BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008728
(556 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 20/276 (7%)
Query: 178 LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237
+ EI L+ G + ++ RCP+ + S V T+ + + N+ + ++ +
Sbjct: 77 VEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQF 136
Query: 238 PKILGFLTLEEMHQK---VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY- 293
P+ F T+++ + V + +E GL + RLL P++ + E+ K +V+ L
Sbjct: 137 PE--SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPV-EKNKQMVRILQE 193
Query: 294 -YLGV--SRDGMR----RMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFP 346
YL V S M+ ++L P + + T I + F Q+ G I +L K
Sbjct: 194 SYLDVGGSEANMKVWLLKLLSQNPFIL-LNSPTAIKETLEFLQEQGFTSFEILQLLSKLK 252
Query: 347 SLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGI 406
L + I+ + F ++ D+ + + P LL S+ LE ++ L GI
Sbjct: 253 GFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLLREGI 311
Query: 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVR 442
+ Q I + PM+L I + + R L + R
Sbjct: 312 SIAQ----IRETPMVLELTPQIVQYRIRKLNSSGYR 343
>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii
GN=MTERFD3 PE=2 SV=1
Length = 385
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 20/270 (7%)
Query: 178 LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237
+ EI L+ G + ++ RCP+ + V T+ + + N+ + ++ +
Sbjct: 77 VEEIANILQELGADETAVANILERCPEAIVCRPTAVNTQRKLWQLVCKNEEELIKLIEQF 136
Query: 238 PKILGFLTLEEMHQK---VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY- 293
P+ F T+++ + V + +E GL + RLL ++ + E+ K +V+ L
Sbjct: 137 PE--SFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPV-EKNKQMVRILQE 193
Query: 294 -YLGV--SRDGMR----RMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFP 346
YL V S M+ ++L P + + T I + F Q+ G I +L K
Sbjct: 194 SYLNVGGSEANMKVWLLKLLSQNPFIL-LNSPTAIKETLEFLQEQGFTSFEILQLLSKLK 252
Query: 347 SLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGI 406
L + I+ + F ++ D+ + + P LL S+ LE ++ L GI
Sbjct: 253 GFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLLREGI 311
Query: 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYL 436
+ Q I + PM+L I + + R L
Sbjct: 312 SIAQ----IRETPMVLELTPQIVQYRIRKL 337
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 159 LGVALLKT-----GGNILERSIEE--LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIE 211
LGV L K N+L R E + +I+ +L+ G+ + +G +++ + S+ +E
Sbjct: 157 LGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLE 216
Query: 212 EVKTRVHFYLDMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYL-KEFGLSTEDVGRLL 270
+KTRV + +K D MV + P +L F ++E + ++ + KE L+ + L+
Sbjct: 217 NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSF-SVERLDNRLGFFQKELELNVKKTRDLV 275
Query: 271 AFRPHLMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLE--TTIVPKVRFF 328
P L+ + + + Y LG + ++ M++ P + + T I V
Sbjct: 276 VRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNV 335
Query: 329 QDIGVRDEGIANMLVKFPSLLTYSLYK 355
+I +++VKFP L ++K
Sbjct: 336 MNIP------HHIIVKFPQLFNTRVFK 356
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 5/189 (2%)
Query: 276 LMGCGIGERWKPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRD 335
L+ + K ++ +L LG+ + + L +F DLE + +V + Q
Sbjct: 174 LLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSK 232
Query: 336 EGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLE 395
IA M+ P LL++S+ +++ + F + ++ + + P LL S+ E
