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1.7e-06 Score=69.80 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
..+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|++.|++..+.... +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 345555556666666666666666666543 334556666666666666666666666666654221 345555566666
Q ss_pred HccCCHHHHHHHHHHhhhCCC
Q 008727 516 CQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~ 536 (556)
.+.|++++|...|++.++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 666666666666666655543
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=5.7e-06 Score=75.61 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--Hh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD-----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD---PD--VS 436 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 436 (556)
.+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677888999999998887776533211 123444556677888999999999988764221 12 45
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGN-----LKTYNILISKFSEVGEIEGALRLFHNMLEKG----VAP-DA 505 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~ 505 (556)
+|+.+...|...|++++|...++++.+. ...|+ ..+|..+..+|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998732 01122 2578889999999999999999999987531 111 15
Q ss_pred hhHHHHHHHHHccCCHHHH-HHHHHHhh
Q 008727 506 TTYTSLLEGLCQETNLQAA-FEVFNKSV 532 (556)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 532 (556)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888899999999999 77788764
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=2.6e-06 Score=66.08 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 444444455555555555555555444321 133444444455555555555555555544432 233444444455555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNMLE 498 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~ 498 (556)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555443
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=1.9e-06 Score=69.47 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=79.0
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|...|+++.+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 3446677777788888888888888888876443 67778888888888888888888888888764 445677888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 506 (556)
+|...|++++|.+.|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888765 35543
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=2.4e-06 Score=66.60 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+......|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 5666677777788888888888877776433 56777777788888888888888888877764 455677777888888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 008727 482 EVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~ 499 (556)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888887765
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=9.8e-07 Score=73.81 Aligned_cols=120 Identities=8% Similarity=0.148 Sum_probs=84.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhhcCCh--hh
Q 008727 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA-CCREDLL--RP 453 (556)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~--~~ 453 (556)
..|++++|...++...+..+. +...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777776665433 5667777778888888888888888877765432 56666677777 6677777 88
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...++++.+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887763 345667777778888888888888888888765
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=6.4e-07 Score=72.30 Aligned_cols=99 Identities=14% Similarity=-0.009 Sum_probs=73.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+...|++++|+..|++....... +...|..+..+|...|++++|...|+++.+.. +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4446666777777888888888888877776433 66677777778888888888888888877754 445667777778
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877754
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=6e-06 Score=73.14 Aligned_cols=189 Identities=10% Similarity=-0.058 Sum_probs=113.9
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHhHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCccCh--------------
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSL-------LAVLASDGYIDNALKMFDEMSHRGVEFST-------------- 189 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------- 189 (556)
..++...|.+.|.++....+. ....|+.+ ..++.+.++..++...+..-.+. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467888888888888776544 66677777 56666666666666655554441 1111
Q ss_pred --------hhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC-
Q 008727 190 --------IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD- 260 (556)
Q Consensus 190 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~- 260 (556)
.........+...|++++|.++|+.+... .|.+. ....+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 12223445566777777777777766644 33333 44455567777777888777776554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 008727 261 -FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR--TNDYREFILGLIVERRICEAKELGEVIVSGKF 327 (556)
Q Consensus 261 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 327 (556)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23455666677777777777777777664332243 12333444566677777777777777766544
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.4e-05 Score=72.93 Aligned_cols=91 Identities=10% Similarity=0.159 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCC-CCCH----HhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hHhHHHH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKI-TLDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED-IG----PEICNSL 160 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 160 (556)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666667777666666655321 1111 12223444455556666666666666553211 11 2246666
Q ss_pred HHHHHhcCCHhHHHHHHHHHH
Q 008727 161 LAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~ 181 (556)
..+|...|++++|...|++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666655
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=4.9e-06 Score=64.43 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 456667777888899999999999988775433 667888888899999999999999999887643 367788888899
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (556)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999988764 3445556555555543
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=1.7e-06 Score=78.52 Aligned_cols=194 Identities=9% Similarity=-0.046 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|.+.|++++|+..+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 55677788888889999999999999988865 457888888999999999999999999998876543 6788899999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCH
Q 008727 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (556)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 242 (556)
++...|++++|...|+...+.+.. +...+...+....+.. ++......... ..+.+..+...+.. + ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRWNSIEER---RIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHHHHHHHT---CCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHHHHHHHH---HHhhhHHHHHHHHH-H-HHHHH
Confidence 999999999999999887764311 1111112222222111 11111111111 13333444433322 2 25778
Q ss_pred HHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHh
Q 008727 243 EEAFKVLDELRIRECKPDFIAY-RIVAEEFKLM-GSVFEREVVLKKKRK 289 (556)
Q Consensus 243 ~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~-~~~~~a~~~~~~~~~ 289 (556)
++|.+.++...+. .|+.... ..+-..+.+. +.++++.++|.+..+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888776654 4544333 2333333333 556777777776654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.1e-06 Score=66.55 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 334455555555555555555555555544221 34455555555555555555555555555432 2334455555555
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 008727 480 FSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~ 498 (556)
|...|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=8e-07 Score=71.72 Aligned_cols=101 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
+...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|.+.|++..+... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 45567778889999999999999999999875 56788899999999999999999999999987642 25677888999
Q ss_pred HHHccCCHHHHHHHHHHhhhCCC
Q 008727 514 GLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
+|...|++++|...|++.++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999987654
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=3.6e-06 Score=65.90 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=65.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+...|++++|...+++....... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 334555555566666666666666665554321 44555556666666666666666666665542 3345555566666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 520 (556)
|...|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666654421 134444445555544443
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=2.3e-06 Score=73.27 Aligned_cols=120 Identities=8% Similarity=-0.069 Sum_probs=56.2
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHh----CCCC-CChHhHHHHHHHHHhcCCH
Q 008727 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF----NCED-IGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~ 170 (556)
..|++++|.++++.+.. .......++..+...+...|++++|...+++... .+.. ....+++.+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44556666653333322 1112344555555566666666666666655543 1111 1223555556666666666
Q ss_pred hHHHHHHHHHHhC----CCcc--ChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 171 DNALKMFDEMSHR----GVEF--STIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 171 ~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666554432 1011 12234444444555555555555555443
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.9e-06 Score=65.98 Aligned_cols=119 Identities=8% Similarity=-0.046 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008727 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (556)
Q Consensus 363 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 442 (556)
.+...+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34566777778888999999999999998876544 6778888888899999999999999998886433 677888888
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999999988753 334566666666666554
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=3.6e-06 Score=78.53 Aligned_cols=87 Identities=15% Similarity=-0.009 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
.+|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|+++++... -+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 344444445555555555555555554432 23344444455555555555555555555444311 1233444444444
Q ss_pred HccCCHHHH
Q 008727 516 CQETNLQAA 524 (556)
Q Consensus 516 ~~~g~~~~a 524 (556)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444544444
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.4e-06 Score=72.87 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=102.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--H
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEI--E 487 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 487 (556)
...|++++|...+++..+.... +...|..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999998876543 67889999999999999999999999999864 4567788888888 8899998 9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 488 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
+|...++++.+... -+...+..+...|...|++++|...++++.+.++..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999987632 256778888899999999999999999998877643
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=4.5e-06 Score=65.30 Aligned_cols=119 Identities=10% Similarity=-0.048 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+...|+++.|...++...+.... +...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 445566667788888899998888888775443 6677888888888899999999999888876432 56778888888
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (556)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 889999999999999888764 44667777777777776653
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2.7e-06 Score=75.30 Aligned_cols=132 Identities=7% Similarity=-0.132 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILISKF 480 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 480 (556)
+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3456677888899999999998887654 444455666667888999999999998655421 111 23677788889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCc
Q 008727 481 SEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...++.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999875433253 234556677788999999999999999887765
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=1.4e-05 Score=73.07 Aligned_cols=166 Identities=10% Similarity=0.003 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCc---cC--hhhH
Q 008727 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP-----EICNSLLAVLASDGYIDNALKMFDEMSHRGVE---FS--TIGF 192 (556)
Q Consensus 123 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~--~~~~ 192 (556)
...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|.+.|++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33445555566666666666555443221110 12333444455556666666666665442111 11 2345
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCC----chhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCC-CHHH
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMIN----GSVIAVLIIHGFCKGKRVEEAFKVLDELRIR----ECKP-DFIA 263 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~ 263 (556)
+.+...|...|++++|...|++........+. ...++..+...|.+.|++++|.+.+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55555666666666666666655521000111 1135566677777777777777777665432 1111 1456
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008727 264 YRIVAEEFKLMGSVFER-EVVLKKKR 288 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 288 (556)
|..+...+.+.|+.++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66667777777777777 55555543
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.1e-06 Score=65.35 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++..+... -+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4444444455555555555555554432 23344455555555555555555555555554321 134444445555555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 008727 518 ETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~ 535 (556)
.|++++|.+.+++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555554443
No 147
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=0.00015 Score=66.50 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHH------
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR-N-KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR------ 417 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------ 417 (556)
+++++++++.+.....+ +..+++.-...+.+. + ++++++++++.+.+..++ +...|+.-.-.+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence 55555555555554322 344444444444444 4 666777777777766554 5566655555544444444
Q ss_pred --HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC-------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--
Q 008727 418 --EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI-- 486 (556)
Q Consensus 418 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 486 (556)
++++.++++.+..+. |...|+.....+.+.++ ++++++.++++.... +-|...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 777777777776554 67777777777766665 567777777777654 45666777666666665543
Q ss_pred ------------------HHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 487 ------------------EGALRLFHNMLEKG-----VAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 487 ------------------~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+..+...++...+ -.++...+..++..|...|+.++|.++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22223322232221 02456667777788888888888888888775
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=7.4e-06 Score=76.37 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc--------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD--------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566667778888888888888888877554321 4788999999999999999999999999875
Q ss_pred CCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 008727 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA-LRLFHNMLE 498 (556)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 498 (556)
.. +...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.+
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67889999999999999999999999999864 45677888999999999999988 456777654
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=7.5e-06 Score=67.34 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=83.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5567888888889999999999999998887543 67788888899999999999999999998864 456788888899
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998865
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=3.3e-06 Score=67.56 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008727 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (556)
Q Consensus 401 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (556)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++..+.. +.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34555566666777777777777777665432 55666667777777777777777777777654 44556666677777
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 008727 481 SEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~ 499 (556)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=8.3e-07 Score=75.84 Aligned_cols=134 Identities=10% Similarity=-0.044 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
...+..+...+...|++++|+..|++..+....-. ...|..+..+|...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33566666677777888888888877776432211 267777888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH-HHHHHhhhCC
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-EVFNKSVNHD 535 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 535 (556)
. +.+...|..+..+|...|++++|.+.|++..+... -+...+..+...+...|+.+++. ..+..+...+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 45677788888888888888888888888876532 24556666666777767666666 5555554443
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=6.5e-06 Score=74.57 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=80.2
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHH
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 197 (556)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++.+.|++++|.+.+++..+.+. -+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5567777888888999999999999988876433 778888889999999999999999998887642 34567777788
Q ss_pred HHHhhCcHHHHHHHHHHHHhc
Q 008727 198 KFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~ 218 (556)
++...|++++|+..|+.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888889999999888887765
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.7e-05 Score=59.43 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (556)
.+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444444455555555555544443211 33444444444444455555555544444432 223444444444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 008727 482 EVGEIEGALRLFHNML 497 (556)
Q Consensus 482 ~~g~~~~A~~~~~~m~ 497 (556)
..|++++|.+.+++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444444
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00028 Score=64.36 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC-HHHHHHH
Q 008727 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRN--KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR-LREAYGV 422 (556)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 422 (556)
+++++.+++.+.....+ +..+++.-...+.+.| .++++..+++.+.+..+. |...|+.-...+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45677777777765432 5566665555566666 478888888888887665 77788777777777787 5888999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhhc--------------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----
Q 008727 423 IQEMKRKGLDPDVSFYNSLMEACCRE--------------DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV----- 483 (556)
Q Consensus 423 ~~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 483 (556)
++.+.+..+. |...|+.....+... +.++++++.++...... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 9988887665 777787776666554 34678888888888764 56777787666666555
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHHccCCHHHHHHHHHHhhhCCCc
Q 008727 484 ------GEIEGALRLFHNMLEKGVAPDATTYTSLLE-----GLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 484 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++++.++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4578899999999865 4553 3432222 222467888999999999988864
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.7e-05 Score=61.78 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=71.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666667777778888888888777766433 56777777777888888888888888877754 4456677777788
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 008727 480 FSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877754
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=7e-06 Score=62.15 Aligned_cols=101 Identities=7% Similarity=-0.040 Sum_probs=67.0
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhhHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLL 512 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~ 512 (556)
...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|.+.+++..+.. .. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455556666667777777777777766653 3455666677777777777777777777777552 11 355666677
Q ss_pred HHHHcc-CCHHHHHHHHHHhhhCCCc
Q 008727 513 EGLCQE-TNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 513 ~~~~~~-g~~~~a~~~~~~m~~~~~~ 537 (556)
..+.+. |++++|.+.+++..+.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777666554
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=9.2e-06 Score=63.41 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC----HhhHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG--VAPD----ATTYTSL 511 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 511 (556)
+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444444555555555555555554432 2234444555555555555555555555544321 0001 1234444
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 008727 512 LEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
..++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555544
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=1.6e-05 Score=60.75 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=88.9
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 513 (556)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 45677888889999999999999999999864 45788899999999999999999999999987632 25778888999
Q ss_pred HHHccCCHHHHHHHHHHhhhCCCc
Q 008727 514 GLCQETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~~~~~~ 537 (556)
++...|++++|.+.+++..+.++.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887764
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1e-05 Score=63.11 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCC----HHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGN----LKTYNI 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 475 (556)
.+..+...+.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556666777777777777777777765433 46667777777777777777777777776531 1111 235666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 777777788888888888877654 45554443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.28 E-value=7.3e-06 Score=65.51 Aligned_cols=100 Identities=13% Similarity=0.000 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3456677788899999999999999999875 55788899999999999999999999999997643 256678888999
Q ss_pred HHccCCHHHHHHHHHHhhhCCC
Q 008727 515 LCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|...|++++|...|++.++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999887654
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=2.4e-05 Score=61.88 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=62.4
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4556666666666667777777776666665332 45566666666666666666666666666653 334556666666
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 008727 479 KFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666666543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=3.5e-05 Score=60.86 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
...|..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+... .+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 4444555555555555555555555555432 23344455555555555555555555555544321 134444445555
Q ss_pred HHccCCHHHHHHHHHHhhh
Q 008727 515 LCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~ 533 (556)
|...|++++|...+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=2.4e-05 Score=64.21 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4556777778888889999999999888876544 6778888888888899999999999888887543 5778888888
Q ss_pred HHhhcCChhhHHHHHHHHHHc
Q 008727 444 ACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888899999999998888875
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=2.3e-05 Score=66.76 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc---------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
.+..+...+...|++++|...|++..+....-. ...|..+..+|...|++++|+..+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344555667788888888888888776433211 26788888899999999999999999888743
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHC
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL-RLFHNMLEK 499 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 499 (556)
. +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..|...
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 67788889999999999999999999998864 446677888888887777777666 555555544
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00084 Score=61.26 Aligned_cols=183 Identities=10% Similarity=-0.058 Sum_probs=103.5
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC-
Q 008727 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQ----------INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK- 133 (556)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 133 (556)
+.|+.++..+....+ -+...|+.--.++...+. ++++..+++.+.... +-+..+|+.-.-.+.+.+
T Consensus 47 ~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 457777776654331 233344443333322222 456666676666654 445566665555555555
Q ss_pred -ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhh---------
Q 008727 134 -NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY-IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN--------- 202 (556)
Q Consensus 134 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 202 (556)
.+++++..++.+.+..+. +..+|+.-.-++...|. ++++++.++.+.+.++ -|...|+.....+...
T Consensus 124 ~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 367777777777766544 66677776666666666 4677777777776543 2555555554444433
Q ss_pred -----CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhcc-----------CCHHHHHHHHHHHhhC
Q 008727 203 -----AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG-----------KRVEEAFKVLDELRIR 255 (556)
Q Consensus 203 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~ 255 (556)
+.++++++.+...... .|.+..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666655 566666665444333333 2345555555555543
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.1e-05 Score=62.39 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +.+...+..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3334444445555555555544443221 34444444444445555555555555444432 223344444444444444
Q ss_pred CHHHHHHHHHHHH
Q 008727 485 EIEGALRLFHNML 497 (556)
Q Consensus 485 ~~~~A~~~~~~m~ 497 (556)
++++|...+++.+
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4445544444444
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=1.5e-05 Score=62.18 Aligned_cols=97 Identities=8% Similarity=0.140 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCC----HHHHHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC--SGN----LKTYNI 475 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 475 (556)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444555555555666666666655555432 1444555555555555666666665555554310 111 445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..+|...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666665543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.5e-05 Score=60.23 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=60.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILI 477 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 477 (556)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 334555556666666666666666666655322 45556666666666666777766666666542 22 456666666
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHC
Q 008727 478 SKFSEV-GEIEGALRLFHNMLEK 499 (556)
Q Consensus 478 ~~~~~~-g~~~~A~~~~~~m~~~ 499 (556)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 7777777777666654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.7e-05 Score=59.65 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (556)
...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|.+.+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444455555555555555555555543 233 3444455555555555555555555555432 223444555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+..+|...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=2.8e-05 Score=59.95 Aligned_cols=97 Identities=11% Similarity=-0.038 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 517 (556)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4445566667777777777777777653 345666777777777777777777777777655322 45566666677777
Q ss_pred cCCHHHHHHHHHHhhhCCC
Q 008727 518 ETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 518 ~g~~~~a~~~~~~m~~~~~ 536 (556)
.|++++|+..+++.++.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 7777777777777766554
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=3.4e-05 Score=60.18 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCC----HhhH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV--APD----ATTY 508 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 508 (556)
...|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788889999999999999999999874 55788899999999999999999999999987531 122 6678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
..+...+.+.|++++|.+.++++.+.++ +......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 8888999999999999999999988764 34444433
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=0.00011 Score=58.84 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhH
Q 008727 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD----SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC 157 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (556)
.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...|...|++++|+..++........ +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 355666666666677777777777777766653 33 455566666666666666666666666554322 45556
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 158 NSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
..+..++...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666665553
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.2e-05 Score=65.58 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLK 471 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 471 (556)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666655442110 11 135666667777777777777777776543 1001 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777888888888888777643 1111 134566677777888888888888887654
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00019 Score=69.50 Aligned_cols=130 Identities=6% Similarity=-0.042 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCH----HhHHHHHHHHHcCCChHHHHHHHHHHHh----CCCCC-ChHh
Q 008727 87 YHSILKSLSLSRQINAIDSVLKQVKVNKIT-LDS----SVYRFIIPSLIQGKNTQKAFSVFNEVKF----NCEDI-GPEI 156 (556)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 156 (556)
+..+...|...|++++|.+.+..+.+.--. .+. .+.+.+-..+...|+.+.|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445555666666666666666554432100 111 1112222223344555565555555432 11111 1234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CC--cc-ChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSHR--GV--EF-STIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
+..|...+...|++++|..++++.... +. .+ ...++..++..|...|++++|...++...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 555555555556666665555554321 10 00 12234444455555555555555554443
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.0002 Score=69.44 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HhH
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDY-FTDM----ESYNVMVSFLCTSGRLREAYGVIQEMKR----KGLDPD-VSF 437 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~ 437 (556)
+..+...|.+.|++++|.+.+..+..... .++. .+.+.+-..+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566667777777777777766543110 0111 1222223333345667777777666543 222222 345
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C-C--Hh
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFAS--GC---SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVA-P-D--AT 506 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 506 (556)
+..+...|...|++++|..+++++... +. .....+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777766543 11 112345666777777777777777777766532 111 1 1 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
.+..+...+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555666777777777666554
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.8e-05 Score=77.53 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=92.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChh
Q 008727 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (556)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 452 (556)
..+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3467889999999999998886544 6778899999999999999999999999887543 6778888999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISK--FSEVGEIEGALRLFH 494 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 494 (556)
+|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999988763 3344555556555 888899999999888
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=5.8e-05 Score=73.58 Aligned_cols=123 Identities=9% Similarity=-0.063 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc--------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008727 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD--------------MESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (556)
Q Consensus 366 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 431 (556)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555666666666666666666655322211 23444455555555555555555555544432
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (556)
. +...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.|+.+++.
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34444455555555555555555555554432 223334444444444444444433
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=4.3e-05 Score=62.21 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cc----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----Hh
Q 008727 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD----VS 436 (556)
Q Consensus 367 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~ 436 (556)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666777888888888888776542111 11 236777888888899999999999886653111 11 45
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.+..+...+...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888999999999999887753 111 12456778888899999999999999987653
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=8e-05 Score=60.89 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------C-CCHhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 008727 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRK--------GL--------D-PDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 400 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (556)
...+......+.+.|++++|+..|.+.... .. . -+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446667777777788888888888776653 00 0 022455556666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 463 ASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 334555666666666666666666666666544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=1.9e-05 Score=60.51 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 414 GRLREAYGVIQEMKRKGL--DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
|++++|+..|++..+.+. .-+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..+|...|++++|.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555544321 1123344444555555555555555555555432 2234444445555555555555555
Q ss_pred HHHHHHH
Q 008727 492 LFHNMLE 498 (556)
Q Consensus 492 ~~~~m~~ 498 (556)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=0.00015 Score=56.48 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 008727 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISK 479 (556)
Q Consensus 406 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 479 (556)
+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 334445555666666666555554221 11 244455555555566666666665555532 112 3445555555
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 008727 480 FSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666655543
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00017 Score=56.01 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 156 ICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
++..+..++.+.|++++|...|+...+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=2.3e-05 Score=76.77 Aligned_cols=119 Identities=13% Similarity=0.011 Sum_probs=92.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHH
Q 008727 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (556)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 420 (556)
+..|++++|++.|++..+.. +.+...+..+..+|.+.|++++|.+.+++..+..+. +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 44689999999999998874 235788889999999999999999999999987654 6778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHH--HhhcCChhhHHHHHHHHH
Q 008727 421 GVIQEMKRKGLDPDVSFYNSLMEA--CCREDLLRPAKKLWDQMF 462 (556)
Q Consensus 421 ~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~ 462 (556)
+.+++..+.... +...+..+..+ +.+.|++++|.+.+++..
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999998886433 34455555555 788899999999988643
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=8.9e-05 Score=72.26 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=80.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
....|..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345566666667777777777777777665422211 456667777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH-HHHHHh
Q 008727 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF-EVFNKS 531 (556)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 531 (556)
. +.+...|..+..+|...|++++|...|+++++... -+...+..+..++.+.|+.+++. ..+++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34566667777777777777777777777765421 13455666666666666666554 334444
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.89 E-value=0.00018 Score=58.80 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------DY---------FTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 427 (556)
...+......+.+.|++++|...|+...+. .+ +.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566667778888888888888876653 10 1133567777788888888888888888887
Q ss_pred HCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 008727 428 RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464 (556)
Q Consensus 428 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (556)
+.... +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76433 5677778888888888888888888888775
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=4.5e-05 Score=58.38 Aligned_cols=86 Identities=15% Similarity=0.025 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHHHhCC--CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 378 RNKSDELVEVYKVLSAND--YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1124456777777777777888888777777776443 4667777777777778888888
Q ss_pred HHHHHHHHc
Q 008727 456 KLWDQMFAS 464 (556)
Q Consensus 456 ~~~~~~~~~ 464 (556)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00044 Score=54.55 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGA 489 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 489 (556)
++.++|.+.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666665 22222 5555555566666777777766643 45555666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHhhhCCCc
Q 008727 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 490 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 537 (556)
.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 77777776664 44555566666666 66777777777777666643
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00017 Score=68.01 Aligned_cols=89 Identities=12% Similarity=-0.011 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
..+|..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|++++|.+.|+++.+... -+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455555555556666666666666655532 23445555556666666666666666666554421 134444444555
Q ss_pred HHccCCHHHHH
Q 008727 515 LCQETNLQAAF 525 (556)
Q Consensus 515 ~~~~g~~~~a~ 525 (556)
+.+.++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=4.1e-05 Score=71.34 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 444 (556)
...+..+...+.+.|++++|...|+...+.. |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555566667777777777777766542 22211 112233333322221 1377888899
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHH-HHccCCHH
Q 008727 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEG-LCQETNLQ 522 (556)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~ 522 (556)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 456788999999999999999999999998754 443 3344444443 23456778
Q ss_pred HHHHHHHHhhhCCCc
Q 008727 523 AAFEVFNKSVNHDVM 537 (556)
Q Consensus 523 ~a~~~~~~m~~~~~~ 537 (556)
++..+|++|.+..+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888899988776653
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00014 Score=68.55 Aligned_cols=124 Identities=6% Similarity=-0.051 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSA----------------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 365 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
...+..+...+.+.|++++|.+.|++..+ ... .+...|..+..+|.+.|++++|+..+++..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34466666777788888888888887765 111 1345677777778888888888888888777
Q ss_pred CCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008727 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (556)
Q Consensus 429 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (556)
.... +...|..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 302 ~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 56677777788888888888888888877753 3355666666666666666665543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=0.00058 Score=54.40 Aligned_cols=96 Identities=15% Similarity=0.015 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-----CC
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDP------D-----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----GC 466 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 466 (556)
+......+.+.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444445555666666666666655542210 1 126666666666777777777666666653 11
Q ss_pred CC-CHHHH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 467 SG-NLKTY----NILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 467 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.| +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33 34455 6666667777777777777776654
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=0.00021 Score=56.94 Aligned_cols=97 Identities=14% Similarity=-0.016 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--------L-----KTYNILISKFSEVGEIEGALRLFHNMLEK--- 499 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 499 (556)
..+......+.+.|++++|.+.|++..+. .|+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 44566777888999999999999999985 343 2 38999999999999999999999999874
Q ss_pred --CCCCC-HhhH----HHHHHHHHccCCHHHHHHHHHHhhhC
Q 008727 500 --GVAPD-ATTY----TSLLEGLCQETNLQAAFEVFNKSVNH 534 (556)
Q Consensus 500 --g~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 534 (556)
.+.|+ ...| .....++...|++++|+..|++.++.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12554 4567 78889999999999999999998763
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.0014 Score=65.38 Aligned_cols=154 Identities=9% Similarity=0.055 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcC
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 449 (556)
..++|.+.++.+...++. +..+|+.--..+...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345778888888876655 56677766666666666 89999999999988666 7788888888888888
Q ss_pred --ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--------
Q 008727 450 --LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG-EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE-------- 518 (556)
Q Consensus 450 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------- 518 (556)
+++++.+.++++.+.. +-|..+|+.-..++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6699999999999876 668888988888888888 899999999999876544 677777766666552
Q ss_pred ------CCHHHHHHHHHHhhhCCCc
Q 008727 519 ------TNLQAAFEVFNKSVNHDVM 537 (556)
Q Consensus 519 ------g~~~~a~~~~~~m~~~~~~ 537 (556)
+.++++++.+++.++.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999999887765
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=3.7e-05 Score=58.04 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------Hh
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-------AT 506 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 506 (556)
+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666777777777777666653 345566666677777777777777777777643 343 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHH
Q 008727 507 TYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
.+..+..++...|+.++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3344444444444444444333
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.00033 Score=53.21 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 418 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+|+..|++..+.... +...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555544322 44555555556666666666666666655543 3334555555556666666666666665555
Q ss_pred H
Q 008727 498 E 498 (556)
Q Consensus 498 ~ 498 (556)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.00016 Score=67.33 Aligned_cols=139 Identities=9% Similarity=-0.027 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHH
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREA 419 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 419 (556)
.+..+++++|+..|++..... |+... +...|+.+++...+ ....|..+..+|.+.|++++|
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTTCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcCCHHHH
Confidence 345789999999999987753 33221 22233333333222 123778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHH
Q 008727 420 YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 420 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 498 (556)
+..+++..+.... +...|..+..+|...|++++|...|+++.+.. +-+...+..+... ....+..+++.+.|.+|..