Sbjct: 233 TDIARMVKNAPFLLSFSV-ERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKE 291
Query: 396 VNVKYFLSLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFS 455
Y L LG K +++ M+ P +L N + Y+ M P +++FP+ F+
Sbjct: 292 NMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFN 351
Query: 456 ---YSLEER 461
+ ++ER
Sbjct: 352 TRVFKIKER 360
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 142 IRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSR 201
I+ + +LK + ++ LG L K I +E L V YL++ + + ++
Sbjct: 183 IKQILLFLKDLGLEDNQLGPFLTKNYA-IFSEDLENLKTRVAYLQSKNFSKTDIARMVKN 241
Query: 202 CPQLLSQSIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKIL-GFLTLEEMHQKVTYLKEF 259
P LLS S+E + R+ F+ ++ +N +V P++L G L + + KV +L E
Sbjct: 242 APFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHL-EL 300
Query: 260 GLSTEDVGRLLAFRPHLMGCG 280
G ++ ++ P ++
Sbjct: 301 GFKHNEIQHMVIKIPKMLTAN 321
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 176 EELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVF 235
+++ +I+ +L+ G+ + +G +++ + S+ +E +KTRV + +K D MV
Sbjct: 178 KDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMVK 237
Query: 236 DYPKILGFLTLEEMHQKVTYL-KEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLYY 294
+ P +L F ++E + ++ + KE LS + L+ P L+ + + + Y
Sbjct: 238 NAPFLLSF-SVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLE 296
Query: 295 LGVSRDGMRRMLVIKP 310
LG + ++ M+ P
Sbjct: 297 LGFKHNEIQHMVTKIP 312
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 286 KPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKF 345
K ++ +L LG+ + + L +F DLE + +V + Q IA M+
Sbjct: 181 KQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNA 239
Query: 346 PSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLG 405
P LL++S+ +++ + F + +S + + P LL S+ E Y L LG
Sbjct: 240 PFLLSFSV-ERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG 298
Query: 406 IKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFS---YSLEER 461
K +++ M+ P +L N + Y+ M P +++FP+ F+ + ++ER
Sbjct: 299 FKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKER 357
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 125 YPKIAKLICMSGGNLES-IRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVE 183
+P +A L+ N E I+ + +LK + ++ LG L K I +E L V
Sbjct: 164 HPDVANLLLR--LNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYA-IFSEDLENLKTRVA 220
Query: 184 YLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFY---LDMGMNKNDFGTMVFDYPKI 240
YL++ + + ++ P LLS S+E + R+ F+ L++ + K +V P++
Sbjct: 221 YLQSKNFSKTDIACMVKNAPFLLSFSVERLDNRLGFFQKELELSVKKT--RDLVVRLPRL 278
Query: 241 L-GFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPHLMGCG 280
L G L + + KV Y E G ++ ++ P ++
Sbjct: 279 LTGSLEPVKENMKV-YRLELGFKHNEIQHMVTKIPKMLTAN 318
>sp|Q8BKY8|MTER3_MOUSE mTERF domain-containing protein 3, mitochondrial OS=Mus musculus
GN=Mterfd3 PE=1 SV=1
Length = 385
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 20/270 (7%)
Query: 178 LNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDY 237
+ EI L+ G + + ++ RCP+ + S V T+ + + N+ + ++ +
Sbjct: 77 VEEIANILKELGANKTVIASILERCPEAIICSPAAVNTKRKLWQMVCKNEAELVQLIEQF 136
Query: 238 PKILGFLTLEEMHQK---VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYL-- 292
P+ F T++ + V + +E GL + R L + + E K ++ L
Sbjct: 137 PE--SFFTVKNQENQKLNVQFFQELGLRNVVISRFLTTASSIFHNPV-ENNKQMIGVLQE 193
Query: 293 --YYLGVSRDGMR----RMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFP 346
LG S + ++L P + + ++ Q G D + +L K
Sbjct: 194 SYLNLGGSEANAKVWLLKLLSQNPFIV-LHSPRAVGETLKCLQGQGFTDSEVLQLLSKLK 252
Query: 347 SLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGI 406
L I+ + F T ++ D+ + + P LL C + LE ++ L GI
Sbjct: 253 GFLFQLQPGSIQNSISFTKTTFECTDYDLRQLVVKCPALL-CYPASVLEERIQALLKEGI 311
Query: 407 KLHQLGAMIADFPMLLRYNIDIFRPKYRYL 436
+ Q I + PM+L I + + R L
Sbjct: 312 SIAQ----IRESPMVLELTPQIIQYRIRKL 337
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
Query: 286 KPLVKYLYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKF 345
K ++ +L +G+ + + L +F DLE + +V + +A M+ K
Sbjct: 189 KQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKA 247
Query: 346 PSLLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLG 405
P LL +S+ +++ + F + +S + + P LL S+ E Y L LG
Sbjct: 248 PFLLNFSV-ERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG 306
Query: 406 IKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSL 458
K +++ MI P +L N + ++ M P +++FP+ F+ L
Sbjct: 307 FKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL 359
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 140 ESIRHLAEWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVM 199
+ I+ + +LK V ++ LG L K I +E L V YL + + + ++
Sbjct: 186 KDIKQMLLFLKDVGIEDNQLGAFLTKNHA-IFSEDLENLKTRVAYLHSKNFSKADVAQMV 244
Query: 200 SRCPQLLSQSIEEVKTRVHFY---LDMGMNKNDFGTMVFDYPKIL-GFLTLEEMHQKVTY 255
+ P LL+ S+E + R+ F+ L++ + K +V P++L G L + + KV Y
Sbjct: 245 RKAPFLLNFSVERLDNRLGFFQKELELSVKKT--RDLVVRLPRLLTGSLEPVKENMKV-Y 301
Query: 256 LKEFGLSTEDVGRLLAFRPHLMGCG 280
E G ++ ++ P ++
Sbjct: 302 RLELGFKHNEIQHMITRIPKMLTAN 326
>sp|Q5XIE2|MTER3_RAT mTERF domain-containing protein 3, mitochondrial OS=Rattus
norvegicus GN=Mterfd3 PE=2 SV=1
Length = 385
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 18/267 (6%)
Query: 180 EIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMVFDYPK 239
EI L+ G + + ++ RCP+ + S V T+ + + K + ++ +P+
Sbjct: 79 EIANILKELGANQTVIASILERCPEAIVCSPAAVNTKRKLWQMVCKTKTELIQLIEQFPE 138
Query: 240 ILGFLTLEEMHQK--VTYLKEFGLSTEDVGRLLAFRPHLMGCGIGERWKPLVKYLY--YL 295
F ++ +QK V + +E GL + R L + + E K ++ L YL
Sbjct: 139 SF-FAVKDQENQKLNVQFFQELGLKNVVITRFLTTASSIFHNPV-ENNKQMIGVLLESYL 196
Query: 296 GV------SRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLL 349
+ ++ + ++L P + T + ++F Q G D + +L K L
Sbjct: 197 NLGGSEANAKVWLLKLLSQNPFIV-LSSPTAVGEVLKFLQGQGFTDSEVLQLLSKLKGFL 255
Query: 350 TYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLH 409
I+ + F T ++ D+ + + P LL LE ++ L GI +
Sbjct: 256 FQLQPGSIQNSISFTKTTFECTDHDLRQLVVKCPALLYYP-APVLEERIQALLKEGISVA 314
Query: 410 QLGAMIADFPMLLRYNIDIFRPKYRYL 436
Q+ A PM+L I + + R L
Sbjct: 315 QIRAS----PMVLELTPQIIQYRIRKL 337
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 148 WLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLS 207
+LK V ++ LG L K IL +E L V YL++ + ++SR P LL
Sbjct: 182 FLKDVGIEDNQLGPFLTK-NPYILGEELEALETRVAYLKSKKFGNAEITQMVSRAPYLLL 240
Query: 208 QSIEEVKTRVHFYL-DMGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLK-EFGLSTED 265
S+E + R+ F+ ++G++ +V +P++L LE + + + + EFG +
Sbjct: 241 FSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTG-KLEPVKENLQVCQVEFGFERNE 299
Query: 266 VGRLLAFRPHLMGCGIGERWKPLVKYLY-YLGVSRDGMRRMLVIKPMVF 313
V + +AF+ + +R + YL+ +G+ + + R P VF
Sbjct: 300 VQQ-IAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRF----PQVF 343