T Consensus 250 ~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 250 IGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999998886433 67888899999999999999999999988653 2244455555554 3345667788888888875
Q ss_pred C
Q 008727 499 K 499 (556)
Q Consensus 499 ~ 499 (556)
.
T Consensus 328 ~ 328 (338)
T 2if4_A 328 G 328 (338)
T ss_dssp -
T ss_pred C
Confidence 4
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.60 E-value=0.0053 Score=61.23 Aligned_cols=150 Identities=8% Similarity=0.017 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhC-
Q 008727 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY----------IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENA- 203 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 203 (556)
.++|++.++++....++ +..+|+.--.++...|+ ++++++.++.+.+.+.+ +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666666555433 45566655555555555 66666666666665422 4455555555566666
Q ss_pred -cHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------
Q 008727 204 -KLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK-RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM------- 274 (556)
Q Consensus 204 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------- 274 (556)
+++++++.++.+.+. .|.+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 556666666666665 5555666665555555666 667777777776665433 555666555554432
Q ss_pred -------CCHHHHHHHHHHHHhc
Q 008727 275 -------GSVFEREVVLKKKRKL 290 (556)
Q Consensus 275 -------~~~~~a~~~~~~~~~~ 290 (556)
+.++++++.+++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 3356666666665553
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.0022 Score=50.41 Aligned_cols=110 Identities=12% Similarity=0.039 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhh----cCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 455 (556)
++++|.+.|++..+.+. .... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666655542 1122 4455555556666777776666653 45556666666665 56777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKG 500 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 500 (556)
+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776643 45555666666666 677777777777777665
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.00047 Score=67.10 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008727 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRI-----REC-KPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (556)
Q Consensus 225 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 290 (556)
....++.|...|...|++++|+.++++..+ .|. .|++ .+.+.+-.++...+.+++|+.+|..+.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666555555432 121 1222 23344444555666666666666666553
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=8.1e-05 Score=56.10 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC------hHhH
Q 008727 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG------PEIC 157 (556)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 157 (556)
...|..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|++.+++.....+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 3455555566666666666666666665543 345555666666666666666666666666554322 2 3344
Q ss_pred HHHHHHHHhcCCHhHHHH
Q 008727 158 NSLLAVLASDGYIDNALK 175 (556)
Q Consensus 158 ~~li~~~~~~g~~~~a~~ 175 (556)
..+..++...|+.+.|.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444444444444444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00078 Score=51.06 Aligned_cols=79 Identities=11% Similarity=-0.046 Sum_probs=53.2
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (556)
.+...|+...+.. +.+...+..+...|...|++++|+..|++.....+. +...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666666554 445666777777777777777777777777665433 56677777777777777777777777765
Q ss_pred h
Q 008727 182 H 182 (556)
Q Consensus 182 ~ 182 (556)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00034 Score=68.13 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=63.8
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHhhcCChhhHHHHHHHHHHc-----C-CCCC-HHHHHHH
Q 008727 411 CTSGRLREAYGVIQEMKRK---GLDPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----G-CSGN-LKTYNIL 476 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 476 (556)
...|++++|+.++++..+. -+-|+ ..+++.|..+|...|++++|..++++..+. | -.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666666554432 11111 235566666666666666666666655432 1 0121 3446666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC-----CCC-CC-HhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 477 ISKFSEVGEIEGALRLFHNMLEK-----GVA-PD-ATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
...|...|++++|+.++++..+. |.. |+ ..+...+-.++...|.+++|..++.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665532 211 11 12233344455556666666666666644
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=0.00038 Score=55.35 Aligned_cols=94 Identities=9% Similarity=0.074 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL----------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (556)
+.+++|.+.++...+.... +...|+.+..++...++ +++|+..|++.++.. +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3444555555554444322 44444444444444443 336666666666543 23445566666666554
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 008727 484 -----------GEIEGALRLFHNMLEKGVAPDATTYTSL 511 (556)
Q Consensus 484 -----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 511 (556)
|++++|++.|++.++. .|+...|...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3677777777777644 4554444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.41 E-value=0.0017 Score=46.38 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 008727 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (556)
Q Consensus 403 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (556)
+..+...+...|++++|...+++..+.... +...+..+..++...|++++|.+.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444433211 233334444444444444444444444443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=0.0006 Score=54.19 Aligned_cols=100 Identities=9% Similarity=-0.017 Sum_probs=75.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008727 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 445 (556)
.+.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4556778888888888776655 77778777777777665 45899999998887544 567888899988
Q ss_pred hhcC-----------ChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008727 446 CRED-----------LLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (556)
Q Consensus 446 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (556)
...| ++++|.+.|++..+. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8764 899999999999985 6776666544443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0018 Score=46.26 Aligned_cols=63 Identities=2% Similarity=-0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 148 (556)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444445555555555555555554433 233444455555555555555555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.0011 Score=48.72 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666666653 33455666666666666666666666666553
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.0029 Score=46.37 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=36.7
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
+...+..+...|...|++++|+..|++..+..+. +..+|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666666665554332 445566666666666666666666655543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.013 Score=53.79 Aligned_cols=137 Identities=10% Similarity=0.003 Sum_probs=82.5
Q ss_pred ccHhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhh---cC-Ch-hhH---HHHHHHHHH
Q 008727 398 TDMESYNVMVSFLCT--SG---RLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCR---ED-LL-RPA---KKLWDQMFA 463 (556)
Q Consensus 398 ~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~-~~-~~a---~~~~~~~~~ 463 (556)
.+...|...+++... .+ ...+|..+|++..+. .|+ ...|..+..+|.. .+ .. ... .+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355666666655432 22 346777777777775 343 2334333333321 11 10 111 111111111
Q ss_pred -cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcc
Q 008727 464 -SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML 538 (556)
Q Consensus 464 -~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 538 (556)
..-+.+..+|..+...+...|++++|...++++++.+ |+...|..+...+.-.|++++|.+.+++..+.++.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1125567778777777777788888888888888774 677777777777888888888888888888877654
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.0079 Score=47.23 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVG---EIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVF 528 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (556)
+.+.|.+..+.| .++..+.-.+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344333333 244444444444455444 3334555555544432 12 1223333444445555555555555
Q ss_pred HHhhhCCC
Q 008727 529 NKSVNHDV 536 (556)
Q Consensus 529 ~~m~~~~~ 536 (556)
+++++..|
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 55544443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.0033 Score=45.87 Aligned_cols=57 Identities=11% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
...+...|++++|.+.++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555666666666666666542 23344 5666666666666666666666666654
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.65 E-value=0.043 Score=50.32 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=61.2
Q ss_pred CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008727 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 509 (556)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4467788887777777899999999999999874 78888888888899999999999999998865 56777764
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.14 Score=53.85 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=80.2
Q ss_pred HHcCCChHHHHH-HHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 129 LIQGKNTQKAFS-VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 129 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
....+++++|.+ ++..+. +......++..+.+.|..++|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345666776665 442211 02233666666777777777766542111 11223455677777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+..
T Consensus 671 A~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 671 ARDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 77765432 3356777777777777777777777777652 223333444455555544444443
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008727 288 RKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (556)
Q Consensus 288 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (556)
...| -++....++.+.|++++|.+++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333444555555555543
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.52 E-value=0.0093 Score=56.96 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=44.5
Q ss_pred CChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HhhHHHHHHH
Q 008727 449 DLLRPAKKLWDQMFAS---GCSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK-----G-VAPD-ATTYTSLLEG 514 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~~~ 514 (556)
|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555565555555432 11111 345566666666666666666666665432 2 1121 2345566666
Q ss_pred HHccCCHHHHHHHHHHhh
Q 008727 515 LCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~ 532 (556)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666553
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.33 E-value=0.03 Score=40.09 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=34.3
Q ss_pred CHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 DVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444455554443332 456666666665543 334455555555556666666666666666543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.31 E-value=0.023 Score=41.18 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHH
Q 008727 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541 (556)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 541 (556)
....+...|++++|.+.|++..+... .+.. .+..+..+|...|++++|.+.|++.++.++.....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45678889999999999999987632 2456 78888899999999999999999999888765443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.30 E-value=0.025 Score=54.08 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=41.8
Q ss_pred hcCChhhHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HhhHHHHH
Q 008727 447 REDLLRPAKKLWDQMFASG---CSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEK-----G-VAPD-ATTYTSLL 512 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~ 512 (556)
..|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455555555555554320 1111 334555555555566666665555555431 1 1111 23355555
Q ss_pred HHHHccCCHHHHHHHHHHh
Q 008727 513 EGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~m 531 (556)
..|...|++++|..++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 5566666666666666554
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.24 E-value=0.016 Score=55.39 Aligned_cols=89 Identities=10% Similarity=-0.008 Sum_probs=62.4
Q ss_pred hhCcHHHHHHHHHHHHhcc-----CCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC-CCCCH-HHHHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRE-----NSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI-----RE-CKPDF-IAYRIVA 268 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll 268 (556)
..|++++|+.++++..... ...|....+++.|...|...|++++|+.++++... .| -.|++ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3477888888888776431 22233345677888888888898888888887653 22 23443 4678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 008727 269 EEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~ 289 (556)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.17 E-value=0.16 Score=53.48 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=24.5
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHH
Q 008727 164 LASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 216 (556)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34455555555553322 233455555555555555555555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.17 E-value=0.024 Score=54.26 Aligned_cols=63 Identities=11% Similarity=-0.112 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 227 VIAVLIIHGFCKGKRVEEAFKVLDELRI-----RE-CKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 227 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
.+++.+...|...|++++|+.++++... .| -.|++ .+++.|...|...|++++|+.++++..+
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555554432 11 12222 3455566666666666666666655443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.06 E-value=0.064 Score=47.12 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhhc-----CChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-C
Q 008727 416 LREAYGVIQEMKRKGLDPD---VSFYNSLMEACCRE-----DLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEV-G 484 (556)
Q Consensus 416 ~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-g 484 (556)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+. .| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666666664 444 34666777777663 7777777777777774 34 356666666666663 7
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 008727 485 EIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 485 ~~~~A~~~~~~m~~~g~~ 502 (556)
+.+++.+.+++.++....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 777777777777766444
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.051 Score=38.90 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=35.0
Q ss_pred CCHHhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 117 LDSSVYRFIIPSLIQGKN---TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 117 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
.+...+..+..++...++ .++|..++++.....+. ++.+...+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555554433322 45555555555554333 4555555555566666666666666665554
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.83 E-value=0.41 Score=36.18 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=89.7
Q ss_pred hHHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHH
Q 008727 121 VYRFIIPS--LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (556)
Q Consensus 121 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 198 (556)
+...|+++ +.-.|..++..++..+..... +..-||-+|.-....-+-+-..++++.+-+. .|.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------- 71 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------- 71 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG---------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------
Confidence 34444444 445677778888777776542 5666777777666666666666666655331 121
Q ss_pred HHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008727 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (556)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 278 (556)
...|++......+-.+.. +.......++.....|.-+.-.+++.++.. +.+|+....-.+..+|.+.|+..
T Consensus 72 -s~C~NlKrVi~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp -GGCSCTHHHHHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred -HhhhcHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence 122333333333322211 133444556777777888888888777543 23667777777778888888888
Q ss_pred HHHHHHHHHHhcCCC
Q 008727 279 EREVVLKKKRKLGVA 293 (556)
Q Consensus 279 ~a~~~~~~~~~~~~~ 293 (556)
++.+++.+.-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 888888877777764
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.25 Score=39.85 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=48.0
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHH
Q 008727 128 SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ 207 (556)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (556)
...+.|+++.|.++.+.+. +...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3445555555555555441 455566666666666666666665554432 2223333444555544
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 008727 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDE 251 (556)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 251 (556)
..++-+....+ | -++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~-g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTR-E-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHT-T-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC-c-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443333332 1 112223334445555555555543
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.67 Score=37.33 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=93.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (556)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 55566889999999988765 3688999999999999999999999998753 45666677778888
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 250 (556)
+...++-+.....| -++.....+...|+++++.++|.+..+. ..++ ......|..+.|.++.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~-------~eA~----~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL-------PLAY----AVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-------HHHH----HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-------HHHH----HHHHHcCcHHHHHHHHH
Confidence 88777766665554 2445555677889999999998765432 1111 11122456677777776
Q ss_pred HH
Q 008727 251 EL 252 (556)
Q Consensus 251 ~m 252 (556)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.59 E-value=0.074 Score=40.07 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCCHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEG---ALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFE 526 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~ 526 (556)
..+.+-|......| .++..+--.+..++.+..+..+ ++.++++....+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444443333 2444444445555555554444 555555544432 11 22223334445566666666666
Q ss_pred HHHHhhhCCC
Q 008727 527 VFNKSVNHDV 536 (556)
Q Consensus 527 ~~~~m~~~~~ 536 (556)
+++.+++..|
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 6666655544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.57 E-value=0.11 Score=40.70 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=49.1
Q ss_pred hHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC---ChHHHHHHHHHHHhCC-CCCChHhHHHHHHHHHhcCCHhHHHHH
Q 008727 101 NAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK---NTQKAFSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKM 176 (556)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (556)
..+++.|.+..+.+ +++..+.-.+.-++++.+ +.++++.+++.+.+.. +.-+...+-.|.-+|.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555544 356666666666666666 5557777777766653 111344555566666777777777777
Q ss_pred HHHHHhC
Q 008727 177 FDEMSHR 183 (556)
Q Consensus 177 ~~~m~~~ 183 (556)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777664
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.36 E-value=0.26 Score=43.36 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHhCCCC-ccHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc-CChh
Q 008727 380 KSDELVEVYKVLSANDYF-TDMESYNVMVSFLCT-----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-DLLR 452 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~ 452 (556)
....|...+++..+..+. .+...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 345666667766665322 124467777777777 378888888888887764322366666677777774 7888
Q ss_pred hHHHHHHHHHHcCCC
Q 008727 453 PAKKLWDQMFASGCS 467 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~ 467 (556)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888876433
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.32 E-value=0.19 Score=38.96 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHhHhCCCCCCHH----hHHHHHHH---HHcCCChHHHHHHHHHHHhC
Q 008727 82 HSPLSYHSILKSLSLSRQI------NAIDSVLKQVKVNKITLDSS----VYRFIIPS---LIQGKNTQKAFSVFNEVKFN 148 (556)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~~li~~---~~~~~~~~~a~~~~~~~~~~ 148 (556)
.|.++|-..+..+-+.|++ +..+++|++.... ++|+.. .|-.|.-- +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888888 8888999988774 455421 11111111 12347888888888888665
Q ss_pred CCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC
Q 008727 149 CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (556)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 188 (556)
.-+- ..+|....+.-.+.|+++.|.+++......+..|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3333 66777777777888888888888888888765543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.30 E-value=0.13 Score=37.60 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASG------CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..-+..+...+...+++..|...|+.+.+.- -.+....+..|..+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445567777777777777777777766531 1234566777777777777777777777777653
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.13 E-value=0.76 Score=34.79 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 501 (556)
.....+......|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444444444444444443322 144444444444555555555555555555554443
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.96 E-value=0.23 Score=36.26 Aligned_cols=65 Identities=8% Similarity=-0.071 Sum_probs=30.3
Q ss_pred CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCC------CCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC------EDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
+..-+..|...+.+.|+++.|...|+...+.. ......++..|..++.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444445555555555555555555543310 011333444455555555555555555554444
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.88 E-value=0.0052 Score=57.69 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=18.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKL 273 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 273 (556)
++..|-..|.+++.+.+++.-... -+.....|+-|.-.|++
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 344445555555555555544321 12234444444444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.10 E-value=1.1 Score=34.77 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
+|+++|.++|+.+++.. +-=...|.....--.++|+...|.+++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665442 111444544444455666666666666666655444
No 235
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.06 E-value=3.1 Score=37.19 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHH----HHHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK----MFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~li 196 (556)
+|..+..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455566667777778777777655421 2334455444333 344455556666666655555
Q ss_pred HHHHhhCc-----HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 008727 197 WKFCENAK-----LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (556)
Q Consensus 197 ~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 249 (556)
..+..... ..-..+.+....+..+....++.....+...|.+.|++.+|..-|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 54433211 111111122222221112233445555555566666665555544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.30 E-value=0.98 Score=33.98 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhh---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP---AKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGA 489 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 489 (556)
....+.+-+.+....|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555444 567777777778877776555 788888877754 23 233444566788888888888
Q ss_pred HHHHHHHHHC
Q 008727 490 LRLFHNMLEK 499 (556)
Q Consensus 490 ~~~~~~m~~~ 499 (556)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888865
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.01 E-value=5 Score=36.20 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHH----HHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKM----FDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~li 196 (556)
+|..+..-|.+.+++++|++++-.-. ..+.+.|+...|-++ ++...+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556677777777777655432 123334443333322 34444555666665555555
Q ss_pred HHHH
Q 008727 197 WKFC 200 (556)
Q Consensus 197 ~~~~ 200 (556)
..+.
T Consensus 102 ~L~~ 105 (336)
T 3lpz_A 102 GCLR 105 (336)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.73 E-value=0.015 Score=54.68 Aligned_cols=198 Identities=9% Similarity=0.074 Sum_probs=127.8
Q ss_pred CCCCCCChhHHHHHHhcCCCCCC-------CHHHHHHHhhhhhcc-ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 008727 25 RPARKWTPLLEQTLHQLGLRDSL-------SPSLVARVINPYLLT-HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSL 96 (556)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~l~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~ 96 (556)
.-+.-|+..-.+.|....++..+ +|+.+..|+...... .++.-++++..+++. . .++..=+.++-+|++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C--CSTTTTHHHHHHHHT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cccccHHHHHHHHHh
Confidence 34456877777766665444322 455566666665553 355556655544332 2 233444578889999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhC--------------------CCCCChHh
Q 008727 97 SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN--------------------CEDIGPEI 156 (556)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~ 156 (556)
.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+... ...-++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 988776554432 356666667777787888877777777655311 11236678
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 008727 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (556)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (556)
|-.+-.+|...+.+.-|.-.--.++-. ..-...++.-|-..|.+++.+.+++.... .......+|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg---lErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC---CCchhHHHHHHHHHHH
Confidence 999999999999988886664444321 12223456678889999999999988873 3555577888888888
Q ss_pred hccC
Q 008727 237 CKGK 240 (556)
Q Consensus 237 ~~~~ 240 (556)
++-.
T Consensus 274 sKY~ 277 (624)
T 3lvg_A 274 SKFK 277 (624)
T ss_dssp HSSC
T ss_pred HhcC
Confidence 8763
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=9.4 Score=36.42 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=29.8
Q ss_pred ccChhHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHh
Q 008727 61 LTHHSLALGFFNWASQ----QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112 (556)
Q Consensus 61 ~~~~~~a~~~f~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (556)
.+++..|++-+..+.+ ..+...+......++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556666665544432 233444556666677777777777776665554443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.56 E-value=5.5 Score=43.47 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-----------------------CCHH
Q 008727 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKIT-----------------------LDSS 120 (556)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~ 120 (556)
...+..+..|.. .++..-..+..++...|++++|.+.|++... |+. .-..
T Consensus 828 ~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 900 (1139)
T 4fhn_B 828 YNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSC 900 (1139)
T ss_dssp TTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHH
T ss_pred HHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHH
Confidence 344555555542 1333333455666677777777777765421 100 0112
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChhhHHHHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP----EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 196 (556)
-|..++..+-+.|.++.+.+.-....+...+-+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455566666666666666655554432211111 2466666666666777776666666654432 233444555
Q ss_pred HHHHhhCcH
Q 008727 197 WKFCENAKL 205 (556)
Q Consensus 197 ~~~~~~g~~ 205 (556)
..+|..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555555443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.45 E-value=15 Score=38.37 Aligned_cols=276 Identities=10% Similarity=0.009 Sum_probs=145.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCChhhHH
Q 008727 230 VLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKLGV-------APRTNDYR 300 (556)
Q Consensus 230 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~ 300 (556)
...--+....|+.++++.+++.....+-..+. ..-..+.-+....|...++.+++.......- .+....-.
T Consensus 378 A~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gA 457 (963)
T 4ady_A 378 ATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGA 457 (963)
T ss_dssp HHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred HHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHH
Confidence 33445667788888888888776642111222 2233333445556665667777766554321 01111122
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHcCCCCCCHHHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 008727 301 EFILGLIVERR-ICEAKELGEVIVSGKFTIDDDVLNAL----IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN- 374 (556)
Q Consensus 301 ~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 374 (556)
.+--+++-.|. -+++.+.+..++...-. .....+. +-.+..|+.+....++..+.+.. +..+...+.-+
T Consensus 458 aLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgL 532 (963)
T 4ady_A 458 SLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHH
Confidence 23223333332 23445555544432211 1111222 22234567666666666665532 33333334333
Q ss_pred -HHhcCChHHHHHHHHHHHhCCCCccHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCCh
Q 008727 375 -LCKRNKSDELVEVYKVLSANDYFTDMESYN--VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (556)
Q Consensus 375 -~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 451 (556)
+...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 446788888888888877641 22222222 23345667788877777888887642 22333333333344456777
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 008727 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI-EGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (556)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 516 (556)
+.+.++++.+.+.+ .|....-..+.-+....|+. .+|.+++..+.. .+|..+-...+.++.
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 77888887776654 55555545555555555554 577888888863 245555444444443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.37 E-value=0.81 Score=42.94 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATTYT 509 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 509 (556)
...++..+...|+++++...+..+.... +-+...|..++.+|.+.|+..+|++.|++..+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566677788888887777777653 55677788888888888888888888777654 37888766543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.01 E-value=1.4 Score=45.03 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=44.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 008727 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (556)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 253 (556)
+.+...|+++.|+++-++.... .|.+-.+|..|...|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888866 77888888888999999999999888888874
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.87 E-value=14 Score=36.88 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHhCCCCccHhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHH
Q 008727 380 KSDELVEVYKVLSANDYFTDMESYN----VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (556)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (556)
+.+.|...+....+.... +..... .+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 556666666665432211 222221 12222222232334445555443332 22222222333334556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
..|+.|..... ....-.--+..++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666654211 112222234445566666666666666665
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.61 E-value=1.4 Score=44.97 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008727 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
..|...|+++-|+++-++....- +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888888887752 3447788888888888888888888887763
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.32 E-value=2.9 Score=29.69 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 008727 99 QINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (556)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 162 (556)
+.-++++-++.+...++-|++.+..+.+++|.+.+++..|+++|+.++..-.. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44556666666666667777777777777777777777777777777543211 2334555544
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.21 E-value=1.1 Score=41.94 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=54.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCccChhhHH
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH-----RGVEFSTIGFG 193 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 193 (556)
+...++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 44556777788888888888888876653 34777888888888888888888888887643 48888776654
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.13 E-value=13 Score=35.39 Aligned_cols=97 Identities=8% Similarity=-0.039 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHhh----CCCCCCH--HH
Q 008727 193 GVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRI----RECKPDF--IA 263 (556)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~ 263 (556)
..|...+...|++.+|..++..+........+. ...+..-++.|...+++..|..++..... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345555666666666666666655321111111 22344555666666666666666655431 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKKRK 289 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 289 (556)
|...+..+...+++.+|-..|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44455555556666666655555443
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.96 E-value=3.8 Score=29.15 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.35 E-value=16 Score=33.97 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=10.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 008727 231 LIIHGFCKGKRVEEAFKVLDEL 252 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m 252 (556)
.-+..|...+++..+...+...
T Consensus 144 le~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 144 LESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555443
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.62 E-value=30 Score=36.27 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=136.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHcCCC--CCC---H-HHHHHHHHH-
Q 008727 270 EFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVERRICEAKELGEVIVSGKF--TID---D-DVLNALIGS- 340 (556)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~-~~~~~l~~~- 340 (556)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- ..+ . ....+.+..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3556777778877776654421111222 122223355566665667776666554321 011 1 111222211
Q ss_pred H-hcC-ChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHH--HHHhcC
Q 008727 341 V-SSI-DPRSAIVFFNFMIEKGRVPTLSTLS--NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS--FLCTSG 414 (556)
Q Consensus 341 ~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~ 414 (556)
+ ..| .-+++.+.+..+...... ...... .+...+...|+.+....++..+.+.. +..+...+.. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 1 122 345666666666653321 111122 23333556788888888888776642 2233333333 444678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFY--NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (556)
+.+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888888764 12222211 234456788889888888999888642 33444334444455567777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHhhh
Q 008727 493 FHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEVFNKSVN 533 (556)
Q Consensus 493 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 533 (556)
++.+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77665543 33333333333444445443 577778877753
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.01 E-value=8.8 Score=29.46 Aligned_cols=69 Identities=6% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCC
Q 008727 468 GNLKTYNILISKFSEVGEI---EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (556)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 536 (556)
|+..+--.+.+++.+..+. .+++.+++.....+..-.....-.+.-++.+.|++++|.++.+.+++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3333333344444444433 23444444444332111222333344455555555555555555555443
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.00 E-value=4.3 Score=30.65 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+-++.+...++.|++....+.+.+|-+.+++..|.++|+-.+.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555555555555444
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.68 E-value=8.5 Score=42.01 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 008727 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL------------------ 431 (556)
Q Consensus 370 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------ 431 (556)
.++..+.+.+..+.+.++..-... +...--.+..+|...|++++|.+.|++... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 345556666666666554433222 333334455566777777777777765321 11
Q ss_pred -----CCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 008727 432 -----DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (556)
Q Consensus 432 -----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 502 (556)
..-..-|..++..+.+.+.++.+.++-....+..-..+ ...|..+.+++...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 00123356677777777777777777766665421111 125677777788888888888877777665433
Q ss_pred CCHhhHHHHHHHHHccCCH
Q 008727 503 PDATTYTSLLEGLCQETNL 521 (556)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~ 521 (556)
...+..++..++..|..
T Consensus 971 --~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHhCCCh
Confidence 45566666666655543
No 255
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.80 E-value=3.4 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=7.7
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 008727 343 SIDPRSAIVFFNFMIEKGR 361 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~ 361 (556)
.++.....++++.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3333333344444444443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.77 E-value=11 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008727 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 428 (556)
+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555554443
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.05 E-value=12 Score=28.40 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
.+.-++.+.|++++|.++.+.+++..