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 292 LYYLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTY 351
L +LGV + + ++ D E I + F +D+G+ D + L K P +L
Sbjct: 147 LVHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGE 206
Query: 352 SLYKKIRPVVIFLMTKAGVSERDIGKCLALGPELLGCSIGNKLEVNVKYFLS-LGIKLHQ 410
L + + V +L +K +I + ++ P LL S+ +L+ + +F + LG+ + +
Sbjct: 207 EL-EALETRVAYLKSKK-FGNAEITQMVSRAPYLLLFSV-ERLDNRLGFFKNELGLSVKK 263
Query: 411 LGAMIADFPMLL 422
++ FP LL
Sbjct: 264 TKDLVIRFPRLL 275
>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochondrial OS=Mus musculus
GN=Mterf PE=2 SV=1
Length = 379
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 163 LLKTGGNILERSIEELNEIVEYLETNGVR------RDWMGYVMSRCPQLLSQSIEEVKTR 216
LL S+ ++VE+L+ G+ RD++ ++S+ P +L QS + VKT
Sbjct: 178 LLTNAPRTFSNSLNLNKQMVEFLQETGMSLGHNDPRDFVRKIISKNPSILIQSTKRVKTN 237
Query: 217 VHFYLD-MGMNKNDFGTMVFDYPKILGFLTLEEMHQKVTYLKE----FGLSTEDVGRLL 270
+ F +NK D ++ + L+ + + T ++E G S E+V R +
Sbjct: 238 IEFLQSTFNLNKRDLLLLICGPGARILDLSNDCTKKNYTNIRERLLSLGCSEEEVQRFV 296
>sp|P0A9S1|FUCO_ECOLI Lactaldehyde reductase OS=Escherichia coli (strain K12) GN=fucO
PE=1 SV=2
Length = 382
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 316 DLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDI 375
D+ + P ++ + I + + LT +L+ K ++ + + ++D
Sbjct: 179 DMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDA 238
Query: 376 GKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAM------IAD---FPMLLRYNI 426
G+ +ALG + G N V L G+ H LGA +A+ P ++RYN
Sbjct: 239 GEEMALGQYVAGMGFSN-----VGLGLVHGMA-HPLGAFYNTPHGVANAILLPHVMRYNA 292
Query: 427 DIFRPKYRYLRRTM 440
D KYR + R M
Sbjct: 293 DFTGEKYRDIARVM 306
>sp|P0A9S2|FUCO_ECO57 Lactaldehyde reductase OS=Escherichia coli O157:H7 GN=fucO PE=3
SV=2
Length = 382
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 316 DLETTIVPKVRFFQDIGVRDEGIANMLVKFPSLLTYSLYKKIRPVVIFLMTKAGVSERDI 375
D+ + P ++ + I + + LT +L+ K ++ + + ++D
Sbjct: 179 DMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDA 238
Query: 376 GKCLALGPELLGCSIGNKLEVNVKYFLSLGIKLHQLGAM------IAD---FPMLLRYNI 426
G+ +ALG + G N V L G+ H LGA +A+ P ++RYN
Sbjct: 239 GEEMALGQYVAGMGFSN-----VGLGLVHGMA-HPLGAFYNTPHGVANAILLPHVMRYNA 292
Query: 427 DIFRPKYRYLRRTM 440
D KYR + R M
Sbjct: 293 DFTGEKYRDIARVM 306
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 140/356 (39%), Gaps = 32/356 (8%)
Query: 122 GLSYPKIAKLICMSGGNLESIRH-----LAEWLKSVHVKGEFLGVALLKTGGNILERSIE 176
GL+Y L M+ GNL +R+ W+ + F V+ G E
Sbjct: 14 GLNY-----LTIMAPGNLWHMRNNFLFGSRCWMTRFSAENIFKSVSFRLFGVKCHNTDSE 68
Query: 177 ELN--EIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTMV 234
L ++++ L T GV D R P + + I + F L G +K +++
Sbjct: 69 PLKNEDLLKNLLTMGVDID---MARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASII 125
Query: 235 FDYPKILGFLTLEEMHQKVTYLKEFGLSTEDVGRLLAFRPH-LMGCGIGERWKPLVKYLY 293
YP+ + T E + ++ ++ S ++ +L P + +K+LY
Sbjct: 126 SRYPRAIT-RTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY 184
Query: 294 YLGVSRDGMRRMLVIKPMVFCFDLETTIVPKVRFFQDIGVR------DEGIANMLVKFPS 347
+G++R + R+L P F L+ V F Q G+ + + ++ K P
Sbjct: 185 SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 243
Query: 348 LLTYSLYKKIRPVVIFLMTKAGVSERDIGKCLALGP--ELLGCS--IGNKLEVNVK-YFL 402
+L S K+++ + FL + ++ ++ L GP E+L S + N+K
Sbjct: 244 ILIQS-TKRVKANIEFLRSTFNLNSEEL-LVLICGPGAEILDLSNDYARRSYANIKEKLF 301