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 33344444444444444444444433
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.99 E-value=12 Score=28.32 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCCHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 432 DPDVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|+..+-.....++.+..+ ..+++.+++++.+.+-.-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555555555555555543 3456666766666541112344455666777777777777777777643
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.82 E-value=12 Score=29.66 Aligned_cols=62 Identities=6% Similarity=-0.120 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCCh-------HhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008727 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGP-------EICNSLLAVLASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 121 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (556)
.+..-++.+...|.++.|+-+.+.+.... .++++ .++..+.+++...|++..|...|++..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444666677777777777776654321 12221 2455666666777777777777776543
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.72 E-value=4.4 Score=32.10 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCC-CCCC-------HHhHHHHHHHHHcCCChHHHHHHHHHHH
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNK-ITLD-------SSVYRFIIPSLIQGKNTQKAFSVFNEVK 146 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 146 (556)
.-++.+...+.++.|+-+.+.+.... ..++ ..++..+..++...|++..|...|++..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34666777788888777766654421 1122 1355667777888888888888888763
No 261
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.48 E-value=4.5 Score=27.67 Aligned_cols=61 Identities=8% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 495 NMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 495 ~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+.+.|+|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556677665543 34556665553 4455677777777777777777777777888888774
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.44 E-value=5.3 Score=34.58 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=25.5
Q ss_pred HhhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 200 CENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 200 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
.+.|+++++++....-.+. .|.+......++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555444444443 344444444555555555555555555544443
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.35 E-value=25 Score=28.89 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=44.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 008727 448 EDLLRPAKKLWDQMFASGCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (556)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 503 (556)
.++...+.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446788899999988876544 5567888888888999999999999988887776
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.32 E-value=25 Score=33.31 Aligned_cols=99 Identities=14% Similarity=-0.105 Sum_probs=60.6
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--ccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhccCCCCCchhhH---
Q 008727 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGV--EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIA--- 229 (556)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 229 (556)
.++..+...|.+.|+++.|.+.|.++...-. .--...+-..++.+...+++..+...+..+........+ ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 3667788888888888888888888776322 222345666777777888888888887777643111111 1111
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHhh
Q 008727 230 -VLIIHGFCKGKRVEEAFKVLDELRI 254 (556)
Q Consensus 230 -~~li~~~~~~~~~~~A~~~~~~m~~ 254 (556)
..-...+...+++..|.+.|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122233456777777777766543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.25 E-value=7.9 Score=33.51 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=26.1
Q ss_pred HhcCCHhHHHHHHHHHHhCCCccChhhHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 165 ASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
.+.|+++++++....-++.. +-|...-..++..+|-.|+|++|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455555555555444442 123444444555555555555555555555444
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.43 E-value=6.3 Score=34.52 Aligned_cols=201 Identities=9% Similarity=-0.048 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---HHHHHHHHH
Q 008727 266 IVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN---DYREFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALIG 339 (556)
Q Consensus 266 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 339 (556)
+.+...++.|+.+.+..+ .+.|..++.. .-...+...+..|+.+-+..+ .+.|..++ ..-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHH
Confidence 345556677877654444 4555544422 112344555566776544444 34444332 222344444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHh-------------hH
Q 008727 340 SVSSIDPRSAIVFFNFMIEKGRVPTLS---TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-------------SY 403 (556)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------~~ 403 (556)
+...|+. ++++.+.+.|..++.. -.+ .+...+..|+.+-+ +.+.+.|..++.. ..
T Consensus 79 A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSV----KLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCH----HHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCH----HHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCC
Confidence 4445554 3445555566554321 122 23334456665443 3344444433321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH--HHHHH
Q 008727 404 NVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDV---SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT--YNILI 477 (556)
Q Consensus 404 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li 477 (556)
+ .+...+..|+.+-+.. +.+. |..++. ...+.+ ...+..++.....++.+.+.+.|..++... -.+.+
T Consensus 150 t-~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 150 T-ALMDAAEKGHVEVLKI----LLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp C-HHHHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred c-HHHHHHHcCCHHHHHH----HHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 2 2333344565544333 3333 443332 222333 333445555566677777777776655321 12234
Q ss_pred HHHHccCCHHHH
Q 008727 478 SKFSEVGEIEGA 489 (556)
Q Consensus 478 ~~~~~~g~~~~A 489 (556)
...++.|+.+-+
T Consensus 224 ~~A~~~~~~~~v 235 (285)
T 1wdy_A 224 ILAVEKKHLGLV 235 (285)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHcCCHHHH
Confidence 444556665443
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.00 E-value=23 Score=27.20 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=40.4
Q ss_pred CCCHhHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 008727 432 DPDVSFYNSLMEACCREDL---LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.|+..+-.....++.+..+ ..+++.+++.+.+.+-.-.....-.|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555566665543 4456667777666432122333445556777777777777777777754
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.98 E-value=17 Score=25.75 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 008727 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (556)
.++|.-+-+-+...+. ...+--+-+..+...|++++|..+.+... .||...|-.|.. .+.|..+++...+.+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4455555555544321 11111122334556666666666655443 566666654432 356666666666655
Q ss_pred hhhCC
Q 008727 531 SVNHD 535 (556)
Q Consensus 531 m~~~~ 535 (556)
+-.+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 55544
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.91 E-value=63 Score=32.23 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHHHhccCCCCCch--hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 203 AKLGQVLSMLDEVRKRENSMINGS--VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
.+.+.|...+...... ....+.. ..+..+...+...+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA-QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 3667788888777654 2221111 122334444444553455666666554432 3333344444555577889888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 008727 281 EVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (556)
...|+.|...... .....--+.+++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877553221 222233455577778888888888888765
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.51 E-value=44 Score=29.79 Aligned_cols=81 Identities=16% Similarity=0.025 Sum_probs=44.2
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhc---CChhhHHHHHHHHHHcCCCCCHHHHH
Q 008727 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLWDQMFASGCSGNLKTYN 474 (556)
Q Consensus 398 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (556)
-++.....+...|.+.+++.+|...|-. |-.-|...+..++.-+... |...++--++-+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 3667777888888888888888776641 1111344555444444443 333222211111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 008727 475 ILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
.+--|.-.|+...|..+|+...
T Consensus 194 -aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 -LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCHHHHHHHHHHHH
Confidence 1223445677777777777664
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.47 E-value=16 Score=25.82 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCC
Q 008727 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (556)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 535 (556)
..+...|++++|..+.+... .||...|-.|.. .+.|..+++...+.++-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34555666666665554432 556555544422 35566666666555555544
No 272
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=75.40 E-value=26 Score=31.58 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=16.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 459 DQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
+.+.+.|..+|..+ .+...++.|+.+ +.+.+++.|-.||
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 33344554444432 222333445543 3444555555554
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.32 E-value=12 Score=34.26 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 432 (556)
..++.-|...|+.++|.+.++++....+. ...+..++..++-+.++ .+...+++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45555666666777777666666532222 22233444444443322 33455566666655544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.23 E-value=29 Score=32.82 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHH--
Q 008727 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLD--PDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNIL-- 476 (556)
Q Consensus 402 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l-- 476 (556)
+...+...|.+.|++++|.+.+.++...... --...+-.+++.+...+++..+...++++... .-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667788888888888888888888764322 23456777778888888888888888877643 112233222222
Q ss_pred --HHHHHccCCHHHHHHHHHHHHHC
Q 008727 477 --ISKFSEVGEIEGALRLFHNMLEK 499 (556)
Q Consensus 477 --i~~~~~~g~~~~A~~~~~~m~~~ 499 (556)
.-.+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22234567788877777776543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.10 E-value=35 Score=27.99 Aligned_cols=53 Identities=6% Similarity=-0.026 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCcc
Q 008727 135 TQKAFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 187 (556)
..++.++|..|...|+-. -+..|......+...|++.+|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344444444444333221 22234444444444455555555555544444444
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.89 E-value=29 Score=26.98 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC
Q 008727 138 AFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (556)
Q Consensus 138 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 188 (556)
+.++|..|...|+-. -+..|..-...+...|++.+|.++|+.-++.+..|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 666666666555432 333566666666666777777777776666665554
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.40 E-value=55 Score=29.48 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=65.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHh------CCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSD-ELVEVYKVLSA------NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 426 (556)
+-+.+.++++|......++..+.....-+ .=..+.+.+.+ ....-|+.....+...|.+.+++.+|...|-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-- 160 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-- 160 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--
Confidence 44444555555555555555554443211 11112222211 1133467777888888888899888887773
Q ss_pred HHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008727 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 427 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 498 (556)
.|-.+....|..++.-+...+...++--++ -.+ +--|.-.++...|..+++...+
T Consensus 161 --lg~~~s~~~~a~mL~ew~~~~~~~e~dlfi--------------aRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 161 --LGTKESPEVLARMEYEWYKQDESHTAPLYC--------------ARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --TSCTTHHHHHHHHHHHHHHTSCGGGHHHHH--------------HHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hcCCchHHHHHHHHHHHHHhcCCccHHHHH--------------HHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 243444466655555554444322222221 222 2235556778888777666553
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.77 E-value=63 Score=29.48 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCC
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE--IEGALRLFHNMLEKGV 501 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 501 (556)
...++.=|...++.++|.+.++++..-.+ -...+...+..++-+.++ .+...+++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 45566666777777777777777652111 112233444444444332 3445666666665543
No 279
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.58 E-value=11 Score=29.22 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=37.8
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 495 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..++-..|+.+...|+|
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566665443 2334555555555566777777777776666666666666777777764
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=68.71 E-value=18 Score=32.33 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 008727 369 SNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (556)
Q Consensus 369 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 432 (556)
..++.-|...|+.++|.+.++++....+. ...+..++..++-+.++ .+.+..++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 34555566667777777766666432111 12233333344433322 33445566666555443
No 281
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.95 E-value=11 Score=28.79 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=33.4
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..++-.-++.+.+.|+|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 444565544332 23445555444 4555666666666666666666666666666666654
No 282
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.20 E-value=14 Score=28.89 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=34.1
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
+.+.|+++... -..++..+...+..-.|.++++.+.+.++..+..++-..|+.+...|+|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44556654332 3344555555555556777777776666666666666666777776664
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.67 E-value=24 Score=34.01 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHh
Q 008727 86 SYHSILKSLSLSRQINAIDSVLKQV 110 (556)
Q Consensus 86 ~~~~ll~~~~~~~~~~~a~~~~~~~ 110 (556)
.+|.+++.|...+.+++|..+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444445555555555555544443
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.35 E-value=35 Score=24.16 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.6
Q ss_pred hcCCHHHHHHH
Q 008727 412 TSGRLREAYGV 422 (556)
Q Consensus 412 ~~~~~~~a~~~ 422 (556)
..|++++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T 2uwj_G 51 NQGRYQEALAF 61 (115)
T ss_dssp HTTCHHHHHGG
T ss_pred cchhHHHHHHh
Confidence 34444444433
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.15 E-value=38 Score=24.07 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=6.7
Q ss_pred HHhcCCHHHHHHHHH
Q 008727 410 LCTSGRLREAYGVIQ 424 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~ 424 (556)
+...|++++|..+.+
T Consensus 50 LmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 50 LMNRGDYASALQQGN 64 (116)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHcchhHHHHHHhcC
Confidence 334444444444433
No 286
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=62.71 E-value=14 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=32.5
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..++-.-|+.+...|+|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 444555544332 23444444444 4445666666666666555555555556666666653
No 287
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=62.49 E-value=71 Score=28.62 Aligned_cols=147 Identities=11% Similarity=0.073 Sum_probs=69.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhhc
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF--YNSLMEACCRE 448 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~ 448 (556)
..+..|+.+-+..++++ .|..++ ....+.+..+... +.......+.+-+.+.|..++... -.+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 34566777655555432 233222 2222333333222 222223344455567776665321 12234455566
Q ss_pred CChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 008727 449 DLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (556)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (556)
|..+.+..+++. .|..++ ..-++.|.. -++.|+.+ +.+.+++.|..+|..+ .+...++.|+.+-
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~i-- 316 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHSL-- 316 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHHH--
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHHH--
Confidence 776655554432 233322 222233333 34567654 4555667788887765 3333456677653
Q ss_pred HHHHHhhhCCCccc
Q 008727 526 EVFNKSVNHDVMLA 539 (556)
Q Consensus 526 ~~~~~m~~~~~~~~ 539 (556)
++-+++.|-.|+
T Consensus 317 --v~~Ll~~GA~~d 328 (337)
T 4g8k_A 317 --VKVLLSHGAKED 328 (337)
T ss_dssp --HHHHHHTTCCC-
T ss_pred --HHHHHHCcCCCC
Confidence 444555554443
No 288
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=62.21 E-value=88 Score=28.33 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 008727 264 YRIVAEEFKLMGSVFEREVVLKKK 287 (556)
Q Consensus 264 ~~~ll~~~~~~~~~~~a~~~~~~~ 287 (556)
...++.-|...|+.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445666676777777776666665
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.58 E-value=36 Score=25.61 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 008727 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE--IEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (556)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 515 (556)
...++.-|...|+.++|.+.++++..-. --...+...+..++-+.++ .+.+..++..+...|+-+ -..+..|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is----~~q~~~Gf 84 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC----HHHHHHHH
Confidence 4667778888888888888888875211 1112334445555555432 355667777776665432 22333333
Q ss_pred HccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 516 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
.+ ..+.++.+ ..++.-....+..++..+...|.
T Consensus 85 ~~------v~~~l~Dl-~lDiP~a~~~l~~~v~~ai~~g~ 117 (129)
T 2nsz_A 85 ER------IYNEIPDI-NLDVPHSYSVLERFVEECFQAGI 117 (129)
T ss_dssp HH------HHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTC
T ss_pred HH------HHhhChHh-hcCccchHHHHHHHHHHHHHCCC
Confidence 22 22333322 22444455566666666665554
No 290
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.62 E-value=14 Score=28.66 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=31.2
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 496 MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 496 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
+.+.|+++... -..++..+...+ .-.|.++++.+.+.++..+..++-.-|+.+...|+|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34445554433 223344444444 445666666666666555555555555666666653
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.89 E-value=51 Score=27.58 Aligned_cols=20 Identities=0% Similarity=0.032 Sum_probs=8.9
Q ss_pred HhccCCHHHHHHHHHHHhhC
Q 008727 236 FCKGKRVEEAFKVLDELRIR 255 (556)
Q Consensus 236 ~~~~~~~~~A~~~~~~m~~~ 255 (556)
.+..|+.+.+..+++.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 34445554444444443333
No 292
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.17 E-value=18 Score=28.68 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=31.5
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhhC--CCcccHHHHHHHHHHHhhhhcC
Q 008727 498 EKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH--DVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 498 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
+.|+++... -..++..+...+..-.|.++++.+.+. ++..+..++-.-|+.+...|+|
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345554332 334455555555555666666666555 5555555555555666666653
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.54 E-value=12 Score=31.63 Aligned_cols=19 Identities=11% Similarity=-0.146 Sum_probs=9.2
Q ss_pred HHHccCCHHHHHHHHHHhh
Q 008727 514 GLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m~ 532 (556)
...+.|+.+-+.-+++...
T Consensus 216 ~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC-
T ss_pred HHHHcCcHHHHHHHHHhhh
Confidence 3345566555555554433
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.80 E-value=70 Score=24.86 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 008727 244 EAFKVLDELRIRECKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR 295 (556)
Q Consensus 244 ~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (556)
++.++|..|..+|+-- -+.-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3667777777665433 334566666666677777777777777777666664
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.47 E-value=8.1 Score=33.40 Aligned_cols=188 Identities=9% Similarity=0.062 Sum_probs=84.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CC
Q 008727 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST-------LSNLSKNLC--KRNKSDELVEVYKVLSAND---------YF 397 (556)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~ 397 (556)
.+..+...|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34444455555555555555555554444222 123332221 4566666666665543211 10
Q ss_pred -ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH----------------HHHHHHHHhhcCChhhHHHHHHH
Q 008727 398 -TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF----------------YNSLMEACCREDLLRPAKKLWDQ 460 (556)
Q Consensus 398 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~ 460 (556)
.|..-++.|.. .+..|+.+- .+.+.+.|..++... -.+.+...+..|+.+- .+.
T Consensus 88 ~~d~~g~t~L~~-A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~----v~~ 158 (260)
T 3jxi_A 88 DVYYRGQTALHI-AIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI----VHY 158 (260)
T ss_dssp CSSEESBCHHHH-HHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH----HHH
T ss_pred ccccCCCCHHHH-HHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH----HHH
Confidence 01122233333 344566553 344445565555432 2233444455666444 344
Q ss_pred HHH---cCCCCC---HHHHHHHHHHHHccC-C---HHHHHHHHHHHHHCCCCC----------CHhhHHHHHHHHHccCC
Q 008727 461 MFA---SGCSGN---LKTYNILISKFSEVG-E---IEGALRLFHNMLEKGVAP----------DATTYTSLLEGLCQETN 520 (556)
Q Consensus 461 ~~~---~~~~~~---~~~~~~li~~~~~~g-~---~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~ 520 (556)
+.+ .|..++ ..-.+.|..+..... . .+...++++.+.+.|..+ |..-.+.| ...++.|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTC
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCC
Confidence 444 444443 223344444443222 1 222234555555544322 33333333 33456788
Q ss_pred HHHHHHHHHHhhh
Q 008727 521 LQAAFEVFNKSVN 533 (556)
Q Consensus 521 ~~~a~~~~~~m~~ 533 (556)
.+-+.-++++-..
T Consensus 238 ~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 238 IGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC
Confidence 7777777776543
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.34 E-value=30 Score=27.34 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 259 (556)
...|......+-..|++.+|.++|..-.+.+.+|
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3334444444444444444444444444444333
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.95 E-value=59 Score=30.52 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHh--HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHh
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSV--YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLAS 166 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 166 (556)
+...+..|+.+-+..+++ .|..++... ....+...+..|+.+-+..+++. |..++.. .-.+.+...+.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHH
Confidence 445556666665544443 343332211 11223334455665544444432 3222211 11223444455
Q ss_pred cCCHhHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhhCcHHHHHHHHH
Q 008727 167 DGYIDNALKMFDEMSHRGVEFST---IGFGVFIWKFCENAKLGQVLSMLD 213 (556)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~ 213 (556)
.|+.+-+.-+++ .|..++. .-. ..+...+..|+.+.+..+++
T Consensus 90 ~g~~~~v~~Ll~----~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 90 IGHTNMVKLLLE----NNANPNLATTAGH-TPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HTCHHHHHHHHH----HTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHHh----CCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHh
Confidence 666554444333 3333221 111 22334556666666555554
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.74 E-value=77 Score=25.01 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC
Q 008727 138 AFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (556)
Q Consensus 138 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 188 (556)
+.++|..|...|+-. -+..|..-...+-..|++.+|.++|..-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 444444444443322 222444444445555555555555555555544443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.53 E-value=66 Score=25.02 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 432 (556)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345666677777777777777776532111 22334444444444322 34556666666665544
No 300
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.26 E-value=1.4e+02 Score=27.74 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=53.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHH-
Q 008727 231 LIIHGFCKGKRVEEAFKVLDELRIR--ECKPD---FIAYRIVAEEFKLMGSVFEREVVLKKKRKL--GVAPRTNDYREF- 302 (556)
Q Consensus 231 ~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 302 (556)
-++..|...|++.+|.+++..+.+. ..... ...|..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4677888888888888888777652 11111 123555566677888888888888776543 222333222111
Q ss_pred -H--HHHH-hcCCHHHHHHHHHHH
Q 008727 303 -I--LGLI-VERRICEAKELGEVI 322 (556)
Q Consensus 303 -l--~~~~-~~~~~~~a~~~~~~~ 322 (556)
. ..+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 1334 567777776665444
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.47 E-value=72 Score=23.95 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 008727 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR--LREAYGVIQEMKRKGLD 432 (556)
Q Consensus 368 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~ 432 (556)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345566677777777777777776532111 22334444444444332 34566667666666544
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.07 E-value=38 Score=26.42 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 008727 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE--IEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (556)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 514 (556)
....++.-|...|+.++|.+.++++..-. --...+...+..++-+.++ .+.+..++..+...|+-+ -..+..+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is----~~q~~~G 85 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC----HHHHHHH
Confidence 35677788888888888888888875211 1112334445555555332 345667777776665432 2333333
Q ss_pred HHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 515 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+.+ ..+.+..+ ..++.-....+..++..+...|.
T Consensus 86 f~~------vl~~ldDl-~lDiP~A~~~la~~v~~ai~~g~ 119 (152)
T 2ion_A 86 YER------IYNEIPDI-NLDVPHSYSVLERFVEECFQAGI 119 (152)
T ss_dssp HHH------HHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTC
T ss_pred HHH------HHHhChHh-ccCccchHHHHHHHHHHHHHCCC
Confidence 322 22222222 22344445555556655555543
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.74 E-value=28 Score=28.22 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCC
Q 008727 421 GVIQEMKRKGLDP 433 (556)
Q Consensus 421 ~~~~~m~~~~~~p 433 (556)
++.+.+.+.|..+
T Consensus 159 ~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 159 DIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCC
Confidence 3344444444433
No 304
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.74 E-value=14 Score=28.30 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhcC
Q 008727 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVLI 556 (556)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 556 (556)
.++..+...+..-.|.++++.+.+.++..+..++-..|+.+...|+|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444444444455666666665555555555555555666666554
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.14 E-value=40 Score=28.17 Aligned_cols=12 Identities=8% Similarity=-0.205 Sum_probs=5.7
Q ss_pred HHhcCCHHHHHH
Q 008727 271 FKLMGSVFEREV 282 (556)
Q Consensus 271 ~~~~~~~~~a~~ 282 (556)
.++.|+.+....
T Consensus 16 A~~~g~~~~~~~ 27 (240)
T 3eu9_A 16 ATQYGIYERCRE 27 (240)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCChHHHHH
Confidence 345566544333
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.82 E-value=69 Score=27.16 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 405 VMVSFLCTSGRLREAYGVIQEMKRK--GLDP----DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 405 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3477788889999999998876542 2221 112222333333333333444455555532 456666777778
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 008727 479 KFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~ 498 (556)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 88888888888888877764
No 307
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.34 E-value=15 Score=27.86 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=21.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhCCCcccHHHHHHHHHHHhhhhc
Q 008727 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+..+...+..-.|.++++.+.+.++..+..++-..++.+...|+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333334444455555555555544444444445555555554
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.67 E-value=82 Score=24.75 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=30.2
Q ss_pred cCChhHHHHHHHHhHhCCCCC--CHHhHHHHHH-H-----HHcCCChHHHHHHHHHHH
Q 008727 97 SRQINAIDSVLKQVKVNKITL--DSSVYRFIIP-S-----LIQGKNTQKAFSVFNEVK 146 (556)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~ 146 (556)
.|++-++.++++..-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 378888888888777654344 3445555555 2 224566666666666553
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.74 E-value=38 Score=27.43 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.9
Q ss_pred HhcCChhHHHHHH
Q 008727 95 SLSRQINAIDSVL 107 (556)
Q Consensus 95 ~~~~~~~~a~~~~ 107 (556)
+..|+.+.+..++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445544444444
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.47 E-value=1.1e+02 Score=24.82 Aligned_cols=168 Identities=13% Similarity=-0.006 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008727 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (556)
Q Consensus 364 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 443 (556)
+..+-...+..+.+.|..+....+.+ +... ++..+-...+.++...+..+ +...+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 34444444444555554332222222 2221 34445555555555555432 2333333332 245555555666
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 008727 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (556)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 523 (556)
++.+.++.+. ...+..+.+ .++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.|. .+
T Consensus 104 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 6666665433 333333332 455555555666666666533 3444444432 2455555666666666665 44
Q ss_pred HHHHHHHhhhCCCcccHHHHHHHHHHHh
Q 008727 524 AFEVFNKSVNHDVMLARSILSTFMISLC 551 (556)
Q Consensus 524 a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 551 (556)
+...+.++.+. ++..+-...+.+++
T Consensus 175 ~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 175 VRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 55555555442 23334444444443
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.37 E-value=2e+02 Score=27.72 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=44.3
Q ss_pred hHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-ccCh--hhHH-HHHHHHHhhCcHHHHHHHHHHHHhc
Q 008727 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGV-EFST--IGFG-VFIWKFCENAKLGQVLSMLDEVRKR 218 (556)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~-~li~~~~~~g~~~~a~~~~~~~~~~ 218 (556)
...+|.+++.|...+.++.|..+.....--.. .++. .+|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45789999999999999999999998742100 1111 2222 2344566678888998888887654
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.20 E-value=1.6e+02 Score=26.16 Aligned_cols=74 Identities=8% Similarity=0.199 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC--HHHHHHHHHHhhhCCCcccHHHHHHH
Q 008727 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN--LQAAFEVFNKSVNHDVMLARSILSTF 546 (556)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l 546 (556)
..+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.++.+...+...+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3467888899999999999999998521111 12334444555555433 45677888888777776666654443
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.67 E-value=14 Score=31.94 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=9.3
Q ss_pred HHccCCHHHHHHHHHHHH
Q 008727 480 FSEVGEIEGALRLFHNML 497 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~ 497 (556)
.++.|+.+-+..++++-.
T Consensus 232 A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 344566555555555443
No 314
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.53 E-value=1.1e+02 Score=23.99 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 008727 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (556)
Q Consensus 415 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (556)
..+.+..++..+.+.|+--|...-...++.....| .....+-.++...|+.++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 45566677777777777644444455555555433 345666777777776543
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.27 E-value=42 Score=26.48 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHcCC
Q 008727 71 FNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN--KITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 71 f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 133 (556)
+....++.|++.++. -..++..+...+..-.|.++++.+.+. +...+..|-..-++.+.+.|
T Consensus 20 ~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 20 FKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 333334445555442 234455555555555555566555554 43344444444444444444
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.15 E-value=1.1e+02 Score=25.66 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccCh
Q 008727 136 QKAFSVFNEVKFNCEDI-GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189 (556)
Q Consensus 136 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 189 (556)
+.+.++|..|...|+-. -+..|......+...|++.+|.++|+.-++.+..|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 46778888887776543 3446777888888888888888888888887777644
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.98 E-value=1e+02 Score=26.07 Aligned_cols=89 Identities=9% Similarity=0.015 Sum_probs=46.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhC--CCCC----CHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVN--KITL----DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV 163 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 163 (556)
-++.+...+++++|.+++++..+. +.+. ........+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 477888899999999988876542 1221 111122222322232223333333333422 3345555555666
Q ss_pred HHhcCCHhHHHHHHHHHH
Q 008727 164 LASDGYIDNALKMFDEMS 181 (556)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~ 181 (556)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666677777766665543
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.26 E-value=73 Score=27.79 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCCCCHH
Q 008727 456 KLWDQMFASGCSGNLK 471 (556)
Q Consensus 456 ~~~~~~~~~~~~~~~~ 471 (556)
++.+.+.+.|..++..
T Consensus 209 ~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 209 EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHTTSCBCSTTT
T ss_pred HHHHHHHHcCCCCCCC
Confidence 3444455556555544
No 319
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.74 E-value=1.3e+02 Score=24.88 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCC
Q 008727 91 LKSLSLSRQINAIDSVLKQVKVNK 114 (556)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~ 114 (556)
+...++.|+.+.+..+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334444555555555555444444
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.51 E-value=1.2e+02 Score=23.87 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=34.3
Q ss_pred cCCChHHHHHHHHHHHhCCCCC--ChHhHHHHHH-H-----HHhcCCHhHHHHHHHHHHh
Q 008727 131 QGKNTQKAFSVFNEVKFNCEDI--GPEICNSLLA-V-----LASDGYIDNALKMFDEMSH 182 (556)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 182 (556)
..|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888886654444 4456666666 2 2346777777777777644
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.79 E-value=68 Score=24.62 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=20.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.++..+...+..-.|.++++.+.+.+...+..|-...+..+.+.|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444444445555555554443334444444444444443
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.64 E-value=71 Score=24.55 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=26.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
++.|+++++. -..++..+...+ .-.|.++++.+.+.+...+..|-..-++.+.+.|
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555442 223444444444 4456666666655554444444444444444444
No 323
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.53 E-value=1.8e+02 Score=27.14 Aligned_cols=362 Identities=9% Similarity=0.049 Sum_probs=157.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChH--hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccChh--hHHHHHHHHH
Q 008727 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE--ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTI--GFGVFIWKFC 200 (556)
Q Consensus 125 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 200 (556)
.+...+..|+.+-+..++ +.|..++.. ...+.+...+..|+.+-+.-+++. |..++.. .-...+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHH
Confidence 344455667766555444 445554432 223445556677777666555543 3332211 1112344566
Q ss_pred hhCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008727 201 ENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER 280 (556)
Q Consensus 201 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 280 (556)
..|+.+-+.-+++.-... ...+..-.+ .+...+..|+.+-+..+++.-..... .+...++ .+...+..|+.+-
T Consensus 89 ~~g~~~~v~~Ll~~ga~~---~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~~- 161 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANP---NLATTAGHT-PLHIAAREGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVRV- 161 (437)
T ss_dssp HHTCHHHHHHHHHHTCCT---TCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHHH-
T ss_pred HCCCHHHHHHHHhCCCCC---CCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHHH-
Confidence 777776655555432111 111111112 23445566777665555543211111 1211222 2333445666553
Q ss_pred HHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhcCChhHHHHHHHH
Q 008727 281 EVVLKKKRKLGVAPRTND--YREFILGLIVERRICEAKELGEVIVSGKFTIDD---DVLNALIGSVSSIDPRSAIVFFNF 355 (556)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~a~~~~~~ 355 (556)
++.+.+.|..++... -...+...+..|+.+-+ +.+.+.+..++. .-.+.+..+...++.+ +++.