Query: 403 SLGIKLHQLGAMIADFPMLLRYNIDIFRPKYRYLRRTMVRPLQDLIEFPRFFSYSL 458
SLG ++ + +P ++ F K L + + +IE PR S+
Sbjct: 302 SLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENI-SISQIIENPRVLDSSI 356
>sp|P09278|DEN_VZVD Deneddylase ORF22 OS=Varicella-zoster virus (strain Dumas) GN=ORF22
PE=3 SV=1
Length = 2763
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 33 EELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTN--VADRLPDFIDHVMIKAAALKKL 90
EELI + +IR +VT + A+ G+ YST +A++ P A +++L
Sbjct: 712 EELIRRVYEIRSEVTM-LLTSAVTEYFTRGVLYSTRALIAEQSPRRFRVATASTAPIQRL 770
Query: 91 ----PEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLA 146
PEF + + I ++ P +++ L + K + G +L + L
Sbjct: 771 LDSLPEF-----DAKLTAIISSLSIHPPPETIQN--LPVVSLLKELIKEGEDLNTDTALV 823
Query: 147 EWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLL 206
WL V GE +T G + R +EL+ ++ + T +R +S C L
Sbjct: 824 SWLSVV---GE------AQTAGYLSRREFDELSRTIKTINTRATQRASAEAELS-CFNTL 873
Query: 207 SQSIEEV 213
S ++++
Sbjct: 874 SAAVDQA 880
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 75 DFIDHVMIKAAALKKLPEFADSSFNVRAKWFI-EDSNVVPLIRWLKHNGLSYPKIAKLIC 133
D D+VM A+ K+P D++ +WF+ E + L+ W+ + K IC
Sbjct: 544 DINDYVMAHASEFVKVPSPFDTT---EYEWFLGEVKTSLLLLDWI------HEKSENEIC 594
Query: 134 M----SGGNLESIRHLAEWLKSVHVKGEFLGVALLKTG--GNILERSIE--ELNEIVEYL 185
+ G++ SI +AEW+ +HV + G+ LK LE+ I E+++ L
Sbjct: 595 LKFGTGEGDIHSIADIAEWI--MHVTSQLAGLLDLKGAREAAELEKRIHYGAAPELIDLL 652
Query: 186 ETNGVRR 192
G+ R
Sbjct: 653 NIRGIGR 659
>sp|Q4JQX9|DEN_VZVO Deneddylase ORF22 OS=Varicella-zoster virus (strain Oka vaccine)
GN=ORF22 PE=3 SV=2
Length = 2763
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 33 EELIMKALDIRRQVTAEIFKEAMWRKGKFGITYSTN--VADRLPDFIDHVMIKAAALKKL 90
EELI + +IR +VT + A+ G+ YST +A++ P A +++L
Sbjct: 712 EELIRRVYEIRSEVTM-LLTSAVTEYFTRGVLYSTRALIAEQSPRRFRVATASTAPIQRL 770
Query: 91 ----PEFADSSFNVRAKWFIEDSNVVPLIRWLKHNGLSYPKIAKLICMSGGNLESIRHLA 146
PEF + + I ++ P +++ L + K + G +L + L
Sbjct: 771 LDSLPEF-----DAKLTAIISSLSIHPPPETIQN--LPVVSLLKELIKEGEDLNTDTALV 823
Query: 147 EWLKSVHVKGEFLGVALLKTGGNILERSIEELNEIVEYLETNGVRRDWMGYVMSRCPQLL 206
WL V GE +T G + R +EL+ ++ + T +R +S C L
Sbjct: 824 SWLSVV---GE------AQTAGYLSRREFDELSRTIKTINTRATQRASAEAELS-CFNTL 873
Query: 207 SQSIEEV 213
S ++++
Sbjct: 874 SAAVDQA 880
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 174 SIEELNEIVEYLETNGVRRDWMGYVMSRCPQLLSQSIEEVKTRVHFYLDMGMNKNDFGTM 233
S+++L +I+ G+ + + V+ + PQLL I +++ R + +G+ + +
Sbjct: 120 SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRV 179
Query: 234 VFDYPKILGFLTLEEMHQKVTYLKEFGLST-EDVGRLLAFRPHLMGCGIGERWKPLVKYL 292
++ P+I + ++++ V LKE L T + V ++L P ++ +G+ ++Y
Sbjct: 180 LYCCPEIFT-MRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQ-----LEYK 233
Query: 293 YYLGVSRDGMRRMLVIK 309
+ R G++ ++K
Sbjct: 234 FQYAYFRMGIKHPDIVK 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,974,212
Number of Sequences: 539616
Number of extensions: 9006016
Number of successful extensions: 21285
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 21247
Number of HSP's gapped (non-prelim): 38
length of query: 556
length of database: 191,569,459
effective HSP length: 123
effective length of query: 433
effective length of database: 125,196,691
effective search space: 54210167203
effective search space used: 54210167203
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)