T Consensus 162 ---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~ 230 (437)
T 1n11_A 162 ---AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE----VARS 230 (437)
T ss_dssp ---HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHH----HHHH
T ss_pred ---HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHH
Confidence 344445555544321 11233444455665433 334444433322 2234455555556544 3444
Q ss_pred HHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008727 356 MIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (556)
Q Consensus 356 ~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 430 (556)
+.+.|..++... -.+.+...+..|+.+-+..++ +.+..++ ....+.+. ..+..|..+-+ +.+.+.|
T Consensus 231 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g 301 (437)
T 1n11_A 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL----SKQANGNLGNKSGLTPLH-LVAQEGHVPVA----DVLIKHG 301 (437)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCCHHH-HHHHHTCHHHH----HHHHHHT
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhCC
Confidence 445554433211 112233345566665444333 3343322 11222332 33455665433 3344445
Q ss_pred CCCCHh---HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 008727 431 LDPDVS---FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK---TYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (556)
Q Consensus 431 ~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 504 (556)
..++.. ..+ .+...+..|+.+-+. .+.+.|..++.. -++.|. ..+..|+.+ +.+.+.+.|..|+
T Consensus 302 ~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 302 VMVDATTRMGYT-PLHVASHYGNIKLVK----FLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp CCTTCCCSSCCC-HHHHHHHSSCSHHHH----HHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCSC
T ss_pred ccCCCCCCCCCC-HHHHHHHcCcHHHHH----HHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCCCC
Confidence 444322 222 233444566655443 344445444322 223333 334556653 4555566677665
Q ss_pred Hhh--HHHHHHHHHccCCHHHHHHHHHHhh
Q 008727 505 ATT--YTSLLEGLCQETNLQAAFEVFNKSV 532 (556)
Q Consensus 505 ~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 532 (556)
... -.+-+....+.|. .+..++++...
T Consensus 372 ~~~~~g~t~l~~A~~~g~-~~~~~~l~~~~ 400 (437)
T 1n11_A 372 EVSSDGTTPLAIAKRLGY-ISVTDVLKVVT 400 (437)
T ss_dssp CCCSSSCCHHHHHHHTTC-HHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHcCc-HHHHHHHHhcc
Confidence 431 1112223344454 44556665543
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.50 E-value=43 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 008727 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP 259 (556)
Q Consensus 226 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 259 (556)
...|......+-..|++.+|.++|+.-.+.+-+|
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444444444455555555554444443333
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.17 E-value=1.3e+02 Score=26.00 Aligned_cols=139 Identities=7% Similarity=-0.021 Sum_probs=65.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCccHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhhcC
Q 008727 374 NLCKRNKSDELVEVYKVLSANDYFTDME---SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS-FYNSLMEACCRED 449 (556)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~ 449 (556)
..+..|+.+-+..+++. |..++.. -+...+...+..|+.+- .+.+.+.|..+... .-.+.+...+..|
T Consensus 101 ~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g 172 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNG 172 (285)
T ss_dssp HHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcC
Confidence 34456666655544443 3333322 22233444455666543 34444445433211 2334445556677
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
+.+-+..+++.-..... .|..-++..+...+..|+. ++.+.+.+.|..|+..... -...|+.+-+.-+++
T Consensus 173 ~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 173 HVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIE 242 (285)
T ss_dssp CHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHH
Confidence 77766666655333221 1111122223334445654 4555666778777766421 134566555555554
Q ss_pred H
Q 008727 530 K 530 (556)
Q Consensus 530 ~ 530 (556)
.
T Consensus 243 ~ 243 (285)
T 3kea_A 243 K 243 (285)
T ss_dssp H
T ss_pred c
Confidence 3
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.44 E-value=1e+02 Score=24.75 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhh-cCChhhHHHHHHHHHHcCCCCCHHH---HHHHHHHHHc
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDVS---FYNSLMEACCR-EDLLRPAKKLWDQMFASGCSGNLKT---YNILISKFSE 482 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~ 482 (556)
.+..|+.+.-.++.+-+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++... .++.+...+.
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~ 124 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH
Confidence 344555555555666666666655532 12222222211 2223344566666666665554321 1012222222
Q ss_pred cCCH-HHHHHHHHHHHH-CCCCCCH
Q 008727 483 VGEI-EGALRLFHNMLE-KGVAPDA 505 (556)
Q Consensus 483 ~g~~-~~A~~~~~~m~~-~g~~p~~ 505 (556)
.|.. ..-..+++.+++ .|..++.
T Consensus 125 ~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 125 YFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp CCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred cCCChhhHHHHHHHHHHhcCCCCcc
Confidence 2322 334556666666 6665543
No 327
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=39.32 E-value=1.7e+02 Score=24.45 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCH
Q 008727 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDV 435 (556)
Q Consensus 357 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~ 435 (556)
+..|...+...+..+...... ..|....-.+..... .+-.-|-.-+.+.| ..+.+..++..+.+.|+--|.
T Consensus 40 L~kg~el~~e~~~~i~~~~~~----~~a~~~Al~~Ls~r~----~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~ 111 (221)
T 3d5l_A 40 LMKGTELDEKQIAAIATADQQ----AKAYSRMLDYLSYQM----RTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDH 111 (221)
T ss_dssp CCTTCEECHHHHHHHHHHHHH----HHHHHHHHHHHTTSC----CCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred CcCCCCCCHHHHHHHHHhHHH----HHHHHHHHHHhcccc----ccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 344555666666665543322 222222222222211 12333444444444 445666778888888877454
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHH
Q 008727 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDATTYTSLLEG 514 (556)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~ 514 (556)
..-...++...+.+. .....+-.++...|+.++.. ...+..+......+.|..++++-..... .++.....-++..
T Consensus 112 rfA~~~v~~~~~~~~-~G~~~I~~eL~~KGI~~~~I--~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~ 188 (221)
T 3d5l_A 112 AYAASYVRTMINTDL-KGPGIIRQHLRQKGIGESDI--DDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQG 188 (221)
T ss_dssp HHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCCHHHH--HHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-ccHHHHHHHHHHcCCCHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHH
Confidence 444455555544222 24566777777777654332 1111111001112334455544432211 1223335566666
Q ss_pred HHccCC-HHHHHHHHH
Q 008727 515 LCQETN-LQAAFEVFN 529 (556)
Q Consensus 515 ~~~~g~-~~~a~~~~~ 529 (556)
+.+.|- ++.+..+++
T Consensus 189 L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 189 LTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHTTCCHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHH
Confidence 666663 344444443
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.77 E-value=2.9e+02 Score=26.12 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC-----hhhHHHHHHHHHHcC
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-----LRPAKKLWDQMFASG 465 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 465 (556)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457899999999999999887765555555555544443 233444555555555
No 329
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.83 E-value=1.8e+02 Score=23.36 Aligned_cols=122 Identities=15% Similarity=0.033 Sum_probs=67.5
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008727 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (556)
Q Consensus 399 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (556)
+..+-...+.++...+..+ +...+..+.. .++...-...+.++.+.++.+.. ..+..+.+ .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 4445555555666655543 3333333333 35666666667777777765433 33333433 456666666667
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHhhh
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
++.+.|+. ++...+..+.. .++...-...+.++.+.|. +++...+..+.+
T Consensus 130 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 130 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 77766654 34444444443 2466666677777777776 445556655554
No 330
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=33.90 E-value=1.2e+02 Score=21.29 Aligned_cols=33 Identities=3% Similarity=0.141 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCC
Q 008727 102 AIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (556)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 134 (556)
.+.++.+++...|+.|+..+...+++.|...+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 355566666666777777777777777666553
No 331
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.53 E-value=2e+02 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008727 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPT 364 (556)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (556)
.++++......|++.|+-.+-+|++.| .|.
T Consensus 18 iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~ 47 (204)
T 2r9g_A 18 ISAFQKSIRGSDVDAALHYLARLVEAG-DLA 47 (204)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-CHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CHH
Confidence 344455555667888888888888887 443
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.34 E-value=2.1e+02 Score=23.74 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhCCCCCChH-------hHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008727 135 TQKAFSVFNEVKFNCEDIGPE-------ICNSLLAVLASDGYIDNALKMFDEMSHR 183 (556)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (556)
++.|+.+|+.+.+.-.-++.. .-...+..|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776542111111 1223455667777777777777776654
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.15 E-value=78 Score=26.20 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=9.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008727 268 AEEFKLMGSVFEREVVLKK 286 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~ 286 (556)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334455555555555443
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.00 E-value=1.3e+02 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=7.3
Q ss_pred CHhHHHHHHHHHHhCC
Q 008727 169 YIDNALKMFDEMSHRG 184 (556)
Q Consensus 169 ~~~~a~~~~~~m~~~~ 184 (556)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3344445555444443
No 335
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.18 E-value=1.8e+02 Score=23.22 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CC---------------HHHH
Q 008727 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCS--GN---------------LKTY 473 (556)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~---------------~~~~ 473 (556)
.-.|.+..++-++...- ..+..-|..| +|-+..++..|...++.+.+..+. || ...|
T Consensus 44 yyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 34677777766654221 1112223322 556778888888888888855443 22 2234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 008727 474 NILISKFSEVGEIEGALRLFHNML 497 (556)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~m~ 497 (556)
+.+...+...|+.++|+..+..--
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhc
Confidence 455555555566666665555544
No 336
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.80 E-value=2.1e+02 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST 367 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (556)
++++......|++.|+-.+-+|++.|-.|....
T Consensus 12 SAf~KSiRGSDpDAAly~LaRMl~~GEDp~~Ia 44 (201)
T 3bge_A 12 SALHKSVRGSAPDAALYWYARILTAGGDPLYVA 44 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 344445556678888888888887776554333
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.77 E-value=73 Score=28.96 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=7.3
Q ss_pred HHhcCChHHHHHHHH
Q 008727 375 LCKRNKSDELVEVYK 389 (556)
Q Consensus 375 ~~~~g~~~~a~~~~~ 389 (556)
.+..|+.+-+..+++
T Consensus 180 A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 180 AMEFRNREALDLMMD 194 (364)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344555554444444
No 338
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.83 E-value=41 Score=29.05 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=11.1
Q ss_pred HHhccCCHHHHHHHHHHHhhCC
Q 008727 235 GFCKGKRVEEAFKVLDELRIRE 256 (556)
Q Consensus 235 ~~~~~~~~~~A~~~~~~m~~~~ 256 (556)
..++.|+.+.+..+++...+.+
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHhhcc
Confidence 3345555555555555544443
No 339
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=30.78 E-value=83 Score=28.64 Aligned_cols=58 Identities=5% Similarity=0.092 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHcCCChHHHHHHHHHH
Q 008727 88 HSILKSLSLSRQINAIDSVLKQVKVNKITL-DSSVYRFIIPSLIQGKNTQKAFSVFNEV 145 (556)
Q Consensus 88 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 145 (556)
..+++.....+..++...+|+++...-+.. ....-+.++..+...+..+.-..+++.+
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i 96 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRI 96 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHH
Confidence 345666667777777778888776642111 1112244555555555555555555554
No 340
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.73 E-value=1.8e+02 Score=23.24 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 008727 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
..+....+++.+.+.|+--|...-...+....+.|.+.. ..+-.++.++|+ +..+....+..+......+.|..+++
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KGI--~~~~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKGI--DDNIAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTTC--CHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcCC--CHHHHHHHHHhCCchhHHHHHHHHHH
Q ss_pred HhhhC-CCcccHHHHHHHHHHHhhhhc
Q 008727 530 KSVNH-DVMLARSILSTFMISLCRRVL 555 (556)
Q Consensus 530 ~m~~~-~~~~~~~~~~~l~~~~~~~~~ 555 (556)
+-... ...++......++..+.+.|+
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF 151 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGF 151 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCC
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.40 E-value=1.4e+02 Score=24.66 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=46.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---------CHhhHHH
Q 008727 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKT--YNILISKFSEVGEIEGALRLFHNMLEKGVAP---------DATTYTS 510 (556)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~~~~~ 510 (556)
+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+ |..-.+.
T Consensus 125 L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 125 LSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred HHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 3334445555433 33444554443211 1123445567788888878888888876543 2333333
Q ss_pred HHHHHHccCCHHHHHHHHHHhhh
Q 008727 511 LLEGLCQETNLQAAFEVFNKSVN 533 (556)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~m~~ 533 (556)
+...++.|+.+-+.-+++.-..
T Consensus 201 -l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 -FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhcCcc
Confidence 3344566777766666665433
No 342
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=30.18 E-value=2e+02 Score=22.54 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 008727 104 DSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (556)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (556)
..+-.++.+.|+ +..+....+..+ .....+.|..++++-.......+.....-++..+.+.|-
T Consensus 85 ~~I~~eL~~KGI--~~~~I~~al~~~-~~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF 147 (162)
T 3dfg_A 85 LHIRAELGTHGL--DSDAVSAAMATF-EGDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGF 147 (162)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHTTC-CSCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHhC-cHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 456667777775 333333333222 112233444444432111112233344445555555543
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.90 E-value=85 Score=23.50 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=22.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
++..+...+..-.|.++++.+.+.+...+..|-...++.+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444444445555556666555544444444444445555444
No 344
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.39 E-value=50 Score=28.50 Aligned_cols=18 Identities=0% Similarity=-0.012 Sum_probs=10.8
Q ss_pred HHHHccCCHHHHHHHHHH
Q 008727 513 EGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~ 530 (556)
...++.|..+-+.-+++.
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHC
Confidence 334567777666665554
No 345
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.07 E-value=2.2e+02 Score=22.68 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=32.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCh
Q 008727 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFI---AYRIVAEEFKL-MGSVFEREVVLKKKRKLGVAPRT 296 (556)
Q Consensus 232 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 296 (556)
.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3444455566655556666666666555432 12223222221 22334445556666666655543
No 346
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.47 E-value=49 Score=20.17 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCC--HHHHHHHHHHh
Q 008727 492 LFHNMLEKGVAPDATTYTSLLEGLCQETN--LQAAFEVFNKS 531 (556)
Q Consensus 492 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m 531 (556)
.++.+++.|+.++ ....++.+.|. ++.|++++.+|
T Consensus 12 mlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 12 MLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 3445555566543 22334455555 77777777766
No 347
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.46 E-value=1.5e+02 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.4
Q ss_pred HhHHHHHHHHHHhCC
Q 008727 170 IDNALKMFDEMSHRG 184 (556)
Q Consensus 170 ~~~a~~~~~~m~~~~ 184 (556)
.-.|.++++.+.+.+
T Consensus 33 h~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 33 HISAEELYKKLIDLG 47 (150)
T ss_dssp SEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC
Confidence 333444444444433
No 348
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.26 E-value=58 Score=27.70 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHccCCHHHHHHHHHHh
Q 008727 514 GLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 514 ~~~~~g~~~~a~~~~~~m 531 (556)
..++.|..+-+.-+++.-
T Consensus 227 ~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCC
Confidence 345667776666666543
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.36 E-value=84 Score=23.89 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCC
Q 008727 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGK 133 (556)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 133 (556)
.++..+...+..-.|.++++.+.+.+...+..|-..-++.+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555555555443444444444444444444
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.05 E-value=1.5e+02 Score=26.75 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=25.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHccCCHHHHHHHHHH
Q 008727 479 KFSEVGEIEGALRLFHNMLEKGVAPDATT---YTSLLEGLCQETNLQAAFEVFNK 530 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 530 (556)
..+..|+.+ +.+.+++.|..++... .+.| ...++.|..+-+.-+++.
T Consensus 217 ~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 217 WAILINWED----VAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 345667654 4444555666554322 2333 334556777777777765
No 351
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.91 E-value=72 Score=20.02 Aligned_cols=29 Identities=28% Similarity=0.130 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 008727 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKF 199 (556)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 199 (556)
++|.+.|-+|.+..-.++.-||...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777766544334556777777665
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.79 E-value=2.2e+02 Score=21.89 Aligned_cols=59 Identities=7% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 008727 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (556)
Q Consensus 425 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (556)
.+.+.|++++. -=..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34556665433 223444555555556677777777766554445544444444444444
No 353
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=26.64 E-value=3.3e+02 Score=23.96 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=54.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHh
Q 008727 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALIGSVS 342 (556)
Q Consensus 268 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 342 (556)
+...++.|+.+....++.. .+..++.. .-.+.+...+..|+.+-+..++ +.|..++ ..-.+.+..+..
T Consensus 28 L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcHHHHHHH
Confidence 4445567888877776643 23333221 1123444555667766555444 3444332 233455666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHH
Q 008727 343 SIDPRSAIVFFNFMIEKGRVPTLS---TLSNLSKNLCKRNKSDELVEVY 388 (556)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~ 388 (556)
.|+.+ +++.+.+.|..++.. -.+ .+...+..|+.+-+..++
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 144 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVCSLLL 144 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 66644 445555666554422 122 333445667766544444
No 354
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.46 E-value=2.6e+02 Score=22.79 Aligned_cols=16 Identities=0% Similarity=-0.178 Sum_probs=7.6
Q ss_pred HhcCChHHHHHHHHHH
Q 008727 376 CKRNKSDELVEVYKVL 391 (556)
Q Consensus 376 ~~~g~~~~a~~~~~~~ 391 (556)
++.|+.+-+..+++.-
T Consensus 205 ~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcC
Confidence 3445555544444443
No 355
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=26.00 E-value=2.2e+02 Score=21.72 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=22.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHh
Q 008727 480 FSEVGEIEGALRLFHNMLEKGVAPDATTY--TSLLEGLCQETNLQAAFEVFNKS 531 (556)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m 531 (556)
.+..|+.+ +.+.+.+.|..|+.... .+.+....+.|..+-+.-+++..
T Consensus 109 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 109 AVHGNHVK----CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 34456654 33344445555432211 12233344566666555555544
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.72 E-value=3.6e+02 Score=28.60 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=34.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHhhhCC----CcccHHHHHHHHHHHhhhh
Q 008727 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHD----VMLARSILSTFMISLCRRV 554 (556)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~~ 554 (556)
-|..++.-+-+.+.++.+.++-+..++.- ......++..++++.|-.|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57888888899999999999888877532 2333456777777776544
No 357
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.30 E-value=1.5e+02 Score=26.86 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHH
Q 008727 471 KTYNILISKFSEVGEIEGALRLFHN 495 (556)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~ 495 (556)
.....++..+.+....+.+.++|.+
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3344556666666677777777774
No 358
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.93 E-value=2.9e+02 Score=22.76 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 008727 335 NALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365 (556)
Q Consensus 335 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (556)
++++......|++.|+-.+-+|++.|-.|..
T Consensus 40 SAf~KSiRGSDpDAALywLaRMl~~GEDp~~ 70 (213)
T 3ctd_A 40 SAFIKSIRGSDPDATLYWLANMVEAGEDPNF 70 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 3444445556777777777777777655443
No 359
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.85 E-value=4.4e+02 Score=24.82 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.6
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCC
Q 008727 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE-----IEGALRLFHNMLEKGV 501 (556)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~ 501 (556)
+.++.+.|...+.+|.+.|..|....-..++.+.-.-|. ..-|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888889999999888877766555555666555553 2334455555555554
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.71 E-value=3.2e+02 Score=29.01 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=62.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC------------------
Q 008727 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCED------------------ 151 (556)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 151 (556)
++..|...+..+-+.++... ++.++..--.+..+|...|++++|...|++... |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555556666555443322 122333333455666677777777777765421 110
Q ss_pred -----CChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCccC----hhhHHHHHHHHHhhC
Q 008727 152 -----IGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS----TIGFGVFIWKFCENA 203 (556)
Q Consensus 152 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g 203 (556)
....-|..++..+-+.+.++.+.++-+...+.--.-| ...|+.+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0112578899999999999999988887776321112 235677777777654
No 361
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.55 E-value=4.6e+02 Score=24.91 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCCCCCHHhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008727 113 NKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (556)
Q Consensus 113 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (556)
.|++--...|..-.+.+...|++++|.++.-..+. |.-.+..+.+.+-.+=...|...-.+..|..+.+.|
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34444455555555666666666666666555433 222355555544444444455555555555555544
No 362
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.51 E-value=3.2e+02 Score=22.68 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=11.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008727 408 SFLCTSGRLREAYGVIQEMKR 428 (556)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~ 428 (556)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345555556666555555544
No 363
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.47 E-value=3e+02 Score=22.42 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC-----hhhHHHHHHHHHHcC
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-----LRPAKKLWDQMFASG 465 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 465 (556)
+..+.+.|+-++.+|++.|..|....-..++-+.-.-|. ...|...++.....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 456777777777777777766655555555555444332 223444444444445
No 364
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.04 E-value=3.1e+02 Score=22.41 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhcCC-----hhhHHHHHHHHHHcCC
Q 008727 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-----LRPAKKLWDQMFASGC 466 (556)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 466 (556)
+..+.+.|+-++.+|.+.| .|....-..++-+.-.-|. ...|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567777787888888777 6655555555555544443 2334444555555564
No 365
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.95 E-value=1.7e+02 Score=19.35 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHHc
Q 008727 451 LRPAKKLWDQMFAS 464 (556)
Q Consensus 451 ~~~a~~~~~~~~~~ 464 (556)
.-.+.++++.+.+.
T Consensus 33 ~~s~~el~~~l~~~ 46 (83)
T 2fu4_A 33 HVSAEDLYKRLIDM 46 (83)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 34444455544443
No 366
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=22.65 E-value=2e+02 Score=20.90 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHhcCCCCCCCHHHHHHHhhhhhccChhHHHHHHH-HhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 008727 36 QTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFN-WASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVN 113 (556)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 113 (556)
...++++ ++.+.+..+-.....+-.+..+++++ |..+..+ ...+++.|+.++-+.+.-..|..+-+.+.+.
T Consensus 30 ~~aRkLG----Lse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~---~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~~~ 101 (112)
T 1ich_A 30 EFVKRLG----LSDHEIDRLELQNGRCLREAQYSMLATWRRRTPR---REATLELLGRVLRDMDLLGCLEDIEEALCGP 101 (112)
T ss_dssp HHHHHHT----CCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCC---SSCHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHcC----CCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCC---CCCcHHHHHHHHHHhccHHHHHHHHHHHhcc
Confidence 3444555 56666665554332222334444443 3333221 2236777777777777777776666665443
No 367
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.18 E-value=2.1e+02 Score=20.02 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHhHH
Q 008727 134 NTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (556)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 173 (556)
..+.|.++++.+...| +.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4566666666665553 23566666666554544433
No 368
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.06 E-value=83 Score=26.16 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 008727 479 KFSEVGEIEGALRLFHNMLE 498 (556)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~ 498 (556)
..+..|+...++++.+.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666554
No 369
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.74 E-value=1.6e+02 Score=18.46 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhhhhhccChhHHHHHHHHhhhCCCCCCC
Q 008727 45 DSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHS 83 (556)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~ 83 (556)
|.++..++..+|... .++.+.|+..+..+ ..+++.|+
T Consensus 21 P~ld~~~I~~vL~a~-~gdvd~aI~~LL~m-~~~~~~~~ 57 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQ-RGNKDAAINSLLQM-GEEPSGPS 57 (59)
T ss_dssp SSSCHHHHHHHHTTT-TTCHHHHHHHHHHS-SCCCCSCC
T ss_pred CCCCHHHHHHHHHHc-CCCHHHHHHHHHcC-cCCCCCCC
Confidence 458888888888864 56677788777766 34444444
No 370
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.43 E-value=1.9e+02 Score=25.00 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 008727 85 LSYHSILKSLSLSRQINAIDSVLK 108 (556)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~ 108 (556)
....+.++..+..|+.+.+.++..
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp ------------------------
T ss_pred hHHHHHHHHHhhcCCCCCcccCCC
Confidence 334455666667777666665443
No 371
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.27 E-value=2.3e+02 Score=23.11 Aligned_cols=173 Identities=9% Similarity=0.055 Sum_probs=81.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCccH---hhHHHHHHHHHhc
Q 008727 337 LIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM---ESYNVMVSFLCTS 413 (556)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 413 (556)
+..+...|+.+....++..-...-...+..-.+. +...+..|+.+-+..++ +.|..++. ..++.+.. .+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~-A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVEFLL----QLGVPVNDKDDAGWSPLHI-AASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHH-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHHHHH----HhCCCCCCcCCCCCCHHHH-HHHc
Confidence 4555667787777766654322111222222233 33445667766554444 44544332 23333333 3445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHH
Q 008727 414 GRLREAYGVIQEMKRKGLDPDVS---FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT--YNILISKFSEVGEIEG 488 (556)
Q Consensus 414 ~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 488 (556)
|+.+ +++.+.+.|..++.. ..+ .+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~- 153 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLK- 153 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH-
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH-
Confidence 6654 444555566555432 223 33444455665544 44445554444221 112233445566665
Q ss_pred HHHHHHHHHHCCCCCCHh---hHHHHHHHHHccCCHHHHHHHHH
Q 008727 489 ALRLFHNMLEKGVAPDAT---TYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 489 A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
+.+.+.+.|..++.. -.+ .+...++.|..+-+.-+++
T Consensus 154 ---~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 154 ---MVHILLFYKASTNIQDTEGNT-PLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp ---HHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHhcCCCccccCCCCCC-HHHHHHHCCCHHHHHHHHH
Confidence 444455566655432 223 3344456677665544444
No 372
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.16 E-value=2e+02 Score=21.87 Aligned_cols=15 Identities=0% Similarity=0.171 Sum_probs=6.9
Q ss_pred HHHhcCChhHHHHHH
Q 008727 93 SLSLSRQINAIDSVL 107 (556)
Q Consensus 93 ~~~~~~~~~~a~~~~ 107 (556)
..++.|+.+.+..++
T Consensus 14 ~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 14 EAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHH
Confidence 334455555444443
No 373
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.26 E-value=2e+02 Score=24.20 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHhhc---CChhhHHHHHHHHHHcCCC----------CC
Q 008727 410 LCTSGRLREAYGVIQEMKRKGLDPDV-------SFYNSLMEACCRE---DLLRPAKKLWDQMFASGCS----------GN 469 (556)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~----------~~ 469 (556)
.+..|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-...+.. .|
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 87 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEF 87 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTT
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccccccccc
Confidence 34556666666666666665554432 223333333 333 6666666666554432210 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh----------------hHHHHHHHHHccCCHHHHHHHHH
Q 008727 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT----------------TYTSLLEGLCQETNLQAAFEVFN 529 (556)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~ 529 (556)
..-++.|. ..+..|+.+- .+.+.+.|..++.. -.+.| ...+..|+.+-+.-+++
T Consensus 88 ~~g~t~L~-~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 88 YQGHSALH-IAIEKRSLQC----VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL-SLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTCCHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH-HHHHHTTCHHHHHHHHH
T ss_pred ccCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCcccccccccccccccccCCCCHH-HHHHHcCCHHHHHHHHh
Confidence 22233333 3345666544 34444556555433 22333 33455677766666555
Done!